Query 045385
Match_columns 188
No_of_seqs 109 out of 205
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 22:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o65_A Putative ataxin-3-like 100.0 8.5E-74 2.9E-78 473.5 13.8 170 9-178 4-173 (191)
2 3zua_A CLD, alpha-hemolysin tr 85.3 2.5 8.5E-05 31.3 6.6 119 15-173 9-133 (142)
3 1xd3_A Ubiquitin carboxyl-term 81.2 3.4 0.00012 34.3 6.5 107 6-151 80-195 (230)
4 2wdt_A Ubiquitin carboxyl-term 80.2 4.8 0.00016 33.5 7.0 103 8-151 79-190 (232)
5 3k8u_A Putative ABC transporte 76.7 9.7 0.00033 28.4 7.3 125 9-171 5-139 (156)
6 3b79_A Toxin secretion ATP-bin 75.6 19 0.00064 25.5 9.1 114 18-171 5-125 (129)
7 4dm9_A Ubiquitin carboxyl-term 75.2 30 0.001 28.5 10.4 104 6-151 80-192 (228)
8 3ihr_A Ubiquitin carboxyl-term 75.1 12 0.0004 32.8 8.3 107 8-151 75-190 (328)
9 2ayn_A Ubiquitin carboxyl-term 64.0 6 0.0002 33.7 3.9 34 115-148 330-369 (404)
10 1vjv_A Ubiquitin carboxyl-term 53.1 9.2 0.00031 32.9 3.3 34 115-148 348-389 (415)
11 3nhe_A Ubiquitin carboxyl-term 50.3 10 0.00035 31.2 3.0 55 115-177 286-346 (348)
12 2lw6_A Avrpiz-T protein; plant 47.9 12 0.0004 25.6 2.4 16 123-138 13-31 (80)
13 1avo_A 11S regulator; proteaso 44.8 0.66 2.3E-05 31.0 -4.2 24 23-46 35-58 (60)
14 3i3t_A Ubiquitin carboxyl-term 43.6 21 0.00073 29.3 4.0 55 115-177 296-354 (355)
15 3mhs_A Ubiquitin carboxyl-term 37.0 19 0.00066 31.5 2.8 52 115-174 418-474 (476)
16 2y6e_A Ubiquitin carboxyl-term 27.9 41 0.0014 28.1 3.3 54 115-176 302-361 (367)
17 2pr7_A Haloacid dehalogenase/e 27.6 55 0.0019 22.2 3.4 41 135-176 5-45 (137)
18 1nb8_A Ubiquitin carboxyl-term 25.0 34 0.0011 28.8 2.2 33 115-147 243-281 (353)
19 2gfo_A Ubiquitin carboxyl-term 24.5 65 0.0022 27.6 3.9 33 115-147 339-377 (396)
20 3rii_A Ubiquitin carboxyl-term 23.1 72 0.0025 26.3 3.8 106 8-151 80-195 (233)
21 2l82_A Designed protein OR32; 22.7 68 0.0023 24.3 3.2 24 152-175 90-113 (162)
22 3rii_A Ubiquitin carboxyl-term 22.5 72 0.0025 26.3 3.6 25 25-49 116-141 (233)
23 2wm8_A MDP-1, magnesium-depend 21.8 79 0.0027 23.4 3.5 23 153-175 72-94 (187)
24 2gx5_A GTP-sensing transcripti 21.1 21 0.0007 28.4 0.0 28 22-49 17-44 (170)
25 2p1g_A Putative xylanase; stru 20.7 3.3E+02 0.011 22.6 7.4 93 83-176 144-242 (249)
No 1
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=100.00 E-value=8.5e-74 Score=473.52 Aligned_cols=170 Identities=42% Similarity=0.778 Sum_probs=164.7
Q ss_pred CceeeeccchhhHHHHHHhhhCCCCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHH
Q 045385 9 MLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQK 88 (188)
Q Consensus 9 ~iYhEkQ~~~lCalHaLNnLlQ~~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~ 88 (188)
.||||||+.+|||+|||||||||++||+.||++||++||++||..|.++|.++.+|.+++.++|+||+++||||||||++
T Consensus 4 ~IYhEkQ~~~LCalHaLNnLLQg~~Ft~~dL~~Ia~~Ld~~e~~~m~e~g~~~~d~~~~~~~ps~n~~~~GnfsInVl~~ 83 (191)
T 3o65_A 4 FIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISN 83 (191)
T ss_dssp TSCCCCCCTTCHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHGGGCTTSHHHHHHHTSCCSSBCTTCCBBHHHHHH
T ss_pred cceeeccchhhHHHHHHHHHhccccCCHHHHHHHHHHcCHHHHHHHhhcCCChHHHHHHhcCCCCCcccCCCccHHHHHH
Confidence 49999999999999999999999999999999999999999999999999888888889888999999999999999999
Q ss_pred HHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEE
Q 045385 89 ALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSI 168 (188)
Q Consensus 89 AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sI 168 (188)
||++||++++|+|++++...++||..+.|||||.+|||||||||+|+||||||++++|+.|+++||.+||+||+.+||||
T Consensus 84 AL~~~glelv~~d~~~~~~~~~~p~~~~~FI~N~~~HWfaiRkigg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~si 163 (191)
T 3o65_A 84 ALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSV 163 (191)
T ss_dssp HHHTTTCEEEETTCHHHHHTCCCGGGCCEEEEEESSCEEEEEEETTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEE
T ss_pred HHHHcCCeEEECCCchhhhhcCChhhhhhhhhccccceeeEEecCCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEE
Confidence 99999999999999987667899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCC
Q 045385 169 FIVRGNFPKE 178 (188)
Q Consensus 169 FvV~g~lp~~ 178 (188)
|||+|+||..
T Consensus 164 FvV~g~lP~~ 173 (191)
T 3o65_A 164 FVVKGDLPDC 173 (191)
T ss_dssp EEEESCCCCC
T ss_pred EEEcCCCCCC
Confidence 9999999983
No 2
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=85.29 E-value=2.5 Score=31.26 Aligned_cols=119 Identities=14% Similarity=0.110 Sum_probs=73.9
Q ss_pred ccchhhHHHHHHhhhCC--CCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHHHHhh
Q 045385 15 QESKLCAVHCVNTVLQG--PFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEV 92 (188)
Q Consensus 15 Q~~~lCalHaLNnLlQ~--~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~AL~~ 92 (188)
|...=|++.||-.+++- ..+|..+|.+. +.. ..+-.+..-|.+|.+.
T Consensus 9 ~~~~dcglacLa~i~~~~g~~~s~~~L~~~---~~~----------------------------~~~g~s~~~l~~aa~~ 57 (142)
T 3zua_A 9 CHKIDYGLYALEILAQYHNVSVNPEEIKHR---FDT----------------------------DGTGLGLTSWLLAAKS 57 (142)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCCHHHHHHH---TCT----------------------------TSSCCCHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHcCCCCCHHHHHHH---cCC----------------------------CcCCcCHHHHHHHHHH
Confidence 33466999999988864 46777666542 100 0123688889999999
Q ss_pred CCceeEEcCCCCCCCCCCCcccceeeeecc-CCceEEEEeeC---CEEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEE
Q 045385 93 WDLQVIPLNCPIAEPAQIDPELENAFICHL-HDHWFCIRKVN---GEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSI 168 (188)
Q Consensus 93 ~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~-~rHWfaIRki~---g~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sI 168 (188)
.|+++..+..+......+ ..-+|+.. ..|||.|-+++ +..+-.|.....|+.++-. .|.+.. .|+-|
T Consensus 58 ~Gl~a~~~~~~~~~L~~l----~lP~Il~~~~g~~~Vv~~~~~~~~~~~I~dP~~g~~~~~s~~---ef~~~w--~G~~l 128 (142)
T 3zua_A 58 LELKVKQVKKTIDRLNFI----SLPALVWREDGRHFILTKVSKEANRYLIFDLEQRNPRVLEQS---EFEALY--QGHII 128 (142)
T ss_dssp TTEEEEEEECCHHHHTTS----SSSEEECCTTSCCEEEEEEETTTTEEEEEETTTTEEEEEEHH---HHHHHC--CSEEE
T ss_pred CCCeeEEeecCHHHHhcC----CCCEEEEEcCCCEEEEEEEeCCCCEEEEEcCCCCCcEEecHH---HHHhhC--CCEEE
Confidence 999887765432111111 22344432 45666776674 5799999876568888843 344433 47777
Q ss_pred EEEEC
Q 045385 169 FIVRG 173 (188)
Q Consensus 169 FvV~g 173 (188)
++...
T Consensus 129 ~~~~~ 133 (142)
T 3zua_A 129 LIASR 133 (142)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 77643
No 3
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=81.21 E-value=3.4 Score=34.29 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=64.5
Q ss_pred CCCCceeeecc-chhhHHHH----HHhhhCCCCC----CHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccC
Q 045385 6 NGGMLYHEVQE-SKLCAVHC----VNTVLQGPFF----SEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVS 76 (188)
Q Consensus 6 ~~~~iYhEkQ~-~~lCalHa----LNnLlQ~~~f----t~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~ 76 (188)
....|||=||. .-=||.+| |=|.-..-.+ +-..|-+-+..+++.+|...++.. +.+. .-||..
T Consensus 80 ~~~~v~f~kQtI~NACgT~AlLh~l~N~~~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~-------~~i~-~aHns~ 151 (230)
T 1xd3_A 80 VTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENY-------DAIR-VTHETS 151 (230)
T ss_dssp CCTTCCCCCCCSBTCHHHHHHHHHHHTTGGGCCBCTTCHHHHHHHHHTTSCHHHHHHHHHTC-------HHHH-HHHHHH
T ss_pred CCcCcEEeehhccccHHHHHHHHHHHcCcCCcccCCCchHHHHHHHccCCCHHHHHHHhcCc-------HHHH-HHHHHH
Confidence 34579999999 57888654 4332111122 245566669999999998877531 0111 123221
Q ss_pred CCCCchHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcch
Q 045385 77 LDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSK 151 (188)
Q Consensus 77 ~~GNydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~ 151 (188)
-+.|-. ..+. .+. ...-|++|.-+++|.=|-||-..+.|+..|.
T Consensus 152 --------------A~~g~t----~~p~-------~~~------~~~~HFI~fV~~~G~LyELDG~k~gPi~~G~ 195 (230)
T 1xd3_A 152 --------------AHEGQT----EAPS-------IDE------KVDLHFIALVHVDGHLYELDGRKPFPINHGE 195 (230)
T ss_dssp --------------HTCSSS----CCCC-------TTS------CCCEEEEEEEEETTEEEEECTTSSSCEEEEE
T ss_pred --------------hccCCC----CCCC-------CCC------CcCeEEEEEEeeCCEEEEccCCCCCCeecCC
Confidence 111210 0010 011 2345999988999999999999999999974
No 4
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=80.17 E-value=4.8 Score=33.51 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=65.2
Q ss_pred CCceeeecc-chhhH----HHHHHhhhCCCCC----CHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCC
Q 045385 8 GMLYHEVQE-SKLCA----VHCVNTVLQGPFF----SEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLD 78 (188)
Q Consensus 8 ~~iYhEkQ~-~~lCa----lHaLNnLlQ~~~f----t~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~ 78 (188)
..|||=||. .-=|| +|+|-|.-.+-.+ +-..|-+-+..+++.+|...++.. +.+ +.-||.. .
T Consensus 79 ~~v~f~kQtI~NACgT~AlLh~l~N~~~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~-------~~i-~~aHns~-~ 149 (232)
T 2wdt_A 79 DNVWFIKQYIPNSCGTIALLHLYGNLRNKFELDKDSVLDDFFNKVNEMSAEKRGQELKNN-------KSI-ENLHHEF-C 149 (232)
T ss_dssp TTSCCCCCCSTTCHHHHHHHHHHHHSTTTSCCCTTSHHHHHHHHTTTSCHHHHHHHHHHC-------HHH-HHHHTTS-S
T ss_pred CCcEEeeeccccchHHHHHHHHHhcCccccccCCChHHHHHHHHccCCCHHHHHHHhhcc-------HHH-HHHHHhc-c
Confidence 469999999 57787 5666664221222 356667778899999998876521 011 1123332 1
Q ss_pred CCchHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcch
Q 045385 79 GDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSK 151 (188)
Q Consensus 79 GNydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~ 151 (188)
|- .+ .|+... ...-|.+|.-+++|.=|-||-..+.|+..|.
T Consensus 150 g~----------------------t~------~p~~~~----~v~~HFI~fV~~~G~LyELDG~k~gPi~~G~ 190 (232)
T 2wdt_A 150 GQ----------------------VE------NRDDIL----DVDTHFIVFVQIEGKIIELDGRKDHPTVHCF 190 (232)
T ss_dssp CC----------------------CC------SHHHHH----CCCEEEEEEEESSSEEEEECTTSSSCEEEEE
T ss_pred Cc----------------------cC------CCCCCC----CCCeEEEEEEEeCCEEEEccCCCCCCcccCC
Confidence 10 00 011100 2346999999999999999999999999984
No 5
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=76.73 E-value=9.7 Score=28.39 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=76.9
Q ss_pred Cceeeeccc-hhhHHHHHHhhhCC--CCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHH
Q 045385 9 MLYHEVQES-KLCAVHCVNTVLQG--PFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQV 85 (188)
Q Consensus 9 ~iYhEkQ~~-~lCalHaLNnLlQ~--~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinV 85 (188)
.+-+-+|.. .=|++.||-.+++- ..+|..+|.+. + + . ..+-.+..-
T Consensus 5 ~~p~~~Q~~~~dcglacLa~i~~~~g~~~s~~~L~~~---~----------~--------------~----~~~g~s~~~ 53 (156)
T 3k8u_A 5 HYKLVPQIDTRDCGPAVLASVAKHYGSNYSIAYLREL---S----------K--------------T----NKQGTTALG 53 (156)
T ss_dssp CCCCCCCSSTTCHHHHHHHHHHHHTTCCCCHHHHHHH---T----------T--------------C----BTTBCCHHH
T ss_pred CCceEECCCCCCHHHHHHHHHHHHhCCCCCHHHHHHH---c----------C--------------C----CCCCcCHHH
Confidence 355667774 78999999998874 46666666431 1 0 0 012367888
Q ss_pred HHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeecc--C---CceEEEEeeC-CEEEEeeCCCC-CceEcchhhHHHHH
Q 045385 86 LQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHL--H---DHWFCIRKVN-GEWYNFDSLYA-APEHLSKFYLSAYL 158 (188)
Q Consensus 86 L~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~--~---rHWfaIRki~-g~wyNLDS~l~-~P~~i~~~~L~~~L 158 (188)
|.+|++..|+++..+..+. ....+. ....-+|+.. . .||+.|.+++ +..+-.|.... +|+.++-. +|.
T Consensus 54 l~~~a~~~Gl~a~~~~~~~-~~~~l~-~~~lP~I~~~~~~g~~~hfvVl~~~~~~~v~I~DP~~g~~~~~ls~~---ef~ 128 (156)
T 3k8u_A 54 IVEAAKKLGFETRSIKADM-TLFDYN-DLTYPFIVHVIKGKRLQHYYVVYGSQNNQLIIGDPDPSVKVTRMSKE---RFQ 128 (156)
T ss_dssp HHHHHHHTTEEEEEEECCG-GGGGCT-TCCSCEEEEEEETTEEEEEEEEEEEETTEEEEEECSTTTEEEEEEHH---HHH
T ss_pred HHHHHHHCCCeeEEEEeeh-hhhhHh-cCCCCEEEEEEecCCCcEEEEEEEEcCCEEEEEcCCCCcceEEEcHH---HHH
Confidence 9999999999887665432 100111 1123444432 2 5999999985 56788887655 58888843 243
Q ss_pred HHHHhCCeEEEEE
Q 045385 159 DSLKGFGWSIFIV 171 (188)
Q Consensus 159 ~~l~~~g~sIFvV 171 (188)
+.. .|+-|++-
T Consensus 129 ~~w--~G~~l~~~ 139 (156)
T 3k8u_A 129 SEW--TGLAIFLA 139 (156)
T ss_dssp HHE--EEEEEEEE
T ss_pred hhC--ceEEEEEE
Confidence 333 46666555
No 6
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=75.63 E-value=19 Score=25.50 Aligned_cols=114 Identities=17% Similarity=0.003 Sum_probs=68.7
Q ss_pred hhhHHHHHHhhhCC--CCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHHHHhhCCc
Q 045385 18 KLCAVHCVNTVLQG--PFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDL 95 (188)
Q Consensus 18 ~lCalHaLNnLlQ~--~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~AL~~~~~ 95 (188)
.-|++-||-.+++- ..+|..+|.+. +. . ..+-.+..-|.+|++..|+
T Consensus 5 ~dcgla~L~~i~~~~g~~~~~~~l~~~---~~-------------------------~---~~~g~s~~~l~~~a~~~Gl 53 (129)
T 3b79_A 5 KDPLLNSLIYVSRYYGLANSPEALVNG---LP-------------------------L---SDGKLTPFLLPRAAERAGL 53 (129)
T ss_dssp CCHHHHHHHHHHHHTTCCCCHHHHHTT---CC-------------------------C---BTTBCCTTTHHHHHHHHTE
T ss_pred CCcHHHHHHHHHHHhCCCCCHHHHHhc---CC-------------------------C---cCCCCCHHHHHHHHHHCCC
Confidence 45888888888764 46666665331 10 0 0223556678999999999
Q ss_pred eeEEcCCCCCCCCCCCcccceeeee-ccCCceEEEEeeCC---EEEEeeCC-CCCceEcchhhHHHHHHHHHhCCeEEEE
Q 045385 96 QVIPLNCPIAEPAQIDPELENAFIC-HLHDHWFCIRKVNG---EWYNFDSL-YAAPEHLSKFYLSAYLDSLKGFGWSIFI 170 (188)
Q Consensus 96 ~~~~~d~~~~~~~~~~~~~~~gFI~-N~~rHWfaIRki~g---~wyNLDS~-l~~P~~i~~~~L~~~L~~l~~~g~sIFv 170 (188)
++..+..+. ..+.. ...-+|+ -...||+.|.++++ ..+-.|.. -.+++.++-. +|.+.. .|+-+++
T Consensus 54 ~~~~~~~~~---~~L~~-l~lP~I~~~~~~h~vVl~~~~~~~~~~~i~dp~~~~g~~~~~~~---ef~~~w--~G~~l~~ 124 (129)
T 3b79_A 54 VAKENRAEL---EKISS-LILPAILVLKGGDSCVLNSINMETREAEVTTLESGMVPISIPLE---DLLEQY--TGRYFLV 124 (129)
T ss_dssp EEEEEECCG---GGSCG-GGCSEEEEEGGGEEEEEEEEETTTTEEEEECTTTTTSCEEEEHH---HHHHHE--EEEEEEE
T ss_pred eEEEEECCH---HHCCc-CCCCEEEEEcCCCEEEEEEEcCCCceEEEEccCCCCCcEEeeHH---HHHhhC--CEEEEEE
Confidence 887766432 12221 1223443 23459999999965 57788875 3567888743 343333 4665655
Q ss_pred E
Q 045385 171 V 171 (188)
Q Consensus 171 V 171 (188)
.
T Consensus 125 ~ 125 (129)
T 3b79_A 125 K 125 (129)
T ss_dssp E
T ss_pred e
Confidence 4
No 7
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=75.19 E-value=30 Score=28.54 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=63.3
Q ss_pred CCCCceeeecc-chhhHHHHHH-hhh--CCCCC-----CHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccC
Q 045385 6 NGGMLYHEVQE-SKLCAVHCVN-TVL--QGPFF-----SEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVS 76 (188)
Q Consensus 6 ~~~~iYhEkQ~-~~lCalHaLN-nLl--Q~~~f-----t~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~ 76 (188)
....|||=||. .-=||.+||= .|+ +...- +-..|-+-+..+++.+|...++... .+. .-||.
T Consensus 80 ~~~~v~f~kQtI~NACgt~ALLh~l~N~~~~i~i~~gs~L~~f~~~t~~~~p~~Rg~~L~n~~-------~i~-~aHns- 150 (228)
T 4dm9_A 80 VSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNE-------AIQ-AAHDA- 150 (228)
T ss_dssp SCTTSCCCCCCSTTCHHHHHHHHHHHTTTTTCCBCTTCHHHHHHHHTTTSCHHHHHHHHHTCH-------HHH-HHHHH-
T ss_pred CCcccEEeeeeccccHHHHHHHHHHhcCccccccCCCcHHHHHHHHhccCCHHHHHHHHhcCH-------HHH-HHHHH-
Confidence 34579999999 6888866632 222 12121 2345566678899999988775310 110 11221
Q ss_pred CCCCchHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcch
Q 045385 77 LDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSK 151 (188)
Q Consensus 77 ~~GNydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~ 151 (188)
.-+.|-. + .+.. ..-|.+|.-+++|.=|-||-..+.|+..|.
T Consensus 151 -------------~A~~g~t-------~-------~~~~------~~~HFIafV~~dG~LyELDG~k~gPi~~G~ 192 (228)
T 4dm9_A 151 -------------VAQEGQC-------R-------VDDK------VNFHFILFNNVDGHLYELDGRMPFPVNHGA 192 (228)
T ss_dssp -------------HHTTSSC-------C-------CCTT------CCEEEEEEEEETTEEEEECTTSSSCEEEEE
T ss_pred -------------HhccCCC-------C-------CCCC------CCceEEEEEEeCCeEEEcCCCCCCCceecc
Confidence 1111110 0 1111 234999999999999999999999999974
No 8
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=75.09 E-value=12 Score=32.77 Aligned_cols=107 Identities=19% Similarity=0.324 Sum_probs=61.2
Q ss_pred CCceeeecc-chhhHH----HHHHhhhCCCCC---CHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCC-C
Q 045385 8 GMLYHEVQE-SKLCAV----HCVNTVLQGPFF---SEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSL-D 78 (188)
Q Consensus 8 ~~iYhEkQ~-~~lCal----HaLNnLlQ~~~f---t~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~-~ 78 (188)
..|||=||. .-=||. |+|.|.-....= +-..|-+.+..++|.+|...++.. +.+. .-||... .
T Consensus 75 ~~v~f~kQtI~NACGT~ALLh~l~N~~~~~I~~Gs~L~~f~~~t~~l~P~~Rg~~L~ns-------~~i~-~aHns~A~~ 146 (328)
T 3ihr_A 75 DTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNS-------DVIR-QVHNSFARQ 146 (328)
T ss_dssp TTSCCCCCCSGGGHHHHHHHHHHHTCCCTTCBCHHHHHHHHHHHTTSCHHHHHHHHHTC-------HHHH-HHHHTTC--
T ss_pred cccchHHHhccchHHHHHHHHHHHcCCcccCCCCcHHHHHHHHhcCCCHHHHHHHHhcC-------HHHH-HHHHHHhcc
Confidence 469999999 688984 555553211111 133445567889999998887631 1111 1244321 2
Q ss_pred CCchHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcch
Q 045385 79 GDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSK 151 (188)
Q Consensus 79 GNydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~ 151 (188)
|-|.. +.+. . .+...+ -|++|.-+++|.=|-||-..+.|+..|.
T Consensus 147 g~~~~-----------------dt~~--~----~~d~~~------~HFIafV~~dG~LyELDG~k~gPI~hG~ 190 (328)
T 3ihr_A 147 QMFEF-----------------DTKT--S----AKEEDA------FHFVSYVPVNGRLYELDGLREGPIDLGA 190 (328)
T ss_dssp --------------------------------------C------EEEEEEEEETTEEEEEETTSSSCEEEEE
T ss_pred CCccC-----------------CCCC--C----CCcCcc------eeEEEEEeeCCEEEEcCCCCCCCcccCC
Confidence 32211 0000 0 011122 3999999999999999999999999974
No 9
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=63.97 E-value=6 Score=33.69 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=28.5
Q ss_pred ceeeeeccCC-----ceEEEEee-CCEEEEeeCCCCCceE
Q 045385 115 ENAFICHLHD-----HWFCIRKV-NGEWYNFDSLYAAPEH 148 (188)
Q Consensus 115 ~~gFI~N~~r-----HWfaIRki-~g~wyNLDS~l~~P~~ 148 (188)
..|+|++.++ |++|..|- +|.||.+|=..-.|+.
T Consensus 330 L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~ 369 (404)
T 2ayn_A 330 LQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVT 369 (404)
T ss_dssp EEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBC
T ss_pred EEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecC
Confidence 4599998876 99999998 9999999987766654
No 10
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=53.07 E-value=9.2 Score=32.89 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=27.7
Q ss_pred ceeeeeccCC-----ceEEEEee---CCEEEEeeCCCCCceE
Q 045385 115 ENAFICHLHD-----HWFCIRKV---NGEWYNFDSLYAAPEH 148 (188)
Q Consensus 115 ~~gFI~N~~r-----HWfaIRki---~g~wyNLDS~l~~P~~ 148 (188)
..|+|++.++ |++|..|- +|.||.+|=..-.|+.
T Consensus 348 L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~ 389 (415)
T 1vjv_A 348 LIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE 389 (415)
T ss_dssp EEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEEC
T ss_pred EEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcC
Confidence 5699999876 99999988 8999999976555543
No 11
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=50.33 E-value=10 Score=31.16 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=37.1
Q ss_pred ceeeeeccC----CceEEEEee--CCEEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEEEEEECCCCC
Q 045385 115 ENAFICHLH----DHWFCIRKV--NGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPK 177 (188)
Q Consensus 115 ~~gFI~N~~----rHWfaIRki--~g~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sIFvV~g~lp~ 177 (188)
..|+|++.+ -|++|..|- +|.||-+|=..-.|+...+- +..+.|-+|-.+.+.|.
T Consensus 286 L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v--------~~~~aY~LfY~r~~~~~ 346 (348)
T 3nhe_A 286 LYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQV--------RTSDAYLLFYELASPPS 346 (348)
T ss_dssp EEEEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGT--------CCTTEEEEEEEECC---
T ss_pred EEEEEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECCHHHc--------CCCCceEEEEEecCCCC
Confidence 458888764 499998876 78999999877666543321 23567888887776654
No 12
>2lw6_A Avrpiz-T protein; plant resistance gene, avirulence protein, protein degradation, apoptosis; NMR {Magnaporthe oryzae}
Probab=47.94 E-value=12 Score=25.62 Aligned_cols=16 Identities=44% Similarity=0.875 Sum_probs=13.5
Q ss_pred CCceEEEEeeCC---EEEE
Q 045385 123 HDHWFCIRKVNG---EWYN 138 (188)
Q Consensus 123 ~rHWfaIRki~g---~wyN 138 (188)
.|||=+|||-.| .+|.
T Consensus 13 grhwgtirkkagwavrfye 31 (80)
T 2lw6_A 13 GRHWGTIRKKAGWAVRFYE 31 (80)
T ss_dssp TEEEEEEEEETTSCEEEEE
T ss_pred CccceeeeeccceEEEeee
Confidence 899999999987 5664
No 13
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=44.82 E-value=0.66 Score=31.05 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=18.6
Q ss_pred HHHHhhhCCCCCCHHHHHHHHhhh
Q 045385 23 HCVNTVLQGPFFSEFDLAALASDL 46 (188)
Q Consensus 23 HaLNnLlQ~~~ft~~dL~~Ia~~L 46 (188)
-=||+||++|.|+-.+|++|...|
T Consensus 35 ~eln~LL~~~~f~~~dls~l~~~l 58 (60)
T 1avo_A 35 SELDAFLKEPALNEANLSNLKAPL 58 (60)
T ss_dssp HHHHHHHHSGGGCCSCTTSSCCCC
T ss_pred HHHHHHHcccccccccHHHhcccc
Confidence 348999999999988887765544
No 14
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=43.59 E-value=21 Score=29.25 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=38.0
Q ss_pred ceeeeecc----CCceEEEEeeCCEEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEEEEEECCCCC
Q 045385 115 ENAFICHL----HDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPK 177 (188)
Q Consensus 115 ~~gFI~N~----~rHWfaIRki~g~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sIFvV~g~lp~ 177 (188)
..|+|++. .-|++|..|-++.||-+|=..-.|+... .+ +..+.|-+|-.+-+-|.
T Consensus 296 L~avv~H~G~~~~GHY~~~~~~~~~W~~~nD~~V~~v~~~--~v------~~~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 296 LYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSEN--QV------ASSEGYVLFYQLMQEPP 354 (355)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTEEEEEETTEEEEECHH--HH------HTSCCSEEEEEEC----
T ss_pred EEEEEEecCCCCCCeEEEEEEcCCeEEEEcCCCcEECCHH--Hc------CCCCcEEEEEEeccCCC
Confidence 35788876 4799999999999999998766555322 11 24678988888776664
No 15
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=36.96 E-value=19 Score=31.47 Aligned_cols=52 Identities=17% Similarity=0.421 Sum_probs=35.4
Q ss_pred ceeeeecc----CCceEEEEee-CCEEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEEEEEECC
Q 045385 115 ENAFICHL----HDHWFCIRKV-NGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGN 174 (188)
Q Consensus 115 ~~gFI~N~----~rHWfaIRki-~g~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sIFvV~g~ 174 (188)
..|+|++. .-|+++..|. +|.||-+|=..-.|+... .+ +..+.|-+|-++.+
T Consensus 418 L~avv~H~G~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~--~v------~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 418 LIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQE--EV------LKEQAYLLFYTIRQ 474 (476)
T ss_dssp EEEEEEEEECSSSEEEEEEEECTTSCEEEEETTEEEEECHH--HH------TTSCEEEEEEEEEE
T ss_pred EEEEEEeCCCCCCCceEEEEECCCCcEEEEeCCceEECCHH--Hh------ccCCcEEEEEEEec
Confidence 35888876 4599999887 789999998765554322 11 12567777776654
No 16
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=27.86 E-value=41 Score=28.11 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=36.0
Q ss_pred ceeeeecc----CCceEEEEee--CCEEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEEEEEECCCC
Q 045385 115 ENAFICHL----HDHWFCIRKV--NGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176 (188)
Q Consensus 115 ~~gFI~N~----~rHWfaIRki--~g~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sIFvV~g~lp 176 (188)
..|+|++. +-|++|..|- +|.||.+|=..-.|+...+ + +..+.|-+|-.+.+..
T Consensus 302 L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~--v------~~~~aYiLfY~r~~~~ 361 (367)
T 2y6e_A 302 LIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQ--I------VTKAAYVLFYQRRDDE 361 (367)
T ss_dssp EEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECCGGG--T------SSTTEEEEEEEECCC-
T ss_pred EEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECCHHH--c------CCCCcEEEEEEEcCCC
Confidence 34888876 5799999887 5899999976655443222 1 1256788887765543
No 17
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=27.60 E-value=55 Score=22.19 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=28.0
Q ss_pred EEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEEEEEECCCC
Q 045385 135 EWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176 (188)
Q Consensus 135 ~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sIFvV~g~lp 176 (188)
.-+.+|-++.....+ ...+..+|+.|++.|+.+.+|.+.-.
T Consensus 5 i~~D~DgtL~~~~~~-~~~~~~~l~~L~~~G~~~~i~S~~~~ 45 (137)
T 2pr7_A 5 LIVDYAGVLDGTDED-QRRWRNLLAAAKKNGVGTVILSNDPG 45 (137)
T ss_dssp EEECSTTTTSSCHHH-HHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred EEEeccceecCCCcc-CccHHHHHHHHHHCCCEEEEEeCCCH
Confidence 456677777332211 13467889999999999999987643
No 18
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=25.01 E-value=34 Score=28.80 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=25.0
Q ss_pred ceeeeecc----CCceEEEEe--eCCEEEEeeCCCCCce
Q 045385 115 ENAFICHL----HDHWFCIRK--VNGEWYNFDSLYAAPE 147 (188)
Q Consensus 115 ~~gFI~N~----~rHWfaIRk--i~g~wyNLDS~l~~P~ 147 (188)
..|+|++. +-|++|..+ -+|.||.+|=..-.|+
T Consensus 243 L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v 281 (353)
T 1nb8_A 243 LHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRC 281 (353)
T ss_dssp EEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEEC
T ss_pred EEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEEC
Confidence 34888876 489999887 4789999997654443
No 19
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=24.47 E-value=65 Score=27.57 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=25.0
Q ss_pred ceeeeecc----CCceEEEEee--CCEEEEeeCCCCCce
Q 045385 115 ENAFICHL----HDHWFCIRKV--NGEWYNFDSLYAAPE 147 (188)
Q Consensus 115 ~~gFI~N~----~rHWfaIRki--~g~wyNLDS~l~~P~ 147 (188)
..|+|++. +-|++|..|- ++.||.+|=..-.++
T Consensus 339 L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v 377 (396)
T 2gfo_A 339 LFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDI 377 (396)
T ss_dssp EEEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEEC
T ss_pred EEEEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEEC
Confidence 45888876 5899998876 489999997654443
No 20
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=23.06 E-value=72 Score=26.25 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=63.1
Q ss_pred CCceeeecc-chhhHH----HHHHhhhCCCCC----CHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccC-C
Q 045385 8 GMLYHEVQE-SKLCAV----HCVNTVLQGPFF----SEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVS-L 77 (188)
Q Consensus 8 ~~iYhEkQ~-~~lCal----HaLNnLlQ~~~f----t~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~-~ 77 (188)
..|||=||. .-=||. |+|.|.- .... +-..|-+.+..+++.+|...++.. +.+. .-||.. -
T Consensus 80 ~~v~f~kQtI~NACgT~ALLh~l~N~~-~~~i~~gs~L~~f~~~t~~~~p~~Rg~~L~n~-------~~i~-~aH~s~A~ 150 (233)
T 3rii_A 80 DTIFFAKQVINNASATQAIVSVLLNCT-HQDVHLGETLSEFKEFSQSFDAAMKGLALSNS-------DVIR-QVHNSFAR 150 (233)
T ss_dssp GTSCCCCCCCGGGHHHHHHHHHHHTCC-CTTCBCCHHHHHHHHHHTTCCHHHHHHHHHTC-------HHHH-HHHHHTSC
T ss_pred ccceEeehhccccHHHHHHHHHHHcCC-cccccCCcHHHHHHHHhcCCCHHHHHHHHhcC-------HHHH-HHHHHHhh
Confidence 369999999 688884 5555532 1111 244566678889999998887631 1111 123322 2
Q ss_pred CCCchHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcch
Q 045385 78 DGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSK 151 (188)
Q Consensus 78 ~GNydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~ 151 (188)
.|-+.. +... ..+.. ..-|.+|.-+++|.=|-||-..+.|+..|.
T Consensus 151 ~g~~~~-----------------dt~~------~~~~~------~~~HFIafV~~dG~LyELDG~k~gPi~~G~ 195 (233)
T 3rii_A 151 QQMFEF-----------------DTKT------SAKEE------DAFHFVSYVPVNGRLYELDGLREGPIDLGA 195 (233)
T ss_dssp C---------------------------------CCGG------GGSEEEEEEEETTEEEEECTTSSSCEEEEE
T ss_pred cCCccC-----------------CCCC------CCccC------cceeEEEEEEeCCeEEEcCCCCCCCcccCC
Confidence 343211 0000 00111 124999999999999999999999999874
No 21
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.70 E-value=68 Score=24.29 Aligned_cols=24 Identities=21% Similarity=0.438 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhCCeEEEEEECCC
Q 045385 152 FYLSAYLDSLKGFGWSIFIVRGNF 175 (188)
Q Consensus 152 ~~L~~~L~~l~~~g~sIFvV~g~l 175 (188)
..+..|+...+..|.+||||..+-
T Consensus 90 ewikdfieeakergvevfvvynnk 113 (162)
T 2l82_A 90 EWIKDFIEEAKERGVEVFVVYNNK 113 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHhcCcEEEEEecCC
Confidence 467889999999999999997654
No 22
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=22.46 E-value=72 Score=26.28 Aligned_cols=25 Identities=12% Similarity=-0.073 Sum_probs=14.0
Q ss_pred HHhhhCC-CCCCHHHHHHHHhhhCHH
Q 045385 25 VNTVLQG-PFFSEFDLAALASDLDRS 49 (188)
Q Consensus 25 LNnLlQ~-~~ft~~dL~~Ia~~Ld~~ 49 (188)
|.+++.. .-+++.+-..+-..-+..
T Consensus 116 L~~f~~~t~~~~p~~Rg~~L~n~~~i 141 (233)
T 3rii_A 116 LSEFKEFSQSFDAAMKGLALSNSDVI 141 (233)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCHHH
Confidence 4555553 467777666555444443
No 23
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=21.81 E-value=79 Score=23.38 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhCCeEEEEEECCC
Q 045385 153 YLSAYLDSLKGFGWSIFIVRGNF 175 (188)
Q Consensus 153 ~L~~~L~~l~~~g~sIFvV~g~l 175 (188)
....+|+.|+++|+.|.+|.+.-
T Consensus 72 g~~e~L~~L~~~G~~v~ivT~~~ 94 (187)
T 2wm8_A 72 EVPEVLKRLQSLGVPGAAASRTS 94 (187)
T ss_dssp THHHHHHHHHHHTCCEEEEECCS
T ss_pred hHHHHHHHHHHCCceEEEEeCCC
Confidence 46789999999999999998764
No 24
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=21.11 E-value=21 Score=28.35 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=23.9
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHhhhCHH
Q 045385 22 VHCVNTVLQGPFFSEFDLAALASDLDRS 49 (188)
Q Consensus 22 lHaLNnLlQ~~~ft~~dL~~Ia~~Ld~~ 49 (188)
---||.|||...=.+.++++||..|...
T Consensus 17 tRkIN~lLq~~~~~~v~f~eia~vLs~v 44 (170)
T 2gx5_A 17 TRIINSMLQAAAGKPVNFKEMAETLRDV 44 (170)
T ss_dssp HHHHHHHHHSCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 4569999999776899999999998665
No 25
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=20.73 E-value=3.3e+02 Score=22.61 Aligned_cols=93 Identities=16% Similarity=-0.013 Sum_probs=57.5
Q ss_pred HHHHHHHHhhCCceeEEcCCCCCCC-CCCCcccceeeeecc-----CCceEEEEeeCCEEEEeeCCCCCceEcchhhHHH
Q 045385 83 IQVLQKALEVWDLQVIPLNCPIAEP-AQIDPELENAFICHL-----HDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSA 156 (188)
Q Consensus 83 inVL~~AL~~~~~~~~~~d~~~~~~-~~~~~~~~~gFI~N~-----~rHWfaIRki~g~wyNLDS~l~~P~~i~~~~L~~ 156 (188)
+.+++++|..+.+..++.+.-.... ..+.+-...||..+. ..==|+||.=++.+|--=|...+=+.+++..|..
T Consensus 144 i~~~E~~l~~~~i~YIP~~~i~~~~l~~l~~GDiI~i~t~~~GLDVsHvGi~i~~~~~l~f~hASs~~~kVv~s~~~l~~ 223 (249)
T 2p1g_A 144 MAKYEKALSGKEVHYLPKDKLEPDGLPWIKNGDIIALTTNTPGLDVSHMGIAIYIKGQLHLLHASSKEGKVVVGKTALSQ 223 (249)
T ss_dssp HHHHHHHHTTCEEECEEGGGCCTTCCTTSCTTCEEEEEECSTTCSEEEEEEEEEETTEEEEEEEETTTTEEEECSSCHHH
T ss_pred HHHHHhhhcCCeeEECcHHHHhHHHHhcCCCCCEEEEEeCCCCCceeEEEEEEEECCeEEEEEcCCCCCeEEECCcCHHH
Confidence 3466677777777777765532222 456666778888764 3345888886677888888877755556667888
Q ss_pred HHHHHHhCCeEEEEEECCCC
Q 045385 157 YLDSLKGFGWSIFIVRGNFP 176 (188)
Q Consensus 157 ~L~~l~~~g~sIFvV~g~lp 176 (188)
|++.-. .---|.|+|-.-|
T Consensus 224 Y~~~~~-~~~GI~V~R~~~~ 242 (249)
T 2p1g_A 224 MLKDRK-SLTGIRVLRMKKE 242 (249)
T ss_dssp HHHTCT-TEEEEEEEEC---
T ss_pred HHhcCC-CCccEEEEeeCCC
Confidence 888531 1123555554444
Done!