Query 045386
Match_columns 706
No_of_seqs 436 out of 4552
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 12:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-77 3.3E-82 690.1 29.9 615 74-705 36-781 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.4E-48 1.8E-52 467.0 31.7 445 187-679 186-714 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.7E-39 1.2E-43 334.8 7.7 238 190-435 1-285 (287)
4 KOG0617 Ras suppressor protein 99.6 4.6E-17 9.9E-22 146.2 -4.5 167 524-704 29-200 (264)
5 KOG0444 Cytoskeletal regulator 99.6 2E-16 4.4E-21 167.1 -1.7 177 522-705 97-279 (1255)
6 PLN00113 leucine-rich repeat r 99.5 1.1E-13 2.4E-18 168.6 12.3 152 524-679 160-318 (968)
7 KOG0617 Ras suppressor protein 99.5 1E-15 2.2E-20 137.7 -4.4 153 546-705 28-184 (264)
8 PLN00113 leucine-rich repeat r 99.5 1.4E-13 3E-18 167.7 10.6 152 525-680 137-295 (968)
9 KOG0444 Cytoskeletal regulator 99.4 6.3E-14 1.4E-18 148.5 -1.9 153 522-680 216-373 (1255)
10 KOG4194 Membrane glycoprotein 99.3 1.4E-12 3.1E-17 137.8 3.0 107 522-629 143-256 (873)
11 PLN03210 Resistant to P. syrin 99.3 2.8E-11 6E-16 148.5 13.9 173 526-705 609-836 (1153)
12 KOG0472 Leucine-rich repeat pr 99.2 6.8E-13 1.5E-17 134.4 -5.7 173 522-704 131-307 (565)
13 KOG4194 Membrane glycoprotein 99.2 5.6E-12 1.2E-16 133.3 0.3 154 522-679 191-351 (873)
14 KOG0472 Leucine-rich repeat pr 99.1 2.1E-12 4.6E-17 130.9 -4.8 174 522-705 108-286 (565)
15 PRK15370 E3 ubiquitin-protein 99.0 8.1E-10 1.8E-14 127.3 9.2 70 529-604 221-290 (754)
16 KOG0532 Leucine-rich repeat (L 98.9 6.4E-11 1.4E-15 125.4 -2.1 149 525-681 95-246 (722)
17 KOG0618 Serine/threonine phosp 98.9 1.2E-10 2.6E-15 129.9 -1.0 69 523-591 259-327 (1081)
18 PRK15370 E3 ubiquitin-protein 98.9 2E-09 4.3E-14 124.1 7.9 158 528-705 199-378 (754)
19 PRK04841 transcriptional regul 98.9 2.1E-08 4.6E-13 121.6 16.9 253 195-481 20-332 (903)
20 KOG4658 Apoptotic ATPase [Sign 98.8 3.1E-09 6.8E-14 124.4 3.8 175 525-705 542-728 (889)
21 KOG0618 Serine/threonine phosp 98.8 2.4E-09 5.2E-14 119.7 2.6 104 522-626 39-145 (1081)
22 COG4886 Leucine-rich repeat (L 98.8 6.1E-09 1.3E-13 113.7 5.1 171 525-704 113-287 (394)
23 PRK15387 E3 ubiquitin-protein 98.8 2.3E-08 4.9E-13 114.9 9.7 89 528-629 222-313 (788)
24 PRK15387 E3 ubiquitin-protein 98.7 3.8E-08 8.2E-13 113.1 10.4 70 526-604 240-309 (788)
25 PF14580 LRR_9: Leucine-rich r 98.7 5.8E-09 1.3E-13 98.5 2.9 82 524-607 15-98 (175)
26 KOG4237 Extracellular matrix p 98.7 1.3E-09 2.9E-14 110.9 -1.7 178 522-705 85-333 (498)
27 KOG0532 Leucine-rich repeat (L 98.7 2E-09 4.3E-14 114.3 -0.7 150 522-679 115-270 (722)
28 cd00116 LRR_RI Leucine-rich re 98.7 3.7E-09 8.1E-14 111.8 1.3 80 525-604 78-172 (319)
29 KOG4237 Extracellular matrix p 98.7 2.2E-09 4.8E-14 109.3 -0.8 101 529-630 68-176 (498)
30 cd00116 LRR_RI Leucine-rich re 98.6 1.8E-08 3.9E-13 106.5 1.4 182 523-705 46-261 (319)
31 PRK00411 cdc6 cell division co 98.6 5.8E-07 1.3E-11 98.1 13.0 111 187-302 32-149 (394)
32 KOG1259 Nischarin, modulator o 98.5 9.6E-09 2.1E-13 100.9 -1.5 129 524-654 280-410 (490)
33 COG2909 MalT ATP-dependent tra 98.5 3E-06 6.5E-11 95.2 17.2 268 194-483 24-340 (894)
34 PF14580 LRR_9: Leucine-rich r 98.5 1.5E-07 3.2E-12 89.0 5.0 103 526-630 40-152 (175)
35 COG4886 Leucine-rich repeat (L 98.5 8.4E-08 1.8E-12 104.7 3.5 150 524-680 135-288 (394)
36 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 5E-12 71.9 4.1 59 528-586 1-61 (61)
37 PF05729 NACHT: NACHT domain 98.4 7.7E-07 1.7E-11 84.2 8.6 114 209-332 1-132 (166)
38 cd01128 rho_factor Transcripti 98.4 4.1E-07 9E-12 91.4 6.9 94 208-302 16-114 (249)
39 PF13401 AAA_22: AAA domain; P 98.4 1.2E-06 2.5E-11 79.5 8.1 114 208-329 4-125 (131)
40 TIGR02928 orc1/cdc6 family rep 98.3 2.4E-06 5.1E-11 92.3 10.9 110 187-302 17-140 (365)
41 TIGR03015 pepcterm_ATPase puta 98.3 1E-05 2.3E-10 83.3 14.9 114 194-313 28-146 (269)
42 PRK09376 rho transcription ter 98.3 6.2E-07 1.3E-11 93.9 5.2 105 196-302 158-267 (416)
43 cd00009 AAA The AAA+ (ATPases 98.3 5.9E-06 1.3E-10 76.0 11.1 123 188-330 1-130 (151)
44 PF13191 AAA_16: AAA ATPase do 98.3 1.3E-06 2.8E-11 84.3 6.9 77 187-265 2-84 (185)
45 PLN03150 hypothetical protein; 98.3 1.3E-06 2.8E-11 100.4 7.8 100 529-629 419-526 (623)
46 KOG3207 Beta-tubulin folding c 98.3 1.8E-07 3.9E-12 96.9 0.1 181 523-704 141-336 (505)
47 PF13173 AAA_14: AAA domain 98.2 2.1E-06 4.6E-11 77.6 6.6 100 208-332 2-101 (128)
48 KOG3207 Beta-tubulin folding c 98.2 2.3E-07 5E-12 96.1 0.2 178 525-705 118-312 (505)
49 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.8E-11 67.6 4.0 56 551-606 1-58 (61)
50 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.4E-11 60.1 3.7 39 552-590 2-40 (44)
51 PTZ00202 tuzin; Provisional 98.0 8.2E-05 1.8E-09 78.6 14.3 98 187-298 264-368 (550)
52 PF01637 Arch_ATPase: Archaeal 98.0 1.5E-05 3.3E-10 79.9 8.4 59 187-249 1-59 (234)
53 KOG1259 Nischarin, modulator o 98.0 8.5E-07 1.8E-11 87.5 -0.7 126 550-680 283-410 (490)
54 TIGR00767 rho transcription te 98.0 1.2E-05 2.5E-10 84.9 7.6 94 208-302 168-266 (415)
55 PRK00080 ruvB Holliday junctio 98.0 5.8E-05 1.3E-09 80.0 13.0 49 183-231 23-74 (328)
56 TIGR00635 ruvB Holliday juncti 98.0 3.7E-05 8E-10 80.8 10.8 46 186-231 5-53 (305)
57 PRK15386 type III secretion pr 98.0 2.9E-05 6.3E-10 82.4 9.8 153 524-704 48-210 (426)
58 PF12799 LRR_4: Leucine Rich r 98.0 7E-06 1.5E-10 58.5 3.6 40 528-567 1-40 (44)
59 PRK13342 recombination factor 97.9 3.9E-05 8.4E-10 84.0 9.1 110 184-326 11-125 (413)
60 PLN03150 hypothetical protein; 97.8 2.8E-05 6E-10 89.5 7.1 101 552-654 419-526 (623)
61 KOG3665 ZYG-1-like serine/thre 97.8 9.2E-06 2E-10 93.3 3.1 146 528-677 122-283 (699)
62 TIGR02903 spore_lon_C ATP-depe 97.8 7.5E-05 1.6E-09 85.4 10.4 147 182-330 151-334 (615)
63 PRK12402 replication factor C 97.8 0.00015 3.3E-09 77.3 11.9 45 184-230 14-58 (337)
64 KOG0531 Protein phosphatase 1, 97.8 2.3E-06 4.9E-11 93.9 -2.6 169 524-705 91-266 (414)
65 KOG0531 Protein phosphatase 1, 97.8 3.4E-06 7.3E-11 92.6 -1.3 149 524-681 114-267 (414)
66 PRK07003 DNA polymerase III su 97.8 0.00022 4.8E-09 80.7 12.8 168 182-368 13-188 (830)
67 COG1474 CDC6 Cdc6-related prot 97.8 0.0002 4.3E-09 76.3 11.9 110 187-302 19-134 (366)
68 PRK14957 DNA polymerase III su 97.7 0.00027 5.8E-09 78.9 12.2 150 182-367 13-187 (546)
69 PTZ00112 origin recognition co 97.7 0.00031 6.7E-09 80.1 12.1 110 187-302 757-880 (1164)
70 PRK05564 DNA polymerase III su 97.7 0.00038 8.1E-09 73.4 12.3 123 186-330 5-133 (313)
71 PRK06893 DNA replication initi 97.7 0.00014 3E-09 72.9 8.5 92 208-330 39-134 (229)
72 PRK14960 DNA polymerase III su 97.7 0.00028 6.1E-09 79.0 11.6 141 182-330 12-158 (702)
73 PRK14961 DNA polymerase III su 97.6 0.00055 1.2E-08 73.6 13.1 140 182-330 13-159 (363)
74 PRK11331 5-methylcytosine-spec 97.6 0.00012 2.5E-09 78.8 7.6 118 187-315 177-298 (459)
75 PLN03025 replication factor C 97.6 0.00055 1.2E-08 72.3 12.6 128 181-330 9-139 (319)
76 KOG1859 Leucine-rich repeat pr 97.6 1.3E-06 2.9E-11 95.6 -7.2 123 529-654 165-290 (1096)
77 KOG2120 SCF ubiquitin ligase, 97.6 4.6E-06 1E-10 82.5 -3.0 75 530-604 187-267 (419)
78 KOG1909 Ran GTPase-activating 97.6 3.3E-05 7.3E-10 78.3 2.4 180 524-705 88-309 (382)
79 PRK14949 DNA polymerase III su 97.6 0.00052 1.1E-08 79.4 12.1 141 182-330 13-159 (944)
80 PRK13341 recombination factor 97.5 0.00034 7.3E-09 81.0 10.2 112 182-327 25-143 (725)
81 PRK14963 DNA polymerase III su 97.5 0.00021 4.5E-09 79.5 8.1 139 182-329 11-155 (504)
82 PRK04195 replication factor C 97.5 0.00067 1.5E-08 75.8 12.1 121 183-329 12-139 (482)
83 KOG2543 Origin recognition com 97.5 0.0005 1.1E-08 70.9 9.8 111 187-302 8-126 (438)
84 KOG4579 Leucine-rich repeat (L 97.5 1E-05 2.2E-10 71.2 -2.1 75 530-604 29-107 (177)
85 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00027 5.9E-09 70.7 7.6 50 192-245 24-73 (226)
86 PRK00440 rfc replication facto 97.5 0.001 2.2E-08 70.4 12.1 126 180-329 12-141 (319)
87 PHA02544 44 clamp loader, smal 97.5 0.00059 1.3E-08 72.1 10.3 123 181-330 17-141 (316)
88 COG2256 MGS1 ATPase related to 97.5 0.0004 8.7E-09 72.3 8.3 92 207-329 47-140 (436)
89 COG3903 Predicted ATPase [Gene 97.4 0.00015 3.2E-09 75.9 4.9 251 207-481 13-314 (414)
90 PRK06645 DNA polymerase III su 97.4 0.0015 3.3E-08 72.4 12.7 145 180-329 16-167 (507)
91 KOG4579 Leucine-rich repeat (L 97.4 3.5E-05 7.7E-10 67.9 -0.1 80 525-604 50-130 (177)
92 PRK08118 topology modulation p 97.4 8.7E-05 1.9E-09 70.3 2.5 35 209-243 2-37 (167)
93 PRK14958 DNA polymerase III su 97.4 0.0013 2.8E-08 73.5 12.0 134 181-330 12-159 (509)
94 PRK08727 hypothetical protein; 97.4 0.00059 1.3E-08 68.5 8.5 37 208-246 41-77 (233)
95 PRK08116 hypothetical protein; 97.4 0.00045 9.7E-09 70.7 7.7 103 209-330 115-221 (268)
96 PRK15386 type III secretion pr 97.4 0.00038 8.1E-09 74.1 7.3 134 547-704 48-187 (426)
97 KOG1909 Ran GTPase-activating 97.4 4.7E-05 1E-09 77.3 0.3 132 548-680 89-252 (382)
98 PRK14962 DNA polymerase III su 97.4 0.0015 3.3E-08 72.0 12.2 49 182-231 11-59 (472)
99 PRK12323 DNA polymerase III su 97.4 0.0015 3.3E-08 73.2 12.0 143 182-330 13-164 (700)
100 PRK14951 DNA polymerase III su 97.4 0.0017 3.6E-08 73.6 12.5 144 182-330 13-164 (618)
101 PRK14964 DNA polymerase III su 97.3 0.0014 3.1E-08 72.1 11.4 141 182-359 10-174 (491)
102 PRK14969 DNA polymerase III su 97.3 0.0024 5.1E-08 71.8 13.4 122 183-330 14-159 (527)
103 PF04665 Pox_A32: Poxvirus A32 97.3 0.00073 1.6E-08 67.0 7.9 36 209-246 14-49 (241)
104 smart00382 AAA ATPases associa 97.3 0.0017 3.7E-08 58.8 9.8 86 209-302 3-89 (148)
105 PRK07994 DNA polymerase III su 97.3 0.002 4.4E-08 73.2 12.0 137 182-330 13-159 (647)
106 TIGR01242 26Sp45 26S proteasom 97.3 0.0011 2.3E-08 71.5 9.3 50 187-238 124-184 (364)
107 PRK05896 DNA polymerase III su 97.3 0.0019 4.1E-08 72.4 11.3 168 180-366 11-186 (605)
108 KOG1859 Leucine-rich repeat pr 97.2 6.5E-06 1.4E-10 90.4 -7.8 122 553-680 166-290 (1096)
109 PRK08691 DNA polymerase III su 97.2 0.0024 5.3E-08 72.4 11.7 48 182-230 13-60 (709)
110 PF00004 AAA: ATPase family as 97.2 0.0014 3E-08 59.1 8.2 21 211-231 1-21 (132)
111 KOG2028 ATPase related to the 97.2 0.0011 2.3E-08 67.8 7.8 98 207-330 161-261 (554)
112 TIGR00678 holB DNA polymerase 97.2 0.006 1.3E-07 59.0 12.8 41 290-330 95-136 (188)
113 PRK14955 DNA polymerase III su 97.2 0.0032 6.9E-08 68.5 11.8 146 181-328 12-165 (397)
114 PF05496 RuvB_N: Holliday junc 97.2 0.00081 1.8E-08 65.4 6.3 56 181-238 20-78 (233)
115 PRK14970 DNA polymerase III su 97.1 0.0055 1.2E-07 66.1 13.5 49 181-230 13-61 (367)
116 TIGR02397 dnaX_nterm DNA polym 97.1 0.0037 7.9E-08 67.2 11.9 49 181-230 10-58 (355)
117 KOG2982 Uncharacterized conser 97.1 0.00014 3.1E-09 72.2 0.5 80 525-604 68-153 (418)
118 PRK05642 DNA replication initi 97.1 0.0021 4.6E-08 64.5 9.0 92 208-330 45-140 (234)
119 PRK08084 DNA replication initi 97.0 0.0019 4.1E-08 64.9 8.1 37 208-246 45-81 (235)
120 KOG3665 ZYG-1-like serine/thre 97.0 0.00035 7.7E-09 80.4 2.9 79 525-604 145-227 (699)
121 PRK14954 DNA polymerase III su 97.0 0.0073 1.6E-07 68.8 13.2 148 181-329 12-166 (620)
122 PF00308 Bac_DnaA: Bacterial d 97.0 0.0032 7E-08 62.4 9.2 121 187-329 11-139 (219)
123 PRK08181 transposase; Validate 97.0 0.002 4.3E-08 65.7 7.8 100 209-330 107-209 (269)
124 PRK14956 DNA polymerase III su 96.9 0.0064 1.4E-07 66.4 11.3 141 181-329 14-160 (484)
125 PRK12608 transcription termina 96.9 0.0025 5.4E-08 67.1 7.8 107 193-302 119-231 (380)
126 PRK14953 DNA polymerase III su 96.9 0.0091 2E-07 66.4 12.6 49 181-230 12-60 (486)
127 KOG1644 U2-associated snRNP A' 96.9 0.00084 1.8E-08 63.4 3.7 101 552-654 43-151 (233)
128 PRK14952 DNA polymerase III su 96.9 0.0081 1.8E-07 67.9 12.2 139 182-329 10-157 (584)
129 PRK08903 DnaA regulatory inact 96.9 0.0039 8.4E-08 62.4 8.8 44 187-230 21-64 (227)
130 PF05621 TniB: Bacterial TniB 96.9 0.0071 1.5E-07 61.7 10.5 104 194-302 46-156 (302)
131 PRK07940 DNA polymerase III su 96.9 0.007 1.5E-07 65.3 11.1 45 186-230 6-58 (394)
132 PRK03992 proteasome-activating 96.9 0.0048 1E-07 66.9 9.9 44 187-230 133-187 (389)
133 PRK07764 DNA polymerase III su 96.9 0.0069 1.5E-07 71.2 11.7 132 181-329 11-159 (824)
134 PRK12377 putative replication 96.8 0.0045 9.8E-08 62.3 8.7 74 208-302 101-174 (248)
135 PRK14088 dnaA chromosomal repl 96.8 0.006 1.3E-07 67.1 10.4 100 208-328 130-235 (440)
136 PRK06526 transposase; Provisio 96.8 0.0026 5.7E-08 64.4 6.9 100 208-330 98-201 (254)
137 PRK07952 DNA replication prote 96.8 0.0054 1.2E-07 61.6 8.9 115 194-328 85-203 (244)
138 PRK09087 hypothetical protein; 96.8 0.004 8.6E-08 62.1 7.7 24 208-231 44-67 (226)
139 PF05673 DUF815: Protein of un 96.8 0.012 2.6E-07 58.2 10.8 114 187-330 29-150 (249)
140 KOG1644 U2-associated snRNP A' 96.8 0.0016 3.4E-08 61.6 4.4 73 531-604 45-120 (233)
141 PRK09111 DNA polymerase III su 96.8 0.012 2.6E-07 66.8 12.3 142 182-328 21-170 (598)
142 CHL00181 cbbX CbbX; Provisiona 96.7 0.012 2.5E-07 61.0 11.0 44 187-230 25-81 (287)
143 PRK00149 dnaA chromosomal repl 96.7 0.0084 1.8E-07 66.5 10.6 101 207-329 147-253 (450)
144 PRK14971 DNA polymerase III su 96.7 0.019 4.1E-07 65.8 13.5 122 181-329 13-160 (614)
145 KOG2120 SCF ubiquitin ligase, 96.7 0.00012 2.7E-09 72.6 -3.5 154 522-680 204-374 (419)
146 TIGR02639 ClpA ATP-dependent C 96.7 0.0062 1.3E-07 71.7 9.9 115 187-316 456-579 (731)
147 PRK14965 DNA polymerase III su 96.7 0.014 3.1E-07 66.4 12.4 48 182-230 13-60 (576)
148 PRK09183 transposase/IS protei 96.7 0.0044 9.6E-08 63.1 7.5 23 208-230 102-124 (259)
149 PRK14950 DNA polymerase III su 96.7 0.0091 2E-07 68.3 10.8 142 181-329 12-159 (585)
150 PRK07133 DNA polymerase III su 96.7 0.014 3.1E-07 66.9 12.1 163 181-367 14-186 (725)
151 TIGR02880 cbbX_cfxQ probable R 96.7 0.012 2.6E-07 60.9 10.7 44 187-230 24-80 (284)
152 KOG2004 Mitochondrial ATP-depe 96.7 0.023 5E-07 63.4 13.1 147 140-302 352-516 (906)
153 TIGR00362 DnaA chromosomal rep 96.6 0.0087 1.9E-07 65.5 9.9 100 208-329 136-241 (405)
154 PHA00729 NTP-binding motif con 96.6 0.0063 1.4E-07 59.8 7.7 33 196-230 7-39 (226)
155 PRK14959 DNA polymerase III su 96.6 0.016 3.5E-07 65.4 11.9 142 181-330 12-159 (624)
156 PRK08451 DNA polymerase III su 96.6 0.029 6.2E-07 62.6 13.5 156 182-359 11-175 (535)
157 PRK10536 hypothetical protein; 96.6 0.009 1.9E-07 59.7 8.5 41 187-231 57-97 (262)
158 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0055 1.2E-07 62.1 7.1 102 208-311 69-183 (274)
159 cd03238 ABC_UvrA The excision 96.6 0.015 3.3E-07 55.4 9.7 114 208-332 21-151 (176)
160 KOG2227 Pre-initiation complex 96.6 0.01 2.2E-07 63.1 9.1 112 187-302 152-267 (529)
161 PRK08939 primosomal protein Dn 96.6 0.0088 1.9E-07 62.3 8.8 114 192-327 138-258 (306)
162 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0059 1.3E-07 72.6 8.3 117 187-317 568-695 (852)
163 PRK06305 DNA polymerase III su 96.5 0.023 4.9E-07 62.8 12.3 49 181-230 13-61 (451)
164 PF01695 IstB_IS21: IstB-like 96.5 0.0012 2.5E-08 63.2 1.7 73 208-302 47-119 (178)
165 PRK14087 dnaA chromosomal repl 96.5 0.012 2.6E-07 65.0 9.7 101 208-328 141-247 (450)
166 cd03214 ABC_Iron-Siderophores_ 96.5 0.013 2.9E-07 56.2 9.0 119 208-331 25-159 (180)
167 TIGR00763 lon ATP-dependent pr 96.5 0.039 8.5E-07 65.4 14.6 131 93-238 224-375 (775)
168 TIGR02881 spore_V_K stage V sp 96.4 0.0092 2E-07 61.0 8.0 44 187-230 8-64 (261)
169 cd03247 ABCC_cytochrome_bd The 96.4 0.013 2.8E-07 56.1 8.6 111 208-332 28-159 (178)
170 PRK07261 topology modulation p 96.4 0.0048 1E-07 58.7 5.5 65 210-302 2-68 (171)
171 PRK06835 DNA replication prote 96.4 0.0094 2E-07 62.7 8.1 101 209-329 184-288 (329)
172 PRK10865 protein disaggregatio 96.4 0.0076 1.6E-07 71.9 8.3 42 187-230 180-221 (857)
173 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.017 3.6E-07 57.7 9.3 124 208-333 30-202 (254)
174 PTZ00454 26S protease regulato 96.4 0.016 3.6E-07 62.6 10.1 47 184-230 144-201 (398)
175 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.011 2.3E-07 59.5 8.1 96 206-302 17-126 (235)
176 TIGR03346 chaperone_ClpB ATP-d 96.4 0.017 3.7E-07 69.1 11.1 119 187-317 567-694 (852)
177 TIGR00602 rad24 checkpoint pro 96.4 0.011 2.3E-07 67.4 8.7 50 181-230 80-132 (637)
178 PRK12422 chromosomal replicati 96.4 0.0092 2E-07 65.6 7.9 100 208-329 141-244 (445)
179 PF13207 AAA_17: AAA domain; P 96.4 0.0024 5.3E-08 56.7 2.8 21 210-230 1-21 (121)
180 PRK07471 DNA polymerase III su 96.4 0.036 7.8E-07 59.3 12.2 137 186-330 20-181 (365)
181 CHL00095 clpC Clp protease ATP 96.4 0.013 2.8E-07 69.9 9.7 119 187-317 511-638 (821)
182 TIGR02639 ClpA ATP-dependent C 96.4 0.0086 1.9E-07 70.5 8.2 42 187-230 184-225 (731)
183 CHL00095 clpC Clp protease ATP 96.3 0.0072 1.6E-07 72.1 7.5 42 187-230 181-222 (821)
184 COG0466 Lon ATP-dependent Lon 96.3 0.029 6.3E-07 62.9 11.5 100 187-302 325-428 (782)
185 COG1373 Predicted ATPase (AAA+ 96.3 0.021 4.6E-07 62.0 10.4 95 210-332 39-133 (398)
186 PRK10865 protein disaggregatio 96.3 0.019 4.1E-07 68.6 10.7 118 187-316 570-696 (857)
187 PRK05563 DNA polymerase III su 96.3 0.061 1.3E-06 61.1 14.3 48 182-230 13-60 (559)
188 PRK06921 hypothetical protein; 96.3 0.0092 2E-07 61.0 7.0 37 208-246 117-154 (266)
189 TIGR02237 recomb_radB DNA repa 96.3 0.013 2.9E-07 57.6 8.0 92 206-301 10-107 (209)
190 PRK14086 dnaA chromosomal repl 96.3 0.019 4.2E-07 64.5 9.8 100 208-329 314-419 (617)
191 PRK09361 radB DNA repair and r 96.2 0.016 3.4E-07 57.9 8.2 92 206-301 21-117 (225)
192 PRK06647 DNA polymerase III su 96.2 0.047 1E-06 61.8 12.7 137 182-329 13-158 (563)
193 PF13671 AAA_33: AAA domain; P 96.2 0.0083 1.8E-07 55.0 5.5 21 210-230 1-21 (143)
194 PRK05541 adenylylsulfate kinas 96.2 0.0079 1.7E-07 57.5 5.6 36 207-244 6-41 (176)
195 cd01393 recA_like RecA is a b 96.2 0.022 4.7E-07 56.8 9.0 94 206-302 17-125 (226)
196 COG2607 Predicted ATPase (AAA+ 96.2 0.045 9.7E-07 53.4 10.4 114 187-330 62-183 (287)
197 PRK04296 thymidine kinase; Pro 96.1 0.011 2.4E-07 57.2 6.4 114 209-332 3-118 (190)
198 PF13177 DNA_pol3_delta2: DNA 96.1 0.064 1.4E-06 50.4 11.4 120 190-331 2-143 (162)
199 PRK09112 DNA polymerase III su 96.1 0.048 1E-06 58.0 11.4 137 187-330 25-181 (351)
200 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.043 9.4E-07 50.5 9.6 97 208-331 26-128 (144)
201 TIGR03345 VI_ClpV1 type VI sec 96.1 0.011 2.3E-07 70.4 7.0 42 187-230 189-230 (852)
202 PRK11889 flhF flagellar biosyn 96.1 0.064 1.4E-06 57.0 11.8 24 207-230 240-263 (436)
203 KOG2982 Uncharacterized conser 96.0 0.0025 5.4E-08 63.6 1.3 97 528-628 45-156 (418)
204 cd03222 ABC_RNaseL_inhibitor T 96.0 0.035 7.6E-07 52.9 9.1 100 208-332 25-134 (177)
205 COG5238 RNA1 Ran GTPase-activa 96.0 0.0042 9.1E-08 61.3 2.8 177 525-704 27-252 (388)
206 cd03223 ABCD_peroxisomal_ALDP 96.0 0.049 1.1E-06 51.5 10.1 116 208-332 27-150 (166)
207 TIGR03689 pup_AAA proteasome A 96.0 0.013 2.8E-07 64.9 6.9 45 187-231 184-239 (512)
208 KOG2739 Leucine-rich acidic nu 96.0 0.0036 7.8E-08 61.7 2.3 90 523-613 60-162 (260)
209 COG0572 Udk Uridine kinase [Nu 96.0 0.016 3.5E-07 56.3 6.7 76 207-292 7-85 (218)
210 PRK06696 uridine kinase; Valid 96.0 0.0073 1.6E-07 60.2 4.5 41 190-230 3-44 (223)
211 smart00763 AAA_PrkA PrkA AAA d 96.0 0.0051 1.1E-07 64.6 3.4 45 187-231 53-101 (361)
212 PRK06620 hypothetical protein; 96.0 0.013 2.8E-07 57.8 6.1 23 209-231 45-67 (214)
213 PF14532 Sigma54_activ_2: Sigm 96.0 0.013 2.8E-07 53.5 5.6 108 188-331 1-111 (138)
214 PF00560 LRR_1: Leucine Rich R 96.0 0.003 6.4E-08 37.5 0.9 19 553-571 2-20 (22)
215 cd01120 RecA-like_NTPases RecA 96.0 0.039 8.4E-07 51.4 9.1 39 210-250 1-39 (165)
216 cd01131 PilT Pilus retraction 95.9 0.016 3.5E-07 56.5 6.5 107 209-332 2-111 (198)
217 TIGR03346 chaperone_ClpB ATP-d 95.9 0.014 3E-07 69.9 7.0 42 187-230 175-216 (852)
218 TIGR02640 gas_vesic_GvpN gas v 95.9 0.078 1.7E-06 54.2 11.7 53 194-255 11-63 (262)
219 PRK14948 DNA polymerase III su 95.9 0.064 1.4E-06 61.5 12.0 142 183-330 14-161 (620)
220 PRK11034 clpA ATP-dependent Cl 95.9 0.014 3E-07 68.2 6.7 115 187-316 460-583 (758)
221 TIGR01166 cbiO cobalt transpor 95.9 0.063 1.4E-06 51.9 10.3 24 208-231 18-41 (190)
222 PRK07667 uridine kinase; Provi 95.9 0.011 2.4E-07 57.4 5.0 37 194-230 3-39 (193)
223 COG0470 HolB ATPase involved i 95.8 0.066 1.4E-06 56.6 11.2 122 187-330 3-149 (325)
224 PF08423 Rad51: Rad51; InterP 95.8 0.02 4.3E-07 58.2 6.7 95 207-302 37-144 (256)
225 PRK06762 hypothetical protein; 95.8 0.047 1E-06 51.5 8.9 23 208-230 2-24 (166)
226 COG0542 clpA ATP-binding subun 95.8 0.034 7.3E-07 64.0 9.0 114 187-317 493-620 (786)
227 PF00485 PRK: Phosphoribulokin 95.8 0.035 7.5E-07 54.0 8.0 82 210-295 1-87 (194)
228 cd03228 ABCC_MRP_Like The MRP 95.8 0.034 7.3E-07 52.9 7.7 117 208-331 28-156 (171)
229 TIGR02012 tigrfam_recA protein 95.7 0.018 3.9E-07 60.0 6.2 90 206-302 53-144 (321)
230 PRK10787 DNA-binding ATP-depen 95.7 0.097 2.1E-06 61.7 12.9 95 142-238 265-377 (784)
231 cd03216 ABC_Carb_Monos_I This 95.7 0.031 6.7E-07 52.7 7.3 113 208-331 26-143 (163)
232 cd00983 recA RecA is a bacter 95.7 0.02 4.3E-07 59.8 6.2 90 206-302 53-144 (325)
233 COG2884 FtsE Predicted ATPase 95.7 0.067 1.5E-06 50.4 8.9 122 207-333 27-200 (223)
234 PRK13543 cytochrome c biogenes 95.7 0.087 1.9E-06 52.1 10.6 125 208-332 37-199 (214)
235 cd03217 ABC_FeS_Assembly ABC-t 95.7 0.042 9.2E-07 53.7 8.2 118 208-332 26-166 (200)
236 COG2255 RuvB Holliday junction 95.7 0.0093 2E-07 59.5 3.5 54 183-238 24-80 (332)
237 cd03235 ABC_Metallic_Cations A 95.7 0.065 1.4E-06 52.9 9.6 24 208-231 25-48 (213)
238 PRK08233 hypothetical protein; 95.6 0.034 7.3E-07 53.3 7.3 23 208-230 3-25 (182)
239 CHL00176 ftsH cell division pr 95.6 0.063 1.4E-06 61.6 10.3 95 183-301 181-285 (638)
240 cd03246 ABCC_Protease_Secretio 95.6 0.047 1E-06 51.9 8.0 116 208-331 28-157 (173)
241 PF02562 PhoH: PhoH-like prote 95.6 0.04 8.6E-07 53.6 7.4 124 190-328 5-154 (205)
242 KOG0733 Nuclear AAA ATPase (VC 95.6 0.039 8.4E-07 60.6 7.9 92 187-302 192-293 (802)
243 PRK09270 nucleoside triphospha 95.6 0.051 1.1E-06 54.4 8.5 26 205-230 30-55 (229)
244 PRK04301 radA DNA repair and r 95.6 0.069 1.5E-06 56.3 9.9 96 206-302 100-209 (317)
245 TIGR02238 recomb_DMC1 meiotic 95.5 0.056 1.2E-06 56.6 9.0 96 206-302 94-202 (313)
246 PTZ00301 uridine kinase; Provi 95.5 0.014 3.1E-07 57.3 4.2 29 208-238 3-31 (210)
247 COG1484 DnaC DNA replication p 95.5 0.034 7.3E-07 56.4 6.9 75 207-302 104-178 (254)
248 TIGR01189 ccmA heme ABC export 95.5 0.11 2.4E-06 50.5 10.4 24 208-231 26-49 (198)
249 cd03229 ABC_Class3 This class 95.5 0.054 1.2E-06 51.8 8.0 24 208-231 26-49 (178)
250 PRK09354 recA recombinase A; P 95.5 0.027 5.9E-07 59.2 6.3 90 206-302 58-149 (349)
251 TIGR02858 spore_III_AA stage I 95.5 0.21 4.5E-06 51.1 12.5 127 193-332 97-231 (270)
252 cd03225 ABC_cobalt_CbiO_domain 95.4 0.1 2.2E-06 51.3 10.2 24 208-231 27-50 (211)
253 cd03230 ABC_DR_subfamily_A Thi 95.4 0.071 1.5E-06 50.7 8.7 109 208-332 26-157 (173)
254 COG0593 DnaA ATPase involved i 95.4 0.032 6.9E-07 59.7 6.7 103 207-330 112-218 (408)
255 TIGR03864 PQQ_ABC_ATP ABC tran 95.4 0.11 2.3E-06 52.3 10.3 50 283-332 142-195 (236)
256 COG4608 AppF ABC-type oligopep 95.4 0.056 1.2E-06 54.2 7.9 126 207-333 38-173 (268)
257 cd01394 radB RadB. The archaea 95.4 0.067 1.5E-06 53.0 8.6 93 206-302 17-114 (218)
258 PLN03187 meiotic recombination 95.3 0.071 1.5E-06 56.3 9.0 96 206-302 124-232 (344)
259 PRK13540 cytochrome c biogenes 95.3 0.15 3.2E-06 49.8 10.8 124 208-331 27-188 (200)
260 cd03226 ABC_cobalt_CbiO_domain 95.3 0.15 3.4E-06 49.9 10.9 121 208-331 26-187 (205)
261 PRK11034 clpA ATP-dependent Cl 95.3 0.033 7.2E-07 65.1 7.1 42 187-230 188-229 (758)
262 COG1126 GlnQ ABC-type polar am 95.3 0.17 3.8E-06 48.8 10.5 123 208-333 28-199 (240)
263 PRK15455 PrkA family serine pr 95.3 0.018 3.8E-07 63.8 4.4 45 186-230 77-125 (644)
264 PRK09544 znuC high-affinity zi 95.3 0.081 1.8E-06 53.7 9.1 123 208-332 30-183 (251)
265 PTZ00361 26 proteosome regulat 95.3 0.025 5.4E-07 61.8 5.5 54 183-238 181-245 (438)
266 cd03281 ABC_MSH5_euk MutS5 hom 95.3 0.023 5.1E-07 56.0 4.8 120 208-333 29-157 (213)
267 COG1136 SalX ABC-type antimicr 95.3 0.057 1.2E-06 53.1 7.4 124 208-333 31-206 (226)
268 cd03269 ABC_putative_ATPase Th 95.2 0.11 2.3E-06 51.2 9.5 24 208-231 26-49 (210)
269 PF00560 LRR_1: Leucine Rich R 95.2 0.0076 1.6E-07 35.8 0.8 22 575-596 1-22 (22)
270 PRK13541 cytochrome c biogenes 95.2 0.17 3.6E-06 49.2 10.7 24 208-231 26-49 (195)
271 cd03237 ABC_RNaseL_inhibitor_d 95.2 0.13 2.7E-06 52.1 10.1 124 208-333 25-179 (246)
272 TIGR02239 recomb_RAD51 DNA rep 95.2 0.081 1.8E-06 55.5 8.9 102 200-302 88-202 (316)
273 cd03213 ABCG_EPDR ABCG transpo 95.2 0.11 2.3E-06 50.5 9.2 117 208-331 35-172 (194)
274 cd03264 ABC_drug_resistance_li 95.2 0.045 9.8E-07 54.0 6.6 22 210-231 27-48 (211)
275 PRK08058 DNA polymerase III su 95.2 0.21 4.5E-06 52.9 12.0 156 187-368 7-179 (329)
276 KOG1532 GTPase XAB1, interacts 95.2 0.058 1.3E-06 53.5 7.1 61 206-268 17-88 (366)
277 PRK15056 manganese/iron transp 95.2 0.17 3.6E-06 52.1 11.1 24 208-231 33-56 (272)
278 cd00267 ABC_ATPase ABC (ATP-bi 95.2 0.071 1.5E-06 49.8 7.6 112 208-331 25-141 (157)
279 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.068 1.5E-06 51.3 7.7 21 210-230 1-21 (183)
280 PRK10867 signal recognition pa 95.2 0.11 2.3E-06 56.7 9.9 24 207-230 99-122 (433)
281 COG1120 FepC ABC-type cobalami 95.2 0.084 1.8E-06 53.0 8.4 127 207-333 27-202 (258)
282 cd03278 ABC_SMC_barmotin Barmo 95.1 0.2 4.3E-06 48.8 10.9 20 210-229 24-43 (197)
283 PF00448 SRP54: SRP54-type pro 95.1 0.047 1E-06 53.1 6.4 56 208-265 1-57 (196)
284 TIGR03771 anch_rpt_ABC anchore 95.1 0.16 3.5E-06 50.5 10.5 49 283-331 123-174 (223)
285 cd03231 ABC_CcmA_heme_exporter 95.1 0.079 1.7E-06 51.8 8.1 123 208-330 26-185 (201)
286 PRK08972 fliI flagellum-specif 95.1 0.044 9.4E-07 59.3 6.7 99 208-310 162-271 (444)
287 cd03115 SRP The signal recogni 95.1 0.14 3E-06 48.6 9.6 21 210-230 2-22 (173)
288 PRK00771 signal recognition pa 95.1 0.21 4.6E-06 54.6 12.0 90 207-302 94-186 (437)
289 TIGR00960 3a0501s02 Type II (G 95.1 0.19 4.2E-06 49.6 10.9 24 208-231 29-52 (216)
290 TIGR03499 FlhF flagellar biosy 95.1 0.06 1.3E-06 55.7 7.4 24 207-230 193-216 (282)
291 PLN00020 ribulose bisphosphate 95.1 0.033 7.1E-07 58.4 5.4 31 206-238 146-176 (413)
292 KOG2123 Uncharacterized conser 95.1 0.0034 7.4E-08 62.1 -1.6 75 528-604 19-95 (388)
293 PRK05480 uridine/cytidine kina 95.0 0.018 3.9E-07 56.7 3.3 24 207-230 5-28 (209)
294 COG4618 ArpD ABC-type protease 95.0 0.13 2.8E-06 55.7 9.7 23 208-230 362-384 (580)
295 PRK11248 tauB taurine transpor 95.0 0.17 3.6E-06 51.6 10.4 24 208-231 27-50 (255)
296 cd03258 ABC_MetN_methionine_tr 95.0 0.12 2.5E-06 51.9 9.2 24 208-231 31-54 (233)
297 TIGR00959 ffh signal recogniti 95.0 0.2 4.4E-06 54.6 11.5 24 207-230 98-121 (428)
298 cd03266 ABC_NatA_sodium_export 95.0 0.14 3E-06 50.8 9.5 24 208-231 31-54 (218)
299 COG1875 NYN ribonuclease and A 95.0 0.086 1.9E-06 54.6 8.0 41 187-229 226-266 (436)
300 COG1618 Predicted nucleotide k 95.0 0.018 3.8E-07 52.7 2.7 30 208-239 5-35 (179)
301 COG1419 FlhF Flagellar GTP-bin 95.0 0.39 8.5E-06 51.1 13.0 102 208-317 203-310 (407)
302 TIGR03608 L_ocin_972_ABC putat 95.0 0.16 3.5E-06 49.7 9.9 50 282-331 143-195 (206)
303 PRK11124 artP arginine transpo 95.0 0.18 4E-06 50.8 10.5 49 284-332 152-203 (242)
304 PRK13650 cbiO cobalt transport 95.0 0.13 2.9E-06 53.1 9.6 51 282-332 149-203 (279)
305 PRK13695 putative NTPase; Prov 94.9 0.011 2.3E-07 56.5 1.4 22 210-231 2-23 (174)
306 TIGR00235 udk uridine kinase. 94.9 0.02 4.3E-07 56.3 3.3 24 207-230 5-28 (207)
307 COG1124 DppF ABC-type dipeptid 94.9 0.12 2.7E-06 50.7 8.5 126 208-333 33-205 (252)
308 PRK06547 hypothetical protein; 94.9 0.034 7.3E-07 52.8 4.7 33 197-231 6-38 (172)
309 PRK06067 flagellar accessory p 94.9 0.15 3.3E-06 51.1 9.8 120 206-330 23-165 (234)
310 TIGR03522 GldA_ABC_ATP gliding 94.9 0.15 3.2E-06 53.4 10.0 24 208-231 28-51 (301)
311 PF13238 AAA_18: AAA domain; P 94.9 0.017 3.8E-07 51.6 2.6 20 211-230 1-20 (129)
312 cd03263 ABC_subfamily_A The AB 94.9 0.16 3.4E-06 50.4 9.8 50 283-332 143-194 (220)
313 PRK10247 putative ABC transpor 94.9 0.16 3.4E-06 50.7 9.7 50 283-332 147-200 (225)
314 TIGR01277 thiQ thiamine ABC tr 94.9 0.18 3.9E-06 49.8 10.0 24 208-231 24-47 (213)
315 cd03215 ABC_Carb_Monos_II This 94.9 0.17 3.7E-06 48.6 9.6 48 283-330 114-164 (182)
316 PRK14527 adenylate kinase; Pro 94.9 0.099 2.1E-06 50.6 8.0 24 207-230 5-28 (191)
317 PRK11247 ssuB aliphatic sulfon 94.9 0.21 4.6E-06 50.9 10.7 124 208-332 38-196 (257)
318 PRK13647 cbiO cobalt transport 94.9 0.14 3.1E-06 52.7 9.6 51 282-332 147-200 (274)
319 PRK12724 flagellar biosynthesi 94.9 0.11 2.3E-06 56.0 8.7 23 208-230 223-245 (432)
320 KOG2123 Uncharacterized conser 94.8 0.0029 6.3E-08 62.6 -2.8 82 522-604 35-124 (388)
321 TIGR03411 urea_trans_UrtD urea 94.8 0.22 4.9E-06 50.1 10.8 24 208-231 28-51 (242)
322 PRK14974 cell division protein 94.8 0.15 3.3E-06 53.7 9.7 101 207-313 139-247 (336)
323 PRK13538 cytochrome c biogenes 94.8 0.17 3.7E-06 49.6 9.6 24 208-231 27-50 (204)
324 KOG0991 Replication factor C, 94.8 0.054 1.2E-06 52.5 5.6 46 183-230 25-70 (333)
325 PRK13539 cytochrome c biogenes 94.8 0.2 4.4E-06 49.2 10.1 49 283-331 137-188 (207)
326 cd03236 ABC_RNaseL_inhibitor_d 94.8 0.17 3.6E-06 51.5 9.7 24 208-231 26-49 (255)
327 TIGR00064 ftsY signal recognit 94.8 0.26 5.6E-06 50.6 11.1 24 207-230 71-94 (272)
328 cd03268 ABC_BcrA_bacitracin_re 94.8 0.12 2.6E-06 50.8 8.5 49 284-332 137-188 (208)
329 PRK13531 regulatory ATPase Rav 94.8 0.047 1E-06 59.6 5.9 40 187-230 22-61 (498)
330 COG0488 Uup ATPase components 94.8 0.29 6.2E-06 54.9 12.2 122 208-331 348-497 (530)
331 TIGR01241 FtsH_fam ATP-depende 94.8 0.11 2.5E-06 58.3 9.2 48 184-231 54-111 (495)
332 PRK13648 cbiO cobalt transport 94.8 0.18 4E-06 51.7 10.0 24 208-231 35-58 (269)
333 PLN03186 DNA repair protein RA 94.8 0.16 3.5E-06 53.7 9.7 102 200-302 115-229 (342)
334 PRK14250 phosphate ABC transpo 94.7 0.18 4E-06 50.8 9.8 123 208-332 29-194 (241)
335 KOG0924 mRNA splicing factor A 94.7 0.13 2.7E-06 57.2 8.8 135 192-336 359-516 (1042)
336 PRK06002 fliI flagellum-specif 94.7 0.082 1.8E-06 57.5 7.4 92 208-302 165-265 (450)
337 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.12 2.6E-06 48.1 7.5 116 209-331 3-139 (159)
338 PRK14722 flhF flagellar biosyn 94.7 0.2 4.3E-06 53.5 10.2 87 208-302 137-226 (374)
339 TIGR02868 CydC thiol reductant 94.7 0.19 4.1E-06 57.2 10.8 25 207-231 360-384 (529)
340 TIGR03873 F420-0_ABC_ATP propo 94.7 0.25 5.3E-06 50.4 10.6 50 283-332 147-199 (256)
341 PF13604 AAA_30: AAA domain; P 94.7 0.18 4E-06 49.0 9.2 114 196-327 8-128 (196)
342 PRK11629 lolD lipoprotein tran 94.7 0.29 6.3E-06 49.0 11.0 50 283-332 155-208 (233)
343 TIGR02236 recomb_radA DNA repa 94.7 0.16 3.4E-06 53.4 9.4 96 206-302 93-203 (310)
344 PRK11608 pspF phage shock prot 94.6 0.083 1.8E-06 55.9 7.3 131 187-330 8-151 (326)
345 KOG1514 Origin recognition com 94.6 0.32 7E-06 54.7 11.8 134 187-327 398-546 (767)
346 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.6 0.13 2.9E-06 51.2 8.3 24 208-231 48-71 (224)
347 PRK11701 phnK phosphonate C-P 94.6 0.21 4.5E-06 51.0 9.9 24 208-231 32-55 (258)
348 KOG2739 Leucine-rich acidic nu 94.6 0.02 4.4E-07 56.5 2.2 109 586-701 35-150 (260)
349 PRK15429 formate hydrogenlyase 94.6 0.11 2.4E-06 60.9 8.9 131 187-330 378-521 (686)
350 cd03240 ABC_Rad50 The catalyti 94.6 0.18 3.8E-06 49.5 8.9 50 283-332 131-185 (204)
351 cd02025 PanK Pantothenate kina 94.6 0.11 2.3E-06 51.7 7.4 21 210-230 1-21 (220)
352 cd03232 ABC_PDR_domain2 The pl 94.6 0.13 2.9E-06 49.8 8.0 118 208-331 33-169 (192)
353 cd01135 V_A-ATPase_B V/A-type 94.6 0.12 2.6E-06 52.4 7.8 106 208-313 69-188 (276)
354 cd03282 ABC_MSH4_euk MutS4 hom 94.5 0.042 9.1E-07 53.8 4.4 118 208-333 29-154 (204)
355 TIGR01188 drrA daunorubicin re 94.5 0.064 1.4E-06 56.1 6.0 24 208-231 19-42 (302)
356 cd02019 NK Nucleoside/nucleoti 94.5 0.026 5.7E-07 44.5 2.3 21 210-230 1-21 (69)
357 cd03267 ABC_NatA_like Similar 94.5 0.2 4.4E-06 50.3 9.3 50 283-332 163-216 (236)
358 PRK08149 ATP synthase SpaL; Va 94.5 0.14 2.9E-06 55.6 8.4 91 208-302 151-252 (428)
359 cd03298 ABC_ThiQ_thiamine_tran 94.4 0.11 2.3E-06 51.3 7.1 49 283-331 138-190 (211)
360 PRK05707 DNA polymerase III su 94.4 0.59 1.3E-05 49.3 13.0 41 290-330 105-146 (328)
361 PRK08927 fliI flagellum-specif 94.4 0.097 2.1E-06 56.8 7.1 92 207-302 157-259 (442)
362 cd03283 ABC_MutS-like MutS-lik 94.4 0.12 2.6E-06 50.4 7.2 22 209-230 26-47 (199)
363 TIGR03740 galliderm_ABC gallid 94.4 0.22 4.7E-06 49.6 9.3 50 283-332 134-186 (223)
364 PTZ00035 Rad51 protein; Provis 94.4 0.22 4.8E-06 52.7 9.7 102 200-302 110-224 (337)
365 TIGR00390 hslU ATP-dependent p 94.4 0.09 2E-06 56.4 6.6 74 187-262 14-103 (441)
366 PRK12723 flagellar biosynthesi 94.3 0.34 7.3E-06 52.2 10.9 102 207-315 173-281 (388)
367 PRK11264 putative amino-acid A 94.3 0.36 7.8E-06 48.9 10.9 24 208-231 29-52 (250)
368 PRK12597 F0F1 ATP synthase sub 94.3 0.086 1.9E-06 57.7 6.5 94 208-302 143-248 (461)
369 PRK13634 cbiO cobalt transport 94.3 0.27 6E-06 51.0 10.1 51 282-332 154-208 (290)
370 PRK11300 livG leucine/isoleuci 94.3 0.26 5.6E-06 50.1 9.7 24 208-231 31-54 (255)
371 cd03244 ABCC_MRP_domain2 Domai 94.2 0.17 3.8E-06 50.1 8.2 24 208-231 30-53 (221)
372 cd01121 Sms Sms (bacterial rad 94.2 0.2 4.4E-06 53.7 9.1 88 207-302 81-169 (372)
373 PRK13639 cbiO cobalt transport 94.2 0.27 5.9E-06 50.6 9.8 50 283-332 147-199 (275)
374 cd03300 ABC_PotA_N PotA is an 94.2 0.3 6.4E-06 48.9 9.9 50 282-331 139-192 (232)
375 PRK15439 autoinducer 2 ABC tra 94.2 0.33 7.2E-06 54.8 11.3 123 208-332 37-202 (510)
376 cd03219 ABC_Mj1267_LivG_branch 94.2 0.33 7.1E-06 48.7 10.2 24 208-231 26-49 (236)
377 PRK00279 adk adenylate kinase; 94.2 0.13 2.7E-06 51.0 7.0 21 210-230 2-22 (215)
378 cd01136 ATPase_flagellum-secre 94.2 0.16 3.5E-06 53.2 8.0 91 208-302 69-170 (326)
379 TIGR00991 3a0901s02IAP34 GTP-b 94.2 0.29 6.2E-06 50.6 9.7 40 193-232 23-62 (313)
380 PRK13548 hmuV hemin importer A 94.2 0.34 7.4E-06 49.4 10.4 24 208-231 28-51 (258)
381 PRK13652 cbiO cobalt transport 94.2 0.32 7E-06 50.2 10.3 51 282-332 146-200 (277)
382 cd01132 F1_ATPase_alpha F1 ATP 94.2 0.16 3.5E-06 51.5 7.6 101 208-314 69-184 (274)
383 PRK13545 tagH teichoic acids e 94.2 0.32 7E-06 54.1 10.6 125 208-332 50-205 (549)
384 TIGR02974 phageshock_pspF psp 94.1 0.24 5.3E-06 52.4 9.4 45 187-231 1-45 (329)
385 cd03369 ABCC_NFT1 Domain 2 of 94.1 0.42 9.1E-06 46.9 10.6 50 283-332 135-186 (207)
386 PRK07399 DNA polymerase III su 94.1 0.32 6.9E-06 51.0 10.1 138 187-330 6-163 (314)
387 cd02023 UMPK Uridine monophosp 94.1 0.03 6.5E-07 54.6 2.3 21 210-230 1-21 (198)
388 TIGR03005 ectoine_ehuA ectoine 94.1 0.26 5.7E-06 50.0 9.4 24 208-231 26-49 (252)
389 COG5238 RNA1 Ran GTPase-activa 94.1 0.019 4.1E-07 56.8 0.9 182 522-705 86-314 (388)
390 cd03294 ABC_Pro_Gly_Bertaine T 94.1 0.32 6.9E-06 49.9 10.0 24 208-231 50-73 (269)
391 PRK03839 putative kinase; Prov 94.1 0.034 7.4E-07 53.3 2.6 21 210-230 2-22 (180)
392 TIGR01069 mutS2 MutS2 family p 94.1 0.029 6.2E-07 66.0 2.4 122 207-333 321-448 (771)
393 KOG0473 Leucine-rich repeat pr 94.1 0.0023 4.9E-08 61.7 -5.4 81 525-605 39-119 (326)
394 PRK13643 cbiO cobalt transport 94.0 0.43 9.4E-06 49.5 11.0 51 282-332 153-206 (288)
395 TIGR01243 CDC48 AAA family ATP 94.0 0.11 2.3E-06 61.5 7.2 44 187-230 180-234 (733)
396 PRK06217 hypothetical protein; 94.0 0.084 1.8E-06 50.8 5.2 23 209-231 2-24 (183)
397 PRK04040 adenylate kinase; Pro 94.0 0.041 8.9E-07 53.1 3.0 47 208-265 2-48 (188)
398 cd03243 ABC_MutS_homologs The 94.0 0.054 1.2E-06 53.0 3.9 22 209-230 30-51 (202)
399 cd02027 APSK Adenosine 5'-phos 94.0 0.36 7.9E-06 44.6 9.2 21 210-230 1-21 (149)
400 PRK09280 F0F1 ATP synthase sub 94.0 0.1 2.2E-06 57.0 6.3 94 208-302 144-249 (463)
401 TIGR01360 aden_kin_iso1 adenyl 94.0 0.043 9.2E-07 52.9 3.1 24 207-230 2-25 (188)
402 PF12775 AAA_7: P-loop contain 93.9 0.064 1.4E-06 55.0 4.5 34 194-230 22-55 (272)
403 cd01129 PulE-GspE PulE/GspE Th 93.9 0.18 3.9E-06 51.5 7.7 105 188-309 62-166 (264)
404 TIGR01040 V-ATPase_V1_B V-type 93.9 0.12 2.7E-06 56.0 6.7 104 208-311 141-267 (466)
405 PTZ00185 ATPase alpha subunit; 93.9 0.2 4.4E-06 54.8 8.4 103 208-310 189-308 (574)
406 KOG0744 AAA+-type ATPase [Post 93.9 0.16 3.4E-06 51.8 7.0 81 208-302 177-261 (423)
407 PTZ00088 adenylate kinase 1; P 93.9 0.13 2.8E-06 51.3 6.4 21 210-230 8-28 (229)
408 PRK13409 putative ATPase RIL; 93.9 0.25 5.4E-06 56.7 9.6 124 208-333 365-517 (590)
409 KOG1051 Chaperone HSP104 and r 93.9 0.44 9.6E-06 55.9 11.6 129 187-330 564-710 (898)
410 PRK09099 type III secretion sy 93.9 0.14 3.1E-06 55.8 7.1 92 208-302 163-264 (441)
411 PRK13537 nodulation ABC transp 93.9 0.29 6.2E-06 51.3 9.3 24 208-231 33-56 (306)
412 COG1102 Cmk Cytidylate kinase 93.9 0.069 1.5E-06 49.0 3.9 44 210-266 2-45 (179)
413 PRK15064 ABC transporter ATP-b 93.8 0.49 1.1E-05 53.8 11.9 49 283-333 165-215 (530)
414 PF00006 ATP-synt_ab: ATP synt 93.8 0.057 1.2E-06 53.1 3.7 88 209-302 16-116 (215)
415 PRK05201 hslU ATP-dependent pr 93.8 0.11 2.3E-06 55.9 5.9 75 187-263 17-107 (443)
416 PRK10938 putative molybdenum t 93.8 0.38 8.3E-06 54.1 10.9 24 208-231 29-52 (490)
417 cd02024 NRK1 Nicotinamide ribo 93.8 0.037 8E-07 53.2 2.3 22 210-231 1-22 (187)
418 PRK05703 flhF flagellar biosyn 93.8 0.39 8.4E-06 52.6 10.5 23 208-230 221-243 (424)
419 PF00154 RecA: recA bacterial 93.8 0.19 4.1E-06 52.4 7.6 90 206-302 51-142 (322)
420 TIGR00150 HI0065_YjeE ATPase, 93.8 0.075 1.6E-06 47.8 4.0 39 193-231 7-45 (133)
421 TIGR03305 alt_F1F0_F1_bet alte 93.8 0.13 2.7E-06 56.1 6.5 94 208-302 138-243 (449)
422 PRK11153 metN DL-methionine tr 93.7 0.36 7.9E-06 51.4 9.9 50 283-332 150-203 (343)
423 TIGR01817 nifA Nif-specific re 93.7 0.3 6.5E-06 55.5 9.9 45 187-231 198-242 (534)
424 PRK13409 putative ATPase RIL; 93.7 0.27 5.9E-06 56.4 9.4 24 208-231 99-122 (590)
425 PRK06936 type III secretion sy 93.7 0.15 3.3E-06 55.3 7.0 91 208-302 162-263 (439)
426 PRK12726 flagellar biosynthesi 93.7 0.61 1.3E-05 49.6 11.1 101 207-314 205-311 (407)
427 KOG0735 AAA+-type ATPase [Post 93.7 0.14 3.1E-06 57.3 6.7 73 208-302 431-505 (952)
428 PRK13644 cbiO cobalt transport 93.7 0.4 8.7E-06 49.4 9.9 24 208-231 28-51 (274)
429 PRK14528 adenylate kinase; Pro 93.7 0.23 5E-06 47.9 7.6 22 209-230 2-23 (186)
430 TIGR02322 phosphon_PhnN phosph 93.7 0.049 1.1E-06 52.1 2.9 23 209-231 2-24 (179)
431 PRK14738 gmk guanylate kinase; 93.7 0.056 1.2E-06 53.1 3.4 31 200-230 5-35 (206)
432 TIGR03498 FliI_clade3 flagella 93.7 0.13 2.7E-06 55.9 6.2 91 208-302 140-241 (418)
433 PRK12727 flagellar biosynthesi 93.7 0.15 3.3E-06 56.3 6.9 24 207-230 349-372 (559)
434 cd03289 ABCC_CFTR2 The CFTR su 93.7 0.39 8.4E-06 49.4 9.6 24 208-231 30-53 (275)
435 PRK05022 anaerobic nitric oxid 93.6 0.16 3.6E-06 57.2 7.5 45 187-231 189-233 (509)
436 PRK10751 molybdopterin-guanine 93.6 0.06 1.3E-06 50.8 3.3 24 207-230 5-28 (173)
437 TIGR03877 thermo_KaiC_1 KaiC d 93.6 0.34 7.3E-06 48.7 9.0 97 201-302 14-137 (237)
438 PF03029 ATP_bind_1: Conserved 93.6 0.047 1E-06 54.8 2.8 19 213-231 1-19 (238)
439 cd03299 ABC_ModC_like Archeal 93.6 0.49 1.1E-05 47.5 10.2 24 208-231 25-48 (235)
440 COG1131 CcmA ABC-type multidru 93.6 0.51 1.1E-05 49.0 10.5 125 208-333 31-200 (293)
441 PRK12678 transcription termina 93.6 0.091 2E-06 58.2 5.0 103 197-302 406-514 (672)
442 COG0563 Adk Adenylate kinase a 93.6 0.19 4.1E-06 48.0 6.6 22 210-231 2-23 (178)
443 TIGR03496 FliI_clade1 flagella 93.6 0.18 3.9E-06 54.7 7.3 91 208-302 137-238 (411)
444 PRK09519 recA DNA recombinatio 93.6 0.22 4.7E-06 58.0 8.2 89 206-301 58-148 (790)
445 PRK14269 phosphate ABC transpo 93.5 0.63 1.4E-05 47.0 10.8 24 208-231 28-51 (246)
446 PRK00625 shikimate kinase; Pro 93.5 0.049 1.1E-06 51.7 2.5 21 210-230 2-22 (173)
447 PRK06793 fliI flagellum-specif 93.5 0.17 3.6E-06 55.1 6.8 103 208-313 156-268 (432)
448 PLN02318 phosphoribulokinase/u 93.5 0.087 1.9E-06 58.8 4.7 34 197-230 54-87 (656)
449 PRK10463 hydrogenase nickel in 93.5 0.2 4.3E-06 51.4 6.9 91 206-302 102-195 (290)
450 PF07726 AAA_3: ATPase family 93.5 0.039 8.4E-07 48.9 1.6 27 211-239 2-28 (131)
451 COG1428 Deoxynucleoside kinase 93.4 0.054 1.2E-06 52.1 2.6 24 208-231 4-27 (216)
452 PF13504 LRR_7: Leucine rich r 93.4 0.045 9.8E-07 30.1 1.3 13 553-565 3-15 (17)
453 PRK13651 cobalt transporter AT 93.4 0.52 1.1E-05 49.3 10.2 24 208-231 33-56 (305)
454 TIGR00382 clpX endopeptidase C 93.4 0.4 8.7E-06 52.0 9.6 44 187-230 79-138 (413)
455 cd03280 ABC_MutS2 MutS2 homolo 93.4 0.079 1.7E-06 51.8 3.9 22 208-229 28-49 (200)
456 KOG0989 Replication factor C, 93.4 0.23 4.9E-06 50.4 7.0 128 185-329 36-168 (346)
457 cd02028 UMPK_like Uridine mono 93.4 0.051 1.1E-06 52.1 2.4 21 210-230 1-21 (179)
458 KOG0733 Nuclear AAA ATPase (VC 93.4 0.18 3.9E-06 55.6 6.7 71 208-302 545-615 (802)
459 PRK00889 adenylylsulfate kinas 93.4 0.069 1.5E-06 50.9 3.3 23 208-230 4-26 (175)
460 PRK13635 cbiO cobalt transport 93.3 0.18 3.8E-06 52.2 6.6 50 283-332 150-203 (279)
461 TIGR03263 guanyl_kin guanylate 93.3 0.061 1.3E-06 51.5 2.9 22 209-230 2-23 (180)
462 TIGR02314 ABC_MetN D-methionin 93.3 0.23 4.9E-06 52.8 7.4 52 282-333 149-204 (343)
463 COG0488 Uup ATPase components 93.3 0.59 1.3E-05 52.5 10.9 55 276-332 156-212 (530)
464 PRK08533 flagellar accessory p 93.3 0.49 1.1E-05 47.3 9.4 54 207-265 23-76 (230)
465 KOG0927 Predicted transporter 93.3 0.98 2.1E-05 49.5 12.0 141 187-330 396-566 (614)
466 PRK00131 aroK shikimate kinase 93.2 0.063 1.4E-06 50.9 2.9 23 208-230 4-26 (175)
467 PRK11000 maltose/maltodextrin 93.2 0.45 9.8E-06 51.2 9.7 24 208-231 29-52 (369)
468 cd03248 ABCC_TAP TAP, the Tran 93.2 0.66 1.4E-05 46.2 10.3 24 208-231 40-63 (226)
469 PRK05342 clpX ATP-dependent pr 93.2 0.17 3.8E-06 54.9 6.4 44 187-230 73-130 (412)
470 PF08433 KTI12: Chromatin asso 93.2 0.14 3E-06 52.4 5.4 22 209-230 2-23 (270)
471 TIGR02142 modC_ABC molybdenum 93.2 0.54 1.2E-05 50.4 10.2 24 208-231 23-46 (354)
472 PRK10636 putative ABC transpor 93.2 0.78 1.7E-05 53.3 12.2 24 208-231 27-50 (638)
473 COG2019 AdkA Archaeal adenylat 93.2 0.079 1.7E-06 48.8 3.1 48 208-268 4-52 (189)
474 PRK13636 cbiO cobalt transport 93.1 0.49 1.1E-05 49.0 9.5 50 283-332 151-204 (283)
475 PRK05922 type III secretion sy 93.1 0.35 7.7E-06 52.5 8.6 100 208-311 157-267 (434)
476 COG0468 RecA RecA/RadA recombi 93.1 0.46 1E-05 48.5 9.0 91 206-302 58-152 (279)
477 PRK07721 fliI flagellum-specif 93.1 0.24 5.2E-06 54.2 7.4 93 207-302 157-259 (438)
478 PRK11819 putative ABC transpor 93.1 0.91 2E-05 51.9 12.5 24 208-231 33-56 (556)
479 PRK13536 nodulation factor exp 93.1 0.19 4E-06 53.5 6.4 24 208-231 67-90 (340)
480 cd01878 HflX HflX subfamily. 93.1 0.13 2.8E-06 50.3 4.9 26 207-232 40-65 (204)
481 PF03205 MobB: Molybdopterin g 93.1 0.072 1.6E-06 48.7 2.8 37 209-247 1-38 (140)
482 PF07728 AAA_5: AAA domain (dy 93.1 0.11 2.4E-06 47.2 4.1 88 211-315 2-90 (139)
483 TIGR01425 SRP54_euk signal rec 93.0 1 2.2E-05 49.0 12.0 24 207-230 99-122 (429)
484 PRK13947 shikimate kinase; Pro 93.0 0.063 1.4E-06 50.9 2.5 21 210-230 3-23 (171)
485 TIGR00554 panK_bact pantothena 93.0 0.077 1.7E-06 54.7 3.2 79 207-292 61-142 (290)
486 TIGR03574 selen_PSTK L-seryl-t 93.0 0.23 4.9E-06 50.4 6.7 21 210-230 1-21 (249)
487 cd03254 ABCC_Glucan_exporter_l 93.0 0.43 9.3E-06 47.6 8.6 50 283-332 149-200 (229)
488 PRK10762 D-ribose transporter 93.0 0.63 1.4E-05 52.5 10.9 24 208-231 30-53 (501)
489 PRK05688 fliI flagellum-specif 93.0 0.22 4.7E-06 54.3 6.8 91 208-302 168-269 (451)
490 TIGR01420 pilT_fam pilus retra 93.0 0.16 3.5E-06 54.1 5.8 111 208-332 122-232 (343)
491 PF01583 APS_kinase: Adenylyls 93.0 0.096 2.1E-06 48.5 3.5 35 208-244 2-36 (156)
492 TIGR01243 CDC48 AAA family ATP 93.0 0.3 6.4E-06 57.8 8.5 44 187-230 455-509 (733)
493 smart00534 MUTSac ATPase domai 93.0 0.41 8.8E-06 46.1 8.0 117 210-333 1-125 (185)
494 PF08477 Miro: Miro-like prote 93.0 0.082 1.8E-06 46.5 3.0 24 211-234 2-25 (119)
495 cd02020 CMPK Cytidine monophos 92.9 0.064 1.4E-06 49.2 2.3 21 210-230 1-21 (147)
496 PRK05439 pantothenate kinase; 92.9 0.11 2.5E-06 53.9 4.3 80 206-292 84-166 (311)
497 TIGR01041 ATP_syn_B_arch ATP s 92.9 0.25 5.4E-06 54.2 7.1 104 208-311 141-258 (458)
498 PRK11147 ABC transporter ATPas 92.9 1.1 2.3E-05 52.2 12.9 24 208-231 29-52 (635)
499 PRK10982 galactose/methyl gala 92.9 0.74 1.6E-05 51.8 11.2 24 208-231 24-47 (491)
500 PRK03846 adenylylsulfate kinas 92.9 0.089 1.9E-06 51.3 3.3 25 206-230 22-46 (198)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-77 Score=690.10 Aligned_cols=615 Identities=22% Similarity=0.308 Sum_probs=459.9
Q ss_pred HHHHHHHHhcccccchhhhcCHHHHHHHHHHHHhhhchHHHHHHHHHHhhhcC-C-----c--c-ee----ecccchhhh
Q 045386 74 EMAWLCLQLLDLEDTEEDVKRRDILEILDDINHFVHESDEAIDTFFINIMEQQ-N-----S--E-NE----SESSTNMAL 140 (706)
Q Consensus 74 e~~~~~~~l~~~~~~~~~~~~~~v~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~-~-----~--~-~~----~~~~~~~~~ 140 (706)
++..++.++.++++ ++.....+..|...+++++|++||.++.|.......+ . + . .. ..+...+..
T Consensus 36 ~L~~l~~~l~d~~a--~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~ 113 (889)
T KOG4658|consen 36 NLKALQSALEDLDA--KRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSD 113 (889)
T ss_pred HHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhh
Confidence 46677788877766 3446788999999999999999999999998876543 1 1 1 11 112222333
Q ss_pred HHHHHHHHHHHHHHHccccCCCCCCccccCCcccccccCCCCCccc-c-ccccccHHHHHHHHhcCCCCcEEEEEEcCCC
Q 045386 141 LFGLHSKIMDIRDRMQQLPPGDNGFDITEQSNKIIRLLSKGQHWLD-V-SEFERGREELFDLLIEGPSGLSVIAILDSNG 218 (706)
Q Consensus 141 r~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gG 218 (706)
.+.+++++-++.+.++.+..+. .+..... ...++..+.+.+... . ||.+..++++++.|.+++ ..++||+||||
T Consensus 114 ~~~~~~rv~~~l~~ve~l~~~~-~~~~~~~-~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~--~~iv~i~GMGG 189 (889)
T KOG4658|consen 114 SYKYGKRVSKVLREVESLGSKG-VFEVVGE-SLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDD--VGIVGIYGMGG 189 (889)
T ss_pred hHhHHHHHHHHHHHHHHhcccc-ceecccc-cccchhhcccCCCCccccccHHHHHHHHHHHhccCC--CCEEEEECCCc
Confidence 3444555555555554443221 1111100 011222234444444 3 999999999999999987 49999999999
Q ss_pred chhhHHHHHHHcCCC-ccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHHhcCCceEEE
Q 045386 219 FDKTVFAADIYNNNH-VKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILRDYLTNKKYFIV 296 (706)
Q Consensus 219 iGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~~kr~LlV 296 (706)
+||||||++++|+.. ++.+||.++||+||+.|+..+++++|++.++..... ... ..++++..|.+.|++|||+||
T Consensus 190 vGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~---~~~~~~~~~~~~i~~~L~~krfllv 266 (889)
T KOG4658|consen 190 VGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE---WEDKEEDELASKLLNLLEGKRFLLV 266 (889)
T ss_pred ccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcc---cchhhHHHHHHHHHHHhccCceEEE
Confidence 999999999999987 999999999999999999999999999999886541 233 567999999999999999999
Q ss_pred EccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCccee---------------------------eccc------------
Q 045386 297 RDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPILL---------------------------TFFE------------ 337 (706)
Q Consensus 297 lDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~---------------------------af~~------------ 337 (706)
|||||+ ..+|+.++.++|...+||||++|||++.|| +|..
T Consensus 267 LDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~la 345 (889)
T KOG4658|consen 267 LDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELA 345 (889)
T ss_pred Eecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHH
Confidence 999999 889999999999999999999999999999 3321
Q ss_pred ----cccCCCccceeeecccccccCC-HHHHHHHHHHhCcCcccCccchhhhhhccccc--ccccCCCcchHHHhhhhcc
Q 045386 338 ----LEHGGIIPLYSVPVGGPLIRLK-HEAWQFFILHYGSAPLVNYMDEKVVLTLLSRI--CSVLELPFHLKVCCLYLCV 410 (706)
Q Consensus 338 ----~~c~~glPLai~~~g~~L~~~~-~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~i--~sy~~L~~~lk~cfl~~s~ 410 (706)
..| +|+|||++++|+.|+.+. ..+|+++.+.+.+. +..+.. ...+.+..+ +||+.||+++|.||+|||+
T Consensus 346 k~v~~kC-~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~-~~~~~~--~~~~~i~~iLklSyd~L~~~lK~CFLycal 421 (889)
T KOG4658|consen 346 KEVAEKC-GGLPLALNVLGGLLACKKTVQEWRRALNVLKSS-LAADFS--GMEESILPILKLSYDNLPEELKSCFLYCAL 421 (889)
T ss_pred HHHHHHh-CChHHHHHHHHHHhcCCCcHHHHHHHHcccccc-ccCCCC--chhhhhHHhhhccHhhhhHHHHHHHHhhcc
Confidence 128 999999999999999999 88999999988776 443310 224556666 9999999999999999999
Q ss_pred CCCCcEEchHhHHHHHHhCCCCCCCc-----HHHHHHHHHHHHhcCceeeeecCCCCCeeEEEcChhHHHHHHHhhc---
Q 045386 411 FRPGIEMSTRQLCQLWIAEGFVPYNG-----EETAEHYLKELIHRGFIQVSKRRAGGTIKACYVPSFVYTSLGLMAD--- 482 (706)
Q Consensus 411 Fp~~~~i~~~~li~~W~a~g~i~~~~-----e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~--- 482 (706)
|||||+|+++.|+.+|+||||+.+.. +++|+.|+.+|++++|++..... ++..+|+|||+||++|.++|+
T Consensus 422 FPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 422 FPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred CCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhcccc
Confidence 99999999999999999999998843 89999999999999999987644 566899999999999999999
Q ss_pred --ccCeEecCC-C-----CCCCCCceeEEEEecc-------CCCCceE--EeeCCC---------ccccCcccccEEEec
Q 045386 483 --KTKFLWMPD-R-----EAEPFANVKRYIILEH-------LTEGDHL--AVIDCE---------NFCKKFKHLRVLNFG 536 (706)
Q Consensus 483 --~e~~~~~~~-~-----~~~~~~~~r~ls~~~~-------~~~~~~l--l~f~~~---------~~~~~l~~L~~L~L~ 536 (706)
++++++..+ . ....+..+|+++++.+ ...++++ +++..+ .+|..++.|++|||+
T Consensus 500 ~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs 579 (889)
T KOG4658|consen 500 KQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS 579 (889)
T ss_pred ccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECC
Confidence 777555532 1 1224568899999987 4456666 444332 558999999999999
Q ss_pred CCC-CCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCC-CCCccchhhccccccceeee--cCcc-CCc
Q 045386 537 SAV-LDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSS-YIDQSPEDIWMMQKLMHLNF--GSIT-LPA 611 (706)
Q Consensus 537 ~~~-l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~-~~~~lP~~l~~L~~L~~L~l--~~~~-lp~ 611 (706)
+|. +.++|..+++|.|||||+|+++.+..+|..+.+|..|++||+..+ .+..+|..+..|++||+|.+ +... -..
T Consensus 580 ~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~ 659 (889)
T KOG4658|consen 580 GNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL 659 (889)
T ss_pred CCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchh
Confidence 887 889999999999999999999999999999999999999999998 55566666777999999999 2211 111
Q ss_pred chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEcc-CCcCccchHHhcCCCCCCcEEEEeeCCCC--------
Q 045386 612 PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGD-LSYYQSGVSKSLCELHKLECLKLVNESKP-------- 682 (706)
Q Consensus 612 ~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-------- 682 (706)
.++ .+.+|++|....+...+......+..+++|+.+...-. ........+.++..+.+|+.|.+..+...
T Consensus 660 ~l~-el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~ 738 (889)
T KOG4658|consen 660 LLK-ELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE 738 (889)
T ss_pred hHH-hhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccccc
Confidence 233 44455555444433321112234444444443222111 01234455566667777777777665431
Q ss_pred --------------------CccccCCcccccccceEEecccC
Q 045386 683 --------------------SWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 683 --------------------~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
.+..+....+||+|+.|++..|+
T Consensus 739 ~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 739 SLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred ccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 01111134678999999999886
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.4e-48 Score=467.01 Aligned_cols=445 Identities=19% Similarity=0.227 Sum_probs=276.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEe---cCC-----------CC-
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRV---SIG-----------YY- 251 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~- 251 (706)
+||++..++++..+|..+..++++|+||||||+||||||+++|+ ++..+|+..+|+.. +.. ++
T Consensus 186 ~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~ 263 (1153)
T PLN03210 186 FVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNM 263 (1153)
T ss_pred ccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccch
Confidence 99999999999999876666799999999999999999999999 88899998887742 111 11
Q ss_pred HHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHHhcCCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 252 FGKILDDIINSLMPPSRARVIIGE-DYHLKKSILRDYLTNKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 252 ~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
...++++++.++..... ... . ...+++.|++||+||||||||+ ...|+.+.....+.++||+||||||++
T Consensus 264 ~~~l~~~~l~~il~~~~----~~~~~----~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 264 KLHLQRAFLSEILDKKD----IKIYH----LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred hHHHHHHHHHHHhCCCC----cccCC----HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 12345555655543321 111 2 2457788999999999999999 999999998777778999999999998
Q ss_pred cee--------------------------ecccc---------------ccCCCccceeeecccccccCCHHHHHHHHHH
Q 045386 331 ILL--------------------------TFFEL---------------EHGGIIPLYSVPVGGPLIRLKHEAWQFFILH 369 (706)
Q Consensus 331 ~v~--------------------------af~~~---------------~c~~glPLai~~~g~~L~~~~~~~w~~~~~~ 369 (706)
.++ ||+.. .| +|+|||++++|++|+++...+|+.++++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c-~GLPLAl~vlgs~L~~k~~~~W~~~l~~ 413 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRA-GNLPLGLNVLGSYLRGRDKEDWMDMLPR 413 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh-CCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 776 55411 17 9999999999999999889999999999
Q ss_pred hCcCcccCccchhhhhhccccc-ccccCCCc-chHHHhhhhccCCCCcEEchHhHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 045386 370 YGSAPLVNYMDEKVVLTLLSRI-CSVLELPF-HLKVCCLYLCVFRPGIEMSTRQLCQLWIAEGFVPYNGEETAEHYLKEL 447 (706)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~~~i-~sy~~L~~-~lk~cfl~~s~Fp~~~~i~~~~li~~W~a~g~i~~~~e~~~~~~~~~L 447 (706)
+... . ..+....+ +||+.|++ ..|.||+++|.|+.+..++ .+..|++.+... ++..++.|
T Consensus 414 L~~~-~--------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L 475 (1153)
T PLN03210 414 LRNG-L--------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNL 475 (1153)
T ss_pred HHhC-c--------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHH
Confidence 8765 2 12233345 99999987 5999999999999986543 467788876543 23348899
Q ss_pred HhcCceeeeecCCCCCeeEEEcChhHHHHHHHhhcccC-------eEec-CC-----CCCCCCCceeEEEEeccCCCCce
Q 045386 448 IHRGFIQVSKRRAGGTIKACYVPSFVYTSLGLMADKTK-------FLWM-PD-----REAEPFANVKRYIILEHLTEGDH 514 (706)
Q Consensus 448 ~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e~-------~~~~-~~-----~~~~~~~~~r~ls~~~~~~~~~~ 514 (706)
+++||++... .+++|||++|++++.+++++. +... .+ .......+++.+++.....+.
T Consensus 476 ~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~-- 546 (1153)
T PLN03210 476 VDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE-- 546 (1153)
T ss_pred HhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce--
Confidence 9999998753 369999999999999987653 2211 00 001123456666655431100
Q ss_pred EEeeCCCccccCcccccEEEecCCCC------C-cCCccccccc-cCcEEEcccCCccccChhhcCCCCCcEEEccCCCC
Q 045386 515 LAVIDCENFCKKFKHLRVLNFGSAVL------D-QFPPGLENLF-LLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYI 586 (706)
Q Consensus 515 ll~f~~~~~~~~l~~L~~L~L~~~~l------~-~lp~~~~~L~-~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~ 586 (706)
+ .+ ....|.+|++|+.|.+..+.. . .+|..+..++ +||+|++.++.++.+|..+ .+.+|+.|++++|.+
T Consensus 547 ~-~i-~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 547 L-HI-HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKL 623 (1153)
T ss_pred e-ee-cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccc
Confidence 0 00 003344444444444433211 1 2333333332 3444444444444444433 234444444444444
Q ss_pred Cccchhhccccccceeeec----CccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchH
Q 045386 587 DQSPEDIWMMQKLMHLNFG----SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVS 662 (706)
Q Consensus 587 ~~lP~~l~~L~~L~~L~l~----~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 662 (706)
..+|.++..+++|+.|++. ...+| .+. .+++|++|.+.+|..... .|..++++++|+.|++++|. ....+|
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls-~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~--~L~~Lp 698 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLS-MATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCE--NLEILP 698 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCC-ccc-cCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCC--CcCccC
Confidence 4444444444444444441 11222 233 444444444444333322 34444444444444444433 333333
Q ss_pred HhcCCCCCCcEEEEeeC
Q 045386 663 KSLCELHKLECLKLVNE 679 (706)
Q Consensus 663 ~~l~~l~~L~~L~L~~~ 679 (706)
..+ .+++|+.|++++|
T Consensus 699 ~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CcC-CCCCCCEEeCCCC
Confidence 332 3444444444443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.7e-39 Score=334.79 Aligned_cols=238 Identities=26% Similarity=0.428 Sum_probs=189.9
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCC
Q 045386 190 FERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRA 269 (706)
Q Consensus 190 r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~ 269 (706)
||.++++|.+.|.....+.++|+|+||||+||||||+.++++..++.+|+.++|+.++...+..+++..|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999998667799999999999999999999999766999999999999999999999999999999988542
Q ss_pred ccccCC-CHHHHHHHHHHHhcCCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCccee---------------
Q 045386 270 RVIIGE-DYHLKKSILRDYLTNKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPILL--------------- 333 (706)
Q Consensus 270 ~~~~~~-~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~--------------- 333 (706)
. ... +.+++...+++.|+++++||||||||+ ...|+.+...++....||+||||||+..++
T Consensus 81 ~--~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 I--SDPKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp S--SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred c--ccccccccccccchhhhccccceeeeeeecc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 123 788899999999999999999999999 889999999998888899999999999876
Q ss_pred ------------ecc-c---------------cccCCCccceeeecccccccCC-HHHHHHHHHHhCcCcccCccchhhh
Q 045386 334 ------------TFF-E---------------LEHGGIIPLYSVPVGGPLIRLK-HEAWQFFILHYGSAPLVNYMDEKVV 384 (706)
Q Consensus 334 ------------af~-~---------------~~c~~glPLai~~~g~~L~~~~-~~~w~~~~~~~~~~~l~~~~~~~~~ 384 (706)
++. . ..| +|+|||++++|++|+.+. ..+|+.+++.+... ..... ..
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~-~~~~~---~~ 232 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKC-GGLPLALKLIASYLRSKSTVDEWEEALEELENS-LRESR---DY 232 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHT-TT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHC-HTCSS---GS
T ss_pred ccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccc---cc
Confidence 221 1 118 999999999999997665 78899998887665 32110 11
Q ss_pred hhcccc-c-ccccCCCcchHHHhhhhccCCCCcEEchHhHHHHHHhCCCCCCC
Q 045386 385 LTLLSR-I-CSVLELPFHLKVCCLYLCVFRPGIEMSTRQLCQLWIAEGFVPYN 435 (706)
Q Consensus 385 ~~~~~~-i-~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~li~~W~a~g~i~~~ 435 (706)
...+.. + +||+.||+++|+||+|||+||+++.|+++.|+++|+++|||...
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 234444 4 99999999999999999999999999999999999999999764
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=4.6e-17 Score=146.23 Aligned_cols=167 Identities=21% Similarity=0.311 Sum_probs=142.4
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
+..+.+...|.||.|.++.+|+.+..|.+|..|++++|+|+++|.+++.|+.|+.|++.-|.+..+|.+||.++.|..|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e--c---CccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 604 F--G---SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 604 l--~---~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
+ + -..+|..|. .|+-|+.|++.++... ..|.++++|++|+.|.+..| ..-.+|..++.+.+|+.|++.+
T Consensus 109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ccccccccccCCcchh-HHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhccc
Confidence 9 2 237898888 8888888888776653 27899999999999999887 5667899999999999999999
Q ss_pred CCCCCccccCCcccccccceEEeccc
Q 045386 679 ESKPSWMVLSEYQFPPSLIQLSLSIV 704 (706)
Q Consensus 679 ~~~~~l~~l~~~~~p~~L~~L~L~~n 704 (706)
| .+..+ ||-|-.|++-++
T Consensus 183 n---rl~vl-----ppel~~l~l~~~ 200 (264)
T KOG0617|consen 183 N---RLTVL-----PPELANLDLVGN 200 (264)
T ss_pred c---eeeec-----Chhhhhhhhhhh
Confidence 4 44544 466666666554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=2e-16 Score=167.07 Aligned_cols=177 Identities=22% Similarity=0.241 Sum_probs=144.6
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhh-cCCCCCcEEEccCCCCCccchhhccccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLL-CTLLNLETLEMPSSYIDQSPEDIWMMQKLM 600 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i-~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~ 600 (706)
+-+..+..|.+||||.|++.+.|..+....++-.|+||+|+|..||.++ -+|..|-+||||+|.+..+|+-+..|..|+
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 5567889999999999999999999999999999999999999999986 589999999999999999999999999999
Q ss_pred eeeecCccCC----cchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEE
Q 045386 601 HLNFGSITLP----APPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKL 676 (706)
Q Consensus 601 ~L~l~~~~lp----~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L 676 (706)
.|.+++..+- ..+. .|++|++|.+++.+....+.|..+..|.||+.++++.| ....+|+.+-++.+|+.|+|
T Consensus 177 tL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred hhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheecc
Confidence 9999443211 1122 67788888888777655568999999999999999988 68889999999999999999
Q ss_pred eeCCCCCccccCC-cccccccceEEecccC
Q 045386 677 VNESKPSWMVLSE-YQFPPSLIQLSLSIVR 705 (706)
Q Consensus 677 ~~~~~~~l~~l~~-~~~p~~L~~L~L~~n~ 705 (706)
++|.. +.|.. ...-.+|++|+||+|.
T Consensus 253 S~N~i---teL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 253 SGNKI---TELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred CcCce---eeeeccHHHHhhhhhhccccch
Confidence 99654 32221 0112467777776663
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.48 E-value=1.1e-13 Score=168.63 Aligned_cols=152 Identities=23% Similarity=0.358 Sum_probs=78.4
Q ss_pred ccCcccccEEEecCCCCC-cCCccccccccCcEEEcccCCcc-ccChhhcCCCCCcEEEccCCCCC-ccchhhccccccc
Q 045386 524 CKKFKHLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-RLPSLLCTLLNLETLEMPSSYID-QSPEDIWMMQKLM 600 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~~l~-~lP~~i~~L~~L~~L~L~~~~~~-~lP~~l~~L~~L~ 600 (706)
+.++++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 455555666666655544 45555555556666666555544 45555555555555555555433 4555555555555
Q ss_pred eeeecC--c--cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEE
Q 045386 601 HLNFGS--I--TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKL 676 (706)
Q Consensus 601 ~L~l~~--~--~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L 676 (706)
+|++.. . .+|..++ .+++|++|.+..+..... .+..++++++|+.|++++|. ..+.+|..+..+++|+.|++
T Consensus 240 ~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNS--LSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred EEECcCceeccccChhHh-CCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCCe--eccCCChhHcCCCCCcEEEC
Confidence 555511 1 3454555 555555555544433222 44445555555555555443 33344444444555555555
Q ss_pred eeC
Q 045386 677 VNE 679 (706)
Q Consensus 677 ~~~ 679 (706)
++|
T Consensus 316 ~~n 318 (968)
T PLN00113 316 FSN 318 (968)
T ss_pred CCC
Confidence 443
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=1e-15 Score=137.68 Aligned_cols=153 Identities=23% Similarity=0.233 Sum_probs=132.2
Q ss_pred cccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeee---cCccCCcchhcCCccCcc
Q 045386 546 GLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNF---GSITLPAPPKNYSSSLKN 622 (706)
Q Consensus 546 ~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l---~~~~lp~~i~~~l~~L~~ 622 (706)
.+.++.+.+.|-||+|+++.+|+.|..|.+|++|++++|+++++|.+++.|++|++|++ ....+|.+|| .++.|+.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg-s~p~lev 106 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG-SFPALEV 106 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC-CCchhhh
Confidence 45678889999999999999999999999999999999999999999999999999999 3457999999 9999999
Q ss_pred cccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccC-CcccccccceEEe
Q 045386 623 LIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLS-EYQFPPSLIQLSL 701 (706)
Q Consensus 623 L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~-~~~~p~~L~~L~L 701 (706)
|++..++.+....|..|-.++-|+.|.++.| .++.+|..++++.+|+.|.+..|+ +-.++ ...-...|++|.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil~lrdnd---ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDN---DFEILPPDVGKLTNLQILSLRDND---LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCC---CcccCChhhhhhcceeEEeeccCc---hhhCcHHHHHHHHHHHHhc
Confidence 9998888776668888888999999999988 688999999999999999999854 33332 0111257999999
Q ss_pred cccC
Q 045386 702 SIVR 705 (706)
Q Consensus 702 ~~n~ 705 (706)
.|||
T Consensus 181 qgnr 184 (264)
T KOG0617|consen 181 QGNR 184 (264)
T ss_pred ccce
Confidence 9987
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.46 E-value=1.4e-13 Score=167.74 Aligned_cols=152 Identities=24% Similarity=0.349 Sum_probs=126.2
Q ss_pred cCcccccEEEecCCCCC-cCCccccccccCcEEEcccCCcc-ccChhhcCCCCCcEEEccCCCC-Cccchhhccccccce
Q 045386 525 KKFKHLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-RLPSLLCTLLNLETLEMPSSYI-DQSPEDIWMMQKLMH 601 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~~l~-~lP~~i~~L~~L~~L~L~~~~~-~~lP~~l~~L~~L~~ 601 (706)
..+++|++|+|++|.++ .+|..++++++|++|+|++|.+. .+|..++++++|++|+|++|.+ ..+|..++++++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 45778888888888876 67888999999999999998875 7888899999999999999865 467888999999999
Q ss_pred eeec--Cc--cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEe
Q 045386 602 LNFG--SI--TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLV 677 (706)
Q Consensus 602 L~l~--~~--~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 677 (706)
|++. .. .+|..++ .+++|++|++..+..... .+..++++++|+.|+++.|. ..+.+|..+..+++|+.|+++
T Consensus 217 L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNK--LSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred EECcCCccCCcCChhHh-cCCCCCEEECcCceeccc-cChhHhCCCCCCEEECcCCe--eeccCchhHhhccCcCEEECc
Confidence 9982 22 5788888 999999999877765444 77889999999999998886 666788889999999999998
Q ss_pred eCC
Q 045386 678 NES 680 (706)
Q Consensus 678 ~~~ 680 (706)
+|.
T Consensus 293 ~n~ 295 (968)
T PLN00113 293 DNS 295 (968)
T ss_pred CCe
Confidence 864
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.35 E-value=6.3e-14 Score=148.51 Aligned_cols=153 Identities=19% Similarity=0.201 Sum_probs=137.0
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
+.+..+.+|+.+|||.|+++.+|+.+-++++|+.|+||+|.|+++.-.++...+|++|++|.|+++.+|..+++|++|+.
T Consensus 216 tsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTK 295 (1255)
T ss_pred CchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHH
Confidence 66788999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred eeecC-----ccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEE
Q 045386 602 LNFGS-----ITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKL 676 (706)
Q Consensus 602 L~l~~-----~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L 676 (706)
|+++. ..+|.+|| +|.+|+.+...++. ... .|+.+..+..|+.|.+..| ..-.+|+.+--++.|+.|++
T Consensus 296 Ly~n~NkL~FeGiPSGIG-KL~~Levf~aanN~-LEl-VPEglcRC~kL~kL~L~~N---rLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIG-KLIQLEVFHAANNK-LEL-VPEGLCRCVKLQKLKLDHN---RLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHhccCcccccCCccchh-hhhhhHHHHhhccc-ccc-CchhhhhhHHHHHhccccc---ceeechhhhhhcCCcceeec
Confidence 99932 26899999 99999988755443 343 8999999999999999988 57788999999999999999
Q ss_pred eeCC
Q 045386 677 VNES 680 (706)
Q Consensus 677 ~~~~ 680 (706)
..|.
T Consensus 370 reNp 373 (1255)
T KOG0444|consen 370 RENP 373 (1255)
T ss_pred cCCc
Confidence 9864
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.27 E-value=1.4e-12 Score=137.76 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=66.8
Q ss_pred ccccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQK 598 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~ 598 (706)
..++.++.||+||||.|.|+.+| +++..=.++++|+|++|.|+.+-. .+.+|.+|.+|.|+.|.++.+|. .|.+|++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 34555667777777777777665 335555677777777777776643 35667777777777777777776 4555777
Q ss_pred cceeee--cCccCCcc--hhcCCccCccccccccc
Q 045386 599 LMHLNF--GSITLPAP--PKNYSSSLKNLIFISAL 629 (706)
Q Consensus 599 L~~L~l--~~~~lp~~--i~~~l~~L~~L~~~~~~ 629 (706)
|+.|++ +.+++-++ |. .|.+|+.|.+-.++
T Consensus 223 L~~LdLnrN~irive~ltFq-gL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQ-GLPSLQNLKLQRND 256 (873)
T ss_pred hhhhhccccceeeehhhhhc-CchhhhhhhhhhcC
Confidence 777777 22233322 44 55555555554443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.26 E-value=2.8e-11 Score=148.46 Aligned_cols=173 Identities=27% Similarity=0.251 Sum_probs=95.6
Q ss_pred CcccccEEEecCCCCCcCCccccccccCcEEEcccC-CccccChhhcCCCCCcEEEccCC-CCCccchhhccccccceee
Q 045386 526 KFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIP-SLKRLPSLLCTLLNLETLEMPSS-YIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~-~l~~lP~~i~~L~~L~~L~L~~~-~~~~lP~~l~~L~~L~~L~ 603 (706)
.+.+|+.|+|++|.+..+|..+..+++|++|+|+++ .++.+| .++.+++|++|+|++| .+..+|..++++++|++|+
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 345666677766666666666666667777777664 355555 3666666666666666 5566666666666666666
Q ss_pred ecC----ccCCcchhcCCccCcccccccccccCC-------------------CCchhc---------------------
Q 045386 604 FGS----ITLPAPPKNYSSSLKNLIFISALNPSS-------------------CTPDIL--------------------- 639 (706)
Q Consensus 604 l~~----~~lp~~i~~~l~~L~~L~~~~~~~~~~-------------------~~~~~l--------------------- 639 (706)
++. ..+|.++ ++++|++|.+.+|..... ..|..+
T Consensus 688 L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 688 MSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 621 2445433 344555554443321110 011100
Q ss_pred ---------CCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCCcccccccceEEecccC
Q 045386 640 ---------DRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 640 ---------~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
...++|+.|++++|. ....+|.+++.+++|+.|+|++|.. +..++....+++|++|+|++|.
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~--~l~~lP~si~~L~~L~~L~Ls~C~~--L~~LP~~~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIP--SLVELPSSIQNLHKLEHLEIENCIN--LETLPTGINLESLESLDLSGCS 836 (1153)
T ss_pred ccccchhhhhccccchheeCCCCC--CccccChhhhCCCCCCEEECCCCCC--cCeeCCCCCccccCEEECCCCC
Confidence 011345555555554 4556778888888888888887642 2222222223455555555553
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.16 E-value=6.8e-13 Score=134.45 Aligned_cols=173 Identities=24% Similarity=0.219 Sum_probs=109.1
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
+.++.+..|..|+..+|+++++|+.++++..|..|++.+|.++.+|+..-+++.|+.||...|-++.+|+.++.|.+|..
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL 210 (565)
T ss_pred chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence 44555556666666666666666666666666666666666666666655566666666666666666666666666666
Q ss_pred eee--cCc-cCCcchhcCCccCcccccccccccCCCCchhc-CCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEe
Q 045386 602 LNF--GSI-TLPAPPKNYSSSLKNLIFISALNPSSCTPDIL-DRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLV 677 (706)
Q Consensus 602 L~l--~~~-~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l-~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 677 (706)
||+ +.. .+| +|+ .++.|..|....+.... .|.+. .+|++|..|++..| ....+|..++.+.+|.+|+++
T Consensus 211 LyL~~Nki~~lP-ef~-gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~vLDLRdN---klke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 211 LYLRRNKIRFLP-EFP-GCSLLKELHVGENQIEM--LPAEHLKHLNSLLVLDLRDN---KLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred HHhhhcccccCC-CCC-ccHHHHHHHhcccHHHh--hHHHHhcccccceeeecccc---ccccCchHHHHhhhhhhhccc
Confidence 666 222 344 666 66666666644433321 34443 47788888888877 677888888888889999998
Q ss_pred eCCCCCccccCCcccccccceEEeccc
Q 045386 678 NESKPSWMVLSEYQFPPSLIQLSLSIV 704 (706)
Q Consensus 678 ~~~~~~l~~l~~~~~p~~L~~L~L~~n 704 (706)
+|+ +..++...=.-.|+.|-+.||
T Consensus 284 NN~---is~Lp~sLgnlhL~~L~leGN 307 (565)
T KOG0472|consen 284 NND---ISSLPYSLGNLHLKFLALEGN 307 (565)
T ss_pred CCc---cccCCcccccceeeehhhcCC
Confidence 844 444431111115677777776
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.16 E-value=5.6e-12 Score=133.35 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=105.7
Q ss_pred ccccCcccccEEEecCCCCCcCCcc-ccccccCcEEEcccCCcccc-ChhhcCCCCCcEEEccCCCCCccch-hhccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPG-LENLFLLKYLKLNIPSLKRL-PSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQK 598 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~Lr~L~Ls~~~l~~l-P~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~ 598 (706)
..|.++.+|-+|.|+.|.++.+|.. |.+|++|+.|+|..|.|..+ -..+..|++|+.|.|..|.+..+-+ .|..|.+
T Consensus 191 ~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 191 GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc
Confidence 5677777888888888888888755 55588888888888877644 2246677777777777777777766 4667788
Q ss_pred cceeee--cC-ccCCc-chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEE
Q 045386 599 LMHLNF--GS-ITLPA-PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECL 674 (706)
Q Consensus 599 L~~L~l--~~-~~lp~-~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 674 (706)
+++|++ +. ..+.. ++. +|+.|+.|+++.+..... .+......++|..|+++.|. ...--+.++..++.|+.|
T Consensus 271 me~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~--i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNR--ITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred cceeecccchhhhhhccccc-ccchhhhhccchhhhhee-ecchhhhcccceeEeccccc--cccCChhHHHHHHHhhhh
Confidence 888887 22 23333 356 778888888777665444 56666667777777777775 333344566666666666
Q ss_pred EEeeC
Q 045386 675 KLVNE 679 (706)
Q Consensus 675 ~L~~~ 679 (706)
+|+.|
T Consensus 347 nLs~N 351 (873)
T KOG4194|consen 347 NLSHN 351 (873)
T ss_pred ccccc
Confidence 66664
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.11 E-value=2.1e-12 Score=130.93 Aligned_cols=174 Identities=21% Similarity=0.211 Sum_probs=135.7
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
.....+..|+.|+.++|.+.++|++++.+..|..|+..+|++..+|..++++..|..|++.+|.+..+|+....++.|+|
T Consensus 108 ~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKH 187 (565)
T ss_pred HHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHh
Confidence 44566778888899999988899999999999999999999999999999898999999999999999888777899999
Q ss_pred eeecC---ccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcC-CCCCCcEEEEe
Q 045386 602 LNFGS---ITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLC-ELHKLECLKLV 677 (706)
Q Consensus 602 L~l~~---~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~L~ 677 (706)
|+++. ..+|+.++ .|.+|..|++..+... +.++|+.+..|.+|++..| ..+.+|+... .+++|..|+++
T Consensus 188 ld~~~N~L~tlP~~lg-~l~~L~~LyL~~Nki~---~lPef~gcs~L~Elh~g~N---~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELG-GLESLELLYLRRNKIR---FLPEFPGCSLLKELHVGEN---QIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred cccchhhhhcCChhhc-chhhhHHHHhhhcccc---cCCCCCccHHHHHHHhccc---HHHhhHHHHhcccccceeeecc
Confidence 99822 37888898 8888888876655442 4458888888888888877 5677777666 78889999998
Q ss_pred eCCCCCccccC-CcccccccceEEecccC
Q 045386 678 NESKPSWMVLS-EYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 678 ~~~~~~l~~l~-~~~~p~~L~~L~L~~n~ 705 (706)
.|.. ...+ ......+|+.||+++|.
T Consensus 261 dNkl---ke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 261 DNKL---KEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred cccc---ccCchHHHHhhhhhhhcccCCc
Confidence 8543 2222 11123678888888773
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.00 E-value=8.1e-10 Score=127.31 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=33.7
Q ss_pred cccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeee
Q 045386 529 HLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNF 604 (706)
Q Consensus 529 ~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l 604 (706)
+|+.|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|++|++++|.+..+|..+. ++|++|++
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSV 290 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEEC
Confidence 45555555555555544332 245555555555555554443 245555555555555554332 24555554
No 16
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=6.4e-11 Score=125.39 Aligned_cols=149 Identities=27% Similarity=0.366 Sum_probs=117.4
Q ss_pred cCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeee
Q 045386 525 KKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNF 604 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l 604 (706)
..|..|..|.|..|.+-.+|..+++|..|+||+|+.|.+..+|..+|.|+ |+.|-+++|+++.+|..++.++.|.+|+.
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhh
Confidence 44556777778888888888888888888888888888888888888885 88888888888888888888888888888
Q ss_pred ---cCccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCC
Q 045386 605 ---GSITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESK 681 (706)
Q Consensus 605 ---~~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 681 (706)
+...+|..++ .+.+|+.|....+... ..|.++..|+ |.+|++++| ....+|..|.+|.+|++|-|.+|..
T Consensus 174 s~nei~slpsql~-~l~slr~l~vrRn~l~--~lp~El~~Lp-Li~lDfScN---kis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 174 SKNEIQSLPSQLG-YLTSLRDLNVRRNHLE--DLPEELCSLP-LIRLDFSCN---KISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhhchHHhh-hHHHHHHHHHhhhhhh--hCCHHHhCCc-eeeeecccC---ceeecchhhhhhhhheeeeeccCCC
Confidence 2237888888 8888888876655543 2677787664 778888887 5777888888888888888888543
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-10 Score=129.86 Aligned_cols=69 Identities=23% Similarity=0.324 Sum_probs=35.5
Q ss_pred cccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE 591 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~ 591 (706)
+...+.+|..|+..+|.++.+|..+..+..|++|.+..|.+..+|+...++.+|++|+|..|++..+|+
T Consensus 259 wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 259 WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccch
Confidence 334444455555555555444544444555555555555555555555555555555555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.91 E-value=2e-09 Score=124.10 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=110.2
Q ss_pred ccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeec--
Q 045386 528 KHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFG-- 605 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~-- 605 (706)
+.|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 468999999999999998765 589999999999999998664 479999999999999998765 589999992
Q ss_pred -CccCCcchhcCCccCcccccccccccCCCCchhcC-------------------CCCCCCeEEEEccCCcCccchHHhc
Q 045386 606 -SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILD-------------------RLPSVRTLRISGDLSYYQSGVSKSL 665 (706)
Q Consensus 606 -~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~-------------------~L~~L~~L~l~~~~~~~~~~~~~~l 665 (706)
...+|..+. .+|++|++..+.... .|..+. -.++|+.|.+++|. ...+|..+
T Consensus 273 ~L~~LP~~l~---~sL~~L~Ls~N~Lt~--LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~---Lt~LP~~l 344 (754)
T PRK15370 273 KISCLPENLP---EELRYLSVYDNSIRT--LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA---LTSLPASL 344 (754)
T ss_pred ccCccccccC---CCCcEEECCCCcccc--CcccchhhHHHHHhcCCccccCCccccccceeccccCCc---cccCChhh
Confidence 235666554 367777766654321 121111 11355666665553 33355444
Q ss_pred CCCCCCcEEEEeeCCCCCccccCCcccccccceEEecccC
Q 045386 666 CELHKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 666 ~~l~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
. ++|+.|++++|. +..++ ..+|++|+.|+|++|+
T Consensus 345 ~--~sL~~L~Ls~N~---L~~LP-~~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 345 P--PELQVLDVSKNQ---ITVLP-ETLPPTITTLDVSRNA 378 (754)
T ss_pred c--CcccEEECCCCC---CCcCC-hhhcCCcCEEECCCCc
Confidence 3 578888888743 33333 2346789999998885
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=2.1e-08 Score=121.64 Aligned_cols=253 Identities=13% Similarity=0.071 Sum_probs=150.6
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecC-CCCHHHHHHHHHHhcCCCCCCc-c-
Q 045386 195 EELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSI-GYYFGKILDDIINSLMPPSRAR-V- 271 (706)
Q Consensus 195 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~il~~l~~~~~~~-~- 271 (706)
.+|.+.|... ...+++.|.|++|.||||++.+.... ++.++|+++.. +-+...+...++..+....... +
T Consensus 20 ~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~ 92 (903)
T PRK04841 20 ERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSK 92 (903)
T ss_pred hHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccch
Confidence 3455555432 35789999999999999999998752 23699999964 4466677777777774221110 0
Q ss_pred ------ccCC-CHHHHHHHHHHHhc--CCceEEEEccCCC-ChhhHH-HHHhhcCCCCCCcEEEEeeCCccee-------
Q 045386 272 ------IIGE-DYHLKKSILRDYLT--NKKYFIVRDDVFN-DSDIWD-DLEEVLPDKQNGSRVLILVTDPILL------- 333 (706)
Q Consensus 272 ------~~~~-~~~~~~~~l~~~L~--~kr~LlVlDdvw~-~~~~~~-~l~~~l~~~~~gs~IivTTR~~~v~------- 333 (706)
.... +...+...+-..+. +.+++|||||+.. +..... .+...+.....+.++|||||...-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~ 172 (903)
T PRK04841 93 SEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRV 172 (903)
T ss_pred hhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHh
Confidence 0111 23333433333333 5789999999977 323333 4444444445567898999984211
Q ss_pred ------------eccc------------------------cccCCCccceeeecccccccCCHHHHHHHHHHhCcCcccC
Q 045386 334 ------------TFFE------------------------LEHGGIIPLYSVPVGGPLIRLKHEAWQFFILHYGSAPLVN 377 (706)
Q Consensus 334 ------------af~~------------------------~~c~~glPLai~~~g~~L~~~~~~~w~~~~~~~~~~~l~~ 377 (706)
.|.. ..| +|.|+++..++..++..... -......+...
T Consensus 173 ~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t-~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~---- 246 (903)
T PRK04841 173 RDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDV-EGWATALQLIALSARQNNSS-LHDSARRLAGI---- 246 (903)
T ss_pred cCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHh-CChHHHHHHHHHHHhhCCCc-hhhhhHhhcCC----
Confidence 1210 015 99999998877665443210 00011111000
Q ss_pred ccchhhhhhcccc-c--ccccCCCcchHHHhhhhccCCCCcEEchHhHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCcee
Q 045386 378 YMDEKVVLTLLSR-I--CSVLELPFHLKVCCLYLCVFRPGIEMSTRQLCQLWIAEGFVPYNGEETAEHYLKELIHRGFIQ 454 (706)
Q Consensus 378 ~~~~~~~~~~~~~-i--~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~li~~W~a~g~i~~~~e~~~~~~~~~L~~~~ll~ 454 (706)
....+.. + --++.||++.+..++..|+++ .++.+ +...- .. .+.+...+.+|.+.+++.
T Consensus 247 ------~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~l-----~~---~~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 247 ------NASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVRV-----TG---EENGQMRLEELERQGLFI 308 (903)
T ss_pred ------CchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHHH-----cC---CCcHHHHHHHHHHCCCee
Confidence 0011222 1 347899999999999999997 34433 22211 11 234578899999999976
Q ss_pred eeecCCCCCeeEEEcChhHHHHHHHhh
Q 045386 455 VSKRRAGGTIKACYVPSFVYTSLGLMA 481 (706)
Q Consensus 455 ~~~~~~~~~~~~~~mHdlv~~~~~~~~ 481 (706)
..... ...+|+.|++++++++...
T Consensus 309 ~~~~~---~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 309 QRMDD---SGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred EeecC---CCCEEehhHHHHHHHHHHH
Confidence 43211 1146889999999998765
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.78 E-value=3.1e-09 Score=124.42 Aligned_cols=175 Identities=22% Similarity=0.213 Sum_probs=121.8
Q ss_pred cCcccccEEEecCCC--CCcCCcc-ccccccCcEEEcccC-CccccChhhcCCCCCcEEEccCCCCCccchhhccccccc
Q 045386 525 KKFKHLRVLNFGSAV--LDQFPPG-LENLFLLKYLKLNIP-SLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLM 600 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~--l~~lp~~-~~~L~~Lr~L~Ls~~-~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~ 600 (706)
...+.|++|-+.+|. +..++.. |..+++|++|||++| .+..+|++|++|-+|++|+++++.+..+|.++++|.+|.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 445579999999996 6666654 778999999999987 688999999999999999999999999999999999999
Q ss_pred eeeecC---ccCCcchhcCCccCccccccccc-ccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCc----
Q 045386 601 HLNFGS---ITLPAPPKNYSSSLKNLIFISAL-NPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLE---- 672 (706)
Q Consensus 601 ~L~l~~---~~lp~~i~~~l~~L~~L~~~~~~-~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~---- 672 (706)
||++.. ...++++...|++|++|.+.... ..+.....++.+|.+|+.|.+.... . .+...+..+.+|.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s---~-~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS---V-LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch---h-HhHhhhhhhHHHHHHhH
Confidence 999922 22334444169999999987654 3333466677777888877775443 1 2223334444444
Q ss_pred EEEEeeCCCCCccccCCcccccccceEEecccC
Q 045386 673 CLKLVNESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 673 ~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
.+.+.++.. -...+......+|+.|.+.+|.
T Consensus 698 ~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 698 SLSIEGCSK--RTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred hhhhccccc--ceeecccccccCcceEEEEcCC
Confidence 333322211 1111112224689999888774
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.78 E-value=2.4e-09 Score=119.67 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=86.2
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
++..+.-.|.+||+++|.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+|.+..+|.++..+.+|++
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQY 118 (1081)
T ss_pred HHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccc
Confidence 34444445999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eee--c-CccCCcchhcCCccCcccccc
Q 045386 602 LNF--G-SITLPAPPKNYSSSLKNLIFI 626 (706)
Q Consensus 602 L~l--~-~~~lp~~i~~~l~~L~~L~~~ 626 (706)
|++ + ...+|.-+. .++.+..+...
T Consensus 119 LdlS~N~f~~~Pl~i~-~lt~~~~~~~s 145 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIE-VLTAEEELAAS 145 (1081)
T ss_pred cccchhccCCCchhHH-hhhHHHHHhhh
Confidence 999 2 236676666 66555555444
No 22
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=6.1e-09 Score=113.73 Aligned_cols=171 Identities=24% Similarity=0.276 Sum_probs=107.5
Q ss_pred cCcccccEEEecCCCCCcCCccccccc-cCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 525 KKFKHLRVLNFGSAVLDQFPPGLENLF-LLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~lp~~~~~L~-~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
..++.+..|++.++.++.+|...+.+. +|+.|++++|.+..+|..+..+++|+.|++++|.+..+|...+.+++|+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 344567777777777777777666664 7777777777777777677777777777777777777777666777777777
Q ss_pred ecC---ccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCC
Q 045386 604 FGS---ITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 604 l~~---~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
++. ..+|..++ .+..|++|.+.++... ..+..+.++.++..|.+..+ ....++..++.+++|+.|++++|.
T Consensus 193 ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n---~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 193 LSGNKISDLPPEIE-LLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNN---KLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred ccCCccccCchhhh-hhhhhhhhhhcCCcce--ecchhhhhcccccccccCCc---eeeeccchhccccccceecccccc
Confidence 722 25665555 5556777765554211 14555666666666665544 233335666666777777777743
Q ss_pred CCCccccCCcccccccceEEeccc
Q 045386 681 KPSWMVLSEYQFPPSLIQLSLSIV 704 (706)
Q Consensus 681 ~~~l~~l~~~~~p~~L~~L~L~~n 704 (706)
. ...+......+|+.|++++|
T Consensus 267 i---~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 267 I---SSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred c---cccccccccCccCEEeccCc
Confidence 3 22222122256777777665
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=2.3e-08 Score=114.90 Aligned_cols=89 Identities=22% Similarity=0.202 Sum_probs=63.6
Q ss_pred ccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeecCc
Q 045386 528 KHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFGSI 607 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~~~ 607 (706)
++|+.|++++|+++.+|.. +++|++|+|++|.|+.+|.. .++|+.|++++|.+..+|... ++|+.|++...
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N 292 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGN 292 (788)
T ss_pred cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCC
Confidence 3688999999998888853 57899999999999888853 357888888888888777632 46777777222
Q ss_pred ---cCCcchhcCCccCccccccccc
Q 045386 608 ---TLPAPPKNYSSSLKNLIFISAL 629 (706)
Q Consensus 608 ---~lp~~i~~~l~~L~~L~~~~~~ 629 (706)
.+|. .+++|+.|++.++.
T Consensus 293 ~Lt~LP~----~p~~L~~LdLS~N~ 313 (788)
T PRK15387 293 QLTSLPV----LPPGLQELSVSDNQ 313 (788)
T ss_pred ccccccc----cccccceeECCCCc
Confidence 4443 23456777765554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.73 E-value=3.8e-08 Score=113.10 Aligned_cols=70 Identities=23% Similarity=0.136 Sum_probs=54.0
Q ss_pred CcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeee
Q 045386 526 KFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNF 604 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l 604 (706)
.+++|++|+|++|+++.+|.. .++|++|++++|.++.+|... .+|..|++++|.+..+|.. +++|++|++
T Consensus 240 lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdL 309 (788)
T PRK15387 240 LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSV 309 (788)
T ss_pred CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeEC
Confidence 357899999999999988853 357888999998888887533 4577788888877777753 456777777
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=5.8e-09 Score=98.46 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=27.2
Q ss_pred ccCcccccEEEecCCCCCcCCcccc-ccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhh-ccccccce
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLE-NLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDI-WMMQKLMH 601 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~-~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l-~~L~~L~~ 601 (706)
+.+...++.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|.++.++..+ ..+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 445567899999999988764 465 5889999999999999886 6778999999999999999887655 36888888
Q ss_pred eeecCc
Q 045386 602 LNFGSI 607 (706)
Q Consensus 602 L~l~~~ 607 (706)
|+++..
T Consensus 93 L~L~~N 98 (175)
T PF14580_consen 93 LYLSNN 98 (175)
T ss_dssp EE-TTS
T ss_pred EECcCC
Confidence 888433
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.71 E-value=1.3e-09 Score=110.88 Aligned_cols=178 Identities=20% Similarity=0.228 Sum_probs=112.5
Q ss_pred ccccCcccccEEEecCCCCCcC-CccccccccCcEEEccc-CCccccChh-hcCCCCCcEEEccCCCCCccch-hhcccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNI-PSLKRLPSL-LCTLLNLETLEMPSSYIDQSPE-DIWMMQ 597 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~-~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~-~l~~L~ 597 (706)
..|+.+++||.|||+.|+|+.+ |..|..|..|..|-+.+ |+|+.+|+. +++|..||-|.+.-|.+.-++. .|..|+
T Consensus 85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP 164 (498)
T ss_pred hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence 6788999999999999999866 77888898888887766 889999876 6788888888877776665544 566777
Q ss_pred ccceeee--cCc-cCCcc-hhcCCccCccccccc----------------------------------------------
Q 045386 598 KLMHLNF--GSI-TLPAP-PKNYSSSLKNLIFIS---------------------------------------------- 627 (706)
Q Consensus 598 ~L~~L~l--~~~-~lp~~-i~~~l~~L~~L~~~~---------------------------------------------- 627 (706)
+|+.|.+ +.. .++.+ +. .+.+++++.+-.
T Consensus 165 ~l~lLslyDn~~q~i~~~tf~-~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~k 243 (498)
T KOG4237|consen 165 SLSLLSLYDNKIQSICKGTFQ-GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARK 243 (498)
T ss_pred hcchhcccchhhhhhcccccc-chhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhh
Confidence 7766665 111 22221 22 222222221100
Q ss_pred ---------------ccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCCccc
Q 045386 628 ---------------ALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSEYQF 692 (706)
Q Consensus 628 ---------------~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~~~~ 692 (706)
+.....+....|+.|++|++|++++|. ....-+.+|.++.+|+.|.|..|. +...+...|
T Consensus 244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~--i~~i~~~aFe~~a~l~eL~L~~N~---l~~v~~~~f 318 (498)
T KOG4237|consen 244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK--ITRIEDGAFEGAAELQELYLTRNK---LEFVSSGMF 318 (498)
T ss_pred hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc--cchhhhhhhcchhhhhhhhcCcch---HHHHHHHhh
Confidence 001111233347888999999999886 555556677777777777776632 333332222
Q ss_pred --ccccceEEecccC
Q 045386 693 --PPSLIQLSLSIVR 705 (706)
Q Consensus 693 --p~~L~~L~L~~n~ 705 (706)
..+|+.|+|.+|+
T Consensus 319 ~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 319 QGLSGLKTLSLYDNQ 333 (498)
T ss_pred hccccceeeeecCCe
Confidence 2456666666664
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=2e-09 Score=114.33 Aligned_cols=150 Identities=23% Similarity=0.277 Sum_probs=127.5
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
..+.++..|..|||+.|++..+|..++.|+ |+.|-+++|+++.+|..++.+..|..||.+.|.+..+|..+++|.+|+.
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 456788899999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred eee---cCccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCC---CcEEE
Q 045386 602 LNF---GSITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHK---LECLK 675 (706)
Q Consensus 602 L~l---~~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~---L~~L~ 675 (706)
|.+ +...+|+.+. .|+ |.+|+++ |++... .|-.|.+|+.|+.|.+.+| ....-|+.++.+-. .++|+
T Consensus 194 l~vrRn~l~~lp~El~-~Lp-Li~lDfS-cNkis~-iPv~fr~m~~Lq~l~LenN---PLqSPPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELC-SLP-LIRLDFS-CNKISY-LPVDFRKMRHLQVLQLENN---PLQSPPAQICEKGKVHIFKYLS 266 (722)
T ss_pred HHHhhhhhhhCCHHHh-CCc-eeeeecc-cCceee-cchhhhhhhhheeeeeccC---CCCCChHHHHhccceeeeeeec
Confidence 999 3448998888 765 7888854 444444 7889999999999999988 56677777765543 45666
Q ss_pred EeeC
Q 045386 676 LVNE 679 (706)
Q Consensus 676 L~~~ 679 (706)
+..|
T Consensus 267 ~qA~ 270 (722)
T KOG0532|consen 267 TQAC 270 (722)
T ss_pred chhc
Confidence 6665
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=3.7e-09 Score=111.76 Aligned_cols=80 Identities=28% Similarity=0.234 Sum_probs=35.1
Q ss_pred cCcccccEEEecCCCCC-cCCcccccccc---CcEEEcccCCcc-----ccChhhcCC-CCCcEEEccCCCCC-----cc
Q 045386 525 KKFKHLRVLNFGSAVLD-QFPPGLENLFL---LKYLKLNIPSLK-----RLPSLLCTL-LNLETLEMPSSYID-----QS 589 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~-~lp~~~~~L~~---Lr~L~Ls~~~l~-----~lP~~i~~L-~~L~~L~L~~~~~~-----~l 589 (706)
..+++|+.|++++|.+. ..+..+..+.+ |++|++++|.+. .++..+..+ ++|+.|++++|.+. .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 33445555555555543 22233333333 555555555443 122233344 45555555555433 22
Q ss_pred chhhccccccceeee
Q 045386 590 PEDIWMMQKLMHLNF 604 (706)
Q Consensus 590 P~~l~~L~~L~~L~l 604 (706)
+..+..+++|++|++
T Consensus 158 ~~~~~~~~~L~~L~l 172 (319)
T cd00116 158 AKALRANRDLKELNL 172 (319)
T ss_pred HHHHHhCCCcCEEEC
Confidence 333444445555555
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.69 E-value=2.2e-09 Score=109.26 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=81.8
Q ss_pred cccEEEecCCCCCcCCc-cccccccCcEEEcccCCcccc-ChhhcCCCCCcEEEccC-CCCCccch-hhccccccceeee
Q 045386 529 HLRVLNFGSAVLDQFPP-GLENLFLLKYLKLNIPSLKRL-PSLLCTLLNLETLEMPS-SYIDQSPE-DIWMMQKLMHLNF 604 (706)
Q Consensus 529 ~L~~L~L~~~~l~~lp~-~~~~L~~Lr~L~Ls~~~l~~l-P~~i~~L~~L~~L~L~~-~~~~~lP~-~l~~L~~L~~L~l 604 (706)
.-..++|..|+|+.+|+ .|+.+++||.||||+|.|+.| |..+.+|.+|..|-+.+ |.|+.+|. .|++|.+|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 45678999999999985 588999999999999999977 66789999988877766 79999998 7899999999988
Q ss_pred cCc---cCCcc-hhcCCccCcccccccccc
Q 045386 605 GSI---TLPAP-PKNYSSSLKNLIFISALN 630 (706)
Q Consensus 605 ~~~---~lp~~-i~~~l~~L~~L~~~~~~~ 630 (706)
+.. -++.. +. .|++|..|.++++..
T Consensus 148 Nan~i~Cir~~al~-dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 148 NANHINCIRQDALR-DLPSLSLLSLYDNKI 176 (498)
T ss_pred ChhhhcchhHHHHH-Hhhhcchhcccchhh
Confidence 432 34443 55 788887777776654
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.56 E-value=1.8e-08 Score=106.55 Aligned_cols=182 Identities=20% Similarity=0.155 Sum_probs=115.3
Q ss_pred cccCcccccEEEecCCCCCc-------CCccccccccCcEEEcccCCcc-ccChhhcCCCC---CcEEEccCCCCCc---
Q 045386 523 FCKKFKHLRVLNFGSAVLDQ-------FPPGLENLFLLKYLKLNIPSLK-RLPSLLCTLLN---LETLEMPSSYIDQ--- 588 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~-------lp~~~~~L~~Lr~L~Ls~~~l~-~lP~~i~~L~~---L~~L~L~~~~~~~--- 588 (706)
.+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+. ..+..+..+.+ |+.|++++|.+..
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 34566778888888876542 3345667888999999888776 34444554444 8999998886652
Q ss_pred --cchhhccc-cccceeeecCcc--------CCcchhcCCccCcccccccccccCCC---CchhcCCCCCCCeEEEEccC
Q 045386 589 --SPEDIWMM-QKLMHLNFGSIT--------LPAPPKNYSSSLKNLIFISALNPSSC---TPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 589 --lP~~l~~L-~~L~~L~l~~~~--------lp~~i~~~l~~L~~L~~~~~~~~~~~---~~~~l~~L~~L~~L~l~~~~ 654 (706)
++..+..+ ++|+.|++.... ++..+. .+.+|++|++..+...... .+..+..+++|+.|++++|.
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 33455666 788888883222 233355 6667888887665543210 22345566789999998875
Q ss_pred C--cCccchHHhcCCCCCCcEEEEeeCCCCC--ccccCCc--ccccccceEEecccC
Q 045386 655 S--YYQSGVSKSLCELHKLECLKLVNESKPS--WMVLSEY--QFPPSLIQLSLSIVR 705 (706)
Q Consensus 655 ~--~~~~~~~~~l~~l~~L~~L~L~~~~~~~--l~~l~~~--~~p~~L~~L~L~~n~ 705 (706)
. .....++..+..+++|+.|++++|...+ +..+... ...++|++|++++|+
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 1 1223456677788899999998865321 1111000 013689999999885
No 31
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.55 E-value=5.8e-07 Score=98.13 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=81.0
Q ss_pred cccccccHHHHHHHHhcC--CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCC--cceEEEecCCCCHHHHHHHHHHh
Q 045386 187 VSEFERGREELFDLLIEG--PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFD--CLAWVRVSIGYYFGKILDDIINS 262 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~il~~ 262 (706)
++||+++.++|...+... +.....+-|+|.+|+|||++++.+++ ....... ..+++......+...++.+|+++
T Consensus 32 l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 32 LPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 999999999999998542 23345678999999999999999998 4433322 24455555556778899999999
Q ss_pred cCCCCCCccccCC-CHHHHHHHHHHHhc--CCceEEEEccCCC
Q 045386 263 LMPPSRARVIIGE-DYHLKKSILRDYLT--NKKYFIVRDDVFN 302 (706)
Q Consensus 263 l~~~~~~~~~~~~-~~~~~~~~l~~~L~--~kr~LlVlDdvw~ 302 (706)
+...... ... +.+++...+.+.+. ++..+||||+++.
T Consensus 110 l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~ 149 (394)
T PRK00411 110 LFGHPPP---SSGLSFDELFDKIAEYLDERDRVLIVALDDINY 149 (394)
T ss_pred hcCCCCC---CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH
Confidence 9763210 122 56777778888775 3568999999976
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=9.6e-09 Score=100.93 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=105.3
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
...++.|..||||+|.|+.+-+++.-++.+|.|++|+|.|..+-+ +..|++|+.||||+|.+..+-..-.+|-+.+.|.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 345677999999999999888888889999999999999988764 8889999999999998877765556778888888
Q ss_pred e--cCccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 604 F--GSITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 604 l--~~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
+ +.++--.+++ +|-+|..|++.+++.........+|+|+.|..|.+.+|.
T Consensus 359 La~N~iE~LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETLSGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhhhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 8 4444455788 888888888877765443356778999999999998886
No 33
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.51 E-value=3e-06 Score=95.20 Aligned_cols=268 Identities=21% Similarity=0.193 Sum_probs=168.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCC-CCHHHHHHHHHHhcCCCCCCcc-
Q 045386 194 REELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIG-YYFGKILDDIINSLMPPSRARV- 271 (706)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~il~~l~~~~~~~~- 271 (706)
+..+.+.|... ...+.+.|..++|.|||||+-+... .... =..+.|.+.... -|..++..-++..++...+.-.
T Consensus 24 R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~~-~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAAD-GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcCc-ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 45667767654 2589999999999999999998875 2222 235899998764 5678888888888874332100
Q ss_pred -------ccCC-CHHHHHHHHHHHhcC--CceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCccee------
Q 045386 272 -------IIGE-DYHLKKSILRDYLTN--KKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPILL------ 333 (706)
Q Consensus 272 -------~~~~-~~~~~~~~l~~~L~~--kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~------ 333 (706)
.... +...+...+..-+.. ++..+||||-.- +..--..+.-.+.....+-..|||||+.--.
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence 0111 444455555554443 688999999543 2444455555555566678999999997544
Q ss_pred -------------eccccc------cCCCccceeeecccccccCCHHHHHHHHHHhCcCcccCccchhhhhhccc---cc
Q 045386 334 -------------TFFELE------HGGIIPLYSVPVGGPLIRLKHEAWQFFILHYGSAPLVNYMDEKVVLTLLS---RI 391 (706)
Q Consensus 334 -------------af~~~~------c~~glPLai~~~g~~L~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~---~i 391 (706)
+|..++ |-+|+|+-...+..+... .+.|-..++-..-. ..++.+......++. ..
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~--teGW~~al~L~aLa-~~~~~~~~q~~~~LsG~~~~ 256 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDR--TEGWAAALQLIALA-LRNNTSAEQSLRGLSGAASH 256 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhh--cccHHHHHHHHHHH-ccCCCcHHHHhhhccchHHH
Confidence 555333 315588766555544433 55676655432222 111111001111111 11
Q ss_pred -------ccccCCCcchHHHhhhhccCCCCcEEchHhHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCceeeeecCCCCCe
Q 045386 392 -------CSVLELPFHLKVCCLYLCVFRPGIEMSTRQLCQLWIAEGFVPYNGEETAEHYLKELIHRGFIQVSKRRAGGTI 464 (706)
Q Consensus 392 -------~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~li~~W~a~g~i~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~ 464 (706)
=-++.||+++|.-.+-||+++.= -+.|+..-.. ++.+...+++|.+++|+-..-.+. .
T Consensus 257 l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg--------~~ng~amLe~L~~~gLFl~~Ldd~---~ 321 (894)
T COG2909 257 LSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG--------EENGQAMLEELERRGLFLQRLDDE---G 321 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc--------CCcHHHHHHHHHhCCCceeeecCC---C
Confidence 23688999999999999998752 2344443322 567888999999999986543322 2
Q ss_pred eEEEcChhHHHHHHHhhcc
Q 045386 465 KACYVPSFVYTSLGLMADK 483 (706)
Q Consensus 465 ~~~~mHdlv~~~~~~~~~~ 483 (706)
..|+.|.+..+|.+.....
T Consensus 322 ~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 322 QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ceeehhHHHHHHHHhhhcc
Confidence 6899999999999876654
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.48 E-value=1.5e-07 Score=88.95 Aligned_cols=103 Identities=23% Similarity=0.218 Sum_probs=51.3
Q ss_pred CcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhh-cCCCCCcEEEccCCCCCccch--hhcccccccee
Q 045386 526 KFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLL-CTLLNLETLEMPSSYIDQSPE--DIWMMQKLMHL 602 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i-~~L~~L~~L~L~~~~~~~lP~--~l~~L~~L~~L 602 (706)
.+.+|++|+|++|.++.++ .+..+++|+.|++++|.|+.+++.+ ..+++|+.|++++|.+..+-. .+..+++|++|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 5678999999999999875 5788999999999999999998666 469999999999998776643 57788999999
Q ss_pred eecCccC---Cc----chhcCCccCcccccccccc
Q 045386 603 NFGSITL---PA----PPKNYSSSLKNLIFISALN 630 (706)
Q Consensus 603 ~l~~~~l---p~----~i~~~l~~L~~L~~~~~~~ 630 (706)
++.+.++ +. -+. .+++|+.|+...+..
T Consensus 119 ~L~~NPv~~~~~YR~~vi~-~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIY-KLPSLKVLDGQDVTE 152 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHH-H-TT-SEETTEETTS
T ss_pred eccCCcccchhhHHHHHHH-HcChhheeCCEEccH
Confidence 9943322 21 155 677888887765543
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=8.4e-08 Score=104.75 Aligned_cols=150 Identities=28% Similarity=0.403 Sum_probs=124.3
Q ss_pred ccCcc-cccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhcccccccee
Q 045386 524 CKKFK-HLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHL 602 (706)
Q Consensus 524 ~~~l~-~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L 602 (706)
...++ +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+++|+.|++++|.+..+|..+..+..|..|
T Consensus 135 ~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 135 IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEEL 214 (394)
T ss_pred cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhh
Confidence 34443 89999999999999998899999999999999999999988889999999999999999999988788889999
Q ss_pred ee--c-CccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 603 NF--G-SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 603 ~l--~-~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
.+ + ....+..+. .++++..|.+..+.. .. .+..++.+++|+.|+++++. ...++. ++.+.+|+.|+++++
T Consensus 215 ~~~~N~~~~~~~~~~-~~~~l~~l~l~~n~~-~~-~~~~~~~l~~l~~L~~s~n~---i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 215 DLSNNSIIELLSSLS-NLKNLSGLELSNNKL-ED-LPESIGNLSNLETLDLSNNQ---ISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred hhcCCcceecchhhh-hcccccccccCCcee-ee-ccchhccccccceecccccc---cccccc-ccccCccCEEeccCc
Confidence 99 3 347787788 888888887433322 11 36778899999999999885 444444 889999999999884
Q ss_pred C
Q 045386 680 S 680 (706)
Q Consensus 680 ~ 680 (706)
.
T Consensus 288 ~ 288 (394)
T COG4886 288 S 288 (394)
T ss_pred c
Confidence 3
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.3e-07 Score=71.85 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=45.9
Q ss_pred ccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCC
Q 045386 528 KHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYI 586 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~ 586 (706)
++|++|++++|.++.+| ..|..+++|++|++++|.++.+|+ .+.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888888888776 457778888888888888887765 467888888888888753
No 37
>PF05729 NACHT: NACHT domain
Probab=98.42 E-value=7.7e-07 Score=84.18 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=67.4
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCcccc----CCcceEEEecCCCCHH---HHHHHHHHhcCCCCCCccccCCCHHHHH
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFY----FDCLAWVRVSIGYYFG---KILDDIINSLMPPSRARVIIGEDYHLKK 281 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~il~~l~~~~~~~~~~~~~~~~~~ 281 (706)
+++.|+|.+|+||||+++.++..-..... +...+|+......+.. .+...|..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHH--
Confidence 57899999999999999999984322222 4456677665543322 344444443332211 1111
Q ss_pred HHHHHHh-cCCceEEEEccCCC--C-hh-----hHHH-HHhhcCC-CCCCcEEEEeeCCcce
Q 045386 282 SILRDYL-TNKKYFIVRDDVFN--D-SD-----IWDD-LEEVLPD-KQNGSRVLILVTDPIL 332 (706)
Q Consensus 282 ~~l~~~L-~~kr~LlVlDdvw~--~-~~-----~~~~-l~~~l~~-~~~gs~IivTTR~~~v 332 (706)
.+...+ ..++++||+|++.+ + .. .+.. +...++. ..++.+++||||....
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 222222 56899999999877 1 11 1333 3333333 3568999999998754
No 38
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=4.1e-07 Score=91.37 Aligned_cols=94 Identities=10% Similarity=-0.053 Sum_probs=64.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCC--CCHHHHHHHHHHhcCCCCCCccccCC--CHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIG--YYFGKILDDIINSLMPPSRARVIIGE--DYHLKKSI 283 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~il~~l~~~~~~~~~~~~--~~~~~~~~ 283 (706)
-..++|+|.+|+|||||++.+|++.... +|+.++|+.+++. +++.++++++...+-....+.+.... -.......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999965544 8999999998887 89999999993332222111000010 11223333
Q ss_pred HHHH-hcCCceEEEEccCCC
Q 045386 284 LRDY-LTNKKYFIVRDDVFN 302 (706)
Q Consensus 284 l~~~-L~~kr~LlVlDdvw~ 302 (706)
...+ -.|++.++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 3332 247999999999865
No 39
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.37 E-value=1.2e-06 Score=79.53 Aligned_cols=114 Identities=16% Similarity=0.233 Sum_probs=79.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcccc-----CCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFY-----FDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKS 282 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~ 282 (706)
-+++.|+|.+|+|||++++.+.++ .... -..++|+.+....+...+...|+.+++..... ..+..++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHH
Confidence 578999999999999999999983 3221 23467999888889999999999999987652 116778888
Q ss_pred HHHHHhcCCc-eEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 283 ILRDYLTNKK-YFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 283 ~l~~~L~~kr-~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
.+.+.+...+ .+||+|++.. +...++.++.... ..+.+||+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 8888887655 4999999865 1234455544443 556677776543
No 40
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.34 E-value=2.4e-06 Score=92.33 Aligned_cols=110 Identities=18% Similarity=0.095 Sum_probs=78.8
Q ss_pred cccccccHHHHHHHHhcC--CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCC------cceEEEecCCCCHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG--PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFD------CLAWVRVSIGYYFGKILDD 258 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~------~~~wv~vs~~~~~~~i~~~ 258 (706)
++||++++++|...|... ......+.|+|++|+|||++++.+++. .....+ ..+|+......+...++..
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 999999999999998742 233567899999999999999999983 322111 2456666666677889999
Q ss_pred HHHhcCC---CCCCccccCC-CHHHHHHHHHHHhc--CCceEEEEccCCC
Q 045386 259 IINSLMP---PSRARVIIGE-DYHLKKSILRDYLT--NKKYFIVRDDVFN 302 (706)
Q Consensus 259 il~~l~~---~~~~~~~~~~-~~~~~~~~l~~~L~--~kr~LlVlDdvw~ 302 (706)
|++++.. ... ... +..++...+.+.+. +++++||||+++.
T Consensus 95 i~~~l~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 95 LANQLRGSGEEVP----TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred HHHHHhhcCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 9999842 211 111 45556666666663 5678999999987
No 41
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.32 E-value=1e-05 Score=83.29 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=70.4
Q ss_pred HHHHHHHHhcC-CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccc
Q 045386 194 REELFDLLIEG-PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVI 272 (706)
Q Consensus 194 ~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~ 272 (706)
..++++.+... ..+..++.|+|.+|+||||+++.+++..... .+ ..+|+ +....+..+++..|+..++.....
T Consensus 28 ~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~--- 101 (269)
T TIGR03015 28 HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG--- 101 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC---
Confidence 34455544321 1235689999999999999999999853321 11 12233 334567888999999988765321
Q ss_pred cCC--CHHHHHHHHHHHh-cCCceEEEEccCCC-ChhhHHHHHhh
Q 045386 273 IGE--DYHLKKSILRDYL-TNKKYFIVRDDVFN-DSDIWDDLEEV 313 (706)
Q Consensus 273 ~~~--~~~~~~~~l~~~L-~~kr~LlVlDdvw~-~~~~~~~l~~~ 313 (706)
... ....+...+.... .+++++||+||+|. +...++.+...
T Consensus 102 ~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l 146 (269)
T TIGR03015 102 RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRML 146 (269)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHH
Confidence 110 1223333333333 67889999999998 45567776643
No 42
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.30 E-value=6.2e-07 Score=93.87 Aligned_cols=105 Identities=11% Similarity=-0.013 Sum_probs=66.6
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC--CHHHHHHHHHHhcCCCCCCcc-c
Q 045386 196 ELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY--YFGKILDDIINSLMPPSRARV-I 272 (706)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~il~~l~~~~~~~~-~ 272 (706)
++++.+..=. .-.-.+|+|.+|+||||||+.||++.... +|+.++||.+++.. ++.+++++|...+-....+++ .
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 3444444321 24568999999999999999999965444 89999999999988 788888888632221111100 0
Q ss_pred cCC-CHHHHHHHHHHH-hcCCceEEEEccCCC
Q 045386 273 IGE-DYHLKKSILRDY-LTNKKYFIVRDDVFN 302 (706)
Q Consensus 273 ~~~-~~~~~~~~l~~~-L~~kr~LlVlDdvw~ 302 (706)
... -.....+..+.+ -.|++.+|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 000 111122222222 267999999999865
No 43
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=5.9e-06 Score=75.99 Aligned_cols=123 Identities=17% Similarity=0.049 Sum_probs=70.8
Q ss_pred ccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCC
Q 045386 188 SEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPS 267 (706)
Q Consensus 188 vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~ 267 (706)
+|++..+..+...+.... .+.+.|+|.+|+||||+++.+++. ....-..++++..++..........+..
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~------ 70 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGH------ 70 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhh------
Confidence 467888888888886543 568889999999999999999984 3222234556655443322211111100
Q ss_pred CCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCC------CCCcEEEEeeCCc
Q 045386 268 RARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDK------QNGSRVLILVTDP 330 (706)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~------~~gs~IivTTR~~ 330 (706)
. ............+..+||+||++. .......+...+... ..+..||+||...
T Consensus 71 --------~--~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 71 --------F--LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred --------h--hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0 001111222345678999999985 112222333333221 3577888888765
No 44
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.29 E-value=1.3e-06 Score=84.34 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=42.1
Q ss_pred cccccccHHHHHHHHh-cCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCC-----CCHHHHHHHHH
Q 045386 187 VSEFERGREELFDLLI-EGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIG-----YYFGKILDDII 260 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~il 260 (706)
|+||+++.+++...|. ......+.+.|+|.+|+|||+|.+.++. .........+.+..... .....++++++
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAERGGYVISINCDDSERNPYSPFRSALRQLI 79 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHHT--EEEEEEETTTS-HHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEEEeccccchhhHHHHHHHHHH
Confidence 7999999999999994 2234579999999999999999999998 55544211222222222 11355666666
Q ss_pred HhcCC
Q 045386 261 NSLMP 265 (706)
Q Consensus 261 ~~l~~ 265 (706)
.++..
T Consensus 80 ~~~~~ 84 (185)
T PF13191_consen 80 DQLLD 84 (185)
T ss_dssp -----
T ss_pred HHhhc
Confidence 65443
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.3e-06 Score=100.36 Aligned_cols=100 Identities=20% Similarity=0.304 Sum_probs=81.5
Q ss_pred cccEEEecCCCCC-cCCccccccccCcEEEcccCCcc-ccChhhcCCCCCcEEEccCCCCC-ccchhhccccccceeeec
Q 045386 529 HLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-RLPSLLCTLLNLETLEMPSSYID-QSPEDIWMMQKLMHLNFG 605 (706)
Q Consensus 529 ~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~~l~-~lP~~i~~L~~L~~L~L~~~~~~-~lP~~l~~L~~L~~L~l~ 605 (706)
.+..|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 78889999999999999999987 88989999999999999999765 788899999999999993
Q ss_pred C--c--cCCcchhcCC-ccCccccccccc
Q 045386 606 S--I--TLPAPPKNYS-SSLKNLIFISAL 629 (706)
Q Consensus 606 ~--~--~lp~~i~~~l-~~L~~L~~~~~~ 629 (706)
. . .+|..++ .+ .++..+.+..+.
T Consensus 499 ~N~l~g~iP~~l~-~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALG-GRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHh-hccccCceEEecCCc
Confidence 2 2 6787777 43 355556554443
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.8e-07 Score=96.88 Aligned_cols=181 Identities=18% Similarity=0.158 Sum_probs=101.7
Q ss_pred cccCcccccEEEecCCCCCc---CCccccccccCcEEEcccCCccccChhh--cCCCCCcEEEccCCCCC--ccchhhcc
Q 045386 523 FCKKFKHLRVLNFGSAVLDQ---FPPGLENLFLLKYLKLNIPSLKRLPSLL--CTLLNLETLEMPSSYID--QSPEDIWM 595 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~---lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i--~~L~~L~~L~L~~~~~~--~lP~~l~~ 595 (706)
....|++++.|||+.|-+.. +-.-...|++|+.|+|+.|.+...-.+. ..+.+|..|.|+.|.++ ++-.-+-.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34567778888888777652 2233456778888888877765332221 35677778888887554 22223445
Q ss_pred ccccceeeecCc--cC--CcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccc----hHHhcCC
Q 045386 596 MQKLMHLNFGSI--TL--PAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSG----VSKSLCE 667 (706)
Q Consensus 596 L~~L~~L~l~~~--~l--p~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~----~~~~l~~ 667 (706)
+|+|..|++... .+ -.... .++.|+.|++.+++..........+.|+.|+.|+++.+....... ...-...
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~-i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTK-ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhh-hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 677777777211 11 11123 445677777776665443344566777777777777665111111 1112345
Q ss_pred CCCCcEEEEeeCCCCCccccCCcccccccceEEeccc
Q 045386 668 LHKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIV 704 (706)
Q Consensus 668 l~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n 704 (706)
+++|++|++..|...++..+....+.+||+.|.+.+|
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 6778888887765422333332334456666654443
No 47
>PF13173 AAA_14: AAA domain
Probab=98.24 E-value=2.1e-06 Score=77.55 Aligned_cols=100 Identities=13% Similarity=0.165 Sum_probs=67.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
-+++.|.|+-|+||||++++++.+.. .-..++++...+....... ..+ +.+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~--------------------~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA--------------------DPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------hhh-hHHHHHHh
Confidence 46899999999999999999997432 2344666654433221100 001 23444444
Q ss_pred hcCCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 288 LTNKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 288 L~~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
...++.+|++|++.. ..+|......+-+..+..+|++|+.+...
T Consensus 58 ~~~~~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTGSSSSL 101 (128)
T ss_pred hccCCcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEccchHH
Confidence 445778899999999 77888887777766667899999877643
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.3e-07 Score=96.11 Aligned_cols=178 Identities=17% Similarity=0.096 Sum_probs=122.8
Q ss_pred cCcccccEEEecCCCCCcCC--ccccccccCcEEEcccCCccc---cChhhcCCCCCcEEEccCCCCCccchh--hcccc
Q 045386 525 KKFKHLRVLNFGSAVLDQFP--PGLENLFLLKYLKLNIPSLKR---LPSLLCTLLNLETLEMPSSYIDQSPED--IWMMQ 597 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~lp--~~~~~L~~Lr~L~Ls~~~l~~---lP~~i~~L~~L~~L~L~~~~~~~lP~~--l~~L~ 597 (706)
++++.|+...|.++.+...+ .....|++++.||||.|-+.. +-.-...|++|+.|+|+.|.+...-.+ -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 56788999999999877655 367789999999999987653 334457899999999999965543322 23577
Q ss_pred ccceeeecCccC-----CcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCc
Q 045386 598 KLMHLNFGSITL-----PAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLE 672 (706)
Q Consensus 598 ~L~~L~l~~~~l-----p~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 672 (706)
.|+.|.++.+.+ -.-.. .+++|..|.+..++.... ......-+..|+.|+|++|.. ........++.++.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~-~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILL-TFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHH-hCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCcc-cccccccccccccchh
Confidence 888888833322 11233 567888888877753211 233345567889999998851 1122225677899999
Q ss_pred EEEEeeCCCCCccccC-----CcccccccceEEecccC
Q 045386 673 CLKLVNESKPSWMVLS-----EYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 673 ~L~L~~~~~~~l~~l~-----~~~~p~~L~~L~L~~n~ 705 (706)
.|+++.++.+++...+ ....-++|++|++..|.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 9999998764433333 23334789999999885
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.3e-06 Score=67.64 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=50.6
Q ss_pred ccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccccceeeecC
Q 045386 551 FLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFGS 606 (706)
Q Consensus 551 ~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~~ 606 (706)
++|++|++++|++..+|+ .+.++++|++|++++|.+..+|+ .|.++++|++|++.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 579999999999999996 57899999999999999999986 789999999999843
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.4e-06 Score=60.08 Aligned_cols=39 Identities=33% Similarity=0.413 Sum_probs=23.4
Q ss_pred cCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccc
Q 045386 552 LLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSP 590 (706)
Q Consensus 552 ~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP 590 (706)
+|++|++++|.|+.+|+.+++|++|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666655666666666666666665554
No 51
>PTZ00202 tuzin; Provisional
Probab=98.04 E-value=8.2e-05 Score=78.62 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=68.0
Q ss_pred cccccccHHHHHHHHhcCC-CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCC
Q 045386 187 VSEFERGREELFDLLIEGP-SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMP 265 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~ 265 (706)
|+||+.+...+...|...+ ...+++.|+|++|+|||||++.+... .. + .+++.-+. +..++++.|+.+|+.
T Consensus 264 FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~--~qL~vNpr--g~eElLr~LL~ALGV 335 (550)
T PTZ00202 264 FVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M--PAVFVDVR--GTEDTLRSVVKALGV 335 (550)
T ss_pred CCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c--eEEEECCC--CHHHHHHHHHHHcCC
Confidence 9999999999999997533 23569999999999999999999973 32 1 13332233 779999999999997
Q ss_pred CCCCccccCCCHHHHHHHHHHHh-----c-CCceEEEEc
Q 045386 266 PSRARVIIGEDYHLKKSILRDYL-----T-NKKYFIVRD 298 (706)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVlD 298 (706)
+... ...++...|.+.+ . |++.+||+-
T Consensus 336 ~p~~------~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 336 PNVE------ACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred CCcc------cHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4321 2334444444444 2 456666553
No 52
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.02 E-value=1.5e-05 Score=79.85 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=41.5
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIG 249 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 249 (706)
|+||+++.++|.+++..+. .+.+.|+|..|+|||+|++++.+ ..+..-...+|+...+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~ 59 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEE 59 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTB
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccc
Confidence 6899999999999997654 67899999999999999999998 44322113445544343
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.02 E-value=8.5e-07 Score=87.51 Aligned_cols=126 Identities=18% Similarity=0.103 Sum_probs=84.8
Q ss_pred cccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeecCccC--CcchhcCCccCccccccc
Q 045386 550 LFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFGSITL--PAPPKNYSSSLKNLIFIS 627 (706)
Q Consensus 550 L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~~~~l--p~~i~~~l~~L~~L~~~~ 627 (706)
...|+.||||+|.|+.+.+++.-++.++.|++|+|.+..+-. +..|++|.+|++++..+ -.++..+|.++++|.+..
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 445788888888888888888888888888888887776654 77788888888843322 123332566777777655
Q ss_pred ccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCC
Q 045386 628 ALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 628 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
+.. .....+++|-+|..|++++|.....+.+ ..+++++.|+.|.|.+|.
T Consensus 362 N~i---E~LSGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 362 NKI---ETLSGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhH---hhhhhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCC
Confidence 433 1455566777777788877752222222 477788888888887743
No 54
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.02 E-value=1.2e-05 Score=84.89 Aligned_cols=94 Identities=10% Similarity=-0.055 Sum_probs=63.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCC--CCHHHHHHHHHHhcCCCCCCccccCC--CHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIG--YYFGKILDDIINSLMPPSRARVIIGE--DYHLKKSI 283 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~il~~l~~~~~~~~~~~~--~~~~~~~~ 283 (706)
-..++|+|.+|+|||||++.+++..... +|+..+||.+++. .++.++++.|+..+-....+.+.... -.+.+.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 4679999999999999999999954333 7999999999966 78999999995443332221100000 11122222
Q ss_pred HHHH-hcCCceEEEEccCCC
Q 045386 284 LRDY-LTNKKYFIVRDDVFN 302 (706)
Q Consensus 284 l~~~-L~~kr~LlVlDdvw~ 302 (706)
.... -.|++.+|++|.+..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 257999999999866
No 55
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.01 E-value=5.8e-05 Score=80.04 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=39.6
Q ss_pred CccccccccccHHHHHHHHhc---CCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 183 HWLDVSEFERGREELFDLLIE---GPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.+.+++|+++.++.+..++.. .......+-++|++|+||||||+.+.+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 344499999999998887753 2334667889999999999999999993
No 56
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.98 E-value=3.7e-05 Score=80.78 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=38.1
Q ss_pred ccccccccHHHHHHHHhcC---CCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 186 DVSEFERGREELFDLLIEG---PSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+|+|++..++++..++... ......+.++|++|+|||+||+.+.+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999998888632 233556889999999999999999983
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2.9e-05 Score=82.37 Aligned_cols=153 Identities=22% Similarity=0.279 Sum_probs=96.1
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccC-CccccChhhcCCCCCcEEEccCC-CCCccchhhccccccce
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIP-SLKRLPSLLCTLLNLETLEMPSS-YIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~-~l~~lP~~i~~L~~L~~L~L~~~-~~~~lP~~l~~L~~L~~ 601 (706)
+..++.++.|++++|.++.+|. -..+|+.|.++++ .++.+|..+. .+|++|++++| .+..+|.+ |++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 3456889999999999998882 2347999999984 6788887663 58999999999 88888865 455
Q ss_pred eeecC------ccCCcchhcCCccCcccccccccccCCCCchhcC-CC-CCCCeEEEEccCCcCccchHHhcCCCCCCcE
Q 045386 602 LNFGS------ITLPAPPKNYSSSLKNLIFISALNPSSCTPDILD-RL-PSVRTLRISGDLSYYQSGVSKSLCELHKLEC 673 (706)
Q Consensus 602 L~l~~------~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~-~L-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 673 (706)
|++.. ..+|. +|+.|.+...+.. ....+. .| ++|+.|.+.+|. ...+|..+. .+|+.
T Consensus 117 L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~---~~~~lp~~LPsSLk~L~Is~c~---~i~LP~~LP--~SLk~ 181 (426)
T PRK15386 117 LEIKGSATDSIKNVPN-------GLTSLSINSYNPE---NQARIDNLISPSLKTLSLTGCS---NIILPEKLP--ESLQS 181 (426)
T ss_pred EEeCCCCCcccccCcc-------hHhheeccccccc---cccccccccCCcccEEEecCCC---cccCccccc--ccCcE
Confidence 55522 13443 3445554322211 111111 23 579999998775 223444443 58999
Q ss_pred EEEeeCCCCCccccCCcccccccceEEeccc
Q 045386 674 LKLVNESKPSWMVLSEYQFPPSLIQLSLSIV 704 (706)
Q Consensus 674 L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n 704 (706)
|.++.+....+ .+....+|+++ .|++.+|
T Consensus 182 L~ls~n~~~sL-eI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 182 ITLHIEQKTTW-NISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred EEecccccccc-cCccccccccc-Eechhhh
Confidence 99876421111 12334566777 7777765
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=7e-06 Score=58.49 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=35.7
Q ss_pred ccccEEEecCCCCCcCCccccccccCcEEEcccCCccccC
Q 045386 528 KHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLP 567 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP 567 (706)
++|++|++++|+++.+|+.+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4799999999999999988999999999999999999876
No 59
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.89 E-value=3.9e-05 Score=83.99 Aligned_cols=110 Identities=19% Similarity=0.112 Sum_probs=65.9
Q ss_pred ccccccccccHHH---HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHH
Q 045386 184 WLDVSEFERGREE---LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDII 260 (706)
Q Consensus 184 ~~~~vGr~~~~~~---i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 260 (706)
+.+++|.+..+.. +.+++.... ...+.++|.+|+||||+|+.+++ ..... |+.++....-.+
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~--~~~~~-----~~~l~a~~~~~~------ 75 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAG--ATDAP-----FEALSAVTSGVK------ 75 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHH--HhCCC-----EEEEecccccHH------
Confidence 3448888877555 777765543 56788899999999999999998 33333 333332211111
Q ss_pred HhcCCCCCCccccCCCHHHHHHHHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEe
Q 045386 261 NSLMPPSRARVIIGEDYHLKKSILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLIL 326 (706)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivT 326 (706)
+...+.+..... ..+++.+|++|+++. .....+.+...+. .|+.++|.
T Consensus 76 ---------------~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~ 125 (413)
T PRK13342 76 ---------------DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIG 125 (413)
T ss_pred ---------------HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEE
Confidence 112222222221 145788999999987 3555666655553 25555553
No 60
>PLN03150 hypothetical protein; Provisional
Probab=97.83 E-value=2.8e-05 Score=89.52 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=65.2
Q ss_pred cCcEEEcccCCcc-ccChhhcCCCCCcEEEccCCCCC-ccchhhccccccceeee--cCc--cCCcchhcCCccCccccc
Q 045386 552 LLKYLKLNIPSLK-RLPSLLCTLLNLETLEMPSSYID-QSPEDIWMMQKLMHLNF--GSI--TLPAPPKNYSSSLKNLIF 625 (706)
Q Consensus 552 ~Lr~L~Ls~~~l~-~lP~~i~~L~~L~~L~L~~~~~~-~lP~~l~~L~~L~~L~l--~~~--~lp~~i~~~l~~L~~L~~ 625 (706)
.++.|+|++|.+. .+|..+++|++|+.|+|++|.+. .+|..++.+++|+.|++ +.. .+|..++ .+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEEC
Confidence 3677788877776 67777888888888888888664 67777777777777777 222 4566666 6667777666
Q ss_pred ccccccCCCCchhcCCC-CCCCeEEEEccC
Q 045386 626 ISALNPSSCTPDILDRL-PSVRTLRISGDL 654 (706)
Q Consensus 626 ~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~ 654 (706)
..+..... .|..++.+ .++..+++.+|.
T Consensus 498 s~N~l~g~-iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGR-VPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCccccc-CChHHhhccccCceEEecCCc
Confidence 55544333 55555443 344555555553
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=9.2e-06 Score=93.27 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=90.0
Q ss_pred ccccEEEecCCC-CC-cCCccccc-cccCcEEEcccCCcc--ccChhhcCCCCCcEEEccCCCCCccchhhcccccccee
Q 045386 528 KHLRVLNFGSAV-LD-QFPPGLEN-LFLLKYLKLNIPSLK--RLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHL 602 (706)
Q Consensus 528 ~~L~~L~L~~~~-l~-~lp~~~~~-L~~Lr~L~Ls~~~l~--~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L 602 (706)
.+|+.||++|.. +. .-|..++. ||+|+.|.+++-.+. ++-.-..+++||..||+|+|+++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 568889998876 33 34566665 889999999886543 3333346788999999999988888 678888888888
Q ss_pred eecCccCCc-----chhcCCccCcccccccccccCCC-----CchhcCCCCCCCeEEEEccCCcCccc-hHHhcCCCCCC
Q 045386 603 NFGSITLPA-----PPKNYSSSLKNLIFISALNPSSC-----TPDILDRLPSVRTLRISGDLSYYQSG-VSKSLCELHKL 671 (706)
Q Consensus 603 ~l~~~~lp~-----~i~~~l~~L~~L~~~~~~~~~~~-----~~~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L 671 (706)
.+....+-. .+. .|++|+.|+++........ ..+.-..||+||.|+.++.. ..+. +...+...++|
T Consensus 201 ~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd--i~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD--INEEILEELLNSHPNL 277 (699)
T ss_pred hccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc--hhHHHHHHHHHhCccH
Confidence 774333222 355 6677777776554433221 01112346777777777654 2222 22233344555
Q ss_pred cEEEEe
Q 045386 672 ECLKLV 677 (706)
Q Consensus 672 ~~L~L~ 677 (706)
+.+.+-
T Consensus 278 ~~i~~~ 283 (699)
T KOG3665|consen 278 QQIAAL 283 (699)
T ss_pred hhhhhh
Confidence 555433
No 62
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.82 E-value=7.5e-05 Score=85.35 Aligned_cols=147 Identities=17% Similarity=0.135 Sum_probs=92.2
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC---CcceEEEecCC---CCHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF---DCLAWVRVSIG---YYFGKI 255 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~i 255 (706)
..+.+++|++..+..+.+.+... ....+.|+|.+|+||||+|+.+++..+....+ ...-|+.+... .+...+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 34444999999999888887543 35679999999999999999998854433333 23456666432 223332
Q ss_pred HHHH---------------HHhcCCCCCC---------cc----ccCCCHHHHHHHHHHHhcCCceEEEEccCCC-Chhh
Q 045386 256 LDDI---------------INSLMPPSRA---------RV----IIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDI 306 (706)
Q Consensus 256 ~~~i---------------l~~l~~~~~~---------~~----~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~ 306 (706)
...+ +...+..... .. ..+.-....+..+.+.+++++++++-|+.|. +...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 2211 1221211000 00 1111123467889999999999999888777 4667
Q ss_pred HHHHHhhcCCCCCCcEEEE--eeCCc
Q 045386 307 WDDLEEVLPDKQNGSRVLI--LVTDP 330 (706)
Q Consensus 307 ~~~l~~~l~~~~~gs~Iiv--TTR~~ 330 (706)
|+.++..+....+...|++ ||++.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccc
Confidence 8888887776666665666 55554
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.80 E-value=0.00015 Score=77.28 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=37.7
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 184 WLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.+++|++..++.+..++..+. ...+-++|..|+||||+|+.+.+
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3448999999999988886643 44678999999999999999987
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=2.3e-06 Score=93.90 Aligned_cols=169 Identities=22% Similarity=0.170 Sum_probs=92.3
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
+..++.|..|++.+|.+..+...+..+++|++|++++|.|+.+. .+..|..|+.|++++|.+..++ .+..+++|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhccc
Confidence 56667777777777777766655677777777777777777665 5666667777777777776665 344566777777
Q ss_pred ecCc---cCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCC--CCcEEEEe
Q 045386 604 FGSI---TLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELH--KLECLKLV 677 (706)
Q Consensus 604 l~~~---~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~--~L~~L~L~ 677 (706)
++.. .++.. .. .+.+|+.+.+..+... .+..+..+..+..+++..+..... ..+..+. +|+.+++.
T Consensus 169 l~~n~i~~ie~~~~~-~~~~l~~l~l~~n~i~---~i~~~~~~~~l~~~~l~~n~i~~~----~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 169 LSYNRIVDIENDELS-ELISLEELDLGGNSIR---EIEGLDLLKKLVLLSLLDNKISKL----EGLNELVMLHLRELYLS 240 (414)
T ss_pred CCcchhhhhhhhhhh-hccchHHHhccCCchh---cccchHHHHHHHHhhcccccceec----cCcccchhHHHHHHhcc
Confidence 6322 22221 24 5555665555443331 222233333333334433321111 1111222 37788887
Q ss_pred eCCCCCc-cccCCcccccccceEEecccC
Q 045386 678 NESKPSW-MVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 678 ~~~~~~l-~~l~~~~~p~~L~~L~L~~n~ 705 (706)
++..... ..+ ....++..|++..|+
T Consensus 241 ~n~i~~~~~~~---~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 241 GNRISRSPEGL---ENLKNLPVLDLSSNR 266 (414)
T ss_pred cCccccccccc---cccccccccchhhcc
Confidence 7543221 111 223567777776654
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=3.4e-06 Score=92.56 Aligned_cols=149 Identities=23% Similarity=0.266 Sum_probs=104.8
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchh-hcccccccee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHL 602 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L 602 (706)
+..+.+|++|++++|.|+.+. .+..++.|+.|++++|.|..++ .+..+.+|+.+++++|.+..++.. +..+.+|+.+
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEEL 191 (414)
T ss_pred hhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHH
Confidence 678999999999999998774 4677888999999999998886 555699999999999988888764 5788899999
Q ss_pred eecC--ccCCcchhcCCccCcccccccccccCCCCchhcCCCCC--CCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 603 NFGS--ITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPS--VRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 603 ~l~~--~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~--L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
++.. .....++. .+..+..+.+..+.. .....+..+.. |+.+.+..+. ....+..+..+..+..|++..
T Consensus 192 ~l~~n~i~~i~~~~-~~~~l~~~~l~~n~i---~~~~~l~~~~~~~L~~l~l~~n~---i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 192 DLGGNSIREIEGLD-LLKKLVLLSLLDNKI---SKLEGLNELVMLHLRELYLSGNR---ISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred hccCCchhcccchH-HHHHHHHhhcccccc---eeccCcccchhHHHHHHhcccCc---cccccccccccccccccchhh
Confidence 8833 33333444 334443343222221 12333333443 7888888774 333335677788888888888
Q ss_pred CCC
Q 045386 679 ESK 681 (706)
Q Consensus 679 ~~~ 681 (706)
+..
T Consensus 265 n~~ 267 (414)
T KOG0531|consen 265 NRI 267 (414)
T ss_pred ccc
Confidence 543
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00022 Score=80.75 Aligned_cols=168 Identities=10% Similarity=0.030 Sum_probs=91.9
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 261 (706)
..+.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.-...++. ..+..=...+.|..
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~~ 84 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREIDE 84 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHhc
Confidence 344559999999999999987653 2345569999999999999887763111111100 00000000111110
Q ss_pred hcCCCCCCccccCC-CHHHHHHHHHHHh----cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCcceeec
Q 045386 262 SLMPPSRARVIIGE-DYHLKKSILRDYL----TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDPILLTF 335 (706)
Q Consensus 262 ~l~~~~~~~~~~~~-~~~~~~~~l~~~L----~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~af 335 (706)
.-....-....... ..+++.+.+.... .++.-++|||++.. ....|+.+...+.....+.++|+||.+.
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~----- 159 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP----- 159 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh-----
Confidence 00000000000011 2333333332221 24555888999988 4567888888777666688889888876
Q ss_pred cccccCCCccceeeecccccccCC--HHHHHHHHH
Q 045386 336 FELEHGGIIPLYSVPVGGPLIRLK--HEAWQFFIL 368 (706)
Q Consensus 336 ~~~~c~~glPLai~~~g~~L~~~~--~~~w~~~~~ 368 (706)
..+|-.|..-...+..++ .+++...+.
T Consensus 160 ------~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~ 188 (830)
T PRK07003 160 ------QKIPVTVLSRCLQFNLKQMPAGHIVSHLE 188 (830)
T ss_pred ------hhccchhhhheEEEecCCcCHHHHHHHHH
Confidence 555555554445555555 555554443
No 67
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0002 Score=76.34 Aligned_cols=110 Identities=18% Similarity=0.122 Sum_probs=84.2
Q ss_pred cccccccHHHHHHHHhcC--CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCc--ceEEEecCCCCHHHHHHHHHHh
Q 045386 187 VSEFERGREELFDLLIEG--PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDC--LAWVRVSIGYYFGKILDDIINS 262 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~i~~~il~~ 262 (706)
+.+|+++++++...|..- +....-+-|+|..|.|||+.++.|.+ ++...... .++|..-...+..+++.+|+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 899999999999988652 22233489999999999999999999 66655432 5777777788899999999999
Q ss_pred cCCCCCCccccCCCHHHHHHHHHHHhc--CCceEEEEccCCC
Q 045386 263 LMPPSRARVIIGEDYHLKKSILRDYLT--NKKYFIVRDDVFN 302 (706)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~ 302 (706)
++.... ......+..+.+.+.+. ++.++||||++..
T Consensus 97 ~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 97 LGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred cCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 973322 11155666777777775 4789999999977
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00027 Score=78.85 Aligned_cols=150 Identities=12% Similarity=0.053 Sum_probs=89.3
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc---------------------cCCc
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF---------------------YFDC 240 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~ 240 (706)
..+.+++|-+..+..+.+.+..+. -...+-++|..|+||||+|+.+.+. +.- .|..
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~--L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKC--LNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 344559999999999999887643 3455778999999999999999862 210 0111
Q ss_pred ceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCC
Q 045386 241 LAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQ 318 (706)
Q Consensus 241 ~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~ 318 (706)
.+++.......++ +..++.+.+... ..+++-++|+|++.. ....++.+...+....
T Consensus 90 lieidaas~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp 147 (546)
T PRK14957 90 LIEIDAASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP 147 (546)
T ss_pred eEEeecccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC
Confidence 1111111111111 222333333221 235667999999976 4667888888887766
Q ss_pred CCcEEEEeeCCcceeeccccccCCCccceeeecccccccCC--HHHHHHHH
Q 045386 319 NGSRVLILVTDPILLTFFELEHGGIIPLYSVPVGGPLIRLK--HEAWQFFI 367 (706)
Q Consensus 319 ~gs~IivTTR~~~v~af~~~~c~~glPLai~~~g~~L~~~~--~~~w~~~~ 367 (706)
..+.+|++|.+. ..+|-+|..-+..++.++ .+++...+
T Consensus 148 ~~v~fIL~Ttd~-----------~kil~tI~SRc~~~~f~~Ls~~eI~~~L 187 (546)
T PRK14957 148 EYVKFILATTDY-----------HKIPVTILSRCIQLHLKHISQADIKDQL 187 (546)
T ss_pred CCceEEEEECCh-----------hhhhhhHHHheeeEEeCCCCHHHHHHHH
Confidence 677777666444 455555554455555555 44444333
No 69
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.68 E-value=0.00031 Score=80.11 Aligned_cols=110 Identities=10% Similarity=0.030 Sum_probs=74.1
Q ss_pred cccccccHHHHHHHHhcC---CCCcEEEEEEcCCCchhhHHHHHHHcCCCcc-----ccCCc--ceEEEecCCCCHHHHH
Q 045386 187 VSEFERGREELFDLLIEG---PSGLSVIAILDSNGFDKTVFAADIYNNNHVK-----FYFDC--LAWVRVSIGYYFGKIL 256 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~--~~wv~vs~~~~~~~i~ 256 (706)
+.||+++.++|...|... .....++-|.|.+|.|||+.++.|.+ ++. ...+. +++|....-.+...++
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLr--ELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQ--LLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHH--HHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 899999999999988652 22346788999999999999999987 332 12222 3444444446788899
Q ss_pred HHHHHhcCCCCCCccccCC-CHHHHHHHHHHHhcC---CceEEEEccCCC
Q 045386 257 DDIINSLMPPSRARVIIGE-DYHLKKSILRDYLTN---KKYFIVRDDVFN 302 (706)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~~---kr~LlVlDdvw~ 302 (706)
..|.+++...... .. ...+....+...+.. ...+||||+|..
T Consensus 835 qvI~qqL~g~~P~----~GlsS~evLerLF~~L~k~~r~v~IIILDEID~ 880 (1164)
T PTZ00112 835 QVLYKQLFNKKPP----NALNSFKILDRLFNQNKKDNRNVSILIIDEIDY 880 (1164)
T ss_pred HHHHHHHcCCCCC----ccccHHHHHHHHHhhhhcccccceEEEeehHhh
Confidence 9999998544321 11 333444555554422 245899999876
No 70
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00038 Score=73.35 Aligned_cols=123 Identities=12% Similarity=0.208 Sum_probs=79.8
Q ss_pred ccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC----CCccccCCcceEEEe-cCCCCHHHHHHHHH
Q 045386 186 DVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN----NHVKFYFDCLAWVRV-SIGYYFGKILDDII 260 (706)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~i~~~il 260 (706)
+++|-+..++.+.+.+..+. -....-++|..|+||||+|+.++.. .....|+|...|... +....+++ .+++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 37898888999999886543 3457789999999999999888872 123345665555432 22233333 22233
Q ss_pred HhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 261 NSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
+.+.... ..+++-++|+|++.. ....|+.+...+.....++.+|++|.+.
T Consensus 83 ~~~~~~p--------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~ 133 (313)
T PRK05564 83 EEVNKKP--------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENL 133 (313)
T ss_pred HHHhcCc--------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 3322111 123444556665543 3888999999999888899999999665
No 71
>PRK06893 DNA replication initiation factor; Validated
Probab=97.68 E-value=0.00014 Score=72.86 Aligned_cols=92 Identities=13% Similarity=0.241 Sum_probs=54.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
...+.++|.+|+|||+|++.+++ +.......+.|++++.. ... .. .+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~---~~~---------------------~~----~~~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKS---QYF---------------------SP----AVLEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHh---hhh---------------------hH----HHHhh
Confidence 45789999999999999999998 44333445566655311 000 00 11111
Q ss_pred hcCCceEEEEccCCC--ChhhHH-HHHhhcCCC-CCCcEEEEeeCCc
Q 045386 288 LTNKKYFIVRDDVFN--DSDIWD-DLEEVLPDK-QNGSRVLILVTDP 330 (706)
Q Consensus 288 L~~kr~LlVlDdvw~--~~~~~~-~l~~~l~~~-~~gs~IivTTR~~ 330 (706)
+. +.-+||+||+|. ....|+ .+...+... ..|+.+||+|.+.
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 22 234899999997 245565 344444422 3466676666554
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00028 Score=79.03 Aligned_cols=141 Identities=13% Similarity=0.115 Sum_probs=77.8
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 261 (706)
..+.+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+. +. |.-++... +++.=...+.|..
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~--Ln----C~~~~~~~-pCg~C~sC~~I~~ 83 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKC--LN----CETGVTST-PCEVCATCKAVNE 83 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hC----CCcCCCCC-CCccCHHHHHHhc
Confidence 344459999999999999997653 2467789999999999999988772 21 11111100 0000000001100
Q ss_pred hcCCCCCCccccCC-CHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 262 SLMPPSRARVIIGE-DYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 262 ~l~~~~~~~~~~~~-~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
.-....-....... ..+++.+.+... ..+++-++|+|+|.. ....++.+...+.....+.++|++|.+.
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 00000000000001 233322222111 235666899999987 4567778888777666677888888665
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00055 Score=73.58 Aligned_cols=140 Identities=13% Similarity=0.049 Sum_probs=74.9
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 261 (706)
..+.+++|-+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+.-.-...... .+...-....++..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~ 84 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEK 84 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhc
Confidence 344459999999999998887653 3456789999999999999999873211111100 00000000011100
Q ss_pred hcCCCCCCccccCC-CHHHHHHHHHHHh-----cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 262 SLMPPSRARVIIGE-DYHLKKSILRDYL-----TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 262 ~l~~~~~~~~~~~~-~~~~~~~~l~~~L-----~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
.............. ..+++.+ +.+.+ .+++-++|+|++.. ....++.+...+.......++|++|.+.
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred CCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 00000000000000 2222221 11121 24556899999987 4556778887777666677788777543
No 74
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.63 E-value=0.00012 Score=78.77 Aligned_cols=118 Identities=13% Similarity=0.115 Sum_probs=77.4
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPP 266 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~ 266 (706)
+++.+...+.++..|.. .+.|.++|++|+|||++|+.+++.......|+.+.||++++.++..++...+. ..
T Consensus 177 ~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r----P~ 248 (459)
T PRK11331 177 LFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR----PN 248 (459)
T ss_pred ccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----CC
Confidence 88889999999999875 34788899999999999999998544455788899999999988776553221 11
Q ss_pred CCCccccCCCHHHHHHHHHHHhc--CCceEEEEccCCC-Ch-hhHHHHHhhcC
Q 045386 267 SRARVIIGEDYHLKKSILRDYLT--NKKYFIVRDDVFN-DS-DIWDDLEEVLP 315 (706)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~-~~-~~~~~l~~~l~ 315 (706)
.. +..-...-..+.+...-. ++++.||+|++.. +. ..+.++...+.
T Consensus 249 ~v---gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 249 GV---GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred CC---CeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 00 000011112222223222 4789999999977 32 23555555444
No 75
>PLN03025 replication factor C subunit; Provisional
Probab=97.63 E-value=0.00055 Score=72.27 Aligned_cols=128 Identities=11% Similarity=0.088 Sum_probs=70.4
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCc-cccCCc-ceEEEecCCCCHHHHHHH
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHV-KFYFDC-LAWVRVSIGYYFGKILDD 258 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~-~~wv~vs~~~~~~~i~~~ 258 (706)
+..+.+++|.++.++.|.+++..+. ..-+-++|.+|+||||+|+.+.+ +. ...|.. .+-+..+...... ..++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~-~vr~ 83 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGID-VVRN 83 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHH-HHHH
Confidence 3344458999888888887776543 44567999999999999999987 33 222221 1111112211111 1122
Q ss_pred HHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 259 IINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
+++.+..... ..-.++.-++++|++.. .......+...+......+++|++|...
T Consensus 84 ~i~~~~~~~~-----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~ 139 (319)
T PLN03025 84 KIKMFAQKKV-----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTS 139 (319)
T ss_pred HHHHHHhccc-----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCc
Confidence 2111110000 00024566899999987 3445555655554444567777776443
No 76
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=1.3e-06 Score=95.56 Aligned_cols=123 Identities=21% Similarity=0.183 Sum_probs=61.8
Q ss_pred cccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch-hhccccccceeeecCc
Q 045386 529 HLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFGSI 607 (706)
Q Consensus 529 ~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~~~ 607 (706)
.|.+.++++|.+..+-.++.-+++|+.|||++|+++..- .+..|++|.+|||++|.+..+|. +...+. |..|.+.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 344455555555544455555555556666655555444 45555555556665555555554 222222 555555222
Q ss_pred --cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 608 --TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 608 --~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
.--.++. +|++|+.|++..+-.........+..|..|+.|.+.+|.
T Consensus 243 ~l~tL~gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 243 ALTTLRGIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHHhhhhHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 2223455 555666665544433222234445555566666666554
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=4.6e-06 Score=82.50 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=34.7
Q ss_pred ccEEEecCCCCC--cCCccccccccCcEEEcccCCcc-ccChhhcCCCCCcEEEccCC-CCCccc--hhhccccccceee
Q 045386 530 LRVLNFGSAVLD--QFPPGLENLFLLKYLKLNIPSLK-RLPSLLCTLLNLETLEMPSS-YIDQSP--EDIWMMQKLMHLN 603 (706)
Q Consensus 530 L~~L~L~~~~l~--~lp~~~~~L~~Lr~L~Ls~~~l~-~lP~~i~~L~~L~~L~L~~~-~~~~lP--~~l~~L~~L~~L~ 603 (706)
|+.|||+...++ .+..-+..+.+|+.|.|.|+.+. .+-..|.+-.+|+.|+|+.| .+++.. --+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 455555555544 23333344555555555555443 33334444455555555555 333221 1234455555555
Q ss_pred e
Q 045386 604 F 604 (706)
Q Consensus 604 l 604 (706)
+
T Consensus 267 l 267 (419)
T KOG2120|consen 267 L 267 (419)
T ss_pred c
Confidence 5
No 78
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.58 E-value=3.3e-05 Score=78.35 Aligned_cols=180 Identities=16% Similarity=0.093 Sum_probs=82.2
Q ss_pred ccCcccccEEEecCCCCC-cCC----ccccccccCcEEEcccCCcccc--------------ChhhcCCCCCcEEEccCC
Q 045386 524 CKKFKHLRVLNFGSAVLD-QFP----PGLENLFLLKYLKLNIPSLKRL--------------PSLLCTLLNLETLEMPSS 584 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~-~lp----~~~~~L~~Lr~L~Ls~~~l~~l--------------P~~i~~L~~L~~L~L~~~ 584 (706)
+.+++.|++||||.|-+. .-+ .-+..++.|+.|.|.+|.+... -+.+.+-+.|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 344556666666666543 222 2234455566666666655421 112233345666666666
Q ss_pred CCCccch-----hhccccccceeee-cCccCCcc-------hhcCCccCcccccccccccCC---CCchhcCCCCCCCeE
Q 045386 585 YIDQSPE-----DIWMMQKLMHLNF-GSITLPAP-------PKNYSSSLKNLIFISALNPSS---CTPDILDRLPSVRTL 648 (706)
Q Consensus 585 ~~~~lP~-----~l~~L~~L~~L~l-~~~~lp~~-------i~~~l~~L~~L~~~~~~~~~~---~~~~~l~~L~~L~~L 648 (706)
.+..-|. .+...+.|+.+.+ ....-|++ +. .+++|+.|++.++..... .....+..+++|+.|
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 5444332 3344455565555 11111222 34 455566666554433111 012234555566666
Q ss_pred EEEccC--CcCccchHHhcC-CCCCCcEEEEeeCCCC--Ccccc--CCcccccccceEEecccC
Q 045386 649 RISGDL--SYYQSGVSKSLC-ELHKLECLKLVNESKP--SWMVL--SEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 649 ~l~~~~--~~~~~~~~~~l~-~l~~L~~L~L~~~~~~--~l~~l--~~~~~p~~L~~L~L~~n~ 705 (706)
+++.|- ..-...+...+. ..++|+.|.+.+|... ....+ .... -|.|..|+|++|+
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNR 309 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCccc
Confidence 665553 111112223333 2356666666665430 00000 0011 2567777777775
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00052 Score=79.35 Aligned_cols=141 Identities=13% Similarity=0.032 Sum_probs=76.3
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCcccc--CCc-ceEEEecCCCCHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFY--FDC-LAWVRVSIGYYFGKILDD 258 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~-~~wv~vs~~~~~~~i~~~ 258 (706)
..+.+++|-+..+..|.+++..+. -...+-++|..|+||||+|+.+.+. +... ... -+-.|-+ +..+......
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~--Lnce~~~~~~pCg~C~s-C~~i~~g~~~ 88 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG--LNCEQGVTATPCGVCSS-CVEIAQGRFV 88 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh--ccCccCCCCCCCCCchH-HHHHhcCCCc
Confidence 344559999999999999887653 2345689999999999999999973 3211 000 0000000 0000000000
Q ss_pred HHHhcCCCCCCccccCC-CHHHHHHHHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 259 IINSLMPPSRARVIIGE-DYHLKKSILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 259 il~~l~~~~~~~~~~~~-~~~~~~~~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
.+..+..... ... +..++.+.+... ..+++-++|+|++.. ....++.+...+.......++|++|.+.
T Consensus 89 DviEidAas~----~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 89 DLIEVDAASR----TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred eEEEeccccc----cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 0000000000 000 222223222211 246677999999977 5677888888777655667777776554
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.54 E-value=0.00034 Score=80.97 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=65.1
Q ss_pred CCccccccccccHH---HHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC-CHHHHHH
Q 045386 182 QHWLDVSEFERGRE---ELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY-YFGKILD 257 (706)
Q Consensus 182 ~~~~~~vGr~~~~~---~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~ 257 (706)
..+.+++|.+..+. .+.+.+..+ ....+-++|++|+||||||+.+++ .....| +.++... .+.
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f-----~~lna~~~~i~---- 91 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHF-----SSLNAVLAGVK---- 91 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcc-----eeehhhhhhhH----
Confidence 33444899887764 455555443 356678999999999999999998 444444 1111110 000
Q ss_pred HHHHhcCCCCCCccccCCCHHHHHHHHHHHh--cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEee
Q 045386 258 DIINSLMPPSRARVIIGEDYHLKKSILRDYL--TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILV 327 (706)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTT 327 (706)
+..+......+.+ .+++.+||+||++. ....++.+...+. .|+.+++++
T Consensus 92 ------------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~a 143 (725)
T PRK13341 92 ------------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGA 143 (725)
T ss_pred ------------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEe
Confidence 1112222222222 24677999999976 3556666665443 355566543
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00021 Score=79.52 Aligned_cols=139 Identities=12% Similarity=-0.020 Sum_probs=78.5
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 261 (706)
..+.+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.-.-...+...+|.|.+... +.......+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 334449999998888888887653 33567899999999999999998742212223334444432210 0000000000
Q ss_pred hcCCCCCCccccCC-CHHH---HHHHHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 262 SLMPPSRARVIIGE-DYHL---KKSILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 262 ~l~~~~~~~~~~~~-~~~~---~~~~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
.+... .. ..++ +...+... ..+++-++|+|+++. ....++.+...+......+.+|++|..
T Consensus 89 el~~~-------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 89 EIDAA-------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred Eeccc-------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 11110 01 2222 22222221 234667899999987 456788888888765556666666643
No 82
>PRK04195 replication factor C large subunit; Provisional
Probab=97.52 E-value=0.00067 Score=75.83 Aligned_cols=121 Identities=13% Similarity=0.183 Sum_probs=71.9
Q ss_pred CccccccccccHHHHHHHHhcC--CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHH
Q 045386 183 HWLDVSEFERGREELFDLLIEG--PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDII 260 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 260 (706)
.+.+++|.++.++++.+|+..- ....+.+-|+|.+|+||||+|+.++++ .. |+ .+-+..|...+. .....++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccH-HHHHHHH
Confidence 3444999999999999998642 123678999999999999999999994 32 22 222233332222 2223332
Q ss_pred HhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-C----hhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 261 NSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-D----SDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~----~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
........ ....++-+||+|++.. . ...+..+...+.. .+..||+|+.+
T Consensus 86 ~~~~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~ 139 (482)
T PRK04195 86 GEAATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAND 139 (482)
T ss_pred HHhhccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccC
Confidence 22211100 0113677999999976 1 1345666655542 23456666644
No 83
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.52 E-value=0.0005 Score=70.92 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=80.1
Q ss_pred cccccccHHHHHHHHhcCCC-CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCC
Q 045386 187 VSEFERGREELFDLLIEGPS-GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMP 265 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~ 265 (706)
+.+|+..+..+..++.+.+. -.+.|-|.|..|.|||.+.+++++.. ..+ -+|+++-..|+.+-++..|+.+.+.
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~~---~vw~n~~ecft~~~lle~IL~~~~~ 82 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NLE---NVWLNCVECFTYAILLEKILNKSQL 82 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CCc---ceeeehHHhccHHHHHHHHHHHhcc
Confidence 78899999999999987765 34566899999999999999999943 333 4799999999999999999999963
Q ss_pred CCCCccccC--C-CHHHHHHHHHH--Hhc--CCceEEEEccCCC
Q 045386 266 PSRARVIIG--E-DYHLKKSILRD--YLT--NKKYFIVRDDVFN 302 (706)
Q Consensus 266 ~~~~~~~~~--~-~~~~~~~~l~~--~L~--~kr~LlVlDdvw~ 302 (706)
...++.... . +..+....+.+ ... ++.++||||++..
T Consensus 83 ~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 83 ADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence 322111001 0 22233333333 122 4589999999876
No 84
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=1e-05 Score=71.16 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=44.5
Q ss_pred ccEEEecCCCCCcCC---ccccccccCcEEEcccCCccccChhhc-CCCCCcEEEccCCCCCccchhhccccccceeee
Q 045386 530 LRVLNFGSAVLDQFP---PGLENLFLLKYLKLNIPSLKRLPSLLC-TLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNF 604 (706)
Q Consensus 530 L~~L~L~~~~l~~lp---~~~~~L~~Lr~L~Ls~~~l~~lP~~i~-~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l 604 (706)
+..++|++|++-.++ ..+....+|+..+|++|.++.+|+.+. +.+.+++|+|.+|.+.++|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 445566666544333 233445556666666666666666653 334666666666666666666666666666666
No 85
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.49 E-value=0.00027 Score=70.65 Aligned_cols=50 Identities=10% Similarity=0.006 Sum_probs=33.9
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEE
Q 045386 192 RGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVR 245 (706)
Q Consensus 192 ~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 245 (706)
..++.+.+++... ....|.|+|..|+|||+||+.+++ +........++++
T Consensus 24 ~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~ 73 (226)
T TIGR03420 24 ELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLP 73 (226)
T ss_pred HHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEe
Confidence 3556666665432 367889999999999999999998 3333333344553
No 86
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.47 E-value=0.001 Score=70.37 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=72.7
Q ss_pred CCCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc-cCCcceEEEec--CCCCHHHHH
Q 045386 180 KGQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF-YFDCLAWVRVS--IGYYFGKIL 256 (706)
Q Consensus 180 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs--~~~~~~~i~ 256 (706)
.+..+.+++|+++.++.+.+++.... ...+-++|..|+||||+|+.+.+. ... .+. ..++.+. ...... ..
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~--l~~~~~~-~~~i~~~~~~~~~~~-~~ 85 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE--LYGEDWR-ENFLELNASDERGID-VI 85 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HcCCccc-cceEEeccccccchH-HH
Confidence 34444559999999999999887643 445799999999999999999883 211 121 1223221 111111 11
Q ss_pred HHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 257 DDIINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
.+.+.++..... .....+-+|++|++.. ....+..+...+......+.+|+++..
T Consensus 86 ~~~i~~~~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 86 RNKIKEFARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred HHHHHHHHhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 111111110000 0012356899999876 344566677766655556777777643
No 87
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.47 E-value=0.00059 Score=72.06 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=72.7
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHH
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDII 260 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 260 (706)
+..+.+++|.+..++.+.+++..+. -..++-++|.+|+||||+|+.+++ ..... ...+..+. ..... .++.+
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~--~~~~~---~~~i~~~~-~~~~~-i~~~l 88 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCN--EVGAE---VLFVNGSD-CRIDF-VRNRL 88 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCcc---ceEeccCc-ccHHH-HHHHH
Confidence 3444559999999999999987543 356777799999999999999988 33222 22333332 11111 11111
Q ss_pred HhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCCC--hhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 261 NSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFND--SDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
..+... . -+.+.+-+||+||+..- ......+...+.....++++|+||...
T Consensus 89 ~~~~~~-----------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 89 TRFAST-----------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHHHHh-----------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 111000 0 01134557899999751 233444555555555677888888654
No 88
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.0004 Score=72.25 Aligned_cols=92 Identities=24% Similarity=0.249 Sum_probs=57.9
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH-
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR- 285 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~- 285 (706)
.+.-.-.||++|+||||||+.+.. .....|. .+|-..+-.+ +..++.+.-+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvk---------------------dlr~i~e~a~~ 98 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVK---------------------DLREIIEEARK 98 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHH---------------------HHHHHHHHHHH
Confidence 466777899999999999999998 5665553 3333222111 2222333332
Q ss_pred HHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 286 DYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
....|+|.+|++|.|.. +..+.+-+ ||.-.+|.-|+|-+..
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATT 140 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATT 140 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccC
Confidence 22348999999999977 45555544 4444677777774433
No 89
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.43 E-value=0.00015 Score=75.91 Aligned_cols=251 Identities=14% Similarity=0.040 Sum_probs=152.7
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCc-ceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDC-LAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
..+-+.++|.|||||||++-.+.. +...|.. +.++....-.|...+.-.....++.... .-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 478999999999999999998876 6777865 5555555555666666666666766543 3344555677
Q ss_pred HHhcCCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCccee--------------------------------
Q 045386 286 DYLTNKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPILL-------------------------------- 333 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~-------------------------------- 333 (706)
....++|.++|+||-.+=.+.-..+...+-.+...-.|+.|+|.....
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 778889999999996440111122223344455566788888876555
Q ss_pred ecccc-------ccC--CCccceeeecccccccCCH--------HHHHHHHHHhCcCcccCccchhhhhhccccc-cccc
Q 045386 334 TFFEL-------EHG--GIIPLYSVPVGGPLIRLKH--------EAWQFFILHYGSAPLVNYMDEKVVLTLLSRI-CSVL 395 (706)
Q Consensus 334 af~~~-------~c~--~glPLai~~~g~~L~~~~~--------~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~i-~sy~ 395 (706)
.|... .|. .|.|++|...++..+.-.. +.|..+.+. .. +..- ........+ +||.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~--~r-~a~~----~~qtl~asl~ws~~ 235 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG--AR-LAVL----RQQTLRASLDWSYA 235 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc--cc-cchh----HHHhccchhhhhhH
Confidence 11111 132 8999999988877766552 223222221 00 1111 223444556 9999
Q ss_pred CCCcchHHHhhhhccCCCCcEEchHhHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCceeeeecCCCCCeeEEEcChhHHH
Q 045386 396 ELPFHLKVCCLYLCVFRPGIEMSTRQLCQLWIAEGFVPYNGEETAEHYLKELIHRGFIQVSKRRAGGTIKACYVPSFVYT 475 (706)
Q Consensus 396 ~L~~~lk~cfl~~s~Fp~~~~i~~~~li~~W~a~g~i~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~ 475 (706)
-|....+--|--++.|...+... ...|.+-|-......-....-+-.+++.+++....... ...|+.-+-+|.
T Consensus 236 lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~---~a~~Rl~eT~r~ 308 (414)
T COG3903 236 LLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLG---RARYRLLETGRR 308 (414)
T ss_pred hhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhh---HHHHHHHHHHHH
Confidence 99999999999999998887654 23444444332112334445566777787775433211 123455555566
Q ss_pred HHHHhh
Q 045386 476 SLGLMA 481 (706)
Q Consensus 476 ~~~~~~ 481 (706)
|+..+-
T Consensus 309 YalaeL 314 (414)
T COG3903 309 YALAEL 314 (414)
T ss_pred HHHHHH
Confidence 655443
No 90
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0015 Score=72.43 Aligned_cols=145 Identities=12% Similarity=0.026 Sum_probs=77.5
Q ss_pred CCCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCc-ceEEEecCCCCHHHHHHH
Q 045386 180 KGQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDC-LAWVRVSIGYYFGKILDD 258 (706)
Q Consensus 180 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~ 258 (706)
.+..+.+++|-+..+..+.+.+..+. -..-+-++|..|+||||+|+.+++.---...+.. -.+.......+ ...
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~ 90 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CIS 90 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHH
Confidence 33445559999999998888776543 2457889999999999999999873111111000 00000000000 000
Q ss_pred HHHhcCCCCCCccccCC-CHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 259 IINSLMPPSRARVIIGE-DYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 259 il~~l~~~~~~~~~~~~-~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
|................ ..+++.+.+... +.+++-++|+|+++. ....|+.+...+......+.+|++|..
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 10000000000000011 333333333222 245677899999988 567788898888766667777665533
No 91
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=3.5e-05 Score=67.87 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=70.6
Q ss_pred cCcccccEEEecCCCCCcCCccccc-cccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 525 KKFKHLRVLNFGSAVLDQFPPGLEN-LFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~lp~~~~~-L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
.....|...+|++|.+.++|+.|.. .+.++.|+|++|.|..+|..+..++.|+.|+++.|.+...|.-+..|.+|-+|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 4456678889999999999988765 568999999999999999999999999999999999999999888888999888
Q ss_pred e
Q 045386 604 F 604 (706)
Q Consensus 604 l 604 (706)
.
T Consensus 130 s 130 (177)
T KOG4579|consen 130 S 130 (177)
T ss_pred C
Confidence 8
No 92
>PRK08118 topology modulation protein; Reviewed
Probab=97.39 E-value=8.7e-05 Score=70.28 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=28.6
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCcc-ccCCcceE
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVK-FYFDCLAW 243 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 243 (706)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999955444 45777776
No 93
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0013 Score=73.48 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=76.3
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCC------c--ceEEEecCCCCH
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFD------C--LAWVRVSIGYYF 252 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~------~--~~wv~vs~~~~~ 252 (706)
+..+.++||-+..+..|.+++..+. -...+-++|..|+||||+|+.+.+.---...+. | +-.+.-+..+|+
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 3344559999999999999997653 234578999999999999988887211111110 0 000000000010
Q ss_pred HHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEe
Q 045386 253 GKILDDIINSLMPPSRARVIIGE-DYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLIL 326 (706)
Q Consensus 253 ~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivT 326 (706)
.++ .. ... ..+++.+.+... ..++.-++|+|+|.. .....+.+...+......+++|++
T Consensus 91 ~ei--------da-------as~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 91 FEV--------DA-------ASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred EEE--------cc-------cccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 000 00 001 233332222111 135566889999987 466777788877766667778877
Q ss_pred eCCc
Q 045386 327 VTDP 330 (706)
Q Consensus 327 TR~~ 330 (706)
|.+.
T Consensus 156 ttd~ 159 (509)
T PRK14958 156 TTDH 159 (509)
T ss_pred ECCh
Confidence 7544
No 94
>PRK08727 hypothetical protein; Validated
Probab=97.38 E-value=0.00059 Score=68.47 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=27.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEe
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRV 246 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 246 (706)
...+.|+|..|+|||+|++.+++ +.......+.|+++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~ 77 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPL 77 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeH
Confidence 45699999999999999999988 44444335566653
No 95
>PRK08116 hypothetical protein; Validated
Probab=97.38 E-value=0.00045 Score=70.71 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=60.4
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHh
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYL 288 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 288 (706)
.-+.++|..|+|||.||..+++ .+...-..+++++ ..+++..|.......... +..+. .+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~~------~~~~~----~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSGKE------DENEI----IRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhccccc------cHHHH----HHHh
Confidence 3588999999999999999999 5544433455553 455666665554332110 22222 3334
Q ss_pred cCCceEEEEccCCC-ChhhHHH--HHhhcCC-CCCCcEEEEeeCCc
Q 045386 289 TNKKYFIVRDDVFN-DSDIWDD--LEEVLPD-KQNGSRVLILVTDP 330 (706)
Q Consensus 289 ~~kr~LlVlDdvw~-~~~~~~~--l~~~l~~-~~~gs~IivTTR~~ 330 (706)
.+-. ||||||+.. ...+|.. +...+.. -.+|..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4333 899999954 1344433 3333332 13456788888543
No 96
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.38 E-value=0.00038 Score=74.11 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=84.1
Q ss_pred ccccccCcEEEcccCCccccChhhcCCCCCcEEEccCC-CCCccchhhccccccceeeecCc----cCCcchhcCCccCc
Q 045386 547 LENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSS-YIDQSPEDIWMMQKLMHLNFGSI----TLPAPPKNYSSSLK 621 (706)
Q Consensus 547 ~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~-~~~~lP~~l~~L~~L~~L~l~~~----~lp~~i~~~l~~L~ 621 (706)
+..+.++++|++++|.++.+|. + -.+|+.|.+++| .+..+|..+ .++|++|.+... .+|.+ |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s-------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES-------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc-------cc
Confidence 4457899999999999999982 2 236999999998 778888755 358999999332 34443 44
Q ss_pred ccccccccccCCCCchhcCCC-CCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCCcccccccceEE
Q 045386 622 NLIFISALNPSSCTPDILDRL-PSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSEYQFPPSLIQLS 700 (706)
Q Consensus 622 ~L~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~ 700 (706)
+|.+... ....++.| ++|+.|.+..+.......+|..+ -++|+.|++++|.. ..+ +..+|.+|+.|+
T Consensus 116 ~L~L~~n------~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~---i~L-P~~LP~SLk~L~ 183 (426)
T PRK15386 116 SLEIKGS------ATDSIKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSN---IIL-PEKLPESLQSIT 183 (426)
T ss_pred eEEeCCC------CCcccccCcchHhheecccccccccccccccc--CCcccEEEecCCCc---ccC-cccccccCcEEE
Confidence 4443211 11223444 35777777543211111122111 16899999998652 122 234678999999
Q ss_pred eccc
Q 045386 701 LSIV 704 (706)
Q Consensus 701 L~~n 704 (706)
++.|
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 9875
No 97
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.36 E-value=4.7e-05 Score=77.30 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=64.1
Q ss_pred cccccCcEEEcccCCcc-c----cChhhcCCCCCcEEEccCCCCCccch--------------hhccccccceeeecCc-
Q 045386 548 ENLFLLKYLKLNIPSLK-R----LPSLLCTLLNLETLEMPSSYIDQSPE--------------DIWMMQKLMHLNFGSI- 607 (706)
Q Consensus 548 ~~L~~Lr~L~Ls~~~l~-~----lP~~i~~L~~L~~L~L~~~~~~~lP~--------------~l~~L~~L~~L~l~~~- 607 (706)
..+++|++|+||.|-+. . +-.-+.++..|+.|.|.+|.++..-. -+..-++||.+.....
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 34456666666666553 1 22234556666666666665443211 1233456666665111
Q ss_pred -------cCCcchhcCCccCcccccccccccCCC---CchhcCCCCCCCeEEEEccCC--cCccchHHhcCCCCCCcEEE
Q 045386 608 -------TLPAPPKNYSSSLKNLIFISALNPSSC---TPDILDRLPSVRTLRISGDLS--YYQSGVSKSLCELHKLECLK 675 (706)
Q Consensus 608 -------~lp~~i~~~l~~L~~L~~~~~~~~~~~---~~~~l~~L~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~ 675 (706)
.+-..+. ..+.|+.+.+..+...... ....+..+++|+.|++..|.- .-...+...++.+++|+.|+
T Consensus 169 len~ga~~~A~~~~-~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 169 LENGGATALAEAFQ-SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred cccccHHHHHHHHH-hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 1111233 3444555555444332110 123355666666666666641 11223445566666666666
Q ss_pred EeeCC
Q 045386 676 LVNES 680 (706)
Q Consensus 676 L~~~~ 680 (706)
++.|.
T Consensus 248 l~dcl 252 (382)
T KOG1909|consen 248 LGDCL 252 (382)
T ss_pred ccccc
Confidence 66654
No 98
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0015 Score=72.05 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=38.0
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
..+.+++|.+..+..+.+.+..+. -...+-++|.+|+||||+|+.+.+.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344459999888888877776543 2356789999999999999999873
No 99
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0015 Score=73.18 Aligned_cols=143 Identities=10% Similarity=0.031 Sum_probs=76.5
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc---cCCcceEEEecCCCCHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF---YFDCLAWVRVSIGYYFGKILDD 258 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~i~~~ 258 (706)
..+.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.---.. ..... +..+..-...+.
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~~ 86 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACTE 86 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHHH
Confidence 344459999999999999987654 235678899999999999988876211000 00000 000000000001
Q ss_pred HHHhcCCCCCCccccCC-CHHHHHHHHHHHh----cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 259 IINSLMPPSRARVIIGE-DYHLKKSILRDYL----TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 259 il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L----~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
|...-....-....... ..+++.+.+.... .++.-++|+|++.. ....++.+...+..-..+.++|++|.+.
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 10000000000000001 3333333333221 35666899999987 5677888888877655667766666554
No 100
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0017 Score=73.63 Aligned_cols=144 Identities=10% Similarity=0.060 Sum_probs=75.2
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc--cCCcceEEEecCCCCHHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF--YFDCLAWVRVSIGYYFGKILDDI 259 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~i~~~i 259 (706)
..+.+++|-+..+..|.+++..+. -...+-++|..|+||||+|+.+.+.---.. ....... .+++.-..-+.|
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 344559998888888888887653 346678999999999999998854210000 0000000 000000111111
Q ss_pred HHhcCCCCCCccccCC-CHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 260 INSLMPPSRARVIIGE-DYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~-~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
-..-....-....... ..+++.+.+... ..++.-++|+|+|.. ....++.+...+..-....++|++|.+.
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 0000000000000011 333333322221 123455889999987 5677888888887666677777777554
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0014 Score=72.13 Aligned_cols=141 Identities=14% Similarity=0.077 Sum_probs=84.3
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC------CCcc-------------ccCCcce
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN------NHVK-------------FYFDCLA 242 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~------~~~~-------------~~F~~~~ 242 (706)
..+.|++|-+..++.+.+.+..+. -...+-++|..|+||||+|+.+..- +... ..+..++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 445559999988888888776553 2347889999999999999888751 0000 0011122
Q ss_pred EEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCC
Q 045386 243 WVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDK 317 (706)
Q Consensus 243 wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~ 317 (706)
.+..+... +.+++.+.+... ..+++-++|+|++.. .....+.+...+...
T Consensus 89 eidaas~~-------------------------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP 143 (491)
T PRK14964 89 EIDAASNT-------------------------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP 143 (491)
T ss_pred EEecccCC-------------------------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC
Confidence 22222111 222222222111 134566899999976 456778888888776
Q ss_pred CCCcEEEEeeCCcceeeccccccCCCccceeeecccccccCC
Q 045386 318 QNGSRVLILVTDPILLTFFELEHGGIIPLYSVPVGGPLIRLK 359 (706)
Q Consensus 318 ~~gs~IivTTR~~~v~af~~~~c~~glPLai~~~g~~L~~~~ 359 (706)
...+++|++|... ..+|-+|..-+..+..++
T Consensus 144 p~~v~fIlatte~-----------~Kl~~tI~SRc~~~~f~~ 174 (491)
T PRK14964 144 APHVKFILATTEV-----------KKIPVTIISRCQRFDLQK 174 (491)
T ss_pred CCCeEEEEEeCCh-----------HHHHHHHHHhheeeeccc
Confidence 6778888777443 455555555555555544
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0024 Score=71.82 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=73.5
Q ss_pred CccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCcccc-------------------CCcceE
Q 045386 183 HWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFY-------------------FDCLAW 243 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 243 (706)
.+.+++|-+..+..+.+++..+. -...+-++|..|+||||+|+.+...---... |...++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 44459999999999999887653 2345678999999999999988762110000 111111
Q ss_pred EEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCC
Q 045386 244 VRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQ 318 (706)
Q Consensus 244 v~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~ 318 (706)
+..+... ..+++.+.+... ..+++-++|+|++.. .....+.+...+....
T Consensus 93 i~~~~~~-------------------------~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp 147 (527)
T PRK14969 93 VDAASNT-------------------------QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP 147 (527)
T ss_pred eeccccC-------------------------CHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC
Confidence 1111110 222222222111 135667899999987 4556777777777655
Q ss_pred CCcEEEEeeCCc
Q 045386 319 NGSRVLILVTDP 330 (706)
Q Consensus 319 ~gs~IivTTR~~ 330 (706)
..+.+|++|.+.
T Consensus 148 ~~~~fIL~t~d~ 159 (527)
T PRK14969 148 EHVKFILATTDP 159 (527)
T ss_pred CCEEEEEEeCCh
Confidence 567777777554
No 103
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.30 E-value=0.00073 Score=67.05 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=30.3
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEe
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRV 246 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 246 (706)
-.++|+|..|.|||||+..+.. .....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3678999999999999999998 68888977777644
No 104
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.28 E-value=0.0017 Score=58.80 Aligned_cols=86 Identities=12% Similarity=-0.043 Sum_probs=47.2
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHh
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYL 288 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 288 (706)
..+.|+|.+|+||||+++.+.. ........++++..+........... ........ ...........+.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK-----ASGSGELRLRLALALA 74 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH-hhhhhccC-----CCCCHHHHHHHHHHHH
Confidence 5789999999999999999998 44433333455544433222111111 00011110 0113333334444444
Q ss_pred cCCc-eEEEEccCCC
Q 045386 289 TNKK-YFIVRDDVFN 302 (706)
Q Consensus 289 ~~kr-~LlVlDdvw~ 302 (706)
...+ .+|++|++..
T Consensus 75 ~~~~~~viiiDei~~ 89 (148)
T smart00382 75 RKLKPDVLILDEITS 89 (148)
T ss_pred HhcCCCEEEEECCcc
Confidence 4444 8999999988
No 105
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.27 E-value=0.002 Score=73.19 Aligned_cols=137 Identities=14% Similarity=0.056 Sum_probs=76.2
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 261 (706)
..+.++||-+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+. +.-.. .+. +.++..-...+.|
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~----~~~-~~pCg~C~~C~~i-- 82 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKG--LNCET----GIT-ATPCGECDNCREI-- 82 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh--hhhcc----CCC-CCCCCCCHHHHHH--
Confidence 344559999999999988887653 2345688999999999999998873 21100 000 0000000111111
Q ss_pred hcCCCCCCcc----ccCC-CHHH---HHHHHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 262 SLMPPSRARV----IIGE-DYHL---KKSILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 262 ~l~~~~~~~~----~~~~-~~~~---~~~~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
....+... .... ..++ +.+.+... ..+++-++|+|++.. .....+.+...+.......++|++|.+.
T Consensus 83 --~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 83 --EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred --HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 11000000 0000 2223 22222221 245667899999987 4677888877777665667777766654
No 106
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.25 E-value=0.0011 Score=71.51 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=39.3
Q ss_pred cccccccHHHHHHHHhcC--C---------CCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 187 VSEFERGREELFDLLIEG--P---------SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~--~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
+.|+++.+++|.+.+... . ...+-+.++|.+|+|||++|+.+++ +....|
T Consensus 124 i~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred hCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 999999999998877421 1 2345689999999999999999998 444443
No 107
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0019 Score=72.43 Aligned_cols=168 Identities=13% Similarity=0.068 Sum_probs=86.6
Q ss_pred CCCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHH
Q 045386 180 KGQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDI 259 (706)
Q Consensus 180 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 259 (706)
.+..+.+++|.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+. + .|.-|.... .++.-...+.+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~--L----~C~~~~~~~-~Cg~C~sCr~i 82 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKA--I----NCLNPKDGD-CCNSCSVCESI 82 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH--h----cCCCCCCCC-CCcccHHHHHH
Confidence 33445559999999999999886653 2356889999999999999998772 2 111122111 11111111111
Q ss_pred HHhcCCCCCCccccCC-CHHHH---HHHHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCccee
Q 045386 260 INSLMPPSRARVIIGE-DYHLK---KSILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDPILL 333 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~-~~~~~---~~~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~ 333 (706)
................ ..+++ ...+... ..+++-++|+|++.. ....+..+...+.....++.+|++|...
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~--- 159 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF--- 159 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh---
Confidence 1110000000000001 22222 2222211 123444699999876 4567788888777655566666666433
Q ss_pred eccccccCCCccceeeecccccccCC--HHHHHHH
Q 045386 334 TFFELEHGGIIPLYSVPVGGPLIRLK--HEAWQFF 366 (706)
Q Consensus 334 af~~~~c~~glPLai~~~g~~L~~~~--~~~w~~~ 366 (706)
..+|-++..-+..+...+ ..++...
T Consensus 160 --------~KLl~TI~SRcq~ieF~~Ls~~eL~~~ 186 (605)
T PRK05896 160 --------QKIPLTIISRCQRYNFKKLNNSELQEL 186 (605)
T ss_pred --------HhhhHHHHhhhhhcccCCCCHHHHHHH
Confidence 444444444444444444 4444433
No 108
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.24 E-value=6.5e-06 Score=90.38 Aligned_cols=122 Identities=21% Similarity=0.195 Sum_probs=84.7
Q ss_pred CcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeee--cC-ccCCcchhcCCccCccccccccc
Q 045386 553 LKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNF--GS-ITLPAPPKNYSSSLKNLIFISAL 629 (706)
Q Consensus 553 Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l--~~-~~lp~~i~~~l~~L~~L~~~~~~ 629 (706)
|..-+.++|.+..+-.++.-++.|+.|||++|++.... .+..+++|+||++ |. ..+| .++..-..|+.|.+.++.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp-~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVP-QLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcccc-ccchhhhhheeeeecccH
Confidence 55667777888878888888999999999999888776 7889999999999 32 2445 222011237777765543
Q ss_pred ccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCC
Q 045386 630 NPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 630 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
. .....+.+|.+|+.|+++.|-...... ...+..+..|..|+|.||.
T Consensus 244 l---~tL~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 244 L---TTLRGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred H---HhhhhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCc
Confidence 3 246677888889999998874111111 1344556788888998854
No 109
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0024 Score=72.37 Aligned_cols=48 Identities=21% Similarity=0.181 Sum_probs=39.5
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+.+++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 344459999999999999987653 245688999999999999998877
No 110
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.0014 Score=59.12 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.3
Q ss_pred EEEEcCCCchhhHHHHHHHcC
Q 045386 211 IAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~ 231 (706)
|-|+|.+|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999993
No 111
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.19 E-value=0.0011 Score=67.83 Aligned_cols=98 Identities=21% Similarity=0.287 Sum_probs=63.3
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRD 286 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (706)
.+..+..||.+|+||||||+.+.+..+-.. ..||..|-.-.-..-.++|+++-... .
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~-------------------~ 217 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE-------------------K 217 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH-------------------H
Confidence 477788999999999999999999655444 45777776543333344444432211 2
Q ss_pred HhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEE--eeCCc
Q 045386 287 YLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLI--LVTDP 330 (706)
Q Consensus 287 ~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~ 330 (706)
.+.++|-.|++|.|.. ...+.+ ..||.-.+|+-++| ||-+.
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENP 261 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCC
Confidence 3456888999999865 233322 24566677887666 45554
No 112
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.17 E-value=0.006 Score=59.03 Aligned_cols=41 Identities=10% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 290 NKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 290 ~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
+.+-++|+|++.. ....++.+...+......+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 4566899999876 4667888888887666667777777654
No 113
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0032 Score=68.55 Aligned_cols=146 Identities=11% Similarity=0.030 Sum_probs=75.5
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEE-ecCCCCHHHHHHHH
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVR-VSIGYYFGKILDDI 259 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i 259 (706)
+..+.+++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+.-.-...++...|.. +..+...=..-+.+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 3344459999988888888887553 234577899999999999998876211111111011110 00000000011111
Q ss_pred HHhcCCCCCCccccCC-CHHHHHHHHHHHh-----cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeC
Q 045386 260 INSLMPPSRARVIIGE-DYHLKKSILRDYL-----TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVT 328 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~-~~~~~~~~l~~~L-----~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR 328 (706)
................ ..+++.+. .+.+ .+++-++|+|++.. ....++.+...+......+.+|++|.
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 1000000000000011 23344332 2222 34566889999876 35678888888876666777776663
No 114
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.16 E-value=0.00081 Score=65.37 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=36.9
Q ss_pred CCCccccccccccHHHHHHHHh---cCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 181 GQHWLDVSEFERGREELFDLLI---EGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
+..+.|+||.+.-++++.-++. ..+..+.-+-.||++|+||||||+.+.+ +....|
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 3345559999988888654443 2334578899999999999999999999 666555
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0055 Score=66.14 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=40.0
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+..+.+++|.+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444559999999999999987643 345888999999999999999877
No 116
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.13 E-value=0.0037 Score=67.19 Aligned_cols=49 Identities=20% Similarity=0.088 Sum_probs=39.2
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+..+.+++|.+..++.+.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444459999999999999887543 245678899999999999988875
No 117
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00014 Score=72.21 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=41.5
Q ss_pred cCcccccEEEecCCCCCc---CCccccccccCcEEEcccCCccccChhh-cCCCCCcEEEccCCC--CCccchhhccccc
Q 045386 525 KKFKHLRVLNFGSAVLDQ---FPPGLENLFLLKYLKLNIPSLKRLPSLL-CTLLNLETLEMPSSY--IDQSPEDIWMMQK 598 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~---lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i-~~L~~L~~L~L~~~~--~~~lP~~l~~L~~ 598 (706)
.....++.|||.+|.++. +-.-+.+|++|++|+|++|.+..--.+. -.+.+|++|-|.++. ...+...+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345566677777776652 2222345677777777776543211111 244566666666662 2333334444444
Q ss_pred cceeee
Q 045386 599 LMHLNF 604 (706)
Q Consensus 599 L~~L~l 604 (706)
++.|++
T Consensus 148 vtelHm 153 (418)
T KOG2982|consen 148 VTELHM 153 (418)
T ss_pred hhhhhh
Confidence 444433
No 118
>PRK05642 DNA replication initiation factor; Validated
Probab=97.09 E-value=0.0021 Score=64.46 Aligned_cols=92 Identities=16% Similarity=0.294 Sum_probs=53.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
...+.|+|..|+|||.|++.+++ +....-..++|++.. ++... ...+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~------~~~~~----------------------~~~~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLA------ELLDR----------------------GPELLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHH------HHHhh----------------------hHHHHHh
Confidence 46789999999999999999987 333222345666432 22111 0112222
Q ss_pred hcCCceEEEEccCCC--ChhhHHH-HHhhcCC-CCCCcEEEEeeCCc
Q 045386 288 LTNKKYFIVRDDVFN--DSDIWDD-LEEVLPD-KQNGSRVLILVTDP 330 (706)
Q Consensus 288 L~~kr~LlVlDdvw~--~~~~~~~-l~~~l~~-~~~gs~IivTTR~~ 330 (706)
+.+-. +||+||+.. ....|.. +...+.. ...|..||+|++..
T Consensus 95 ~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 95 LEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 22222 678999974 1345543 4444432 23467788888654
No 119
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.05 E-value=0.0019 Score=64.92 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=27.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEe
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRV 246 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 246 (706)
...+.|+|..|+|||+|++.+++ .....-..+.++++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEH
Confidence 45789999999999999999998 33333233556654
No 120
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00035 Score=80.44 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=56.4
Q ss_pred cCcccccEEEecCCCCC--cCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch--hhccccccc
Q 045386 525 KKFKHLRVLNFGSAVLD--QFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE--DIWMMQKLM 600 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~--~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~--~l~~L~~L~ 600 (706)
..+|.|+.|.+++-.+. ++..-..++++|++||+|+++++.+ ..++.|+|||+|-+++-.+..-+. .+.+|++|+
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 45677888888876654 3334455678888888888888777 577888888888776655554433 567788888
Q ss_pred eeee
Q 045386 601 HLNF 604 (706)
Q Consensus 601 ~L~l 604 (706)
+||+
T Consensus 224 vLDI 227 (699)
T KOG3665|consen 224 VLDI 227 (699)
T ss_pred eeec
Confidence 8888
No 121
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0073 Score=68.75 Aligned_cols=148 Identities=9% Similarity=0.007 Sum_probs=75.4
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEE-ecCCCCHHHHHHHH
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVR-VSIGYYFGKILDDI 259 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i 259 (706)
+..+.+++|-+..+..+.+.+..+. -...+-++|..|+||||+|+.+.+.---...++.-.|.. +..++..=...+.+
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 3444559999999998888886543 235588999999999999988776211111110000110 00000000001111
Q ss_pred HHhcCCCCCCccccCC-CHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 260 INSLMPPSRARVIIGE-DYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~-~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
...-............ ..+++.+.+... ..+++-++|+|++.. .....+.+...+..-...+.+|++|.+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 0000000000000011 244444333222 234566889999877 456678888888766556666666643
No 122
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.01 E-value=0.0032 Score=62.45 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=70.1
Q ss_pred cccc-cccHHHHHHHHhcC-CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCC--cceEEEecCCCCHHHHHHHHHHh
Q 045386 187 VSEF-ERGREELFDLLIEG-PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFD--CLAWVRVSIGYYFGKILDDIINS 262 (706)
Q Consensus 187 ~vGr-~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~il~~ 262 (706)
++|- .+..-...+.+... +.....+-|+|..|+|||.|.+.+++ ++..... .++++ +..++...+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHHHHH
Confidence 4564 33334444445443 33456688999999999999999999 6554433 24455 456666666665
Q ss_pred cCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHH-HHhhcCC-CCCCcEEEEeeCC
Q 045386 263 LMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDD-LEEVLPD-KQNGSRVLILVTD 329 (706)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~-l~~~l~~-~~~gs~IivTTR~ 329 (706)
+... . ...+++.+++ -=+|++|||.. ....|.+ +...+.. ...|-+||+|++.
T Consensus 83 ~~~~---------~----~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 83 LRDG---------E----IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp HHTT---------S----HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHcc---------c----chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 5432 1 2334444543 33789999977 2333432 3333332 2346789999944
No 123
>PRK08181 transposase; Validated
Probab=97.00 E-value=0.002 Score=65.67 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=55.5
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHh
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYL 288 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 288 (706)
.-+.++|.+|+|||.||..+.+ +.......++|++ ..+++.++....... +.+..... +
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~~~---------~~~~~l~~----l 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARREL---------QLESAIAK----L 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHhCC---------cHHHHHHH----H
Confidence 4589999999999999999987 4433333455553 445555554332110 23332222 2
Q ss_pred cCCceEEEEccCCC-ChhhH--HHHHhhcCCCCCCcEEEEeeCCc
Q 045386 289 TNKKYFIVRDDVFN-DSDIW--DDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 289 ~~kr~LlVlDdvw~-~~~~~--~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
.+-=|||+||+.. ....| ..+...+..--.+..+||||...
T Consensus 166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred -hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 2344999999965 11222 23444443211123588888554
No 124
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0064 Score=66.41 Aligned_cols=141 Identities=12% Similarity=0.030 Sum_probs=75.4
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHH
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDII 260 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 260 (706)
+..+.+++|-+..+..|..++..+. -...+-++|..|+||||+|+.+.+. +.-.-... ........... .|.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~-~~pCg~C~sC~----~i~ 85 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKR--LNCENPIG-NEPCNECTSCL----EIT 85 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh--cCcccccC-ccccCCCcHHH----HHH
Confidence 3344559999999999988887654 2245789999999999999999883 32110000 00000011111 111
Q ss_pred HhcCCCCCCccccCC-CH---HHHHHHHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 261 NSLMPPSRARVIIGE-DY---HLKKSILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 261 ~~l~~~~~~~~~~~~-~~---~~~~~~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
............... +. .++.+.+... ..++.-++|+|++.. ....++.+...+.........|.+|..
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte 160 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE 160 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC
Confidence 111100000000001 22 2233333222 234566899999987 567788887777654445555555544
No 125
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.92 E-value=0.0025 Score=67.15 Aligned_cols=107 Identities=13% Similarity=-0.023 Sum_probs=67.3
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC-Cc-ceEEEecCC-CCHHHHHHHHHHhcCCCCCC
Q 045386 193 GREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF-DC-LAWVRVSIG-YYFGKILDDIINSLMPPSRA 269 (706)
Q Consensus 193 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~vs~~-~~~~~i~~~il~~l~~~~~~ 269 (706)
...++++.+..-. +-.-+.|+|..|+|||||++.+.+ .+...- +. ++|+.+.+. -.+.++.+.+...+.....+
T Consensus 119 ~~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 3445777776532 234569999999999999999888 443332 33 467777665 46788888888877655432
Q ss_pred ccccCC-CHHHHHHHHHHHh--cCCceEEEEccCCC
Q 045386 270 RVIIGE-DYHLKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 270 ~~~~~~-~~~~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
++.... ........+.+.+ ++++.+||+|++-.
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 111111 1222222333333 57999999999854
No 126
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.0091 Score=66.37 Aligned_cols=49 Identities=14% Similarity=-0.020 Sum_probs=38.8
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+..+.+++|-+..+..+.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344559999999999999987653 234567899999999999998876
No 127
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.90 E-value=0.00084 Score=63.40 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=53.2
Q ss_pred cCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhcc-ccccceeeecCccC-----CcchhcCCccCccccc
Q 045386 552 LLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWM-MQKLMHLNFGSITL-----PAPPKNYSSSLKNLIF 625 (706)
Q Consensus 552 ~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~-L~~L~~L~l~~~~l-----p~~i~~~l~~L~~L~~ 625 (706)
+.-.++|++|.+..++ .+..++.|.+|.|++|.|..+-+.+.. +++|..|.+.+..+ -..+. .++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc-cCCccceeee
Confidence 4555566666555444 344556666666666666655444432 34455555522111 01233 4556666665
Q ss_pred ccccccC--CCCchhcCCCCCCCeEEEEccC
Q 045386 626 ISALNPS--SCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 626 ~~~~~~~--~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
..+.... .....-+..+++|+.|+.....
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 5544221 1233446778888888877664
No 128
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0081 Score=67.90 Aligned_cols=139 Identities=9% Similarity=-0.030 Sum_probs=74.6
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 261 (706)
..+.+++|.+..++.|.+++..+. -...+-+.|..|+||||+|+.+.+.---....+ +-..... ..-+.|..
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~~ 81 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALAP 81 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhhc
Confidence 344559999999999999987653 234578999999999999998887311001100 0000000 00001100
Q ss_pred hcCCCCCCc--c-ccCC-CHHH---HHHHHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 262 SLMPPSRAR--V-IIGE-DYHL---KKSILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 262 ~l~~~~~~~--~-~~~~-~~~~---~~~~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
.-+.. .+- . .... ..++ +.+.+... ..+++-++|+|++.. .....+.|...+........+|++|..
T Consensus 82 ~~~~~-~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 82 NGPGS-IDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred ccCCC-ceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00000 000 0 0001 2222 22222221 134566889999876 467788888888766666766666643
No 129
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.89 E-value=0.0039 Score=62.38 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=29.0
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.|.+......+..+.........+.|+|..|+|||+||+.+++
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 33554443333333322223356788999999999999999998
No 130
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.88 E-value=0.0071 Score=61.67 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=73.7
Q ss_pred HHHHHHHHhcC-CCCcEEEEEEcCCCchhhHHHHHHHcCCCcc-----ccCCcceEEEecCCCCHHHHHHHHHHhcCCCC
Q 045386 194 REELFDLLIEG-PSGLSVIAILDSNGFDKTVFAADIYNNNHVK-----FYFDCLAWVRVSIGYYFGKILDDIINSLMPPS 267 (706)
Q Consensus 194 ~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~ 267 (706)
.+.+.++|... ..+..-+.|||.+|.|||++++++....-.. ..+ .++.|.....++...+...|+.+++.+.
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 44444445443 2456779999999999999999998642111 112 4667778888999999999999999886
Q ss_pred CCccccCCCHHHHHHHHHHHhcC-CceEEEEccCCC
Q 045386 268 RARVIIGEDYHLKKSILRDYLTN-KKYFIVRDDVFN 302 (706)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw~ 302 (706)
.. ..+...+...+...++. +--+||+|.+.+
T Consensus 125 ~~----~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 125 RP----RDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred CC----CCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 52 11555666666666655 455889999866
No 131
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.007 Score=65.32 Aligned_cols=45 Identities=16% Similarity=0.006 Sum_probs=36.5
Q ss_pred ccccccccHHHHHHHHhcCCC--------CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 186 DVSEFERGREELFDLLIEGPS--------GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+++|-+..++.+.+++..+.. -..-+-++|+.|+||||+|+.+..
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 388999999999998876431 245688999999999999988865
No 132
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.87 E-value=0.0048 Score=66.86 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=36.5
Q ss_pred cccccccHHHHHHHHhcC-----------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEG-----------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.|+++.+++|.+.+... -...+-|.++|.+|+|||++|+.+++
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 999999999998876421 12356789999999999999999998
No 133
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.0069 Score=71.23 Aligned_cols=132 Identities=12% Similarity=0.069 Sum_probs=75.8
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC---Cc-----ceEEEec--CCC
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF---DC-----LAWVRVS--IGY 250 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~vs--~~~ 250 (706)
+..+.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.-.... .| +.++... ...
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 3344559999999999999987653 23567899999999999999887632111111 00 0000000 001
Q ss_pred CHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHH-----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEE
Q 045386 251 YFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILRDY-----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRV 323 (706)
Q Consensus 251 ~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~-----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~I 323 (706)
|+.+ +... .. ..+++.+ +++. ..+++-++|||++.. ....++.|...+..-...+.+
T Consensus 90 dv~e--------idaa-------s~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 90 DVTE--------IDAA-------SHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred cEEE--------eccc-------ccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 1100 0000 11 2333332 2221 234555788999887 567888888888876667777
Q ss_pred EEeeCC
Q 045386 324 LILVTD 329 (706)
Q Consensus 324 ivTTR~ 329 (706)
|++|.+
T Consensus 154 Il~tt~ 159 (824)
T PRK07764 154 IFATTE 159 (824)
T ss_pred EEEeCC
Confidence 766643
No 134
>PRK12377 putative replication protein; Provisional
Probab=96.84 E-value=0.0045 Score=62.29 Aligned_cols=74 Identities=18% Similarity=0.068 Sum_probs=46.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
...+.++|..|+|||+||..+.+ ........++++++ .+++..|-....... .... +.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~------~~l~~~l~~~~~~~~--------~~~~----~l~~ 160 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV------PDVMSRLHESYDNGQ--------SGEK----FLQE 160 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH------HHHHHHHHHHHhccc--------hHHH----HHHH
Confidence 46789999999999999999999 55544444566644 345554443332110 1222 2222
Q ss_pred hcCCceEEEEccCCC
Q 045386 288 LTNKKYFIVRDDVFN 302 (706)
Q Consensus 288 L~~kr~LlVlDdvw~ 302 (706)
+ .+-=||||||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 2 3456899999954
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.83 E-value=0.006 Score=67.13 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=59.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccC-C-cceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYF-D-CLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
..-+-|+|..|+|||+|++.+++ ++.... + .++|++ ..++..++...+... ..++ ++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~---------~~~~----f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT------SEKFLNDLVDSMKEG---------KLNE----FR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHhcc---------cHHH----HH
Confidence 45699999999999999999999 555443 3 245553 345666666655422 2222 33
Q ss_pred HHhcCCceEEEEccCCC--ChhhH-HHHHhhcCC-CCCCcEEEEeeC
Q 045386 286 DYLTNKKYFIVRDDVFN--DSDIW-DDLEEVLPD-KQNGSRVLILVT 328 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~--~~~~~-~~l~~~l~~-~~~gs~IivTTR 328 (706)
+.+..+.-+|++||+.. +...+ +.+...+.. ...|..||+||.
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 33334456899999975 12222 233333321 123456888874
No 136
>PRK06526 transposase; Provisional
Probab=96.82 E-value=0.0026 Score=64.41 Aligned_cols=100 Identities=10% Similarity=0.107 Sum_probs=52.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
..-+.++|.+|+|||+||..+.... ....+ .+.|+ +..++...+....... .. ...+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~~~---------~~---~~~l~~l 157 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHHAG---------RL---QAELVKL 157 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHhcC---------cH---HHHHHHh
Confidence 3468999999999999999998732 12222 23333 3444555543321110 11 1222222
Q ss_pred hcCCceEEEEccCCC-C--hhhHHHHHhhcCC-CCCCcEEEEeeCCc
Q 045386 288 LTNKKYFIVRDDVFN-D--SDIWDDLEEVLPD-KQNGSRVLILVTDP 330 (706)
Q Consensus 288 L~~kr~LlVlDdvw~-~--~~~~~~l~~~l~~-~~~gs~IivTTR~~ 330 (706)
.+.-+||+||+.. . ...-+.+...+.. ...++ +|+||...
T Consensus 158 --~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 158 --GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred --ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 2345899999975 1 1222223333322 12344 88887544
No 137
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.80 E-value=0.0054 Score=61.60 Aligned_cols=115 Identities=10% Similarity=0.125 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcccc
Q 045386 194 REELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVII 273 (706)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~ 273 (706)
+..+.++......+...+.++|.+|+|||+||..+.+ .....-..++++ ++.+++..+-........
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~i------t~~~l~~~l~~~~~~~~~----- 151 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLII------TVADIMSAMKDTFSNSET----- 151 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEE------EHHHHHHHHHHHHhhccc-----
Confidence 3344444433222345788999999999999999998 443332345555 345555555443321100
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEccCCCC-hhhHHH--HHhhcCC-CCCCcEEEEeeC
Q 045386 274 GEDYHLKKSILRDYLTNKKYFIVRDDVFND-SDIWDD--LEEVLPD-KQNGSRVLILVT 328 (706)
Q Consensus 274 ~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~--l~~~l~~-~~~gs~IivTTR 328 (706)
+.+.+. +.+. +.=+||+||+... ..+|.. +...+.. -...-.+||||-
T Consensus 152 --~~~~~l----~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 152 --SEEQLL----NDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred --cHHHHH----HHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 222322 3344 3448889999762 445553 3333331 112234666663
No 138
>PRK09087 hypothetical protein; Validated
Probab=96.78 E-value=0.004 Score=62.07 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.+.+.|+|..|+|||+|++.++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998873
No 139
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.77 E-value=0.012 Score=58.17 Aligned_cols=114 Identities=19% Similarity=0.264 Sum_probs=72.5
Q ss_pred cccccccHHHHHHHHh---cCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhc
Q 045386 187 VSEFERGREELFDLLI---EGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSL 263 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l 263 (706)
++|.+..++.|++-.. .+. ...-+-++|..|.|||++++.+.+...-+. .--|.|.+. +
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-~------------ 90 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-D------------ 90 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH-H------------
Confidence 9999999988876432 222 355677899999999999999998321111 112333222 0
Q ss_pred CCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC---CCCcEEEEeeCCc
Q 045386 264 MPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK---QNGSRVLILVTDP 330 (706)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~---~~gs~IivTTR~~ 330 (706)
+. ++..+...|+. ...||+|++||+.- +...+..++..+..+ .+...+|..|-|.
T Consensus 91 ---------L~-~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 91 ---------LG-DLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred ---------hc-cHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 00 44445555542 35799999999876 367788888888743 3444555555443
No 140
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.77 E-value=0.0016 Score=61.63 Aligned_cols=73 Identities=25% Similarity=0.249 Sum_probs=30.8
Q ss_pred cEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhc-CCCCCcEEEccCCCCCccch--hhccccccceeee
Q 045386 531 RVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLC-TLLNLETLEMPSSYIDQSPE--DIWMMQKLMHLNF 604 (706)
Q Consensus 531 ~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~-~L~~L~~L~L~~~~~~~lP~--~l~~L~~L~~L~l 604 (706)
..+||++|.+-.++ .+..++.|.+|.|++|+|+.+-+.+. .+++|.+|.|.+|.+..+-+ .+..+++|++|.+
T Consensus 45 d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34444444433221 23334444445555444444433332 23344455554444433322 2334444444444
No 141
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.012 Score=66.85 Aligned_cols=142 Identities=12% Similarity=0.014 Sum_probs=74.7
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCC--cceEEEecCCCCHHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFD--CLAWVRVSIGYYFGKILDDI 259 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i 259 (706)
..+.+++|.+..++.+.+.+..+. -..-+-++|..|+||||+|+.+.+.---..... ...+- .+..-.--+.|
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHH
Confidence 344459999999999999887653 244688899999999999999887311111000 00000 00000001111
Q ss_pred HHhcCCCCCCccccCC-CHHHHHH---HHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeC
Q 045386 260 INSLMPPSRARVIIGE-DYHLKKS---ILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVT 328 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~-~~~~~~~---~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR 328 (706)
...-............ ..+++.+ .++.. ..+++-++|+|++.. .....+.+...+..-..++++|++|.
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 1111000000000001 3333332 22111 124556789999876 45667788887776666777777663
No 142
>CHL00181 cbbX CbbX; Provisional
Probab=96.73 E-value=0.012 Score=60.98 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=30.1
Q ss_pred cccccccHHHHHHHH---hcC----------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLL---IEG----------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L---~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..+++|.++. .-. ......+.++|.+|+||||+|+.++.
T Consensus 25 l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 25 LVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 777776666554432 111 11233478899999999999999977
No 143
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.72 E-value=0.0084 Score=66.54 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCc--ceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDC--LAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSIL 284 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l 284 (706)
...-+-|+|..|+|||+|++.+.+ ++...+.. ++++ +..++..++...+... ..+ .+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi------~~~~~~~~~~~~~~~~---------~~~----~~ 205 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYV------TSEKFTNDFVNALRNN---------TME----EF 205 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHcC---------cHH----HH
Confidence 346689999999999999999999 66555432 3444 3334445555544321 222 23
Q ss_pred HHHhcCCceEEEEccCCC--Chh-hHHHHHhhcCC-CCCCcEEEEeeCC
Q 045386 285 RDYLTNKKYFIVRDDVFN--DSD-IWDDLEEVLPD-KQNGSRVLILVTD 329 (706)
Q Consensus 285 ~~~L~~kr~LlVlDdvw~--~~~-~~~~l~~~l~~-~~~gs~IivTTR~ 329 (706)
.+.++ +--+||+||+.. ... ..+.+...+.. ...|..||+||..
T Consensus 206 ~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 206 KEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred HHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 33333 244899999965 111 12333333321 1234567887744
No 144
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.019 Score=65.75 Aligned_cols=122 Identities=10% Similarity=0.069 Sum_probs=74.7
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCc---------------------cccCC
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHV---------------------KFYFD 239 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~ 239 (706)
+..+.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+...--- ..+|+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 3445559999999999999987653 2356789999999999999887762110 01122
Q ss_pred cceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhc
Q 045386 240 CLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVL 314 (706)
Q Consensus 240 ~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l 314 (706)
. ..+..+... ..+++...+.+. ..+++-++|+|++.. ....++.+...+
T Consensus 92 ~-~~ld~~~~~-------------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~L 145 (614)
T PRK14971 92 I-HELDAASNN-------------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTL 145 (614)
T ss_pred e-EEecccccC-------------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHH
Confidence 1 111111111 223333222211 124555889999877 467788888888
Q ss_pred CCCCCCcEEEEeeCC
Q 045386 315 PDKQNGSRVLILVTD 329 (706)
Q Consensus 315 ~~~~~gs~IivTTR~ 329 (706)
..-..++.+|++|..
T Consensus 146 Eepp~~tifIL~tt~ 160 (614)
T PRK14971 146 EEPPSYAIFILATTE 160 (614)
T ss_pred hCCCCCeEEEEEeCC
Confidence 776667777666643
No 145
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00012 Score=72.64 Aligned_cols=154 Identities=15% Similarity=0.153 Sum_probs=94.3
Q ss_pred ccccCcccccEEEecCCCCC-cCCccccccccCcEEEcccC-Cccc--cChhhcCCCCCcEEEccCCCCC-c-cchhhcc
Q 045386 522 NFCKKFKHLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIP-SLKR--LPSLLCTLLNLETLEMPSSYID-Q-SPEDIWM 595 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~-~l~~--lP~~i~~L~~L~~L~L~~~~~~-~-lP~~l~~ 595 (706)
..++.+..|+.|.|+|+++. .+-..+.+-.+|+.|+|+.+ .+++ +---+.++..|+.|+|+-|.+. . ....+.+
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 45667788888888888877 45566777788888888875 4553 2223567888888888888432 1 1111222
Q ss_pred c-cccceeeecCc-------cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHH---h
Q 045386 596 M-QKLMHLNFGSI-------TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSK---S 664 (706)
Q Consensus 596 L-~~L~~L~l~~~-------~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~---~ 664 (706)
. ++|..|++.+. .+..-.. ++++|.+|+++++.........++-+++.|++|.++.|. ...|. .
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~-rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY----~i~p~~~~~ 358 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY----DIIPETLLE 358 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHH-hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc----CCChHHeee
Confidence 1 36666666322 0111123 566777777776655443356667777777777777664 22222 4
Q ss_pred cCCCCCCcEEEEeeCC
Q 045386 665 LCELHKLECLKLVNES 680 (706)
Q Consensus 665 l~~l~~L~~L~L~~~~ 680 (706)
+...++|.+|++.|+-
T Consensus 359 l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccCcceEEEEecccc
Confidence 5566777777777754
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.71 E-value=0.0062 Score=71.70 Aligned_cols=115 Identities=12% Similarity=0.152 Sum_probs=67.7
Q ss_pred cccccccHHHHHHHHhcC-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDI 259 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 259 (706)
++|.+..++.|.+.+... +....++.++|+.|+|||+||+.+.. ... ...+.++.|+-.+.. .+
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l~---~~~~~~d~se~~~~~----~~ 526 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--ALG---VHLERFDMSEYMEKH----TV 526 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hhc---CCeEEEeCchhhhcc----cH
Confidence 788888888888877631 12345788999999999999999988 332 223445444321111 11
Q ss_pred HHhcCCCCCCccccCCCHHHHHHHHHHHhcCC-ceEEEEccCCC-ChhhHHHHHhhcCC
Q 045386 260 INSLMPPSRARVIIGEDYHLKKSILRDYLTNK-KYFIVRDDVFN-DSDIWDDLEEVLPD 316 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdvw~-~~~~~~~l~~~l~~ 316 (706)
...++.... .. +.++ ...+.+.++.+ ..+|+||++.. +.+.++.+...+..
T Consensus 527 ~~lig~~~g----yv-g~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 527 SRLIGAPPG----YV-GFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HHHhcCCCC----Cc-ccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 122222211 01 1111 11233344334 45999999988 67788888877754
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.014 Score=66.41 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=38.5
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+.+++|.+..+..+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344459999999999999887653 235667899999999999988877
No 148
>PRK09183 transposase/IS protein; Provisional
Probab=96.69 E-value=0.0044 Score=63.11 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-..+.|+|.+|+|||+||..+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34677999999999999999976
No 149
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.0091 Score=68.30 Aligned_cols=142 Identities=11% Similarity=0.029 Sum_probs=76.6
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHH
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDII 260 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 260 (706)
+..+.+++|-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+. +.-. .+-.....++.-...+.|.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~----~~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA--VNCT----TNDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH--hcCC----CCCCCCCCCccCHHHHHHh
Confidence 3344559999999999988887653 2356679999999999999999872 2110 0000001111112223332
Q ss_pred HhcCCCCCCccccCC-CHHHHHH---HHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 261 NSLMPPSRARVIIGE-DYHLKKS---ILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 261 ~~l~~~~~~~~~~~~-~~~~~~~---~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
.......-....... ..+++.+ .+... ..+++-++|+|++.. .....+.+...+......+.+|++|.+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 221111000000011 2333322 22111 124566899999876 356677787777665556777776644
No 150
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.014 Score=66.87 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=85.7
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCcccc---C-CcceE-EEecCCCCHHHH
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFY---F-DCLAW-VRVSIGYYFGKI 255 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~w-v~vs~~~~~~~i 255 (706)
+..+.+++|-+..+..+.+.+..+. -...+-++|..|+||||+|+.+...---... + .|... -+....+++.+
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie- 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE- 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-
Confidence 3344559999999999999887653 3456678999999999999988762100000 0 00000 00000111000
Q ss_pred HHHHHHhcCCCCCCccccCC-CHHHHHHHHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 256 LDDIINSLMPPSRARVIIGE-DYHLKKSILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
+.... .... +..++.+.+... ..+++-++|+|++.. ....+..+...+........+|++|...
T Consensus 92 -------idaas----n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~-- 158 (725)
T PRK07133 92 -------MDAAS----NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV-- 158 (725)
T ss_pred -------Eeccc----cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh--
Confidence 00000 0000 122333332221 135666899999876 4567888887777655566666666443
Q ss_pred eeccccccCCCccceeeecccccccCC--HHHHHHHH
Q 045386 333 LTFFELEHGGIIPLYSVPVGGPLIRLK--HEAWQFFI 367 (706)
Q Consensus 333 ~af~~~~c~~glPLai~~~g~~L~~~~--~~~w~~~~ 367 (706)
..+|-+|..-+..+...+ .+++...+
T Consensus 159 ---------~KLl~TI~SRcq~ieF~~L~~eeI~~~L 186 (725)
T PRK07133 159 ---------HKIPLTILSRVQRFNFRRISEDEIVSRL 186 (725)
T ss_pred ---------hhhhHHHHhhceeEEccCCCHHHHHHHH
Confidence 445545444444444444 44444333
No 151
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.67 E-value=0.012 Score=60.85 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=28.9
Q ss_pred cccccccHHHHHHH---HhcC--------C--CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDL---LIEG--------P--SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~---L~~~--------~--~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.++.+++|.++ +... . ....-+.++|.+|.||||+|+.+..
T Consensus 24 l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 67776666665443 2111 0 1123578999999999999977766
No 152
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.023 Score=63.40 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHccccCCCCCCccccCC-------ccc--cc----ccCCCCCccc-cccccccHHHHHHHHhcC-
Q 045386 140 LLFGLHSKIMDIRDRMQQLPPGDNGFDITEQS-------NKI--IR----LLSKGQHWLD-VSEFERGREELFDLLIEG- 204 (706)
Q Consensus 140 ~r~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~-------~~~--~~----~~~~~~~~~~-~vGr~~~~~~i~~~L~~~- 204 (706)
....+.+-+.+-..+++.+-.....|++...- |+. +. -.+......+ =.|.++-+++|++++.-.
T Consensus 352 ~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~k 431 (906)
T KOG2004|consen 352 MPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGK 431 (906)
T ss_pred CcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHh
Confidence 34555666777777888888778888765321 110 00 0011111112 689999999999998643
Q ss_pred ---CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHH
Q 045386 205 ---PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKK 281 (706)
Q Consensus 205 ---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~ 281 (706)
..+-++++.+|++|||||.+|+.|.. .....| +-++|..-.|..+|- +... .-...-+..++
T Consensus 432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIk--------GHRR--TYVGAMPGkiI 496 (906)
T KOG2004|consen 432 LRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIK--------GHRR--TYVGAMPGKII 496 (906)
T ss_pred hcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhc--------ccce--eeeccCChHHH
Confidence 45679999999999999999999998 776666 235666666655531 1110 00111334455
Q ss_pred HHHHHHhcCCceEEEEccCCC
Q 045386 282 SILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~ 302 (706)
+.+++. +...=|+.+|.|..
T Consensus 497 q~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 497 QCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred HHHHhh-CCCCceEEeehhhh
Confidence 555443 33455788888764
No 153
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.64 E-value=0.0087 Score=65.50 Aligned_cols=100 Identities=15% Similarity=0.211 Sum_probs=56.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCC--cceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFD--CLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
...+.|+|..|+|||+|++.+++ ++..... .++++ +..++..++...+... ..+. +.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi------~~~~~~~~~~~~~~~~---------~~~~----~~ 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYV------SSEKFTNDFVNALRNN---------KMEE----FK 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEE------EHHHHHHHHHHHHHcC---------CHHH----HH
Confidence 45688999999999999999999 5544432 24455 3444555555555322 2222 23
Q ss_pred HHhcCCceEEEEccCCC--Chhh-HHHHHhhcCC-CCCCcEEEEeeCC
Q 045386 286 DYLTNKKYFIVRDDVFN--DSDI-WDDLEEVLPD-KQNGSRVLILVTD 329 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~--~~~~-~~~l~~~l~~-~~~gs~IivTTR~ 329 (706)
+.+++ .-+||+||+.. .... .+.+...+.. ...|..||+||..
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 33332 34889999975 1211 2233333321 1235568887743
No 154
>PHA00729 NTP-binding motif containing protein
Probab=96.63 E-value=0.0063 Score=59.78 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 196 ELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+++.+...+ ...|.|.|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH
Confidence 3455554443 56789999999999999999988
No 155
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.016 Score=65.44 Aligned_cols=142 Identities=11% Similarity=0.028 Sum_probs=73.2
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHH
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDII 260 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 260 (706)
+..+.+++|-+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+.---....+. ..++.=..-+.|.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 3344458998888888888876542 2467778999999999999988873211110000 0001001111111
Q ss_pred HhcCCCCCCccccCC-CHHHHH---HHHHH-HhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 261 NSLMPPSRARVIIGE-DYHLKK---SILRD-YLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 261 ~~l~~~~~~~~~~~~-~~~~~~---~~l~~-~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
............... ..+++. +.+.. -..+++-+||+|++.. ....++.|...+........+|++|.+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 100000000000001 222222 22221 1235667899999876 4567788887776544456666666543
No 156
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.59 E-value=0.029 Score=62.64 Aligned_cols=156 Identities=11% Similarity=0.004 Sum_probs=83.3
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCC--ccccC-CcceEEEecCCCCHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNH--VKFYF-DCLAWVRVSIGYYFGKILDD 258 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F-~~~~wv~vs~~~~~~~i~~~ 258 (706)
..+.+++|-+..++.+...+..+. -..+.-++|..|+||||+|+.+.+.-- -...+ .|. +| .--+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~--~C--------~~C~~ 79 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD--TC--------IQCQS 79 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc--cc--------HHHHH
Confidence 344559999999999998886653 345668999999999999997765210 00010 000 00 00000
Q ss_pred HHHhcCCCCCCccccCC-CHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 259 IINSLMPPSRARVIIGE-DYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 259 il~~l~~~~~~~~~~~~-~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
+........-....... ..+++.+.+... ..+++-++|+|++.. .....+.+...+......+++|++|.+.
T Consensus 80 ~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~-- 157 (535)
T PRK08451 80 ALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP-- 157 (535)
T ss_pred HhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh--
Confidence 00000000000000001 233333333221 124566889999977 5667777877777666677878777654
Q ss_pred eeccccccCCCccceeeecccccccCC
Q 045386 333 LTFFELEHGGIIPLYSVPVGGPLIRLK 359 (706)
Q Consensus 333 ~af~~~~c~~glPLai~~~g~~L~~~~ 359 (706)
..+|-+|..-+..++.++
T Consensus 158 ---------~kL~~tI~SRc~~~~F~~ 175 (535)
T PRK08451 158 ---------LKLPATILSRTQHFRFKQ 175 (535)
T ss_pred ---------hhCchHHHhhceeEEcCC
Confidence 444444444444444444
No 157
>PRK10536 hypothetical protein; Provisional
Probab=96.57 E-value=0.009 Score=59.74 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=34.8
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+.++.......+.+|... .+|.+.|..|.|||+||..+..+
T Consensus 57 i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence 777888888888888653 49999999999999999888774
No 158
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.57 E-value=0.0055 Score=62.09 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCC-cceEEEecCCCC-HHHHHHHHHHhcCCCCCCcc--ccCC------CH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFD-CLAWVRVSIGYY-FGKILDDIINSLMPPSRARV--IIGE------DY 277 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~il~~l~~~~~~~~--~~~~------~~ 277 (706)
-.-++|+|..|+|||||++.+++ .+..+|+ .++++-+.+... +.++.+++.+.-.....--. ..+. -.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999999999999 6665664 456666666643 45666665543111100000 0111 11
Q ss_pred HHHHHHHHHHh---cCCceEEEEccCCCChhhHHHHH
Q 045386 278 HLKKSILRDYL---TNKKYFIVRDDVFNDSDIWDDLE 311 (706)
Q Consensus 278 ~~~~~~l~~~L---~~kr~LlVlDdvw~~~~~~~~l~ 311 (706)
....-.+.+++ +++.+||++||+-.-...+.++.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis 183 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVS 183 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHH
Confidence 12333455555 38999999999866233344443
No 159
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.56 E-value=0.015 Score=55.37 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=64.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCC-Cc--cc---cCC--cceEEEecCCCCHHHHHHHHHHhcCCCCC-CccccCC---
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNN-HV--KF---YFD--CLAWVRVSIGYYFGKILDDIINSLMPPSR-ARVIIGE--- 275 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~i~~~il~~l~~~~~-~~~~~~~--- 275 (706)
-.+++|+|..|+|||||.+.+..+. ++ .. .|. .+.| +.+ .+.++.++.... .......
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--IDQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--EhH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999986431 11 11 111 1223 222 456677765421 1001112
Q ss_pred CHHHHHHHHHHHhcCC--ceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcce
Q 045386 276 DYHLKKSILRDYLTNK--KYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPIL 332 (706)
Q Consensus 276 ~~~~~~~~l~~~L~~k--r~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v 332 (706)
...+... +...+-.+ .-++++|.--. |....+.+...+... ..|..||++|.+...
T Consensus 91 Gq~qrl~-laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 91 GELQRVK-LASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred HHHHHHH-HHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 2333333 44444455 66788898766 455555555555432 247788899887654
No 160
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.56 E-value=0.01 Score=63.12 Aligned_cols=112 Identities=9% Similarity=0.024 Sum_probs=74.6
Q ss_pred cccccccHHHHHHHHhcC--CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcC
Q 045386 187 VSEFERGREELFDLLIEG--PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLM 264 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~ 264 (706)
++||+.+++.+.+++... .....-+-|.|.+|.|||.+...|+.+..-...=.+++++..-.=-....++..|...+.
T Consensus 152 l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~ 231 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLL 231 (529)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHH
Confidence 999999999999998753 234677889999999999999999985322111112344433222356677788777772
Q ss_pred CCCCCccccCCCHHHHHHHHHHHhcCC--ceEEEEccCCC
Q 045386 265 PPSRARVIIGEDYHLKKSILRDYLTNK--KYFIVRDDVFN 302 (706)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdvw~ 302 (706)
..... ..+..+.++.+.++..+. -+|+|||.+..
T Consensus 232 q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 232 QDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHhcC----CchhHHHHHHHHHHHhcccceEEEEechhhH
Confidence 22110 113356777777877664 48899998754
No 161
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.55 E-value=0.0088 Score=62.35 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=63.8
Q ss_pred ccHHHHHHHHhcCC--CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCC
Q 045386 192 RGREELFDLLIEGP--SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRA 269 (706)
Q Consensus 192 ~~~~~i~~~L~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~ 269 (706)
.......+++..-. ...+-+-++|..|+|||.||..+++ +....=-.+.++++ .+++.++-......
T Consensus 138 ~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~------~~l~~~lk~~~~~~--- 206 (306)
T PRK08939 138 DALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHF------PEFIRELKNSISDG--- 206 (306)
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEH------HHHHHHHHHHHhcC---
Confidence 33444445554211 1346788999999999999999999 44332223455543 35556655544321
Q ss_pred ccccCCCHHHHHHHHHHHhcCCceEEEEccCCCC-hhhHHH--HHh-hcCCC-CCCcEEEEee
Q 045386 270 RVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFND-SDIWDD--LEE-VLPDK-QNGSRVLILV 327 (706)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~--l~~-~l~~~-~~gs~IivTT 327 (706)
+..+. +.. + .+-=||||||+..+ ...|.. +.. .+..- ..+-.+|+||
T Consensus 207 ------~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TS 258 (306)
T PRK08939 207 ------SVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTS 258 (306)
T ss_pred ------cHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEEC
Confidence 22222 222 2 24558999999762 556753 433 33322 2344577777
No 162
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.55 E-value=0.0059 Score=72.59 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=67.0
Q ss_pred cccccccHHHHHHHHhc-------CCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHH-H
Q 045386 187 VSEFERGREELFDLLIE-------GPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILD-D 258 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~-~ 258 (706)
++|.+..++.+.+.+.. .+....++.++|..|+|||.||+.+.. .+-...+ .++.+ |+.+... .
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~--~l~~~~~--~~~~~----dmse~~~~~ 639 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE--LLYGGEQ--NLITI----NMSEFQEAH 639 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH--HHhCCCc--ceEEE----eHHHhhhhh
Confidence 89999999999888853 123456889999999999999988876 2211111 22222 2222211 1
Q ss_pred HHHhc-CCCCCCccccCC-CHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCC
Q 045386 259 IINSL-MPPSRARVIIGE-DYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDK 317 (706)
Q Consensus 259 il~~l-~~~~~~~~~~~~-~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~ 317 (706)
-...+ +.+.. .... ....+.+.+++ ....+|+||++.. +.+.++.+...+..+
T Consensus 640 ~~~~l~g~~~g---yvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g 695 (852)
T TIGR03345 640 TVSRLKGSPPG---YVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKG 695 (852)
T ss_pred hhccccCCCCC---cccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcc
Confidence 11122 22111 0111 11223333332 4456999999977 677788887777644
No 163
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.023 Score=62.78 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=39.1
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+..+.+++|.+..+..+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3445559999999999999887653 235678899999999999988876
No 164
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.51 E-value=0.0012 Score=63.25 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=41.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
-.-+.++|..|+|||.||..+.+ +...+=..+.|+. ..+++..+-..- . +...+... +.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~------~~~L~~~l~~~~----~-----~~~~~~~~----~~ 105 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT------ASDLLDELKQSR----S-----DGSYEELL----KR 105 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE------HHHHHHHHHCCH----C-----CTTHCHHH----HH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee------cCceeccccccc----c-----ccchhhhc----Cc
Confidence 45699999999999999999987 3332212355663 445555543211 1 00222222 22
Q ss_pred hcCCceEEEEccCCC
Q 045386 288 LTNKKYFIVRDDVFN 302 (706)
Q Consensus 288 L~~kr~LlVlDdvw~ 302 (706)
+.+ -=||||||+..
T Consensus 106 l~~-~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LKR-VDLLILDDLGY 119 (178)
T ss_dssp HHT-SSCEEEETCTS
T ss_pred ccc-ccEecccccce
Confidence 332 34778999977
No 165
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.50 E-value=0.012 Score=64.95 Aligned_cols=101 Identities=11% Similarity=0.159 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCc--ceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDC--LAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
..-+-|+|..|+|||+|++.+.+ .+...... ++++ +..++...+...+.... .....++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-----------~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKTH-----------KEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-----------hHHHHHH
Confidence 45688999999999999999998 44432222 3333 34567777766654311 1123344
Q ss_pred HHhcCCceEEEEccCCC-C-hhh-HHHHHhhcCC-CCCCcEEEEeeC
Q 045386 286 DYLTNKKYFIVRDDVFN-D-SDI-WDDLEEVLPD-KQNGSRVLILVT 328 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~-~-~~~-~~~l~~~l~~-~~~gs~IivTTR 328 (706)
+.++ +.-+||+||+.. . ... .+.+...+.. ...|..||+|+.
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 4443 344889999976 1 222 3444444442 234557888873
No 166
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.49 E-value=0.013 Score=56.20 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=67.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEE---ecCCCCHHHHH------HHHHHhcCCCCCCccccCC---
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVR---VSIGYYFGKIL------DDIINSLMPPSRARVIIGE--- 275 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~i~------~~il~~l~~~~~~~~~~~~--- 275 (706)
-.+++|+|..|.|||||++.++... ......+++. +. ..+..... .++++.++...........
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4699999999999999999999732 2233334332 21 11222211 1245555543211001112
Q ss_pred CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CC-CcEEEEeeCCcc
Q 045386 276 DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QN-GSRVLILVTDPI 331 (706)
Q Consensus 276 ~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~-gs~IivTTR~~~ 331 (706)
...+.. .+...+-...-++++|.--. |....+.+...+..- .. |..||++|.+..
T Consensus 101 G~~qrl-~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 101 GERQRV-LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHH-HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 333333 45555556777889998766 555566666655432 22 678888887754
No 167
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.48 E-value=0.039 Score=65.40 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=75.3
Q ss_pred cCHHHHHHHHHHHHhhhc---hHHHHHHHHHHhhhcCCcceeecccchhhhHHHHHHHHHHHHHHHccccCCCCCCcccc
Q 045386 93 KRRDILEILDDINHFVHE---SDEAIDTFFINIMEQQNSENESESSTNMALLFGLHSKIMDIRDRMQQLPPGDNGFDITE 169 (706)
Q Consensus 93 ~~~~v~~Wl~~lr~~ayd---~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~l~~~l~~i~~~~~~~~~~~ 169 (706)
.+-.++..|+.+++=.-+ -++-+++|..+.... .....+.+++.+-.+|++.+......|.+..
T Consensus 224 r~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~-------------~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 290 (775)
T TIGR00763 224 REYYLREQLKAIKKELGIEKDDKDELEKLKEKLEEL-------------KLPEEVKKVIEKELTKLSLLEPSSSEFTVTR 290 (775)
T ss_pred HHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhc-------------CCCHHHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 334455566666554443 233456666554432 2334555666666677777766666665432
Q ss_pred CC-----cccccccCC--------CCCccc-cccccccHHHHHHHHhc----CCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 170 QS-----NKIIRLLSK--------GQHWLD-VSEFERGREELFDLLIE----GPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 170 ~~-----~~~~~~~~~--------~~~~~~-~vGr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.- ..+...... ...+.+ ++|.++.++.|.+++.. ...+-.++.++|.+|+|||++|+.+.+
T Consensus 291 ~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~- 369 (775)
T TIGR00763 291 NYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK- 369 (775)
T ss_pred HHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH-
Confidence 10 000000000 001111 88999999999887642 222345899999999999999999998
Q ss_pred CCccccC
Q 045386 232 NHVKFYF 238 (706)
Q Consensus 232 ~~~~~~F 238 (706)
.....|
T Consensus 370 -~l~~~~ 375 (775)
T TIGR00763 370 -ALNRKF 375 (775)
T ss_pred -HhcCCe
Confidence 554444
No 168
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.44 E-value=0.0092 Score=61.04 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=31.9
Q ss_pred cccccccHHHHHHH---Hhc----------CCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDL---LIE----------GPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~---L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..+++|.+. ..- ..+...-+.++|.+|+||||+|+.+++
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 78888777666433 211 123456678999999999999999986
No 169
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.44 E-value=0.013 Score=56.10 Aligned_cols=111 Identities=10% Similarity=0.051 Sum_probs=60.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEE-----------------ecCCCCH--HHHHHHHHHhcCCCCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVR-----------------VSIGYYF--GKILDDIINSLMPPSR 268 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-----------------vs~~~~~--~~i~~~il~~l~~~~~ 268 (706)
-.+++|+|..|.|||||++.+..-.... ...+++. +.+.+.. ..+...+ ..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i----~~--- 97 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL----GR--- 97 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh----cc---
Confidence 4689999999999999999999753211 1222221 1121111 0111111 00
Q ss_pred CccccCCCHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 269 ARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
.+.....+. -.+...+-.++-+++||.... |....+.+...+.....|..||++|.+...
T Consensus 98 ---~LS~G~~qr-v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 98 ---RFSGGERQR-LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred ---cCCHHHHHH-HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 011022223 344555556677889998877 544445554444432346788888877643
No 170
>PRK07261 topology modulation protein; Provisional
Probab=96.44 E-value=0.0048 Score=58.66 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=42.0
Q ss_pred EEEEEcCCCchhhHHHHHHHcCCCcc-ccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHH
Q 045386 210 VIAILDSNGFDKTVFAADIYNNNHVK-FYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILRDY 287 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~ 287 (706)
.|.|+|++|+||||||+.+.....+. -+.|...|-.. ... +.++....+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~--------------------------~~~~~~~~~~~~~~~~ 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN--------------------------WQERDDDDMIADISNF 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc--------------------------cccCCHHHHHHHHHHH
Confidence 48999999999999999998632221 23444444211 011 455666677777
Q ss_pred hcCCceEEEEccCCC
Q 045386 288 LTNKKYFIVRDDVFN 302 (706)
Q Consensus 288 L~~kr~LlVlDdvw~ 302 (706)
+.+.+ .|+|+...
T Consensus 56 ~~~~~--wIidg~~~ 68 (171)
T PRK07261 56 LLKHD--WIIDGNYS 68 (171)
T ss_pred HhCCC--EEEcCcch
Confidence 76666 67888755
No 171
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.43 E-value=0.0094 Score=62.69 Aligned_cols=101 Identities=11% Similarity=0.154 Sum_probs=53.9
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHh
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYL 288 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L 288 (706)
.-+.++|..|+|||+||..+.+ ++...-..++++++ .+++..+...-..... +.... + +.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~------~~l~~~l~~~~~~~~~-------~~~~~---~-~~l 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA------DELIEILREIRFNNDK-------ELEEV---Y-DLL 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH------HHHHHHHHHHHhccch-------hHHHH---H-HHh
Confidence 6799999999999999999998 44332224556543 3344443321111100 11111 2 222
Q ss_pred cCCceEEEEccCCCC-hhhH--HHHHhhcCCC-CCCcEEEEeeCC
Q 045386 289 TNKKYFIVRDDVFND-SDIW--DDLEEVLPDK-QNGSRVLILVTD 329 (706)
Q Consensus 289 ~~kr~LlVlDdvw~~-~~~~--~~l~~~l~~~-~~gs~IivTTR~ 329 (706)
.+ -=|||+||+... ...| ..+...+..- ..+-.+||||-.
T Consensus 245 ~~-~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 245 IN-CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred cc-CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 22 248999999662 2223 3344444321 234568888743
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.43 E-value=0.0076 Score=71.86 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=36.8
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+..
T Consensus 180 vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 180 VIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 9999999999999997754 34556999999999999999887
No 173
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.017 Score=57.70 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=72.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCC-----cc------ccC---CcceEEEecCCC------CH---------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNH-----VK------FYF---DCLAWVRVSIGY------YF--------------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~vs~~~------~~--------------- 252 (706)
-.+++|+|+.|.|||||.+.+..--+ +. ..+ ..+.||.-...+ .+
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 37999999999999999999997211 10 001 123443211110 11
Q ss_pred -------HHHHHHHHHhcCCCCCCccccCC--CHHHHHHHHHHHhcCCceEEEEccCCC--C---hhhHHHHHhhcCCCC
Q 045386 253 -------GKILDDIINSLMPPSRARVIIGE--DYHLKKSILRDYLTNKKYFIVRDDVFN--D---SDIWDDLEEVLPDKQ 318 (706)
Q Consensus 253 -------~~i~~~il~~l~~~~~~~~~~~~--~~~~~~~~l~~~L~~kr~LlVlDdvw~--~---~~~~~~l~~~l~~~~ 318 (706)
++...+.+++.+...-....+.+ .-+.-.-.|.+.|..+.=|+|||.--. | .....++..-+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 24455566666554322112333 333344567888888999999996444 3 33344444444333
Q ss_pred CCcEEEEeeCCccee
Q 045386 319 NGSRVLILVTDPILL 333 (706)
Q Consensus 319 ~gs~IivTTR~~~v~ 333 (706)
|..||++|.+-...
T Consensus 189 -g~tIl~vtHDL~~v 202 (254)
T COG1121 189 -GKTVLMVTHDLGLV 202 (254)
T ss_pred -CCEEEEEeCCcHHh
Confidence 89999999987554
No 174
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.42 E-value=0.016 Score=62.60 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=36.9
Q ss_pred ccccccccccHHHHHHHHhcC-----------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 184 WLDVSEFERGREELFDLLIEG-----------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.++.|.+..+++|.+.+... -...+-|.++|.+|.|||++|+.+.+
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344899998888887766311 02457788999999999999999998
No 175
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.40 E-value=0.011 Score=59.52 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=57.7
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCcccc----CCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc------c-cC
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFY----FDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV------I-IG 274 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~------~-~~ 274 (706)
..-.++.|+|.+|+|||+||.+++-....... -..++|++....++..++. ++++..+....... . .+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 45689999999999999999999753222222 3578999988877765543 34444333211100 0 01
Q ss_pred C-CHHHHHHHHHHHhcC--CceEEEEccCCC
Q 045386 275 E-DYHLKKSILRDYLTN--KKYFIVRDDVFN 302 (706)
Q Consensus 275 ~-~~~~~~~~l~~~L~~--kr~LlVlDdvw~ 302 (706)
. +..++...+.+.+.. +--|||+|-+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1 223344555555533 566999999853
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.39 E-value=0.017 Score=69.09 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=68.1
Q ss_pred cccccccHHHHHHHHhcC-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDI 259 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 259 (706)
++|.+..++.+.+.+... +....++.++|..|+|||++|+.+.. .....-...+.+..+.-.+. .. .
T Consensus 567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~-~~---~ 640 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEK-HS---V 640 (852)
T ss_pred cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhccc-ch---H
Confidence 899999999999988642 12246788999999999999999987 32211122233333322111 11 1
Q ss_pred HHhcCCCCCCccccCC-CHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCC
Q 045386 260 INSLMPPSRARVIIGE-DYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDK 317 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~ 317 (706)
..-++.+.. .... ....+...++. ....+|+||++.. +.+.+..+...+..+
T Consensus 641 ~~l~g~~~g---~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g 694 (852)
T TIGR03346 641 ARLIGAPPG---YVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDG 694 (852)
T ss_pred HHhcCCCCC---ccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcC
Confidence 111222111 0011 11223333322 2234899999987 678888888877543
No 177
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.38 E-value=0.011 Score=67.42 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=40.2
Q ss_pred CCCccccccccccHHHHHHHHhcCC---CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGP---SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~---~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+....+++|-++.++++..++.... ...+++.++|.+|+||||+++.+..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3333449999999999999987542 2346799999999999999999998
No 178
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.37 E-value=0.0092 Score=65.61 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=56.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
..-+-|+|..|+|||+|++.+.+ ++...-..+++++ ...+...+...+... . .+.+++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~---------~----~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG---------E----MQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc---------h----HHHHHHH
Confidence 45688999999999999999998 4443322344543 344555555554321 1 1234444
Q ss_pred hcCCceEEEEccCCC-C--hhhHHHHHhhcCC-CCCCcEEEEeeCC
Q 045386 288 LTNKKYFIVRDDVFN-D--SDIWDDLEEVLPD-KQNGSRVLILVTD 329 (706)
Q Consensus 288 L~~kr~LlVlDdvw~-~--~~~~~~l~~~l~~-~~~gs~IivTTR~ 329 (706)
+. +.-+|++||+.. . ....+.+...+.. ...|..||+||..
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 43 344788999866 1 1112333333321 1235678888754
No 179
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.36 E-value=0.0024 Score=56.73 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=20.1
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 180
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.036 Score=59.32 Aligned_cols=137 Identities=11% Similarity=0.019 Sum_probs=75.8
Q ss_pred ccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC----CCcccc-C-------------CcceEEEec
Q 045386 186 DVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN----NHVKFY-F-------------DCLAWVRVS 247 (706)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~-F-------------~~~~wv~vs 247 (706)
+++|-+..+..+.+.+..+. -...+-++|..|+||+|+|..+... ...... + ..+-|+...
T Consensus 20 ~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 39999999999999887753 2346889999999999999666552 100000 0 000011111
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHHhc-----CCceEEEEccCCC-ChhhHHHHHhhcCCCCCC
Q 045386 248 IGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILRDYLT-----NKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNG 320 (706)
Q Consensus 248 ~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~-----~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~g 320 (706)
..+|+..+.... ...... .... ..+++ ..+.+++. +++-++|+||+.. +......+...+..-..+
T Consensus 99 ~HPDl~~i~~~~----~~~~~~--~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 99 AHGGLLTLERSW----NEKGKR--LRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred CCCCeEEEeccc----cccccc--ccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 111111100000 000000 0011 33442 23333432 4566899999987 677778888777766567
Q ss_pred cEEEEeeCCc
Q 045386 321 SRVLILVTDP 330 (706)
Q Consensus 321 s~IivTTR~~ 330 (706)
+.+|++|.+.
T Consensus 172 ~~~IL~t~~~ 181 (365)
T PRK07471 172 SLFLLVSHAP 181 (365)
T ss_pred eEEEEEECCc
Confidence 7788888776
No 181
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.36 E-value=0.013 Score=69.94 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=67.8
Q ss_pred cccccccHHHHHHHHhcC-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDI 259 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 259 (706)
++|-+..++.|.+.+... +.....+-++|+.|+|||+||+.+.+ .+-..-...+-+..+.-.+... +
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~----~ 584 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHT----V 584 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcccccc----H
Confidence 899999999998887531 22245677899999999999999886 2211112233333333211111 1
Q ss_pred HHhcCCCCCCccccCCCHHHHHHHHHHHhcCCc-eEEEEccCCC-ChhhHHHHHhhcCCC
Q 045386 260 INSLMPPSRARVIIGEDYHLKKSILRDYLTNKK-YFIVRDDVFN-DSDIWDDLEEVLPDK 317 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdvw~-~~~~~~~l~~~l~~~ 317 (706)
.+-++.+.. .. +.++ ...+.+.++.++ .+|+||++.. +.+.++.+...+..+
T Consensus 585 ~~l~g~~~g----yv-g~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g 638 (821)
T CHL00095 585 SKLIGSPPG----YV-GYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDG 638 (821)
T ss_pred HHhcCCCCc----cc-CcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccC
Confidence 111221111 01 1111 113344455555 4888999987 677888888777643
No 182
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.36 E-value=0.0086 Score=70.49 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=36.5
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||+.++++++..|.... ..-+.++|.+|+|||++|+.+..
T Consensus 184 ~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 184 LIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred ccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 9999999999999887654 33456999999999999999987
No 183
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.35 E-value=0.0072 Score=72.05 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=36.6
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||+++++++++.|.... ..-+.++|.+|+|||++|+.+..
T Consensus 181 ~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 181 VIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence 9999999999999997654 33456999999999999999887
No 184
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.029 Score=62.91 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=64.3
Q ss_pred cccccccHHHHHHHHhcC----CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHh
Q 045386 187 VSEFERGREELFDLLIEG----PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINS 262 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~ 262 (706)
=.|.++.+++|+++|.-. .-+-.+++.||++|+|||.|++.+.. .....| +-+++..--|..+|
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEI------- 392 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEI------- 392 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHh-------
Confidence 679999999999998532 22457999999999999999999999 777776 23344444444432
Q ss_pred cCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC
Q 045386 263 LMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
.+... .-..+-+..+++.+++. +.+.=+++||.+..
T Consensus 393 -RGHRR--TYIGamPGrIiQ~mkka-~~~NPv~LLDEIDK 428 (782)
T COG0466 393 -RGHRR--TYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDK 428 (782)
T ss_pred -ccccc--cccccCChHHHHHHHHh-CCcCCeEEeechhh
Confidence 11110 00111233444444443 34566889998865
No 185
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.34 E-value=0.021 Score=61.98 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=60.7
Q ss_pred EEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhc
Q 045386 210 VIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYLT 289 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 289 (706)
++.|.|+-++||||+++.+.. ...+. .+++...+...-.. ...+......+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~---------------------~l~d~~~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRI---------------------ELLDLLRAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchh---------------------hHHHHHHHHHHhhc
Confidence 999999999999999977766 22222 44443322211000 11111112222222
Q ss_pred CCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 290 NKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 290 ~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
.++..|+||-|.. ...|......+.+.++. +|++|+-+...
T Consensus 93 ~~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itgsss~l 133 (398)
T COG1373 93 REKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITGSSSSL 133 (398)
T ss_pred cCCceEEEecccC-chhHHHHHHHHHccccc-eEEEECCchhh
Confidence 2778999999999 88999999888877766 89999855443
No 186
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.31 E-value=0.019 Score=68.55 Aligned_cols=118 Identities=17% Similarity=0.158 Sum_probs=66.1
Q ss_pred cccccccHHHHHHHHhcC-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDI 259 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 259 (706)
++|.+..++.+.+.+... +....++.++|..|+|||++|+.+.+ ..-..-...+.+..+.- .-. ..
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~-~~~----~~ 642 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMSEF-MEK----HS 642 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHh-hhh----hh
Confidence 889999988888887531 22235788999999999999999987 22111112233333221 111 11
Q ss_pred HHhcCCCCCCccccCCCHHHHHHHHHHHhcCC-ceEEEEccCCC-ChhhHHHHHhhcCC
Q 045386 260 INSLMPPSRARVIIGEDYHLKKSILRDYLTNK-KYFIVRDDVFN-DSDIWDDLEEVLPD 316 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdvw~-~~~~~~~l~~~l~~ 316 (706)
...+-+... +.. +.+. ...+.+.++.+ .-+|+||++.. +...+..+...+..
T Consensus 643 ~~~LiG~~p---gy~-g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 643 VSRLVGAPP---GYV-GYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred HHHHhCCCC---ccc-ccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 222222111 011 1111 11233333333 35899999986 57788888777754
No 187
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.31 E-value=0.061 Score=61.09 Aligned_cols=48 Identities=21% Similarity=0.095 Sum_probs=38.8
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+.+++|.+..++.+.+++..+. -...+-++|..|.||||+|+.+..
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344459999999999999987654 245667899999999999988876
No 188
>PRK06921 hypothetical protein; Provisional
Probab=96.31 E-value=0.0092 Score=60.98 Aligned_cols=37 Identities=19% Similarity=0.076 Sum_probs=28.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcccc-CCcceEEEe
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFY-FDCLAWVRV 246 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v 246 (706)
..-+.++|..|+|||+||..+.+ ++... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 56789999999999999999999 55443 234566653
No 189
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.30 E-value=0.013 Score=57.61 Aligned_cols=92 Identities=8% Similarity=-0.001 Sum_probs=55.0
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc---c-cCC-CHHHH
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV---I-IGE-DYHLK 280 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~---~-~~~-~~~~~ 280 (706)
+.-+++-|+|.+|+|||+++.++.. .....-..++|++... ++..++.+ +++.......... . .+. +....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 4568999999999999999998876 3333446789998865 66655444 3332200000000 0 011 22334
Q ss_pred HHHHHHHhcC-CceEEEEccCC
Q 045386 281 KSILRDYLTN-KKYFIVRDDVF 301 (706)
Q Consensus 281 ~~~l~~~L~~-kr~LlVlDdvw 301 (706)
...+.+.+.. +.-+||+|-+-
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 5555555544 45589999874
No 190
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.27 E-value=0.019 Score=64.53 Aligned_cols=100 Identities=13% Similarity=0.194 Sum_probs=57.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCC--cceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFD--CLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
...+.|+|..|+|||.|++.+++ .....+. .++++ +..++..++...+... .. ..++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yi------taeef~~el~~al~~~---------~~----~~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYV------SSEEFTNEFINSIRDG---------KG----DSFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEe------eHHHHHHHHHHHHHhc---------cH----HHHH
Confidence 44589999999999999999999 5544332 24455 3445555555444321 11 2233
Q ss_pred HHhcCCceEEEEccCCC--ChhhH-HHHHhhcCC-CCCCcEEEEeeCC
Q 045386 286 DYLTNKKYFIVRDDVFN--DSDIW-DDLEEVLPD-KQNGSRVLILVTD 329 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~--~~~~~-~~l~~~l~~-~~~gs~IivTTR~ 329 (706)
+.+.. -=+|||||+.. ....| +.+...+.. ...|..|||||..
T Consensus 373 ~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 373 RRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred HHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 33332 24788999976 12333 233333332 2335668888865
No 191
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.24 E-value=0.016 Score=57.89 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=53.7
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHh-cCCCCCCccccCC-CH---HHH
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINS-LMPPSRARVIIGE-DY---HLK 280 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~-l~~~~~~~~~~~~-~~---~~~ 280 (706)
+.-.++-|+|.+|+|||++|.++.. .....-..++|++.. .++..++. ++... +......-.-.+. +. .+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 4568999999999999999999887 333334568898876 55555433 23322 0000000000011 23 233
Q ss_pred HHHHHHHhcCCceEEEEccCC
Q 045386 281 KSILRDYLTNKKYFIVRDDVF 301 (706)
Q Consensus 281 ~~~l~~~L~~kr~LlVlDdvw 301 (706)
.+.+.+.+..+--++|+|.+-
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 444455555667799999974
No 192
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.21 E-value=0.047 Score=61.78 Aligned_cols=137 Identities=10% Similarity=-0.027 Sum_probs=75.3
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc---cCCcceEEEecCCCCHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF---YFDCLAWVRVSIGYYFGKILDD 258 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~i~~~ 258 (706)
..+.+++|-+..+..+.+++..+. -...+-++|..|+||||+|+.+.+.---.. .+.| ...++..+
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC------~~C~~C~~---- 81 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC------GECSSCKS---- 81 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC------ccchHHHH----
Confidence 344459999999999999997653 345688999999999999999887311111 1111 00001111
Q ss_pred HHHhcCCCCCCccccCC-CHHHHHHHH---HHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 259 IINSLMPPSRARVIIGE-DYHLKKSIL---RDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 259 il~~l~~~~~~~~~~~~-~~~~~~~~l---~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
|...-........+... ..+++.+.+ ... ..+++-++|+|++.. ....++.+...+......+.+|.+|..
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 10000000000000011 333333222 111 235666899999876 456788888887765566777766644
No 193
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.20 E-value=0.0083 Score=55.00 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=19.4
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+|-++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 194
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.19 E-value=0.0079 Score=57.48 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEE
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWV 244 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 244 (706)
...+|.++|+.|+||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356999999999999999999998 666666655555
No 195
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.19 E-value=0.022 Score=56.83 Aligned_cols=94 Identities=9% Similarity=0.091 Sum_probs=58.1
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccC------CcceEEEecCCCCHHHHHHHHHHhcCCCCCC---ccc-cCC
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF------DCLAWVRVSIGYYFGKILDDIINSLMPPSRA---RVI-IGE 275 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~---~~~-~~~ 275 (706)
+.-.++.|+|.+|+|||+||.++... ....- ..++|++....++..++. .+.+........ ... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45679999999999999999988763 22222 457889887777765543 333433222110 000 111
Q ss_pred -CHHHHHHHHHHHhc---C-CceEEEEccCCC
Q 045386 276 -DYHLKKSILRDYLT---N-KKYFIVRDDVFN 302 (706)
Q Consensus 276 -~~~~~~~~l~~~L~---~-kr~LlVlDdvw~ 302 (706)
+.+++...+.+... . +--|||+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 55666666666553 3 455999999854
No 196
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.18 E-value=0.045 Score=53.40 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=74.2
Q ss_pred cccccccHHHHHHHHh---cCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhc
Q 045386 187 VSEFERGREELFDLLI---EGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSL 263 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l 263 (706)
++|.|..++.+++--. .+ -.-.-|-+||.-|.||+.|++.+.+ ++....-. -|.|.+. |+.
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G-~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~-dl~---------- 125 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEG-LPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE-DLA---------- 125 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcC-CcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-HHh----------
Confidence 9999988888876432 22 2345678999999999999999999 55444332 3433322 000
Q ss_pred CCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC---CCCcEEEEeeCCc
Q 045386 264 MPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK---QNGSRVLILVTDP 330 (706)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~---~~gs~IivTTR~~ 330 (706)
++..+.+.|+. ..+||.|..||+.- +...+..++..+..+ .+...++..|.|.
T Consensus 126 ------------~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 126 ------------TLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------hHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 33333333332 35799999999976 377889999988754 3444555555554
No 197
>PRK04296 thymidine kinase; Provisional
Probab=96.15 E-value=0.011 Score=57.22 Aligned_cols=114 Identities=12% Similarity=-0.060 Sum_probs=65.3
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHH
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILRDY 287 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~ 287 (706)
.++-|+|..|.||||+|..... +...+-..++.+ ...++.......++++++..... ... ..+++...+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~---~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVF--KPAIDDRYGEGKVVSRIGLSREA---IPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEE--eccccccccCCcEecCCCCcccc---eEeCChHHHHHHHHh-
Confidence 4778899999999999988877 443332223333 22223333344566666543221 111 44556666655
Q ss_pred hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 288 LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 288 L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
..++.-+||+|.+.- +.++..++...+ ...|..||+|.++.+-
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 333445899999865 233233333332 2457889999988643
No 198
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.14 E-value=0.064 Score=50.41 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=69.1
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC----CCcc--------------ccCCcceEEEecCC--
Q 045386 190 FERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN----NHVK--------------FYFDCLAWVRVSIG-- 249 (706)
Q Consensus 190 r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~--------------~~F~~~~wv~vs~~-- 249 (706)
-++..+.+.+.+..+. -...+-++|..|+||+|+|..+.+. .... .......|+.-...
T Consensus 2 q~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp -HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred cHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 3445556666665543 3456789999999999999777652 1110 11222333322211
Q ss_pred -CCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEee
Q 045386 250 -YYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILV 327 (706)
Q Consensus 250 -~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTT 327 (706)
..++++- ++.+.+..... .+++=.+|+||+.. ....+..+...+.....++.+|++|
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~--------------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t 139 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS--------------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILIT 139 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T--------------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred hhhHHHHH-HHHHHHHHHHh--------------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 2222221 33333322211 23456889999987 5788889998888877889999999
Q ss_pred CCcc
Q 045386 328 TDPI 331 (706)
Q Consensus 328 R~~~ 331 (706)
++..
T Consensus 140 ~~~~ 143 (162)
T PF13177_consen 140 NNPS 143 (162)
T ss_dssp S-GG
T ss_pred CChH
Confidence 8764
No 199
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.048 Score=58.05 Aligned_cols=137 Identities=9% Similarity=0.084 Sum_probs=75.7
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc----cCCcceEEEecCCCCHHHHHHHHHHh
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF----YFDCLAWVRVSIGYYFGKILDDIINS 262 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~il~~ 262 (706)
++|-+.....+...+..+. -...+-|+|..|+||||+|..+.+. +-. .+... ....++.--...+.|...
T Consensus 25 l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TLADPDPASPVWRQIAQG 98 (351)
T ss_pred ccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence 9999999999999887653 3456889999999999999887762 211 01111 000011111122222211
Q ss_pred -------cCCCCCCcc-cc-CC-CHHHHHHHHHHHhc-----CCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEe
Q 045386 263 -------LMPPSRARV-II-GE-DYHLKKSILRDYLT-----NKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLIL 326 (706)
Q Consensus 263 -------l~~~~~~~~-~~-~~-~~~~~~~~l~~~L~-----~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivT 326 (706)
+..+..... .. .. ..+++. .+.+++. +++-++|+|++.. +....+.+...+........+|++
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 100000000 00 11 344433 3444443 4667899999987 566677777777654445666666
Q ss_pred eCCc
Q 045386 327 VTDP 330 (706)
Q Consensus 327 TR~~ 330 (706)
|...
T Consensus 178 t~~~ 181 (351)
T PRK09112 178 SHSS 181 (351)
T ss_pred ECCh
Confidence 6444
No 200
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.07 E-value=0.043 Score=50.48 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=56.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEe----cCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRV----SIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSI 283 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~ 283 (706)
-.+++|+|..|.|||||++.+...... ....+|+.- +--+. + .....+.. .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~~i~~~~~-----------l----------S~G~~~rv-~ 80 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTVKIGYFEQ-----------L----------SGGEKMRL-A 80 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeEEEEEEcc-----------C----------CHHHHHHH-H
Confidence 468999999999999999999874321 223333311 00000 1 10222333 3
Q ss_pred HHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcc
Q 045386 284 LRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPI 331 (706)
Q Consensus 284 l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 331 (706)
+...+-.+.-++++|+--. |......+...+... +..||++|.+..
T Consensus 81 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~ 128 (144)
T cd03221 81 LAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRY 128 (144)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence 4455555667889998766 555555665555433 246888887654
No 201
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.07 E-value=0.011 Score=70.39 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=36.8
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+..
T Consensus 189 ~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 189 VLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred ccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 9999999999999987654 34556999999999999999987
No 202
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.064 Score=57.00 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.++|+++|.+|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999988876
No 203
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.0025 Score=63.61 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=67.0
Q ss_pred ccccEEEecCCCCCcC--Ccccc-ccccCcEEEcccCCccc---cChhhcCCCCCcEEEccCCCC----Cccchhhcccc
Q 045386 528 KHLRVLNFGSAVLDQF--PPGLE-NLFLLKYLKLNIPSLKR---LPSLLCTLLNLETLEMPSSYI----DQSPEDIWMMQ 597 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~l--p~~~~-~L~~Lr~L~Ls~~~l~~---lP~~i~~L~~L~~L~L~~~~~----~~lP~~l~~L~ 597 (706)
..+..|.+.++.|... ...|+ ..++++.|+|.+|.|+. +-.-+.+|+.|++|+|+.|.+ ..+| --+.
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~ 121 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK 121 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc
Confidence 3455777788877643 23455 47899999999999874 443456899999999999954 4454 2456
Q ss_pred ccceeeecCccCC-----cchhcCCccCcccccccc
Q 045386 598 KLMHLNFGSITLP-----APPKNYSSSLKNLIFISA 628 (706)
Q Consensus 598 ~L~~L~l~~~~lp-----~~i~~~l~~L~~L~~~~~ 628 (706)
+|+.|-++++.+| ..+. .++.++.|.++.+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~-~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLD-DLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhh-cchhhhhhhhccc
Confidence 8899988766444 2244 6666677766655
No 204
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.04 E-value=0.035 Score=52.94 Aligned_cols=100 Identities=14% Similarity=0.006 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEE------EecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWV------RVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKK 281 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv------~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~ 281 (706)
-.+++|+|..|.|||||++.+..-... ....+++ .+.+... + .....+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~q~~~-----------L----------SgGq~qr- 79 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDEWDGITPVYKPQYID-----------L----------SGGELQR- 79 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC---CCcEEEECCEEEEEEcccCC-----------C----------CHHHHHH-
Confidence 459999999999999999999874221 2222222 1122211 0 1023333
Q ss_pred HHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CC-CcEEEEeeCCcce
Q 045386 282 SILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QN-GSRVLILVTDPIL 332 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~-gs~IivTTR~~~v 332 (706)
-.+...+..+.-+++||.--. |......+...+... .. |..||++|.+...
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 344555556677889998765 455555555554421 22 3668888876543
No 205
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.04 E-value=0.0042 Score=61.27 Aligned_cols=177 Identities=16% Similarity=0.142 Sum_probs=99.8
Q ss_pred cCcccccEEEecCCCCC-----cCCccccccccCcEEEcccC--C-cc-ccCh-------hhcCCCCCcEEEccCCCC-C
Q 045386 525 KKFKHLRVLNFGSAVLD-----QFPPGLENLFLLKYLKLNIP--S-LK-RLPS-------LLCTLLNLETLEMPSSYI-D 587 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~-----~lp~~~~~L~~Lr~L~Ls~~--~-l~-~lP~-------~i~~L~~L~~L~L~~~~~-~ 587 (706)
..+..+..++||||.|. .+...+.+-.+|+..+++.- . .+ .+|+ .+-++++||+.+||.|-+ .
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44778899999999976 35566777788999999863 2 11 3443 556789999999999943 3
Q ss_pred ccch----hhccccccceeeecCccC-Ccc---hhcC------------CccCcccccccccccCCC---CchhcCCCCC
Q 045386 588 QSPE----DIWMMQKLMHLNFGSITL-PAP---PKNY------------SSSLKNLIFISALNPSSC---TPDILDRLPS 644 (706)
Q Consensus 588 ~lP~----~l~~L~~L~~L~l~~~~l-p~~---i~~~------------l~~L~~L~~~~~~~~~~~---~~~~l~~L~~ 644 (706)
..|+ .|.+-+.|.||.+++..+ |-. |+.. -+.|++.....+....+. ....+.+-.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 4554 456778999999943322 211 2200 111222221111111110 0111333357
Q ss_pred CCeEEEEccCCcC---ccchHHhcCCCCCCcEEEEeeCCCCCccccC------CcccccccceEEeccc
Q 045386 645 VRTLRISGDLSYY---QSGVSKSLCELHKLECLKLVNESKPSWMVLS------EYQFPPSLIQLSLSIV 704 (706)
Q Consensus 645 L~~L~l~~~~~~~---~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~------~~~~p~~L~~L~L~~n 704 (706)
|+.+.+..|.... ..-+...+..+.+|+.|+|..|.. .... ...-.++|++|.+..|
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf---t~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF---TLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch---hhhhHHHHHHHhcccchhhhccccch
Confidence 7788887775111 111233445567888888887432 1111 1111245788887766
No 206
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.03 E-value=0.049 Score=51.45 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=61.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc-c--cCCc-ceEEEecCCCCH--HHHHHHHHHhcCCCCCCccccCCCHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK-F--YFDC-LAWVRVSIGYYF--GKILDDIINSLMPPSRARVIIGEDYHLKK 281 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~-~~wv~vs~~~~~--~~i~~~il~~l~~~~~~~~~~~~~~~~~~ 281 (706)
-.+++|+|..|.|||||++.+..-.... . .|+. .--..+.+.+.. ..+...+.-. ... .+.....+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~---~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD---VLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCC---CCCHHHHHHH
Confidence 4689999999999999999999843211 1 1221 001123333221 1233333210 111 1111334444
Q ss_pred HHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 282 SILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
. +...+-.+.=++++|.--. |......+...+... +..||++|.+...
T Consensus 101 ~-laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~ 150 (166)
T cd03223 101 A-FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSL 150 (166)
T ss_pred H-HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhH
Confidence 4 4444455666778887665 444455555544432 4678888877643
No 207
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.03 E-value=0.013 Score=64.92 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=36.1
Q ss_pred cccccccHHHHHHHHhcC-----------CCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 187 VSEFERGREELFDLLIEG-----------PSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+.|.+..+++|.+.+... -...+-|-++|.+|.|||++|+.+++.
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 889999999988876421 123556889999999999999999993
No 208
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0036 Score=61.68 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=59.6
Q ss_pred cccCcccccEEEecCCC--CC-cCCccccccccCcEEEcccCCccc---cChhhcCCCCCcEEEccCCCCCccch----h
Q 045386 523 FCKKFKHLRVLNFGSAV--LD-QFPPGLENLFLLKYLKLNIPSLKR---LPSLLCTLLNLETLEMPSSYIDQSPE----D 592 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~--l~-~lp~~~~~L~~Lr~L~Ls~~~l~~---lP~~i~~L~~L~~L~L~~~~~~~lP~----~ 592 (706)
-|..+++|+.|.++.|. +. .++.....+++|++|++++|+|.. ++ .+..+.||..||+.+|....+-. .
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHH
Confidence 35667788888888883 33 555555566888888888887753 22 34567788888888886655532 3
Q ss_pred hccccccceeee---cCccCCcch
Q 045386 593 IWMMQKLMHLNF---GSITLPAPP 613 (706)
Q Consensus 593 l~~L~~L~~L~l---~~~~lp~~i 613 (706)
|.-+++|.+|+- .....|...
T Consensus 139 f~ll~~L~~LD~~dv~~~Ea~~~~ 162 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVDGEEAPEAD 162 (260)
T ss_pred HHHhhhhccccccccCCccccccc
Confidence 556778888876 334444443
No 209
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.016 Score=56.25 Aligned_cols=76 Identities=21% Similarity=0.163 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEe-cCC-CCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRV-SIG-YYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSI 283 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~-~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~ 283 (706)
++.+|||-|.+|+||||+|+.++. .++.. ++.+ ++. |-...-.....+....... ..+. +.+-+.+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~-----~~~~I~~D~YYk~~~~~~~~~~~~~n~d---~p~A~D~dLl~~~ 76 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVE-----KVVVISLDDYYKDQSHLPFEERNKINYD---HPEAFDLDLLIEH 76 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcC-----cceEeeccccccchhhcCHhhcCCcCcc---ChhhhcHHHHHHH
Confidence 468999999999999999999998 55543 2221 111 1111111111112222222 1234 88889999
Q ss_pred HHHHhcCCc
Q 045386 284 LRDYLTNKK 292 (706)
Q Consensus 284 l~~~L~~kr 292 (706)
|...+.|++
T Consensus 77 L~~L~~g~~ 85 (218)
T COG0572 77 LKDLKQGKP 85 (218)
T ss_pred HHHHHcCCc
Confidence 999999987
No 210
>PRK06696 uridine kinase; Validated
Probab=96.01 E-value=0.0073 Score=60.18 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=33.7
Q ss_pred ccccHHHHHHHHhc-CCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 190 FERGREELFDLLIE-GPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 190 r~~~~~~i~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
|.+-+++|.+.+.. ...+..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 55667777777764 234688999999999999999999987
No 211
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.00 E-value=0.0051 Score=64.58 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=39.6
Q ss_pred cccccccHHHHHHHHhcC----CCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 187 VSEFERGREELFDLLIEG----PSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
++|.++.++++++++... +...+++.++|.+|+||||||+.+.+.
T Consensus 53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999753 235689999999999999999999883
No 212
>PRK06620 hypothetical protein; Validated
Probab=95.99 E-value=0.013 Score=57.84 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchhhHHHHHHHcC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+.+-|+|.+|+|||+|++.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999998874
No 213
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.97 E-value=0.013 Score=53.49 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=62.0
Q ss_pred ccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCc-cccCCcceEEEecCCCCHHHHHHHHHHhcCCC
Q 045386 188 SEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHV-KFYFDCLAWVRVSIGYYFGKILDDIINSLMPP 266 (706)
Q Consensus 188 vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~ 266 (706)
||.-....++.+.+..-.....-|-|.|..|.||+++|+.++..... ...|...-.. . .+ .+++.+
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~---~-~~-----~~~l~~---- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCA---S-LP-----AELLEQ---- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHH---C-TC-----HHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechh---h-Cc-----HHHHHH----
Confidence 45555666666666442223456789999999999999999985332 1223211000 0 00 111111
Q ss_pred CCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCC-CCCcEEEEeeCCcc
Q 045386 267 SRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDK-QNGSRVLILVTDPI 331 (706)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~~ 331 (706)
.+.--|+++|+.. +......+...+... ....|+|.||+..-
T Consensus 68 -----------------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l 111 (138)
T PF14532_consen 68 -----------------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDL 111 (138)
T ss_dssp -----------------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-C
T ss_pred -----------------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCH
Confidence 1445678999877 566667777766633 56779999987653
No 214
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.97 E-value=0.003 Score=37.52 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=9.7
Q ss_pred CcEEEcccCCccccChhhc
Q 045386 553 LKYLKLNIPSLKRLPSLLC 571 (706)
Q Consensus 553 Lr~L~Ls~~~l~~lP~~i~ 571 (706)
|++|+|++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 215
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.96 E-value=0.039 Score=51.45 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=28.6
Q ss_pred EEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC
Q 045386 210 VIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY 250 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 250 (706)
++.|+|.+|+||||+++.+.. .....-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcch
Confidence 468999999999999999987 333333457777665554
No 216
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.95 E-value=0.016 Score=56.54 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=60.2
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHH---HHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILD---DIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~---~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
.+|.|+|..|.||||+++.+.. .+.......+++ +..+.. .... .++.+- ....+.....+.++
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t-~e~~~E--~~~~~~~~~i~q~--------~vg~~~~~~~~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILT-IEDPIE--FVHESKRSLINQR--------EVGLDTLSFENALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEE-EcCCcc--ccccCccceeeec--------ccCCCccCHHHHHH
Confidence 4789999999999999998777 444333444443 222211 0000 011100 00002233456677
Q ss_pred HHhcCCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 286 DYLTNKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
..+....=.|++|.+.+ .+......... ..|..++.|+....+
T Consensus 69 ~aLr~~pd~ii~gEird-~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 69 AALRQDPDVILVGEMRD-LETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred HHhcCCcCEEEEcCCCC-HHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 77777777999999987 55554433332 345567777765543
No 217
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.92 E-value=0.014 Score=69.92 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=36.4
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||+.++.+++..|.... ..-+.++|.+|+|||++|+.+..
T Consensus 175 ~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 175 VIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 9999999999999997654 34455899999999999999887
No 218
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.92 E-value=0.078 Score=54.22 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHH
Q 045386 194 REELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKI 255 (706)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 255 (706)
++++..++..+ .-|-+.|.+|+|||++|+.+.. ..... .++++.+...+..++
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHH
Confidence 44455555433 2456899999999999999987 33222 334455554444444
No 219
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.064 Score=61.50 Aligned_cols=142 Identities=12% Similarity=0.021 Sum_probs=74.6
Q ss_pred CccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHh
Q 045386 183 HWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINS 262 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~ 262 (706)
.+.+++|.+..+..|..++..+. -...+-++|..|+||||+|+.+...---. .++... ...+..-...+.|...
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIAAG 87 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHhcC
Confidence 33449999999999988887653 23467789999999999999998731111 110000 0011111111222111
Q ss_pred cCCCCCCccccCC-CHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 263 LMPPSRARVIIGE-DYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 263 l~~~~~~~~~~~~-~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
............. ..+++.+.+... ..+++-++|+|++.. ....++.|...+........+|++|.+.
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 1110000000011 233333322211 124556889999876 4567888888777655556666655443
No 220
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.90 E-value=0.014 Score=68.16 Aligned_cols=115 Identities=13% Similarity=0.155 Sum_probs=66.2
Q ss_pred cccccccHHHHHHHHhcC-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDI 259 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 259 (706)
++|-++.++.|.+.+... +.....+-++|+.|+|||++|+.+.. ..... .+.+..+.-.+.. .+
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~~~---~i~id~se~~~~~----~~ 530 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALGIE---LLRFDMSEYMERH----TV 530 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhCCC---cEEeechhhcccc----cH
Confidence 789899999888887631 22356788999999999999999987 33222 2333333221111 11
Q ss_pred HHhcCCCCCCccccCCCHHHHHHHHHHHhcC-CceEEEEccCCC-ChhhHHHHHhhcCC
Q 045386 260 INSLMPPSRARVIIGEDYHLKKSILRDYLTN-KKYFIVRDDVFN-DSDIWDDLEEVLPD 316 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw~-~~~~~~~l~~~l~~ 316 (706)
.+-++.+.. .. .. +....+.+.++. ...+|+||++.. +.+.+..+...+..
T Consensus 531 ~~LiG~~~g----yv-g~-~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 531 SRLIGAPPG----YV-GF-DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred HHHcCCCCC----cc-cc-cccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 111222211 00 10 001123333333 346999999988 56777877777653
No 221
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.88 E-value=0.063 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.+...
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 222
>PRK07667 uridine kinase; Provisional
Probab=95.86 E-value=0.011 Score=57.40 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 194 REELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.|.+.+...+....+|+|-|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5667777766666678999999999999999999987
No 223
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.066 Score=56.58 Aligned_cols=122 Identities=12% Similarity=0.119 Sum_probs=72.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCcccc---------------------CCcceEEE
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFY---------------------FDCLAWVR 245 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---------------------F~~~~wv~ 245 (706)
++|-+....++..+.........-+-+.|+.|+||||+|..+.+. +-.. .+.+..+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 566677788888888754433345899999999999999888873 2211 11222232
Q ss_pred ecCCCC---HHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCc
Q 045386 246 VSIGYY---FGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGS 321 (706)
Q Consensus 246 vs~~~~---~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs 321 (706)
-|.... ..+..+++.+....... .++.-++++|++.. ..+.-..+...+......+
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 222222 12222333222221110 24677899999877 4555666666666666778
Q ss_pred EEEEeeCCc
Q 045386 322 RVLILVTDP 330 (706)
Q Consensus 322 ~IivTTR~~ 330 (706)
.+|++|...
T Consensus 141 ~~il~~n~~ 149 (325)
T COG0470 141 RFILITNDP 149 (325)
T ss_pred EEEEEcCCh
Confidence 888888743
No 224
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.81 E-value=0.02 Score=58.25 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=58.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccC----CcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc-c---cCC-CH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYF----DCLAWVRVSIGYYFGKILDDIINSLMPPSRARV-I---IGE-DY 277 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~-~---~~~-~~ 277 (706)
.-.++=|+|.+|+|||.|+-+++-...+.... ..++|++-...|..+++. +|+++.+....+.. + ... +.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 45799999999999999998887544443222 248999988889888775 57776543321100 0 011 34
Q ss_pred HHHH---HHHHHHhc-CCceEEEEccCCC
Q 045386 278 HLKK---SILRDYLT-NKKYFIVRDDVFN 302 (706)
Q Consensus 278 ~~~~---~~l~~~L~-~kr~LlVlDdvw~ 302 (706)
+++. ..+...+. .+=-|||+|.+-.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHH
Confidence 4443 33444443 3455999998743
No 225
>PRK06762 hypothetical protein; Provisional
Probab=95.80 E-value=0.047 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 226
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.034 Score=63.97 Aligned_cols=114 Identities=20% Similarity=0.322 Sum_probs=75.1
Q ss_pred cccccccHHHHHHHHhcC-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC---CcceEEEecCCCCHHHHH
Q 045386 187 VSEFERGREELFDLLIEG-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF---DCLAWVRVSIGYYFGKIL 256 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~i~ 256 (706)
++|-+..++.+.+.+... +....+.-.+|+.|||||.||+.+.. ..| +..+-+ |+.+..
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~------DMSEy~ 561 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRI------DMSEYM 561 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceee------chHHHH
Confidence 999999999998888532 33567888899999999999998876 223 222222 444433
Q ss_pred HH-HHHhcCCCCCCccccCC-CHHHHHHHHHHHhcCCce-EEEEccCCC-ChhhHHHHHhhcCCC
Q 045386 257 DD-IINSLMPPSRARVIIGE-DYHLKKSILRDYLTNKKY-FIVRDDVFN-DSDIWDDLEEVLPDK 317 (706)
Q Consensus 257 ~~-il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~~kr~-LlVlDdvw~-~~~~~~~l~~~l~~~ 317 (706)
.+ -++.|-+..+ .. ..++ -..|-+..+.|.| .|.||.|.. +++..+-+...|.++
T Consensus 562 EkHsVSrLIGaPP-----GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 562 EKHSVSRLIGAPP-----GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHhCCCC-----CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 21 2223322211 12 3333 4456677778888 777999988 688888888888754
No 227
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.76 E-value=0.035 Score=54.00 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=44.8
Q ss_pred EEEEEcCCCchhhHHHHHHHcCCCcccc-CCc---ceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHH
Q 045386 210 VIAILDSNGFDKTVFAADIYNNNHVKFY-FDC---LAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSIL 284 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~---~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l 284 (706)
||+|.|.+|+||||+|+.+.. ..... +.+ ...+.. ..+....-..+.-........ ...... +.+.+.+.|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~-~~~p~a~d~~~l~~~l 76 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSL-DDFYDDYHLRDRKGRGENRYN-FDHPDAFDFDLLKEDL 76 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEG-GGGBHHHHHHHHHHHCTTTSS-TTSGGGBSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEee-cccccccchhhHhhccccccC-CCCccccCHHHHHHHH
Confidence 799999999999999999988 44422 221 222222 222222222222222111110 002234 888888888
Q ss_pred HHHhcCCceEE
Q 045386 285 RDYLTNKKYFI 295 (706)
Q Consensus 285 ~~~L~~kr~Ll 295 (706)
+...+++..-+
T Consensus 77 ~~L~~g~~i~~ 87 (194)
T PF00485_consen 77 KALKNGGSIEI 87 (194)
T ss_dssp HHHHTTSCEEE
T ss_pred HHHhCCCcccc
Confidence 88777776543
No 228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.034 Score=52.87 Aligned_cols=117 Identities=9% Similarity=0.052 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecC--CCCHHHHHHHHHHhcCCCCCCcccc--------CCCH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSI--GYYFGKILDDIINSLMPPSRARVII--------GEDY 277 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~il~~l~~~~~~~~~~--------~~~~ 277 (706)
-.+++|+|..|.|||||.+.++.-.. .....+++.-.. ....... -..++.-...+.-+ -+.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 46899999999999999999998422 222333321100 0011111 01111000000000 0011
Q ss_pred HHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcc
Q 045386 278 HLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPI 331 (706)
Q Consensus 278 ~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 331 (706)
+...-.+...+-.+.-+++||.-.. |......+...+..-..+..||++|.+..
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 156 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 1222334555556677899998776 55555555555543223577888887754
No 229
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.74 E-value=0.018 Score=60.00 Aligned_cols=90 Identities=13% Similarity=-0.002 Sum_probs=57.1
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHH
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSIL 284 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l 284 (706)
+.-+++-|+|.+|+||||||.++.. .....=..++||+.-+.++.. .+++++.....-.-... +.++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4568999999999999999988776 333333457788776665543 34555543221000111 556666666
Q ss_pred HHHhc-CCceEEEEccCCC
Q 045386 285 RDYLT-NKKYFIVRDDVFN 302 (706)
Q Consensus 285 ~~~L~-~kr~LlVlDdvw~ 302 (706)
...++ +.--+||+|-|-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 66554 3566899998753
No 230
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.74 E-value=0.097 Score=61.73 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHccccCCCCCCccccCC-----cccccccCCCCC--------ccc-cccccccHHHHHHHHhc----
Q 045386 142 FGLHSKIMDIRDRMQQLPPGDNGFDITEQS-----NKIIRLLSKGQH--------WLD-VSEFERGREELFDLLIE---- 203 (706)
Q Consensus 142 ~~i~~~i~~l~~~l~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~--------~~~-~vGr~~~~~~i~~~L~~---- 203 (706)
..+.+++.+-.+|++.+......|++...- +.++........ ... .+|.++.+++|+++|..
T Consensus 265 ~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~ 344 (784)
T PRK10787 265 KEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV 344 (784)
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc
Confidence 445556666666777766666666544210 111110000000 011 89999999999988863
Q ss_pred CCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 204 GPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 204 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
+...-.++.++|.+|+||||+|+.+.. .....|
T Consensus 345 ~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~ 377 (784)
T PRK10787 345 NKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY 377 (784)
T ss_pred ccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 122456899999999999999999997 444433
No 231
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.73 E-value=0.031 Score=52.65 Aligned_cols=113 Identities=12% Similarity=-0.047 Sum_probs=62.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecC--CCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSI--GYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
-.+++|+|..|.|||||.+.+.... ......+++.-.. ..+..+..+ +.++.-. ++. .-+...-.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~----qLS-~G~~qrl~la 94 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY----QLS-VGERQMVEIA 94 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE----ecC-HHHHHHHHHH
Confidence 4689999999999999999998732 2233444442111 111111110 1111000 011 2222333455
Q ss_pred HHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcc
Q 045386 286 DYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPI 331 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~ 331 (706)
..+-.+.-++++|+.-. |......+...+..- ..|..||++|.+..
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 55556677889998776 555555665555432 34677888888764
No 232
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.70 E-value=0.02 Score=59.75 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=57.2
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHH
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSIL 284 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l 284 (706)
+.-+++-|+|.+|+||||||.+++- .....-..++||+.-+.++.. .+++++.....-.-... +.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 4567999999999999999998876 333334568888877666643 34444433211000011 556666666
Q ss_pred HHHhcC-CceEEEEccCCC
Q 045386 285 RDYLTN-KKYFIVRDDVFN 302 (706)
Q Consensus 285 ~~~L~~-kr~LlVlDdvw~ 302 (706)
...++. .--+||+|-|-.
T Consensus 126 ~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHhccCCCEEEEcchHh
Confidence 666544 556899998753
No 233
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.68 E-value=0.067 Score=50.43 Aligned_cols=122 Identities=14% Similarity=0.186 Sum_probs=72.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEE---------------------EecC-----------------
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWV---------------------RVSI----------------- 248 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---------------------~vs~----------------- 248 (706)
.-..+-++|.+|.||||+.+.+|..++-.. ..+|+ .|-|
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 356889999999999999999998654321 11111 0111
Q ss_pred -------CCCHHHHHHHHHHhcCCCCCCccccCC---CHHHHHHHHHHHhcCCceEEEEccCCC--C-hhhHHHHHhhcC
Q 045386 249 -------GYYFGKILDDIINSLMPPSRARVIIGE---DYHLKKSILRDYLTNKKYFIVRDDVFN--D-SDIWDDLEEVLP 315 (706)
Q Consensus 249 -------~~~~~~i~~~il~~l~~~~~~~~~~~~---~~~~~~~~l~~~L~~kr~LlVlDdvw~--~-~~~~~~l~~~l~ 315 (706)
+..+++-..+.++..+...... .++. .-++..-.|...+-++.-+|+-|.=-- | ...|+ +...|.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~-~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~-im~lfe 181 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKAR-ALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-IMRLFE 181 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhh-cCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHH-HHHHHH
Confidence 1123333444455555443321 1111 344445566777778888888885332 3 44454 444444
Q ss_pred -CCCCCcEEEEeeCCccee
Q 045386 316 -DKQNGSRVLILVTDPILL 333 (706)
Q Consensus 316 -~~~~gs~IivTTR~~~v~ 333 (706)
-+..|..||++|.+..+.
T Consensus 182 einr~GtTVl~ATHd~~lv 200 (223)
T COG2884 182 EINRLGTTVLMATHDLELV 200 (223)
T ss_pred HHhhcCcEEEEEeccHHHH
Confidence 466799999999987654
No 234
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.68 E-value=0.087 Score=52.07 Aligned_cols=125 Identities=11% Similarity=0.092 Sum_probs=64.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc-c--cCCc-----------ceEEEecC----CCCH---------------HH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK-F--YFDC-----------LAWVRVSI----GYYF---------------GK 254 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~-----------~~wv~vs~----~~~~---------------~~ 254 (706)
-.+++|+|..|.|||||++.+....... . .|+. +.++.-.. ..++ .+
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 116 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQ 116 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHH
Confidence 4689999999999999999999753211 0 1111 22332110 0111 11
Q ss_pred HHHHHHHhcCCCCCCccccCC--CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEEEeeCC
Q 045386 255 ILDDIINSLMPPSRARVIIGE--DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVLILVTD 329 (706)
Q Consensus 255 i~~~il~~l~~~~~~~~~~~~--~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~IivTTR~ 329 (706)
....++..++........... .-+...-.+...+-.+.-+++||.--. |....+.+...+.. ...|..||++|.+
T Consensus 117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 117 MPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred HHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 223344444432110001111 112223344444445566889998766 45555555555542 2346678899887
Q ss_pred cce
Q 045386 330 PIL 332 (706)
Q Consensus 330 ~~v 332 (706)
...
T Consensus 197 ~~~ 199 (214)
T PRK13543 197 AYA 199 (214)
T ss_pred hhh
Confidence 643
No 235
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.67 E-value=0.042 Score=53.68 Aligned_cols=118 Identities=19% Similarity=0.122 Sum_probs=61.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCC--C-ccc--cCCc------------ceEE-EecCCCCH--HHHHHHHHHhcCCCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNN--H-VKF--YFDC------------LAWV-RVSIGYYF--GKILDDIINSLMPPS 267 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~--~-~~~--~F~~------------~~wv-~vs~~~~~--~~i~~~il~~l~~~~ 267 (706)
-.+++|+|..|.|||||.+.+.... . ... .|+. +..+ .+.+.+.. .....+++......
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~- 104 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEG- 104 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcccc-
Confidence 4699999999999999999998852 1 111 0110 0011 12232211 11122222111100
Q ss_pred CCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcce
Q 045386 268 RARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPIL 332 (706)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v 332 (706)
+. .-+...-.+...+-.+.-+++||+.-. |......+...+..- ..|..||++|.+...
T Consensus 105 -----LS-~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~ 166 (200)
T cd03217 105 -----FS-GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166 (200)
T ss_pred -----CC-HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 11 222233345555556677899998766 555555555544422 236778888877643
No 236
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.0093 Score=59.49 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=42.4
Q ss_pred CccccccccccHHHHHHHHhc---CCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 183 HWLDVSEFERGREELFDLLIE---GPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
.+.+++|.++-++++.=.+.. .+..+--|-++|++|.||||||.-+.+ +....+
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~ 80 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL 80 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe
Confidence 344499999988888666653 245688899999999999999999999 555544
No 237
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.66 E-value=0.065 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
No 238
>PRK08233 hypothetical protein; Provisional
Probab=95.64 E-value=0.034 Score=53.28 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999987
No 239
>CHL00176 ftsH cell division protein; Validated
Probab=95.59 E-value=0.063 Score=61.65 Aligned_cols=95 Identities=13% Similarity=0.225 Sum_probs=55.9
Q ss_pred CccccccccccHHHHHHHH---hcCC-------CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCH
Q 045386 183 HWLDVSEFERGREELFDLL---IEGP-------SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYF 252 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L---~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 252 (706)
.+.++.|.++.++++.+.+ ...+ ...+-|.++|.+|.|||+||+.++.. ... -|+.++..
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~s--- 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISGS--- 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccHH---
Confidence 3444889877766665543 3221 12456899999999999999999883 322 23333321
Q ss_pred HHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCC
Q 045386 253 GKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVF 301 (706)
Q Consensus 253 ~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw 301 (706)
++.. ...+. ....+...+.....+.+++|++||+.
T Consensus 251 -~f~~----~~~g~---------~~~~vr~lF~~A~~~~P~ILfIDEID 285 (638)
T CHL00176 251 -EFVE----MFVGV---------GAARVRDLFKKAKENSPCIVFIDEID 285 (638)
T ss_pred -HHHH----Hhhhh---------hHHHHHHHHHHHhcCCCcEEEEecch
Confidence 1110 00000 22334444555556778999999985
No 240
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.59 E-value=0.047 Score=51.94 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecC--CCCHHHHHHHHHHhcCCCCCCcc--------ccCC-C
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSI--GYYFGKILDDIINSLMPPSRARV--------IIGE-D 276 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~il~~l~~~~~~~~--------~~~~-~ 276 (706)
-.+++|+|..|.|||||.+.+..-.. .....+++.-.. ..+..... ..++.-..+.. ..-+ .
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHH
Confidence 45899999999999999999997421 122222221100 01111111 11110000000 0001 2
Q ss_pred HHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEEEeeCCcc
Q 045386 277 YHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVLILVTDPI 331 (706)
Q Consensus 277 ~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~ 331 (706)
..+.. .+...+-.+.-+++||+... |......+...+.. ...|..||++|.+..
T Consensus 101 ~~qrv-~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 101 QRQRL-GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHHH-HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 33333 34444455566889998876 55555555554442 224778888887764
No 241
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.57 E-value=0.04 Score=53.56 Aligned_cols=124 Identities=14% Similarity=0.152 Sum_probs=61.6
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEec----CC--C---CHH-------
Q 045386 190 FERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVS----IG--Y---YFG------- 253 (706)
Q Consensus 190 r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~--~---~~~------- 253 (706)
+..+-...++.|.. ..++.+.|.+|.|||.||....-+.-..+.|+.++++.-. +. | +..
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 44555667777772 5699999999999999998777654334778777766311 11 0 100
Q ss_pred HHHHHHHHhcCCCCCCccccCCCHHHHHHH------HHHHhcCC---ceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEE
Q 045386 254 KILDDIINSLMPPSRARVIIGEDYHLKKSI------LRDYLTNK---KYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRV 323 (706)
Q Consensus 254 ~i~~~il~~l~~~~~~~~~~~~~~~~~~~~------l~~~L~~k---r~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~I 323 (706)
.=+.+.++.+.... ..+.+.+. --.+++|+ ..+||+|...+ ...++..+.. -.+.||||
T Consensus 81 ~p~~d~l~~~~~~~--------~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~ski 149 (205)
T PF02562_consen 81 RPIYDALEELFGKE--------KLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKI 149 (205)
T ss_dssp HHHHHHHTTTS-TT--------CHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EE
T ss_pred HHHHHHHHHHhChH--------hHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEE
Confidence 01111222221110 22222210 01234453 45999999987 4555555544 44678999
Q ss_pred EEeeC
Q 045386 324 LILVT 328 (706)
Q Consensus 324 ivTTR 328 (706)
|++=-
T Consensus 150 i~~GD 154 (205)
T PF02562_consen 150 IITGD 154 (205)
T ss_dssp EEEE-
T ss_pred EEecC
Confidence 99843
No 242
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.039 Score=60.60 Aligned_cols=92 Identities=15% Similarity=0.228 Sum_probs=63.8
Q ss_pred cccccccHHHHHHHHhcC---C-------CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHH
Q 045386 187 VSEFERGREELFDLLIEG---P-------SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKIL 256 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~---~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 256 (706)
+=|.+....++.+++..- + ...+=|-++|++|+|||.||+.+.+ +..-.| +.++-+
T Consensus 192 iGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp------- 257 (802)
T KOG0733|consen 192 IGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP------- 257 (802)
T ss_pred ccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch-------
Confidence 888999888888877531 1 2356678999999999999999999 555444 333332
Q ss_pred HHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC
Q 045386 257 DDIINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
+|+....+. +++.+.+...+.-..-.+++++|++.-
T Consensus 258 -eivSGvSGE---------SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 -EIVSGVSGE---------SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred -hhhcccCcc---------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 333333332 555566666666667899999999864
No 243
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.56 E-value=0.051 Score=54.38 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.6
Q ss_pred CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 205 PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 205 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+..+|+|.|.+|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999999987
No 244
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.56 E-value=0.069 Score=56.28 Aligned_cols=96 Identities=9% Similarity=0.032 Sum_probs=59.1
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccC----CcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc------ccCC
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF----DCLAWVRVSIGYYFGKILDDIINSLMPPSRARV------IIGE 275 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~------~~~~ 275 (706)
+.-.++-|+|.+|+|||+++.+++-.......+ ..++||+....|+..++. ++++.++....... ....
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCC
Confidence 457899999999999999999887643222111 368999998888887764 44555544321100 0011
Q ss_pred --CHHHHHHHHHHHhcC--CceEEEEccCCC
Q 045386 276 --DYHLKKSILRDYLTN--KKYFIVRDDVFN 302 (706)
Q Consensus 276 --~~~~~~~~l~~~L~~--kr~LlVlDdvw~ 302 (706)
....+...+...+.. +--|||+|-+-.
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 122334555666654 334899998743
No 245
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.54 E-value=0.056 Score=56.55 Aligned_cols=96 Identities=9% Similarity=0.085 Sum_probs=59.5
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccc----cCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc-c---cCC-C
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKF----YFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV-I---IGE-D 276 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~-~---~~~-~ 276 (706)
+.-+++-|+|.+|+|||+|+.+++-...... .=..++||+.-..|+.+++. +++++++....... + ... +
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence 4568999999999999999988764323221 11368999998889888875 46677665432100 0 011 3
Q ss_pred HHHHH---HHHHHHhc-CCceEEEEccCCC
Q 045386 277 YHLKK---SILRDYLT-NKKYFIVRDDVFN 302 (706)
Q Consensus 277 ~~~~~---~~l~~~L~-~kr~LlVlDdvw~ 302 (706)
.++.. ..+...+. ++--|||+|-+-.
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 33333 34444443 3455899998753
No 246
>PTZ00301 uridine kinase; Provisional
Probab=95.51 E-value=0.014 Score=57.26 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=23.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
..+|+|.|.+|+||||||+.+.+ ++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~--~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS--ELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH--HHHhhc
Confidence 57999999999999999998876 444433
No 247
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.49 E-value=0.034 Score=56.44 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=47.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRD 286 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (706)
+..-+.++|.+|+|||.||..+.+ ++...=-.+.++ +..+++.++........ ....+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~------~~~el~~~Lk~~~~~~~------------~~~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFI------TAPDLLSKLKAAFDEGR------------LEEKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEE------EHHHHHHHHHHHHhcCc------------hHHHHHH
Confidence 466789999999999999999999 554321235555 44566666665554321 1222222
Q ss_pred HhcCCceEEEEccCCC
Q 045386 287 YLTNKKYFIVRDDVFN 302 (706)
Q Consensus 287 ~L~~kr~LlVlDdvw~ 302 (706)
.+. +-=||||||+..
T Consensus 164 ~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 164 ELK-KVDLLIIDDIGY 178 (254)
T ss_pred Hhh-cCCEEEEecccC
Confidence 221 234899999976
No 248
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.47 E-value=0.11 Score=50.55 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999875
No 249
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.054 Score=51.83 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999863
No 250
>PRK09354 recA recombinase A; Provisional
Probab=95.46 E-value=0.027 Score=59.23 Aligned_cols=90 Identities=12% Similarity=-0.000 Sum_probs=58.5
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHH
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSIL 284 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l 284 (706)
+.-+++-|+|.+|+||||||.++.. .....=..++||+.-..++.. .+++++.....-.-... +.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4568999999999999999998876 333333568888877777653 45555543221000111 556666666
Q ss_pred HHHhcC-CceEEEEccCCC
Q 045386 285 RDYLTN-KKYFIVRDDVFN 302 (706)
Q Consensus 285 ~~~L~~-kr~LlVlDdvw~ 302 (706)
...++. +--+||+|-|-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 666644 566899998753
No 251
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.45 E-value=0.21 Score=51.10 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=70.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEE---EecCCCCHHHHHHHHHHhcCCCCCC
Q 045386 193 GREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWV---RVSIGYYFGKILDDIINSLMPPSRA 269 (706)
Q Consensus 193 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~i~~~il~~l~~~~~~ 269 (706)
..+.++..|... ...+-++|+|..|.|||||.+.+... +.. ....+++ .|....+.. ++......-...
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~~-~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LST-GISQLGLRGKKVGIVDERS----EIAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cCC-CCceEEECCEEeecchhHH----HHHHHhcccccc
Confidence 455666666643 24678999999999999999999983 322 1223333 111111122 333222211111
Q ss_pred cc--ccCC--CHHHHHHHHHHHhc-CCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 270 RV--IIGE--DYHLKKSILRDYLT-NKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 270 ~~--~~~~--~~~~~~~~l~~~L~-~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
.. ..+. +... ..-+...+. ...=+|++|.+.. ...+..+...+. .|..||+||.+..+
T Consensus 169 ~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~-~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 169 DVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR-EEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred cccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc-HHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 00 1111 1111 222333333 4778999999987 766776666653 47789999987655
No 252
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.44 E-value=0.1 Score=51.34 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 253
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.071 Score=50.72 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=61.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEE-----------------ecCCCCH---HHHHHHHHHhcCCCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVR-----------------VSIGYYF---GKILDDIINSLMPPS 267 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-----------------vs~~~~~---~~i~~~il~~l~~~~ 267 (706)
-.+++|+|..|.|||||++.+..... .....+++. +.+.+.. ..+...+. +
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--L---- 96 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--L---- 96 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh--c----
Confidence 46899999999999999999987421 122233321 1111100 01111111 0
Q ss_pred CCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcce
Q 045386 268 RARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPIL 332 (706)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v 332 (706)
+.-+...-.+...+..+.=++++|+--. |......+...+... ..|..||++|.+...
T Consensus 97 -------S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~ 157 (173)
T cd03230 97 -------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE 157 (173)
T ss_pred -------CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 0112223345566667777899998776 555555555555432 236788999887643
No 254
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.032 Score=59.74 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=62.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRD 286 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (706)
....+-|+|..|.|||.|++.+.+ ....+......+++ +.+....+++..+... -.+..++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~~-------------~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRDN-------------EMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHhh-------------hHHHHHH
Confidence 478899999999999999999999 77666654333433 3344444444443322 2344455
Q ss_pred HhcCCceEEEEccCCC--ChhhH-HHHHhhcCC-CCCCcEEEEeeCCc
Q 045386 287 YLTNKKYFIVRDDVFN--DSDIW-DDLEEVLPD-KQNGSRVLILVTDP 330 (706)
Q Consensus 287 ~L~~kr~LlVlDdvw~--~~~~~-~~l~~~l~~-~~~gs~IivTTR~~ 330 (706)
.. .-=++++||++. ..+.| +.+...|.. ...|-.||+|++..
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~ 218 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRP 218 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCC
Confidence 54 333889999987 12222 333334432 23344899988554
No 255
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.42 E-value=0.11 Score=52.31 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=32.2
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v 332 (706)
.+...+-.+.-+++||..-. |....+.+...+..- ..|..||++|.+...
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 34555556677889998766 555555666555432 246778888877644
No 256
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.41 E-value=0.056 Score=54.16 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=71.9
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccc---cCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccc-cCC-CHHHH-
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKF---YFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVI-IGE-DYHLK- 280 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~-~~~-~~~~~- 280 (706)
+-.++++||.+|+||||+++.+..-.+-.. .|+..-+...+ .....+-..++++..+.....-.. ... +-.+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 357999999999999999999997332111 23322211122 223445566777777754321100 112 22232
Q ss_pred HHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCCcEEEEeeCCccee
Q 045386 281 KSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNGSRVLILVTDPILL 333 (706)
Q Consensus 281 ~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~ 333 (706)
.-.|...|.-+.-+||.|.--+ |...-..+...+.+ ...|-..+..|.+-.|+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv 173 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVV 173 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhh
Confidence 2356777788899999997655 33333334333332 23466677777776665
No 257
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.36 E-value=0.067 Score=53.02 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=51.0
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc-ccCC-CHHHH---
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV-IIGE-DYHLK--- 280 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~-~~~~-~~~~~--- 280 (706)
..-.++.|.|.+|+||||+|.++.. .....=..++|++....++ +-+++++........... -.+. +..++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 4568999999999999999999886 3322223567887655554 233333332100000000 0011 22222
Q ss_pred HHHHHHHhcCCceEEEEccCCC
Q 045386 281 KSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 281 ~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
...+...+..+.-+||+|-+-.
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~~ 114 (218)
T cd01394 93 IQETETFADEKVDLVVVDSATA 114 (218)
T ss_pred HHHHHHHHhcCCcEEEEechHH
Confidence 3344555554556889998743
No 258
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.34 E-value=0.071 Score=56.32 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=59.7
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccc----cCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc-c---cCC-C
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKF----YFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV-I---IGE-D 276 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~-~---~~~-~ 276 (706)
+.-+++-|+|.+|+|||+|+.+++-...... .-..++||+--..|..+++.+ ++++++....... + ... +
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 4568889999999999999988864323221 124689999999999888654 6677665432100 0 111 4
Q ss_pred HHHHHH---HHHHHhcC-CceEEEEccCCC
Q 045386 277 YHLKKS---ILRDYLTN-KKYFIVRDDVFN 302 (706)
Q Consensus 277 ~~~~~~---~l~~~L~~-kr~LlVlDdvw~ 302 (706)
.+++.. .+...+.. +--|||+|-+-.
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 444333 33334433 345889998753
No 259
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.34 E-value=0.15 Score=49.79 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=64.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc---------------cC-CcceEEEec----CCCCHHH-------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF---------------YF-DCLAWVRVS----IGYYFGK------------- 254 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------~F-~~~~wv~vs----~~~~~~~------------- 254 (706)
-.+++|+|..|.|||||++.+........ .+ ..+.|+.-. ...++.+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~ 106 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAV 106 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchH
Confidence 46999999999999999999987532110 01 112222110 1112211
Q ss_pred HHHHHHHhcCCCCCCccccCC--CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEEEeeCC
Q 045386 255 ILDDIINSLMPPSRARVIIGE--DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVLILVTD 329 (706)
Q Consensus 255 i~~~il~~l~~~~~~~~~~~~--~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~IivTTR~ 329 (706)
-..++++.++........... .-+...-.+...+-.+.-++++|.--. |...-+.+...+.. ...|..||++|.+
T Consensus 107 ~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 186 (200)
T PRK13540 107 GITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186 (200)
T ss_pred HHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 123344444332110001111 122223344555555667889998766 44444555555543 2347789999987
Q ss_pred cc
Q 045386 330 PI 331 (706)
Q Consensus 330 ~~ 331 (706)
..
T Consensus 187 ~~ 188 (200)
T PRK13540 187 DL 188 (200)
T ss_pred ch
Confidence 64
No 260
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.33 E-value=0.15 Score=49.87 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=64.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCc-cc--cCC-----------cceEEEecCCC-------CH--------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHV-KF--YFD-----------CLAWVRVSIGY-------YF-------------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~-----------~~~wv~vs~~~-------~~-------------- 252 (706)
-.+++|+|..|.|||||.+.++.-..- .. .|+ .+.|+ .+.+ ++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~--~q~~~~~~~~~tv~e~l~~~~~~~~~~ 103 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYV--MQDVDYQLFTDSVREELLLGLKELDAG 103 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEE--ecChhhhhhhccHHHHHhhhhhhcCcc
Confidence 469999999999999999999874211 00 011 11122 2221 00
Q ss_pred HHHHHHHHHhcCCCCCCccccCC---CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEe
Q 045386 253 GKILDDIINSLMPPSRARVIIGE---DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLIL 326 (706)
Q Consensus 253 ~~i~~~il~~l~~~~~~~~~~~~---~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivT 326 (706)
.+-..++++.++........... ...+.. .+...+-.+.-+++||.--. |....+.+...+..- ..|..||++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv-~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 182 (205)
T cd03226 104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRL-AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVI 182 (205)
T ss_pred HHHHHHHHHHcCCchhcCCCchhCCHHHHHHH-HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 01223444554443211001111 222333 34444555677899998766 555555555555432 346678888
Q ss_pred eCCcc
Q 045386 327 VTDPI 331 (706)
Q Consensus 327 TR~~~ 331 (706)
|.+..
T Consensus 183 sH~~~ 187 (205)
T cd03226 183 THDYE 187 (205)
T ss_pred eCCHH
Confidence 87754
No 261
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.32 E-value=0.033 Score=65.07 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=36.2
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||++++++++..|.... ..-+-++|.+|+|||++|+.+..
T Consensus 188 liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 188 LIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 9999999999999998743 23445899999999999999987
No 262
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.32 E-value=0.17 Score=48.80 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=76.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEE-------------------ecCCC------------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVR-------------------VSIGY------------------ 250 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-------------------vs~~~------------------ 250 (706)
-.|+.|+|++|+|||||.+-+..-+.... ..+||. |-|.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 56999999999999999999986544322 122221 11222
Q ss_pred -------CHHHHHHHHHHhcCCCCCCccccCC--CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CC
Q 045386 251 -------YFGKILDDIINSLMPPSRARVIIGE--DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQ 318 (706)
Q Consensus 251 -------~~~~i~~~il~~l~~~~~~~~~~~~--~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~ 318 (706)
..++...++++.++.......-... .-++..-.|.+.|.-+.-++.+|..-+ |++.-.++...... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 3445666667777765443211111 334444567778888888899999988 56655555554443 35
Q ss_pred CCcEEEEeeCCccee
Q 045386 319 NGSRVLILVTDPILL 333 (706)
Q Consensus 319 ~gs~IivTTR~~~v~ 333 (706)
.|-..||.|..-.-|
T Consensus 185 eGmTMivVTHEM~FA 199 (240)
T COG1126 185 EGMTMIIVTHEMGFA 199 (240)
T ss_pred cCCeEEEEechhHHH
Confidence 577788888765444
No 263
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.32 E-value=0.018 Score=63.82 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=39.2
Q ss_pred ccccccccHHHHHHHHhc----CCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 186 DVSEFERGREELFDLLIE----GPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+++|.++.+++|++.|.. -+..-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 389999999999999932 234568999999999999999999998
No 264
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.32 E-value=0.081 Score=53.72 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc-c--cCCc---ceEEEecCCC--------CHH-----------HHHHHHHHh
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK-F--YFDC---LAWVRVSIGY--------YFG-----------KILDDIINS 262 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~---~~wv~vs~~~--------~~~-----------~i~~~il~~ 262 (706)
-.+++|+|..|.|||||++.++.-.... . .++. +.++ .+.+ ++. +-...+++.
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v--~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYV--PQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKR 107 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEe--ccccccccccChhHHHHHhccccccHHHHHHHHHH
Confidence 4689999999999999999999742111 1 1111 2222 1111 111 112334444
Q ss_pred cCCCCCCccccCC-C-HHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcce
Q 045386 263 LMPPSRARVIIGE-D-YHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPIL 332 (706)
Q Consensus 263 l~~~~~~~~~~~~-~-~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v 332 (706)
++........... + -+...-.+...+-.+.-+++||.--. |...-..+...+..- ..|..||++|.+...
T Consensus 108 ~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 108 VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred cCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 4432110001111 1 12222334455555667899998776 444445554444321 226678888877643
No 265
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.28 E-value=0.025 Score=61.77 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=39.8
Q ss_pred CccccccccccHHHHHHHHhcC-----------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 183 HWLDVSEFERGREELFDLLIEG-----------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
.+.++.|.+..+++|.+.+.-. -...+-+.++|.+|.|||++|+.+++ +....|
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 3344889999999888876421 02345678999999999999999999 454444
No 266
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.27 E-value=0.023 Score=56.05 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=57.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
.+++.|+|..|.||||+.+.+...... .+.-.|+... ...+ ..+.++...++....-..... +...-.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l---a~~G~~v~a~-~~~~-~~~d~i~~~l~~~~si~~~~S-~f~~el~~l~~~ 102 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL---AHIGSFVPAD-SATI-GLVDKIFTRMSSRESVSSGQS-AFMIDLYQVSKA 102 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH---HhCCCeeEcC-CcEE-eeeeeeeeeeCCccChhhccc-hHHHHHHHHHHH
Confidence 488999999999999999998742111 0111122111 0000 011222222222211000011 112222233332
Q ss_pred h--cCCceEEEEccCCC--ChhhHHH----HHhhcCCC-CCCcEEEEeeCCccee
Q 045386 288 L--TNKKYFIVRDDVFN--DSDIWDD----LEEVLPDK-QNGSRVLILVTDPILL 333 (706)
Q Consensus 288 L--~~kr~LlVlDdvw~--~~~~~~~----l~~~l~~~-~~gs~IivTTR~~~v~ 333 (706)
+ ..++.|++||..-. |..+... +...+... ..+..+|+||....++
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 2 36788999999876 3222212 22233222 2346899999887664
No 267
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.25 E-value=0.057 Score=53.08 Aligned_cols=124 Identities=16% Similarity=0.210 Sum_probs=73.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc-------------------ccCC--cceEEEecCCC----------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK-------------------FYFD--CLAWVRVSIGY---------------- 250 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~--~~~wv~vs~~~---------------- 250 (706)
-.+|+|+|.+|+|||||...+..-.+-. ..|. .+-+ |.|.|
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGf--vFQ~~nLl~~ltv~ENv~lpl 108 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGF--VFQNFNLLPDLTVLENVELPL 108 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEE--ECccCCCCCCCCHHHHHHhHH
Confidence 4589999999999999999988532211 0111 0111 12221
Q ss_pred --------CHHHHHHHHHHhcCCCCCCc-cccCC--CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC
Q 045386 251 --------YFGKILDDIINSLMPPSRAR-VIIGE--DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK 317 (706)
Q Consensus 251 --------~~~~i~~~il~~l~~~~~~~-~~~~~--~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~ 317 (706)
...+-...+++.++...... ..... .-++..-.|.+.|-.+.-+|+.|.=-. |...-+.+...+..-
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 109 LIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 22344566677766642211 00112 334444566777778888888886443 445555555555532
Q ss_pred --CCCcEEEEeeCCccee
Q 045386 318 --QNGSRVLILVTDPILL 333 (706)
Q Consensus 318 --~~gs~IivTTR~~~v~ 333 (706)
..|..||+.|.+..+|
T Consensus 189 ~~~~g~tii~VTHd~~lA 206 (226)
T COG1136 189 NKERGKTIIMVTHDPELA 206 (226)
T ss_pred HHhcCCEEEEEcCCHHHH
Confidence 4588999999999888
No 268
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.11 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 269
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.24 E-value=0.0076 Score=35.75 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.6
Q ss_pred CCcEEEccCCCCCccchhhccc
Q 045386 575 NLETLEMPSSYIDQSPEDIWMM 596 (706)
Q Consensus 575 ~L~~L~L~~~~~~~lP~~l~~L 596 (706)
+|++|||++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 270
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.23 E-value=0.17 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999985
No 271
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.22 E-value=0.13 Score=52.14 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=65.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc-c--cCCc--ceEEEecCC------CCHHHHH--------------HHHHHh
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK-F--YFDC--LAWVRVSIG------YYFGKIL--------------DDIINS 262 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~--~~wv~vs~~------~~~~~i~--------------~~il~~ 262 (706)
-.+++|+|..|+|||||++.+.....-. . .|+. +.++ .+. .++.+.+ .++++.
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~--~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK--PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEe--cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 4689999999999999999998753211 1 1222 1222 121 1222222 233444
Q ss_pred cCCCCCCccccCC-C-HHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCccee
Q 045386 263 LMPPSRARVIIGE-D-YHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPILL 333 (706)
Q Consensus 263 l~~~~~~~~~~~~-~-~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~ 333 (706)
++........... + -+...-.|...|..+.=+++||.--. |...-..+...+... ..|..||++|.+...+
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 4332110001112 1 22223345556666777899998766 444445555544432 2367799999886544
No 272
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.19 E-value=0.081 Score=55.50 Aligned_cols=102 Identities=9% Similarity=-0.000 Sum_probs=59.8
Q ss_pred HHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc----cCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc-c--
Q 045386 200 LLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF----YFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV-I-- 272 (706)
Q Consensus 200 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~-~-- 272 (706)
+|..+=+.-.++-|+|.+|+|||||+..++....... .-..++|++....|...++ .++++.++....... +
T Consensus 88 ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~ 166 (316)
T TIGR02239 88 LLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVA 166 (316)
T ss_pred HhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEE
Confidence 3433334578999999999999999998875322211 1235789988887787763 445565554321100 0
Q ss_pred -cCC-CHHHH---HHHHHHHhcC-CceEEEEccCCC
Q 045386 273 -IGE-DYHLK---KSILRDYLTN-KKYFIVRDDVFN 302 (706)
Q Consensus 273 -~~~-~~~~~---~~~l~~~L~~-kr~LlVlDdvw~ 302 (706)
... +.+++ ...+...+.. +--|||+|-+-.
T Consensus 167 ~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 167 YARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred EEecCChHHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 011 33343 3333333433 455899998753
No 273
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.19 E-value=0.11 Score=50.53 Aligned_cols=117 Identities=10% Similarity=0.079 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEE---------------EecCCCC---HHHHHHHHHHhcCCCCCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWV---------------RVSIGYY---FGKILDDIINSLMPPSRA 269 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---------------~vs~~~~---~~~i~~~il~~l~~~~~~ 269 (706)
-.+++|+|..|.|||||.+.+..-.. .......+++ .+.+.+. -..+...+.-.....
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--- 110 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---
Confidence 56899999999999999999987420 0111111111 1222211 112222221100000
Q ss_pred ccccCCCHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEEEeeCCcc
Q 045386 270 RVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVLILVTDPI 331 (706)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~ 331 (706)
.+.....+. -.+...+-.+.-++++|+.-. |......+...+.. ...|..||++|.+..
T Consensus 111 --~LS~G~~qr-v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 --GLSGGERKR-VSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred --cCCHHHHHH-HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 011022223 344555555667889998776 55556666655543 224778888888763
No 274
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.045 Score=53.96 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhhHHHHHHHcC
Q 045386 210 VIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+++|+|..|.|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999963
No 275
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.21 Score=52.89 Aligned_cols=156 Identities=8% Similarity=-0.013 Sum_probs=82.7
Q ss_pred ccc-ccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCC---c-----ceEEEecCCCCHHHHHH
Q 045386 187 VSE-FERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFD---C-----LAWVRVSIGYYFGKILD 257 (706)
Q Consensus 187 ~vG-r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-----~~wv~vs~~~~~~~i~~ 257 (706)
++| -+..++.+.+.+..+. -....-++|..|+||||+|+.+.+.---..... | +-.+.-...+|...+
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i-- 83 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV-- 83 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe--
Confidence 566 5556666666665443 356678999999999999988765210000000 0 000000001111000
Q ss_pred HHHHhcCCCCCCccccCC-CHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCcc
Q 045386 258 DIINSLMPPSRARVIIGE-DYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDPI 331 (706)
Q Consensus 258 ~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 331 (706)
... -.. ..+++.+.+... ..+++=++|+|++.. .....+.+...+..-..++.+|++|.+.
T Consensus 84 ------~~~------~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~- 150 (329)
T PRK08058 84 ------APD------GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK- 150 (329)
T ss_pred ------ccc------cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh-
Confidence 000 011 333333333221 234455789999876 4667788888888767788888888765
Q ss_pred eeeccccccCCCccceeeecccccccCC--HHHHHHHHH
Q 045386 332 LLTFFELEHGGIIPLYSVPVGGPLIRLK--HEAWQFFIL 368 (706)
Q Consensus 332 v~af~~~~c~~glPLai~~~g~~L~~~~--~~~w~~~~~ 368 (706)
..++-+|+.-+..+.-.+ .+++...+.
T Consensus 151 ----------~~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 151 ----------HQILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred ----------HhCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 444445555555554444 444444443
No 276
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.18 E-value=0.058 Score=53.48 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=39.7
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEE---------EecCCCCHHHH--HHHHHHhcCCCCC
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWV---------RVSIGYYFGKI--LDDIINSLMPPSR 268 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---------~vs~~~~~~~i--~~~il~~l~~~~~ 268 (706)
.+..+|.++||+|.||||..|.++.+ +...+..-.-| ...-+.|+++. .++.+++.+....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 35678889999999999999999984 33333222212 22334466654 4678888766543
No 277
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.17 Score=52.12 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 278
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.071 Score=49.78 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=61.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC--CHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY--YFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
-.+++|+|..|.|||||++.+.... . .....+++.-..-. ...+. ...+..-. ++........ .+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~--~-~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~----qlS~G~~~r~-~l~ 92 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL--K-PTSGEILIDGKDIAKLPLEEL----RRRIGYVP----QLSGGQRQRV-ALA 92 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--C-CCccEEEECCEEcccCCHHHH----HhceEEEe----eCCHHHHHHH-HHH
Confidence 3699999999999999999998832 2 23444444221111 11111 11111100 0111333333 345
Q ss_pred HHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcc
Q 045386 286 DYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPI 331 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~ 331 (706)
..+..+.-++++|..-. |......+...+... ..+..++++|.+..
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 55555677889998876 445555555544421 22567888887653
No 279
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.17 E-value=0.068 Score=51.29 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=19.6
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 280
>PRK10867 signal recognition particle protein; Provisional
Probab=95.17 E-value=0.11 Score=56.71 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.3
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.++|.+|+||||.+..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999997766654
No 281
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.15 E-value=0.084 Score=53.03 Aligned_cols=127 Identities=19% Similarity=0.184 Sum_probs=70.2
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccc---cCC--------------cceEEEe----------------cC-----
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKF---YFD--------------CLAWVRV----------------SI----- 248 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~--------------~~~wv~v----------------s~----- 248 (706)
.-.+++|+|+.|+|||||.+.++.--+... .++ ..++|.- ++
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 357999999999999999999997311100 000 1111110 11
Q ss_pred -----CCCHHHHHHHHHHhcCCCCCCccccCC--CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--C
Q 045386 249 -----GYYFGKILDDIINSLMPPSRARVIIGE--DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--K 317 (706)
Q Consensus 249 -----~~~~~~i~~~il~~l~~~~~~~~~~~~--~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~ 317 (706)
...-.++..+.++.++...-....+++ +-+...-.|...|..+.=+|.||.=-+ |...--++...+.. .
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 011223455556666655433223344 333344567778888888889996544 32222222222221 2
Q ss_pred CCCcEEEEeeCCccee
Q 045386 318 QNGSRVLILVTDPILL 333 (706)
Q Consensus 318 ~~gs~IivTTR~~~v~ 333 (706)
..|..||+++.+-..|
T Consensus 187 ~~~~tvv~vlHDlN~A 202 (258)
T COG1120 187 EKGLTVVMVLHDLNLA 202 (258)
T ss_pred hcCCEEEEEecCHHHH
Confidence 3477899999887666
No 282
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.15 E-value=0.2 Score=48.81 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEEcCCCchhhHHHHHHH
Q 045386 210 VIAILDSNGFDKTVFAADIY 229 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~ 229 (706)
+++|+|..|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999987
No 283
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.14 E-value=0.047 Score=53.07 Aligned_cols=56 Identities=20% Similarity=0.115 Sum_probs=31.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEec-CCCCHHHHHHHHHHhcCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVS-IGYYFGKILDDIINSLMP 265 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~il~~l~~ 265 (706)
++||.+||..|+||||.+-++.. +....=..+..++.. ......+-++...+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhcc
Confidence 47999999999999997766665 233221224444432 122333444555555543
No 284
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.13 E-value=0.16 Score=50.50 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=32.6
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcc
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPI 331 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~ 331 (706)
.+...+-.+.-++++|+--. |......+...+... ..|..||++|.+..
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 55556666778899998766 555555555555432 24778888888765
No 285
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.13 E-value=0.079 Score=51.81 Aligned_cols=123 Identities=10% Similarity=0.073 Sum_probs=63.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc---------------cCC-cceEEEecC----CCCH------------HHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF---------------YFD-CLAWVRVSI----GYYF------------GKI 255 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------~F~-~~~wv~vs~----~~~~------------~~i 255 (706)
-.+++|+|..|.|||||.+.+..-..... .+. .+.++.-.. ..++ .+-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 105 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQ 105 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHH
Confidence 46899999999999999999986421100 010 122221000 0011 122
Q ss_pred HHHHHHhcCCCCCCccccCC-C-HHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEEEeeCCc
Q 045386 256 LDDIINSLMPPSRARVIIGE-D-YHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVLILVTDP 330 (706)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~-~-~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~ 330 (706)
..++++.++........... + -+...-.+...+-.+.=+++||.--. |......+...+.. ...|..||++|.+.
T Consensus 106 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 106 VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred HHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 34445555443211001111 1 12222344455555666889998766 55555566665542 23467788888765
No 286
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.12 E-value=0.044 Score=59.29 Aligned_cols=99 Identities=9% Similarity=0.115 Sum_probs=56.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCC-HHHHHHHHHHhcCCCCCCcc--ccCCC------HH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYY-FGKILDDIINSLMPPSRARV--IIGED------YH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~il~~l~~~~~~~~--~~~~~------~~ 278 (706)
-..++|+|..|+|||||++.+.... . .+.++.+-+.+... +.++..+++..-+....--. ..+.. ..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~--~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT--T--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC--C--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998732 1 24555566666543 45565655443221110000 00111 11
Q ss_pred HHHHHHHHHh--cCCceEEEEccCCCChhhHHHH
Q 045386 279 LKKSILRDYL--TNKKYFIVRDDVFNDSDIWDDL 310 (706)
Q Consensus 279 ~~~~~l~~~L--~~kr~LlVlDdvw~~~~~~~~l 310 (706)
...-.+.+++ +|+++|+++||+-.-...+.++
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REI 271 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREI 271 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHH
Confidence 2223344444 5899999999986523334444
No 287
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.11 E-value=0.14 Score=48.64 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=19.4
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998887
No 288
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.10 E-value=0.21 Score=54.57 Aligned_cols=90 Identities=16% Similarity=-0.008 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC--CHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY--YFGKILDDIINSLMPPSRARVIIGE-DYHLKKSI 283 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~ 283 (706)
...+|.++|.+|+||||.|..+.. .....-..+.-|+. ..+ ...+.++.+..+++.+.... ... +...+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~-D~~R~aa~eQL~~la~~~gvp~~~~--~~~~d~~~i~~~ 168 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGD--PDNKDAVEIAKE 168 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecC-CCCCHHHHHHHHHHHHHcCCcEEec--CCccCHHHHHHH
Confidence 478999999999999999988886 33322112333322 222 23444556666655432210 011 33333333
Q ss_pred HHHHhcCCceEEEEccCCC
Q 045386 284 LRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 284 l~~~L~~kr~LlVlDdvw~ 302 (706)
..+.+.+. =+||+|..-.
T Consensus 169 al~~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 169 GLEKFKKA-DVIIVDTAGR 186 (437)
T ss_pred HHHHhhcC-CEEEEECCCc
Confidence 33333333 4577776643
No 289
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.09 E-value=0.19 Score=49.62 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 290
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.09 E-value=0.06 Score=55.66 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++|.++|.+|+||||++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999988876
No 291
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.08 E-value=0.033 Score=58.40 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=26.0
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
.....++|+|.+|+|||.+|+.+++ +..-.|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCCe
Confidence 3578999999999999999999999 444443
No 292
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.0034 Score=62.09 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=39.2
Q ss_pred ccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch--hhccccccceeee
Q 045386 528 KHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE--DIWMMQKLMHLNF 604 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~--~l~~L~~L~~L~l 604 (706)
.+.+.|++.||.++.+. -..+|+.|..|.||-|+|+.|- .+..+++|+.|+|+.|.|..+-+ -+.++++||.|-+
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34455555555555431 1234556666666666665553 34555566666666655555433 3445555555554
No 293
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.05 E-value=0.018 Score=56.70 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+..+|+|.|.+|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999998
No 294
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.03 E-value=0.13 Score=55.66 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+++|+|.+|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999999875
No 295
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.02 E-value=0.17 Score=51.57 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 296
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.12 Score=51.88 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999864
No 297
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.00 E-value=0.2 Score=54.59 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.++|.+|+||||.|..+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999877766
No 298
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.00 E-value=0.14 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 299
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.00 E-value=0.086 Score=54.61 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=33.3
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIY 229 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 229 (706)
+-+|..+..--+++|++++ +..|.+.|.+|.|||-||-...
T Consensus 226 i~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHH
Confidence 5557777777788888877 9999999999999999885543
No 300
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.018 Score=52.69 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=24.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcccc-CC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFY-FD 239 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~ 239 (706)
..-|.|.|++|+||||+++.+.+ ..+.. |.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~k 35 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYK 35 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCce
Confidence 45689999999999999999998 55443 54
No 301
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.97 E-value=0.39 Score=51.08 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCchhhH-HHHHHHcCCCccccCCcceEEEec-CCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTV-FAADIYNNNHVKFYFDCLAWVRVS-IGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSIL 284 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l 284 (706)
-++|.+||+.|||||| ||+..+.-.....+ ..+..|+.. -.....+-++.-.+-++.+-. .. +..++...+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-----vv~~~~el~~ai 276 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE-----VVYSPKELAEAI 276 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE-----EecCHHHHHHHH
Confidence 7899999999999987 77776652111111 234445432 122333444444444444432 11 555555555
Q ss_pred HHHhcCCceEEEEccCCC---ChhhHHHHHhhcCCC
Q 045386 285 RDYLTNKKYFIVRDDVFN---DSDIWDDLEEVLPDK 317 (706)
Q Consensus 285 ~~~L~~kr~LlVlDdvw~---~~~~~~~l~~~l~~~ 317 (706)
... +++ =+|.+|=+.. |.....++...+...
T Consensus 277 ~~l-~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 277 EAL-RDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred HHh-hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 443 222 3455565544 355566666666543
No 302
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.96 E-value=0.16 Score=49.73 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=32.8
Q ss_pred HHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEEEeeCCcc
Q 045386 282 SILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVLILVTDPI 331 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~ 331 (706)
-.+...|-.+.-+++||.--. |....+.+...+.. ...|..||++|.+..
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 345555666778899998776 55555555555543 223778888887754
No 303
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.96 E-value=0.18 Score=50.78 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=31.6
Q ss_pred HHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcce
Q 045386 284 LRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPIL 332 (706)
Q Consensus 284 l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v 332 (706)
|...+-.+.-+++||..-. |......+...+..- ..|..||++|.+...
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 4444445667899998876 566666666655532 246778888877643
No 304
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.95 E-value=0.13 Score=53.05 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=33.9
Q ss_pred HHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcce
Q 045386 282 SILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPIL 332 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v 332 (706)
-.|...|-.++-+++||.... |...-..+...+..- ..|..||++|.+...
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 345555666778999999877 555555565555432 237789999887644
No 305
>PRK13695 putative NTPase; Provisional
Probab=94.95 E-value=0.011 Score=56.47 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.7
Q ss_pred EEEEEcCCCchhhHHHHHHHcC
Q 045386 210 VIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.|.|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 306
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.95 E-value=0.02 Score=56.32 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.-.+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 307
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.94 E-value=0.12 Score=50.74 Aligned_cols=126 Identities=14% Similarity=0.200 Sum_probs=65.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCc-------------c-----ccCCcceEE--EecCCC----CHHHH--------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHV-------------K-----FYFDCLAWV--RVSIGY----YFGKI-------- 255 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~-----~~F~~~~wv--~vs~~~----~~~~i-------- 255 (706)
-.+++|+|.+|+|||||++.+.--.+- . ..|..+-.| +--... ++.++
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 468999999999999999998753211 0 012222221 111111 22222
Q ss_pred --------HHHHHHhcCCCCCCcccc-CC-CHHHH-HHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCC
Q 045386 256 --------LDDIINSLMPPSRARVII-GE-DYHLK-KSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNG 320 (706)
Q Consensus 256 --------~~~il~~l~~~~~~~~~~-~~-~~~~~-~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~g 320 (706)
..+++.+++.+..--... .. +-.++ .-.|.+.|.-+.=+||+|..-+ |...-..+...|.. ...+
T Consensus 113 ~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~ 192 (252)
T COG1124 113 GLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERG 192 (252)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC
Confidence 234444444432110001 11 22222 2345666667777899998766 43333444444432 2345
Q ss_pred cEEEEeeCCccee
Q 045386 321 SRVLILVTDPILL 333 (706)
Q Consensus 321 s~IivTTR~~~v~ 333 (706)
-.+|+.|.+-.++
T Consensus 193 lt~l~IsHdl~~v 205 (252)
T COG1124 193 LTYLFISHDLALV 205 (252)
T ss_pred ceEEEEeCcHHHH
Confidence 5788888887665
No 308
>PRK06547 hypothetical protein; Provisional
Probab=94.94 E-value=0.034 Score=52.84 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+...+.. ....+|+|.|.+|+||||+|+.+...
T Consensus 6 ~~~~~~~--~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCG--GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444443 34889999999999999999999873
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.94 E-value=0.15 Score=51.08 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=68.2
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCc---------------
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRAR--------------- 270 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~--------------- 270 (706)
+.-+++.|+|.+|+||||+|.++... ..+. =..++|++..+. ..++.+.+ ++++....+.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45789999999999999999998542 2222 235778877654 34555543 3343221110
Q ss_pred cccCC-CHHHHHHHHHHHhcC-CceEEEEccCCC-----ChhhHHHHHhhcCC-CCCCcEEEEeeCCc
Q 045386 271 VIIGE-DYHLKKSILRDYLTN-KKYFIVRDDVFN-----DSDIWDDLEEVLPD-KQNGSRVLILVTDP 330 (706)
Q Consensus 271 ~~~~~-~~~~~~~~l~~~L~~-kr~LlVlDdvw~-----~~~~~~~l~~~l~~-~~~gs~IivTTR~~ 330 (706)
..... +.+++...+.+.+.. +.-++|+|.+-. +......+...+.. ...|..+++|+...
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~ 165 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPY 165 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Confidence 00112 456777788887764 555899998752 12222232222221 22356677777543
No 310
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.93 E-value=0.15 Score=53.38 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 311
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.92 E-value=0.017 Score=51.59 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=19.0
Q ss_pred EEEEcCCCchhhHHHHHHHc
Q 045386 211 IAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~ 230 (706)
|.|.|..|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 312
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.91 E-value=0.16 Score=50.38 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=31.5
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
.+...+-.+.-+++||..-. |....+.+...+.....+..||++|.+...
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 194 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDE 194 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 34445556677899998876 555555555555432234678888877644
No 313
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.91 E-value=0.16 Score=50.69 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=33.0
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v 332 (706)
.|...|-.+.-+++||.--. |......+...+..- ..|..||++|.+...
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~ 200 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH
Confidence 45555556677889998766 556666666666532 236788899877644
No 314
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.89 E-value=0.18 Score=49.78 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.++..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999999999975
No 315
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.89 E-value=0.17 Score=48.57 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=31.8
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCc
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDP 330 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~ 330 (706)
.+...+-.+.-+++||+--. |....+.+...+..- ..|..||++|.+.
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35555556777899998766 555556665555432 2367889998875
No 316
>PRK14527 adenylate kinase; Provisional
Probab=94.89 E-value=0.099 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.|+|.+|+||||+|+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 317
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.89 E-value=0.21 Score=50.87 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=64.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCc-cc--cCCc---------ceEEEecCC----CCH------------HHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHV-KF--YFDC---------LAWVRVSIG----YYF------------GKILDDI 259 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~~---------~~wv~vs~~----~~~------------~~i~~~i 259 (706)
-.+++|+|..|.|||||++.+..-... .. .|+. +.|+.-... .++ .+-..++
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 117 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA 117 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHH
Confidence 468999999999999999999874211 11 1111 222211100 011 1223345
Q ss_pred HHhcCCCCCCccccCC---CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCCcEEEEeeCCcce
Q 045386 260 INSLMPPSRARVIIGE---DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNGSRVLILVTDPIL 332 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~---~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v 332 (706)
++.++........... ...+... |...|-.+.-+++||.--. |......+...+.. ...|..||++|.+...
T Consensus 118 l~~~gl~~~~~~~~~~LSgGqkqrl~-laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 118 LAAVGLADRANEWPAALSGGQKQRVA-LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHcCChhHhcCChhhCCHHHHHHHH-HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 5555543210001111 2333333 3444445566788998766 55555555554442 1236678888887643
No 318
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.87 E-value=0.14 Score=52.67 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=33.2
Q ss_pred HHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcce
Q 045386 282 SILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPIL 332 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v 332 (706)
-.|...|-.+.-+++||.... |......+...+..- ..|..||++|.+...
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~ 200 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL 200 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 345556666778999999877 555555555555422 236778888877654
No 319
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.87 E-value=0.11 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++.++|.+|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998876
No 320
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.0029 Score=62.57 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=63.4
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccCh--hhcCCCCCcEEEccCC-CCCccch-----hh
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPS--LLCTLLNLETLEMPSS-YIDQSPE-----DI 593 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~--~i~~L~~L~~L~L~~~-~~~~lP~-----~l 593 (706)
.+..+|+.|.+|.|+-|.|+++ ..+..++.|+.|.|+.|.|..|-+ .+.+|++|++|.|..| ....-+. -+
T Consensus 35 sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 6678899999999999998876 347888999999999998887654 4678999999999888 3333333 34
Q ss_pred ccccccceeee
Q 045386 594 WMMQKLMHLNF 604 (706)
Q Consensus 594 ~~L~~L~~L~l 604 (706)
.-|++|+.|+-
T Consensus 114 R~LPnLkKLDn 124 (388)
T KOG2123|consen 114 RVLPNLKKLDN 124 (388)
T ss_pred HHcccchhccC
Confidence 56778877764
No 321
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.84 E-value=0.22 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999964
No 322
>PRK14974 cell division protein FtsY; Provisional
Probab=94.83 E-value=0.15 Score=53.71 Aligned_cols=101 Identities=16% Similarity=0.094 Sum_probs=50.7
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccc-cCCcceEEEecCCCC--HHHHHHHHHHhcCCCCCCccccCC-CHHHHH-
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKF-YFDCLAWVRVSIGYY--FGKILDDIINSLMPPSRARVIIGE-DYHLKK- 281 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~--~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~- 281 (706)
+..+|.++|++|+||||++..+.. .... .+. ++.+. ...+. ..+-++.....++.+.... ... +...+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~--~~g~dp~~v~~ 212 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKH--KYGADPAAVAY 212 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecc--cCCCCHHHHHH
Confidence 468999999999999997777775 3322 232 22232 22332 2334555666665432210 011 332322
Q ss_pred HHHHHHhcCCceEEEEccCCC---ChhhHHHHHhh
Q 045386 282 SILRDYLTNKKYFIVRDDVFN---DSDIWDDLEEV 313 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~---~~~~~~~l~~~ 313 (706)
..+...-....=+|++|-... +...+.++...
T Consensus 213 ~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i 247 (336)
T PRK14974 213 DAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKI 247 (336)
T ss_pred HHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHH
Confidence 223322222223778887654 23344555443
No 323
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.83 E-value=0.17 Score=49.58 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 324
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.82 E-value=0.054 Score=52.46 Aligned_cols=46 Identities=22% Similarity=0.129 Sum_probs=37.2
Q ss_pred CccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-..|+||-++.++.+.-+-.+++ ..-+.|-|++|+||||-+..+.+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 33449999999998877766665 77888999999999997777766
No 325
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.81 E-value=0.2 Score=49.16 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEEEeeCCcc
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVLILVTDPI 331 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~ 331 (706)
.+...+-.+.-+++||.--. |......+...+.. ...|..||++|.+..
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 34455555677899998766 55555666655543 234778899988764
No 326
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.81 E-value=0.17 Score=51.52 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 327
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.81 E-value=0.26 Score=50.58 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.++|.++|.+|+||||.+..+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998888776
No 328
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.81 E-value=0.12 Score=50.77 Aligned_cols=49 Identities=22% Similarity=0.193 Sum_probs=31.2
Q ss_pred HHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcce
Q 045386 284 LRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPIL 332 (706)
Q Consensus 284 l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v 332 (706)
+...+-.+.-+++||.--. |......+...+... ..|..||++|.+...
T Consensus 137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 188 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE 188 (208)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 4444555667899998776 555555555555432 246778888877643
No 329
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.81 E-value=0.047 Score=59.63 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=36.0
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||++.++.+...+..+. -|-|.|.+|+|||++|+.+..
T Consensus 22 i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 22 LYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred ccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 8999999999999887654 588999999999999999998
No 330
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.79 E-value=0.29 Score=54.93 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=68.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCC-ccccC-----CcceEEEecC---------------CC-CH-HHHHHHHHHhcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNH-VKFYF-----DCLAWVRVSI---------------GY-YF-GKILDDIINSLM 264 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F-----~~~~wv~vs~---------------~~-~~-~~i~~~il~~l~ 264 (706)
-..|+|+|..|+|||||.+.+..... ..... -.+.++.-.. .+ +. +.-.+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 45799999999999999999965321 11100 0011111111 11 11 344555555555
Q ss_pred CCCCCcc-ccCC--CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcc
Q 045386 265 PPSRARV-IIGE--DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPI 331 (706)
Q Consensus 265 ~~~~~~~-~~~~--~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 331 (706)
-...... .... .-+...-.+...+-.+.-+||||.=-+ |.+..+.+..++.... |+ ||+.|.++.
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~ 497 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRY 497 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHH
Confidence 4433211 1111 223344456666677888999998776 5666666777666444 44 777777653
No 331
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.79 E-value=0.11 Score=58.32 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=34.3
Q ss_pred ccccccccccHHHHHHHHh---cC-------CCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 184 WLDVSEFERGREELFDLLI---EG-------PSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+.+++|.+..++++.+++. .. ....+-+-++|.+|.|||++|+.+.+.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3448998887766655443 21 122445889999999999999999983
No 332
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.77 E-value=0.18 Score=51.74 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.+..-
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999874
No 333
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.76 E-value=0.16 Score=53.68 Aligned_cols=102 Identities=9% Similarity=0.046 Sum_probs=62.2
Q ss_pred HHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCcccc----CCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc-c--
Q 045386 200 LLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFY----FDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV-I-- 272 (706)
Q Consensus 200 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~-~-- 272 (706)
+|..+=..-.++-|.|.+|+|||+|+..++-....... =..++||+....|..+++ .+|++.++....... +
T Consensus 115 lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~ 193 (342)
T PLN03186 115 ILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVA 193 (342)
T ss_pred hhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceE
Confidence 34333345788999999999999999887753222211 126899999999988876 466777665432100 0
Q ss_pred -cCC-CHHHHHHHHH---HHh-cCCceEEEEccCCC
Q 045386 273 -IGE-DYHLKKSILR---DYL-TNKKYFIVRDDVFN 302 (706)
Q Consensus 273 -~~~-~~~~~~~~l~---~~L-~~kr~LlVlDdvw~ 302 (706)
... +.+++...+. ..+ ..+--|||+|-+-.
T Consensus 194 ~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 194 YARAYNTDHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred EEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 111 3444433332 333 33556899998753
No 334
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.73 E-value=0.18 Score=50.75 Aligned_cols=123 Identities=11% Similarity=-0.000 Sum_probs=64.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCc-cc--cCC-------------cceEEEecCCCC-----H--------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHV-KF--YFD-------------CLAWVRVSIGYY-----F-------------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~-------------~~~wv~vs~~~~-----~-------------- 252 (706)
-.+++|+|..|.|||||++.+..-... .. .|+ ..+. .+.+.+. +
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~ 107 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG-MVFQQPHLFEGTVKDNIEYGPMLKGEK 107 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE-EEecCchhchhhHHHHHhcchhhcCcH
Confidence 458999999999999999999874211 00 011 0111 1222211 0
Q ss_pred HHHHHHHHHhcCCCC-CCccccCC---CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEE
Q 045386 253 GKILDDIINSLMPPS-RARVIIGE---DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVL 324 (706)
Q Consensus 253 ~~i~~~il~~l~~~~-~~~~~~~~---~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~Ii 324 (706)
..-..++++.++... ........ ...+.. .|...+-.+.-+++||.--. |......+...+..- ..|..||
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl-~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii 186 (241)
T PRK14250 108 NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRV-SIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVI 186 (241)
T ss_pred HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH-HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 111234455554431 00001122 222333 34444555667899998776 555555555555532 2367788
Q ss_pred EeeCCcce
Q 045386 325 ILVTDPIL 332 (706)
Q Consensus 325 vTTR~~~v 332 (706)
++|.+...
T Consensus 187 ~~sH~~~~ 194 (241)
T PRK14250 187 WITHNMEQ 194 (241)
T ss_pred EEeccHHH
Confidence 88877643
No 335
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.73 E-value=0.13 Score=57.17 Aligned_cols=135 Identities=17% Similarity=0.214 Sum_probs=77.8
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEcCCCchhhH-HHHHHHcCCCccccCCcceEEEecCC--CCHHHHHHHHHHhcCCCCC
Q 045386 192 RGREELFDLLIEGPSGLSVIAILDSNGFDKTV-FAADIYNNNHVKFYFDCLAWVRVSIG--YYFGKILDDIINSLMPPSR 268 (706)
Q Consensus 192 ~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~il~~l~~~~~ 268 (706)
...++|++.+.+ -.||.|||-.|.|||| |+|.+|.+--.... -|.+.|+ ..+..+.+.+.+.++..-.
T Consensus 359 ~~R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edGY~~~G-----mIGcTQPRRvAAiSVAkrVa~EM~~~lG 429 (1042)
T KOG0924|consen 359 ACRDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDGYADNG-----MIGCTQPRRVAAISVAKRVAEEMGVTLG 429 (1042)
T ss_pred HHHHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcccccCC-----eeeecCchHHHHHHHHHHHHHHhCCccc
Confidence 345666666654 4699999999999999 88999885322221 2334443 3445667777777765544
Q ss_pred Ccc----ccCC--CHH----------HHHHHHHHHhcCCceEEEEccCCCC---hhh-HHHHHhhcCCCCCCcEEEEeeC
Q 045386 269 ARV----IIGE--DYH----------LKKSILRDYLTNKKYFIVRDDVFND---SDI-WDDLEEVLPDKQNGSRVLILVT 328 (706)
Q Consensus 269 ~~~----~~~~--~~~----------~~~~~l~~~L~~kr~LlVlDdvw~~---~~~-~~~l~~~l~~~~~gs~IivTTR 328 (706)
... .+++ +.+ -+.+.|.+..-.|=..||+|...+. .+. ..-++..+.. -..-|+||||-
T Consensus 430 ~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSA 508 (1042)
T KOG0924|consen 430 DTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSA 508 (1042)
T ss_pred cccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeec
Confidence 322 1222 111 1233334433445568899988762 222 2223333322 23579999997
Q ss_pred Ccceeecc
Q 045386 329 DPILLTFF 336 (706)
Q Consensus 329 ~~~v~af~ 336 (706)
.....-|.
T Consensus 509 Tm~a~kf~ 516 (1042)
T KOG0924|consen 509 TMDAQKFS 516 (1042)
T ss_pred cccHHHHH
Confidence 77666333
No 336
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.71 E-value=0.082 Score=57.49 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCC------CCCccccCC-CHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPP------SRARVIIGE-DYHLK 280 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~------~~~~~~~~~-~~~~~ 280 (706)
-..++|+|..|+|||||++.+..... ....+++..--..-++.++....+...... ..+++.... -....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45799999999999999999886322 222344443323445555555444433111 010000000 11122
Q ss_pred HHHHHHHh--cCCceEEEEccCCC
Q 045386 281 KSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 281 ~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
.-.+.+++ +++.+|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 23334444 47999999999865
No 337
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.70 E-value=0.12 Score=48.10 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=61.6
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccc-cCCcceEEEecC---CCCHHHHHHHHHHhcCC------CCCCccccCC---
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKF-YFDCLAWVRVSI---GYYFGKILDDIINSLMP------PSRARVIIGE--- 275 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~---~~~~~~i~~~il~~l~~------~~~~~~~~~~--- 275 (706)
..|-|++..|.||||+|-...- +... .+ .+.+|-.-+ ...... +++.+.. ..........
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~-~v~~vQFlKg~~~~gE~~----~l~~l~~v~~~~~g~~~~~~~~~~~~ 75 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGY-RVGVVQFLKGGWKYGELK----ALERLPNIEIHRMGRGFFWTTENDEE 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCC-eEEEEEEeCCCCccCHHH----HHHhCCCcEEEECCCCCccCCCChHH
Confidence 4678888899999999966654 2222 22 223322222 222222 2333310 0000000000
Q ss_pred ---CHHHHHHHHHHHhcCCc-eEEEEccCCC----ChhhHHHHHhhcCCCCCCcEEEEeeCCcc
Q 045386 276 ---DYHLKKSILRDYLTNKK-YFIVRDDVFN----DSDIWDDLEEVLPDKQNGSRVLILVTDPI 331 (706)
Q Consensus 276 ---~~~~~~~~l~~~L~~kr-~LlVlDdvw~----~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 331 (706)
......+..++.+.... =|||||.+-. .....+.+...+.....+..||+|.|+..
T Consensus 76 ~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 76 DIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223344455555444 4999999854 24455667777766666788999999853
No 338
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.70 E-value=0.2 Score=53.51 Aligned_cols=87 Identities=21% Similarity=0.113 Sum_probs=48.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccC--CcceEEEecC-CCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYF--DCLAWVRVSI-GYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSIL 284 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~-~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l 284 (706)
-.++.++|..|+||||++..+.. +....+ ..+..++... .....+-++...+.++.+... .. +..++...+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~---~~-~~~~l~~~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA---VK-DGGDLQLAL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe---cC-CcccHHHHH
Confidence 46999999999999999999887 332233 2344444211 223445555555565544321 01 333343333
Q ss_pred HHHhcCCceEEEEccCCC
Q 045386 285 RDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 285 ~~~L~~kr~LlVlDdvw~ 302 (706)
. .+.++ -+|++|..-.
T Consensus 211 ~-~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 211 A-ELRNK-HMVLIDTIGM 226 (374)
T ss_pred H-HhcCC-CEEEEcCCCC
Confidence 3 33444 4566887754
No 339
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.69 E-value=0.19 Score=57.21 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.-..++|+|..|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999764
No 340
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=94.67 E-value=0.25 Score=50.37 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=32.1
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v 332 (706)
.+...+..+.-+++||..-. |....+.+...+..- ..|..||++|.+...
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL 199 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 44555555677899998776 555555555555432 236778888877644
No 341
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.66 E-value=0.18 Score=48.98 Aligned_cols=114 Identities=12% Similarity=0.068 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC
Q 045386 196 ELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE 275 (706)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~ 275 (706)
+.+..+.... -+++.|.|.+|.||||+++.+.. ..... ...+.+..... +....+.+..+....
T Consensus 8 ~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~--~~~~~-g~~v~~~apT~----~Aa~~L~~~~~~~a~------- 71 (196)
T PF13604_consen 8 EAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAE--ALEAA-GKRVIGLAPTN----KAAKELREKTGIEAQ------- 71 (196)
T ss_dssp HHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHH--HHHHT-T--EEEEESSH----HHHHHHHHHHTS-EE-------
T ss_pred HHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHH--HHHhC-CCeEEEECCcH----HHHHHHHHhhCcchh-------
Confidence 3444444332 46788899999999999998876 33332 12232322211 122223333222111
Q ss_pred CHHHHHHHHHHHh------cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEee
Q 045386 276 DYHLKKSILRDYL------TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILV 327 (706)
Q Consensus 276 ~~~~~~~~l~~~L------~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTT 327 (706)
+...........- ..++-+||+|..+. +...+..+....+. .|+|+|+.=
T Consensus 72 Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 72 TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 1111110000000 12345999999987 56677777776654 466777654
No 342
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.66 E-value=0.29 Score=49.04 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=32.3
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v 332 (706)
.+...+-.+.-+++||.--. |....+.+...+..- ..|..||++|.+...
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 34555556677899998766 555555555555532 246788888887644
No 343
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.66 E-value=0.16 Score=53.40 Aligned_cols=96 Identities=8% Similarity=0.061 Sum_probs=57.5
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccC----CcceEEEecCCCCHHHHHHHHHHhcCCCCCCc---c---c-cC
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF----DCLAWVRVSIGYYFGKILDDIINSLMPPSRAR---V---I-IG 274 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~---~---~-~~ 274 (706)
+.-+++-|+|.+|+||||++.+++-........ ..++||+....|+.+++. ++++.++...... . . ..
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCC
Confidence 456899999999999999999887643321111 268999998888887754 4455554432100 0 0 01
Q ss_pred C-CHHHHHHHHHHHhcCC---ceEEEEccCCC
Q 045386 275 E-DYHLKKSILRDYLTNK---KYFIVRDDVFN 302 (706)
Q Consensus 275 ~-~~~~~~~~l~~~L~~k---r~LlVlDdvw~ 302 (706)
. ....+.+.+.+.+... --+||+|-+-.
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 0 1112334455555432 34888888754
No 344
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.65 E-value=0.083 Score=55.87 Aligned_cols=131 Identities=7% Similarity=-0.025 Sum_probs=71.0
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC-CHHHHHHHHHHhcCC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY-YFGKILDDIINSLMP 265 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~il~~l~~ 265 (706)
++|......++.+.+..-...-.-|-|+|..|.||+++|+.++.... ....-||.+.... +...+...++..-.+
T Consensus 8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~----r~~~pfv~v~c~~~~~~~~~~~lfg~~~~ 83 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS----RWQGPFISLNCAALNENLLDSELFGHEAG 83 (326)
T ss_pred cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC----ccCCCeEEEeCCCCCHHHHHHHHcccccc
Confidence 88988888888887764333345688999999999999999986211 1123344444332 222222222211100
Q ss_pred CCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCC-----------CCcEEEEeeCCc
Q 045386 266 PSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQ-----------NGSRVLILVTDP 330 (706)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~ 330 (706)
. +..........+ -....=.|+||+|.. ....+..+...+..+. ...+||.||...
T Consensus 84 ~------~~g~~~~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 84 A------FTGAQKRHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred c------cCCcccccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 0 000000001111 112334588999987 4566677776664322 125788877554
No 345
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.65 E-value=0.32 Score=54.66 Aligned_cols=134 Identities=14% Similarity=0.086 Sum_probs=86.0
Q ss_pred cccccccHHHHHHHHhc---CCCCcEEEEEEcCCCchhhHHHHHHHcCCC---ccccCCcceEEEec--CCCCHHHHHHH
Q 045386 187 VSEFERGREELFDLLIE---GPSGLSVIAILDSNGFDKTVFAADIYNNNH---VKFYFDCLAWVRVS--IGYYFGKILDD 258 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv~vs--~~~~~~~i~~~ 258 (706)
+-+|+.+..+|.+.+.. ++..-+.+-|.|.+|.|||..+..|.+.-+ -++.-....+|.+. .-....++...
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 77899999999888854 223455899999999999999999998321 11222222334332 33458899999
Q ss_pred HHHhcCCCCCCccccCCCHHHHHHHHHHHhc-----CCceEEEEccCCC-ChhhHHHHHhhcCC-CCCCcEEEEee
Q 045386 259 IINSLMPPSRARVIIGEDYHLKKSILRDYLT-----NKKYFIVRDDVFN-DSDIWDDLEEVLPD-KQNGSRVLILV 327 (706)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdvw~-~~~~~~~l~~~l~~-~~~gs~IivTT 327 (706)
|..++.+..- ......+.+..++. .+..+|++|.+.. =...-+-+...|.+ ..++||++|.+
T Consensus 478 I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 478 IWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 9999987654 56666667777665 2467888887643 01112333344443 34566665554
No 346
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.61 E-value=0.13 Score=51.16 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 347
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.60 E-value=0.21 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.++..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999975
No 348
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.58 E-value=0.02 Score=56.53 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=59.1
Q ss_pred CCccchhhccccccceeee---cCccCCcchhcCCccCccccccccc--ccCCCCchhcCCCCCCCeEEEEccCCcCccc
Q 045386 586 IDQSPEDIWMMQKLMHLNF---GSITLPAPPKNYSSSLKNLIFISAL--NPSSCTPDILDRLPSVRTLRISGDLSYYQSG 660 (706)
Q Consensus 586 ~~~lP~~l~~L~~L~~L~l---~~~~lp~~i~~~l~~L~~L~~~~~~--~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 660 (706)
+..+-..+..+..|.+.++ +...+| .|++|++|.++.+. ...+ ...-...+++|++|.+++|.......
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P-----~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFP-----KLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred cccccccccchhhhhhhccceeecccCC-----CcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCccccccc
Confidence 3333344444444444444 222445 77888888887773 3333 33344556888899888886222222
Q ss_pred hHHhcCCCCCCcEEEEeeCCCCCccccC--CcccccccceEEe
Q 045386 661 VSKSLCELHKLECLKLVNESKPSWMVLS--EYQFPPSLIQLSL 701 (706)
Q Consensus 661 ~~~~l~~l~~L~~L~L~~~~~~~l~~l~--~~~~p~~L~~L~L 701 (706)
+ ..+..+.+|.+|++.+|....+..-. .+.+.++|++|+=
T Consensus 109 l-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 109 L-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred c-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 2 34556677888888876642222110 1122356776653
No 349
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.58 E-value=0.11 Score=60.87 Aligned_cols=131 Identities=14% Similarity=0.092 Sum_probs=71.2
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC-CHHHHHHHHHHhcCC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY-YFGKILDDIINSLMP 265 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~il~~l~~ 265 (706)
++|....+..+.+.+..-...-.-|-|+|..|.|||++|+.+++..... ..-|+.+.... ....+...++....+
T Consensus 378 liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~----~~~~v~i~c~~~~~~~~~~~lfg~~~~ 453 (686)
T PRK15429 378 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN----NRRMVKMNCAAMPAGLLESDLFGHERG 453 (686)
T ss_pred eeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC----CCCeEEEecccCChhHhhhhhcCcccc
Confidence 8999888888877665332234578899999999999999998843211 12233332221 112222222221111
Q ss_pred CCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCC-----------CCcEEEEeeCCc
Q 045386 266 PSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQ-----------NGSRVLILVTDP 330 (706)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~ 330 (706)
. +..........+ -....=.|+||+|.. .......+...+..+. ...|||.||...
T Consensus 454 ~------~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 454 A------FTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred c------ccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 0 000001111111 122345799999987 4566666766664321 234888887554
No 350
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.57 E-value=0.18 Score=49.46 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=33.1
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHH-HHHhhcCCC-CC-CcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWD-DLEEVLPDK-QN-GSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~-~l~~~l~~~-~~-gs~IivTTR~~~v 332 (706)
.+...+..+.-++++|+.-. |..... .+...+... .. |..||++|.+...
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~ 185 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEEL 185 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHH
Confidence 45566677888999999877 455555 555555432 22 5678888877654
No 351
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.57 E-value=0.11 Score=51.66 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 352
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.56 E-value=0.13 Score=49.76 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=59.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCC---ccc--cCCc--------ceEEEecCCCC---HHHHHHHHHHhcCCCCCCcc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNH---VKF--YFDC--------LAWVRVSIGYY---FGKILDDIINSLMPPSRARV 271 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~--~F~~--------~~wv~vs~~~~---~~~i~~~il~~l~~~~~~~~ 271 (706)
-.+++|+|..|.|||||++.+..... ... .|+. .....+.+.+. ...+...+.-.....
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----- 107 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR----- 107 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh-----
Confidence 46999999999999999999996311 111 1111 01112233211 112222221100000
Q ss_pred ccCCCHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEEEeeCCcc
Q 045386 272 IIGEDYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVLILVTDPI 331 (706)
Q Consensus 272 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~ 331 (706)
.+.....+... +...+-.+.-++++|.--. |......+...+.. ...|..||++|.+..
T Consensus 108 ~LSgGe~qrv~-la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 108 GLSVEQRKRLT-IGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred cCCHHHhHHHH-HHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 01113333333 4444445566788898765 44444455444442 123678888887754
No 353
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.56 E-value=0.12 Score=52.38 Aligned_cols=106 Identities=14% Similarity=0.117 Sum_probs=63.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCc--cccCCcceEEEecCCC-CHHHHHHHHHHhcCCCCCCcc--ccCC------C
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHV--KFYFDCLAWVRVSIGY-YFGKILDDIINSLMPPSRARV--IIGE------D 276 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~i~~~il~~l~~~~~~~~--~~~~------~ 276 (706)
=.-++|.|-.|+|||+|+..+.+...+ +.+-+.++++-+.+.. ++.++..++.+.=.....--. ..++ -
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 456899999999999999998875431 1234678888887764 456666666554221110000 0011 1
Q ss_pred HHHHHHHHHHHh---cCCceEEEEccCCCChhhHHHHHhh
Q 045386 277 YHLKKSILRDYL---TNKKYFIVRDDVFNDSDIWDDLEEV 313 (706)
Q Consensus 277 ~~~~~~~l~~~L---~~kr~LlVlDdvw~~~~~~~~l~~~ 313 (706)
.......+.+++ ++|+.|+++||+-.....+.++...
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl~ 188 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAA 188 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHhc
Confidence 122233455555 3689999999987633444444433
No 354
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.54 E-value=0.042 Score=53.80 Aligned_cols=118 Identities=13% Similarity=0.042 Sum_probs=59.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
.+++.|.|..|.||||+.+.+.-..-. ....++|.... ..+ .+...|+..++........... ...-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l---a~~G~~vpa~~-~~l-~~~d~I~~~~~~~d~~~~~~S~-fs~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM---AQIGCFVPAEY-ATL-PIFNRLLSRLSNDDSMERNLST-FASEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH---HHcCCCcchhh-cCc-cChhheeEecCCccccchhhhH-HHHHHHHHHHH
Confidence 478999999999999999988753111 11122221111 111 2333444444433211001111 11111122333
Q ss_pred h--cCCceEEEEccCCC--ChhhH----HHHHhhcCCCCCCcEEEEeeCCccee
Q 045386 288 L--TNKKYFIVRDDVFN--DSDIW----DDLEEVLPDKQNGSRVLILVTDPILL 333 (706)
Q Consensus 288 L--~~kr~LlVlDdvw~--~~~~~----~~l~~~l~~~~~gs~IivTTR~~~v~ 333 (706)
+ ..++-|+++|.... +..+. ..+...+.. .|+.+|++|....++
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~ 154 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIA 154 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHH
Confidence 3 35678999999854 23221 223333332 378999999887665
No 355
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.52 E-value=0.064 Score=56.14 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.+..-
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 356
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.49 E-value=0.026 Score=44.54 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+|.|.|..|+||||+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 357
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.46 E-value=0.2 Score=50.28 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=32.9
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v 332 (706)
.+...+-.+.-+++||..-. |...-+.+...+.. ...|..||++|.+...
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 216 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKD 216 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 44555556667899998877 55555666665553 2236779999988653
No 358
>PRK08149 ATP synthase SpaL; Validated
Probab=94.45 E-value=0.14 Score=55.63 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=52.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCC-CCHHHHHHHHHHhcCCCCCCcc--ccCC------CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIG-YYFGKILDDIINSLMPPSRARV--IIGE------DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~il~~l~~~~~~~~--~~~~------~~~ 278 (706)
-..++|+|..|+|||||++.+...... +.++...+... -++.++..+.+........... ..+. ...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 458899999999999999999874322 23333444433 3566666666654332111000 0011 112
Q ss_pred HHHHHHHHHh--cCCceEEEEccCCC
Q 045386 279 LKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
.....+.+++ ++|++||++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 2333344444 58999999999865
No 359
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.11 Score=51.25 Aligned_cols=49 Identities=20% Similarity=0.359 Sum_probs=31.4
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcc
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPI 331 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~ 331 (706)
.+...+-.+.-+++||.--. |....+.+...+..- ..|..||++|.+..
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 190 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 33444445667889998766 566666666666532 23677888887764
No 360
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.41 E-value=0.59 Score=49.31 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=31.1
Q ss_pred CCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 290 NKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 290 ~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
+++-.+|+|++.. .....+.+...+..-..++.+|+||.+.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~ 146 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQP 146 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 3444567799987 5778888888887766678888888776
No 361
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.41 E-value=0.097 Score=56.85 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCC-HHHHHHHHHHhcCCCCCCcc-c-cCCC------H
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYY-FGKILDDIINSLMPPSRARV-I-IGED------Y 277 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~il~~l~~~~~~~~-~-~~~~------~ 277 (706)
+-..++|+|..|+|||||++++.+.... +.++++-+.+... +.++..+.+..-+....--. . .+.. .
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA----DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC----CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 3568899999999999999999974321 3455566666543 44555555543221100000 0 0111 1
Q ss_pred HHHHHHHHHHh--cCCceEEEEccCCC
Q 045386 278 HLKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 278 ~~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
....-.+.+++ ++|.+|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 22233344444 58999999999865
No 362
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.39 E-value=0.12 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.164 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++++|+|..|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999875
No 363
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.39 E-value=0.22 Score=49.57 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=31.5
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v 332 (706)
.+...+-.+.-+++||+--. |....+.+...+... ..|..||++|.+...
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~ 186 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE 186 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 34444555667889998766 555555555555422 236779999988654
No 364
>PTZ00035 Rad51 protein; Provisional
Probab=94.36 E-value=0.22 Score=52.71 Aligned_cols=102 Identities=9% Similarity=0.050 Sum_probs=59.4
Q ss_pred HHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc----cCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc-c--
Q 045386 200 LLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF----YFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV-I-- 272 (706)
Q Consensus 200 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~-~-- 272 (706)
+|..+=+.-.++.|+|.+|+|||||+..++-...... .=..++||+-...|+.++ +..++++++....... +
T Consensus 110 lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~ 188 (337)
T PTZ00035 110 LLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIA 188 (337)
T ss_pred HhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceE
Confidence 3433334578999999999999999998875333211 112467898877777776 4455666554321100 0
Q ss_pred -cCC-CHHHHHHHH---HHHhc-CCceEEEEccCCC
Q 045386 273 -IGE-DYHLKKSIL---RDYLT-NKKYFIVRDDVFN 302 (706)
Q Consensus 273 -~~~-~~~~~~~~l---~~~L~-~kr~LlVlDdvw~ 302 (706)
... +.+++...+ ...+. ++--|||+|-+..
T Consensus 189 ~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 189 YARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred EEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 011 444444433 33333 3455899998754
No 365
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.36 E-value=0.09 Score=56.36 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=48.4
Q ss_pred cccccccHHHHHHHHhcC------------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC---CcceEEEecC-CC
Q 045386 187 VSEFERGREELFDLLIEG------------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF---DCLAWVRVSI-GY 250 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~-~~ 250 (706)
++|.++.+..+.-.+... +...+-|-++|++|+||||+|+.+.. .....| +..-++.... ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcccC
Confidence 889888888887666531 12346789999999999999999998 444444 3322222211 23
Q ss_pred CHHHHHHHHHHh
Q 045386 251 YFGKILDDIINS 262 (706)
Q Consensus 251 ~~~~i~~~il~~ 262 (706)
+.+++++.+...
T Consensus 92 dvE~i~r~l~e~ 103 (441)
T TIGR00390 92 DVESMVRDLTDA 103 (441)
T ss_pred CHHHHHHHHHHH
Confidence 566666666554
No 366
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.31 E-value=0.34 Score=52.18 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=55.4
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccc-cCC-cceEEEecCCCCH--HHHHHHHHHhcCCCCCCccccCCCHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKF-YFD-CLAWVRVSIGYYF--GKILDDIINSLMPPSRARVIIGEDYHLKKS 282 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~vs~~~~~--~~i~~~il~~l~~~~~~~~~~~~~~~~~~~ 282 (706)
..++|.++|..|+||||.+..+........ .-. .+..++. +++.. .+-++...+.++.+.. ...+.+++..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcceE----eeCcHHHHHH
Confidence 357999999999999999988876222111 112 2333433 33332 2335555555554322 0115555555
Q ss_pred HHHHHhcCCceEEEEccCCC---ChhhHHHHHhhcC
Q 045386 283 ILRDYLTNKKYFIVRDDVFN---DSDIWDDLEEVLP 315 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~---~~~~~~~l~~~l~ 315 (706)
.+.+. .+.=+|++|-... +.....++...+.
T Consensus 248 ~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 248 EITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 55543 3445778887754 2334455555554
No 367
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.30 E-value=0.36 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999864
No 368
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.30 E-value=0.086 Score=57.70 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=57.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC-CHHHHHHHHHHhcCCCCC-------CccccCC-CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY-YFGKILDDIINSLMPPSR-------ARVIIGE-DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~il~~l~~~~~-------~~~~~~~-~~~ 278 (706)
-.-++|.|.+|+|||||+.++.+.... .+-+.++++-+.+.. .+.++..++...-..... +++...- ...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 457999999999999999888874332 245677777776654 456666666543221110 0000000 122
Q ss_pred HHHHHHHHHh---cCCceEEEEccCCC
Q 045386 279 LKKSILRDYL---TNKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L---~~kr~LlVlDdvw~ 302 (706)
.....+.+++ ++|++|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 3344556666 37999999999843
No 369
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.27 E-value=0.27 Score=51.04 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=33.0
Q ss_pred HHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcce
Q 045386 282 SILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPIL 332 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v 332 (706)
-.|...|-.+.-+|+||+... |...-..+...+..- ..|..||++|.+...
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~ 208 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 345566667778999999877 444444454444422 236778888887654
No 370
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.26 E-value=0.26 Score=50.14 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 371
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.24 E-value=0.17 Score=50.13 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999864
No 372
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.22 E-value=0.2 Score=53.66 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=51.9
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILR 285 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~ 285 (706)
.-.++.|.|.+|+|||||+.++.. .....-..++|++..+. ..++ +.-+++++.....-.-... +.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 457999999999999999998886 33333345777765433 3333 2224555543221000122 5555555553
Q ss_pred HHhcCCceEEEEccCCC
Q 045386 286 DYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~ 302 (706)
+ .+.-+||+|.+..
T Consensus 156 ~---~~~~lVVIDSIq~ 169 (372)
T cd01121 156 E---LKPDLVIIDSIQT 169 (372)
T ss_pred h---cCCcEEEEcchHH
Confidence 2 3566899999754
No 373
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.21 E-value=0.27 Score=50.64 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=31.5
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v 332 (706)
.+...+-.+.=+++||.... |......+...+..- ..|..||++|.+...
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~ 199 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL 199 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 34445555667889999877 555555555555432 236678888877543
No 374
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.21 E-value=0.3 Score=48.92 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=32.7
Q ss_pred HHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcc
Q 045386 282 SILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPI 331 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~ 331 (706)
-.+...+-.+.=+++||..-. |......+...+..- ..|..||++|.+..
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 344555556667889998876 566666666655532 23778888887764
No 375
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.20 E-value=0.33 Score=54.83 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=65.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCc-cc--cCC---------------cceEEEecCCC------CH-----------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHV-KF--YFD---------------CLAWVRVSIGY------YF----------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~--~F~---------------~~~wv~vs~~~------~~----------- 252 (706)
-.+++|+|..|+|||||.+.+..-..- .. .|+ .+.|+ .+.+ ++
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~tv~e~l~~~~~~~ 114 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV--PQEPLLFPNLSVKENILFGLPKR 114 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE--eccCccCCCCcHHHHhhcccccc
Confidence 468999999999999999999864211 00 011 11222 2221 11
Q ss_pred ---HHHHHHHHHhcCCCCCCccccCC-C-HHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEE
Q 045386 253 ---GKILDDIINSLMPPSRARVIIGE-D-YHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVL 324 (706)
Q Consensus 253 ---~~i~~~il~~l~~~~~~~~~~~~-~-~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~Ii 324 (706)
.+-..++++.++........... + -+...-.|...|-.+.-+++||.--. |...-..+...+.. ...|..||
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 194 (510)
T PRK15439 115 QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIV 194 (510)
T ss_pred hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 12234556666554211101112 1 12223345555556677899998766 43333334333332 12367899
Q ss_pred EeeCCcce
Q 045386 325 ILVTDPIL 332 (706)
Q Consensus 325 vTTR~~~v 332 (706)
++|.+...
T Consensus 195 ivtHd~~~ 202 (510)
T PRK15439 195 FISHKLPE 202 (510)
T ss_pred EEeCCHHH
Confidence 99988644
No 376
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.20 E-value=0.33 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999864
No 377
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.20 E-value=0.13 Score=50.96 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=19.2
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999886
No 378
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.20 E-value=0.16 Score=53.15 Aligned_cols=91 Identities=12% Similarity=0.151 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecC-CCCHHHHHHHHHHhcCCCCCCcc--ccCC------CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSI-GYYFGKILDDIINSLMPPSRARV--IIGE------DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~il~~l~~~~~~~~--~~~~------~~~ 278 (706)
-..++|+|..|.|||||.+.+.+... . +..+..-+.. .-++.++....+..-+....--. ..++ -..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~--~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT--A--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999999998432 1 2333344433 33555655555544221110000 0011 111
Q ss_pred HHHHHHHHHh--cCCceEEEEccCCC
Q 045386 279 LKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
...-.+.+++ ++|.+||++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 2233334444 58999999999865
No 379
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=94.20 E-value=0.29 Score=50.63 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=30.0
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCC
Q 045386 193 GREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 193 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
.+-+++..|.+.+.....|.|+|.+|+||||++..+....
T Consensus 23 ~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 23 KLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred HHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444455555566788999999999999999999753
No 380
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.20 E-value=0.34 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 381
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.19 E-value=0.32 Score=50.16 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=32.6
Q ss_pred HHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCCcEEEEeeCCcce
Q 045386 282 SILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNGSRVLILVTDPIL 332 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v 332 (706)
-.+...|-.+.=+++||.... |...-..+...+.. ...|..||++|.+...
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 345556666777999999876 55555555555542 1236778888877543
No 382
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.16 E-value=0.16 Score=51.54 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=57.8
Q ss_pred cEEEEEEcCCCchhhHHH-HHHHcCCCccccCCcc-eEEEecCCC-CHHHHHHHHHHhcCCCCCCcc--ccCC--CH---
Q 045386 208 LSVIAILDSNGFDKTVFA-ADIYNNNHVKFYFDCL-AWVRVSIGY-YFGKILDDIINSLMPPSRARV--IIGE--DY--- 277 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~i~~~il~~l~~~~~~~~--~~~~--~~--- 277 (706)
=.-++|.|..|+|||+|| ..+.+. . +-+.+ +++-+.+.. .+.++..++.+.-.....--. ..++ ..
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 457899999999999995 667652 2 22333 556666654 455666666543211100000 0111 11
Q ss_pred -----HHHHHHHHHHhcCCceEEEEccCCCChhhHHHHHhhc
Q 045386 278 -----HLKKSILRDYLTNKKYFIVRDDVFNDSDIWDDLEEVL 314 (706)
Q Consensus 278 -----~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~~l~~~l 314 (706)
-.+++.+++ ++|..|||+||+-.-...|.++...+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEisl~~ 184 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQMSLLL 184 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHHHHhc
Confidence 123444444 57999999999876445666666554
No 383
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.15 E-value=0.32 Score=54.06 Aligned_cols=125 Identities=11% Similarity=0.054 Sum_probs=63.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc-c--cCCcc-eEEEe----cCCCCHHH------------------HHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK-F--YFDCL-AWVRV----SIGYYFGK------------------ILDDIIN 261 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~~-~wv~v----s~~~~~~~------------------i~~~il~ 261 (706)
-.+++|+|..|.|||||++.+....... + .|+.. ..+.. ....++.+ ...++++
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe 129 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIE 129 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998742211 1 11110 01111 11111111 1223444
Q ss_pred hcCCCCCCccccCC-CHHH-HHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEEEeeCCcce
Q 045386 262 SLMPPSRARVIIGE-DYHL-KKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVLILVTDPIL 332 (706)
Q Consensus 262 ~l~~~~~~~~~~~~-~~~~-~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v 332 (706)
.++........... +..+ ..-.|...|-...-+|+||.--. |......+...+.. ...|..||++|.+...
T Consensus 130 ~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 130 FADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred HcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 44432110001112 2222 22245555556677899998766 44444444444432 2347788999988643
No 384
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.13 E-value=0.24 Score=52.35 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=33.5
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
++|....+.++.+.+..-...-.-|-|+|..|.||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467766777777666543233456789999999999999999873
No 385
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.12 E-value=0.42 Score=46.85 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
.+...+-.+.=+++||+-.. |....+.+...+.....|..||++|.+...
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~ 186 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRT 186 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 34444455667889998876 555555555555543347778888877543
No 386
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.12 E-value=0.32 Score=51.03 Aligned_cols=138 Identities=11% Similarity=0.083 Sum_probs=74.0
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC----CC--------c-cccCCcceEEEecCCCCHH
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN----NH--------V-KFYFDCLAWVRVSIGYYFG 253 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~--------~-~~~F~~~~wv~vs~~~~~~ 253 (706)
++|-+..++.+.+.+..+. -....-++|..|+||+++|..+.+. .. + ...++...|+.=....+-+
T Consensus 6 iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred hCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 8899999999999887653 2478899999999999988666542 10 0 1112223444210000000
Q ss_pred HHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHHh-----cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEe
Q 045386 254 KILDDIINSLMPPSRARVIIGE-DYHLKKSILRDYL-----TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLIL 326 (706)
Q Consensus 254 ~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L-----~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivT 326 (706)
.+-.+-++..+..... ... ..+++ ..+.+.+ .+++-++|+|++.. .....+.+...+..-. .+.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~---~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi 159 (314)
T PRK07399 85 LITASEAEEAGLKRKA---PPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILI 159 (314)
T ss_pred ccchhhhhhccccccc---cccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEE
Confidence 0111111122111100 011 23332 2344444 34566889999876 4667777877776544 4466666
Q ss_pred eCCc
Q 045386 327 VTDP 330 (706)
Q Consensus 327 TR~~ 330 (706)
|.+.
T Consensus 160 ~~~~ 163 (314)
T PRK07399 160 APSP 163 (314)
T ss_pred ECCh
Confidence 6544
No 387
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.12 E-value=0.03 Score=54.63 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 388
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.11 E-value=0.26 Score=49.98 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 389
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.10 E-value=0.019 Score=56.80 Aligned_cols=182 Identities=18% Similarity=0.153 Sum_probs=111.0
Q ss_pred ccccCcccccEEEecCCCCC-cCCcc----ccccccCcEEEcccCCccccC--------------hhhcCCCCCcEEEcc
Q 045386 522 NFCKKFKHLRVLNFGSAVLD-QFPPG----LENLFLLKYLKLNIPSLKRLP--------------SLLCTLLNLETLEMP 582 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~-~lp~~----~~~L~~Lr~L~Ls~~~l~~lP--------------~~i~~L~~L~~L~L~ 582 (706)
+.+-+|++|+..+||.|.+. ..|+. +..-+.|.+|.+++|.+..+. +...+-+.|++.+..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 66788999999999999876 55543 566788999999999876442 223345789999999
Q ss_pred CCCCCccchhhc-----cccccceeee-cCccCCcc--------hhcCCccCcccccccccccCC---CCchhcCCCCCC
Q 045386 583 SSYIDQSPEDIW-----MMQKLMHLNF-GSITLPAP--------PKNYSSSLKNLIFISALNPSS---CTPDILDRLPSV 645 (706)
Q Consensus 583 ~~~~~~lP~~l~-----~L~~L~~L~l-~~~~lp~~--------i~~~l~~L~~L~~~~~~~~~~---~~~~~l~~L~~L 645 (706)
.|.+...|...+ .-.+|+.+.+ .+..-|.+ +. .+.+|+.|++.++..... .....+...+.|
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 998877775433 2247777777 22223443 34 456777777766543211 122235556678
Q ss_pred CeEEEEccC--CcCccchHHhcCC--CCCCcEEEEeeCCC--CCccc-----cCCcccccccceEEecccC
Q 045386 646 RTLRISGDL--SYYQSGVSKSLCE--LHKLECLKLVNESK--PSWMV-----LSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 646 ~~L~l~~~~--~~~~~~~~~~l~~--l~~L~~L~L~~~~~--~~l~~-----l~~~~~p~~L~~L~L~~n~ 705 (706)
+.|++..|- ..-...+...+.. .++|..|....+.. ..+.. +..... |-|..|.+.||+
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~-p~L~~le~ngNr 314 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAV-PLLVDLERNGNR 314 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhccc-HHHHHHHHccCc
Confidence 888887664 1122233344443 36777777776543 11111 111122 457777777665
No 390
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.32 Score=49.94 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||++.+...
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999874
No 391
>PRK03839 putative kinase; Provisional
Probab=94.09 E-value=0.034 Score=53.31 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|.|+|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998
No 392
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.06 E-value=0.029 Score=65.96 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=59.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRD 286 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (706)
+..++.|+|..|.||||+.+.+.... + ...+.++|.......+ .++..+...++....-..... +...-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~-l--~aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LS-tfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLA-L--MFQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLS-TFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHH-H--HHHhCCCccCCccccc-cchhheeeecChHhHHhhhhh-HHHHHHHHHHH
Confidence 35799999999999999999987530 0 0111122222111000 011111111111100000001 11111112233
Q ss_pred Hhc--CCceEEEEccCCC--ChhhHHHHHh-hcCC-CCCCcEEEEeeCCccee
Q 045386 287 YLT--NKKYFIVRDDVFN--DSDIWDDLEE-VLPD-KQNGSRVLILVTDPILL 333 (706)
Q Consensus 287 ~L~--~kr~LlVlDdvw~--~~~~~~~l~~-~l~~-~~~gs~IivTTR~~~v~ 333 (706)
.+. +++-|+++|..-. |..+...+.. .+.. ...|+.+|+||....+.
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 332 4789999999877 4444444422 2221 23578999999987765
No 393
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.06 E-value=0.0023 Score=61.72 Aligned_cols=81 Identities=19% Similarity=0.093 Sum_probs=58.8
Q ss_pred cCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeee
Q 045386 525 KKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNF 604 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l 604 (706)
..++...+||++.|++..+-..+..++.|..|+++.|.+..+|+.++.+..+..+++..|+.+.+|.+++.++.+++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34556677777777776666667777777777777777777777777777777777777777777777777777777777
Q ss_pred c
Q 045386 605 G 605 (706)
Q Consensus 605 ~ 605 (706)
.
T Consensus 119 k 119 (326)
T KOG0473|consen 119 K 119 (326)
T ss_pred c
Confidence 3
No 394
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.05 E-value=0.43 Score=49.51 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCCcEEEEeeCCcce
Q 045386 282 SILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNGSRVLILVTDPIL 332 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v 332 (706)
-.|...|-.+.-+|+||..-. |......+...+.. ...|..||++|.+...
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~ 206 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 345555556667899998776 45555555555442 1237789999988654
No 395
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.03 E-value=0.11 Score=61.53 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=35.7
Q ss_pred cccccccHHHHHHHHhcC-----------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEG-----------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.|.+..+++|.+++... -...+-|.++|.+|+||||||+.+++
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 899999999988876421 02346688999999999999999998
No 396
>PRK06217 hypothetical protein; Validated
Probab=94.02 E-value=0.084 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchhhHHHHHHHcC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
..|.|.|.+|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999984
No 397
>PRK04040 adenylate kinase; Provisional
Probab=94.00 E-value=0.041 Score=53.10 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=32.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMP 265 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~ 265 (706)
.++|.|+|++|+||||+++.+.. +....|. ++ +..++..+++...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~--~l~~~~~---~~------~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE--KLKEDYK---IV------NFGDVMLEVAKEEGL 48 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH--HhccCCe---EE------ecchHHHHHHHHcCC
Confidence 46899999999999999999988 4421222 22 334566666666654
No 398
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.99 E-value=0.054 Score=53.04 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.++.|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999983
No 399
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.99 E-value=0.36 Score=44.59 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=19.4
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 400
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.98 E-value=0.1 Score=56.97 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=55.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC-CHHHHHHHHHHhcCCCCCCcc--ccCC------CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY-YFGKILDDIINSLMPPSRARV--IIGE------DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~il~~l~~~~~~~~--~~~~------~~~ 278 (706)
-.-++|.|..|+|||||+.++......... +.++++-+.+.. .+.++..+++..=.....--. ..+. ...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~-~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHG-GYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCC-CEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 457899999999999999987653221111 346677776654 456666666653221100000 0011 112
Q ss_pred HHHHHHHHHh---cCCceEEEEccCCC
Q 045386 279 LKKSILRDYL---TNKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L---~~kr~LlVlDdvw~ 302 (706)
...-.+.+++ ++|.+||++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 2344566666 67999999999864
No 401
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.97 E-value=0.043 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++|.|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 402
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.95 E-value=0.064 Score=54.99 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 194 REELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+++.+... -+-+-++|..|+|||++++....
T Consensus 22 ~~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 22 YSYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhc
Confidence 34566666654 34568999999999999999886
No 403
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.95 E-value=0.18 Score=51.54 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=56.2
Q ss_pred ccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCC
Q 045386 188 SEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPS 267 (706)
Q Consensus 188 vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~ 267 (706)
.|...+..+.+..+.... -.+|.|.|..|.||||+++.+.+ .+...-..++.+.-...+.... ..++....
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~-----~~q~~v~~ 132 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPG-----INQVQVNE 132 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCC-----ceEEEeCC
Confidence 444444444444444333 45899999999999999998876 3322111122222111111111 01111010
Q ss_pred CCccccCCCHHHHHHHHHHHhcCCceEEEEccCCCChhhHHH
Q 045386 268 RARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFNDSDIWDD 309 (706)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~~ 309 (706)
. ........++..|+...=.|+++.+.+ .+....
T Consensus 133 ~-------~~~~~~~~l~~~lR~~PD~i~vgEiR~-~e~a~~ 166 (264)
T cd01129 133 K-------AGLTFARGLRAILRQDPDIIMVGEIRD-AETAEI 166 (264)
T ss_pred c-------CCcCHHHHHHHHhccCCCEEEeccCCC-HHHHHH
Confidence 0 112356667777877788899999998 554443
No 404
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.95 E-value=0.12 Score=56.00 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=62.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc--cCC---------cceEEEecCCCCHHHHHHHHHHhcC-CCCCCcc--cc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF--YFD---------CLAWVRVSIGYYFGKILDDIINSLM-PPSRARV--II 273 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~i~~~il~~l~-~~~~~~~--~~ 273 (706)
-.-++|.|-.|+|||||+.++.+..+... -.| .++++-+.+.....+.+.+.+..-+ ....--. ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 45789999999999999999987543210 012 5677778888666666666666555 2111000 00
Q ss_pred CC------CHHHHHHHHHHHhc---CCceEEEEccCCCChhhHHHHH
Q 045386 274 GE------DYHLKKSILRDYLT---NKKYFIVRDDVFNDSDIWDDLE 311 (706)
Q Consensus 274 ~~------~~~~~~~~l~~~L~---~kr~LlVlDdvw~~~~~~~~l~ 311 (706)
++ -.......+.++++ +|++|+++||+-.-...+.++.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REis 267 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVS 267 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHH
Confidence 11 11223444666665 5899999999965233333333
No 405
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.95 E-value=0.2 Score=54.83 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=57.1
Q ss_pred cEEEEEEcCCCchhhHHH-HHHHcCCCc-----cccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc---ccCC--C
Q 045386 208 LSVIAILDSNGFDKTVFA-ADIYNNNHV-----KFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV---IIGE--D 276 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~---~~~~--~ 276 (706)
-.-++|.|-.|+|||+|| -.+.+...+ .++-+.++++-+.+...--.-+.+.+++-+.-..... ..++ .
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 456899999999999997 666664322 1234567888888876433224444444431111000 0011 1
Q ss_pred H----HHHHHHHHHHh--cCCceEEEEccCCCChhhHHHH
Q 045386 277 Y----HLKKSILRDYL--TNKKYFIVRDDVFNDSDIWDDL 310 (706)
Q Consensus 277 ~----~~~~~~l~~~L--~~kr~LlVlDdvw~~~~~~~~l 310 (706)
. ......+.+++ +++..|||+||+-.....+.++
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REI 308 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHH
Confidence 1 11223333444 5799999999997633444444
No 406
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.16 Score=51.80 Aligned_cols=81 Identities=7% Similarity=0.071 Sum_probs=53.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCc--cccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHV--KFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
-++|-+.|++|.|||+|.+.++..-.+ ...|....-+.++. ..++.+.+.+-+. ....+-++|.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESgK----------lV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESGK----------LVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhhh----------HHHHHHHHHH
Confidence 588999999999999999999996433 34455555555533 3444444332111 5667778888
Q ss_pred HHhcCCceEE--EEccCCC
Q 045386 286 DYLTNKKYFI--VRDDVFN 302 (706)
Q Consensus 286 ~~L~~kr~Ll--VlDdvw~ 302 (706)
+.+.++..|+ .+|.|..
T Consensus 243 ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHhCCCcEEEEEeHHHHH
Confidence 8888765543 4676644
No 407
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.92 E-value=0.13 Score=51.30 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.4
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-|.|+|++|+||||+|+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 408
>PRK13409 putative ATPase RIL; Provisional
Probab=93.92 E-value=0.25 Score=56.66 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=66.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc-c--cCCc-ceEEEecCCC------CHHH-------------HHHHHHHhcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK-F--YFDC-LAWVRVSIGY------YFGK-------------ILDDIINSLM 264 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~-~~wv~vs~~~------~~~~-------------i~~~il~~l~ 264 (706)
-.+++|+|..|+|||||++.+....+-. . .|+. +.+ +.|.. ++.+ ...++++.++
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y--~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY--KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE--ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 4699999999999999999998742211 1 1111 111 22221 1221 2234455554
Q ss_pred CCCCCccccCC-C-HHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCccee
Q 045386 265 PPSRARVIIGE-D-YHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPILL 333 (706)
Q Consensus 265 ~~~~~~~~~~~-~-~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~ 333 (706)
........... + -+...-.|...|..+.-+++||.--. |...-..+...+... ..|..||++|.+...+
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~ 517 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMI 517 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 43111001222 2 22233445666667788999998665 444444444444421 2366788888876543
No 409
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.44 Score=55.91 Aligned_cols=129 Identities=11% Similarity=0.130 Sum_probs=80.3
Q ss_pred cccccccHHHHHHHHhcCC------CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEGP------SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDII 260 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 260 (706)
++|-++.+..|.+.+.... ...-..-+.|+.|+|||-||+.+.. -+-+..+..+-| |+.+... +.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~Iri------Dmse~~e-vs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRL------DMSEFQE-VS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEe------chhhhhh-hh
Confidence 7888888888888886532 1456777899999999999999887 342222333333 4444444 33
Q ss_pred HhcCCCCCCccccCCCHHHHHHHHHHHhcCCce-EEEEccCCC-ChhhHHHHHhhcCCC----C------CCcEEEEeeC
Q 045386 261 NSLMPPSRARVIIGEDYHLKKSILRDYLTNKKY-FIVRDDVFN-DSDIWDDLEEVLPDK----Q------NGSRVLILVT 328 (706)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdvw~-~~~~~~~l~~~l~~~----~------~gs~IivTTR 328 (706)
+-++.+.. .- -.+....|.+.++.+.| .|.||||.. +......+...+..+ . .+..|+|-|.
T Consensus 635 kligsp~g----yv--G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051|consen 635 KLIGSPPG----YV--GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred hccCCCcc----cc--cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEec
Confidence 33333221 11 12233477788888877 556899988 566667666666532 1 2356777776
Q ss_pred Cc
Q 045386 329 DP 330 (706)
Q Consensus 329 ~~ 330 (706)
+-
T Consensus 709 n~ 710 (898)
T KOG1051|consen 709 NV 710 (898)
T ss_pred cc
Confidence 64
No 410
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.87 E-value=0.14 Score=55.77 Aligned_cols=92 Identities=9% Similarity=0.087 Sum_probs=50.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc--ccCC------CHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV--IIGE------DYHL 279 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~--~~~~------~~~~ 279 (706)
-..++|.|..|+|||||++.+....... ..+++..--+.-.+.++.+.+...-.....--. ..+. -...
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 5689999999999999999998743321 123333322333455555555443211100000 0010 1122
Q ss_pred HHHHHHHHh--cCCceEEEEccCCC
Q 045386 280 KKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 280 ~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
..-.+.+++ ++|.+|+++||+-.
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 233344444 47999999999865
No 411
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.86 E-value=0.29 Score=51.32 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.+..-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999974
No 412
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.86 E-value=0.069 Score=48.95 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=33.5
Q ss_pred EEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCC
Q 045386 210 VIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPP 266 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~ 266 (706)
+|.|-|.+|+||||+|+.+.++ ..-.| .+...++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLKL-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCce-----------eeccHHHHHHHHHcCCC
Confidence 6899999999999999999983 22221 13457888888887765
No 413
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.49 Score=53.79 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=31.4
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCccee
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPILL 333 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~ 333 (706)
.|...|-.+.-+++||.-.+ |...-..+...+.. .|..||++|.+....
T Consensus 165 ~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~ 215 (530)
T PRK15064 165 LLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFL 215 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHH
Confidence 44445555667899998877 54444555555542 366788888887543
No 414
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.84 E-value=0.057 Score=53.09 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=52.1
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC-CHHHHHHHHHHhcCCCCCCc-c-ccCCCH--------
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY-YFGKILDDIINSLMPPSRAR-V-IIGEDY-------- 277 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~il~~l~~~~~~~-~-~~~~~~-------- 277 (706)
.-++|+|..|+|||+|++.+.++.. =+..+++.+.+.. .+.++.+++...-......- . ..++..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5789999999999999999988432 2234777777663 45556665543311100000 0 001111
Q ss_pred --HHHHHHHHHHhcCCceEEEEccCCC
Q 045386 278 --HLKKSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 278 --~~~~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
-.+.+++++ ++|..|+++||+-.
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred cchhhhHHHhh--cCCceeehhhhhHH
Confidence 123444444 68999999999754
No 415
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.83 E-value=0.11 Score=55.88 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=48.8
Q ss_pred cccccccHHHHHHHHhcC------------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC---CcceEEEec-CCC
Q 045386 187 VSEFERGREELFDLLIEG------------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF---DCLAWVRVS-IGY 250 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~~~ 250 (706)
++|.++.+..+..++... +...+.|.++|++|+||||+|+.+.. .....| +..-|.... ...
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCcccC
Confidence 889999999888777431 11246789999999999999999988 444433 332222211 122
Q ss_pred CHHHHHHHHHHhc
Q 045386 251 YFGKILDDIINSL 263 (706)
Q Consensus 251 ~~~~i~~~il~~l 263 (706)
+.+.+.++++...
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 5566666665544
No 416
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.83 E-value=0.38 Score=54.10 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.++..
T Consensus 29 Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 29 GDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999864
No 417
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.82 E-value=0.037 Score=53.17 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhhHHHHHHHcC
Q 045386 210 VIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999983
No 418
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.82 E-value=0.39 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-+++.++|.+|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999998877765
No 419
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.80 E-value=0.19 Score=52.38 Aligned_cols=90 Identities=12% Similarity=0.016 Sum_probs=55.6
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc-ccCCCHHHHHHHH
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV-IIGEDYHLKKSIL 284 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~-~~~~~~~~~~~~l 284 (706)
+.-+++-|+|..|+||||||-++.. .....-..++||+....+|.. .+++++.....-. ..+...++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 3467999999999999999999887 554444568999887777654 3555555432100 0011455666666
Q ss_pred HHHhcC-CceEEEEccCCC
Q 045386 285 RDYLTN-KKYFIVRDDVFN 302 (706)
Q Consensus 285 ~~~L~~-kr~LlVlDdvw~ 302 (706)
.+.++. .--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 666654 445899998764
No 420
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.78 E-value=0.075 Score=47.82 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=28.1
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 193 GREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 193 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+..++.+.|...=..-.+|.+.|.-|.||||+++.+...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344454544432123468999999999999999999984
No 421
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.77 E-value=0.13 Score=56.12 Aligned_cols=94 Identities=9% Similarity=0.104 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCC-HHHHHHHHHHhcCCCC-------CCccccCC-CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYY-FGKILDDIINSLMPPS-------RARVIIGE-DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~il~~l~~~~-------~~~~~~~~-~~~ 278 (706)
-.-++|.|.+|+|||+|+.++..+.. +.+-+.++++-+.+... +.++.+++...-.... .+++.... -..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 45789999999999999999877532 23346788888877654 4566666554311110 00000000 122
Q ss_pred HHHHHHHHHhc---CCceEEEEccCCC
Q 045386 279 LKKSILRDYLT---NKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L~---~kr~LlVlDdvw~ 302 (706)
...-.+.++++ ++++|+++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 33445666664 5899999999865
No 422
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.74 E-value=0.36 Score=51.42 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=32.4
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v 332 (706)
.|...|-.+.-+++||.--. |......+...+..- ..|..||++|.+...
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV 203 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 44555556677899998766 555555555555432 236789999987654
No 423
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.73 E-value=0.3 Score=55.53 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=36.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
++|....+.++++.+..-...-.-|-|+|..|.|||++|+.+++.
T Consensus 198 liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 198 IIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred eEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 999999999988877643223445779999999999999999984
No 424
>PRK13409 putative ATPase RIL; Provisional
Probab=93.71 E-value=0.27 Score=56.36 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 99 Gev~gLvG~NGaGKSTLlkiL~G~ 122 (590)
T PRK13409 99 GKVTGILGPNGIGKTTAVKILSGE 122 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 425
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.71 E-value=0.15 Score=55.29 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=52.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCC-HHHHHHHHHHhcCCCCCCcc-c-cCCCH------H
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYY-FGKILDDIINSLMPPSRARV-I-IGEDY------H 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~il~~l~~~~~~~~-~-~~~~~------~ 278 (706)
-..++|.|..|+|||||.+.+++... -+.++++-+.+... +.++..+.+..-+....--. . .+... .
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 56899999999999999999998432 24567777766643 44444443332111100000 0 01111 1
Q ss_pred HHHHHHHHHh--cCCceEEEEccCCC
Q 045386 279 LKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
...-.+.+++ ++|++|+++||+-.
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122334444 58999999999865
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.69 E-value=0.61 Score=49.61 Aligned_cols=101 Identities=9% Similarity=-0.018 Sum_probs=54.4
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecC-CCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSI-GYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSIL 284 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l 284 (706)
+.++|.++|..|+||||++..+... ....=..+.+|+... .....+-++...+.++.+.. .. +..++...+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-----~~~dp~dL~~al 277 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-----VATSPAELEEAV 277 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-----ecCCHHHHHHHH
Confidence 4689999999999999999888762 222112344454321 22234445555555543321 12 555665555
Q ss_pred HHHhc-CCceEEEEccCCC---ChhhHHHHHhhc
Q 045386 285 RDYLT-NKKYFIVRDDVFN---DSDIWDDLEEVL 314 (706)
Q Consensus 285 ~~~L~-~kr~LlVlDdvw~---~~~~~~~l~~~l 314 (706)
...-. +..=+|++|-... +....+++....
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 44321 3345677776644 233344444433
No 427
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.14 Score=57.29 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=43.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCC--CCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIG--YYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
..-|-|.|..|+|||+||+.+++... +.+.-.+.+|+.|.- -..+.++ ..+...+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQ---------------------k~l~~vfs 488 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQ---------------------KFLNNVFS 488 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHH---------------------HHHHHHHH
Confidence 45688999999999999999999433 222222333333211 1111111 12233444
Q ss_pred HHhcCCceEEEEccCCC
Q 045386 286 DYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~ 302 (706)
+.+....-+|||||+.-
T Consensus 489 e~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHhhCCcEEEEcchhh
Confidence 55566789999999853
No 428
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.4 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 28 GEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999974
No 429
>PRK14528 adenylate kinase; Provisional
Probab=93.68 E-value=0.23 Score=47.87 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.|.|.|.+|+||||+|+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999976
No 430
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.68 E-value=0.049 Score=52.12 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchhhHHHHHHHcC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.++.|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 431
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.68 E-value=0.056 Score=53.07 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=25.6
Q ss_pred HHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 200 LLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 200 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
|+.++....+.|.|+|.+|+|||||++.+..
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3444455688999999999999999999976
No 432
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.66 E-value=0.13 Score=55.89 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecC-CCCHHHHHHHHHHhcCCCCCCcc--ccCC-C-----HH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSI-GYYFGKILDDIINSLMPPSRARV--IIGE-D-----YH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~il~~l~~~~~~~~--~~~~-~-----~~ 278 (706)
-..++|+|..|+|||||++.+....+ . +..+.+.+.+ .-.+.++..+.+..-+....--. ..+. . ..
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~--~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD--A--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999987432 1 2222233333 33455555554443221110000 0011 1 11
Q ss_pred HHHHHHHHHh--cCCceEEEEccCCC
Q 045386 279 LKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
.....+.+++ +++..||++||+-.
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 2233345555 57899999999865
No 433
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.65 E-value=0.15 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.-.+|+|+|.+|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988776
No 434
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.65 E-value=0.39 Score=49.42 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.++.-
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 458999999999999999999864
No 435
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.64 E-value=0.16 Score=57.18 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=37.8
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
++|....+.++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 189 iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred eeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 899999888888887654334567889999999999999999984
No 436
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.64 E-value=0.06 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 437
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.63 E-value=0.34 Score=48.74 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=57.0
Q ss_pred HhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCC-----------
Q 045386 201 LIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRA----------- 269 (706)
Q Consensus 201 L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~----------- 269 (706)
|..+=+.-+++.|.|.+|.|||++|.++... .. ..=+.++||+... +..++.+.+. +++.....
T Consensus 14 l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d 88 (237)
T TIGR03877 14 LHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVD 88 (237)
T ss_pred hcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEe
Confidence 3333345789999999999999999876542 12 2235678887655 4445555432 33321100
Q ss_pred ------------cc-c-cCC-CHHHHHHHHHHHhcC-CceEEEEccCCC
Q 045386 270 ------------RV-I-IGE-DYHLKKSILRDYLTN-KKYFIVRDDVFN 302 (706)
Q Consensus 270 ------------~~-~-~~~-~~~~~~~~l~~~L~~-kr~LlVlDdvw~ 302 (706)
.. . .+. +.+++...+++.++. +.-++|+|.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 89 AFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred ccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 00 0 012 566777777777654 344689998754
No 438
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.63 E-value=0.047 Score=54.78 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=16.7
Q ss_pred EEcCCCchhhHHHHHHHcC
Q 045386 213 ILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 213 I~G~gGiGKTtLa~~v~~~ 231 (706)
|+|++|+||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999999874
No 439
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.49 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 440
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.61 E-value=0.51 Score=49.05 Aligned_cols=125 Identities=11% Similarity=0.123 Sum_probs=66.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc----cCC------------cceEEEecC----CCCH---------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF----YFD------------CLAWVRVSI----GYYF--------------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~------------~~~wv~vs~----~~~~--------------- 252 (706)
-.++++.|..|.|||||.+.+..-.+-.. .+. .+.++.-.. ..++
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~ 110 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK 110 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh
Confidence 46999999999999999999997432110 010 122221111 1112
Q ss_pred ---HHHHHHHHHhcCCCCCCccccCC---CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC-CCCC-cE
Q 045386 253 ---GKILDDIINSLMPPSRARVIIGE---DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD-KQNG-SR 322 (706)
Q Consensus 253 ---~~i~~~il~~l~~~~~~~~~~~~---~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~-~~~g-s~ 322 (706)
.+-..++++.++........... ...+. -.|...|-++.=+++||.--+ |...-..+...+.. ...| ..
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqr-l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~t 189 (293)
T COG1131 111 EEAEERIEELLELFGLEDKANKKVRTLSGGMKQR-LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVT 189 (293)
T ss_pred hHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHH-HHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcE
Confidence 23445566666665411001111 22222 244555567778999998766 44433344443332 1223 67
Q ss_pred EEEeeCCccee
Q 045386 323 VLILVTDPILL 333 (706)
Q Consensus 323 IivTTR~~~v~ 333 (706)
|++||....-+
T Consensus 190 vlissH~l~e~ 200 (293)
T COG1131 190 ILLSTHILEEA 200 (293)
T ss_pred EEEeCCcHHHH
Confidence 99999775443
No 441
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.60 E-value=0.091 Score=58.15 Aligned_cols=103 Identities=14% Similarity=0.052 Sum_probs=53.6
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc-cCCcce-EEEecCCCC-HHHHHHHHHHhcCCCCCCcccc
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF-YFDCLA-WVRVSIGYY-FGKILDDIINSLMPPSRARVII 273 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~-wv~vs~~~~-~~~i~~~il~~l~~~~~~~~~~ 273 (706)
++++|..-. .-.-..|+|.+|+|||||++.+.+ .+.. +=++.+ .+-|.+... +.++.+.+-..+-....+.+..
T Consensus 406 vIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 406 VIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHH
Confidence 444444321 235688999999999999999998 4432 223333 344555432 3333332200010011100000
Q ss_pred CC-CHHHHHHHHHHHh--cCCceEEEEccCCC
Q 045386 274 GE-DYHLKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 274 ~~-~~~~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
.- ....+.-.+.+++ .++.+||++|++-.
T Consensus 483 ~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 483 DHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 00 2233344455555 67999999999865
No 442
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.58 E-value=0.19 Score=47.99 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.1
Q ss_pred EEEEEcCCCchhhHHHHHHHcC
Q 045386 210 VIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.|.|+|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 443
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.57 E-value=0.18 Score=54.68 Aligned_cols=91 Identities=10% Similarity=0.140 Sum_probs=50.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC-CHHHHHHHHHHhcCCC-------CCCccccCC-CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY-YFGKILDDIINSLMPP-------SRARVIIGE-DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~il~~l~~~-------~~~~~~~~~-~~~ 278 (706)
-..++|+|..|+|||||++.+.+.... +..+.+.+.+.. .+.++..+....-... ..+++.... -..
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~~----~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTEA----DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC----CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 457999999999999999999873321 233444555543 3444444444331111 000000000 111
Q ss_pred HHHHHHHHHh--cCCceEEEEccCCC
Q 045386 279 LKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
...-.+.+++ +++++||++||+-.
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 2223334444 58999999999865
No 444
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.56 E-value=0.22 Score=57.98 Aligned_cols=89 Identities=16% Similarity=0.045 Sum_probs=59.3
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHH
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSIL 284 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l 284 (706)
+.-+++-|.|.+|+||||||.+++.. ....=..++|++....++. ..+++++.....-.-... +.++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45788999999999999999776652 2222245789987777774 367777765332111112 556666677
Q ss_pred HHHhcC-CceEEEEccCC
Q 045386 285 RDYLTN-KKYFIVRDDVF 301 (706)
Q Consensus 285 ~~~L~~-kr~LlVlDdvw 301 (706)
...++. +--|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 776654 55689999875
No 445
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.63 Score=47.03 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999863
No 446
>PRK00625 shikimate kinase; Provisional
Probab=93.51 E-value=0.049 Score=51.73 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.5
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.49 E-value=0.17 Score=55.05 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc--ccCC------CHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV--IIGE------DYHL 279 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~--~~~~------~~~~ 279 (706)
-..++|+|..|+|||||++.+....+.. ..++...--+...+.++....+..-+....--. ..+. ....
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 4588999999999999999998854321 123322222335666766666555332111000 0011 1122
Q ss_pred HHHHHHHHh--cCCceEEEEccCCCChhhHHHHHhh
Q 045386 280 KKSILRDYL--TNKKYFIVRDDVFNDSDIWDDLEEV 313 (706)
Q Consensus 280 ~~~~l~~~L--~~kr~LlVlDdvw~~~~~~~~l~~~ 313 (706)
....+.+++ ++|..||++||+-.-.+...++...
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~ 268 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIA 268 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHH
Confidence 233344444 4789999999997733333444433
No 448
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.48 E-value=0.087 Score=58.76 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=27.6
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.++.+.....+..+|+|.|.+|.||||||+.+..
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 3444444555689999999999999999999987
No 449
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.45 E-value=0.2 Score=51.39 Aligned_cols=91 Identities=13% Similarity=0.031 Sum_probs=48.4
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccc--cCC-CHHHHHH
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVI--IGE-DYHLKKS 282 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~--~~~-~~~~~~~ 282 (706)
.+..+|.|+|.+|.|||||+..+.+ ....... .+.+ ..+..+..+ .+.+...+.+.-.... .-- +...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4689999999999999999999988 4444332 2222 222122221 2223333322110000 001 3334445
Q ss_pred HHHHHhcCCceEEEEccCCC
Q 045386 283 ILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~ 302 (706)
.+...-...-=+||+++|.+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55554444446778898865
No 450
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.45 E-value=0.039 Score=48.93 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=19.2
Q ss_pred EEEEcCCCchhhHHHHHHHcCCCccccCC
Q 045386 211 IAILDSNGFDKTVFAADIYNNNHVKFYFD 239 (706)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 239 (706)
|-|+|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 57899999999999999999 6777774
No 451
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.44 E-value=0.054 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
..+|+|-||-|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 578999999999999999999983
No 452
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.42 E-value=0.045 Score=30.12 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=4.0
Q ss_pred CcEEEcccCCccc
Q 045386 553 LKYLKLNIPSLKR 565 (706)
Q Consensus 553 Lr~L~Ls~~~l~~ 565 (706)
|+.|+|++|.++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3344444443333
No 453
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.41 E-value=0.52 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999864
No 454
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.41 E-value=0.4 Score=51.95 Aligned_cols=44 Identities=20% Similarity=0.180 Sum_probs=33.9
Q ss_pred cccccccHHHHHHHHh-------c---CC--C----CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLI-------E---GP--S----GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~-------~---~~--~----~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.++.++.+...+. . .. + ....|.++|.+|+|||++|+.+..
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 8999999888866551 1 11 1 135789999999999999999986
No 455
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.39 E-value=0.079 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIY 229 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~ 229 (706)
-+++.|.|..|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3799999999999999999987
No 456
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.37 E-value=0.23 Score=50.43 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=76.6
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceE-EEecCCCCHHHHHHHHHHhc
Q 045386 185 LDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAW-VRVSIGYYFGKILDDIINSL 263 (706)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~i~~~il~~l 263 (706)
.+++|-+..+.-+.+.+... ...+...+|++|-|||+-|..+...---.+.|.+++- .++|..-.+.-+-.++
T Consensus 36 de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki---- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI---- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh----
Confidence 33999999999999998874 3788899999999999988887762212455666443 3344332211000000
Q ss_pred CCCCCCccccCCCHHHHHHHHHHHh--cCCce-EEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 264 MPPSRARVIIGEDYHLKKSILRDYL--TNKKY-FIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~-LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
. +...+........ ..++| .||||++.. ..+.|..++.........++-|+.|-.
T Consensus 110 ----k-------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 110 ----K-------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred ----c-------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 0 1111111111000 11343 678998877 578999999988776666665555433
No 457
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.37 E-value=0.051 Score=52.05 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.8
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 458
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.18 Score=55.63 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=45.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
..=|-++|++|+|||-||+.|.| +.+-.| ++|-.+ + ++...-+. ++..+.+..++.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----E----LlNkYVGE---------SErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----E----LLNKYVGE---------SERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----H----HHHHHhhh---------HHHHHHHHHHHh
Confidence 45577899999999999999999 666666 444333 1 22221111 333334444444
Q ss_pred hcCCceEEEEccCCC
Q 045386 288 LTNKKYFIVRDDVFN 302 (706)
Q Consensus 288 L~~kr~LlVlDdvw~ 302 (706)
=..-.|.|++|.+..
T Consensus 601 R~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDA 615 (802)
T ss_pred hcCCCeEEEecchhh
Confidence 456799999998854
No 459
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.35 E-value=0.069 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+|.|+|.+|+||||+|+.+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999988
No 460
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.35 E-value=0.18 Score=52.15 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v 332 (706)
.|...|-.+.=+|+||..-. |......+...+..- ..|..||++|.+...
T Consensus 150 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 44455555667999998876 555566666655532 237788888877644
No 461
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.32 E-value=0.061 Score=51.48 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.|+|..|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999998
No 462
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.31 E-value=0.23 Score=52.84 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCccee
Q 045386 282 SILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPILL 333 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~ 333 (706)
-.|...|..+.-++++|.--+ |...-..+...+..- ..|..||++|.+..++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v 204 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVV 204 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 345555666777899998776 444444444444421 2367899999887654
No 463
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.28 E-value=0.59 Score=52.48 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 276 DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 276 ~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
.-+...-.|.+.|-.+.=+|+||.=-+ |.+....+...+... +| .+||+|.++.-
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~F 212 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYF 212 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHH
Confidence 344556677778888888999998776 445555566666533 35 78999988743
No 464
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.27 E-value=0.49 Score=47.28 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=33.3
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMP 265 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~ 265 (706)
.-.++.|.|.+|.||||+|.++... -.+.. ..+++++ ..-+..++.+.+ .+++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~--~e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVS--TQLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEe--CCCCHHHHHHHH-HHhCC
Confidence 3569999999999999998555442 22222 3355665 333456666665 34443
No 465
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.26 E-value=0.98 Score=49.47 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=77.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCC-----cc----ccCC---c--------ceEEE-
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNH-----VK----FYFD---C--------LAWVR- 245 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~----~~F~---~--------~~wv~- 245 (706)
-+|.++.. -|.+-|.-+-..-.-|++||..|+||+||.+.++-+.. +. .+|. . ..|..
T Consensus 396 ~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le 474 (614)
T KOG0927|consen 396 SFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLE 474 (614)
T ss_pred ccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHH
Confidence 55666555 55555544423346789999999999999999998631 11 1121 1 01100
Q ss_pred -ec---CCCCHHHHHHHHHHhcCCCCCCcc-ccCC-CHHHHHHHH-HHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC
Q 045386 246 -VS---IGYYFGKILDDIINSLMPPSRARV-IIGE-DYHLKKSIL-RDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD 316 (706)
Q Consensus 246 -vs---~~~~~~~i~~~il~~l~~~~~~~~-~~~~-~~~~~~~~l-~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~ 316 (706)
+- .+-...+..+.|+..++.....+. .+.. +..+....+ ....-...-+||||.--+ |...-+.+..++..
T Consensus 475 ~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 475 FMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE 554 (614)
T ss_pred HHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc
Confidence 00 012455677888888887754321 1111 222222222 222345678999998776 45556666666654
Q ss_pred CCCCcEEEEeeCCc
Q 045386 317 KQNGSRVLILVTDP 330 (706)
Q Consensus 317 ~~~gs~IivTTR~~ 330 (706)
.. |. ||++|.+-
T Consensus 555 ~~-Gg-vv~vSHDf 566 (614)
T KOG0927|consen 555 FP-GG-VVLVSHDF 566 (614)
T ss_pred cC-Cc-eeeeechh
Confidence 43 33 55565554
No 466
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.25 E-value=0.063 Score=50.92 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999988
No 467
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.23 E-value=0.45 Score=51.22 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999999874
No 468
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.21 E-value=0.66 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999999999864
No 469
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.20 E-value=0.17 Score=54.94 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=33.5
Q ss_pred cccccccHHHHHHHHhc-------C-----C--CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIE-------G-----P--SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~-------~-----~--~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..++.+...+.. . + ....-|.++|.+|+|||++|+.+..
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 89999988887555421 1 0 1235688999999999999999987
No 470
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.19 E-value=0.14 Score=52.37 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=17.7
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..|.|.|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999999987
No 471
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=93.17 E-value=0.54 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|.|||||++.+..-
T Consensus 23 Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999875
No 472
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.17 E-value=0.78 Score=53.31 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+...
T Consensus 27 Ge~v~LvG~NGsGKSTLLkiL~G~ 50 (638)
T PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999985
No 473
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.16 E-value=0.079 Score=48.78 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=35.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCc-cccCCcceEEEecCCCCHHHHHHHHHHhcCCCCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHV-KFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSR 268 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~ 268 (706)
.+++.|+|.+|+||||+.+.+-. .. ..+ -.|...+.-+++...+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~--~l~~~~-----------ivNyG~~Mle~A~k~glve~ 52 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK--ELVKHK-----------IVNYGDLMLEIAKKKGLVEH 52 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH--HHhhce-----------eeeHhHHHHHHHHHhCCccc
Confidence 68999999999999999988876 33 111 12556777777777776644
No 474
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.13 E-value=0.49 Score=48.97 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=32.1
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v 332 (706)
.|...|-.++=+++||.... |......+...+..- ..|..||++|.+...
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~ 204 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI 204 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 44455556667899998877 555555555555422 236788888877654
No 475
>PRK05922 type III secretion system ATPase; Validated
Probab=93.13 E-value=0.35 Score=52.51 Aligned_cols=100 Identities=8% Similarity=0.059 Sum_probs=53.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCC-CCHHHHHHHHHHhcCCCCCCcc--ccCC------CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIG-YYFGKILDDIINSLMPPSRARV--IIGE------DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~il~~l~~~~~~~~--~~~~------~~~ 278 (706)
-..++|+|..|+|||||.+.+..... -+....+-+.+. -.+.+.+.+..........--. ..+. -..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 45689999999999999999987321 233333333333 2334444444433322211000 0011 111
Q ss_pred HHHHHHHHHh--cCCceEEEEccCCCChhhHHHHH
Q 045386 279 LKKSILRDYL--TNKKYFIVRDDVFNDSDIWDDLE 311 (706)
Q Consensus 279 ~~~~~l~~~L--~~kr~LlVlDdvw~~~~~~~~l~ 311 (706)
...-.+.+++ +|+++|+++||+-.-.....++.
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REis 267 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVA 267 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHH
Confidence 2233344444 57999999999865233333333
No 476
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.12 E-value=0.46 Score=48.50 Aligned_cols=91 Identities=12% Similarity=-0.050 Sum_probs=58.1
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHh-cCCCCCCccccCCCHHH---HH
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINS-LMPPSRARVIIGEDYHL---KK 281 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~-l~~~~~~~~~~~~~~~~---~~ 281 (706)
+.-+++=|+|..|.||||+|-+++- ..+..-..++|++--..+++..+. .|... +..-.-. ... +.++ ++
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~--~~~-~~e~q~~i~ 131 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVS--QPD-TGEQQLEIA 131 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEe--cCC-CHHHHHHHH
Confidence 5678999999999999999988877 344444478999999989887753 33333 2111100 011 3333 33
Q ss_pred HHHHHHhcCCceEEEEccCCC
Q 045386 282 SILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 282 ~~l~~~L~~kr~LlVlDdvw~ 302 (706)
+.+......+--|||+|-|-.
T Consensus 132 ~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 132 EKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHHhccCCCCEEEEecCcc
Confidence 444444444466999998865
No 477
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.12 E-value=0.24 Score=54.17 Aligned_cols=93 Identities=10% Similarity=0.093 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCC-------CCCCccccCC-CHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMP-------PSRARVIIGE-DYH 278 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~-------~~~~~~~~~~-~~~ 278 (706)
.-..++|+|..|+|||||++.+....... ..++++.--+.-++.++..+.+..-.. ...+++.... ...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999998743221 123333222223344443332211100 0010000000 112
Q ss_pred HHHHHHHHHh--cCCceEEEEccCCC
Q 045386 279 LKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
.....+.+++ +++.+||++||+-.
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 2333444444 57999999999854
No 478
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.11 E-value=0.91 Score=51.91 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+...
T Consensus 33 Ge~~~iiG~NGsGKSTLlk~i~G~ 56 (556)
T PRK11819 33 GAKIGVLGLNGAGKSTLLRIMAGV 56 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999985
No 479
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.11 E-value=0.19 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++++|..|.|||||.+.+..-
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999999874
No 480
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.10 E-value=0.13 Score=50.34 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=23.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
....|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 46789999999999999999998864
No 481
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.08 E-value=0.072 Score=48.68 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCcc-ccCCcceEEEec
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVK-FYFDCLAWVRVS 247 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs 247 (706)
++|.|+|..|+|||||++.+.+ ... ..+...+..+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTD 38 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-S
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEcc
Confidence 4899999999999999999998 444 334434344433
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.05 E-value=0.11 Score=47.23 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=48.9
Q ss_pred EEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcC
Q 045386 211 IAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYLTN 290 (706)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 290 (706)
|-++|.+|+|||+||+.++. ..... ..-+.++...+..++....--. ..... +. ...+...++
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~~---~~~i~~~~~~~~~dl~g~~~~~-~~~~~----~~--~~~l~~a~~----- 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGRP---VIRINCSSDTTEEDLIGSYDPS-NGQFE----FK--DGPLVRAMR----- 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTCE---EEEEE-TTTSTHHHHHCEEET--TTTTC----EE--E-CCCTTHH-----
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhcc---eEEEEeccccccccceeeeeec-ccccc----cc--ccccccccc-----
Confidence 57899999999999999998 44221 2335667777776655432211 01100 00 000111111
Q ss_pred CceEEEEccCCC-ChhhHHHHHhhcC
Q 045386 291 KKYFIVRDDVFN-DSDIWDDLEEVLP 315 (706)
Q Consensus 291 kr~LlVlDdvw~-~~~~~~~l~~~l~ 315 (706)
+...+|||++.. +...+..+...+.
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHHS
T ss_pred ceeEEEECCcccCCHHHHHHHHHHHh
Confidence 788999999985 3555555555553
No 483
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.03 E-value=1 Score=48.96 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.++|.+|+||||++..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999887765
No 484
>PRK13947 shikimate kinase; Provisional
Probab=93.03 E-value=0.063 Score=50.88 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=19.7
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 485
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.03 E-value=0.077 Score=54.69 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=42.9
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccC-C-cceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYF-D-CLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSI 283 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~ 283 (706)
...+|||.|..|+||||+|+.+.. ...... . .+..++...-+...+.. ++.+...... ..+. +.+.+...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l----~~~g~~~~~g-~P~s~D~~~l~~~ 133 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVL----KERNLMKKKG-FPESYDMHRLVKF 133 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHH----HHcCCccccC-CChhccHHHHHHH
Confidence 478999999999999999987754 222211 1 23333332222222222 2222111100 1233 77888888
Q ss_pred HHHHhcCCc
Q 045386 284 LRDYLTNKK 292 (706)
Q Consensus 284 l~~~L~~kr 292 (706)
+...-.|+.
T Consensus 134 L~~Lk~g~~ 142 (290)
T TIGR00554 134 LSDLKSGKP 142 (290)
T ss_pred HHHHHCCCC
Confidence 877776653
No 486
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.02 E-value=0.23 Score=50.39 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.1
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 487
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.02 E-value=0.43 Score=47.61 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=31.5
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
.|...|-.+.-+++||.-.. |....+.+...+..-..|..||++|.+...
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 200 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLST 200 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 44455556667899998776 555555555555432346778888877643
No 488
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=93.02 E-value=0.63 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.++.-
T Consensus 30 Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 30 GRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999864
No 489
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.01 E-value=0.22 Score=54.33 Aligned_cols=91 Identities=10% Similarity=0.116 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC-CHHHHHHHHHHhcCCCCCCcc--ccCC------CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY-YFGKILDDIINSLMPPSRARV--IIGE------DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~il~~l~~~~~~~~--~~~~------~~~ 278 (706)
-..++|+|..|+|||||++.+..... .+.++...+.... ++.++...+...-.....--. ..+. ...
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 45799999999999999999987321 2333333444432 455555555443222110000 0011 111
Q ss_pred HHHHHHHHHh--cCCceEEEEccCCC
Q 045386 279 LKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
.....+.+++ +++++||++||+-.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhH
Confidence 2223344444 57999999999865
No 490
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.01 E-value=0.16 Score=54.09 Aligned_cols=111 Identities=11% Similarity=0.038 Sum_probs=63.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
-..|.|.|..|.||||+++.+.+ .+......+++. +.++... ........+... ....+.....+.++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~-----evg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNKRSLINQR-----EVGLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCccceEEcc-----ccCCCCcCHHHHHHHh
Confidence 46899999999999999999887 455445555543 2222111 000000000000 0011223456667888
Q ss_pred hcCCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 288 LTNKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 288 L~~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
|+...=.|++|.+.+ .+.+...... ...|..|+.|+....+
T Consensus 192 lr~~pd~i~vgEird-~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 192 LREDPDVILIGEMRD-LETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred hccCCCEEEEeCCCC-HHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 888888999999987 6666543332 2345556666655444
No 491
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.01 E-value=0.096 Score=48.52 Aligned_cols=35 Identities=17% Similarity=-0.051 Sum_probs=26.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEE
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWV 244 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 244 (706)
..||=|.|.+|.||||||+.+.. +....-..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 35888999999999999999998 655544445555
No 492
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.97 E-value=0.3 Score=57.84 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=34.2
Q ss_pred cccccccHHHHHHHHhcC-----------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEG-----------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.|.+..++.+.+.+.-. -...+-|.++|.+|+|||++|+.+.+
T Consensus 455 i~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 455 IGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred cccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 888888888877765421 12345588899999999999999998
No 493
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.96 E-value=0.41 Score=46.09 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=55.6
Q ss_pred EEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhc
Q 045386 210 VIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYLT 289 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 289 (706)
++.|.|..|.||||+.+.+.-.. +-.+-.+ +|.... +.+ .....++..++.......+.. ....-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~--~v~a~~-~~~-~~~d~il~~~~~~d~~~~~~s-~fs~~~~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGS--FVPAES-AEL-PVFDRIFTRIGASDSLAQGLS-TFMVEMKETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCC--Ceeehh-eEe-cccceEEEEeCCCCchhcccc-HHHHHHHHHHHHHH
Confidence 46799999999999999998421 1111111 111100 000 001111111221111000011 22222334555555
Q ss_pred C--CceEEEEccCCC--ChhhHHH----HHhhcCCCCCCcEEEEeeCCccee
Q 045386 290 N--KKYFIVRDDVFN--DSDIWDD----LEEVLPDKQNGSRVLILVTDPILL 333 (706)
Q Consensus 290 ~--kr~LlVlDdvw~--~~~~~~~----l~~~l~~~~~gs~IivTTR~~~v~ 333 (706)
. ++-|+++|..-. |..+-.. +...+.. ..|+.+|++|....+.
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~ 125 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELT 125 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHH
Confidence 4 788999999866 3322222 2222222 2367899999877553
No 494
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.96 E-value=0.082 Score=46.51 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEcCCCchhhHHHHHHHcCCCc
Q 045386 211 IAILDSNGFDKTVFAADIYNNNHV 234 (706)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~~~~ 234 (706)
|.|+|..|+|||||.+.+......
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999986543
No 495
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.92 E-value=0.064 Score=49.20 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=19.7
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+|.|+|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 496
>PRK05439 pantothenate kinase; Provisional
Probab=92.92 E-value=0.11 Score=53.86 Aligned_cols=80 Identities=18% Similarity=0.102 Sum_probs=44.5
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccccC--CcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHH
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF--DCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKS 282 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~ 282 (706)
...-+|+|.|.+|+||||+|+.+.. ...... ..+.-++...=+...+.+.. ..+..... ..+. +.+.+.+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg---~Pes~D~~~l~~ 156 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKG---FPESYDMRALLR 156 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCC---CcccccHHHHHH
Confidence 4578999999999999999998876 333221 12333333222222222111 01111111 1133 7788888
Q ss_pred HHHHHhcCCc
Q 045386 283 ILRDYLTNKK 292 (706)
Q Consensus 283 ~l~~~L~~kr 292 (706)
.|.....|+.
T Consensus 157 ~L~~Lk~G~~ 166 (311)
T PRK05439 157 FLSDVKSGKP 166 (311)
T ss_pred HHHHHHcCCC
Confidence 8887777765
No 497
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.92 E-value=0.25 Score=54.18 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCC--cceEEEecCCC-CHHHHHHHHHHhcCCCCC-------CccccCC-C
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFD--CLAWVRVSIGY-YFGKILDDIINSLMPPSR-------ARVIIGE-D 276 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~i~~~il~~l~~~~~-------~~~~~~~-~ 276 (706)
=.-++|.|..|+|||||+.++.+.......+. .++++-+.+.. .+.++..+++..=..... +++.... -
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 35789999999999999999988554432222 45666666654 456666666543221110 0000000 1
Q ss_pred HHHHHHHHHHHhc---CCceEEEEccCCCChhhHHHHH
Q 045386 277 YHLKKSILRDYLT---NKKYFIVRDDVFNDSDIWDDLE 311 (706)
Q Consensus 277 ~~~~~~~l~~~L~---~kr~LlVlDdvw~~~~~~~~l~ 311 (706)
.......+.++++ ++++||++||+-.....+.++.
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIs 258 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREIS 258 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHH
Confidence 2223444566665 6899999999865233334443
No 498
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=92.89 E-value=1.1 Score=52.20 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+...
T Consensus 29 Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 29 NERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999875
No 499
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=92.88 E-value=0.74 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||++.+..-
T Consensus 24 Ge~~~liG~nGsGKSTLl~~l~Gl 47 (491)
T PRK10982 24 HSIHALMGENGAGKSTLLKCLFGI 47 (491)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
No 500
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.87 E-value=0.089 Score=51.31 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++..+|.|+|.+|+||||+|+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
Done!