Query 045386
Match_columns 706
No_of_seqs 436 out of 4552
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 22:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.1E-43 2.4E-47 394.7 17.7 274 187-486 130-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.5E-35 5E-40 339.4 12.7 254 187-478 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-34 7.3E-39 357.7 19.2 276 187-484 126-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 8.6E-31 3E-35 299.7 17.1 271 187-481 126-449 (591)
5 4fcg_A Uncharacterized protein 99.7 1.5E-17 5.1E-22 175.3 14.9 151 524-679 100-263 (328)
6 4fcg_A Uncharacterized protein 99.7 5.2E-17 1.8E-21 171.2 14.1 150 526-681 79-241 (328)
7 1ogq_A PGIP-2, polygalacturona 99.6 3E-16 1E-20 164.1 10.5 174 523-705 96-279 (313)
8 2z66_A Variable lymphocyte rec 99.6 1.5E-15 5E-20 158.3 12.8 178 524-705 74-259 (306)
9 1ogq_A PGIP-2, polygalacturona 99.6 1.6E-15 5.5E-20 158.6 12.5 175 522-705 119-302 (313)
10 1ozn_A Reticulon 4 receptor; N 99.6 2.2E-15 7.5E-20 155.3 13.1 196 497-705 31-236 (285)
11 3zyi_A Leucine-rich repeat-con 99.6 4.8E-15 1.6E-19 163.4 16.5 176 522-705 117-301 (452)
12 3zyj_A Leucine-rich repeat-con 99.6 6.5E-15 2.2E-19 161.7 16.3 176 522-705 106-290 (440)
13 2z66_A Variable lymphocyte rec 99.6 1.4E-15 4.7E-20 158.5 9.8 196 497-705 27-234 (306)
14 2o6q_A Variable lymphocyte rec 99.6 9.7E-15 3.3E-19 149.2 15.5 171 528-705 37-216 (270)
15 1h6u_A Internalin H; cell adhe 99.6 8.4E-15 2.9E-19 152.8 14.1 169 522-705 57-228 (308)
16 1h6t_A Internalin B; cell adhe 99.6 1.1E-14 3.8E-19 150.5 13.5 146 523-679 63-210 (291)
17 3zyj_A Leucine-rich repeat-con 99.6 9.2E-15 3.1E-19 160.5 13.4 175 522-705 82-266 (440)
18 3rfs_A Internalin B, repeat mo 99.6 1.6E-14 5.6E-19 147.7 14.4 154 522-680 57-216 (272)
19 1p9a_G Platelet glycoprotein I 99.6 1.4E-14 4.9E-19 149.6 14.0 170 528-705 31-206 (290)
20 1ozn_A Reticulon 4 receptor; N 99.6 1.9E-14 6.7E-19 148.2 14.5 172 527-705 31-212 (285)
21 1h6u_A Internalin H; cell adhe 99.6 1.5E-14 5E-19 150.9 13.6 167 524-705 37-206 (308)
22 2z80_A TOLL-like receptor 2, v 99.6 7.2E-15 2.5E-19 156.4 10.4 179 522-705 70-260 (353)
23 3zyi_A Leucine-rich repeat-con 99.6 1.7E-14 5.8E-19 159.0 13.6 175 522-705 93-277 (452)
24 1p9a_G Platelet glycoprotein I 99.5 2.4E-14 8.4E-19 147.8 13.8 172 524-705 6-183 (290)
25 2z62_A TOLL-like receptor 4, v 99.5 1.4E-14 4.8E-19 148.5 11.1 176 522-705 46-235 (276)
26 3rfs_A Internalin B, repeat mo 99.5 1.9E-14 6.4E-19 147.3 12.0 173 524-705 37-216 (272)
27 4ecn_A Leucine-rich repeat pro 99.5 1.1E-14 3.7E-19 171.2 11.2 130 543-679 481-629 (876)
28 3rgz_A Protein brassinosteroid 99.5 2.2E-14 7.4E-19 168.7 13.6 176 523-705 461-715 (768)
29 2z62_A TOLL-like receptor 4, v 99.5 1.8E-14 6.1E-19 147.7 11.2 172 528-705 28-211 (276)
30 2id5_A Lingo-1, leucine rich r 99.5 5.2E-14 1.8E-18 156.1 15.4 174 496-679 30-210 (477)
31 4eco_A Uncharacterized protein 99.5 6.7E-15 2.3E-19 169.2 8.0 173 526-705 247-444 (636)
32 3v47_A TOLL-like receptor 5B a 99.5 7.3E-14 2.5E-18 153.9 15.8 83 522-604 73-161 (455)
33 1m9s_A Internalin B; cell inva 99.5 2.6E-14 9.1E-19 162.2 12.5 148 522-680 59-208 (605)
34 1wwl_A Monocyte differentiatio 99.5 6.5E-15 2.2E-19 153.9 6.4 193 497-705 94-307 (312)
35 3m19_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 139.6 15.2 148 528-679 35-189 (251)
36 2ft3_A Biglycan; proteoglycan, 99.5 6.1E-14 2.1E-18 147.8 13.6 173 523-705 97-305 (332)
37 2o6q_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 141.4 15.1 169 528-705 16-192 (270)
38 3o6n_A APL1; leucine-rich repe 99.5 6.8E-14 2.3E-18 151.0 13.8 83 522-604 87-172 (390)
39 4eco_A Uncharacterized protein 99.5 6.6E-15 2.3E-19 169.2 5.9 175 522-705 200-413 (636)
40 3oja_B Anopheles plasmodium-re 99.5 5.2E-14 1.8E-18 160.7 13.2 150 523-680 94-289 (597)
41 3o6n_A APL1; leucine-rich repe 99.5 7.7E-14 2.6E-18 150.5 13.8 107 522-629 63-176 (390)
42 1xku_A Decorin; proteoglycan, 99.5 1.1E-13 3.8E-18 145.7 14.4 174 523-705 71-274 (330)
43 1xku_A Decorin; proteoglycan, 99.5 2.1E-13 7.1E-18 143.6 16.4 172 522-705 94-304 (330)
44 3rgz_A Protein brassinosteroid 99.5 1E-13 3.4E-18 163.1 15.4 178 522-705 436-691 (768)
45 1wwl_A Monocyte differentiatio 99.5 3.8E-14 1.3E-18 148.1 10.4 173 526-705 93-285 (312)
46 2id5_A Lingo-1, leucine rich r 99.5 1.2E-13 4.2E-18 153.1 15.2 150 528-681 32-188 (477)
47 2z80_A TOLL-like receptor 2, v 99.5 7.3E-14 2.5E-18 148.6 12.1 128 524-654 96-233 (353)
48 4fmz_A Internalin; leucine ric 99.5 1.5E-13 5.3E-18 145.6 14.5 168 524-705 84-254 (347)
49 4fmz_A Internalin; leucine ric 99.5 1.5E-13 5.3E-18 145.6 14.3 172 522-705 171-344 (347)
50 3vq2_A TLR4, TOLL-like recepto 99.5 5.2E-14 1.8E-18 161.0 11.2 176 523-705 371-556 (606)
51 2z81_A CD282 antigen, TOLL-lik 99.5 4.7E-14 1.6E-18 159.3 10.6 198 497-705 25-234 (549)
52 2ft3_A Biglycan; proteoglycan, 99.5 4.9E-13 1.7E-17 140.9 16.9 175 522-705 72-275 (332)
53 2xwt_C Thyrotropin receptor; s 99.5 6.7E-14 2.3E-18 140.2 9.7 193 496-705 29-237 (239)
54 1o6v_A Internalin A; bacterial 99.5 2.1E-13 7.1E-18 150.8 14.5 78 524-604 64-141 (466)
55 3oja_A Leucine-rich immune mol 99.5 4E-14 1.4E-18 157.3 8.6 168 522-705 52-225 (487)
56 2xwt_C Thyrotropin receptor; s 99.5 7.9E-14 2.7E-18 139.7 9.6 171 528-705 31-216 (239)
57 3oja_B Anopheles plasmodium-re 99.5 1.9E-13 6.6E-18 156.0 14.1 69 522-590 117-187 (597)
58 4ecn_A Leucine-rich repeat pro 99.5 6.5E-14 2.2E-18 164.6 10.2 150 525-681 488-656 (876)
59 3v47_A TOLL-like receptor 5B a 99.5 3.5E-13 1.2E-17 148.4 15.2 107 592-705 294-406 (455)
60 3t6q_A CD180 antigen; protein- 99.5 1.9E-13 6.6E-18 156.3 13.5 179 524-705 274-487 (606)
61 1h6t_A Internalin B; cell adhe 99.5 2.3E-13 7.9E-18 140.6 12.5 168 524-705 42-211 (291)
62 3vq2_A TLR4, TOLL-like recepto 99.5 7E-14 2.4E-18 159.9 9.5 178 522-705 344-532 (606)
63 1o6v_A Internalin A; bacterial 99.5 3.7E-13 1.3E-17 148.8 14.7 125 523-654 85-210 (466)
64 3o53_A Protein LRIM1, AGAP0063 99.4 6.1E-14 2.1E-18 146.9 7.4 167 523-705 53-225 (317)
65 2z81_A CD282 antigen, TOLL-lik 99.4 2.7E-13 9.4E-18 153.0 13.4 174 528-705 26-207 (549)
66 4ezg_A Putative uncharacterize 99.4 1.3E-13 4.3E-18 133.9 8.9 145 525-678 41-190 (197)
67 3bz5_A Internalin-J, INLJ; leu 99.4 5.1E-13 1.8E-17 147.0 14.8 162 524-705 81-244 (457)
68 3m19_A Variable lymphocyte rec 99.4 4.8E-13 1.6E-17 135.0 13.1 130 523-654 54-190 (251)
69 1xeu_A Internalin C; cellular 99.4 2.1E-13 7.3E-18 138.6 10.2 147 522-680 35-183 (263)
70 3bz5_A Internalin-J, INLJ; leu 99.4 4.8E-13 1.7E-17 147.2 13.5 163 522-705 58-223 (457)
71 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 8.4E-13 2.9E-17 149.6 15.9 99 497-604 51-153 (562)
72 4ezg_A Putative uncharacterize 99.4 3.2E-13 1.1E-17 131.0 9.9 149 547-705 40-192 (197)
73 4glp_A Monocyte differentiatio 99.4 2.3E-13 8E-18 141.9 9.5 171 525-705 114-305 (310)
74 2z7x_B TOLL-like receptor 1, v 99.4 1.3E-12 4.3E-17 146.6 15.7 62 523-586 64-127 (520)
75 3t6q_A CD180 antigen; protein- 99.4 5.6E-13 1.9E-17 152.4 13.1 156 522-680 246-411 (606)
76 3j0a_A TOLL-like receptor 5; m 99.4 1.6E-12 5.6E-17 154.3 17.5 109 496-604 22-155 (844)
77 3qfl_A MLA10; coiled-coil, (CC 99.4 1.1E-13 3.8E-18 120.6 5.5 83 31-124 2-84 (115)
78 2z7x_B TOLL-like receptor 1, v 99.4 8.4E-13 2.9E-17 148.0 13.9 99 498-605 21-123 (520)
79 1xeu_A Internalin C; cellular 99.4 1.7E-13 5.9E-18 139.3 7.5 164 526-705 17-183 (263)
80 2z63_A TOLL-like receptor 4, v 99.4 2.8E-13 9.5E-18 153.6 9.9 175 525-705 344-529 (570)
81 1m9s_A Internalin B; cell inva 99.4 8.5E-13 2.9E-17 149.8 13.4 168 524-705 39-208 (605)
82 2v9t_B SLIT homolog 2 protein 99.4 1.1E-12 3.8E-17 129.6 12.1 141 532-678 15-161 (220)
83 3j0a_A TOLL-like receptor 5; m 99.4 8.1E-13 2.8E-17 157.0 13.1 177 526-705 22-215 (844)
84 4g8a_A TOLL-like receptor 4; l 99.4 4.3E-13 1.5E-17 153.8 10.0 137 529-668 53-196 (635)
85 2z63_A TOLL-like receptor 4, v 99.4 1.9E-12 6.4E-17 146.8 14.9 82 523-604 71-156 (570)
86 3oja_A Leucine-rich immune mol 99.4 4.2E-13 1.4E-17 149.0 9.3 168 523-705 75-248 (487)
87 4glp_A Monocyte differentiatio 99.4 7.6E-13 2.6E-17 138.0 10.3 171 526-705 89-283 (310)
88 2v70_A SLIT-2, SLIT homolog 2 99.4 1.7E-12 5.8E-17 128.2 11.9 143 531-679 14-163 (220)
89 2ast_B S-phase kinase-associat 99.4 2.1E-13 7.3E-18 143.7 3.8 155 523-679 113-282 (336)
90 1ziw_A TOLL-like receptor 3; i 99.3 3.3E-12 1.1E-16 148.1 13.7 154 522-679 43-205 (680)
91 2o6s_A Variable lymphocyte rec 99.3 2.6E-12 8.9E-17 125.6 10.8 125 528-654 28-159 (208)
92 3o53_A Protein LRIM1, AGAP0063 99.3 1.1E-12 3.8E-17 137.3 8.7 169 522-705 74-248 (317)
93 2ast_B S-phase kinase-associat 99.3 2.5E-13 8.5E-18 143.2 2.9 179 524-704 89-282 (336)
94 3e6j_A Variable lymphocyte rec 99.3 8.2E-12 2.8E-16 124.1 12.0 125 528-654 40-170 (229)
95 2xot_A Amphoterin-induced prot 99.3 4.2E-12 1.4E-16 135.4 10.1 143 531-680 21-174 (361)
96 1ziw_A TOLL-like receptor 3; i 99.3 7.6E-12 2.6E-16 145.1 13.1 175 524-705 426-620 (680)
97 3e6j_A Variable lymphocyte rec 99.3 8.6E-12 2.9E-16 123.9 11.5 144 530-680 21-170 (229)
98 2ca6_A RAN GTPase-activating p 99.3 8.6E-13 2.9E-17 142.1 4.1 179 524-705 90-314 (386)
99 2ell_A Acidic leucine-rich nuc 99.3 4.5E-12 1.5E-16 119.4 8.6 130 526-680 22-158 (168)
100 2v9t_B SLIT homolog 2 protein 99.3 1.5E-11 5E-16 121.4 11.1 125 528-654 32-163 (220)
101 3g06_A SSPH2 (leucine-rich rep 99.3 1.9E-11 6.5E-16 138.9 13.5 60 526-591 99-158 (622)
102 3cvr_A Invasion plasmid antige 99.3 1.4E-11 4.8E-16 138.4 11.8 151 528-705 80-241 (571)
103 2ca6_A RAN GTPase-activating p 99.3 8.1E-13 2.8E-17 142.3 1.6 154 524-680 56-255 (386)
104 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.2E-11 4.1E-16 140.1 11.0 167 528-705 331-508 (562)
105 1jl5_A Outer protein YOPM; leu 99.3 2.4E-11 8.3E-16 133.5 13.1 115 528-654 131-248 (454)
106 2je0_A Acidic leucine-rich nuc 99.2 5.4E-12 1.8E-16 116.2 6.3 102 525-628 14-123 (149)
107 2o6s_A Variable lymphocyte rec 99.2 1.1E-11 3.9E-16 121.0 8.9 141 532-678 11-157 (208)
108 3g06_A SSPH2 (leucine-rich rep 99.2 2.4E-11 8.1E-16 138.1 12.5 89 497-604 60-148 (622)
109 2v70_A SLIT-2, SLIT homolog 2 99.2 2.6E-11 9E-16 119.6 11.3 125 528-654 32-164 (220)
110 4b8c_D Glucose-repressible alc 99.2 1.8E-12 6.3E-17 150.7 2.4 148 522-679 218-369 (727)
111 4b8c_D Glucose-repressible alc 99.2 1E-11 3.6E-16 144.3 8.7 85 523-607 242-326 (727)
112 3cvr_A Invasion plasmid antige 99.2 3.9E-11 1.3E-15 134.7 12.6 136 525-681 97-242 (571)
113 2xot_A Amphoterin-induced prot 99.2 2.4E-11 8.2E-16 129.5 9.1 149 528-680 39-200 (361)
114 1w5s_A Origin recognition comp 99.2 9.4E-11 3.2E-15 127.1 13.7 138 187-330 24-189 (412)
115 1jl5_A Outer protein YOPM; leu 99.2 9.3E-11 3.2E-15 128.8 13.6 137 527-681 110-249 (454)
116 1a9n_A U2A', U2A'; complex (nu 99.2 2E-11 6.8E-16 115.9 7.2 128 522-654 13-151 (176)
117 2wfh_A SLIT homolog 2 protein 99.2 1E-10 3.4E-15 112.9 11.1 121 530-654 12-137 (193)
118 1w8a_A SLIT protein; signaling 99.2 6.9E-11 2.4E-15 113.9 9.3 121 530-654 10-137 (192)
119 1dce_A Protein (RAB geranylger 99.1 9.8E-11 3.4E-15 132.0 10.6 98 529-629 442-544 (567)
120 2ell_A Acidic leucine-rich nuc 99.1 8.1E-11 2.8E-15 110.7 8.0 128 549-705 22-158 (168)
121 1ds9_A Outer arm dynein; leuci 99.1 8.6E-13 2.9E-17 128.0 -5.9 141 530-675 25-180 (198)
122 1dce_A Protein (RAB geranylger 99.1 7.7E-12 2.6E-16 141.0 0.5 100 553-679 443-543 (567)
123 4g8a_A TOLL-like receptor 4; l 99.1 2E-10 6.8E-15 131.6 11.2 173 526-705 395-578 (635)
124 4ay9_X Follicle-stimulating ho 99.1 1.6E-10 5.4E-15 122.6 9.3 175 522-705 48-234 (350)
125 2je0_A Acidic leucine-rich nuc 99.1 2E-10 6.8E-15 105.6 7.3 120 497-626 16-148 (149)
126 3goz_A Leucine-rich repeat-con 99.0 9.8E-11 3.4E-15 124.8 4.4 177 528-705 80-295 (362)
127 3goz_A Leucine-rich repeat-con 99.0 1.5E-10 5.1E-15 123.4 5.6 181 523-705 45-264 (362)
128 1w8a_A SLIT protein; signaling 99.0 4.9E-10 1.7E-14 107.9 8.5 123 553-681 10-138 (192)
129 1a9n_A U2A', U2A'; complex (nu 99.0 4.9E-10 1.7E-14 106.2 7.7 105 524-630 37-152 (176)
130 2wfh_A SLIT homolog 2 protein 99.0 9.7E-10 3.3E-14 105.9 9.7 102 528-630 31-138 (193)
131 2o6r_A Variable lymphocyte rec 99.0 2.6E-09 9E-14 101.2 11.9 122 529-654 8-135 (177)
132 4ay9_X Follicle-stimulating ho 99.0 2E-09 6.8E-14 114.1 11.9 200 497-704 29-256 (350)
133 1ds9_A Outer arm dynein; leuci 99.0 9.3E-12 3.2E-16 120.7 -5.7 123 523-649 43-180 (198)
134 1z7x_W Ribonuclease inhibitor; 98.9 1.7E-10 5.8E-15 127.0 2.2 178 524-705 52-267 (461)
135 1z7x_W Ribonuclease inhibitor; 98.9 2.5E-10 8.4E-15 125.7 1.2 153 524-680 223-409 (461)
136 3ogk_B Coronatine-insensitive 98.9 2.9E-10 9.9E-15 129.4 1.5 150 525-677 189-350 (592)
137 2r9u_A Variable lymphocyte rec 98.9 5.9E-09 2E-13 98.6 9.2 72 531-604 15-88 (174)
138 3g39_A Variable lymphocyte rec 98.8 6.7E-09 2.3E-13 97.7 9.1 96 529-627 10-111 (170)
139 2r9u_A Variable lymphocyte rec 98.8 9.7E-09 3.3E-13 97.0 8.6 80 528-607 33-115 (174)
140 2o6r_A Variable lymphocyte rec 98.8 1.8E-08 6.3E-13 95.3 10.3 123 552-680 8-135 (177)
141 3g39_A Variable lymphocyte rec 98.7 2.3E-08 7.8E-13 94.1 8.6 81 527-607 29-112 (170)
142 2qby_B CDC6 homolog 3, cell di 98.7 2.9E-08 1E-12 106.3 9.7 137 187-330 22-174 (384)
143 1fnn_A CDC6P, cell division co 98.7 1.2E-07 4.3E-12 101.4 14.1 138 187-330 19-169 (389)
144 2qen_A Walker-type ATPase; unk 98.7 3.8E-08 1.3E-12 103.7 9.2 253 187-478 14-349 (350)
145 3ogk_B Coronatine-insensitive 98.6 1.8E-08 6E-13 114.5 5.2 178 524-704 216-446 (592)
146 2p1m_B Transport inhibitor res 98.6 3.6E-09 1.2E-13 120.3 -0.9 174 526-703 128-347 (594)
147 2v1u_A Cell division control p 98.6 7.9E-08 2.7E-12 102.9 9.5 137 187-330 21-177 (387)
148 2qby_A CDC6 homolog 1, cell di 98.6 6.2E-08 2.1E-12 103.5 8.5 139 187-331 22-174 (386)
149 2chg_A Replication factor C sm 98.6 1.5E-07 5.2E-12 91.9 10.4 118 184-330 16-142 (226)
150 1njg_A DNA polymerase III subu 98.6 2.4E-07 8.3E-12 91.8 11.5 138 184-330 22-166 (250)
151 3sb4_A Hypothetical leucine ri 98.6 7.6E-08 2.6E-12 100.8 7.6 96 596-700 225-327 (329)
152 2ifg_A High affinity nerve gro 98.5 1.2E-07 4.2E-12 99.9 8.8 81 524-604 27-110 (347)
153 2fna_A Conserved hypothetical 98.5 1.4E-07 4.8E-12 99.6 9.1 252 187-477 15-356 (357)
154 2p1m_B Transport inhibitor res 98.5 1.5E-08 5.3E-13 115.0 -0.4 149 526-677 154-346 (594)
155 2ifg_A High affinity nerve gro 98.5 2.8E-07 9.5E-12 97.2 8.9 98 531-630 11-115 (347)
156 3sb4_A Hypothetical leucine ri 98.4 5.2E-07 1.8E-11 94.4 9.1 99 573-676 225-328 (329)
157 1sxj_B Activator 1 37 kDa subu 98.3 8.3E-07 2.8E-11 92.3 8.4 121 183-330 19-147 (323)
158 4fdw_A Leucine rich hypothetic 98.3 3E-06 1E-10 91.0 12.0 175 522-704 174-380 (401)
159 3un9_A NLR family member X1; l 98.3 4.9E-08 1.7E-12 103.9 -2.3 42 639-680 207-250 (372)
160 2ra8_A Uncharacterized protein 98.2 3.6E-06 1.2E-10 88.9 9.0 63 641-705 250-318 (362)
161 4fdw_A Leucine rich hypothetic 98.1 1.1E-05 3.6E-10 86.7 12.5 126 522-653 152-281 (401)
162 1iqp_A RFCS; clamp loader, ext 98.1 2.5E-06 8.6E-11 88.8 7.4 122 182-330 22-150 (327)
163 3un9_A NLR family member X1; l 98.0 9.2E-07 3.1E-11 94.1 0.8 127 527-654 100-250 (372)
164 3te6_A Regulatory protein SIR3 98.0 2.7E-05 9.2E-10 80.1 11.7 111 187-302 22-143 (318)
165 1jbk_A CLPB protein; beta barr 97.9 1.3E-05 4.6E-10 75.8 6.8 42 187-230 24-65 (195)
166 2ra8_A Uncharacterized protein 97.8 7E-06 2.4E-10 86.7 3.2 152 524-680 135-318 (362)
167 2chq_A Replication factor C sm 97.8 2.2E-05 7.5E-10 81.3 6.5 122 183-330 15-142 (319)
168 3rw6_A Nuclear RNA export fact 97.7 1.9E-05 6.6E-10 79.2 5.0 79 525-604 167-258 (267)
169 1jr3_A DNA polymerase III subu 97.7 0.00013 4.4E-09 77.3 11.1 139 184-330 15-159 (373)
170 2p65_A Hypothetical protein PF 97.7 6.2E-05 2.1E-09 70.9 7.1 43 186-230 23-65 (187)
171 2w58_A DNAI, primosome compone 97.7 4.9E-05 1.7E-09 73.0 6.4 88 193-302 37-126 (202)
172 3n70_A Transport activator; si 97.6 0.00016 5.4E-09 65.5 9.0 112 187-330 3-116 (145)
173 3ec2_A DNA replication protein 97.6 5.6E-05 1.9E-09 71.2 6.1 115 193-330 22-143 (180)
174 1io0_A Tropomodulin; LRR prote 97.6 3.6E-05 1.2E-09 73.0 4.8 83 522-604 30-128 (185)
175 3h4m_A Proteasome-activating n 97.6 9E-05 3.1E-09 75.4 6.8 48 183-230 15-73 (285)
176 3u61_B DNA polymerase accessor 97.5 0.00018 6E-09 74.8 8.7 118 181-330 22-146 (324)
177 3rw6_A Nuclear RNA export fact 97.5 3E-05 1E-09 77.7 2.2 102 524-627 137-260 (267)
178 3syl_A Protein CBBX; photosynt 97.5 0.00013 4.4E-09 75.2 6.7 121 187-329 33-178 (309)
179 3co5_A Putative two-component 97.4 9E-05 3.1E-09 67.0 4.6 45 187-231 6-50 (143)
180 2z4s_A Chromosomal replication 97.4 0.00032 1.1E-08 76.1 9.7 104 208-330 130-237 (440)
181 1sxj_D Activator 1 41 kDa subu 97.4 0.0003 1E-08 73.8 9.0 135 183-330 35-173 (353)
182 1sxj_E Activator 1 40 kDa subu 97.4 0.00054 1.9E-08 71.9 10.8 46 183-230 12-58 (354)
183 3bos_A Putative DNA replicatio 97.3 6.8E-05 2.3E-09 73.9 2.7 60 184-247 27-89 (242)
184 3eie_A Vacuolar protein sortin 97.3 0.00084 2.9E-08 69.6 10.4 48 183-230 16-73 (322)
185 1hqc_A RUVB; extended AAA-ATPa 97.2 0.00031 1.1E-08 72.8 6.5 47 184-230 11-60 (324)
186 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0011 3.8E-08 66.1 10.3 46 185-230 6-61 (262)
187 1l8q_A Chromosomal replication 97.2 0.0006 2.1E-08 70.7 8.0 115 194-330 23-141 (324)
188 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.0047 1.6E-07 63.8 14.0 48 183-230 10-67 (322)
189 3cf0_A Transitional endoplasmi 97.1 0.0022 7.5E-08 65.7 11.4 95 184-302 14-119 (301)
190 3uk6_A RUVB-like 2; hexameric 97.1 0.0026 8.8E-08 67.1 12.2 47 184-230 43-92 (368)
191 3d8b_A Fidgetin-like protein 1 97.1 0.0014 4.9E-08 68.9 9.6 47 184-230 83-139 (357)
192 1sxj_C Activator 1 40 kDa subu 97.1 0.0013 4.5E-08 68.6 9.2 119 183-329 23-149 (340)
193 3pvs_A Replication-associated 97.1 0.0012 4.1E-08 71.5 8.9 46 183-230 24-72 (447)
194 1io0_A Tropomodulin; LRR prote 97.0 0.00034 1.1E-08 66.2 3.5 85 522-606 59-160 (185)
195 3pfi_A Holliday junction ATP-d 97.0 0.0022 7.7E-08 66.7 10.2 48 183-230 27-77 (338)
196 1sxj_A Activator 1 95 kDa subu 97.0 0.0015 5.2E-08 72.3 9.1 49 182-230 36-99 (516)
197 2zan_A Vacuolar protein sortin 97.0 0.0036 1.2E-07 67.8 11.9 48 183-230 132-189 (444)
198 3vfd_A Spastin; ATPase, microt 97.0 0.0036 1.2E-07 66.6 11.7 48 183-230 113-170 (389)
199 1d2n_A N-ethylmaleimide-sensit 96.9 0.0016 5.3E-08 65.7 8.2 44 187-230 35-86 (272)
200 2qp9_X Vacuolar protein sortin 96.9 0.0028 9.5E-08 66.6 10.0 48 183-230 49-106 (355)
201 3e4g_A ATP synthase subunit S, 96.9 0.00064 2.2E-08 63.2 4.3 78 528-605 61-147 (176)
202 1a5t_A Delta prime, HOLB; zinc 96.8 0.0093 3.2E-07 62.0 13.0 111 192-330 9-148 (334)
203 2kjq_A DNAA-related protein; s 96.8 0.00072 2.5E-08 61.4 3.7 23 208-230 36-58 (149)
204 2bjv_A PSP operon transcriptio 96.8 0.0032 1.1E-07 63.1 8.8 45 187-231 8-52 (265)
205 2cvh_A DNA repair and recombin 96.7 0.0037 1.3E-07 60.4 8.0 90 207-302 19-116 (220)
206 2gno_A DNA polymerase III, gam 96.6 0.0092 3.1E-07 61.0 11.1 119 189-330 1-122 (305)
207 3b9p_A CG5977-PA, isoform A; A 96.6 0.0039 1.3E-07 63.5 8.2 48 183-230 19-76 (297)
208 4fcw_A Chaperone protein CLPB; 96.6 0.0012 4.2E-08 67.7 4.5 118 187-315 19-144 (311)
209 1lv7_A FTSH; alpha/beta domain 96.6 0.0047 1.6E-07 61.5 8.6 48 183-230 10-67 (257)
210 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0017 5.7E-08 66.3 5.1 69 208-302 123-193 (331)
211 3pxg_A Negative regulator of g 96.6 0.0032 1.1E-07 68.7 7.6 42 187-230 182-223 (468)
212 3hu3_A Transitional endoplasmi 96.4 0.0056 1.9E-07 67.0 8.4 92 185-300 204-306 (489)
213 2ce7_A Cell division protein F 96.4 0.012 4.1E-07 63.9 10.4 95 183-302 14-119 (476)
214 1ojl_A Transcriptional regulat 96.3 0.004 1.4E-07 63.8 5.9 45 187-231 4-48 (304)
215 3e4g_A ATP synthase subunit S, 96.3 0.0028 9.7E-08 58.8 4.2 45 543-587 53-99 (176)
216 2qgz_A Helicase loader, putati 96.2 0.0018 6.3E-08 66.5 2.7 52 193-246 136-189 (308)
217 2r62_A Cell division protease 96.2 0.0016 5.4E-08 65.4 2.1 47 184-230 10-66 (268)
218 3lw7_A Adenylate kinase relate 96.0 0.016 5.5E-07 53.4 8.2 20 209-228 2-21 (179)
219 1qvr_A CLPB protein; coiled co 96.0 0.0075 2.6E-07 71.1 7.2 42 187-230 172-213 (854)
220 3hr8_A Protein RECA; alpha and 96.0 0.012 4.1E-07 61.3 7.9 89 207-302 60-150 (356)
221 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.017 5.9E-07 56.0 8.4 118 208-330 23-168 (235)
222 1sgw_A Putative ABC transporte 95.9 0.02 6.7E-07 55.3 8.3 121 208-332 35-195 (214)
223 3t15_A Ribulose bisphosphate c 95.9 0.01 3.4E-07 60.5 6.5 29 207-237 35-63 (293)
224 1r6b_X CLPA protein; AAA+, N-t 95.8 0.035 1.2E-06 64.5 11.8 42 187-230 188-229 (758)
225 3pxi_A Negative regulator of g 95.8 0.012 4.1E-07 68.4 7.6 42 187-230 182-223 (758)
226 3rfe_A Platelet glycoprotein I 95.8 0.013 4.4E-07 51.6 6.0 54 531-586 11-67 (130)
227 2b8t_A Thymidine kinase; deoxy 95.8 0.0061 2.1E-07 59.1 4.2 113 208-331 12-127 (223)
228 4b4t_L 26S protease subunit RP 95.8 0.025 8.4E-07 60.5 9.2 52 184-237 180-242 (437)
229 2cbz_A Multidrug resistance-as 95.7 0.045 1.5E-06 53.6 10.4 56 277-333 132-192 (237)
230 4b4t_K 26S protease regulatory 95.7 0.024 8.3E-07 60.5 9.0 54 183-238 170-234 (428)
231 4b4t_M 26S protease regulatory 95.7 0.017 5.8E-07 61.7 7.7 55 182-238 178-243 (434)
232 2pjz_A Hypothetical protein ST 95.7 0.037 1.3E-06 55.2 9.8 120 209-332 31-187 (263)
233 4b4t_J 26S protease regulatory 95.6 0.022 7.6E-07 60.0 8.1 53 184-238 147-210 (405)
234 2zr9_A Protein RECA, recombina 95.6 0.022 7.4E-07 59.4 7.7 89 207-302 60-150 (349)
235 2pze_A Cystic fibrosis transme 95.6 0.13 4.4E-06 50.1 12.8 50 283-332 140-192 (229)
236 4g1u_C Hemin import ATP-bindin 95.5 0.061 2.1E-06 53.7 10.5 124 208-333 37-211 (266)
237 3c8u_A Fructokinase; YP_612366 95.5 0.0087 3E-07 57.5 4.1 38 193-230 7-44 (208)
238 1n0w_A DNA repair protein RAD5 95.5 0.029 1E-06 54.9 7.9 94 208-302 24-130 (243)
239 1xp8_A RECA protein, recombina 95.4 0.028 9.6E-07 58.9 7.9 88 208-302 74-163 (366)
240 1u94_A RECA protein, recombina 95.4 0.022 7.5E-07 59.5 7.0 89 207-302 62-152 (356)
241 1vpl_A ABC transporter, ATP-bi 95.4 0.054 1.8E-06 53.7 9.6 24 208-231 41-64 (256)
242 4b4t_H 26S protease regulatory 95.4 0.032 1.1E-06 59.6 8.2 52 185-238 209-271 (467)
243 3gfo_A Cobalt import ATP-bindi 95.4 0.045 1.5E-06 54.9 9.0 124 208-333 34-207 (275)
244 1ypw_A Transitional endoplasmi 95.3 0.016 5.5E-07 67.5 6.4 44 187-230 206-260 (806)
245 3pxi_A Negative regulator of g 95.3 0.022 7.5E-07 66.2 7.5 44 187-230 493-543 (758)
246 2qi9_C Vitamin B12 import ATP- 95.2 0.046 1.6E-06 53.9 8.4 123 208-332 26-195 (249)
247 1rz3_A Hypothetical protein rb 95.2 0.016 5.3E-07 55.3 4.8 41 190-230 3-44 (201)
248 2nq2_C Hypothetical ABC transp 95.2 0.05 1.7E-06 53.9 8.7 122 208-332 31-191 (253)
249 3cf2_A TER ATPase, transitiona 95.1 0.055 1.9E-06 62.3 9.7 94 185-302 204-308 (806)
250 2z43_A DNA repair and recombin 95.1 0.035 1.2E-06 57.3 7.4 94 208-302 107-214 (324)
251 2yz2_A Putative ABC transporte 95.0 0.063 2.2E-06 53.6 8.8 122 208-332 33-200 (266)
252 1qvr_A CLPB protein; coiled co 94.9 0.033 1.1E-06 65.6 7.4 44 187-230 560-610 (854)
253 4b4t_I 26S protease regulatory 94.9 0.061 2.1E-06 56.9 8.5 55 182-238 179-244 (437)
254 4gt6_A Cell surface protein; l 94.8 0.059 2E-06 57.2 8.6 122 547-678 261-387 (394)
255 1v5w_A DMC1, meiotic recombina 94.8 0.08 2.7E-06 55.0 9.3 96 206-302 120-230 (343)
256 1iy2_A ATP-dependent metallopr 94.8 0.046 1.6E-06 54.9 7.1 48 184-231 39-96 (278)
257 2dhr_A FTSH; AAA+ protein, hex 94.8 0.038 1.3E-06 60.3 6.8 49 183-231 29-87 (499)
258 4fs7_A Uncharacterized protein 94.6 0.094 3.2E-06 55.5 9.6 14 664-677 361-374 (394)
259 1odf_A YGR205W, hypothetical 3 94.6 0.029 9.8E-07 56.8 5.2 26 205-230 28-53 (290)
260 2i1q_A DNA repair and recombin 94.6 0.045 1.5E-06 56.3 6.7 95 207-302 97-215 (322)
261 3io5_A Recombination and repai 94.4 0.062 2.1E-06 54.5 7.0 86 210-302 30-122 (333)
262 1g5t_A COB(I)alamin adenosyltr 94.4 0.039 1.3E-06 52.0 5.1 52 280-331 108-164 (196)
263 1zp6_A Hypothetical protein AT 94.4 0.02 6.7E-07 53.9 3.2 24 208-231 9-32 (191)
264 3tui_C Methionine import ATP-b 94.3 0.12 4.2E-06 53.7 9.3 124 208-333 54-227 (366)
265 3kb2_A SPBC2 prophage-derived 94.3 0.019 6.6E-07 52.8 2.8 22 209-230 2-23 (173)
266 2bbs_A Cystic fibrosis transme 94.3 0.3 1E-05 49.2 11.8 50 283-332 169-221 (290)
267 3jvv_A Twitching mobility prot 94.3 0.048 1.6E-06 56.9 6.0 110 208-333 123-234 (356)
268 1qhx_A CPT, protein (chloramph 94.2 0.019 6.5E-07 53.3 2.6 22 209-230 4-25 (178)
269 1in4_A RUVB, holliday junction 94.2 0.021 7.3E-07 59.2 3.3 44 187-230 27-73 (334)
270 3m6a_A ATP-dependent protease 94.2 0.054 1.9E-06 60.1 6.6 44 187-230 83-130 (543)
271 1kgd_A CASK, peripheral plasma 94.1 0.022 7.4E-07 53.2 2.8 23 208-230 5-27 (180)
272 3vaa_A Shikimate kinase, SK; s 94.1 0.023 7.8E-07 54.0 2.9 23 208-230 25-47 (199)
273 3d31_A Sulfate/molybdate ABC t 94.1 0.17 5.7E-06 52.5 9.7 123 208-332 26-190 (348)
274 1j8m_F SRP54, signal recogniti 94.1 0.15 5E-06 51.8 9.0 23 208-230 98-120 (297)
275 2px0_A Flagellar biosynthesis 94.0 0.087 3E-06 53.4 7.1 24 207-230 104-127 (296)
276 1z47_A CYSA, putative ABC-tran 94.0 0.1 3.5E-06 54.2 7.8 124 208-333 41-209 (355)
277 1ly1_A Polynucleotide kinase; 94.0 0.028 9.5E-07 52.1 3.1 22 209-230 3-24 (181)
278 4fs7_A Uncharacterized protein 93.9 0.22 7.4E-06 52.7 10.5 142 522-674 247-393 (394)
279 1r6b_X CLPA protein; AAA+, N-t 93.9 0.061 2.1E-06 62.5 6.7 44 187-230 460-510 (758)
280 1kag_A SKI, shikimate kinase I 93.9 0.021 7.2E-07 52.7 2.2 22 209-230 5-26 (173)
281 1ofh_A ATP-dependent HSL prote 93.8 0.023 8E-07 57.9 2.5 44 187-230 17-72 (310)
282 3uie_A Adenylyl-sulfate kinase 93.8 0.034 1.2E-06 52.8 3.4 23 208-230 25-47 (200)
283 3tr0_A Guanylate kinase, GMP k 93.7 0.029 9.8E-07 53.4 2.9 23 208-230 7-29 (205)
284 1pzn_A RAD51, DNA repair and r 93.7 0.11 3.7E-06 54.1 7.5 95 207-302 130-242 (349)
285 4gp7_A Metallophosphoesterase; 93.7 0.029 9.9E-07 51.9 2.8 23 208-230 9-31 (171)
286 3hws_A ATP-dependent CLP prote 93.7 0.038 1.3E-06 58.0 3.9 44 187-230 17-73 (363)
287 1knq_A Gluconate kinase; ALFA/ 93.7 0.034 1.2E-06 51.4 3.1 23 208-230 8-30 (175)
288 3nbx_X ATPase RAVA; AAA+ ATPas 93.6 0.082 2.8E-06 57.7 6.5 40 187-230 24-63 (500)
289 2bdt_A BH3686; alpha-beta prot 93.6 0.036 1.2E-06 52.0 3.3 22 209-230 3-24 (189)
290 3rfe_A Platelet glycoprotein I 93.6 0.096 3.3E-06 45.9 5.7 51 554-606 11-64 (130)
291 2it1_A 362AA long hypothetical 93.5 0.24 8.1E-06 51.6 9.6 124 208-333 29-197 (362)
292 3asz_A Uridine kinase; cytidin 93.5 0.038 1.3E-06 52.9 3.3 24 207-230 5-28 (211)
293 3trf_A Shikimate kinase, SK; a 93.5 0.033 1.1E-06 52.0 2.8 23 208-230 5-27 (185)
294 3a00_A Guanylate kinase, GMP k 93.5 0.029 9.8E-07 52.7 2.4 22 209-230 2-23 (186)
295 2xxa_A Signal recognition part 93.5 0.19 6.7E-06 53.7 9.0 24 207-230 99-122 (433)
296 4eun_A Thermoresistant glucoki 93.5 0.034 1.2E-06 52.8 2.9 23 208-230 29-51 (200)
297 1ye8_A Protein THEP1, hypothet 93.4 0.036 1.2E-06 51.7 2.9 22 210-231 2-23 (178)
298 2qt1_A Nicotinamide riboside k 93.4 0.043 1.5E-06 52.3 3.5 24 207-230 20-43 (207)
299 4gt6_A Cell surface protein; l 93.4 0.7 2.4E-05 48.7 13.4 103 570-679 261-367 (394)
300 3ozx_A RNAse L inhibitor; ATP 93.4 0.2 6.9E-06 55.2 9.3 25 207-231 24-48 (538)
301 2ga8_A Hypothetical 39.9 kDa p 93.4 0.06 2E-06 55.6 4.6 43 188-230 2-46 (359)
302 1nks_A Adenylate kinase; therm 93.4 0.038 1.3E-06 51.8 3.0 22 209-230 2-23 (194)
303 3t61_A Gluconokinase; PSI-biol 93.4 0.028 9.7E-07 53.4 2.1 23 208-230 18-40 (202)
304 2if2_A Dephospho-COA kinase; a 93.3 0.036 1.2E-06 52.7 2.7 22 209-230 2-23 (204)
305 2rhm_A Putative kinase; P-loop 93.3 0.044 1.5E-06 51.4 3.3 23 208-230 5-27 (193)
306 2j41_A Guanylate kinase; GMP, 93.2 0.038 1.3E-06 52.5 2.8 23 208-230 6-28 (207)
307 1sky_E F1-ATPase, F1-ATP synth 93.2 0.071 2.4E-06 57.2 5.0 61 197-260 141-203 (473)
308 1jjv_A Dephospho-COA kinase; P 93.2 0.046 1.6E-06 52.1 3.3 22 209-230 3-24 (206)
309 3lda_A DNA repair protein RAD5 93.2 0.18 6.1E-06 53.4 8.1 94 208-302 178-284 (400)
310 2x8a_A Nuclear valosin-contain 93.1 0.054 1.8E-06 54.4 3.8 46 184-230 9-66 (274)
311 2jaq_A Deoxyguanosine kinase; 93.1 0.04 1.4E-06 52.2 2.7 21 210-230 2-22 (205)
312 1uj2_A Uridine-cytidine kinase 93.1 0.046 1.6E-06 54.0 3.3 24 207-230 21-44 (252)
313 1uf9_A TT1252 protein; P-loop, 93.1 0.049 1.7E-06 51.6 3.3 25 206-230 6-30 (203)
314 2c9o_A RUVB-like 1; hexameric 93.1 0.07 2.4E-06 57.9 4.9 45 186-230 38-85 (456)
315 1ex7_A Guanylate kinase; subst 93.1 0.04 1.4E-06 51.7 2.6 22 209-230 2-23 (186)
316 1kht_A Adenylate kinase; phosp 93.1 0.041 1.4E-06 51.5 2.7 22 209-230 4-25 (192)
317 1zuh_A Shikimate kinase; alpha 93.1 0.043 1.5E-06 50.3 2.8 24 207-230 6-29 (168)
318 1ixz_A ATP-dependent metallopr 93.1 0.062 2.1E-06 53.1 4.1 48 184-231 15-72 (254)
319 3bk7_A ABC transporter ATP-bin 93.0 0.38 1.3E-05 53.8 10.9 124 208-333 382-535 (607)
320 1fx0_B ATP synthase beta chain 93.0 0.16 5.4E-06 54.6 7.4 104 197-302 155-277 (498)
321 1lvg_A Guanylate kinase, GMP k 93.0 0.037 1.3E-06 52.6 2.3 23 208-230 4-26 (198)
322 3tau_A Guanylate kinase, GMP k 93.0 0.047 1.6E-06 52.3 3.1 24 208-231 8-31 (208)
323 3e70_C DPA, signal recognition 93.0 0.071 2.4E-06 54.9 4.6 24 207-230 128-151 (328)
324 1cke_A CK, MSSA, protein (cyti 93.0 0.045 1.5E-06 53.0 2.9 22 209-230 6-27 (227)
325 1znw_A Guanylate kinase, GMP k 93.0 0.046 1.6E-06 52.2 2.9 23 208-230 20-42 (207)
326 3ice_A Transcription terminati 93.0 0.065 2.2E-06 55.8 4.1 51 196-250 163-216 (422)
327 1ukz_A Uridylate kinase; trans 92.9 0.056 1.9E-06 51.3 3.4 24 207-230 14-37 (203)
328 3aez_A Pantothenate kinase; tr 92.9 0.056 1.9E-06 55.3 3.5 24 207-230 89-112 (312)
329 1htw_A HI0065; nucleotide-bind 92.9 0.058 2E-06 49.2 3.3 23 208-230 33-55 (158)
330 2bbw_A Adenylate kinase 4, AK4 92.9 0.05 1.7E-06 53.6 3.1 23 208-230 27-49 (246)
331 2ffh_A Protein (FFH); SRP54, s 92.8 0.26 8.9E-06 52.4 8.8 23 208-230 98-120 (425)
332 1tev_A UMP-CMP kinase; ploop, 92.8 0.054 1.8E-06 50.8 3.2 23 208-230 3-25 (196)
333 1y63_A LMAJ004144AAA protein; 92.8 0.054 1.8E-06 50.7 3.1 24 207-230 9-32 (184)
334 3iij_A Coilin-interacting nucl 92.8 0.042 1.4E-06 51.1 2.4 23 208-230 11-33 (180)
335 2qor_A Guanylate kinase; phosp 92.8 0.039 1.3E-06 52.6 2.2 24 207-230 11-34 (204)
336 2ze6_A Isopentenyl transferase 92.8 0.052 1.8E-06 53.8 3.1 22 209-230 2-23 (253)
337 3tqc_A Pantothenate kinase; bi 92.8 0.079 2.7E-06 54.3 4.5 25 206-230 90-114 (321)
338 1gvn_B Zeta; postsegregational 92.7 0.096 3.3E-06 52.9 5.0 24 207-230 32-55 (287)
339 1xjc_A MOBB protein homolog; s 92.7 0.054 1.8E-06 49.9 2.8 24 207-230 3-26 (169)
340 1via_A Shikimate kinase; struc 92.7 0.042 1.4E-06 50.8 2.2 22 209-230 5-26 (175)
341 2c95_A Adenylate kinase 1; tra 92.7 0.054 1.9E-06 50.9 3.0 23 208-230 9-31 (196)
342 2yvu_A Probable adenylyl-sulfa 92.7 0.058 2E-06 50.4 3.1 24 207-230 12-35 (186)
343 2p5t_B PEZT; postsegregational 92.6 0.079 2.7E-06 52.4 4.2 37 194-230 15-54 (253)
344 1yqt_A RNAse L inhibitor; ATP- 92.6 0.23 8E-06 54.8 8.3 124 208-333 312-465 (538)
345 3cm0_A Adenylate kinase; ATP-b 92.6 0.06 2E-06 50.2 3.1 23 208-230 4-26 (186)
346 2hf9_A Probable hydrogenase ni 92.6 0.085 2.9E-06 50.9 4.3 25 207-231 37-61 (226)
347 2jeo_A Uridine-cytidine kinase 92.6 0.067 2.3E-06 52.6 3.6 24 207-230 24-47 (245)
348 3j16_B RLI1P; ribosome recycli 92.5 0.65 2.2E-05 51.9 11.9 24 208-231 103-126 (608)
349 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.062 2.1E-06 53.4 3.3 23 208-230 4-26 (260)
350 2ck3_D ATP synthase subunit be 92.5 0.14 4.8E-06 54.8 6.1 105 196-302 142-264 (482)
351 2r44_A Uncharacterized protein 92.5 0.068 2.3E-06 55.1 3.7 40 187-230 29-68 (331)
352 1z6g_A Guanylate kinase; struc 92.5 0.048 1.7E-06 52.6 2.3 23 208-230 23-45 (218)
353 2f1r_A Molybdopterin-guanine d 92.5 0.049 1.7E-06 50.4 2.3 23 208-230 2-24 (171)
354 3kl4_A SRP54, signal recogniti 92.5 0.28 9.7E-06 52.3 8.4 24 207-230 96-119 (433)
355 2iyv_A Shikimate kinase, SK; t 92.4 0.046 1.6E-06 51.0 2.0 22 209-230 3-24 (184)
356 3bh0_A DNAB-like replicative h 92.3 0.34 1.2E-05 49.6 8.6 52 208-263 68-119 (315)
357 1e6c_A Shikimate kinase; phosp 92.3 0.051 1.7E-06 50.0 2.2 22 209-230 3-24 (173)
358 1qf9_A UMP/CMP kinase, protein 92.3 0.067 2.3E-06 50.1 3.1 23 208-230 6-28 (194)
359 2vli_A Antibiotic resistance p 92.3 0.052 1.8E-06 50.4 2.3 23 208-230 5-27 (183)
360 2wsm_A Hydrogenase expression/ 92.3 0.077 2.6E-06 51.0 3.5 37 192-230 16-52 (221)
361 2bwj_A Adenylate kinase 5; pho 92.3 0.06 2.1E-06 50.8 2.7 23 208-230 12-34 (199)
362 3tlx_A Adenylate kinase 2; str 92.3 0.085 2.9E-06 51.8 3.8 24 207-230 28-51 (243)
363 2plr_A DTMP kinase, probable t 92.3 0.069 2.4E-06 50.9 3.1 23 208-230 4-26 (213)
364 3upu_A ATP-dependent DNA helic 92.2 0.47 1.6E-05 51.3 10.1 37 191-230 31-67 (459)
365 4a74_A DNA repair and recombin 92.2 0.15 5.1E-06 49.2 5.6 57 207-264 24-84 (231)
366 2grj_A Dephospho-COA kinase; T 92.2 0.073 2.5E-06 50.2 3.2 24 207-230 11-34 (192)
367 2pbr_A DTMP kinase, thymidylat 92.2 0.064 2.2E-06 50.3 2.8 21 210-230 2-22 (195)
368 4e22_A Cytidylate kinase; P-lo 92.2 0.068 2.3E-06 52.9 3.0 23 208-230 27-49 (252)
369 2r6a_A DNAB helicase, replicat 92.2 0.82 2.8E-05 49.3 11.9 50 208-260 203-252 (454)
370 3ney_A 55 kDa erythrocyte memb 92.1 0.067 2.3E-06 50.6 2.8 24 207-230 18-41 (197)
371 3sr0_A Adenylate kinase; phosp 92.1 0.56 1.9E-05 44.6 9.3 90 210-313 2-96 (206)
372 1zu4_A FTSY; GTPase, signal re 92.1 0.14 4.8E-06 52.5 5.4 24 207-230 104-127 (320)
373 1g8p_A Magnesium-chelatase 38 92.1 0.076 2.6E-06 55.1 3.4 45 184-230 23-67 (350)
374 3p32_A Probable GTPase RV1496/ 92.1 0.11 3.9E-06 54.1 4.8 37 194-230 65-101 (355)
375 1gtv_A TMK, thymidylate kinase 92.1 0.043 1.5E-06 52.5 1.4 22 209-230 1-22 (214)
376 2orw_A Thymidine kinase; TMTK, 92.1 0.019 6.5E-07 54.0 -1.2 22 209-230 4-25 (184)
377 2pt5_A Shikimate kinase, SK; a 92.0 0.073 2.5E-06 48.7 2.9 21 210-230 2-22 (168)
378 3dm5_A SRP54, signal recogniti 92.0 0.39 1.3E-05 51.2 8.8 24 207-230 99-122 (443)
379 2q6t_A DNAB replication FORK h 92.0 2.2 7.6E-05 45.7 15.1 55 207-264 199-253 (444)
380 2onk_A Molybdate/tungstate ABC 91.9 0.077 2.6E-06 52.0 3.1 24 207-231 24-47 (240)
381 2i3b_A HCR-ntpase, human cance 91.9 0.064 2.2E-06 50.5 2.3 22 210-231 3-24 (189)
382 3j16_B RLI1P; ribosome recycli 91.9 0.64 2.2E-05 52.0 10.8 125 209-333 379-531 (608)
383 2yhs_A FTSY, cell division pro 91.9 0.13 4.6E-06 55.5 5.1 24 207-230 292-315 (503)
384 3lnc_A Guanylate kinase, GMP k 91.9 0.059 2E-06 52.4 2.2 23 208-230 27-50 (231)
385 1rj9_A FTSY, signal recognitio 91.9 0.079 2.7E-06 54.0 3.1 24 207-230 101-124 (304)
386 1s96_A Guanylate kinase, GMP k 91.9 0.076 2.6E-06 51.3 2.9 25 207-231 15-39 (219)
387 2og2_A Putative signal recogni 91.8 0.13 4.6E-06 53.4 4.9 24 207-230 156-179 (359)
388 1vma_A Cell division protein F 91.8 0.13 4.5E-06 52.3 4.8 24 207-230 103-126 (306)
389 3l0o_A Transcription terminati 91.8 0.29 9.8E-06 50.9 7.2 35 195-230 163-197 (427)
390 2cdn_A Adenylate kinase; phosp 91.8 0.079 2.7E-06 50.2 2.9 24 207-230 19-42 (201)
391 3ozx_A RNAse L inhibitor; ATP 91.8 0.32 1.1E-05 53.6 8.1 126 208-333 294-449 (538)
392 2pez_A Bifunctional 3'-phospho 91.7 0.091 3.1E-06 48.7 3.1 23 208-230 5-27 (179)
393 2f6r_A COA synthase, bifunctio 91.6 0.09 3.1E-06 52.9 3.3 24 207-230 74-97 (281)
394 2ehv_A Hypothetical protein PH 91.6 0.082 2.8E-06 51.8 2.9 22 208-229 30-51 (251)
395 1um8_A ATP-dependent CLP prote 91.6 0.1 3.4E-06 55.0 3.7 44 187-230 23-94 (376)
396 1nn5_A Similar to deoxythymidy 91.6 0.089 3E-06 50.3 3.0 23 208-230 9-31 (215)
397 2wwf_A Thymidilate kinase, put 91.6 0.081 2.8E-06 50.4 2.7 23 208-230 10-32 (212)
398 3b9q_A Chloroplast SRP recepto 91.5 0.1 3.4E-06 53.1 3.5 24 207-230 99-122 (302)
399 3tif_A Uncharacterized ABC tra 91.5 0.082 2.8E-06 51.7 2.7 23 208-230 31-53 (235)
400 2pcj_A ABC transporter, lipopr 91.5 0.075 2.6E-06 51.5 2.5 23 208-230 30-52 (224)
401 1vht_A Dephospho-COA kinase; s 91.5 0.1 3.5E-06 50.1 3.4 23 208-230 4-26 (218)
402 3umf_A Adenylate kinase; rossm 91.5 0.1 3.6E-06 50.1 3.4 25 206-230 27-51 (217)
403 3b85_A Phosphate starvation-in 91.5 0.083 2.9E-06 50.5 2.7 22 209-230 23-44 (208)
404 1sq5_A Pantothenate kinase; P- 91.4 0.1 3.5E-06 53.3 3.5 24 207-230 79-102 (308)
405 1zd8_A GTP:AMP phosphotransfer 91.4 0.084 2.9E-06 51.1 2.7 23 208-230 7-29 (227)
406 4h09_A Hypothetical leucine ri 91.4 0.41 1.4E-05 50.1 8.3 100 522-624 234-339 (379)
407 2z0h_A DTMP kinase, thymidylat 91.4 0.094 3.2E-06 49.3 2.9 21 210-230 2-22 (197)
408 3vr4_D V-type sodium ATPase su 91.3 0.11 3.7E-06 55.4 3.5 92 209-302 152-259 (465)
409 1m7g_A Adenylylsulfate kinase; 91.3 0.1 3.5E-06 49.9 3.2 23 208-230 25-47 (211)
410 2v54_A DTMP kinase, thymidylat 91.2 0.094 3.2E-06 49.6 2.8 23 208-230 4-26 (204)
411 2iw3_A Elongation factor 3A; a 91.2 0.51 1.8E-05 55.4 9.4 120 208-332 461-607 (986)
412 3fwy_A Light-independent proto 91.2 0.11 3.8E-06 53.1 3.4 24 207-230 47-70 (314)
413 4h09_A Hypothetical leucine ri 91.2 0.56 1.9E-05 49.1 9.1 56 547-604 236-293 (379)
414 1aky_A Adenylate kinase; ATP:A 91.2 0.1 3.4E-06 50.3 2.9 23 208-230 4-26 (220)
415 3nwj_A ATSK2; P loop, shikimat 91.0 0.083 2.8E-06 52.1 2.2 23 208-230 48-70 (250)
416 1b0u_A Histidine permease; ABC 91.0 0.096 3.3E-06 52.1 2.7 24 208-231 32-55 (262)
417 1zak_A Adenylate kinase; ATP:A 91.0 0.092 3.1E-06 50.7 2.4 23 208-230 5-27 (222)
418 2d2e_A SUFC protein; ABC-ATPas 91.0 0.11 3.6E-06 51.4 2.9 24 208-231 29-52 (250)
419 3fb4_A Adenylate kinase; psych 90.9 0.11 3.7E-06 49.8 2.9 21 210-230 2-22 (216)
420 1np6_A Molybdopterin-guanine d 90.9 0.11 3.7E-06 48.1 2.8 23 208-230 6-28 (174)
421 2wji_A Ferrous iron transport 90.9 0.16 5.6E-06 46.1 3.9 23 209-231 4-26 (165)
422 1ji0_A ABC transporter; ATP bi 90.9 0.1 3.5E-06 51.1 2.7 24 208-231 32-55 (240)
423 2olj_A Amino acid ABC transpor 90.8 0.1 3.4E-06 52.0 2.6 24 208-231 50-73 (263)
424 1mv5_A LMRA, multidrug resista 90.8 0.11 3.8E-06 51.0 2.9 24 208-231 28-51 (243)
425 1g6h_A High-affinity branched- 90.8 0.11 3.6E-06 51.7 2.7 23 208-230 33-55 (257)
426 2zu0_C Probable ATP-dependent 90.7 0.12 4E-06 51.6 3.0 24 208-231 46-69 (267)
427 1pgv_A TMD-1, tropomodulin TMD 90.7 0.18 6.3E-06 47.5 4.1 64 524-587 37-111 (197)
428 2r9v_A ATP synthase subunit al 90.7 0.14 4.8E-06 55.2 3.6 101 197-302 165-278 (515)
429 3dl0_A Adenylate kinase; phosp 90.6 0.12 4.1E-06 49.5 2.9 21 210-230 2-22 (216)
430 2ff7_A Alpha-hemolysin translo 90.6 0.11 3.7E-06 51.2 2.6 24 208-231 35-58 (247)
431 3ake_A Cytidylate kinase; CMP 90.6 0.12 4.2E-06 48.9 2.9 21 210-230 4-24 (208)
432 3gqb_B V-type ATP synthase bet 90.5 0.083 2.9E-06 56.2 1.7 93 209-302 148-262 (464)
433 1oix_A RAS-related protein RAB 90.5 0.13 4.3E-06 48.3 2.8 25 208-232 29-53 (191)
434 1fx0_A ATP synthase alpha chai 90.4 0.14 4.8E-06 55.2 3.4 97 208-310 163-274 (507)
435 2ixe_A Antigen peptide transpo 90.3 0.12 4E-06 51.8 2.6 24 208-231 45-68 (271)
436 2qe7_A ATP synthase subunit al 90.3 0.14 4.9E-06 55.0 3.4 101 197-302 152-265 (502)
437 2ghi_A Transport protein; mult 90.3 0.12 4E-06 51.4 2.6 24 208-231 46-69 (260)
438 3d3q_A TRNA delta(2)-isopenten 90.3 0.14 4.8E-06 52.7 3.2 22 209-230 8-29 (340)
439 3hjn_A DTMP kinase, thymidylat 90.2 0.22 7.5E-06 47.1 4.3 50 210-261 2-51 (197)
440 2c61_A A-type ATP synthase non 90.1 0.094 3.2E-06 56.2 1.8 104 197-301 142-259 (469)
441 2dyk_A GTP-binding protein; GT 90.1 0.18 6.1E-06 45.3 3.4 24 209-232 2-25 (161)
442 2ihy_A ABC transporter, ATP-bi 90.1 0.13 4.5E-06 51.6 2.7 24 208-231 47-70 (279)
443 2zej_A Dardarin, leucine-rich 89.9 0.14 4.6E-06 47.6 2.5 22 210-231 4-25 (184)
444 3be4_A Adenylate kinase; malar 89.9 0.13 4.5E-06 49.4 2.4 23 208-230 5-27 (217)
445 1g41_A Heat shock protein HSLU 89.9 0.19 6.6E-06 53.7 3.9 44 187-230 17-72 (444)
446 2vp4_A Deoxynucleoside kinase; 89.9 0.13 4.3E-06 50.1 2.3 24 207-230 19-42 (230)
447 1fzq_A ADP-ribosylation factor 89.8 0.21 7E-06 46.3 3.7 26 206-231 14-39 (181)
448 1a7j_A Phosphoribulokinase; tr 89.8 0.11 3.8E-06 52.5 2.0 24 207-230 4-27 (290)
449 3r20_A Cytidylate kinase; stru 89.8 0.16 5.4E-06 49.4 2.9 23 208-230 9-31 (233)
450 3b5x_A Lipid A export ATP-bind 89.8 1.1 3.7E-05 50.1 10.2 25 207-231 368-392 (582)
451 1yrb_A ATP(GTP)binding protein 89.7 0.18 6.2E-06 49.8 3.4 24 207-230 13-36 (262)
452 2f9l_A RAB11B, member RAS onco 89.7 0.16 5.5E-06 47.8 2.9 24 208-231 5-28 (199)
453 4eaq_A DTMP kinase, thymidylat 89.6 0.22 7.5E-06 48.3 3.8 24 207-230 25-48 (229)
454 2lkc_A Translation initiation 89.6 0.27 9.3E-06 44.9 4.4 26 207-232 7-32 (178)
455 3sop_A Neuronal-specific septi 89.6 0.16 5.4E-06 50.8 2.8 21 210-230 4-24 (270)
456 3thx_A DNA mismatch repair pro 89.5 0.21 7.2E-06 58.6 4.2 22 207-228 661-682 (934)
457 2eyu_A Twitching motility prot 89.5 0.19 6.3E-06 50.0 3.3 111 208-332 25-135 (261)
458 3a8t_A Adenylate isopentenyltr 89.5 0.19 6.7E-06 51.5 3.5 23 208-230 40-62 (339)
459 3nh6_A ATP-binding cassette SU 89.4 0.14 4.9E-06 52.0 2.4 23 208-230 80-102 (306)
460 1e4v_A Adenylate kinase; trans 89.4 0.17 5.7E-06 48.5 2.8 21 210-230 2-22 (214)
461 1nij_A Hypothetical protein YJ 89.4 0.18 6E-06 51.8 3.1 25 207-231 3-27 (318)
462 2xb4_A Adenylate kinase; ATP-b 89.4 0.17 5.8E-06 48.8 2.9 21 210-230 2-22 (223)
463 2v3c_C SRP54, signal recogniti 89.2 0.22 7.5E-06 53.3 3.8 23 208-230 99-121 (432)
464 1ak2_A Adenylate kinase isoenz 89.2 0.19 6.5E-06 48.8 3.1 23 208-230 16-38 (233)
465 1svm_A Large T antigen; AAA+ f 89.2 0.27 9.1E-06 51.6 4.4 35 196-230 157-191 (377)
466 1q3t_A Cytidylate kinase; nucl 89.2 0.19 6.5E-06 48.9 3.1 25 206-230 14-38 (236)
467 2v9p_A Replication protein E1; 89.2 0.17 5.9E-06 51.3 2.8 24 207-230 125-148 (305)
468 2wjg_A FEOB, ferrous iron tran 89.2 0.22 7.6E-06 46.1 3.4 24 208-231 7-30 (188)
469 2qtf_A Protein HFLX, GTP-bindi 89.2 0.3 1E-05 51.0 4.8 26 207-232 178-203 (364)
470 1ltq_A Polynucleotide kinase; 89.1 0.19 6.5E-06 50.9 3.1 22 209-230 3-24 (301)
471 4a1f_A DNAB helicase, replicat 89.1 0.59 2E-05 48.1 6.8 52 208-263 46-97 (338)
472 2ce2_X GTPase HRAS; signaling 89.1 0.23 7.8E-06 44.6 3.3 23 210-232 5-27 (166)
473 3llm_A ATP-dependent RNA helic 89.0 1 3.5E-05 43.6 8.3 104 194-302 66-187 (235)
474 1tq4_A IIGP1, interferon-induc 89.0 0.16 5.5E-06 53.9 2.5 35 196-230 57-91 (413)
475 3cf2_A TER ATPase, transitiona 89.0 0.39 1.3E-05 55.3 5.9 92 187-302 479-581 (806)
476 3crm_A TRNA delta(2)-isopenten 89.0 0.2 6.8E-06 51.1 3.1 22 209-230 6-27 (323)
477 1q57_A DNA primase/helicase; d 88.8 1.8 6.3E-05 47.2 11.0 54 207-263 241-294 (503)
478 2qm8_A GTPase/ATPase; G protei 88.8 0.35 1.2E-05 50.0 4.8 34 197-230 44-77 (337)
479 1z2a_A RAS-related protein RAB 88.8 0.21 7.3E-06 45.0 2.9 24 208-231 5-28 (168)
480 1ls1_A Signal recognition part 88.7 0.24 8.1E-06 50.2 3.5 23 208-230 98-120 (295)
481 2nzj_A GTP-binding protein REM 88.7 0.22 7.5E-06 45.4 2.9 24 208-231 4-27 (175)
482 3con_A GTPase NRAS; structural 88.7 0.22 7.5E-06 46.3 3.0 24 209-232 22-45 (190)
483 2j37_W Signal recognition part 88.6 0.35 1.2E-05 52.7 4.9 24 207-230 100-123 (504)
484 3cmu_A Protein RECA, recombina 88.6 0.56 1.9E-05 59.0 7.2 85 209-300 1428-1514(2050)
485 2ck3_A ATP synthase subunit al 88.6 0.21 7.3E-06 53.8 3.1 103 197-302 152-273 (510)
486 1z08_A RAS-related protein RAB 88.5 0.29 9.9E-06 44.3 3.7 25 208-232 6-30 (170)
487 1u8z_A RAS-related protein RAL 88.5 0.23 8E-06 44.6 3.0 25 208-232 4-28 (168)
488 1nlf_A Regulatory protein REPA 88.3 0.21 7E-06 50.1 2.7 23 208-230 30-52 (279)
489 3exa_A TRNA delta(2)-isopenten 88.3 0.24 8.2E-06 50.2 3.1 23 208-230 3-25 (322)
490 1cr0_A DNA primase/helicase; R 88.2 0.22 7.4E-06 50.4 2.8 52 208-263 35-87 (296)
491 2p67_A LAO/AO transport system 88.2 0.37 1.3E-05 49.8 4.7 34 197-230 45-78 (341)
492 3fvq_A Fe(3+) IONS import ATP- 88.2 0.23 7.8E-06 51.6 3.0 24 208-231 30-53 (359)
493 1c1y_A RAS-related protein RAP 88.2 0.29 9.8E-06 44.1 3.4 23 209-231 4-26 (167)
494 2gj8_A MNME, tRNA modification 88.1 0.23 8E-06 45.5 2.7 23 209-231 5-27 (172)
495 3k1j_A LON protease, ATP-depen 88.0 0.3 1E-05 54.9 4.1 41 187-231 43-83 (604)
496 3end_A Light-independent proto 88.0 0.27 9.3E-06 49.9 3.4 25 206-230 39-63 (307)
497 2ged_A SR-beta, signal recogni 88.0 0.29 1E-05 45.5 3.4 26 207-232 47-72 (193)
498 2erx_A GTP-binding protein DI- 88.0 0.25 8.5E-06 44.7 2.8 23 209-231 4-26 (172)
499 1f6b_A SAR1; gtpases, N-termin 87.9 0.35 1.2E-05 45.5 3.9 34 197-231 15-48 (198)
500 3zvl_A Bifunctional polynucleo 87.8 0.24 8.2E-06 52.9 3.0 24 207-230 257-280 (416)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.1e-43 Score=394.74 Aligned_cols=274 Identities=17% Similarity=0.177 Sum_probs=215.7
Q ss_pred cccccccHHHHHHHHhcC-CCCcEEEEEEcCCCchhhHHHHHHHc--CCCccccCCcceEEEecCCC--CHHHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG-PSGLSVIAILDSNGFDKTVFAADIYN--NNHVKFYFDCLAWVRVSIGY--YFGKILDDIIN 261 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~il~ 261 (706)
.|||+.++++|.++|..+ +...++|+|+||||+||||||+++|+ |.+++.+|++++||++++.+ +..++++.|+.
T Consensus 130 ~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 130 CYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 369999999999999765 34689999999999999999999998 78999999999999999985 89999999999
Q ss_pred hcCCCCC--CccccCC-CHHHHHHHHHHHhcCC-ceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCccee----
Q 045386 262 SLMPPSR--ARVIIGE-DYHLKKSILRDYLTNK-KYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPILL---- 333 (706)
Q Consensus 262 ~l~~~~~--~~~~~~~-~~~~~~~~l~~~L~~k-r~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~---- 333 (706)
+++.... .....+. +.+++...+++.|++| ||||||||||+ ...+ .+.. .+||+||||||++.++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 9987632 1112334 6788899999999996 99999999999 6644 1111 1799999999998776
Q ss_pred -----------------------ecccc--------------ccCCCccceeeecccccccCCHHHHHHHHHHhCcCccc
Q 045386 334 -----------------------TFFEL--------------EHGGIIPLYSVPVGGPLIRLKHEAWQFFILHYGSAPLV 376 (706)
Q Consensus 334 -----------------------af~~~--------------~c~~glPLai~~~g~~L~~~~~~~w~~~~~~~~~~~l~ 376 (706)
+|... .| +|+||||+++|+.|+.+. |+.+ +.+.+. +.
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c-~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~-l~ 356 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELS-SGNPATLMMFFKSCEPKT---FEKM-AQLNNK-LE 356 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHH-TTCHHHHHHHHTTCCSSS---HHHH-HHHHHH-HH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh-CCChHHHHHHHHHhccch---HHHH-HHhHHH-hh
Confidence 34311 18 999999999999998774 4433 222221 11
Q ss_pred Cccchhhhhhccccc--ccccCCCcchHHHhh-----------hhccCCCCcEEchHhHHHHHHhC--CCCCCCc-----
Q 045386 377 NYMDEKVVLTLLSRI--CSVLELPFHLKVCCL-----------YLCVFRPGIEMSTRQLCQLWIAE--GFVPYNG----- 436 (706)
Q Consensus 377 ~~~~~~~~~~~~~~i--~sy~~L~~~lk~cfl-----------~~s~Fp~~~~i~~~~li~~W~a~--g~i~~~~----- 436 (706)
.. ....+..+ +||+.||.++|.||+ |||+||+++.|+ +++|+|+ ||+...+
T Consensus 357 ~~-----~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 357 SR-----GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HH-----CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred cc-----cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 10 11234444 999999999999999 999999999999 8999999 9997643
Q ss_pred HHHHHHHHHHHHhcCceeeeecCCCCCeeEEEcChhHHHHHHHhhcccCe
Q 045386 437 EETAEHYLKELIHRGFIQVSKRRAGGTIKACYVPSFVYTSLGLMADKTKF 486 (706)
Q Consensus 437 e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e~~ 486 (706)
++.++ ||++|+++||+++...+ ...+|+|||+||+||++++.++++
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 66666 99999999999987643 336899999999999999887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-35 Score=339.44 Aligned_cols=254 Identities=16% Similarity=0.141 Sum_probs=205.7
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCc-ceEEEecCCCCHHHHHHHHHHhcCC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDC-LAWVRVSIGYYFGKILDDIINSLMP 265 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~il~~l~~ 265 (706)
.|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 6999999999999998643 4789999999999999999999998889999997 9999999999998888888775432
Q ss_pred CC---CCcccc--C-C-CHHHHHHHHHHHh---cCCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCccee--
Q 045386 266 PS---RARVII--G-E-DYHLKKSILRDYL---TNKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPILL-- 333 (706)
Q Consensus 266 ~~---~~~~~~--~-~-~~~~~~~~l~~~L---~~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~-- 333 (706)
.. ....+. . . +.+.+...+++.| .+||+||||||||+ ...|+.+. +||+||||||++.++
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 11 100000 0 1 4566777888876 68999999999999 88887652 699999999998765
Q ss_pred -----e-----------cc--------------------ccccCCCccceeeecccccccCC--HHHHHHHHHHhCcCcc
Q 045386 334 -----T-----------FF--------------------ELEHGGIIPLYSVPVGGPLIRLK--HEAWQFFILHYGSAPL 375 (706)
Q Consensus 334 -----a-----------f~--------------------~~~c~~glPLai~~~g~~L~~~~--~~~w~~~~~~~~~~~l 375 (706)
. |. ...| +|+||||+++|+.|+.+. .+.|+.. .
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eIC-gGLPLALkLaGs~Lr~k~~s~eeW~~~------~-- 351 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHV------N-- 351 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHC-CCCHHHHHHHHHHHHHSCSSHHHHHHC------S--
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHh-CCCHHHHHHHHHHHhCCCCCHHHHhcC------C--
Confidence 0 10 0128 999999999999999884 8888753 1
Q ss_pred cCccchhhhhhcccc-c-ccccCCCcch-HHHhhhhccCCCCcEEchHhHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCc
Q 045386 376 VNYMDEKVVLTLLSR-I-CSVLELPFHL-KVCCLYLCVFRPGIEMSTRQLCQLWIAEGFVPYNGEETAEHYLKELIHRGF 452 (706)
Q Consensus 376 ~~~~~~~~~~~~~~~-i-~sy~~L~~~l-k~cfl~~s~Fp~~~~i~~~~li~~W~a~g~i~~~~e~~~~~~~~~L~~~~l 452 (706)
. ..+.. + +||+.||++. |+||+|||+||+++.|+.+.++.+|+++| ++.++.++++|+++||
T Consensus 352 --~-------~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSL 416 (1221)
T 1vt4_I 352 --C-------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSL 416 (1221)
T ss_dssp --C-------HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSS
T ss_pred --h-------hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCC
Confidence 1 23444 4 9999999999 99999999999999999999999999987 3468999999999999
Q ss_pred eeeeecCCCCCeeEEEcChhHHHHHH
Q 045386 453 IQVSKRRAGGTIKACYVPSFVYTSLG 478 (706)
Q Consensus 453 l~~~~~~~~~~~~~~~mHdlv~~~~~ 478 (706)
++... ...+|+|||++++++.
T Consensus 417 Lq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 417 VEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp SSBCS-----SSSEEBCCCHHHHHHH
T ss_pred EEEeC-----CCCEEEehHHHHHHhc
Confidence 99842 2257999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-34 Score=357.74 Aligned_cols=276 Identities=17% Similarity=0.238 Sum_probs=217.5
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCc-cccC-CcceEEEecCCCC--HHHHHHHHHHh
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHV-KFYF-DCLAWVRVSIGYY--FGKILDDIINS 262 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~i~~~il~~ 262 (706)
+|||++++++|.++|...+...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+..++..
T Consensus 126 ~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 205 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR 205 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHH
Confidence 999999999999999876667899999999999999999999996543 4555 5677999998654 44557778888
Q ss_pred cCCCCCCccccCCCHHHHHHHHHHHhcCC--ceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCccee-------
Q 045386 263 LMPPSRARVIIGEDYHLKKSILRDYLTNK--KYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPILL------- 333 (706)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~------- 333 (706)
+............+.+++...++..+.+| |+||||||||+ ...|..+ .+||+||||||++.++
T Consensus 206 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 206 LDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF-------DNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT-------CSSCEEEEEESSTTTTTTCCSCB
T ss_pred hhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCc
Confidence 87654321111227889999999999987 99999999999 7665543 6799999999999775
Q ss_pred ---------------------ecc-c-----------cccCCCccceeeecccccccCCHHHHHHHHHHhCcCc---ccC
Q 045386 334 ---------------------TFF-E-----------LEHGGIIPLYSVPVGGPLIRLKHEAWQFFILHYGSAP---LVN 377 (706)
Q Consensus 334 ---------------------af~-~-----------~~c~~glPLai~~~g~~L~~~~~~~w~~~~~~~~~~~---l~~ 377 (706)
++. . ..| +|+||||+++|++|+.++ ..|...++.+.... +..
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~-~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~ 355 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKEC-KGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRK 355 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHT-TTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSC
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHh-CCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhccc
Confidence 011 0 128 999999999999999877 45777766654331 111
Q ss_pred ccchhhhhhccccc--ccccCCCcchHHHhhhhccCCCCcEEchHhHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCceee
Q 045386 378 YMDEKVVLTLLSRI--CSVLELPFHLKVCCLYLCVFRPGIEMSTRQLCQLWIAEGFVPYNGEETAEHYLKELIHRGFIQV 455 (706)
Q Consensus 378 ~~~~~~~~~~~~~i--~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~li~~W~a~g~i~~~~e~~~~~~~~~L~~~~ll~~ 455 (706)
.. ....+.+..+ +||+.||+++|.||+|||+||+++.|+.+.++.+|.++ ++.++.++++|+++||++.
T Consensus 356 ~~--~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~ 426 (1249)
T 3sfz_A 356 SS--SYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFC 426 (1249)
T ss_dssp TT--CTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEE
T ss_pred cc--ccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEE
Confidence 10 0112334454 99999999999999999999999999999999999776 6889999999999999997
Q ss_pred eecCCCCCeeEEEcChhHHHHHHHhhccc
Q 045386 456 SKRRAGGTIKACYVPSFVYTSLGLMADKT 484 (706)
Q Consensus 456 ~~~~~~~~~~~~~mHdlv~~~~~~~~~~e 484 (706)
... +...+|+||+++|+|++..+.++
T Consensus 427 ~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 427 NRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred ecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 653 34467999999999999987754
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=8.6e-31 Score=299.74 Aligned_cols=271 Identities=17% Similarity=0.235 Sum_probs=205.8
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCc-cccC-CcceEEEecCCCCHHHHHHHH---HH
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHV-KFYF-DCLAWVRVSIGYYFGKILDDI---IN 261 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~~i---l~ 261 (706)
+|||+.++++|.++|.....+.++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...++..+ +.
T Consensus 126 ~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~ 204 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCT 204 (591)
T ss_dssp CCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred ecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHH
Confidence 999999999999999865556899999999999999999999997655 7889 47999999876 334444433 44
Q ss_pred hcCCCCCCccccCC-CHHHHHHHHHHHhcC--CceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCccee-----
Q 045386 262 SLMPPSRARVIIGE-DYHLKKSILRDYLTN--KKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPILL----- 333 (706)
Q Consensus 262 ~l~~~~~~~~~~~~-~~~~~~~~l~~~L~~--kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~----- 333 (706)
.++...... .... +.+.+...++..+.+ +++||||||||+ ...+.. + .+|++||||||+..++
T Consensus 205 ~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~~----l---~~~~~ilvTsR~~~~~~~~~~ 275 (591)
T 1z6t_A 205 RLDQDESFS-QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLKA----F---DSQCQILLTTRDKSVTDSVMG 275 (591)
T ss_dssp HHCSSCCSC-SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHHT----T---CSSCEEEEEESCGGGGTTCCS
T ss_pred Hhccccccc-cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHHH----h---cCCCeEEEECCCcHHHHhcCC
Confidence 555311100 1122 778888899998877 799999999998 554432 2 5689999999998754
Q ss_pred -----------------------ecc-c-----------cccCCCccceeeecccccccCCHHHHHHHHHHhCcCc---c
Q 045386 334 -----------------------TFF-E-----------LEHGGIIPLYSVPVGGPLIRLKHEAWQFFILHYGSAP---L 375 (706)
Q Consensus 334 -----------------------af~-~-----------~~c~~glPLai~~~g~~L~~~~~~~w~~~~~~~~~~~---l 375 (706)
++. . ..| +|+||||..+|+.|+.++ ..|...++.+.... +
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~-~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~ 353 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKEC-KGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRI 353 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHH-TTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCS
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHh-CCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHh
Confidence 111 0 117 999999999999998875 36887777664331 1
Q ss_pred cCccchhhhhhccccc--ccccCCCcchHHHhhhhccCCCCcEEchHhHHHHHHhCCCCCCCcHHHHHHHHHHHHhcCce
Q 045386 376 VNYMDEKVVLTLLSRI--CSVLELPFHLKVCCLYLCVFRPGIEMSTRQLCQLWIAEGFVPYNGEETAEHYLKELIHRGFI 453 (706)
Q Consensus 376 ~~~~~~~~~~~~~~~i--~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~li~~W~a~g~i~~~~e~~~~~~~~~L~~~~ll 453 (706)
.... ......+..+ +||+.||++.|.||++||+||+++.|+.+.++.+|.++ ++.+..++++|+++||+
T Consensus 354 ~~~~--~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 354 RKSS--SYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLL 424 (591)
T ss_dssp SCCC--SSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSS
T ss_pred hhcc--ccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCe
Confidence 1000 0011234444 99999999999999999999999999999999999765 56789999999999999
Q ss_pred eeeecCCCCCeeEEEcChhHHHHHHHhh
Q 045386 454 QVSKRRAGGTIKACYVPSFVYTSLGLMA 481 (706)
Q Consensus 454 ~~~~~~~~~~~~~~~mHdlv~~~~~~~~ 481 (706)
+.... +...+|+||+++|++++...
T Consensus 425 ~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 425 FCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred EEecC---CCccEEEEcHHHHHHHHhhh
Confidence 86542 33468999999999999874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.5e-17 Score=175.32 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=85.7
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCC-CCCccchhhcc-------
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSS-YIDQSPEDIWM------- 595 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~-~~~~lP~~l~~------- 595 (706)
+.++++|++|+|++|.++.+|..++.+++|++|+|++|.++.+|..++++++|++|++++| .++.+|..++.
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 4445666666666666655665566666666666666666666666666666666666664 44555554443
Q ss_pred --ccccceeee--c-CccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCC
Q 045386 596 --MQKLMHLNF--G-SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHK 670 (706)
Q Consensus 596 --L~~L~~L~l--~-~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 670 (706)
+++|++|++ + ...+|..++ .+++|++|++..+... . .+..++.+++|+.|++++|. ..+.+|..+..+++
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~-~-l~~~l~~l~~L~~L~Ls~n~--~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLS-A-LGPAIHHLPKLEELDLRGCT--ALRNYPPIFGGRAP 254 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCCC-C-CCGGGGGCTTCCEEECTTCT--TCCBCCCCTTCCCC
T ss_pred ccCCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCCC-c-CchhhccCCCCCEEECcCCc--chhhhHHHhcCCCC
Confidence 566666666 1 124555555 5666666655544432 2 34455566666666665554 44455555556666
Q ss_pred CcEEEEeeC
Q 045386 671 LECLKLVNE 679 (706)
Q Consensus 671 L~~L~L~~~ 679 (706)
|+.|+|++|
T Consensus 255 L~~L~L~~n 263 (328)
T 4fcg_A 255 LKRLILKDC 263 (328)
T ss_dssp CCEEECTTC
T ss_pred CCEEECCCC
Confidence 666666554
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=5.2e-17 Score=171.15 Aligned_cols=150 Identities=24% Similarity=0.296 Sum_probs=132.8
Q ss_pred CcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeec
Q 045386 526 KFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFG 605 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~ 605 (706)
....++.|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|+|++|.+..+|..++++++|++|++.
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999992
Q ss_pred --C--ccCCcchhcC---------CccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCc
Q 045386 606 --S--ITLPAPPKNY---------SSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLE 672 (706)
Q Consensus 606 --~--~~lp~~i~~~---------l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 672 (706)
. ..+|..++ . +++|++|++..+... . .+..++.+++|+.|++++|. ...+|..+..+++|+
T Consensus 159 ~n~~~~~~p~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~-~-lp~~l~~l~~L~~L~L~~N~---l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 159 ACPELTELPEPLA-STDASGEHQGLVNLQSLRLEWTGIR-S-LPASIANLQNLKSLKIRNSP---LSALGPAIHHLPKLE 232 (328)
T ss_dssp EETTCCCCCSCSE-EEC-CCCEEESTTCCEEEEEEECCC-C-CCGGGGGCTTCCEEEEESSC---CCCCCGGGGGCTTCC
T ss_pred CCCCccccChhHh-hccchhhhccCCCCCEEECcCCCcC-c-chHhhcCCCCCCEEEccCCC---CCcCchhhccCCCCC
Confidence 2 26777665 4 899999998887654 3 77889999999999999985 445777899999999
Q ss_pred EEEEeeCCC
Q 045386 673 CLKLVNESK 681 (706)
Q Consensus 673 ~L~L~~~~~ 681 (706)
.|++++|..
T Consensus 233 ~L~Ls~n~~ 241 (328)
T 4fcg_A 233 ELDLRGCTA 241 (328)
T ss_dssp EEECTTCTT
T ss_pred EEECcCCcc
Confidence 999999654
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=3e-16 Score=164.14 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=99.4
Q ss_pred cccCcccccEEEecCCCCC-cCCccccccccCcEEEcccCCcc-ccChhhcCCCCCcEEEccCCCCC-ccchhhcccc-c
Q 045386 523 FCKKFKHLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-RLPSLLCTLLNLETLEMPSSYID-QSPEDIWMMQ-K 598 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~~l~-~lP~~i~~L~~L~~L~L~~~~~~-~lP~~l~~L~-~ 598 (706)
.|.++++|++|+|++|.++ .+|..+.++++|++|+|++|.+. .+|..+..+++|++|++++|.+. .+|..++.++ +
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~ 175 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhc
Confidence 4555566666666666655 55555666666666666666555 45555666666666666666554 5555666655 6
Q ss_pred cceeeecCc----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEE
Q 045386 599 LMHLNFGSI----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECL 674 (706)
Q Consensus 599 L~~L~l~~~----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 674 (706)
|++|++... .+|..++ .++ |+.|++..+..... .+..++.+++|+.|++++|. ..... ..+..+++|+.|
T Consensus 176 L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~--l~~~~-~~~~~l~~L~~L 249 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNS--LAFDL-GKVGLSKNLNGL 249 (313)
T ss_dssp CCEEECCSSEEEEECCGGGG-GCC-CSEEECCSSEEEEC-CGGGCCTTSCCSEEECCSSE--ECCBG-GGCCCCTTCCEE
T ss_pred CcEEECcCCeeeccCChHHh-CCc-ccEEECcCCcccCc-CCHHHhcCCCCCEEECCCCc--eeeec-CcccccCCCCEE
Confidence 666666211 3455555 554 66666555444333 55566677777777777664 32233 336667777777
Q ss_pred EEeeCCCCCcc-ccC-CcccccccceEEecccC
Q 045386 675 KLVNESKPSWM-VLS-EYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 675 ~L~~~~~~~l~-~l~-~~~~p~~L~~L~L~~n~ 705 (706)
++++|.. . .++ ...-.++|+.|+|++|+
T Consensus 250 ~Ls~N~l---~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 250 DLRNNRI---YGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp ECCSSCC---EECCCGGGGGCTTCCEEECCSSE
T ss_pred ECcCCcc---cCcCChHHhcCcCCCEEECcCCc
Confidence 7777543 2 111 01113578888888774
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=1.5e-15 Score=158.33 Aligned_cols=178 Identities=18% Similarity=0.124 Sum_probs=119.4
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccCh--hhcCCCCCcEEEccCCCCCcc-chhhccccccc
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPS--LLCTLLNLETLEMPSSYIDQS-PEDIWMMQKLM 600 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~--~i~~L~~L~~L~L~~~~~~~l-P~~l~~L~~L~ 600 (706)
+..+++|++|+|++|.++.+|..+..+++|++|++++|.++.+|. .+..+++|++|++++|.+... |..+..+++|+
T Consensus 74 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred cccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 345677777777777777777777777777777777777776664 567777777787777766544 34567777888
Q ss_pred eeeecCc-----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEE
Q 045386 601 HLNFGSI-----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLK 675 (706)
Q Consensus 601 ~L~l~~~-----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 675 (706)
+|++... .+|..+. .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|+
T Consensus 154 ~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNN--FFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp EEECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC--CSBCCSGGGTTCTTCCEEE
T ss_pred EEECCCCccccccchhHHh-hCcCCCEEECCCCCcCCc-CHHHhcCCCCCCEEECCCCc--cCccChhhccCcccCCEeE
Confidence 8877221 2566677 777888887766654333 45667778888888887775 3333344677788888888
Q ss_pred EeeCCCCCccccCCcccccccceEEecccC
Q 045386 676 LVNESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 676 L~~~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
+++|.......-....+|++|+.|+|++|.
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 888543111111112335689999998885
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.61 E-value=1.6e-15 Score=158.60 Aligned_cols=175 Identities=10% Similarity=0.132 Sum_probs=99.4
Q ss_pred ccccCcccccEEEecCCCCC-cCCccccccccCcEEEcccCCcc-ccChhhcCCC-CCcEEEccCCCCC-ccchhhcccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-RLPSLLCTLL-NLETLEMPSSYID-QSPEDIWMMQ 597 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~~l~-~lP~~i~~L~-~L~~L~L~~~~~~-~lP~~l~~L~ 597 (706)
..|.++++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..++.+. +|++|++++|.+. .+|..+..++
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 34556666666666666665 55666666666666666666665 5666666665 6666666666554 5555666665
Q ss_pred ccceeeecCc----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcE
Q 045386 598 KLMHLNFGSI----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLEC 673 (706)
Q Consensus 598 ~L~~L~l~~~----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 673 (706)
|++|++... ..|..+. .+++|+.|++..+.... .+..+..+++|++|++++|. ..+.+|..+..+++|+.
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~--~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAF--DLGKVGLSKNLNGLDLRNNR--IYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCC-TTSCCSEEECCSSEECC--BGGGCCCCTTCCEEECCSSC--CEECCCGGGGGCTTCCE
T ss_pred -ccEEECcCCcccCcCCHHHh-cCCCCCEEECCCCceee--ecCcccccCCCCEEECcCCc--ccCcCChHHhcCcCCCE
Confidence 666666221 2444455 66666666655544422 23335666666666666664 44456666666666666
Q ss_pred EEEeeCCCCCcc-ccCCcccccccceEEecccC
Q 045386 674 LKLVNESKPSWM-VLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 674 L~L~~~~~~~l~-~l~~~~~p~~L~~L~L~~n~ 705 (706)
|++++|.. . .++...-.++|+.|++++|.
T Consensus 273 L~Ls~N~l---~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 273 LNVSFNNL---CGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCSSEE---EEECCCSTTGGGSCGGGTCSSS
T ss_pred EECcCCcc---cccCCCCccccccChHHhcCCC
Confidence 66666432 1 11111112456666666654
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=2.2e-15 Score=155.33 Aligned_cols=196 Identities=19% Similarity=0.182 Sum_probs=146.4
Q ss_pred CCceeEEEEeccCCCCceEEeeCCCccccCcccccEEEecCCCCCcC-CccccccccCcEEEcccCC-cccc-ChhhcCC
Q 045386 497 FANVKRYIILEHLTEGDHLAVIDCENFCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPS-LKRL-PSLLCTL 573 (706)
Q Consensus 497 ~~~~r~ls~~~~~~~~~~ll~f~~~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~-l~~l-P~~i~~L 573 (706)
+..+++|.+..+.... +. ...|..+++|++|+|++|.++.+ |..+..+++|++|++++|. +..+ |..+..+
T Consensus 31 ~~~l~~L~l~~n~i~~-----~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGNRISH-----VP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp CTTCSEEECTTSCCCE-----EC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCcCCc-----cC-HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 4466677665541110 00 04578889999999999998866 6778899999999999997 8877 5678899
Q ss_pred CCCcEEEccCCCCCcc-chhhccccccceeeecC---ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeE
Q 045386 574 LNLETLEMPSSYIDQS-PEDIWMMQKLMHLNFGS---ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTL 648 (706)
Q Consensus 574 ~~L~~L~L~~~~~~~l-P~~l~~L~~L~~L~l~~---~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L 648 (706)
++|++|++++|.+..+ |..+..+++|++|++.. ..+|.. ++ .+++|++|++..+..... .+..+..+++|+.|
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSV-PERAFRGLHSLDRL 182 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-cCCCccEEECCCCccccc-CHHHhcCccccCEE
Confidence 9999999999988877 45788899999999932 245544 67 888999998877655432 44458889999999
Q ss_pred EEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCC--cccccccceEEecccC
Q 045386 649 RISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSE--YQFPPSLIQLSLSIVR 705 (706)
Q Consensus 649 ~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~--~~~p~~L~~L~L~~n~ 705 (706)
++++|. .....|..+..+++|+.|++++|.. ..++. ....++|+.|+|++|.
T Consensus 183 ~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 183 LLHQNR--VAHVHPHAFRDLGRLMTLYLFANNL---SALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECCSSC--CCEECTTTTTTCTTCCEEECCSSCC---SCCCHHHHTTCTTCCEEECCSSC
T ss_pred ECCCCc--ccccCHhHccCcccccEeeCCCCcC---CcCCHHHcccCcccCEEeccCCC
Confidence 999886 5566688889999999999999643 32221 1123689999999885
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.61 E-value=4.8e-15 Score=163.38 Aligned_cols=176 Identities=20% Similarity=0.209 Sum_probs=111.0
Q ss_pred ccccCcccccEEEecCCCCCcCCcc-ccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCC-CCCccch-hhcccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPG-LENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSS-YIDQSPE-DIWMMQ 597 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~-~~~~lP~-~l~~L~ 597 (706)
..|.++++|++|+|++|.++.+|.. +..+++|++|+|++|.+..+|. .+.++++|++|++++| .+..+|. .+.+++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 3455666666666666666655533 5566666666666666666654 3566666666666664 5555555 466667
Q ss_pred ccceeee--cCc-cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEE
Q 045386 598 KLMHLNF--GSI-TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECL 674 (706)
Q Consensus 598 ~L~~L~l--~~~-~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 674 (706)
+|++|++ +.. .+| .+. .+++|++|++..+..... .+..+..+++|+.|++++|. .....+..+..+++|+.|
T Consensus 197 ~L~~L~L~~n~l~~~~-~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDMP-NLT-PLVGLEELEMSGNHFPEI-RPGSFHGLSSLKKLWVMNSQ--VSLIERNAFDGLASLVEL 271 (452)
T ss_dssp TCCEEECTTSCCSSCC-CCT-TCTTCCEEECTTSCCSEE-CGGGGTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcccccc-ccc-ccccccEEECcCCcCccc-CcccccCccCCCEEEeCCCc--CceECHHHhcCCCCCCEE
Confidence 7777776 222 333 456 666777777666554433 56667777777777777775 445556677778888888
Q ss_pred EEeeCCCCCccccCCccc--ccccceEEecccC
Q 045386 675 KLVNESKPSWMVLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 675 ~L~~~~~~~l~~l~~~~~--p~~L~~L~L~~n~ 705 (706)
+|++|. +..++...+ .++|+.|+|++|.
T Consensus 272 ~L~~N~---l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 272 NLAHNN---LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECCSSC---CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECCCCc---CCccChHHhccccCCCEEEccCCC
Confidence 888754 333332222 3688888888884
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=6.5e-15 Score=161.70 Aligned_cols=176 Identities=18% Similarity=0.164 Sum_probs=105.8
Q ss_pred ccccCcccccEEEecCCCCCcCCc-cccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCC-CCCccch-hhcccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPP-GLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSS-YIDQSPE-DIWMMQ 597 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~-~~~~lP~-~l~~L~ 597 (706)
..|.++++|+.|+|++|.++.+|. .+..+++|++|+|++|.+..+|. .+.++++|++|+|++| .+..+|. .+.+++
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 345566666666666666665553 35666666666666666666554 3556666666666664 5555554 456666
Q ss_pred ccceeee--cC-ccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEE
Q 045386 598 KLMHLNF--GS-ITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECL 674 (706)
Q Consensus 598 ~L~~L~l--~~-~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 674 (706)
+|++|++ +. ..+| .+. .+++|++|++..+..... .+..+..+++|+.|++++|. .....+..+..+++|+.|
T Consensus 186 ~L~~L~L~~n~l~~~~-~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIP-NLT-PLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQ--IQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp SCCEEECTTSCCSSCC-CCT-TCSSCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCC--CCEECTTSSTTCTTCCEE
T ss_pred ccCeecCCCCcCcccc-ccC-CCcccCEEECCCCccCcc-ChhhhccCccCCEEECCCCc--eeEEChhhhcCCCCCCEE
Confidence 6666666 21 2344 355 666666666665544332 45566777777777777665 444455667777777777
Q ss_pred EEeeCCCCCccccCCccc--ccccceEEecccC
Q 045386 675 KLVNESKPSWMVLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 675 ~L~~~~~~~l~~l~~~~~--p~~L~~L~L~~n~ 705 (706)
+|++|. +..++...+ .++|+.|+|++|.
T Consensus 261 ~L~~N~---l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 261 NLAHNN---LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTSC---CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCCC---CCccChhHhccccCCCEEEcCCCC
Confidence 777743 333322221 3678888888874
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=1.4e-15 Score=158.51 Aligned_cols=196 Identities=20% Similarity=0.189 Sum_probs=154.8
Q ss_pred CCceeEEEEeccCC-CCceEEeeCCCccccCcccccEEEecCCCCCcC---CccccccccCcEEEcccCCccccChhhcC
Q 045386 497 FANVKRYIILEHLT-EGDHLAVIDCENFCKKFKHLRVLNFGSAVLDQF---PPGLENLFLLKYLKLNIPSLKRLPSLLCT 572 (706)
Q Consensus 497 ~~~~r~ls~~~~~~-~~~~ll~f~~~~~~~~l~~L~~L~L~~~~l~~l---p~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~ 572 (706)
+..+++|.+..+.. ..+ ...|.++++|++|+|++|.++.+ |..+..+++|++|+|++|.+..+|..+..
T Consensus 27 ~~~l~~L~L~~n~l~~i~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~ 99 (306)
T 2z66_A 27 PSSATRLELESNKLQSLP-------HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 99 (306)
T ss_dssp CTTCCEEECCSSCCCCCC-------TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEET
T ss_pred CCCCCEEECCCCccCccC-------HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCC
Confidence 45677777665411 111 04578999999999999998854 67778899999999999999999999999
Q ss_pred CCCCcEEEccCCCCCccch--hhccccccceeeecCc----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCC
Q 045386 573 LLNLETLEMPSSYIDQSPE--DIWMMQKLMHLNFGSI----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVR 646 (706)
Q Consensus 573 L~~L~~L~L~~~~~~~lP~--~l~~L~~L~~L~l~~~----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 646 (706)
+++|++|++++|.+..+|. .+..+++|++|++... ..|..+. .+++|++|++..+.......+..++.+++|+
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 9999999999998888875 7899999999999332 3455577 8999999998877654422567789999999
Q ss_pred eEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCCcc--cccccceEEecccC
Q 045386 647 TLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSEYQ--FPPSLIQLSLSIVR 705 (706)
Q Consensus 647 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~~~--~p~~L~~L~L~~n~ 705 (706)
.|++++|. .....|..+..+++|+.|++++|.. ..++... ..++|+.|+|++|+
T Consensus 179 ~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 179 FLDLSQCQ--LEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EEECTTSC--CCEECTTTTTTCTTCCEEECTTSCC---SBCCSGGGTTCTTCCEEECTTSC
T ss_pred EEECCCCC--cCCcCHHHhcCCCCCCEEECCCCcc---CccChhhccCcccCCEeECCCCC
Confidence 99999986 5555678899999999999999653 3332212 24799999999985
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=9.7e-15 Score=149.24 Aligned_cols=171 Identities=25% Similarity=0.259 Sum_probs=100.2
Q ss_pred ccccEEEecCCCCCcCCc-cccccccCcEEEcccCCccccChhh-cCCCCCcEEEccCCCCCccch-hhccccccceeee
Q 045386 528 KHLRVLNFGSAVLDQFPP-GLENLFLLKYLKLNIPSLKRLPSLL-CTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNF 604 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~-~~~~L~~Lr~L~Ls~~~l~~lP~~i-~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l 604 (706)
+.|+.|+|++|.++.+|. .+..+++|++|+|++|.++.+|..+ .++++|++|++++|.+..+|. .+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 356677777777665553 4666777777777777776666553 566777777777776666665 3466677777776
Q ss_pred cC---ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCC
Q 045386 605 GS---ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 605 ~~---~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
.. ..+|.. ++ .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|++++|.
T Consensus 117 ~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 117 DRNQLKSLPPRVFD-SLTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRLYNNQ--LKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCeeCHHHhC-cCcCCCEEECCCCcCCcc-CHhHccCCcccceeEecCCc--CcEeChhHhccCCCcCEEECCCCc
Confidence 21 233333 45 666677776655544322 33346666777777776664 333333446666777777776643
Q ss_pred CCCccccCCccc--ccccceEEecccC
Q 045386 681 KPSWMVLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 681 ~~~l~~l~~~~~--p~~L~~L~L~~n~ 705 (706)
. ..++...+ .++|+.|+|++|.
T Consensus 193 l---~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 193 L---KRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp C---SCCCTTTTTTCTTCCEEECCSSC
T ss_pred C---CcCCHHHhccccCCCEEEecCCC
Confidence 2 22221111 2567777776663
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=8.4e-15 Score=152.78 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=120.2
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
+.+..+++|++|+|++|.++.++. +..+++|++|+|++|.++.+| .+..+++|++|++++|.+..+|. +..+++|++
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCE
Confidence 446677888888888888887776 788888888888888888776 67888888888888888887775 788888888
Q ss_pred eeecC--c-cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 602 LNFGS--I-TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 602 L~l~~--~-~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
|++.. . .+| .++ .+++|+.|++..+.... ...+..+++|+.|++++|. ...++. +..+++|+.|++++
T Consensus 134 L~l~~n~l~~~~-~l~-~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 134 LYLDLNQITNIS-PLA-GLTNLQYLSIGNAQVSD---LTPLANLSKLTTLKADDNK---ISDISP-LASLPNLIEVHLKN 204 (308)
T ss_dssp EECCSSCCCCCG-GGG-GCTTCCEEECCSSCCCC---CGGGTTCTTCCEEECCSSC---CCCCGG-GGGCTTCCEEECTT
T ss_pred EECCCCccCcCc-ccc-CCCCccEEEccCCcCCC---ChhhcCCCCCCEEECCCCc---cCcChh-hcCCCCCCEEEccC
Confidence 88822 2 333 377 77888888876665432 2237888888888888775 223332 67788888888888
Q ss_pred CCCCCccccCCcccccccceEEecccC
Q 045386 679 ESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 679 ~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
|.. ..++.....++|+.|+|++|+
T Consensus 205 N~l---~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 205 NQI---SDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp SCC---CBCGGGTTCTTCCEEEEEEEE
T ss_pred Ccc---CccccccCCCCCCEEEccCCe
Confidence 543 222222334678888888774
No 16
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.1e-14 Score=150.48 Aligned_cols=146 Identities=22% Similarity=0.230 Sum_probs=85.1
Q ss_pred cccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhcccccccee
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHL 602 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L 602 (706)
.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .+..+++|++|++++|.+..+| .+..+++|++|
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L 139 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESL 139 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEE
T ss_pred hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEE
Confidence 35556666666666666665554 666666666666666666655 3666666666666666666653 45666666666
Q ss_pred ee--cCccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 603 NF--GSITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 603 ~l--~~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
++ +...-...++ .+++|++|++..+.... .+ .+..+++|+.|++++|. ...++ .+..+++|+.|++++|
T Consensus 140 ~l~~n~l~~~~~l~-~l~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~L~~N~---i~~l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 140 YLGNNKITDITVLS-RLTKLDTLSLEDNQISD--IV-PLAGLTKLQNLYLSKNH---ISDLR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSCCCCCGGGG-GCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSSC---CCBCG-GGTTCTTCSEEEEEEE
T ss_pred EccCCcCCcchhhc-cCCCCCEEEccCCcccc--ch-hhcCCCccCEEECCCCc---CCCCh-hhccCCCCCEEECcCC
Confidence 66 2221123455 66666666655544322 12 26666666666666653 22233 3566666666666664
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=9.2e-15 Score=160.51 Aligned_cols=175 Identities=21% Similarity=0.242 Sum_probs=145.2
Q ss_pred ccccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQK 598 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~ 598 (706)
..|.++++|++|+|++|.++.++ ..|..+++|++|+|++|.++.+|. .+..+++|++|+|++|.+..+|. .+.++++
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 56889999999999999999765 678999999999999999999987 48999999999999999999887 7889999
Q ss_pred cceeeecC----ccCCc-chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcE
Q 045386 599 LMHLNFGS----ITLPA-PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLEC 673 (706)
Q Consensus 599 L~~L~l~~----~~lp~-~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 673 (706)
|++|++.. ..+|. .+. .+++|++|++..+... ..+.+..+++|+.|++++|. .....+..+..+++|+.
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n~l~---~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFE-GLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNH--LSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTT-TCSSCCEEECTTSCCS---SCCCCTTCSSCCEEECTTSC--CCEECTTTTTTCTTCCE
T ss_pred cCEeCCCCCCCcceeCcchhh-cccccCeecCCCCcCc---cccccCCCcccCEEECCCCc--cCccChhhhccCccCCE
Confidence 99999932 24554 467 8999999998877653 33468999999999999986 66666889999999999
Q ss_pred EEEeeCCCCCccccCCccc--ccccceEEecccC
Q 045386 674 LKLVNESKPSWMVLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 674 L~L~~~~~~~l~~l~~~~~--p~~L~~L~L~~n~ 705 (706)
|+|++|.. ..+....+ .++|+.|+|++|+
T Consensus 236 L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 236 LWMIQSQI---QVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp EECTTCCC---CEECTTSSTTCTTCCEEECTTSC
T ss_pred EECCCCce---eEEChhhhcCCCCCCEEECCCCC
Confidence 99999653 33322222 4799999999985
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=1.6e-14 Score=147.73 Aligned_cols=154 Identities=22% Similarity=0.279 Sum_probs=116.2
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccchh-hcccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPED-IWMMQKL 599 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L 599 (706)
+.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|.. ++++++|++|++++|.+..+|.. ++.+++|
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 45677888888888888887754 678888888888888888877765 57888888888888888877764 6788888
Q ss_pred ceeeecC---ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEE
Q 045386 600 MHLNFGS---ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLK 675 (706)
Q Consensus 600 ~~L~l~~---~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 675 (706)
++|++.. ..+|.. ++ .+++|++|++..+..... .+..++.+++|+.|++++|. ..+..+..+..+++|+.|+
T Consensus 136 ~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 136 TYLNLAHNQLQSLPKGVFD-KLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCccCHHHhc-cCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCc--CCccCHHHHhCCcCCCEEE
Confidence 8888822 245544 56 788888888777665433 44557888888888888876 4444555678888888888
Q ss_pred EeeCC
Q 045386 676 LVNES 680 (706)
Q Consensus 676 L~~~~ 680 (706)
+++|.
T Consensus 212 l~~N~ 216 (272)
T 3rfs_A 212 LHDNP 216 (272)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 88853
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=1.4e-14 Score=149.58 Aligned_cols=170 Identities=21% Similarity=0.188 Sum_probs=105.8
Q ss_pred ccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeec-
Q 045386 528 KHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFG- 605 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~- 605 (706)
+.+++|+|++|.++.+ |..+..+++|++|+|++|.++.+|.. +.+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 4677777777777654 35567777777777777777766644 66777777777777777777777777777777772
Q ss_pred --CccCCc-chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCC
Q 045386 606 --SITLPA-PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKP 682 (706)
Q Consensus 606 --~~~lp~-~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 682 (706)
...+|+ .+. .+++|++|++..+..... .+..+..+++|+.|++++|. .....+..+..+++|+.|+|++|.
T Consensus 110 N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~L~~L~L~~N~-- 183 (290)
T 1p9a_G 110 NRLTSLPLGALR-GLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN--LTELPAGLLNGLENLDTLLLQENS-- 183 (290)
T ss_dssp SCCCCCCSSTTT-TCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC--CSCCCTTTTTTCTTCCEEECCSSC--
T ss_pred CcCcccCHHHHc-CCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc--CCccCHHHhcCcCCCCEEECCCCc--
Confidence 224443 355 677777777666554332 44446677777777777664 222222345667777777777743
Q ss_pred CccccCCccc-ccccceEEecccC
Q 045386 683 SWMVLSEYQF-PPSLIQLSLSIVR 705 (706)
Q Consensus 683 ~l~~l~~~~~-p~~L~~L~L~~n~ 705 (706)
+..++...+ .++|+.|+|++|.
T Consensus 184 -l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 184 -LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCCCCTTTTTTCCCSEEECCSCC
T ss_pred -CCccChhhcccccCCeEEeCCCC
Confidence 333322111 2467777777663
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=1.9e-14 Score=148.16 Aligned_cols=172 Identities=18% Similarity=0.196 Sum_probs=138.6
Q ss_pred cccccEEEecCCCCCcCC-ccccccccCcEEEcccCCcccc-ChhhcCCCCCcEEEccCCC-CCcc-chhhcccccccee
Q 045386 527 FKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRL-PSLLCTLLNLETLEMPSSY-IDQS-PEDIWMMQKLMHL 602 (706)
Q Consensus 527 l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~l-P~~i~~L~~L~~L~L~~~~-~~~l-P~~l~~L~~L~~L 602 (706)
.+.|+.|++++|.++.+| ..+..+++|++|++++|.++.+ |..+.++++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 468999999999999776 5689999999999999999987 6779999999999999996 8888 5689999999999
Q ss_pred eecC---ccC-CcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 603 NFGS---ITL-PAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 603 ~l~~---~~l-p~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
++.. ..+ |..+. .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 111 ~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFR-GLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp ECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCEECHhHhh-CCcCCCEEECCCCccccc-CHhHhccCCCccEEECCCCc--ccccCHHHhcCccccCEEECCC
Confidence 9932 244 45577 899999999887765433 45568999999999999885 4444445688999999999999
Q ss_pred CCCCCccccCCccc--ccccceEEecccC
Q 045386 679 ESKPSWMVLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 679 ~~~~~l~~l~~~~~--p~~L~~L~L~~n~ 705 (706)
|.. ....+..+ .++|+.|+|++|+
T Consensus 187 n~l---~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 187 NRV---AHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp SCC---CEECTTTTTTCTTCCEEECCSSC
T ss_pred Ccc---cccCHhHccCcccccEeeCCCCc
Confidence 653 22211112 3789999999985
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=1.5e-14 Score=150.91 Aligned_cols=167 Identities=21% Similarity=0.209 Sum_probs=138.0
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
+..+++|+.|++++|.++.+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 456889999999999999887 68999999999999999999987 999999999999999999887 689999999999
Q ss_pred ec--Cc-cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCC
Q 045386 604 FG--SI-TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 604 l~--~~-~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
++ .. .+| .+. .+++|++|++..+.... ...++.+++|+.|++++|. ...++. +..+++|+.|++++|.
T Consensus 114 l~~n~l~~~~-~l~-~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 114 LTSTQITDVT-PLA-GLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQ---VSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp CTTSCCCCCG-GGT-TCTTCCEEECCSSCCCC---CGGGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCCCCCCch-hhc-CCCCCCEEECCCCccCc---CccccCCCCccEEEccCCc---CCCChh-hcCCCCCCEEECCCCc
Confidence 93 22 444 488 99999999987776532 3348999999999999885 333444 8899999999999965
Q ss_pred CCCccccCCcccccccceEEecccC
Q 045386 681 KPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 681 ~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
. ..++.....++|++|+|++|+
T Consensus 185 l---~~~~~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 185 I---SDISPLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp C---CCCGGGGGCTTCCEEECTTSC
T ss_pred c---CcChhhcCCCCCCEEEccCCc
Confidence 4 333322335799999999985
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=7.2e-15 Score=156.39 Aligned_cols=179 Identities=18% Similarity=0.143 Sum_probs=129.1
Q ss_pred ccccCcccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccch--hhcccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPE--DIWMMQ 597 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~--~l~~L~ 597 (706)
..|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+|.. ++++++|++|++++|.+..+|. .+..++
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 3577888899999999888866 45688889999999999988888876 7888899999999988888887 678888
Q ss_pred ccceeeecC----ccC-CcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHh-cCCCCCC
Q 045386 598 KLMHLNFGS----ITL-PAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKS-LCELHKL 671 (706)
Q Consensus 598 ~L~~L~l~~----~~l-p~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L 671 (706)
+|++|++.. ..+ |..++ .+++|++|++..+..... .+..++.+++|+.|+++++. ...++.. +..+++|
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~---l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQ---HILLLEIFVDVTSSV 224 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSC---STTHHHHHHHHTTTE
T ss_pred CCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCcc-CHHHHhccccCCeecCCCCc---cccchhhhhhhcccc
Confidence 999998821 233 44577 888888888777665443 56778888889999988875 3444443 4457889
Q ss_pred cEEEEeeCCCCC--ccccCCcccccccceEEecccC
Q 045386 672 ECLKLVNESKPS--WMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 672 ~~L~L~~~~~~~--l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
+.|++++|.... ...+......+.++.++|++|.
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred cEEECCCCccccccccccccccccchhhcccccccc
Confidence 999998865411 1112222234567777777653
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=1.7e-14 Score=158.98 Aligned_cols=175 Identities=23% Similarity=0.242 Sum_probs=145.1
Q ss_pred ccccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccch-hhccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPE-DIWMMQK 598 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~ 598 (706)
..|.++++|+.|+|++|.++.++ ..|..+++|++|+|++|.++.+|.. +..+++|++|+|++|.+..+|. .+.++++
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 172 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc
Confidence 56889999999999999999665 6789999999999999999999876 7889999999999999999987 7889999
Q ss_pred cceeeecC----ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcE
Q 045386 599 LMHLNFGS----ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLEC 673 (706)
Q Consensus 599 L~~L~l~~----~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 673 (706)
|++|++.. ..+|.. +. .+++|++|++..+... ....+..+++|+.|++++|. .....|..+..+++|+.
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n~l~---~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFE-GLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNH--FPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTT-TCTTCCEEECTTSCCS---SCCCCTTCTTCCEEECTTSC--CSEECGGGGTTCTTCCE
T ss_pred ccEEeCCCCCCccccChhhcc-CCCCCCEEECCCCccc---ccccccccccccEEECcCCc--CcccCcccccCccCCCE
Confidence 99999932 245543 67 8999999998877653 23468899999999999987 66667889999999999
Q ss_pred EEEeeCCCCCccccCCccc--ccccceEEecccC
Q 045386 674 LKLVNESKPSWMVLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 674 L~L~~~~~~~l~~l~~~~~--p~~L~~L~L~~n~ 705 (706)
|++++|.. ..+....+ .++|+.|+|++|+
T Consensus 247 L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 247 LWVMNSQV---SLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp EECTTSCC---CEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCcC---ceECHHHhcCCCCCCEEECCCCc
Confidence 99999653 33322222 3799999999985
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=2.4e-14 Score=147.83 Aligned_cols=172 Identities=20% Similarity=0.135 Sum_probs=142.7
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccC-hhhcCCCCCcEEEccCCCCCccchhhcccccccee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLP-SLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHL 602 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP-~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L 602 (706)
+.++++|+.++++++.++.+|..+. ++|++|+|++|.++.++ ..+.++++|++|+|++|.+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 5778999999999999999997765 69999999999999775 5689999999999999999999875 889999999
Q ss_pred eec---CccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 603 NFG---SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 603 ~l~---~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
+++ ...+|..+. .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|++++|
T Consensus 83 ~Ls~N~l~~l~~~~~-~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp ECCSSCCSSCCCCTT-TCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCCcCCcCchhhc-cCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCC--CCccChhhcccccCCCEEECCCC
Confidence 992 237888888 999999999887766543 55779999999999999986 44444556788999999999995
Q ss_pred CCCCccccCCccc--ccccceEEecccC
Q 045386 680 SKPSWMVLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 680 ~~~~l~~l~~~~~--p~~L~~L~L~~n~ 705 (706)
. +..++...+ .++|+.|+|++|+
T Consensus 159 ~---l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 159 N---LTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp C---CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred c---CCccCHHHhcCcCCCCEEECCCCc
Confidence 4 444443332 4799999999985
No 25
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=1.4e-14 Score=148.53 Aligned_cols=176 Identities=19% Similarity=0.125 Sum_probs=133.3
Q ss_pred ccccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccC-hhhcCCCCCcEEEccCCCCCccch-hhccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLP-SLLCTLLNLETLEMPSSYIDQSPE-DIWMMQK 598 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP-~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~ 598 (706)
..|.++++|++|++++|.++.++ ..+..+++|++|+|++|.++.+| ..+.++++|++|++++|.+..++. .++.+++
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 36788899999999999988765 46889999999999999998776 468899999999999998888876 6889999
Q ss_pred cceeeec--Cc---cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCC----eEEEEccCCcCccchHHhcCCCC
Q 045386 599 LMHLNFG--SI---TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVR----TLRISGDLSYYQSGVSKSLCELH 669 (706)
Q Consensus 599 L~~L~l~--~~---~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~----~L~l~~~~~~~~~~~~~~l~~l~ 669 (706)
|++|++. .. .+|..++ .+++|++|++..+..... .+..+..+++|+ .|++++|. ...++.......
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~l~l~L~ls~n~---l~~~~~~~~~~~ 200 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNP---MNFIQPGAFKEI 200 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCEEEECCSSC---CCEECTTSSCSC
T ss_pred CCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcC-CHHHhhhhhhccccceeeecCCCc---ccccCccccCCC
Confidence 9999992 22 3688888 999999999877765433 444555555555 77887774 344445555556
Q ss_pred CCcEEEEeeCCCCCccccCCcc--cccccceEEecccC
Q 045386 670 KLECLKLVNESKPSWMVLSEYQ--FPPSLIQLSLSIVR 705 (706)
Q Consensus 670 ~L~~L~L~~~~~~~l~~l~~~~--~p~~L~~L~L~~n~ 705 (706)
+|+.|++++|.. ..++... -.++|+.|+|++|.
T Consensus 201 ~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 201 RLKELALDTNQL---KSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEEECCSSCC---SCCCTTTTTTCCSCCEEECCSSC
T ss_pred cccEEECCCCce---eecCHhHhcccccccEEEccCCc
Confidence 899999999643 3333222 24789999999885
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=1.9e-14 Score=147.32 Aligned_cols=173 Identities=18% Similarity=0.179 Sum_probs=120.2
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchh-hcccccccee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHL 602 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L 602 (706)
...++.|+.|++++|.++.++ .+..+++|++|++++|.+..+| .++.+++|++|++++|.+..+|.. +..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 456777888888888877665 4777888888888888887765 677888888888888877777663 6778888888
Q ss_pred eecC---ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 603 NFGS---ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 603 ~l~~---~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
++.. ..+|.. ++ .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 115 ~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQ--LQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp ECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCccCHHHhc-cCCCCCEEECCCCccCcc-CHHHhccCccCCEEECCCCC--cCccCHHHhcCCccCCEEECCC
Confidence 8822 244444 56 778888888776654432 44456788888888888775 4444445567788888888888
Q ss_pred CCCCCccccCCc--ccccccceEEecccC
Q 045386 679 ESKPSWMVLSEY--QFPPSLIQLSLSIVR 705 (706)
Q Consensus 679 ~~~~~l~~l~~~--~~p~~L~~L~L~~n~ 705 (706)
|.. ..++.. ...++|+.|+|++|.
T Consensus 191 N~l---~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 191 NQL---KSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SCC---SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcC---CccCHHHHhCCcCCCEEEccCCC
Confidence 543 222221 123678888888774
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.1e-14 Score=171.16 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=58.4
Q ss_pred CCcccc--ccccCcEEEcccCCc-cccChhhcCCCCCcEEEccCCC-CCc--cchhhcccc-------ccceeeec---C
Q 045386 543 FPPGLE--NLFLLKYLKLNIPSL-KRLPSLLCTLLNLETLEMPSSY-IDQ--SPEDIWMMQ-------KLMHLNFG---S 606 (706)
Q Consensus 543 lp~~~~--~L~~Lr~L~Ls~~~l-~~lP~~i~~L~~L~~L~L~~~~-~~~--lP~~l~~L~-------~L~~L~l~---~ 606 (706)
+|..++ ++++|++|+|++|.+ ..+|..+++|++|++|+|++|. +.. +|..++.++ +|++|++. .
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 444444 455555555555442 2444445555555555555553 432 444444443 45555541 1
Q ss_pred ccCCc--chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCC-CcEEEEeeC
Q 045386 607 ITLPA--PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHK-LECLKLVNE 679 (706)
Q Consensus 607 ~~lp~--~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~L~~~ 679 (706)
..+|. .++ .+++|++|++..+... . .| .++.+++|+.|++++|. . ..+|..+..+++ |+.|+|++|
T Consensus 561 ~~ip~~~~l~-~L~~L~~L~Ls~N~l~-~-lp-~~~~L~~L~~L~Ls~N~--l-~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 561 EEFPASASLQ-KMVKLGLLDCVHNKVR-H-LE-AFGTNVKLTDLKLDYNQ--I-EEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CBCCCHHHHT-TCTTCCEEECTTSCCC-B-CC-CCCTTSEESEEECCSSC--C-SCCCTTSCEECTTCCEEECCSS
T ss_pred CccCChhhhh-cCCCCCEEECCCCCcc-c-ch-hhcCCCcceEEECcCCc--c-ccchHHHhhccccCCEEECcCC
Confidence 14444 444 4445555544443332 1 22 44444444444444442 1 144444444444 444444443
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.54 E-value=2.2e-14 Score=168.73 Aligned_cols=176 Identities=19% Similarity=0.243 Sum_probs=106.8
Q ss_pred cccCcccccEEEecCCCCC-cCCccccccccCcEEEcccCCcc-ccChhhcCCCCCcEEEccCCCCC-ccchhhcccccc
Q 045386 523 FCKKFKHLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-RLPSLLCTLLNLETLEMPSSYID-QSPEDIWMMQKL 599 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~~l~-~lP~~i~~L~~L~~L~L~~~~~~-~lP~~l~~L~~L 599 (706)
.+..++.|++|++++|.++ .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 3455666666666666655 55666666666666666666665 55666666666666666666554 556666666666
Q ss_pred ceeeecCc----cCCcc---------------------------------------------------------------
Q 045386 600 MHLNFGSI----TLPAP--------------------------------------------------------------- 612 (706)
Q Consensus 600 ~~L~l~~~----~lp~~--------------------------------------------------------------- 612 (706)
++|++... .+|..
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 66666111 33332
Q ss_pred -------hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCcc
Q 045386 613 -------PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWM 685 (706)
Q Consensus 613 -------i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~ 685 (706)
++ .+++|+.|++..+..... .|..++.+++|+.|++++|. ..+.+|..++.+++|+.|+|++|.. .
T Consensus 621 ~g~~~~~~~-~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~--l~g~ip~~l~~L~~L~~LdLs~N~l---~ 693 (768)
T 3rgz_A 621 GGHTSPTFD-NNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHND--ISGSIPDEVGDLRGLNILDLSSNKL---D 693 (768)
T ss_dssp EEECCCSCS-SSBCCCEEECCSSCCBSC-CCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSSCC---E
T ss_pred cccCchhhh-ccccccEEECcCCccccc-CCHHHhccccCCEEeCcCCc--cCCCCChHHhCCCCCCEEECCCCcc---c
Confidence 22 334455555555444333 66777777777777777776 6667777777777777777777543 2
Q ss_pred ccCCccc--ccccceEEecccC
Q 045386 686 VLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 686 ~l~~~~~--p~~L~~L~L~~n~ 705 (706)
...+..+ .++|++|+|++|+
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSE
T ss_pred CcCChHHhCCCCCCEEECcCCc
Confidence 1111111 2578888888874
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=1.8e-14 Score=147.72 Aligned_cols=172 Identities=20% Similarity=0.181 Sum_probs=135.8
Q ss_pred ccccEEEecCCCCCcCCc-cccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccc-hhhccccccceeee
Q 045386 528 KHLRVLNFGSAVLDQFPP-GLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSP-EDIWMMQKLMHLNF 604 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~-~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP-~~l~~L~~L~~L~l 604 (706)
+.|++|++++|.++.++. .+..+++|++|++++|.++.+|. .+.++++|++|++++|.+..+| ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 469999999999997765 78999999999999999998876 6899999999999999998887 47899999999999
Q ss_pred cC---ccCCc-chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCc----EEEE
Q 045386 605 GS---ITLPA-PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLE----CLKL 676 (706)
Q Consensus 605 ~~---~~lp~-~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~----~L~L 676 (706)
.. ..++. .++ .+++|++|++..+.......+..++.+++|+.|++++|. .....+..+..+.+|+ +|++
T Consensus 108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeec
Confidence 32 24444 578 899999999887766543257889999999999999986 4444445555555555 8999
Q ss_pred eeCCCCCccccCCccc-ccccceEEecccC
Q 045386 677 VNESKPSWMVLSEYQF-PPSLIQLSLSIVR 705 (706)
Q Consensus 677 ~~~~~~~l~~l~~~~~-p~~L~~L~L~~n~ 705 (706)
++|. +..++...+ ..+|+.|+|++|+
T Consensus 185 s~n~---l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 185 SLNP---MNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp CSSC---CCEECTTSSCSCCEEEEECCSSC
T ss_pred CCCc---ccccCccccCCCcccEEECCCCc
Confidence 8854 333332222 2489999999985
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.53 E-value=5.2e-14 Score=156.13 Aligned_cols=174 Identities=20% Similarity=0.166 Sum_probs=108.9
Q ss_pred CCCceeEEEEeccCCCCceEEeeCCCccccCcccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccChh-hcCC
Q 045386 496 PFANVKRYIILEHLTEGDHLAVIDCENFCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPSL-LCTL 573 (706)
Q Consensus 496 ~~~~~r~ls~~~~~~~~~~ll~f~~~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L 573 (706)
.+..++.|.+..+.... +. ...|.++++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+|.. +.++
T Consensus 30 ~~~~l~~L~L~~n~l~~----~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKT----LN--QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CCTTCSEEECCSSCCCE----EC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCcEEECCCCccce----EC--HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 34567777766541100 00 04566777777777777777754 56677777777777777777777754 5677
Q ss_pred CCCcEEEccCCCCCcc-chhhccccccceeeecCc---c-CCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeE
Q 045386 574 LNLETLEMPSSYIDQS-PEDIWMMQKLMHLNFGSI---T-LPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTL 648 (706)
Q Consensus 574 ~~L~~L~L~~~~~~~l-P~~l~~L~~L~~L~l~~~---~-lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L 648 (706)
++|++|+|++|.+..+ |..+..+++|++|++... . .|..+. .+++|++|++..+..... .+..+..+++|+.|
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L 181 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVL 181 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCccc-ChhHhcccCCCcEE
Confidence 7777777777766655 346777777777777222 2 244566 777777777666544332 44456677777777
Q ss_pred EEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 649 RISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 649 ~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
+++++. .....+..+..+++|+.|++++|
T Consensus 182 ~l~~n~--i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 182 RLRHLN--INAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp EEESCC--CCEECTTCSCSCTTCCEEEEECC
T ss_pred eCCCCc--CcEeChhhcccCcccceeeCCCC
Confidence 777664 33333445566666666666654
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.53 E-value=6.7e-15 Score=169.21 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=90.3
Q ss_pred CcccccEEEecCCCCC-cCCccccccccCcEEEcccCC-cc--ccChhhcCC------CCCcEEEccCCCCCccch--hh
Q 045386 526 KFKHLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIPS-LK--RLPSLLCTL------LNLETLEMPSSYIDQSPE--DI 593 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~~-l~--~lP~~i~~L------~~L~~L~L~~~~~~~lP~--~l 593 (706)
++++|++|+|++|.+. .+|..++++++|++|++++|. ++ .+|..+++| ++|++|++++|.+..+|. .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 5555555555555543 455555555555555555555 54 355555554 555566665555555555 55
Q ss_pred ccccccceeeec---Cc-cCCcchhcCCccCcccccccccccCCCCchhcCCCCC-CCeEEEEccCCcCccchHHhcCCC
Q 045386 594 WMMQKLMHLNFG---SI-TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPS-VRTLRISGDLSYYQSGVSKSLCEL 668 (706)
Q Consensus 594 ~~L~~L~~L~l~---~~-~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~l~~l 668 (706)
+++++|++|++. .. .+| .++ .+++|++|++..+... . .|..++.+++ |+.|++++|. ...+|..+..+
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~-~-lp~~l~~l~~~L~~L~Ls~N~---l~~lp~~~~~~ 399 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAYNQIT-E-IPANFCGFTEQVENLSFAHNK---LKYIPNIFDAK 399 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCSSEEE-E-CCTTSEEECTTCCEEECCSSC---CSSCCSCCCTT
T ss_pred ccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCCCccc-c-ccHhhhhhcccCcEEEccCCc---Ccccchhhhhc
Confidence 555566666551 11 344 555 5555555555444433 2 4445555665 6666666553 22455555544
Q ss_pred C--CCcEEEEeeCCCCC-----ccccCCcc-cccccceEEecccC
Q 045386 669 H--KLECLKLVNESKPS-----WMVLSEYQ-FPPSLIQLSLSIVR 705 (706)
Q Consensus 669 ~--~L~~L~L~~~~~~~-----l~~l~~~~-~p~~L~~L~L~~n~ 705 (706)
+ +|+.|++++|.... +....... -.++|+.|+|++|+
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 3 56666666643200 11000000 12477788887774
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.52 E-value=7.3e-14 Score=153.87 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=56.9
Q ss_pred ccccCcccccEEEecCCCCCcC-CccccccccCcEEEcccCCccc-cChh--hcCCCCCcEEEccCCCCCcc-chh-hcc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKR-LPSL--LCTLLNLETLEMPSSYIDQS-PED-IWM 595 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~-lP~~--i~~L~~L~~L~L~~~~~~~l-P~~-l~~ 595 (706)
..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.++. +|.. ++++++|++|+|++|.+..+ |.. +.+
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence 3467777777788877777744 5667777777777777777763 3433 66777777777777766655 433 666
Q ss_pred ccccceeee
Q 045386 596 MQKLMHLNF 604 (706)
Q Consensus 596 L~~L~~L~l 604 (706)
+++|++|++
T Consensus 153 l~~L~~L~L 161 (455)
T 3v47_A 153 MRRFHVLDL 161 (455)
T ss_dssp CTTCCEEEC
T ss_pred CCcccEEeC
Confidence 777777766
No 33
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=2.6e-14 Score=162.16 Aligned_cols=148 Identities=22% Similarity=0.255 Sum_probs=96.8
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
+.+..+++|+.|+|++|.++.+|. +..+++|++|+|++|.+..+| .++.|++|+.|+|++|.+..+| .+..|++|+.
T Consensus 59 ~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 135 (605)
T 1m9s_A 59 QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLES 135 (605)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSE
T ss_pred hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCE
Confidence 345667777777777777776655 677777777777777777665 5677777777777777776664 4677777777
Q ss_pred eeec--CccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 602 LNFG--SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 602 L~l~--~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
|+++ ...-...+. .+++|+.|++..+.... .+. +..+++|+.|++++|. ...+ ..+..+++|+.|+|++|
T Consensus 136 L~Ls~N~l~~l~~l~-~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~---i~~l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 136 LYLGNNKITDITVLS-RLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNH---ISDL-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSSCCCCCGGGG-SCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC---CCBC-GGGTTCTTCSEEECCSE
T ss_pred EECCCCccCCchhhc-ccCCCCEEECcCCcCCC--chh-hccCCCCCEEECcCCC---CCCC-hHHccCCCCCEEEccCC
Confidence 7772 222224566 77777777766554432 222 7777777777777764 2223 35667777777777775
Q ss_pred C
Q 045386 680 S 680 (706)
Q Consensus 680 ~ 680 (706)
.
T Consensus 208 ~ 208 (605)
T 1m9s_A 208 E 208 (605)
T ss_dssp E
T ss_pred c
Confidence 3
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=6.5e-15 Score=153.95 Aligned_cols=193 Identities=15% Similarity=0.049 Sum_probs=141.6
Q ss_pred CCceeEEEEeccCC--CCceEEeeCCCcc-ccCcccccEEEecCCCCCcCCcccccc-----ccCcEEEcccCCccccC-
Q 045386 497 FANVKRYIILEHLT--EGDHLAVIDCENF-CKKFKHLRVLNFGSAVLDQFPPGLENL-----FLLKYLKLNIPSLKRLP- 567 (706)
Q Consensus 497 ~~~~r~ls~~~~~~--~~~~ll~f~~~~~-~~~l~~L~~L~L~~~~l~~lp~~~~~L-----~~Lr~L~Ls~~~l~~lP- 567 (706)
....++|.+..+.. ..+. .+ +..+++|++|+|++|.++.+|..++.+ ++|++|+|++|.+..+|
T Consensus 94 l~~L~~L~L~~n~l~~~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPP-------PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCC-------CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred cCCccEEEccCCcccchhHH-------HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 34667777666411 1110 22 378999999999999999778888877 89999999999999887
Q ss_pred hhhcCCCCCcEEEccCCCCCc---cchhh--ccccccceeeecCccC------Ccc-hhcCCccCcccccccccccCCCC
Q 045386 568 SLLCTLLNLETLEMPSSYIDQ---SPEDI--WMMQKLMHLNFGSITL------PAP-PKNYSSSLKNLIFISALNPSSCT 635 (706)
Q Consensus 568 ~~i~~L~~L~~L~L~~~~~~~---lP~~l--~~L~~L~~L~l~~~~l------p~~-i~~~l~~L~~L~~~~~~~~~~~~ 635 (706)
..++++++|++|++++|.+.. +|..+ +.+++|++|++....+ |.. +. .+++|++|++..+.......
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA-ARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH-TTCCCSEEECTTSCCCSSCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh-cCCCCCEEECCCCcCCcccc
Confidence 678999999999999997543 35555 8899999999943322 222 34 67899999988776644312
Q ss_pred chhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCCcccccccceEEecccC
Q 045386 636 PDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 636 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
...+..+++|+.|++++|. ...+|..+. ++|+.|++++|.. ..++...-.++|++|+|++|+
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~---l~~ip~~~~--~~L~~L~Ls~N~l---~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTG---LKQVPKGLP--AKLSVLDLSYNRL---DRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSCCCCCTTCCEEECTTSC---CSSCCSSCC--SEEEEEECCSSCC---CSCCCTTTSCEEEEEECTTCT
T ss_pred hhhhhhcCCCCEEECCCCc---cChhhhhcc--CCceEEECCCCCC---CCChhHhhCCCCCEEeccCCC
Confidence 3556778999999999885 347777776 8999999999654 333222224789999999985
No 35
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.1e-13 Score=139.60 Aligned_cols=148 Identities=23% Similarity=0.276 Sum_probs=78.5
Q ss_pred ccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccch-hhccccccceeee
Q 045386 528 KHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNF 604 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l 604 (706)
+.|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+|.. +..+++|++|+|++|.+..+|. .+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 34566666666655443 3455566666666666666554433 4556666666666665555554 3455666666666
Q ss_pred cC---ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 605 GS---ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 605 ~~---~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
.. ..+|.. +. .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|++++|
T Consensus 115 ~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 115 GGNQLKSLPSGVFD-RLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQ--LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCcCCCcChhHhc-cCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCCc--CCccCHHHHhCCCCCCEEEeeCC
Confidence 11 134433 34 555666665554443322 33345556666666665554 33333335555566666666553
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.51 E-value=6.1e-14 Score=147.82 Aligned_cols=173 Identities=18% Similarity=0.176 Sum_probs=91.0
Q ss_pred cccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCC---ccchhhccc--
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYID---QSPEDIWMM-- 596 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~---~lP~~l~~L-- 596 (706)
.|.++++|++|++++|.++.+|..+. ++|++|++++|.+..+|.. +.++++|++|++++|.+. ..|..+..+
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L 174 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence 35555566666666666555554443 5566666666666555543 556666666666666543 223333333
Q ss_pred ------------------cccceeeecCc---cCC-cchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 597 ------------------QKLMHLNFGSI---TLP-APPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 597 ------------------~~L~~L~l~~~---~lp-~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
++|++|++... .++ ..+. .+++|++|++..+..... .+..++.+++|+.|++++|.
T Consensus 175 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp SCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCCCCC-CTTGGGGCTTCCEEECCSSC
T ss_pred CEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCcC-ChhHhhCCCCCCEEECCCCc
Confidence 12333333110 112 3344 555566666555443322 34456666677777776663
Q ss_pred CcCccchHHhcCCCCCCcEEEEeeCCCCCccccCCc--------ccccccceEEecccC
Q 045386 655 SYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSEY--------QFPPSLIQLSLSIVR 705 (706)
Q Consensus 655 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~~--------~~p~~L~~L~L~~n~ 705 (706)
...+|..+..+++|+.|++++|.. ..++.. ...++|+.|++++|.
T Consensus 253 ---l~~lp~~l~~l~~L~~L~l~~N~l---~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 253 ---LSRVPAGLPDLKLLQVVYLHTNNI---TKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp ---CCBCCTTGGGCTTCCEEECCSSCC---CBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred ---CeecChhhhcCccCCEEECCCCCC---CccChhHccccccccccccccceEeecCc
Confidence 335666677777777777777543 211111 112467777777774
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.1e-13 Score=141.37 Aligned_cols=169 Identities=22% Similarity=0.207 Sum_probs=136.0
Q ss_pred ccccEEEecCCCCCcCCccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccchh-hccccccceeeec
Q 045386 528 KHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHLNFG 605 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L~l~ 605 (706)
..++.++++++.++.+|..+. .+|++|+|++|.+..+|. .+.++++|++|+|++|.+..+|.. +..+++|++|++.
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 457899999999999997665 689999999999999886 689999999999999999999885 5789999999993
Q ss_pred C---ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCC
Q 045386 606 S---ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESK 681 (706)
Q Consensus 606 ~---~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 681 (706)
. ..+|.. +. .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|++++|..
T Consensus 94 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 94 DNKLQALPIGVFD-QLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNE--LQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp SSCCCCCCTTTTT-TCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCcCCHhHcc-cccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCc--CCccCHhHccCCcccceeEecCCcC
Confidence 2 255654 56 899999999887665443 56668999999999999985 4444445588999999999999643
Q ss_pred CCccccCCccc--ccccceEEecccC
Q 045386 682 PSWMVLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 682 ~~l~~l~~~~~--p~~L~~L~L~~n~ 705 (706)
..++...+ .++|+.|+|++|+
T Consensus 170 ---~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 170 ---KRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp ---SCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---cEeChhHhccCCCcCEEECCCCc
Confidence 33332222 3799999999985
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.51 E-value=6.8e-14 Score=150.95 Aligned_cols=83 Identities=20% Similarity=0.265 Sum_probs=61.0
Q ss_pred ccccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccChhh-cCCCCCcEEEccCCCCCccch-hhccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPSLL-CTLLNLETLEMPSSYIDQSPE-DIWMMQK 598 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~~i-~~L~~L~~L~L~~~~~~~lP~-~l~~L~~ 598 (706)
..|.++++|++|+|++|.++.+| ..++.+++|++|+|++|.++.+|..+ .++++|++|++++|.+..+|. .+..+++
T Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence 35677777888888887777654 44677788888888888777777664 677788888888777766654 5777777
Q ss_pred cceeee
Q 045386 599 LMHLNF 604 (706)
Q Consensus 599 L~~L~l 604 (706)
|++|++
T Consensus 167 L~~L~l 172 (390)
T 3o6n_A 167 LQNLQL 172 (390)
T ss_dssp CCEEEC
T ss_pred CCEEEC
Confidence 777777
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.51 E-value=6.6e-15 Score=169.22 Aligned_cols=175 Identities=15% Similarity=0.210 Sum_probs=143.3
Q ss_pred ccccCcccccEEEecCCCCCc------------------CCcccc--ccccCcEEEcccCCcc-ccChhhcCCCCCcEEE
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQ------------------FPPGLE--NLFLLKYLKLNIPSLK-RLPSLLCTLLNLETLE 580 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~------------------lp~~~~--~L~~Lr~L~Ls~~~l~-~lP~~i~~L~~L~~L~ 580 (706)
..+.++++|++|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..++++++|++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 457889999999999999987 999998 9999999999999864 7899999999999999
Q ss_pred ccCCC-CC--ccchhhccc------cccceeeec---CccCCc--chhcCCccCcccccccccccCCCCchhcCCCCCCC
Q 045386 581 MPSSY-ID--QSPEDIWMM------QKLMHLNFG---SITLPA--PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVR 646 (706)
Q Consensus 581 L~~~~-~~--~lP~~l~~L------~~L~~L~l~---~~~lp~--~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 646 (706)
+++|. +. .+|..++.+ ++|++|++. ...+|. .++ .+++|++|++..+..... .+ .++.+++|+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~-~l~~L~~L~L~~N~l~g~-ip-~~~~l~~L~ 356 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGK-LP-AFGSEIKLA 356 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT-TCTTCCEEECCSCCCEEE-CC-CCEEEEEES
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc-cCCCCCEEeCcCCcCccc-hh-hhCCCCCCC
Confidence 99996 77 489988887 999999992 237888 788 999999999877765433 55 888899999
Q ss_pred eEEEEccCCcCccchHHhcCCCCC-CcEEEEeeCCCCCccccCCc-cc--ccccceEEecccC
Q 045386 647 TLRISGDLSYYQSGVSKSLCELHK-LECLKLVNESKPSWMVLSEY-QF--PPSLIQLSLSIVR 705 (706)
Q Consensus 647 ~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~l~~l~~~-~~--p~~L~~L~L~~n~ 705 (706)
.|++++|. ...+|..+..+++ |+.|++++|.. ..++.. .. .++|+.|+|++|+
T Consensus 357 ~L~L~~N~---l~~lp~~l~~l~~~L~~L~Ls~N~l---~~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 357 SLNLAYNQ---ITEIPANFCGFTEQVENLSFAHNKL---KYIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp EEECCSSE---EEECCTTSEEECTTCCEEECCSSCC---SSCCSCCCTTCSSCEEEEECCSSC
T ss_pred EEECCCCc---cccccHhhhhhcccCcEEEccCCcC---cccchhhhhcccCccCEEECcCCc
Confidence 99999884 4488888999999 99999999654 333211 11 2479999999985
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=5.2e-14 Score=160.66 Aligned_cols=150 Identities=19% Similarity=0.215 Sum_probs=98.6
Q ss_pred cccCcccccEEEecCCCCCcCCc-cccccccCcEEEcccCCccccChhh-cCCCCCcEEEccCCCCCccch-hhcccccc
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPP-GLENLFLLKYLKLNIPSLKRLPSLL-CTLLNLETLEMPSSYIDQSPE-DIWMMQKL 599 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~Lr~L~Ls~~~l~~lP~~i-~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L 599 (706)
.|.++++|++|+|++|.++.+|+ .++.+++|++|+|++|.++.+|..+ +++++|++|+|++|.+..+|+ .++.+++|
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 57778888888888888776654 4677888888888888888877764 778888888888887776655 57778888
Q ss_pred ceeeecCc---cCCcchhcCCccCccc----------------------------------------ccccccccCCCCc
Q 045386 600 MHLNFGSI---TLPAPPKNYSSSLKNL----------------------------------------IFISALNPSSCTP 636 (706)
Q Consensus 600 ~~L~l~~~---~lp~~i~~~l~~L~~L----------------------------------------~~~~~~~~~~~~~ 636 (706)
++|++... .+| ++ .+++|+.| ++..+.. ..+
T Consensus 174 ~~L~L~~N~l~~~~--~~-~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l---~~~ 247 (597)
T 3oja_B 174 QNLQLSSNRLTHVD--LS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL---TDT 247 (597)
T ss_dssp CEEECTTSCCSBCC--GG-GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC---CCC
T ss_pred cEEECcCCCCCCcC--hh-hhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCC---CCC
Confidence 88887222 222 22 22222222 2211111 123
Q ss_pred hhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCC
Q 045386 637 DILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 637 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
..++.+++|+.|++++|. ..+..|..++.+++|+.|+|++|.
T Consensus 248 ~~l~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp GGGGGCTTCSEEECCSSC--CCEEESGGGTTCSSCCEEECTTSC
T ss_pred hhhccCCCCCEEECCCCc--cCCCCHHHhcCccCCCEEECCCCC
Confidence 456677777777777775 555566777777777777777754
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.51 E-value=7.7e-14 Score=150.51 Aligned_cols=107 Identities=16% Similarity=0.262 Sum_probs=90.8
Q ss_pred ccccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccchh-hccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPED-IWMMQK 598 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~ 598 (706)
..|.++++|++|+|++|.++.+| ..+..+++|++|+|++|.+..+|+. ++++++|++|++++|.+..+|.. +.++++
T Consensus 63 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 45788999999999999999776 4799999999999999999988654 79999999999999999999986 589999
Q ss_pred cceeeecCc---cCC-cchhcCCccCccccccccc
Q 045386 599 LMHLNFGSI---TLP-APPKNYSSSLKNLIFISAL 629 (706)
Q Consensus 599 L~~L~l~~~---~lp-~~i~~~l~~L~~L~~~~~~ 629 (706)
|++|++... .++ ..++ .+++|++|++..+.
T Consensus 143 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNR 176 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTS-SCTTCCEEECCSSC
T ss_pred CcEEECCCCccCccChhhcc-CCCCCCEEECCCCc
Confidence 999999322 443 4477 88889988876654
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.50 E-value=1.1e-13 Score=145.70 Aligned_cols=174 Identities=17% Similarity=0.125 Sum_probs=99.6
Q ss_pred cccCcccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch-hhccccccc
Q 045386 523 FCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLM 600 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~ 600 (706)
.|.++++|++|+|++|.++.+ |..++.+++|++|++++|.++.+|..+. ++|++|++++|.+..+|. .+.++++|+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 456666666666666666644 5556666666666666666666665543 456666666665555544 355555555
Q ss_pred eeeecCc------cCCcchhcCCccCccccc---------------------ccccccCCCCchhcCCCCCCCeEEEEcc
Q 045386 601 HLNFGSI------TLPAPPKNYSSSLKNLIF---------------------ISALNPSSCTPDILDRLPSVRTLRISGD 653 (706)
Q Consensus 601 ~L~l~~~------~lp~~i~~~l~~L~~L~~---------------------~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 653 (706)
+|++... ..|..+. .+++|++|++ ..+..... .+..++.+++|+.|++++|
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCcChhhcc-CCCCcCEEECCCCccccCCccccccCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCC
Confidence 5555211 1233344 4444444444 33332222 3456777777777777776
Q ss_pred CCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCC-cccccccceEEecccC
Q 045386 654 LSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSE-YQFPPSLIQLSLSIVR 705 (706)
Q Consensus 654 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~-~~~p~~L~~L~L~~n~ 705 (706)
. .....+..+..+++|+.|++++|.. ..++. ....++|++|+|++|+
T Consensus 227 ~--l~~~~~~~~~~l~~L~~L~L~~N~l---~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 227 S--ISAVDNGSLANTPHLRELHLNNNKL---VKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp C--CCEECTTTGGGSTTCCEEECCSSCC---SSCCTTTTTCSSCCEEECCSSC
T ss_pred c--CceeChhhccCCCCCCEEECCCCcC---ccCChhhccCCCcCEEECCCCc
Confidence 5 3344445667777777787777543 22221 1123678888888875
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.50 E-value=2.1e-13 Score=143.60 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=111.4
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccC---------------------------hhhcCCC
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLP---------------------------SLLCTLL 574 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP---------------------------~~i~~L~ 574 (706)
..|.++++|++|++++|.++.+|..+. ++|++|++++|.+..+| ..+.+++
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred HHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 345666777777777776666554433 44555555555544443 3344455
Q ss_pred CCcEEEccCCCCCccchhhccccccceeeecCc---c-CCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEE
Q 045386 575 NLETLEMPSSYIDQSPEDIWMMQKLMHLNFGSI---T-LPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRI 650 (706)
Q Consensus 575 ~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~~~---~-lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l 650 (706)
+|++|++++|.+..+|..+. ++|++|++... . .|..+. .+++|++|++..+..... .+..++.+++|+.|++
T Consensus 172 ~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 172 KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHL 247 (330)
T ss_dssp TCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEEC
T ss_pred CcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCcee-ChhhccCCCCCCEEEC
Confidence 55555555555555554332 55666666221 2 255677 889999999877765443 4557889999999999
Q ss_pred EccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCCcc--------cccccceEEecccC
Q 045386 651 SGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSEYQ--------FPPSLIQLSLSIVR 705 (706)
Q Consensus 651 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~~~--------~p~~L~~L~L~~n~ 705 (706)
++|. ...+|..+..+++|+.|++++|.. ..++... ..++|+.|++++|.
T Consensus 248 ~~N~---l~~lp~~l~~l~~L~~L~l~~N~i---~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 248 NNNK---LVKVPGGLADHKYIQVVYLHNNNI---SAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CSSC---CSSCCTTTTTCSSCCEEECCSSCC---CCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCc---CccCChhhccCCCcCEEECCCCcC---CccChhhcCCcccccccccccceEeecCc
Confidence 9984 457888899999999999999654 2222111 13689999999985
No 44
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.50 E-value=1e-13 Score=163.06 Aligned_cols=178 Identities=22% Similarity=0.200 Sum_probs=141.6
Q ss_pred ccccCcccccEEEecCCCCC-cCCccccccccCcEEEcccCCcc-ccChhhcCCCCCcEEEccCCCCC-ccchhhccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-RLPSLLCTLLNLETLEMPSSYID-QSPEDIWMMQK 598 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~~l~-~lP~~i~~L~~L~~L~L~~~~~~-~lP~~l~~L~~ 598 (706)
..+.+++.|+.|++++|.++ .+|..++.+++|++|++++|.+. .+|..++++++|++|+|++|.+. .+|..++.+++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 56788889999999999987 77888999999999999999887 78888999999999999999776 78889999999
Q ss_pred cceeee--cCc--cCCcchhcCCccCcccccccccccCC-----------------------------------------
Q 045386 599 LMHLNF--GSI--TLPAPPKNYSSSLKNLIFISALNPSS----------------------------------------- 633 (706)
Q Consensus 599 L~~L~l--~~~--~lp~~i~~~l~~L~~L~~~~~~~~~~----------------------------------------- 633 (706)
|++|++ +.. .+|..++ .+++|+.|++..+.....
T Consensus 516 L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp CCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 999999 222 6788899 999999988776543211
Q ss_pred ----------------------------CCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCcc
Q 045386 634 ----------------------------CTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWM 685 (706)
Q Consensus 634 ----------------------------~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~ 685 (706)
..+..++.+++|+.|++++|. ..+.+|..++.+++|+.|+|++|.. .
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~--l~g~ip~~l~~l~~L~~L~Ls~N~l---~ 669 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM--LSGYIPKEIGSMPYLFILNLGHNDI---S 669 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC--CBSCCCGGGGGCTTCCEEECCSSCC---C
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc--ccccCCHHHhccccCCEEeCcCCcc---C
Confidence 012245567788999999887 7788999999999999999999653 2
Q ss_pred ccCCccc--ccccceEEecccC
Q 045386 686 VLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 686 ~l~~~~~--p~~L~~L~L~~n~ 705 (706)
...+..+ .++|+.|+|++|+
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCChHHhCCCCCCEEECCCCc
Confidence 1111111 3689999999996
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=3.8e-14 Score=148.12 Aligned_cols=173 Identities=18% Similarity=0.130 Sum_probs=133.3
Q ss_pred CcccccEEEecCCCCC-cCCccc--cccccCcEEEcccCCccccChhhcCC-----CCCcEEEccCCCCCccc-hhhccc
Q 045386 526 KFKHLRVLNFGSAVLD-QFPPGL--ENLFLLKYLKLNIPSLKRLPSLLCTL-----LNLETLEMPSSYIDQSP-EDIWMM 596 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~-~lp~~~--~~L~~Lr~L~Ls~~~l~~lP~~i~~L-----~~L~~L~L~~~~~~~lP-~~l~~L 596 (706)
++++|++|+|++|.++ .+|..+ ..+++|++|+|++|.++.+|..++.+ ++|++|++++|.+..+| ..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6889999999999988 678776 88999999999999999888888877 89999999999988887 588999
Q ss_pred cccceeeecCcc------CCcch--hcCCccCcccccccccccCC-CCc-hhcCCCCCCCeEEEEccCCcCccchH-Hhc
Q 045386 597 QKLMHLNFGSIT------LPAPP--KNYSSSLKNLIFISALNPSS-CTP-DILDRLPSVRTLRISGDLSYYQSGVS-KSL 665 (706)
Q Consensus 597 ~~L~~L~l~~~~------lp~~i--~~~l~~L~~L~~~~~~~~~~-~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~-~~l 665 (706)
++|++|+++... +|..+ + .+++|++|++..+..... ..+ ..+..+++|+.|++++|. ..+..| ..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~ 249 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPL-KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS--LRDAAGAPSC 249 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTT-SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC--CCSSCCCSCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhc-cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc--CCcccchhhh
Confidence 999999994332 34444 7 888999999877655311 012 224578899999999886 333333 455
Q ss_pred CCCCCCcEEEEeeCCCCCccccCCcccccccceEEecccC
Q 045386 666 CELHKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 666 ~~l~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
..+++|+.|++++|. +..++... +++|++|+|++|+
T Consensus 250 ~~l~~L~~L~Ls~N~---l~~ip~~~-~~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTG---LKQVPKGL-PAKLSVLDLSYNR 285 (312)
T ss_dssp CCCTTCCEEECTTSC---CSSCCSSC-CSEEEEEECCSSC
T ss_pred hhcCCCCEEECCCCc---cChhhhhc-cCCceEEECCCCC
Confidence 668899999999954 44444323 3789999999985
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=153.09 Aligned_cols=150 Identities=21% Similarity=0.187 Sum_probs=127.8
Q ss_pred ccccEEEecCCCCCcC-CccccccccCcEEEcccCCcccc-ChhhcCCCCCcEEEccCCCCCccch-hhccccccceeee
Q 045386 528 KHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRL-PSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNF 604 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~l-P~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l 604 (706)
+.+++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..+.++++|++|+|++|.+..+|. .|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5799999999999977 56799999999999999999977 6789999999999999999999987 4789999999999
Q ss_pred cCc----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCC
Q 045386 605 GSI----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 605 ~~~----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
... ..|..+. .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|++++|.
T Consensus 112 s~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 112 SENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp TTSCCCEECTTTTT-TCTTCCEEEECCTTCCEE-CTTSSTTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEEEEESCC
T ss_pred CCCccccCChhHcc-ccccCCEEECCCCcccee-ChhhccCCCCCCEEECCCCc--CcccChhHhcccCCCcEEeCCCCc
Confidence 332 2455688 999999999877665443 56788999999999999986 445556679999999999999965
Q ss_pred C
Q 045386 681 K 681 (706)
Q Consensus 681 ~ 681 (706)
.
T Consensus 188 i 188 (477)
T 2id5_A 188 I 188 (477)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.49 E-value=7.3e-14 Score=148.59 Aligned_cols=128 Identities=19% Similarity=0.208 Sum_probs=60.4
Q ss_pred ccCcccccEEEecCCCCCcCCcc-ccccccCcEEEcccCCccccCh--hhcCCCCCcEEEccCC-CCCccc-hhhccccc
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPG-LENLFLLKYLKLNIPSLKRLPS--LLCTLLNLETLEMPSS-YIDQSP-EDIWMMQK 598 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~Lr~L~Ls~~~l~~lP~--~i~~L~~L~~L~L~~~-~~~~lP-~~l~~L~~ 598 (706)
|.++++|++|+|++|.++.+|.. ++.+++|++|++++|.++.+|. .+.++++|++|++++| .+..+| ..+.++++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 44555555555555555544433 4555555555555555555554 3455555555555555 344443 24555555
Q ss_pred cceeeecC--c--cCCcchhcCCccCcccccccccccCCCCch-hcCCCCCCCeEEEEccC
Q 045386 599 LMHLNFGS--I--TLPAPPKNYSSSLKNLIFISALNPSSCTPD-ILDRLPSVRTLRISGDL 654 (706)
Q Consensus 599 L~~L~l~~--~--~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~-~l~~L~~L~~L~l~~~~ 654 (706)
|++|++.. . ..|..++ .+++|++|++..+.... .+. .++.+++|+.|++++|.
T Consensus 176 L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCB
T ss_pred CCEEECCCCCcCccCHHHHh-ccccCCeecCCCCcccc--chhhhhhhcccccEEECCCCc
Confidence 55555511 1 1244444 55555555544333211 111 12334555555555543
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.49 E-value=1.5e-13 Score=145.56 Aligned_cols=168 Identities=18% Similarity=0.173 Sum_probs=101.3
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
+.++++|++|++++|.++.+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.....+..+..+++|++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 161 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEE
T ss_pred hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEE
Confidence 566666666676666666554 46666667777776666666654 6666667777776663322333466666777776
Q ss_pred ecCc---cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCC
Q 045386 604 FGSI---TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 604 l~~~---~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
+... .++ .+. .+++|++|++..+... ....+..+++|+.|+++++. .. .++. +..+++|+.|++++|.
T Consensus 162 l~~~~~~~~~-~~~-~l~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~--l~-~~~~-~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 162 VTESKVKDVT-PIA-NLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQ--IT-DITP-VANMTRLNSLKIGNNK 232 (347)
T ss_dssp CCSSCCCCCG-GGG-GCTTCSEEECTTSCCC---CCGGGGGCTTCCEEECCSSC--CC-CCGG-GGGCTTCCEEECCSSC
T ss_pred ecCCCcCCch-hhc-cCCCCCEEEccCCccc---ccccccCCCccceeecccCC--CC-CCch-hhcCCcCCEEEccCCc
Confidence 6222 222 255 6666777766555432 22236667777777777664 22 2222 6677888888888854
Q ss_pred CCCccccCCcccccccceEEecccC
Q 045386 681 KPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 681 ~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
. ..++.....++|++|+|++|+
T Consensus 233 l---~~~~~~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 233 I---TDLSPLANLSQLTWLEIGTNQ 254 (347)
T ss_dssp C---CCCGGGTTCTTCCEEECCSSC
T ss_pred c---CCCcchhcCCCCCEEECCCCc
Confidence 3 222222334789999988875
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.49 E-value=1.5e-13 Score=145.58 Aligned_cols=172 Identities=15% Similarity=0.182 Sum_probs=138.0
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
..+..+++|+.|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+|. +..+++|++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 247 (347)
T 4fmz_A 171 TPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTW 247 (347)
T ss_dssp GGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred hhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCE
Confidence 447788899999999998887766 8888999999999998888775 8889999999999999988887 889999999
Q ss_pred eeec--CccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 602 LNFG--SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 602 L~l~--~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
|++. ...-.+.+. .+++|++|++..+... ....+..+++|+.|++++|. .....+..+..+++|+.|++++|
T Consensus 248 L~l~~n~l~~~~~~~-~l~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 248 LEIGTNQISDINAVK-DLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQ--LGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp EECCSSCCCCCGGGT-TCTTCCEEECCSSCCC---CCGGGGGCTTCSEEECCSSC--CCGGGHHHHHTCTTCSEEECCSS
T ss_pred EECCCCccCCChhHh-cCCCcCEEEccCCccC---CChhhcCCCCCCEEECcCCc--CCCcChhHhhccccCCEEEccCC
Confidence 9993 222234677 8899999998776543 23568899999999999987 66677888999999999999996
Q ss_pred CCCCccccCCcccccccceEEecccC
Q 045386 680 SKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 680 ~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
.. ....+....++|++|++++|.
T Consensus 322 ~l---~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 322 HI---TDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp SC---CCCGGGGGCTTCSEESSSCC-
T ss_pred cc---ccccChhhhhccceeehhhhc
Confidence 54 333222334799999999985
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.49 E-value=5.2e-14 Score=161.05 Aligned_cols=176 Identities=18% Similarity=0.088 Sum_probs=129.2
Q ss_pred cccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccCh--hhcCCCCCcEEEccCCCCCc-cchhhcccccc
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPS--LLCTLLNLETLEMPSSYIDQ-SPEDIWMMQKL 599 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~--~i~~L~~L~~L~L~~~~~~~-lP~~l~~L~~L 599 (706)
.+..++.|+.|++++|.++.+|..+..+++|++|++++|.+..+++ .+.++++|++|++++|.+.. .|..+..+++|
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 3566777888888887777777777778888888888887776543 57778888888888886654 45677888888
Q ss_pred ceeeecCc-----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEE
Q 045386 600 MHLNFGSI-----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECL 674 (706)
Q Consensus 600 ~~L~l~~~-----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 674 (706)
++|++... .+|..++ .+++|++|++..+..... .+..++.+++|+.|++++|. ..+..|..+..+++|+.|
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFA-NTTNLTFLDLSKCQLEQI-SWGVFDTLHRLQLLNMSHNN--LLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC--CSCEEGGGTTTCTTCCEE
T ss_pred CEEECCCCcCCCcchHHhhc-cCCCCCEEECCCCcCCcc-ChhhhcccccCCEEECCCCc--CCCcCHHHccCCCcCCEE
Confidence 88888222 2566777 888888888777765443 56678888888888888886 556668888888899999
Q ss_pred EEeeCCCCCccccCC--cccccccceEEecccC
Q 045386 675 KLVNESKPSWMVLSE--YQFPPSLIQLSLSIVR 705 (706)
Q Consensus 675 ~L~~~~~~~l~~l~~--~~~p~~L~~L~L~~n~ 705 (706)
+|++|.. ..++. ..+|++|+.|+|++|.
T Consensus 527 ~l~~N~l---~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 527 DCSFNRI---ETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ECTTSCC---CCEESCGGGSCTTCCEEECCSCC
T ss_pred ECCCCcC---cccCHhHhhhcccCcEEEccCCC
Confidence 9988653 33321 2334579999999885
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.49 E-value=4.7e-14 Score=159.33 Aligned_cols=198 Identities=15% Similarity=0.075 Sum_probs=145.4
Q ss_pred CCceeEEEEeccCCCCceEEeeCCCccccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccChh-hcCCC
Q 045386 497 FANVKRYIILEHLTEGDHLAVIDCENFCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPSL-LCTLL 574 (706)
Q Consensus 497 ~~~~r~ls~~~~~~~~~~ll~f~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~ 574 (706)
+..++++.+..+.... +. ...|.++++|++|+|++|.++.++ ..++.+++|++|+|++|.+..+|+. +++++
T Consensus 25 ~~~L~~L~Ls~n~l~~----~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 25 TAAMKSLDLSFNKITY----IG--HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CTTCCEEECCSSCCCE----EC--SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCccEEECcCCccCc----cC--hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 3467777766541110 00 045788899999999999988664 6788999999999999999888776 89999
Q ss_pred CCcEEEccCCCCCc--cchhhccccccceeeecC----ccCC-cchhcCCccCcccccccccccCCCCchhcCCCCCCCe
Q 045386 575 NLETLEMPSSYIDQ--SPEDIWMMQKLMHLNFGS----ITLP-APPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRT 647 (706)
Q Consensus 575 ~L~~L~L~~~~~~~--lP~~l~~L~~L~~L~l~~----~~lp-~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 647 (706)
+|++|++++|.+.. .|..++++++|++|++.. ..+| ..+. .+++|++|++..+..... .+..++.+++|+.
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~ 176 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-GLTSLNELEIKALSLRNY-QSQSLKSIRDIHH 176 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEE-CTTTTTTCSEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhh-cccccCeeeccCCccccc-ChhhhhccccCce
Confidence 99999999998874 466888999999999922 2455 4677 889999998877765444 6778889999999
Q ss_pred EEEEccCCcCccchHHh-cCCCCCCcEEEEeeCCCCCcc--ccCCcccccccceEEecccC
Q 045386 648 LRISGDLSYYQSGVSKS-LCELHKLECLKLVNESKPSWM--VLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 648 L~l~~~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~l~--~l~~~~~p~~L~~L~L~~n~ 705 (706)
|+++.+. ...+|.. +..+++|+.|++++|....+. ..+....+++|+.|++++|.
T Consensus 177 L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 177 LTLHLSE---SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp EEEECSB---STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred EecccCc---ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 9998875 3344444 356889999999996542211 11222335789999999874
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.48 E-value=4.9e-13 Score=140.89 Aligned_cols=175 Identities=17% Similarity=0.112 Sum_probs=126.1
Q ss_pred ccccCcccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch-hhcccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQKL 599 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L 599 (706)
..|.++++|++|+|++|.++.+ |..++.+++|++|++++|.++.+|..+. ++|++|++++|.+..+|. .+..+++|
T Consensus 72 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 4578889999999999998865 6778889999999999999988887766 789999999998888876 47889999
Q ss_pred ceeeecCc------cCCcchhcCC--------------------ccCcccccccccccCCCCchhcCCCCCCCeEEEEcc
Q 045386 600 MHLNFGSI------TLPAPPKNYS--------------------SSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGD 653 (706)
Q Consensus 600 ~~L~l~~~------~lp~~i~~~l--------------------~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 653 (706)
++|++... ..|..+. .+ ++|++|++..+..... .+..+..+++|+.|++++|
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~-~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFD-GLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSC-SCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC-CTTSSTTCTTCSCCBCCSS
T ss_pred CEEECCCCccccCCCCccccc-CCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCC
Confidence 99988322 2233344 43 2344444433333222 4466888889999999888
Q ss_pred CCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCC-cccccccceEEecccC
Q 045386 654 LSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSE-YQFPPSLIQLSLSIVR 705 (706)
Q Consensus 654 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~-~~~p~~L~~L~L~~n~ 705 (706)
. .....+..+..+++|+.|++++|.. ..++. ..-.++|+.|+|++|+
T Consensus 228 ~--l~~~~~~~~~~l~~L~~L~L~~N~l---~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 228 Q--IRMIENGSLSFLPTLRELHLDNNKL---SRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp C--CCCCCTTGGGGCTTCCEEECCSSCC---CBCCTTGGGCTTCCEEECCSSC
T ss_pred c--CCcCChhHhhCCCCCCEEECCCCcC---eecChhhhcCccCCEEECCCCC
Confidence 6 4444555788889999999988543 33321 1224689999999885
No 53
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=6.7e-14 Score=140.19 Aligned_cols=193 Identities=11% Similarity=0.068 Sum_probs=141.9
Q ss_pred CCCceeEEEEeccCCC-CceEEeeCCCccccCcccccEEEecCCC-CCcCCc-cccccccCcEEEccc-CCccccCh-hh
Q 045386 496 PFANVKRYIILEHLTE-GDHLAVIDCENFCKKFKHLRVLNFGSAV-LDQFPP-GLENLFLLKYLKLNI-PSLKRLPS-LL 570 (706)
Q Consensus 496 ~~~~~r~ls~~~~~~~-~~~ll~f~~~~~~~~l~~L~~L~L~~~~-l~~lp~-~~~~L~~Lr~L~Ls~-~~l~~lP~-~i 570 (706)
.+..++.+.+..+... .+ ...|.++++|+.|++++|. ++.+|. .+..+++|++|++++ |.++.+|. .+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~-------~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIP-------SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CCTTCCEEEEESCCCSEEC-------TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CCCcccEEEEeCCcceEEC-------HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 3456777776654111 00 0457889999999999997 888765 688999999999998 89998885 57
Q ss_pred cCCCCCcEEEccCCCCCccchhhccccccc---eeeec---Cc-cCCcc-hhcCCccCc-ccccccccccCCCCchhcCC
Q 045386 571 CTLLNLETLEMPSSYIDQSPEDIWMMQKLM---HLNFG---SI-TLPAP-PKNYSSSLK-NLIFISALNPSSCTPDILDR 641 (706)
Q Consensus 571 ~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~---~L~l~---~~-~lp~~-i~~~l~~L~-~L~~~~~~~~~~~~~~~l~~ 641 (706)
.++++|++|++++|.+..+|. +..+++|+ +|++. .. .+|.. +. .+++|+ +|++..+.... .+.....
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~-~l~~L~~~L~l~~n~l~~--i~~~~~~ 177 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ-GLCNETLTLKLYNNGFTS--VQGYAFN 177 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT-TTBSSEEEEECCSCCCCE--ECTTTTT
T ss_pred CCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCccccc-chhcceeEEEcCCCCCcc--cCHhhcC
Confidence 899999999999999999997 88888888 99883 22 45554 77 889999 99877665432 3333333
Q ss_pred CCCCCeEEEEccCCcCccch-HHhcCCC-CCCcEEEEeeCCCCCccccCCcccccccceEEecccC
Q 045386 642 LPSVRTLRISGDLSYYQSGV-SKSLCEL-HKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 642 L~~L~~L~l~~~~~~~~~~~-~~~l~~l-~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
.++|+.|++++|. ....+ +..+..+ ++|+.|++++| .+..++...+ ++|+.|++++|.
T Consensus 178 ~~~L~~L~L~~n~--~l~~i~~~~~~~l~~~L~~L~l~~N---~l~~l~~~~~-~~L~~L~l~~~~ 237 (239)
T 2xwt_C 178 GTKLDAVYLNKNK--YLTVIDKDAFGGVYSGPSLLDVSQT---SVTALPSKGL-EHLKELIARNTW 237 (239)
T ss_dssp TCEEEEEECTTCT--TCCEECTTTTTTCSBCCSEEECTTC---CCCCCCCTTC-TTCSEEECTTC-
T ss_pred CCCCCEEEcCCCC--CcccCCHHHhhccccCCcEEECCCC---ccccCChhHh-ccCceeeccCcc
Confidence 3789999998873 23344 4567888 99999999984 4455544434 689999999874
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.47 E-value=2.1e-13 Score=150.82 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=48.7
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
+..+++|++|+|++|.++.+|. +..+++|++|++++|.+..+|. ++++++|++|++++|.+..+|. +.++++|++|+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLE 140 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEE
Confidence 4556666666666666665554 6666666666666666666554 6666666666666666666654 56666666666
Q ss_pred e
Q 045386 604 F 604 (706)
Q Consensus 604 l 604 (706)
+
T Consensus 141 l 141 (466)
T 1o6v_A 141 L 141 (466)
T ss_dssp E
T ss_pred C
Confidence 6
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=4e-14 Score=157.29 Aligned_cols=168 Identities=19% Similarity=0.128 Sum_probs=114.5
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
..|.++++|++|+|++|.++..++ ++.+++|++|+|++|.++.+|.. ++|++|++++|.+..+|.. .+++|++
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~~~~~--~l~~L~~ 124 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCS--RGQGKKN 124 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCCCEEEC--CCSSCEE
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCCCCCcc--ccCCCCE
Confidence 356677777777777777765444 77777777777777777766632 6777777777777776653 4678888
Q ss_pred eeecCc---c-CCcchhcCCccCcccccccccccCCCCchhcC-CCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEE
Q 045386 602 LNFGSI---T-LPAPPKNYSSSLKNLIFISALNPSSCTPDILD-RLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKL 676 (706)
Q Consensus 602 L~l~~~---~-lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~-~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L 676 (706)
|++... . .|..++ .+++|++|++..+..... .+..+. .+++|+.|++++|. . ..++ .+..+++|+.|+|
T Consensus 125 L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~--l-~~~~-~~~~l~~L~~L~L 198 (487)
T 3oja_A 125 IYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNF--I-YDVK-GQVVFAKLKTLDL 198 (487)
T ss_dssp EECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSC--C-CEEE-CCCCCTTCCEEEC
T ss_pred EECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCc--c-cccc-ccccCCCCCEEEC
Confidence 888322 2 344677 888888888877765443 455664 78889999998885 2 2333 3445888999999
Q ss_pred eeCCCCCccccCCc-ccccccceEEecccC
Q 045386 677 VNESKPSWMVLSEY-QFPPSLIQLSLSIVR 705 (706)
Q Consensus 677 ~~~~~~~l~~l~~~-~~p~~L~~L~L~~n~ 705 (706)
++|.. ..+++. .-.++|+.|+|++|+
T Consensus 199 s~N~l---~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 199 SSNKL---AFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CSSCC---CEECGGGGGGTTCSEEECTTSC
T ss_pred CCCCC---CCCCHhHcCCCCccEEEecCCc
Confidence 88543 333211 124689999999885
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=7.9e-14 Score=139.65 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=133.6
Q ss_pred ccccEEEecCCCCCcCCc-cccccccCcEEEcccCC-ccccCh-hhcCCCCCcEEEccC-CCCCccch-hhcccccccee
Q 045386 528 KHLRVLNFGSAVLDQFPP-GLENLFLLKYLKLNIPS-LKRLPS-LLCTLLNLETLEMPS-SYIDQSPE-DIWMMQKLMHL 602 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~-~~~~L~~Lr~L~Ls~~~-l~~lP~-~i~~L~~L~~L~L~~-~~~~~lP~-~l~~L~~L~~L 602 (706)
..|+.|++++|.++.+|. .+..+++|++|++++|. ++.+|. .+.++++|++|++++ |.+..+|. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 479999999999998875 68899999999999997 999987 578999999999998 89999885 68899999999
Q ss_pred ee--c-CccCCcchhcCCccCc---ccccccccccCCCCchhcCCCCCCC-eEEEEccCCcCccchHHhcCCCCCCcEEE
Q 045386 603 NF--G-SITLPAPPKNYSSSLK---NLIFISALNPSSCTPDILDRLPSVR-TLRISGDLSYYQSGVSKSLCELHKLECLK 675 (706)
Q Consensus 603 ~l--~-~~~lp~~i~~~l~~L~---~L~~~~~~~~~~~~~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 675 (706)
++ + ...+|. ++ .+++|+ +|++..+.......+..++.+++|+ .|+++++. ...+|......++|+.|+
T Consensus 111 ~l~~n~l~~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~---l~~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG---FTSVQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEECCCSCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC---CCEECTTTTTTCEEEEEE
T ss_pred eCCCCCCccccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC---CcccCHhhcCCCCCCEEE
Confidence 99 2 236775 77 888888 8887776222222445688999999 99999885 335555444448999999
Q ss_pred EeeCCCCCccccCCccc--c-cccceEEecccC
Q 045386 676 LVNESKPSWMVLSEYQF--P-PSLIQLSLSIVR 705 (706)
Q Consensus 676 L~~~~~~~l~~l~~~~~--p-~~L~~L~L~~n~ 705 (706)
+++|. .+..++...+ . ++|+.|+|++|+
T Consensus 186 L~~n~--~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 186 LNKNK--YLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp CTTCT--TCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred cCCCC--CcccCCHHHhhccccCCcEEECCCCc
Confidence 99963 2344432223 3 689999999985
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=1.9e-13 Score=155.96 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=50.7
Q ss_pred ccccCcccccEEEecCCCCCcCCcc-ccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPG-LENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSP 590 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP 590 (706)
..|.++++|++|+|++|.++.+|.. ++.+++|++|+|++|.+..+|+ .++++++|++|++++|.+..+|
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 3467778888888888887777765 4778888888888887776654 4777788888888777666554
No 58
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=6.5e-14 Score=164.63 Aligned_cols=150 Identities=15% Similarity=0.112 Sum_probs=114.9
Q ss_pred cCcccccEEEecCCCCC-cCCccccccccCcEEEcccCC-cc--ccChhhcCCC-------CCcEEEccCCCCCccch--
Q 045386 525 KKFKHLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIPS-LK--RLPSLLCTLL-------NLETLEMPSSYIDQSPE-- 591 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~~-l~--~lP~~i~~L~-------~L~~L~L~~~~~~~lP~-- 591 (706)
.++++|++|+|++|.+. .+|..++++++|++|+|++|. ++ .+|..++++. +|++|+|++|.+..+|.
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 37888888888888855 778888888888888888887 76 4887776665 88888888888888888
Q ss_pred hhccccccceeeec---CccCCcchhcCCccCcccccccccccCCCCchhcCCCCC-CCeEEEEccCCcCccchHHhcCC
Q 045386 592 DIWMMQKLMHLNFG---SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPS-VRTLRISGDLSYYQSGVSKSLCE 667 (706)
Q Consensus 592 ~l~~L~~L~~L~l~---~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~l~~ 667 (706)
.++++++|++|+++ ...+| .++ .+++|+.|++..+... . .+..+..+++ |+.|++++|. ...+|..+..
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~-~L~~L~~L~Ls~N~l~-~-lp~~l~~l~~~L~~L~Ls~N~---L~~lp~~~~~ 640 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFG-TNVKLTDLKLDYNQIE-E-IPEDFCAFTDQVEGLGFSHNK---LKYIPNIFNA 640 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCC-TTSEESEEECCSSCCS-C-CCTTSCEECTTCCEEECCSSC---CCSCCSCCCT
T ss_pred hhhcCCCCCEEECCCCCcccch-hhc-CCCcceEEECcCCccc-c-chHHHhhccccCCEEECcCCC---CCcCchhhhc
Confidence 88888888888882 22677 777 8888888887776654 3 6777888888 8888888875 3366666665
Q ss_pred CCC--CcEEEEeeCCC
Q 045386 668 LHK--LECLKLVNESK 681 (706)
Q Consensus 668 l~~--L~~L~L~~~~~ 681 (706)
++. |+.|++++|..
T Consensus 641 ~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKI 656 (876)
T ss_dssp TCSSCEEEEECCSSCT
T ss_pred cccCCCCEEECcCCcC
Confidence 543 77788777543
No 59
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.46 E-value=3.5e-13 Score=148.43 Aligned_cols=107 Identities=15% Similarity=0.042 Sum_probs=58.1
Q ss_pred hhccccccceeeecCc---c-CCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCC
Q 045386 592 DIWMMQKLMHLNFGSI---T-LPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCE 667 (706)
Q Consensus 592 ~l~~L~~L~~L~l~~~---~-lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~ 667 (706)
.++.+++|++|++... . .|..++ .+++|++|++..+..... .+..++.+++|+.|++++|. .....|..+..
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~ 369 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNH--IRALGDQSFLG 369 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSC--CCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCc--ccccChhhccc
Confidence 4455555555555211 1 233455 556666666555443222 34556666666666666664 44444566666
Q ss_pred CCCCcEEEEeeCCCCCccccCCcc--cccccceEEecccC
Q 045386 668 LHKLECLKLVNESKPSWMVLSEYQ--FPPSLIQLSLSIVR 705 (706)
Q Consensus 668 l~~L~~L~L~~~~~~~l~~l~~~~--~p~~L~~L~L~~n~ 705 (706)
+++|+.|++++|. +..++... -.++|+.|+|++|+
T Consensus 370 l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 370 LPNLKELALDTNQ---LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTCCEEECCSSC---CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccEEECCCCc---cccCCHhHhccCCcccEEEccCCC
Confidence 6777777776643 22222211 23678888888774
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.46 E-value=1.9e-13 Score=156.27 Aligned_cols=179 Identities=21% Similarity=0.188 Sum_probs=86.8
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCcccc-ChhhcCCCCCcEEE----------------------
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRL-PSLLCTLLNLETLE---------------------- 580 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~l-P~~i~~L~~L~~L~---------------------- 580 (706)
|.++++|+.|++++|.++.+|..++.+++|++|++++|.+..+ |..++++++|++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 4445555555555555555555555555555555555555443 22344444444444
Q ss_pred ---ccCCCCCcc---chhhccccccceeeecCc----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEE
Q 045386 581 ---MPSSYIDQS---PEDIWMMQKLMHLNFGSI----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRI 650 (706)
Q Consensus 581 ---L~~~~~~~l---P~~l~~L~~L~~L~l~~~----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l 650 (706)
+++|.+..+ |..++.+++|++|++... ..|..+. .+++|++|++..+.......+..++.+++|+.|++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 444444333 334445555555555111 1233344 55555555544443322212223555666666666
Q ss_pred EccCCcCccchHHhcCCCCCCcEEEEeeCCCCC--ccccCCcccccccceEEecccC
Q 045386 651 SGDLSYYQSGVSKSLCELHKLECLKLVNESKPS--WMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 651 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
++|. .....|..+..+++|+.|++++|.... +.........++|+.|+|++|+
T Consensus 433 ~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 433 SHSL--LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TTCC--CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCCc--cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 6554 344445556666666666666643210 0000111223678888887774
No 61
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=2.3e-13 Score=140.58 Aligned_cols=168 Identities=19% Similarity=0.147 Sum_probs=135.3
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
+..+++|+.|++++|.++.+|. +..+++|++|++++|.++.+|. ++++++|++|++++|.+..+|. +..+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 4578889999999999988864 8889999999999999999887 9999999999999999988775 89999999999
Q ss_pred e--cCccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCC
Q 045386 604 F--GSITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESK 681 (706)
Q Consensus 604 l--~~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 681 (706)
+ +...-.+.+. .+++|+.|++..+... ....++.+++|+.|++++|. . ..++. +..+++|+.|++++|..
T Consensus 119 L~~n~i~~~~~l~-~l~~L~~L~l~~n~l~---~~~~l~~l~~L~~L~L~~N~--l-~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 119 LEHNGISDINGLV-HLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQ--I-SDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CTTSCCCCCGGGG-GCTTCCEEECCSSCCC---CCGGGGGCTTCSEEECCSSC--C-CCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCCCcCCCChhhc-CCCCCCEEEccCCcCC---cchhhccCCCCCEEEccCCc--c-ccchh-hcCCCccCEEECCCCcC
Confidence 9 3333335688 8999999998776553 23678999999999999885 3 33333 88999999999999654
Q ss_pred CCccccCCcccccccceEEecccC
Q 045386 682 PSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 682 ~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
..++...-.++|+.|+|++|+
T Consensus 191 ---~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 191 ---SDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ---CBCGGGTTCTTCSEEEEEEEE
T ss_pred ---CCChhhccCCCCCEEECcCCc
Confidence 333322334789999999884
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.46 E-value=7e-14 Score=159.92 Aligned_cols=178 Identities=16% Similarity=0.133 Sum_probs=143.9
Q ss_pred ccccCcccccEEEecCCCCCcC---CccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch--hhccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQF---PPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE--DIWMM 596 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~l---p~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~--~l~~L 596 (706)
..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+..+|..+..+++|++|++++|.+..++. .+..+
T Consensus 344 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 3456888999999999998754 788899999999999999999999889999999999999997776654 78899
Q ss_pred cccceeeecCc----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCc
Q 045386 597 QKLMHLNFGSI----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLE 672 (706)
Q Consensus 597 ~~L~~L~l~~~----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 672 (706)
++|++|++... ..|..++ .+++|++|++..+.......+..++.+++|+.|++++|. ..+..|..+..+++|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ--LEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCC
T ss_pred ccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc--CCccChhhhcccccCC
Confidence 99999999322 4566788 999999999887766442256678999999999999986 6667778899999999
Q ss_pred EEEEeeCCCCCccccCCccc--ccccceEEecccC
Q 045386 673 CLKLVNESKPSWMVLSEYQF--PPSLIQLSLSIVR 705 (706)
Q Consensus 673 ~L~L~~~~~~~l~~l~~~~~--p~~L~~L~L~~n~ 705 (706)
.|++++|.. ..+.+..+ .++|+.|+|++|+
T Consensus 501 ~L~Ls~N~l---~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 501 LLNMSHNNL---LFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EEECCSSCC---SCEEGGGTTTCTTCCEEECTTSC
T ss_pred EEECCCCcC---CCcCHHHccCCCcCCEEECCCCc
Confidence 999999654 22211112 3689999999986
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=3.7e-13 Score=148.82 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=86.7
Q ss_pred cccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhcccccccee
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHL 602 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L 602 (706)
.+.++++|++|++++|.++.++. ++++++|++|++++|.++.+|. +.++++|++|++++|.+..+|. ++.+++|++|
T Consensus 85 ~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 161 (466)
T 1o6v_A 85 PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQL 161 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEE
T ss_pred hhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEe
Confidence 37788889999999888887766 8888899999999888888875 8888889999998887777763 6777777777
Q ss_pred ee-cCccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 603 NF-GSITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 603 ~l-~~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
++ +...-...++ .+++|+.|++..+... ....+..+++|+.|+++++.
T Consensus 162 ~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~---~~~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 162 SFGNQVTDLKPLA-NLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp EEEESCCCCGGGT-TCTTCCEEECCSSCCC---CCGGGGGCTTCSEEECCSSC
T ss_pred ecCCcccCchhhc-cCCCCCEEECcCCcCC---CChhhccCCCCCEEEecCCc
Confidence 76 2222122355 6666666665554431 22335555555555555553
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.45 E-value=6.1e-14 Score=146.89 Aligned_cols=167 Identities=20% Similarity=0.157 Sum_probs=94.3
Q ss_pred cccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhcccccccee
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHL 602 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L 602 (706)
.|.++++|++|+|++|.++..++ +..+++|++|++++|.++.+| .+++|++|++++|.+..+|.. .+++|++|
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L 125 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNI 125 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEE
T ss_pred HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEE
Confidence 34455555555555555543332 555555555555555555444 124555555555555555432 35667777
Q ss_pred eecCc---cCC-cchhcCCccCcccccccccccCCCCchhc-CCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEe
Q 045386 603 NFGSI---TLP-APPKNYSSSLKNLIFISALNPSSCTPDIL-DRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLV 677 (706)
Q Consensus 603 ~l~~~---~lp-~~i~~~l~~L~~L~~~~~~~~~~~~~~~l-~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 677 (706)
++... .++ ..++ .+++|++|++..+..... .+..+ +.+++|+.|++++|. ...++ ....+++|+.|+++
T Consensus 126 ~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~---l~~~~-~~~~l~~L~~L~Ls 199 (317)
T 3o53_A 126 YLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNF---IYDVK-GQVVFAKLKTLDLS 199 (317)
T ss_dssp ECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSC---CCEEE-CCCCCTTCCEEECC
T ss_pred ECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCc---Ccccc-cccccccCCEEECC
Confidence 77222 232 3466 677788887766654332 34444 467788888888774 22332 23347788888888
Q ss_pred eCCCCCccccCC-cccccccceEEecccC
Q 045386 678 NESKPSWMVLSE-YQFPPSLIQLSLSIVR 705 (706)
Q Consensus 678 ~~~~~~l~~l~~-~~~p~~L~~L~L~~n~ 705 (706)
+|.. ..++. ..-.++|+.|+|++|+
T Consensus 200 ~N~l---~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 200 SNKL---AFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp SSCC---CEECGGGGGGTTCSEEECTTSC
T ss_pred CCcC---CcchhhhcccCcccEEECcCCc
Confidence 8543 22221 1124688899988885
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.45 E-value=2.7e-13 Score=153.01 Aligned_cols=174 Identities=16% Similarity=0.109 Sum_probs=128.2
Q ss_pred ccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccC-hhhcCCCCCcEEEccCCCCCccchh-hccccccceeee
Q 045386 528 KHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLP-SLLCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHLNF 604 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP-~~i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L~l 604 (706)
+.|++|+|++|.++.+ |..+..+++|++|+|++|.+..+| ..++++++|++|++++|.+..+|.. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5788888888888865 567888888999999888888776 4688888899999988888887764 888888888888
Q ss_pred cC--c---cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 605 GS--I---TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 605 ~~--~---~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
+. . .+|..++ .+++|++|++..+.......+..++.+++|+.|+++++. ..+..|..+..+++|+.|+++++
T Consensus 106 s~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 106 MGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS--LRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc--ccccChhhhhccccCceEecccC
Confidence 22 2 3466778 888888888877653333234568888888888888886 66667788888888888888885
Q ss_pred CCCCccccCCcccccccceEEecccC
Q 045386 680 SKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 680 ~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
....+.... ....++|++|+|++|+
T Consensus 183 ~~~~~~~~~-~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 183 ESAFLLEIF-ADILSSVRYLELRDTN 207 (549)
T ss_dssp BSTTHHHHH-HHSTTTBSEEEEESCB
T ss_pred cccccchhh-HhhcccccEEEccCCc
Confidence 431111100 0113688888888875
No 66
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=1.3e-13 Score=133.87 Aligned_cols=145 Identities=15% Similarity=0.161 Sum_probs=91.4
Q ss_pred cCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCc-cchhhccccccceee
Q 045386 525 KKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQ-SPEDIWMMQKLMHLN 603 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~-lP~~l~~L~~L~~L~ 603 (706)
..++.|+.|++++|.++.+| .+..+++|++|++++|.+..+| .+..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 56778888888888888777 6788888888888888776665 67788888888888887764 566677777777777
Q ss_pred ecCc----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 604 FGSI----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 604 l~~~----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
++.. ..|..++ .+++|++|++..+..... ...++.+++|+.|++++|. ...++ .+..+++|+.|++++
T Consensus 119 Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~--~~~l~~l~~L~~L~l~~n~---i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 119 ISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDG---VHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCC--CGGGGGCSSCCEEECTTBC---CCCCT-TGGGCSSCCEEEECB
T ss_pred ecCCccCcHhHHHHh-hCCCCCEEEccCCCCccc--cHhhcCCCCCCEEECCCCC---CcChH-HhccCCCCCEEEeeC
Confidence 7322 1244455 555555555554431111 2245555555555555543 11222 444455555555555
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.45 E-value=5.1e-13 Score=147.01 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=80.2
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++.+++|++|++++|.+..+| ++.+++|++|+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELD 154 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE
T ss_pred cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEE
Confidence 344445555555555544443 444555555555555554443 445555555555555444443 44455555555
Q ss_pred ecCc-cC-CcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCC
Q 045386 604 FGSI-TL-PAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESK 681 (706)
Q Consensus 604 l~~~-~l-p~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 681 (706)
+... .+ .-.++ .+++|++|++..+.... .+ ++.+++|+.|++++|. . ..+ .++.+++|+.|++++|..
T Consensus 155 l~~n~~~~~~~~~-~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~--l-~~~--~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 155 CHLNKKITKLDVT-PQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNN--I-TKL--DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CTTCSCCCCCCCT-TCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSC--C-SCC--CCTTCTTCSEEECCSSCC
T ss_pred CCCCCcccccccc-cCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCc--C-Cee--ccccCCCCCEEECcCCcc
Confidence 5111 00 00244 55555555554443321 11 5556666666666553 1 112 356666777777766433
Q ss_pred CCccccCCcccccccceEEecccC
Q 045386 682 PSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 682 ~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
..++ ....++|+.|+|++|+
T Consensus 225 ---~~ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 225 ---TEID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp ---SCCC-CTTCTTCSEEECCSSC
T ss_pred ---cccC-ccccCCCCEEEeeCCc
Confidence 2232 1223678888888774
No 68
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=4.8e-13 Score=135.01 Aligned_cols=130 Identities=22% Similarity=0.255 Sum_probs=68.0
Q ss_pred cccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccchh-hcccccc
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPED-IWMMQKL 599 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L 599 (706)
.|.++++|++|+|++|.++.++ ..+..+++|++|+|++|.++.+|.. +..+++|++|+|++|.+..+|.. +..+++|
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 3455555666666665555443 2355555666666666655555433 35555666666666655555543 3555566
Q ss_pred ceeeec---CccCCc-chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 600 MHLNFG---SITLPA-PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 600 ~~L~l~---~~~lp~-~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
++|+++ ...+|. .++ .+++|++|++..+..... .+..+..+++|+.|++++|.
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFD-KLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred cEEECcCCcCCccCHHHcC-cCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCc
Confidence 666551 113333 244 555555555554443322 33345555556666555554
No 69
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=2.1e-13 Score=138.61 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=119.1
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
..+..+++|++|++++|.++.+| .+..+++|++|+|++|.++.+|. +.++++|++|++++|.+..+|.... ++|++
T Consensus 35 ~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 35 VSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp ECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred cchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 34677889999999999999887 78899999999999999999887 8999999999999999988886433 89999
Q ss_pred eee--cCccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 602 LNF--GSITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 602 L~l--~~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
|++ +...-.+.+. .+++|+.|++..+.... ...++.+++|+.|++++|. ... + ..+..+++|+.|++++|
T Consensus 111 L~L~~N~l~~~~~l~-~l~~L~~L~Ls~N~i~~---~~~l~~l~~L~~L~L~~N~--i~~-~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 111 LFLDNNELRDTDSLI-HLKNLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNE--ITN-T-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp EECCSSCCSBSGGGT-TCTTCCEEECTTSCCCB---CGGGGGCTTCCEEECTTSC--CCB-C-TTSTTCCCCCEEEEEEE
T ss_pred EEccCCccCCChhhc-CcccccEEECCCCcCCC---ChHHccCCCCCEEECCCCc--Ccc-h-HHhccCCCCCEEeCCCC
Confidence 999 3333234688 89999999987766532 3478889999999999886 322 2 67888999999999986
Q ss_pred C
Q 045386 680 S 680 (706)
Q Consensus 680 ~ 680 (706)
.
T Consensus 183 ~ 183 (263)
T 1xeu_A 183 K 183 (263)
T ss_dssp E
T ss_pred c
Confidence 4
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.43 E-value=4.8e-13 Score=147.23 Aligned_cols=163 Identities=17% Similarity=0.071 Sum_probs=127.4
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
+.+..+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| ++++++|++|++++|.+..+| ++.+++|++
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 45778889999999999988876 888999999999999988886 888999999999999888886 888999999
Q ss_pred eeecCc---cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 602 LNFGSI---TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 602 L~l~~~---~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
|++... .+| ++ .+++|+.|++..+..... . .++.+++|+.|++++|. ...+| ++.+++|+.|++++
T Consensus 132 L~l~~N~l~~l~--l~-~l~~L~~L~l~~n~~~~~-~--~~~~l~~L~~L~ls~n~---l~~l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 132 LNCARNTLTEID--VS-HNTQLTELDCHLNKKITK-L--DVTPQTQLTTLDCSFNK---ITELD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp EECTTSCCSCCC--CT-TCTTCCEEECTTCSCCCC-C--CCTTCTTCCEEECCSSC---CCCCC--CTTCTTCCEEECCS
T ss_pred EECCCCccceec--cc-cCCcCCEEECCCCCcccc-c--ccccCCcCCEEECCCCc---cceec--cccCCCCCEEECcC
Confidence 998322 343 77 888899888877654333 2 57888999999999885 33344 78889999999998
Q ss_pred CCCCCccccCCcccccccceEEecccC
Q 045386 679 ESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 679 ~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
|.. ..++. .-.++|+.|+|++|+
T Consensus 201 N~l---~~~~l-~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 201 NNI---TKLDL-NQNIQLTFLDCSSNK 223 (457)
T ss_dssp SCC---SCCCC-TTCTTCSEEECCSSC
T ss_pred CcC---Ceecc-ccCCCCCEEECcCCc
Confidence 654 33322 223789999999985
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.43 E-value=8.4e-13 Score=149.56 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=48.8
Q ss_pred CCceeEEEEeccCC-CCceEEeeCCCccccCcccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccChhhcCCC
Q 045386 497 FANVKRYIILEHLT-EGDHLAVIDCENFCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPSLLCTLL 574 (706)
Q Consensus 497 ~~~~r~ls~~~~~~-~~~~ll~f~~~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~ 574 (706)
+..+++|.+..+.. ..+. ..|.++++|++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. .++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 121 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRM-------PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMA 121 (562)
T ss_dssp CTTCCEEECCSSCCCCCCG-------GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCT
T ss_pred CCCcCEEECCCCCccccCh-------hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccc
Confidence 35667777665411 1000 2344555555555555555533 34455555555555555555555544 455
Q ss_pred CCcEEEccCCCCCccc--hhhccccccceeee
Q 045386 575 NLETLEMPSSYIDQSP--EDIWMMQKLMHLNF 604 (706)
Q Consensus 575 ~L~~L~L~~~~~~~lP--~~l~~L~~L~~L~l 604 (706)
+|++|++++|.+..+| ..++++++|++|++
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEec
Confidence 5555555555444432 34555555555544
No 72
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=3.2e-13 Score=130.98 Aligned_cols=149 Identities=17% Similarity=0.101 Sum_probs=122.4
Q ss_pred ccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeecC--c--cCCcchhcCCccCcc
Q 045386 547 LENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFGS--I--TLPAPPKNYSSSLKN 622 (706)
Q Consensus 547 ~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~~--~--~lp~~i~~~l~~L~~ 622 (706)
...+++|++|++++|.+..+| .+..+++|++|++++|.+..+| .+..+++|++|+++. . ..|..++ .+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCE
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhc-CCCCCCE
Confidence 477899999999999999999 7999999999999999887776 788999999999933 3 2477888 9999999
Q ss_pred cccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCCcccccccceEEec
Q 045386 623 LIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLS 702 (706)
Q Consensus 623 L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~ 702 (706)
|++..+..... .+..++.+++|+.|++++|. ....++ .+..+++|+.|++++|.... ++...-.++|+.|+++
T Consensus 117 L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~--~i~~~~-~l~~l~~L~~L~l~~n~i~~---~~~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 117 LDISHSAHDDS-ILTKINTLPKVNSIDLSYNG--AITDIM-PLKTLPELKSLNIQFDGVHD---YRGIEDFPKLNQLYAF 189 (197)
T ss_dssp EECCSSBCBGG-GHHHHTTCSSCCEEECCSCT--BCCCCG-GGGGCSSCCEEECTTBCCCC---CTTGGGCSSCCEEEEC
T ss_pred EEecCCccCcH-hHHHHhhCCCCCEEEccCCC--CccccH-hhcCCCCCCEEECCCCCCcC---hHHhccCCCCCEEEee
Confidence 99888766543 57889999999999999885 355565 68899999999999975433 2222234789999999
Q ss_pred ccC
Q 045386 703 IVR 705 (706)
Q Consensus 703 ~n~ 705 (706)
+|+
T Consensus 190 ~N~ 192 (197)
T 4ezg_A 190 SQT 192 (197)
T ss_dssp BC-
T ss_pred Ccc
Confidence 986
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=2.3e-13 Score=141.91 Aligned_cols=171 Identities=13% Similarity=-0.007 Sum_probs=129.1
Q ss_pred cCcccccEEEecCCCCCc-CC----ccccccccCcEEEcccCCccccC-hhhcCCCCCcEEEccCCCCCc---cch--hh
Q 045386 525 KKFKHLRVLNFGSAVLDQ-FP----PGLENLFLLKYLKLNIPSLKRLP-SLLCTLLNLETLEMPSSYIDQ---SPE--DI 593 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~-lp----~~~~~L~~Lr~L~Ls~~~l~~lP-~~i~~L~~L~~L~L~~~~~~~---lP~--~l 593 (706)
..+++|++|+|++|.++. .| ..+..+++|++|+|++|.+..+| ..++.+++|++|+|++|.+.. +|. .+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 788999999999999874 23 33567999999999999998776 467899999999999997653 443 34
Q ss_pred ccccccceeeecCccC---Ccc----hhcCCccCcccccccccccCCCCchhcCCC---CCCCeEEEEccCCcCccchHH
Q 045386 594 WMMQKLMHLNFGSITL---PAP----PKNYSSSLKNLIFISALNPSSCTPDILDRL---PSVRTLRISGDLSYYQSGVSK 663 (706)
Q Consensus 594 ~~L~~L~~L~l~~~~l---p~~----i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L---~~L~~L~l~~~~~~~~~~~~~ 663 (706)
+.+++|++|+++...+ |.. ++ .+++|++|++..+..... .|..++.+ ++|+.|++++|. ...+|.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~-~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~L~~L~Ls~N~---l~~lp~ 268 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAA-AGVQPHSLDLSHNSLRAT-VNPSAPRCMWSSALNSLNLSFAG---LEQVPK 268 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHH-HTCCCSSEECTTSCCCCC-CCSCCSSCCCCTTCCCEECCSSC---CCSCCS
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHh-cCCCCCEEECCCCCCCcc-chhhHHhccCcCcCCEEECCCCC---CCchhh
Confidence 6899999999943333 332 45 778999999887776443 46666666 699999999885 336677
Q ss_pred hcCCCCCCcEEEEeeCCCCCccccCCcccccccceEEecccC
Q 045386 664 SLCELHKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 664 ~l~~l~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
.+. ++|+.|+|++|.. ..++.....++|+.|+|++|+
T Consensus 269 ~~~--~~L~~L~Ls~N~l---~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 269 GLP--AKLRVLDLSSNRL---NRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCC--SCCSCEECCSCCC---CSCCCTTSCCCCSCEECSSTT
T ss_pred hhc--CCCCEEECCCCcC---CCCchhhhCCCccEEECcCCC
Confidence 664 7999999999654 333322334799999999986
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=146.61 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=35.8
Q ss_pred cccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccc--cChhhcCCCCCcEEEccCCCC
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKR--LPSLLCTLLNLETLEMPSSYI 586 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~--lP~~i~~L~~L~~L~L~~~~~ 586 (706)
.|.++++|++|+|++|.++.+|.. .+++|++|+|++|.++. +|..++++++|++|++++|.+
T Consensus 64 ~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 64 VFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp GGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred HhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 455566666666666666555544 55666666666665553 345556666666665555543
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.42 E-value=5.6e-13 Score=152.43 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=121.1
Q ss_pred ccccCcc--cccEEEecCCCCCcCCcc-ccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCcc-chhhcccc
Q 045386 522 NFCKKFK--HLRVLNFGSAVLDQFPPG-LENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQS-PEDIWMMQ 597 (706)
Q Consensus 522 ~~~~~l~--~L~~L~L~~~~l~~lp~~-~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~l-P~~l~~L~ 597 (706)
..|.++. .|+.|++++|.++.++.. +..+++|++|++++|.++.+|..++.+++|++|++++|.+..+ |..+..++
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 3444444 799999999999977654 8999999999999999999999999999999999999988877 45889999
Q ss_pred ccceeeecCc----cCCcc-hhcCCccCcccccccccccCC-CCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCC
Q 045386 598 KLMHLNFGSI----TLPAP-PKNYSSSLKNLIFISALNPSS-CTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKL 671 (706)
Q Consensus 598 ~L~~L~l~~~----~lp~~-i~~~l~~L~~L~~~~~~~~~~-~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 671 (706)
+|++|++... .+|.. ++ .+++|++|++..+..... ..+..++.+++|+.|++++|. .....|..+..+++|
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLE-NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQL 402 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTT-TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTC
T ss_pred cCCEEECCCCCcccccchhhhh-ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccC
Confidence 9999999322 45554 77 888888888776654322 014567788888888888775 445556667777777
Q ss_pred cEEEEeeCC
Q 045386 672 ECLKLVNES 680 (706)
Q Consensus 672 ~~L~L~~~~ 680 (706)
+.|++++|.
T Consensus 403 ~~L~l~~n~ 411 (606)
T 3t6q_A 403 ELLDLAFTR 411 (606)
T ss_dssp SEEECTTCC
T ss_pred CeEECCCCc
Confidence 777776643
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=1.6e-12 Score=154.34 Aligned_cols=109 Identities=18% Similarity=0.291 Sum_probs=78.4
Q ss_pred CCCceeEEEEecc---------CCCCceE--EeeCCC--------ccccCcccccEEEecCCCCCcC-CccccccccCcE
Q 045386 496 PFANVKRYIILEH---------LTEGDHL--AVIDCE--------NFCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKY 555 (706)
Q Consensus 496 ~~~~~r~ls~~~~---------~~~~~~l--l~f~~~--------~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~ 555 (706)
.+..+++|.+..+ ...+++| +-+..+ ..|.++++|++|+|++|.++.+ |..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 5567888888765 1223333 222222 4578888888888888888754 777888888888
Q ss_pred EEcccCCccc-cChh--hcCCCCCcEEEccCCCCCccc--hhhccccccceeee
Q 045386 556 LKLNIPSLKR-LPSL--LCTLLNLETLEMPSSYIDQSP--EDIWMMQKLMHLNF 604 (706)
Q Consensus 556 L~Ls~~~l~~-lP~~--i~~L~~L~~L~L~~~~~~~lP--~~l~~L~~L~~L~l 604 (706)
|+|++|.+.. +|.. +++|++|++|+|++|.+..++ ..++++++|++|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 8888888774 5554 788888888888888776653 46788888888887
No 77
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.42 E-value=1.1e-13 Score=120.56 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=62.2
Q ss_pred chhhhHHHHhhhHHHHHHhhcccccchhHHHHHHHHHHHHhHHHHHHHHHHhcccccchhhhcCHHHHHHHHHHHHhhhc
Q 045386 31 NLAPLFQNLFTETEIITTLLGNYEGDMTRRVIRRIIREQLNGAEMAWLCLQLLDLEDTEEDVKRRDILEILDDINHFVHE 110 (706)
Q Consensus 31 ~~~~ll~~l~~~~~~i~~ll~~~~~~~~~~~~r~~i~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~v~~Wl~~lr~~ayd 110 (706)
+|++++++|..-......++.+++.++. ..+.|++.|+++|.++++.+.+.++++++.|+++||++|||
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~-----------~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD 70 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIE-----------DLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYV 70 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHH-----------HHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence 3557777776433322245555544444 45667999999999888754356899999999999999999
Q ss_pred hHHHHHHHHHHhhh
Q 045386 111 SDEAIDTFFINIME 124 (706)
Q Consensus 111 ~eD~lD~~~~~~~~ 124 (706)
+|||||+|.++...
T Consensus 71 ~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 71 IEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998864
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.41 E-value=8.4e-13 Score=148.04 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=82.5
Q ss_pred CceeEEEEeccCC-CCceEEeeCCCccccCcccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccChhhcCCCC
Q 045386 498 ANVKRYIILEHLT-EGDHLAVIDCENFCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPSLLCTLLN 575 (706)
Q Consensus 498 ~~~r~ls~~~~~~-~~~~ll~f~~~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~ 575 (706)
..+++|.+..+.. ... ...|.++++|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|.. .+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-------TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp TTCSEEECCSSCCCCCC-------HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccEEECCCCcccccC-------hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 5677777665421 110 04678999999999999999966 77899999999999999999999977 8999
Q ss_pred CcEEEccCCCCCc--cchhhccccccceeeec
Q 045386 576 LETLEMPSSYIDQ--SPEDIWMMQKLMHLNFG 605 (706)
Q Consensus 576 L~~L~L~~~~~~~--lP~~l~~L~~L~~L~l~ 605 (706)
|++|++++|.+.. +|..++++++|++|++.
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEE
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEec
Confidence 9999999998876 57899999999999993
No 79
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.7e-13 Score=139.31 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=133.3
Q ss_pred CcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeec
Q 045386 526 KFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFG 605 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~ 605 (706)
.+..+..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 4667888899999999887 6889999999999999999998 79999999999999999999998 9999999999993
Q ss_pred Cc---cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCC
Q 045386 606 SI---TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKP 682 (706)
Q Consensus 606 ~~---~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 682 (706)
.. .+| .+. . ++|++|++..+... ....++.+++|+.|++++|. ...++ .+..+++|+.|++++|...
T Consensus 94 ~N~l~~l~-~~~-~-~~L~~L~L~~N~l~---~~~~l~~l~~L~~L~Ls~N~---i~~~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 94 RNRLKNLN-GIP-S-ACLSRLFLDNNELR---DTDSLIHLKNLEILSIRNNK---LKSIV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SSCCSCCT-TCC-C-SSCCEEECCSSCCS---BSGGGTTCTTCCEEECTTSC---CCBCG-GGGGCTTCCEEECTTSCCC
T ss_pred CCccCCcC-ccc-c-CcccEEEccCCccC---CChhhcCcccccEEECCCCc---CCCCh-HHccCCCCCEEECCCCcCc
Confidence 32 344 344 4 78999998777653 24579999999999999985 33344 6889999999999996542
Q ss_pred CccccCCcccccccceEEecccC
Q 045386 683 SWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 683 ~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
.+ ....-.++|+.|+|++|+
T Consensus 164 ~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 164 NT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp BC---TTSTTCCCCCEEEEEEEE
T ss_pred ch---HHhccCCCCCEEeCCCCc
Confidence 22 222334789999999984
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.41 E-value=2.8e-13 Score=153.65 Aligned_cols=175 Identities=19% Similarity=0.177 Sum_probs=141.4
Q ss_pred cCcccccEEEecCCCCCcC---CccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch--hhcccccc
Q 045386 525 KKFKHLRVLNFGSAVLDQF---PPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE--DIWMMQKL 599 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~l---p~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~--~l~~L~~L 599 (706)
..+++|+.|++++|.++.. |..+..+++|++|++++|.+..+|..+..+++|++|++++|.+...+. .+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 6788999999999998754 677889999999999999999988889999999999999997776643 68899999
Q ss_pred ceeeecCc----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEE
Q 045386 600 MHLNFGSI----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLK 675 (706)
Q Consensus 600 ~~L~l~~~----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 675 (706)
++|++... ..|..+. .+++|++|++..+....+..+..++.+++|+.|++++|. ..+..|..+..+++|+.|+
T Consensus 424 ~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ--LEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp CEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEE
T ss_pred CEEeCcCCcccccchhhhh-cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc--cccCChhhhhcccCCCEEe
Confidence 99999322 3566678 899999999888765432366788999999999999886 6666688999999999999
Q ss_pred EeeCCCCCccccCCcc--cccccceEEecccC
Q 045386 676 LVNESKPSWMVLSEYQ--FPPSLIQLSLSIVR 705 (706)
Q Consensus 676 L~~~~~~~l~~l~~~~--~p~~L~~L~L~~n~ 705 (706)
+++|.. ..++... -.++|+.|+|++|.
T Consensus 501 l~~n~l---~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 501 MASNQL---KSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCSSCC---SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcC---CCCCHHHhhcccCCcEEEecCCc
Confidence 999643 3332211 23689999999985
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=8.5e-13 Score=149.80 Aligned_cols=168 Identities=20% Similarity=0.156 Sum_probs=132.6
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceee
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLN 603 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~ 603 (706)
+..++.|+.|++++|.+..+| .+..|++|++|+|++|.+..+|+ ++.|++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 456788999999999988876 58889999999999999998886 889999999999999888877 688999999999
Q ss_pred e--cCccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCC
Q 045386 604 F--GSITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESK 681 (706)
Q Consensus 604 l--~~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 681 (706)
+ +.+.-++.+. .+++|+.|++..+... ....++.+++|+.|++++|. .....| +..+++|+.|+|++|..
T Consensus 116 Ls~N~l~~l~~l~-~l~~L~~L~Ls~N~l~---~l~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 116 LEHNGISDINGLV-HLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CTTSCCCCCGGGG-GCTTCSEEECCSSCCC---CCGGGGSCTTCSEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ecCCCCCCCcccc-CCCccCEEECCCCccC---CchhhcccCCCCEEECcCCc--CCCchh--hccCCCCCEEECcCCCC
Confidence 9 3333345688 8899999988776553 23678899999999999885 333333 88899999999999654
Q ss_pred CCccccCCcccccccceEEecccC
Q 045386 682 PSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 682 ~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
..++...-.++|+.|+|++|+
T Consensus 188 ---~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 188 ---SDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ---CBCGGGTTCTTCSEEECCSEE
T ss_pred ---CCChHHccCCCCCEEEccCCc
Confidence 323322334789999999874
No 82
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=1.1e-12 Score=129.57 Aligned_cols=141 Identities=16% Similarity=0.239 Sum_probs=62.2
Q ss_pred EEEecCCCCCcCCccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCcc-chhhccccccceeeec---C
Q 045386 532 VLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQS-PEDIWMMQKLMHLNFG---S 606 (706)
Q Consensus 532 ~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~l-P~~l~~L~~L~~L~l~---~ 606 (706)
.++++++.++.+|..+. .+|+.|+|++|.++.+|. .+..+++|++|+|++|.+..+ |..|.++++|++|+++ .
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 44444444444444332 344444554444444443 344444455555544444444 3344444444444441 1
Q ss_pred ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 607 ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 607 ~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
..+|.+ +. .+++|++|++..+..... .+..+..+++|+.|++++|. .....+..+..+++|+.|+|++
T Consensus 93 ~~l~~~~f~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 93 TELPKSLFE-GLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNK--LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCTTTTT-TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHhHcc-CCCCCCEEECCCCCCCEe-CHHHcCCCCCCCEEECCCCc--CCEECHHHHhCCCCCCEEEeCC
Confidence 133333 23 444444444444333222 33444455555555555443 2222223344455555555554
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=8.1e-13 Score=156.98 Aligned_cols=177 Identities=18% Similarity=0.094 Sum_probs=126.6
Q ss_pred CcccccEEEecCCCCCcC-CccccccccCcEEEcccCC-cccc-ChhhcCCCCCcEEEccCCCCCcc-chhhccccccce
Q 045386 526 KFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPS-LKRL-PSLLCTLLNLETLEMPSSYIDQS-PEDIWMMQKLMH 601 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~-l~~l-P~~i~~L~~L~~L~L~~~~~~~l-P~~l~~L~~L~~ 601 (706)
-.++|++|+|++|.++.+ |..+.++++|++|+|++|. +..+ |..+++|++|++|+|++|.+..+ |..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 456889999999998855 6778899999999999884 5567 66788999999999999988776 678889999999
Q ss_pred eeecC--c--cCCcc--hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCC--CCCcE
Q 045386 602 LNFGS--I--TLPAP--PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCEL--HKLEC 673 (706)
Q Consensus 602 L~l~~--~--~lp~~--i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l--~~L~~ 673 (706)
|++.. . .+|.. ++ .+++|++|++..+.......+..++++++|+.|++++|. .....+..+..+ ++|+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~--i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFR-NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ--IFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp EECTTCCCSSCCSTTCCCS-SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC--CCCCCSGGGHHHHHCSSCC
T ss_pred eeCcCCCCCcccccCcccc-ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc--CCeeCHHHcccccCCccce
Confidence 99832 2 23544 77 888999998887766544234578899999999998886 444455555555 78888
Q ss_pred EEEeeCCCCC-----ccccCCcccccccceEEecccC
Q 045386 674 LKLVNESKPS-----WMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 674 L~L~~~~~~~-----l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
|++++|.... +..+...-...+|+.|+|++|+
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 8888864311 1111000001248888888773
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.39 E-value=4.3e-13 Score=153.84 Aligned_cols=137 Identities=19% Similarity=0.124 Sum_probs=96.0
Q ss_pred cccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccccceeeec
Q 045386 529 HLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFG 605 (706)
Q Consensus 529 ~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~ 605 (706)
.+++|||++|.|+.+| ..|.++++|++|+|++|.|+.+|+ .|.+|++|++|+|++|.++.+|. .|.++++|++|++.
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 6788888888888775 457788888888888888887765 46778888888888888887775 46778888888882
Q ss_pred ---CccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCC
Q 045386 606 ---SITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCEL 668 (706)
Q Consensus 606 ---~~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l 668 (706)
...+|+. ++ .+++|++|++..+.......+..++.+++|+.|++++|. ..+..+..+..+
T Consensus 133 ~N~l~~l~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L 196 (635)
T 4g8a_A 133 ETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVL 196 (635)
T ss_dssp TSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHH
T ss_pred CCcCCCCChhhhh-cCcccCeeccccCccccCCCchhhccchhhhhhcccCcc--ccccccccccch
Confidence 2245543 66 778888887776655443356667778888888887775 333334444433
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.39 E-value=1.9e-12 Score=146.77 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=53.0
Q ss_pred cccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCc--cchhhccccc
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQ--SPEDIWMMQK 598 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~--lP~~l~~L~~ 598 (706)
.|.++++|++|+|++|.++.+| ..|+.+++|++|++++|.++.+|. .++++++|++|++++|.+.. +|..++++++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 150 (570)
T 2z63_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (570)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred cccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCC
Confidence 4566666666666666666543 456666666666666666666654 46666666777766665553 5666666666
Q ss_pred cceeee
Q 045386 599 LMHLNF 604 (706)
Q Consensus 599 L~~L~l 604 (706)
|++|++
T Consensus 151 L~~L~l 156 (570)
T 2z63_A 151 LEHLDL 156 (570)
T ss_dssp CCEEEC
T ss_pred CCEEeC
Confidence 666666
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=4.2e-13 Score=149.02 Aligned_cols=168 Identities=12% Similarity=0.064 Sum_probs=131.3
Q ss_pred cccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCcc-chhhccccccce
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQS-PEDIWMMQKLMH 601 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~l-P~~l~~L~~L~~ 601 (706)
.+..+++|++|+|++|.++.+|. .++|++|++++|.+..+|.. .+++|++|+|++|.+..+ |..++.+++|++
T Consensus 75 ~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 148 (487)
T 3oja_A 75 DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (487)
T ss_dssp ECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred ccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence 37899999999999999887663 38999999999999988753 578999999999988877 448899999999
Q ss_pred eeecCc----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEe
Q 045386 602 LNFGSI----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLV 677 (706)
Q Consensus 602 L~l~~~----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 677 (706)
|+++.. ..|..+...+++|++|++..+.... ...+..+++|+.|++++|. ...+|..+..+++|+.|+++
T Consensus 149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~---~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---VKGQVVFAKLKTLDLSSNK---LAFMGPEFQSAAGVTWISLR 222 (487)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---EECCCCCTTCCEEECCSSC---CCEECGGGGGGTTCSEEECT
T ss_pred EECCCCCCCCcChHHHhhhCCcccEEecCCCcccc---ccccccCCCCCEEECCCCC---CCCCCHhHcCCCCccEEEec
Confidence 999332 2455554368899999988776532 3445579999999999885 44566678899999999999
Q ss_pred eCCCCCccccCC-cccccccceEEecccC
Q 045386 678 NESKPSWMVLSE-YQFPPSLIQLSLSIVR 705 (706)
Q Consensus 678 ~~~~~~l~~l~~-~~~p~~L~~L~L~~n~ 705 (706)
+|.. ..++. ....++|+.|+|++|.
T Consensus 223 ~N~l---~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 223 NNKL---VLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TSCC---CEECTTCCCCTTCCEEECTTCC
T ss_pred CCcC---cccchhhccCCCCCEEEcCCCC
Confidence 9653 33321 1224789999999985
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=7.6e-13 Score=138.01 Aligned_cols=171 Identities=18% Similarity=0.172 Sum_probs=131.9
Q ss_pred CcccccEEEecCCCCC-cCCccc--cccccCcEEEcccCCccc-cC----hhhcCCCCCcEEEccCCCCCccc-hhhccc
Q 045386 526 KFKHLRVLNFGSAVLD-QFPPGL--ENLFLLKYLKLNIPSLKR-LP----SLLCTLLNLETLEMPSSYIDQSP-EDIWMM 596 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~-~lp~~~--~~L~~Lr~L~Ls~~~l~~-lP----~~i~~L~~L~~L~L~~~~~~~lP-~~l~~L 596 (706)
.++.|+.|++++|.++ ..|..+ ..+++|++|+|++|.+.. .| ..+..+++|++|+|++|.+..+| ..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 4566999999999988 567777 899999999999999874 23 34567999999999999988776 478899
Q ss_pred cccceeeecCcc------C--CcchhcCCccCcccccccccccCCCCch----hcCCCCCCCeEEEEccCCcCccchHHh
Q 045386 597 QKLMHLNFGSIT------L--PAPPKNYSSSLKNLIFISALNPSSCTPD----ILDRLPSVRTLRISGDLSYYQSGVSKS 664 (706)
Q Consensus 597 ~~L~~L~l~~~~------l--p~~i~~~l~~L~~L~~~~~~~~~~~~~~----~l~~L~~L~~L~l~~~~~~~~~~~~~~ 664 (706)
++|++|+++... + +..++ .+++|++|++..+.... .+. -++.+++|++|++++|. .....|..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~--l~~~~~~l~~~l~~L~~L~Ls~N~--l~~~~p~~ 243 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPH-KFPAIQNLALRNTGMET--PTGVCAALAAAGVQPHSLDLSHNS--LRATVNPS 243 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTT-SSCCCCSCBCCSSCCCC--HHHHHHHHHHHTCCCSSEECTTSC--CCCCCCSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhh-cCCCCCEEECCCCCCCc--hHHHHHHHHhcCCCCCEEECCCCC--CCccchhh
Confidence 999999994332 2 22346 88999999988776521 122 25788999999999996 55555666
Q ss_pred cCCC---CCCcEEEEeeCCCCCccccCCcccccccceEEecccC
Q 045386 665 LCEL---HKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 665 l~~l---~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
+..+ ++|+.|++++|. +..++. .++++|+.|+|++|+
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~---l~~lp~-~~~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAG---LEQVPK-GLPAKLRVLDLSSNR 283 (310)
T ss_dssp CSSCCCCTTCCCEECCSSC---CCSCCS-CCCSCCSCEECCSCC
T ss_pred HHhccCcCcCCEEECCCCC---CCchhh-hhcCCCCEEECCCCc
Confidence 6666 699999999965 444432 234799999999996
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=1.7e-12 Score=128.22 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=80.7
Q ss_pred cEEEecCCCCCcCCccccccccCcEEEcccCCccccCh--hhcCCCCCcEEEccCCCCCccch-hhccccccceeeecC-
Q 045386 531 RVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPS--LLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFGS- 606 (706)
Q Consensus 531 ~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~--~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~~- 606 (706)
+.+++++|.++.+|..+.. .+++|+|++|.++.+|. .+.++++|++|+|++|.+..+|. .|..+++|++|+++.
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4566666666666654432 34566666666665532 25566666666666666665554 556666666666621
Q ss_pred --ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 607 --ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 607 --~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
..+|.. +. .+++|++|++..+..... .+..+..+++|+.|++++|. .....|..+..+++|+.|+|++|
T Consensus 92 ~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 RLENVQHKMFK-GLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQ--ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCCGGGGT-TCSSCCEEECTTSCCCCB-CTTSSTTCTTCSEEECTTSC--CCCBCTTTTTTCTTCCEEECCSC
T ss_pred ccCccCHhHhc-CCcCCCEEECCCCcCCeE-CHhHcCCCccCCEEECCCCc--CCEECHHHhcCCCCCCEEEecCc
Confidence 133333 44 566666666555544332 44556666666666666654 33334556666666666666664
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=2.1e-13 Score=143.75 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=97.3
Q ss_pred cccCcccccEEEecCCCCC-cCCccccccccCcEEEcccC-Ccc--ccChhhcCCCCCcEEEccCC-CCCc--cchhhcc
Q 045386 523 FCKKFKHLRVLNFGSAVLD-QFPPGLENLFLLKYLKLNIP-SLK--RLPSLLCTLLNLETLEMPSS-YIDQ--SPEDIWM 595 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~Lr~L~Ls~~-~l~--~lP~~i~~L~~L~~L~L~~~-~~~~--lP~~l~~ 595 (706)
.+..+++|++|+|++|.++ ..|..++.+++|++|++++| .++ .+|..+.++++|++|++++| .++. +|..+..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 4566777777777777766 45666667777777777777 565 36666667777777777777 6664 5666667
Q ss_pred cc-ccceeeecCc-------cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCC
Q 045386 596 MQ-KLMHLNFGSI-------TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCE 667 (706)
Q Consensus 596 L~-~L~~L~l~~~-------~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~ 667 (706)
++ +|++|++... .+|..+. .+++|++|++..+...+...+..++.+++|+.|++++|. .........+..
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~ 270 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGE 270 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGG
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhc
Confidence 77 7777777322 2344455 667777777666653222245566777777777777663 122222235566
Q ss_pred CCCCcEEEEeeC
Q 045386 668 LHKLECLKLVNE 679 (706)
Q Consensus 668 l~~L~~L~L~~~ 679 (706)
+++|+.|++++|
T Consensus 271 ~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeccCc
Confidence 777777777764
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.35 E-value=3.3e-12 Score=148.11 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=97.9
Q ss_pred ccccCcccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQK 598 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~ 598 (706)
..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|. .++++++|++|++++|.+..+|. .++++++
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 3466677777777777776644 4556777777777777777777766 36777777777777776666653 5677777
Q ss_pred cceeeecCc----cCCcchhcCCccCcccccccccccCCCCchhcC--CCCCCCeEEEEccCCcCccchHHhcCCCCCCc
Q 045386 599 LMHLNFGSI----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILD--RLPSVRTLRISGDLSYYQSGVSKSLCELHKLE 672 (706)
Q Consensus 599 L~~L~l~~~----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~--~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 672 (706)
|++|++... ..|..++ .+++|++|++..+..... .+..++ .+++|+.|++++|. ..+..|..+..+.+|+
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQ--IKEFSPGCFHAIGRLF 198 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTCC--CCCBCTTGGGGSSEEC
T ss_pred CCEEECCCCcccccCchhhc-ccccCCEEEccCCccccc-CHHHhhccccccccEEECCCCc--ccccChhhhhhhhhhh
Confidence 777777221 2344466 677777777665544322 333332 44667777777664 4444555666667777
Q ss_pred EEEEeeC
Q 045386 673 CLKLVNE 679 (706)
Q Consensus 673 ~L~L~~~ 679 (706)
.|++.++
T Consensus 199 ~L~l~~~ 205 (680)
T 1ziw_A 199 GLFLNNV 205 (680)
T ss_dssp EEECTTC
T ss_pred hhhcccc
Confidence 7776654
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=2.6e-12 Score=125.57 Aligned_cols=125 Identities=22% Similarity=0.320 Sum_probs=74.6
Q ss_pred ccccEEEecCCCCCcCCcc-ccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccchh-hccccccceeee
Q 045386 528 KHLRVLNFGSAVLDQFPPG-LENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHLNF 604 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~-~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L~l 604 (706)
++|++|++++|.++.+|.. +..+++|++|++++|.++.+|.. +..+++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4567777777776655543 56677777777777777666654 46667777777777766666653 466667777766
Q ss_pred cC---ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 605 GS---ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 605 ~~---~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
+. ..+|.. +. .+++|++|++..+..... .+..+..+++|+.|++++|.
T Consensus 108 ~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 108 NTNQLQSLPDGVFD-KLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCcccCHhHhc-cCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCC
Confidence 21 234433 44 566666666555443322 33335566666666666553
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.34 E-value=1.1e-12 Score=137.26 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=129.8
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch-hhccccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLM 600 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~ 600 (706)
..+..+++|++|++++|.++.+| .+++|++|++++|.+..+|.. .+++|++|++++|.+..++. .++.+++|+
T Consensus 74 ~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 74 LDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp EEETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred hhhhhcCCCCEEECcCCcccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 33789999999999999988665 348999999999999988754 47899999999999988865 788999999
Q ss_pred eeeecCc---c-CCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEE
Q 045386 601 HLNFGSI---T-LPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKL 676 (706)
Q Consensus 601 ~L~l~~~---~-lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L 676 (706)
+|+++.. . .|..+...+++|++|++..+... .......+++|+.|++++|. ...+|..+..+++|+.|++
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNK---LAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC---EEECCCCCTTCCEEECCSSC---CCEECGGGGGGTTCSEEEC
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc---ccccccccccCCEEECCCCc---CCcchhhhcccCcccEEEC
Confidence 9999333 2 23344326889999998776642 22344568999999999885 4456667889999999999
Q ss_pred eeCCCCCccccCC-cccccccceEEecccC
Q 045386 677 VNESKPSWMVLSE-YQFPPSLIQLSLSIVR 705 (706)
Q Consensus 677 ~~~~~~~l~~l~~-~~~p~~L~~L~L~~n~ 705 (706)
++|.. ..++. ....++|+.|+|++|.
T Consensus 222 ~~N~l---~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 222 RNNKL---VLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TTSCC---CEECTTCCCCTTCCEEECTTCC
T ss_pred cCCcc---cchhhHhhcCCCCCEEEccCCC
Confidence 99654 33321 1224789999999985
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=2.5e-13 Score=143.21 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=136.5
Q ss_pred ccCcccccEEEecCCCCC-c-CCccccccccCcEEEcccCCcc-ccChhhcCCCCCcEEEccCC-CCC--ccchhhcccc
Q 045386 524 CKKFKHLRVLNFGSAVLD-Q-FPPGLENLFLLKYLKLNIPSLK-RLPSLLCTLLNLETLEMPSS-YID--QSPEDIWMMQ 597 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~-~-lp~~~~~L~~Lr~L~Ls~~~l~-~lP~~i~~L~~L~~L~L~~~-~~~--~lP~~l~~L~ 597 (706)
+..+++|+.|++++|.++ . +|..+..+++|++|+|++|.+. ..|..++.+++|++|++++| .++ .+|..+.+++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 456899999999999987 3 7888899999999999999887 67888999999999999999 777 4787889999
Q ss_pred ccceeeecCc-c-----CCcchhcCCc-cCccccccccc--ccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCC
Q 045386 598 KLMHLNFGSI-T-----LPAPPKNYSS-SLKNLIFISAL--NPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCEL 668 (706)
Q Consensus 598 ~L~~L~l~~~-~-----lp~~i~~~l~-~L~~L~~~~~~--~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l 668 (706)
+|++|++... . +|..+. .++ +|++|++..+. ......+..++.+++|+.|++++|. ......+..+..+
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~l~~~~~~~l~~l 246 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV-MLKNDCFQEFFQL 246 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT-TCCGGGGGGGGGC
T ss_pred CCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC-cCCHHHHHHHhCC
Confidence 9999999433 2 455577 888 99999988774 2212245567889999999999885 1223556688889
Q ss_pred CCCcEEEEeeCCCCCccccCCcccccccceEEeccc
Q 045386 669 HKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIV 704 (706)
Q Consensus 669 ~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n 704 (706)
++|+.|++++|..-.-..+....-.++|+.|+|++|
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999999999975300011111112478999999887
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=8.2e-12 Score=124.07 Aligned_cols=125 Identities=21% Similarity=0.236 Sum_probs=97.0
Q ss_pred ccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccchh-hccccccceeee
Q 045386 528 KHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHLNF 604 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L~l 604 (706)
++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+|.. +..+++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 6788888888888866 56678888888888888888888765 57888888888888888888764 578888888888
Q ss_pred c---CccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 605 G---SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 605 ~---~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
. ...+|..+. .+++|++|++..+..... .+..+..+++|+.|++.+|.
T Consensus 120 s~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLTELPRGIE-RLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCCSCCTTGG-GCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred cCCcccccCcccc-cCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCC
Confidence 2 236787887 888888888776655433 44557788888888888775
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=4.2e-12 Score=135.38 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=84.4
Q ss_pred cEEEecCCCCCcCCccccccccCcEEEcccCCccccChhh-c-CCCCCcEEEccCCCCCccch-hhccccccceeeecCc
Q 045386 531 RVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLL-C-TLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFGSI 607 (706)
Q Consensus 531 ~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i-~-~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~~~ 607 (706)
++++++++.++.+|..+. ..+++|+|++|.++.+|... . ++++|++|+|++|.+..+|. .|..+++|++|+++..
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 466666666666665543 24666777777666665543 3 66677777777776666654 4666667777766221
Q ss_pred ---cCCc-chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhc----CCCCCCcEEEEeeC
Q 045386 608 ---TLPA-PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSL----CELHKLECLKLVNE 679 (706)
Q Consensus 608 ---~lp~-~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l----~~l~~L~~L~L~~~ 679 (706)
.+|. .+. .+++|+.|++..+..... .+..+..+++|+.|++++|. ...+|..+ ..+++|+.|+|++|
T Consensus 99 ~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~---l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 99 HLHTLDEFLFS-DLQALEVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQ---ISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC---CCSCCGGGTC----CTTCCEEECCSS
T ss_pred cCCcCCHHHhC-CCcCCCEEECCCCcccEE-CHHHhCCcccCCEEECCCCc---CCeeCHHHhcCcccCCcCCEEECCCC
Confidence 3333 245 666677666655554332 45566677777777777664 22333332 45677777777774
Q ss_pred C
Q 045386 680 S 680 (706)
Q Consensus 680 ~ 680 (706)
.
T Consensus 174 ~ 174 (361)
T 2xot_A 174 K 174 (361)
T ss_dssp C
T ss_pred C
Confidence 3
No 96
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.30 E-value=7.6e-12 Score=145.07 Aligned_cols=175 Identities=17% Similarity=0.117 Sum_probs=86.1
Q ss_pred ccCcccccEEEecCCCCCcC-CccccccccCcEEEcccCCcc---ccChhhcCCCCCcEEEccCCCCCccch-hhccccc
Q 045386 524 CKKFKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLK---RLPSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQK 598 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~---~lP~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~ 598 (706)
|.+++.|+.|++++|.+..+ +..+..+++|++|++++|.+. .+|..++++++|++|++++|.+..+|. .+..+++
T Consensus 426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 505 (680)
T 1ziw_A 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505 (680)
T ss_dssp GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc
Confidence 34444444444444444322 233444444555555444432 345555566666666666665555554 3556666
Q ss_pred cceeeecCc---cC-----Cc----chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcC
Q 045386 599 LMHLNFGSI---TL-----PA----PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLC 666 (706)
Q Consensus 599 L~~L~l~~~---~l-----p~----~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~ 666 (706)
|++|+++.. .+ |. .++ .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+.
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~--l~~l~~~~~~ 581 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNN--LNTLPASVFN 581 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTT-TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC--CCCCCTTTTT
T ss_pred cCEEeCCCCCccccchhhccCCcchhhc-CCCCCCEEECCCCCCCCC-CHHHcccccCcceeECCCCC--CCcCCHhHhC
Confidence 666666211 11 11 144 555666666554443321 22345666666666666553 2222223345
Q ss_pred CCCCCcEEEEeeCCCCCccccCCcc---cccccceEEecccC
Q 045386 667 ELHKLECLKLVNESKPSWMVLSEYQ---FPPSLIQLSLSIVR 705 (706)
Q Consensus 667 ~l~~L~~L~L~~~~~~~l~~l~~~~---~p~~L~~L~L~~n~ 705 (706)
.+++|+.|++++|. +..++... ..++|+.|+|++|.
T Consensus 582 ~l~~L~~L~L~~N~---l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 582 NQVSLKSLNLQKNL---ITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TCTTCCEEECTTSC---CCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CCCCCCEEECCCCc---CCccChhHhcccccccCEEEccCCC
Confidence 56666666666632 33332211 12567777777664
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=8.6e-12 Score=123.94 Aligned_cols=144 Identities=20% Similarity=0.255 Sum_probs=105.4
Q ss_pred ccEEEecCCCCCcCCccccccccCcEEEcccCCcccc-ChhhcCCCCCcEEEccCCCCCccch-hhccccccceeeecC-
Q 045386 530 LRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRL-PSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFGS- 606 (706)
Q Consensus 530 L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~l-P~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~~- 606 (706)
...++.+++.++.+|..+. ++|++|+|++|.+..+ |..+.++++|++|+|++|.+..+|. .+..+++|++|+++.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567888888888886554 7888888888888876 5557888888888888888888876 457888888888822
Q ss_pred --ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCC
Q 045386 607 --ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 607 --~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
..+|.. +. .+++|++|++..+... . .+..+..+++|+.|++++|. .....+..+..+++|+.|++++|.
T Consensus 99 ~l~~l~~~~~~-~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 99 QLTVLPSAVFD-RLVHLKELFMCCNKLT-E-LPRGIERLTHLTHLALDQNQ--LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCCTTTTT-TCTTCCEEECCSSCCC-S-CCTTGGGCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccChhHhC-cchhhCeEeccCCccc-c-cCcccccCCCCCEEECCCCc--CCccCHHHHhCCCCCCEEEeeCCC
Confidence 245554 45 7888888887766554 2 56777888888888888775 333333567778888888888754
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=8.6e-13 Score=142.11 Aligned_cols=179 Identities=18% Similarity=0.134 Sum_probs=113.2
Q ss_pred ccCcccccEEEecCCCCCc-----CCccccccccCcEEEcccCCcc-----ccChhhcCC---------CCCcEEEccCC
Q 045386 524 CKKFKHLRVLNFGSAVLDQ-----FPPGLENLFLLKYLKLNIPSLK-----RLPSLLCTL---------LNLETLEMPSS 584 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~-----lp~~~~~L~~Lr~L~Ls~~~l~-----~lP~~i~~L---------~~L~~L~L~~~ 584 (706)
+..+++|++|+|++|.++. +|..+..+++|++|+|++|.++ .++..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 4567788888888887764 5667777888888888888775 233344444 78888888888
Q ss_pred CCC--ccc---hhhccccccceeeecCccC---------CcchhcCCccCcccccccccccC---CCCchhcCCCCCCCe
Q 045386 585 YID--QSP---EDIWMMQKLMHLNFGSITL---------PAPPKNYSSSLKNLIFISALNPS---SCTPDILDRLPSVRT 647 (706)
Q Consensus 585 ~~~--~lP---~~l~~L~~L~~L~l~~~~l---------p~~i~~~l~~L~~L~~~~~~~~~---~~~~~~l~~L~~L~~ 647 (706)
.+. .+| ..+..+++|++|++....+ |..+. .+++|++|++..+.... ...+..+..+++|+.
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 664 444 4566777888888733222 22566 77778887776655320 114556777788888
Q ss_pred EEEEccCCcCccc----hHHhc--CCCCCCcEEEEeeCCCCC--ccccCCcc--cccccceEEecccC
Q 045386 648 LRISGDLSYYQSG----VSKSL--CELHKLECLKLVNESKPS--WMVLSEYQ--FPPSLIQLSLSIVR 705 (706)
Q Consensus 648 L~l~~~~~~~~~~----~~~~l--~~l~~L~~L~L~~~~~~~--l~~l~~~~--~p~~L~~L~L~~n~ 705 (706)
|++++|. .... ++..+ +.+++|+.|+|++|.... +..++... ..++|+.|+|++|+
T Consensus 249 L~L~~n~--i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 249 LGLNDCL--LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp EECTTCC--CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred EECCCCC--CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 8887775 2222 45666 337788888888754311 00122111 13678888888875
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=4.5e-12 Score=119.36 Aligned_cols=130 Identities=19% Similarity=0.157 Sum_probs=89.5
Q ss_pred CcccccEEEecCCCCC--cCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCc-cchhhcccccccee
Q 045386 526 KFKHLRVLNFGSAVLD--QFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQ-SPEDIWMMQKLMHL 602 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~--~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~-lP~~l~~L~~L~~L 602 (706)
..+.|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3477999999999988 8888888999999999999998888 678889999999999998877 66666678888888
Q ss_pred eecCccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchH----HhcCCCCCCcEEEEee
Q 045386 603 NFGSITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVS----KSLCELHKLECLKLVN 678 (706)
Q Consensus 603 ~l~~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~----~~l~~l~~L~~L~L~~ 678 (706)
+++...+. ....+..++.+++|+.|++++|. ...++ ..+..+++|+.|++++
T Consensus 101 ~Ls~N~l~---------------------~~~~~~~l~~l~~L~~L~l~~N~---l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 101 NLSGNKLK---------------------DISTLEPLKKLECLKSLDLFNCE---VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ECBSSSCC---------------------SSGGGGGGSSCSCCCEEECCSSG---GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred eccCCccC---------------------cchhHHHHhcCCCCCEEEeeCCc---CcchHHHHHHHHHhCccCcEecCCC
Confidence 77322111 00011334455556666665553 22222 2556666666666666
Q ss_pred CC
Q 045386 679 ES 680 (706)
Q Consensus 679 ~~ 680 (706)
|.
T Consensus 157 n~ 158 (168)
T 2ell_A 157 RE 158 (168)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=1.5e-11 Score=121.44 Aligned_cols=125 Identities=14% Similarity=0.203 Sum_probs=104.0
Q ss_pred ccccEEEecCCCCCcCCc-cccccccCcEEEcccCCcccc-ChhhcCCCCCcEEEccCCCCCccchh-hccccccceeee
Q 045386 528 KHLRVLNFGSAVLDQFPP-GLENLFLLKYLKLNIPSLKRL-PSLLCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHLNF 604 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~-~~~~L~~Lr~L~Ls~~~l~~l-P~~i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L~l 604 (706)
+.|+.|+|++|.++.+|. .+..+++|++|+|++|.+..+ |..+.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 578999999999997765 688899999999999999877 66789999999999999999999875 678999999999
Q ss_pred cCc---cC-CcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 605 GSI---TL-PAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 605 ~~~---~l-p~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
... .+ |..+. .+++|++|++..+..... .+..+..+++|+.|++++|.
T Consensus 112 ~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCC
Confidence 322 33 45577 899999999887766544 55568899999999999886
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.26 E-value=1.9e-11 Score=138.92 Aligned_cols=60 Identities=23% Similarity=0.133 Sum_probs=34.6
Q ss_pred CcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch
Q 045386 526 KFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE 591 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~ 591 (706)
.+++|++|+|++|.++.+|. .+.+|++|++++|.++.+|.. +++|++|+|++|.+..+|.
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC
Confidence 45556666666666555554 345566666666666555543 3566666666666555554
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=1.4e-11 Score=138.36 Aligned_cols=151 Identities=21% Similarity=0.222 Sum_probs=113.2
Q ss_pred ccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeecCc
Q 045386 528 KHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFGSI 607 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~~~ 607 (706)
++|+.|+|++|.++.+| ..+++|++|+|++|.++.+|. +++ +|++|+|++|.++.+|. .+++|++|+++..
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCC
Confidence 67999999999999888 557899999999999999997 665 89999999999988987 6889999999333
Q ss_pred ---cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCC-------cEEEEe
Q 045386 608 ---TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKL-------ECLKLV 677 (706)
Q Consensus 608 ---~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L-------~~L~L~ 677 (706)
.+|. .+++|++|++..+.... .+. +. ++|+.|++++|. ...+|. +.. +| +.|+|+
T Consensus 151 ~l~~lp~----~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~---L~~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 151 QLTMLPE----LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL---LESLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CCSCCCC----CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC---CSSCCC-CC----------CCEEEECC
T ss_pred ccCcCCC----cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC---CCchhh-HHH--hhhcccccceEEecC
Confidence 4553 45688888887766533 344 55 899999999885 335555 544 66 999999
Q ss_pred eCCCCCccccCCccc-ccccceEEecccC
Q 045386 678 NESKPSWMVLSEYQF-PPSLIQLSLSIVR 705 (706)
Q Consensus 678 ~~~~~~l~~l~~~~~-p~~L~~L~L~~n~ 705 (706)
+|.. ..++...+ .++|+.|+|++|+
T Consensus 216 ~N~l---~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 216 ENRI---THIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SSCC---CCCCGGGGGSCTTEEEECCSSS
T ss_pred CCcc---eecCHHHhcCCCCCEEEeeCCc
Confidence 9654 33331111 4689999999985
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=8.1e-13 Score=142.29 Aligned_cols=154 Identities=15% Similarity=0.134 Sum_probs=80.7
Q ss_pred ccCcccccEEEecCCCCC----cCCccc-------cccccCcEEEcccCCccc-----cChhhcCCCCCcEEEccCCCCC
Q 045386 524 CKKFKHLRVLNFGSAVLD----QFPPGL-------ENLFLLKYLKLNIPSLKR-----LPSLLCTLLNLETLEMPSSYID 587 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~----~lp~~~-------~~L~~Lr~L~Ls~~~l~~-----lP~~i~~L~~L~~L~L~~~~~~ 587 (706)
+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.+.. +|..+.++++|++|+|++|.+.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 455666666666665433 223333 456666666666666554 5556666666666666666553
Q ss_pred c-----cchhhccc---------cccceeeecCccC-----C---cchhcCCccCcccccccccccCC----CCchhcCC
Q 045386 588 Q-----SPEDIWMM---------QKLMHLNFGSITL-----P---APPKNYSSSLKNLIFISALNPSS----CTPDILDR 641 (706)
Q Consensus 588 ~-----lP~~l~~L---------~~L~~L~l~~~~l-----p---~~i~~~l~~L~~L~~~~~~~~~~----~~~~~l~~ 641 (706)
. ++..+..+ ++|++|+++...+ | ..+. .+++|++|.+..+..... ..+..+..
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 2 22233333 5666666622222 2 2344 555666666554433110 01114556
Q ss_pred CCCCCeEEEEccCCcCc----cchHHhcCCCCCCcEEEEeeCC
Q 045386 642 LPSVRTLRISGDLSYYQ----SGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 642 L~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
+++|+.|++++|. .. ..+|..+..+++|+.|+|++|.
T Consensus 215 ~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 215 CQELKVLDLQDNT--FTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp CTTCCEEECCSSC--CHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred CCCccEEECcCCC--CCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 6666666666654 22 4455566666666666666643
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.25 E-value=1.2e-11 Score=140.08 Aligned_cols=167 Identities=16% Similarity=0.119 Sum_probs=123.1
Q ss_pred ccccEEEecCCCCCcCCccccccccCcEEEcccCCccc-cChhhcCCCCCcEEEccCCCCCccc---hhhccccccceee
Q 045386 528 KHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKR-LPSLLCTLLNLETLEMPSSYIDQSP---EDIWMMQKLMHLN 603 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~-lP~~i~~L~~L~~L~L~~~~~~~lP---~~l~~L~~L~~L~ 603 (706)
..|+.|++++|.+...+ ....+++|++|++++|.++. +|..++++++|++|++++|.+..+| ..+..+++|++|+
T Consensus 331 ~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred CcceEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 45788888888765433 12678899999999999885 7778899999999999999887654 5688999999999
Q ss_pred ec--Cc-c-CCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 604 FG--SI-T-LPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 604 l~--~~-~-lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
++ .. . +|.+ +. .+++|+.|++..+..... .+..+. ++|+.|++++|. ...+|..+..+++|+.|++++
T Consensus 410 l~~N~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~-~~~~l~--~~L~~L~L~~N~---l~~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCA-WAESILVLNLSSNMLTGS-VFRCLP--PKVKVLDLHNNR---IMSIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp CTTSCCBSCCSSCCCC-CCTTCCEEECCSSCCCGG-GGSSCC--TTCSEEECCSSC---CCCCCTTTTSSCCCSEEECCS
T ss_pred CCCCcCCCccChhhhc-CcccCCEEECCCCCCCcc-hhhhhc--CcCCEEECCCCc---CcccChhhcCCCCCCEEECCC
Confidence 93 22 2 6665 55 788899998877655322 333332 689999999884 447888888899999999999
Q ss_pred CCCCCccccCCc--ccccccceEEecccC
Q 045386 679 ESKPSWMVLSEY--QFPPSLIQLSLSIVR 705 (706)
Q Consensus 679 ~~~~~l~~l~~~--~~p~~L~~L~L~~n~ 705 (706)
|.. ..++.. ...++|+.|+|++|.
T Consensus 483 N~l---~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 483 NQL---KSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SCC---CCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCC---CCCCHHHHhcCCCCCEEEecCCC
Confidence 543 333321 224689999999885
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.25 E-value=2.4e-11 Score=133.50 Aligned_cols=115 Identities=24% Similarity=0.371 Sum_probs=70.7
Q ss_pred ccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeecCc
Q 045386 528 KHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFGSI 607 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~~~ 607 (706)
++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+ .+|++|++++|.+..+| .++.+++|++|++...
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 56777777777777666 4777777777777777777666443 36777777777666666 4677777777777222
Q ss_pred ---cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 608 ---TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 608 ---~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
.+|. ..++|++|++..+... . .+ .++.+++|+.|++++|.
T Consensus 206 ~l~~l~~----~~~~L~~L~l~~n~l~-~-lp-~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 206 SLKKLPD----LPLSLESIVAGNNILE-E-LP-ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCSSCCC----CCTTCCEEECCSSCCS-S-CC-CCTTCTTCCEEECCSSC
T ss_pred cCCcCCC----CcCcccEEECcCCcCC-c-cc-ccCCCCCCCEEECCCCc
Confidence 2332 1235556665554332 1 23 36666666666666553
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=5.4e-12 Score=116.24 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=78.3
Q ss_pred cCcccccEEEecCCCCC--cCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCc-cchhhccccccce
Q 045386 525 KKFKHLRVLNFGSAVLD--QFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQ-SPEDIWMMQKLMH 601 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~--~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~-lP~~l~~L~~L~~ 601 (706)
...++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34578999999999988 8888889999999999999999888 678899999999999998887 7777777888888
Q ss_pred eeecCcc---CC--cchhcCCccCcccccccc
Q 045386 602 LNFGSIT---LP--APPKNYSSSLKNLIFISA 628 (706)
Q Consensus 602 L~l~~~~---lp--~~i~~~l~~L~~L~~~~~ 628 (706)
|+++... +| ..++ .+++|++|++..+
T Consensus 93 L~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N 123 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLK-KLENLKSLDLFNC 123 (149)
T ss_dssp EECTTSCCCSHHHHGGGG-GCTTCCEEECTTC
T ss_pred EECCCCcCCChHHHHHHh-hCCCCCEEeCcCC
Confidence 8883321 11 3344 4445555544443
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=1.1e-11 Score=121.01 Aligned_cols=141 Identities=23% Similarity=0.277 Sum_probs=62.5
Q ss_pred EEEecCCCCCcCCccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccchh-hccccccceeeecC---
Q 045386 532 VLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHLNFGS--- 606 (706)
Q Consensus 532 ~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L~l~~--- 606 (706)
.++.+++.++.+|..+ ..+|++|++++|.++.+|.. +.++++|++|++++|.+..+|.. +..+++|++|++..
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3444444444444333 23455555555555544433 34455555555555555444442 34455555555511
Q ss_pred ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 607 ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 607 ~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
..+|.. +. .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|++++
T Consensus 89 ~~~~~~~~~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 89 QSLPNGVFD-KLTQLKELALNTNQLQSL-PDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCCCTTTTT-TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHhHhc-CccCCCEEEcCCCcCccc-CHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecC
Confidence 123332 33 445555555444333221 22234455555555555443 2222222344455555555554
No 108
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.24 E-value=2.4e-11 Score=138.12 Aligned_cols=89 Identities=19% Similarity=0.117 Sum_probs=72.5
Q ss_pred CCceeEEEEeccCCCCceEEeeCCCccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCC
Q 045386 497 FANVKRYIILEHLTEGDHLAVIDCENFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNL 576 (706)
Q Consensus 497 ~~~~r~ls~~~~~~~~~~ll~f~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L 576 (706)
+.+++.|.+..+... .+...+++|++|+|++|.++.+|. .+++|++|+|++|.++.+|. .+.+|
T Consensus 60 ~~~L~~L~L~~N~l~----------~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L 123 (622)
T 3g06_A 60 PAHITTLVIPDNNLT----------SLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGL 123 (622)
T ss_dssp CTTCSEEEECSCCCS----------CCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTC
T ss_pred CCCCcEEEecCCCCC----------CCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCc
Confidence 356777777664111 111257899999999999999887 78999999999999999997 67899
Q ss_pred cEEEccCCCCCccchhhccccccceeee
Q 045386 577 ETLEMPSSYIDQSPEDIWMMQKLMHLNF 604 (706)
Q Consensus 577 ~~L~L~~~~~~~lP~~l~~L~~L~~L~l 604 (706)
++|++++|.+..+|.. +++|++|++
T Consensus 124 ~~L~L~~N~l~~lp~~---l~~L~~L~L 148 (622)
T 3g06_A 124 CKLWIFGNQLTSLPVL---PPGLQELSV 148 (622)
T ss_dssp CEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred CEEECCCCCCCcCCCC---CCCCCEEEC
Confidence 9999999999999974 488999999
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.24 E-value=2.6e-11 Score=119.60 Aligned_cols=125 Identities=13% Similarity=0.111 Sum_probs=104.9
Q ss_pred ccccEEEecCCCCCcCC--ccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccccceee
Q 045386 528 KHLRVLNFGSAVLDQFP--PGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLN 603 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp--~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~ 603 (706)
..++.|+|++|.++.++ ..+..+++|++|+|++|.++.+|. .+.++++|++|+|++|.+..+|. .+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 45789999999999774 348899999999999999998876 68999999999999999988877 588999999999
Q ss_pred ecCc---cC-CcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 604 FGSI---TL-PAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 604 l~~~---~l-p~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
++.. .+ |..+. .+++|++|++..+..... .+..+..+++|+.|++++|.
T Consensus 112 Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred CCCCcCCeECHhHcC-CCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcC
Confidence 9322 34 56688 899999999887766544 57789999999999999886
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.8e-12 Score=150.67 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=101.4
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccce
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMH 601 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~ 601 (706)
..|..++.|++|+|++|.+..+|..+..+++|++|+|++|.|+.+|..+++|++|++|+|++|.+..+|..|++|++|++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 55778888999999999988888888889999999999999888998889999999999999988888888889999999
Q ss_pred eee--c-CccCCcchhcCCccCcccccccccccCCCCchhcCCCCCC-CeEEEEccCCcCccchHHhcCCCCCCcEEEEe
Q 045386 602 LNF--G-SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSV-RTLRISGDLSYYQSGVSKSLCELHKLECLKLV 677 (706)
Q Consensus 602 L~l--~-~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L-~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 677 (706)
|++ + ...+|.+|+ .|++|++|++..+..... .+..+..+... ..|++.+|. ..+.+| ..|+.|+++
T Consensus 298 L~L~~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~-~p~~~~~~~~~~~~l~l~~N~--l~~~~p------~~l~~l~l~ 367 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFG-NLCNLQFLGVEGNPLEKQ-FLKILTEKSVTGLIFYLRDNR--PEIPLP------HERRFIEIN 367 (727)
T ss_dssp EECCSSCCCCCCSSTT-SCTTCCCEECTTSCCCSH-HHHHHHHHHHHHHHHHHHHCC--CCCCCC------CC-------
T ss_pred EECCCCCCCccChhhh-cCCCccEEeCCCCccCCC-ChHHHhhcchhhhHHhhccCc--ccCcCc------cccceeEee
Confidence 988 2 236788888 888888888777665433 44444433211 134455554 333333 356666666
Q ss_pred eC
Q 045386 678 NE 679 (706)
Q Consensus 678 ~~ 679 (706)
.+
T Consensus 368 ~n 369 (727)
T 4b8c_D 368 TD 369 (727)
T ss_dssp --
T ss_pred cc
Confidence 64
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1e-11 Score=144.30 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=79.8
Q ss_pred cccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhcccccccee
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHL 602 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L 602 (706)
.+.++++|++|+|++|.++.+|..|++|++|++|+|++|.|+.+|..+++|++|++|+|++|.++.+|..|++|++|++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCE
T ss_pred hhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEE
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCc
Q 045386 603 NFGSI 607 (706)
Q Consensus 603 ~l~~~ 607 (706)
++...
T Consensus 322 ~L~~N 326 (727)
T 4b8c_D 322 GVEGN 326 (727)
T ss_dssp ECTTS
T ss_pred eCCCC
Confidence 99433
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=3.9e-11 Score=134.69 Aligned_cols=136 Identities=21% Similarity=0.199 Sum_probs=110.6
Q ss_pred cCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeee
Q 045386 525 KKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNF 604 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l 604 (706)
..+++|++|+|++|.++.+|. ++. +|++|+|++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++
T Consensus 97 ~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 97 ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSV 167 (571)
T ss_dssp CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEEC
Confidence 457899999999999999988 666 99999999999999997 78999999999999999997 6789999999
Q ss_pred cC---ccCCcchhcCCccCcccccccccccCCCCchhcCCCCCC-------CeEEEEccCCcCccchHHhcCCCCCCcEE
Q 045386 605 GS---ITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSV-------RTLRISGDLSYYQSGVSKSLCELHKLECL 674 (706)
Q Consensus 605 ~~---~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L-------~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 674 (706)
+. ..+|. +. ++|+.|++.++... . .|. +.. +| +.|++++|. ...+|..+..+++|+.|
T Consensus 168 s~N~L~~lp~-l~---~~L~~L~Ls~N~L~-~-lp~-~~~--~L~~~~~~L~~L~Ls~N~---l~~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 168 RNNQLTFLPE-LP---ESLEALDVSTNLLE-S-LPA-VPV--RNHHSEETEIFFRCRENR---ITHIPENILSLDPTCTI 235 (571)
T ss_dssp CSSCCSCCCC-CC---TTCCEEECCSSCCS-S-CCC-CC----------CCEEEECCSSC---CCCCCGGGGGSCTTEEE
T ss_pred CCCCCCCcch-hh---CCCCEEECcCCCCC-c-hhh-HHH--hhhcccccceEEecCCCc---ceecCHHHhcCCCCCEE
Confidence 32 25676 43 78999998777654 2 344 544 66 999999884 55788888889999999
Q ss_pred EEeeCCC
Q 045386 675 KLVNESK 681 (706)
Q Consensus 675 ~L~~~~~ 681 (706)
+|++|..
T Consensus 236 ~L~~N~l 242 (571)
T 3cvr_A 236 ILEDNPL 242 (571)
T ss_dssp ECCSSSC
T ss_pred EeeCCcC
Confidence 9999654
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=2.4e-11 Score=129.48 Aligned_cols=149 Identities=18% Similarity=0.157 Sum_probs=101.3
Q ss_pred ccccEEEecCCCCCcCCcc-cc-ccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccccceee
Q 045386 528 KHLRVLNFGSAVLDQFPPG-LE-NLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLN 603 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~-~~-~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~ 603 (706)
..++.|+|++|.++.++.. +. .+++|++|+|++|.|..+|. .+.++++|++|+|++|.+..+|. .|..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3477888888888876544 44 78888888888888887764 47788888888888888877766 577888888888
Q ss_pred ecCc---cC-CcchhcCCccCcccccccccccCCCCchhc---CCCCCCCeEEEEccCCcCccchHHhcCCCCC--CcEE
Q 045386 604 FGSI---TL-PAPPKNYSSSLKNLIFISALNPSSCTPDIL---DRLPSVRTLRISGDLSYYQSGVSKSLCELHK--LECL 674 (706)
Q Consensus 604 l~~~---~l-p~~i~~~l~~L~~L~~~~~~~~~~~~~~~l---~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~--L~~L 674 (706)
+... .+ |..+. .+++|+.|++..+..... ....+ ..+++|+.|++++|. .....+..+..++. |+.|
T Consensus 119 L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l-~~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 119 LYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRF-PVELIKDGNKLPKLMLLDLSSNK--LKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp CCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSC-CGGGTC----CTTCCEEECCSSC--CCCCCHHHHHHSCHHHHTTE
T ss_pred CCCCcccEECHHHhC-CcccCCEEECCCCcCCee-CHHHhcCcccCCcCCEEECCCCC--CCccCHHHhhhccHhhcceE
Confidence 8322 23 44577 788888888766654332 22223 567888888888775 33333345556655 4778
Q ss_pred EEeeCC
Q 045386 675 KLVNES 680 (706)
Q Consensus 675 ~L~~~~ 680 (706)
+|++|.
T Consensus 195 ~l~~N~ 200 (361)
T 2xot_A 195 YLHNNP 200 (361)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 887743
No 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.19 E-value=9.4e-11 Score=127.10 Aligned_cols=138 Identities=17% Similarity=0.078 Sum_probs=94.7
Q ss_pred cccccccHHHHHHHH-hc---C-CCCcEEEEE--EcCCCchhhHHHHHHHcCCCcccc-----CC-cceEEEecCCCCHH
Q 045386 187 VSEFERGREELFDLL-IE---G-PSGLSVIAI--LDSNGFDKTVFAADIYNNNHVKFY-----FD-CLAWVRVSIGYYFG 253 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L-~~---~-~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~~-----F~-~~~wv~vs~~~~~~ 253 (706)
++||+.+++++.+.+ .. + ......+.| +|++|+||||||+.+++ ..... |+ ..+|+......+..
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCCCCHH
Confidence 999999999999988 42 2 012445555 99999999999999998 44332 23 25677766777889
Q ss_pred HHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHHhc--CCceEEEEccCCC-C------hhhHHHHHhhcCCC---C--
Q 045386 254 KILDDIINSLMPPSRARVIIGE-DYHLKKSILRDYLT--NKKYFIVRDDVFN-D------SDIWDDLEEVLPDK---Q-- 318 (706)
Q Consensus 254 ~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~--~kr~LlVlDdvw~-~------~~~~~~l~~~l~~~---~-- 318 (706)
.++..++.+++..... .. +..++...+.+.+. +++++||+||+|. + ...+..+...+... +
T Consensus 102 ~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV----RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp HHHHHHHHHHTCCCCC----TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred HHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 9999999999765321 12 55667777777775 6799999999987 1 13444443433211 2
Q ss_pred CCcEEEEeeCCc
Q 045386 319 NGSRVLILVTDP 330 (706)
Q Consensus 319 ~gs~IivTTR~~ 330 (706)
....||+||+..
T Consensus 178 ~~v~lI~~~~~~ 189 (412)
T 1w5s_A 178 NRIGFLLVASDV 189 (412)
T ss_dssp CBEEEEEEEEET
T ss_pred ceEEEEEEeccc
Confidence 344588788644
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.19 E-value=9.3e-11 Score=128.84 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=109.1
Q ss_pred cccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeec-
Q 045386 527 FKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFG- 605 (706)
Q Consensus 527 l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~- 605 (706)
++.|++|++++|.++.+|... ++|++|++++|.++.+| .++++++|++|++++|.+..+|..+ .+|++|++.
T Consensus 110 ~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS
T ss_pred cCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC
Confidence 478999999999988776432 68999999999999999 6999999999999999999888654 589999992
Q ss_pred -C-ccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCC
Q 045386 606 -S-ITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESK 681 (706)
Q Consensus 606 -~-~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 681 (706)
. ..+| .++ .+++|++|++..+.... .+. ..++|+.|++++|. ...+| .+..+++|+.|++++|..
T Consensus 183 n~l~~l~-~~~-~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~n~---l~~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 183 NQLEELP-ELQ-NLPFLTAIYADNNSLKK--LPD---LPLSLESIVAGNNI---LEELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp SCCSSCC-CCT-TCTTCCEEECCSSCCSS--CCC---CCTTCCEEECCSSC---CSSCC-CCTTCTTCCEEECCSSCC
T ss_pred CcCCcCc-ccc-CCCCCCEEECCCCcCCc--CCC---CcCcccEEECcCCc---CCccc-ccCCCCCCCEEECCCCcC
Confidence 2 2566 688 99999999987665432 222 22589999999885 33666 488999999999998643
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2e-11 Score=115.90 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=91.3
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccc-cCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhh-cccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLF-LLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDI-WMMQKL 599 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~-~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l-~~L~~L 599 (706)
+.+..+..|+.|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|..+ +.+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 446678899999999999998865 55554 999999999999988 58899999999999999999998755 888899
Q ss_pred ceeeecCc---cCCc--chhcCCccCcccccccccccCCCCch----hcCCCCCCCeEEEEccC
Q 045386 600 MHLNFGSI---TLPA--PPKNYSSSLKNLIFISALNPSSCTPD----ILDRLPSVRTLRISGDL 654 (706)
Q Consensus 600 ~~L~l~~~---~lp~--~i~~~l~~L~~L~~~~~~~~~~~~~~----~l~~L~~L~~L~l~~~~ 654 (706)
++|+++.. .+|. .+. .+++|++|++..+.... .+. .++.+++|+.|+++.+.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCC
Confidence 99988332 3443 455 55556665554443321 222 24555555555555543
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=1e-10 Score=112.86 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=99.3
Q ss_pred ccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch-hhccccccceeeecC--
Q 045386 530 LRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFGS-- 606 (706)
Q Consensus 530 L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~~-- 606 (706)
-++++++++.++.+|..+. .+|++|+|++|.++.+|..+.++++|++|+|++|.+..+|. .|.++++|++|+++.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3688999999999997664 58999999999999999999999999999999999998876 688999999999932
Q ss_pred -ccCCc-chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 607 -ITLPA-PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 607 -~~lp~-~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
..+|+ .+. .+++|++|++..+..... .+..+..+++|+.|++++|.
T Consensus 90 l~~i~~~~f~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFD-GLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTT-TCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhC-CCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCCC
Confidence 24444 477 888899888877665433 44457888899999988876
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=6.9e-11 Score=113.89 Aligned_cols=121 Identities=18% Similarity=0.182 Sum_probs=92.4
Q ss_pred ccEEEecCCCCCcCCccccccccCcEEEcccCCccccChh--hcCCCCCcEEEccCCCCCcc-chhhccccccceeeecC
Q 045386 530 LRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSL--LCTLLNLETLEMPSSYIDQS-PEDIWMMQKLMHLNFGS 606 (706)
Q Consensus 530 L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~--i~~L~~L~~L~L~~~~~~~l-P~~l~~L~~L~~L~l~~ 606 (706)
-++++++++.++.+|..+.. +|++|++++|.++.+|.. ++.+++|++|+|++|.+..+ |..|..+++|++|+++.
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 37888999988888876654 889999999998888764 78899999999999988877 56788888888888832
Q ss_pred c---cCCc-chhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 607 I---TLPA-PPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 607 ~---~lp~-~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
. .+|. .+. .+++|++|++..+..... .+..++.+++|+.|++++|.
T Consensus 88 N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFL-GLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSST-TCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhc-CCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCC
Confidence 2 3333 366 777888887766655443 56677788888888887775
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=9.8e-11 Score=131.97 Aligned_cols=98 Identities=23% Similarity=0.269 Sum_probs=65.5
Q ss_pred cccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeecCc-
Q 045386 529 HLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFGSI- 607 (706)
Q Consensus 529 ~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~~~- 607 (706)
.|++|+|++|.++.+|. ++.+++|++|+|++|.++.+|..+++|++|++|+|++|.++.+| .++.+++|++|+++..
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 46777777777777765 77777777777777777777777777777777777777777776 6677777777776221
Q ss_pred --cC--CcchhcCCccCccccccccc
Q 045386 608 --TL--PAPPKNYSSSLKNLIFISAL 629 (706)
Q Consensus 608 --~l--p~~i~~~l~~L~~L~~~~~~ 629 (706)
.+ |..++ .+++|++|++..+.
T Consensus 520 l~~~~~p~~l~-~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 520 LQQSAAIQPLV-SCPRLVLLNLQGNS 544 (567)
T ss_dssp CCSSSTTGGGG-GCTTCCEEECTTSG
T ss_pred CCCCCCcHHHh-cCCCCCEEEecCCc
Confidence 23 55555 55555555554443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=8.1e-11 Score=110.67 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=91.4
Q ss_pred ccccCcEEEcccCCcc--ccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeecCccCCcchhcCCccCcccccc
Q 045386 549 NLFLLKYLKLNIPSLK--RLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFI 626 (706)
Q Consensus 549 ~L~~Lr~L~Ls~~~l~--~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~~~~lp~~i~~~l~~L~~L~~~ 626 (706)
..++|++|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls--------------------- 79 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELS--------------------- 79 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEE---------------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECc---------------------
Confidence 4578999999999888 8888888899999999999987776 556666666666662
Q ss_pred cccccCCCCchhcCCCCCCCeEEEEccCCcCccchH--HhcCCCCCCcEEEEeeCCCCCccccCC-----cccccccceE
Q 045386 627 SALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVS--KSLCELHKLECLKLVNESKPSWMVLSE-----YQFPPSLIQL 699 (706)
Q Consensus 627 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~l~~l~~L~~L~L~~~~~~~l~~l~~-----~~~p~~L~~L 699 (706)
.+..... .+..++.+++|+.|++++|. ...++ ..+..+++|+.|++++|.. ...+. ....++|+.|
T Consensus 80 ~N~l~~~-~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~l~~l~~L~~L~l~~N~l---~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 80 ENRIFGG-LDMLAEKLPNLTHLNLSGNK---LKDISTLEPLKKLECLKSLDLFNCEV---TNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp SCCCCSC-CCHHHHHCTTCCEEECBSSS---CCSSGGGGGGSSCSCCCEEECCSSGG---GTSTTHHHHHHTTCSSCCEE
T ss_pred CCcCchH-HHHHHhhCCCCCEEeccCCc---cCcchhHHHHhcCCCCCEEEeeCCcC---cchHHHHHHHHHhCccCcEe
Confidence 2222211 34445557788888888885 33333 7889999999999999643 33221 1224799999
Q ss_pred EecccC
Q 045386 700 SLSIVR 705 (706)
Q Consensus 700 ~L~~n~ 705 (706)
++++|.
T Consensus 153 ~l~~n~ 158 (168)
T 2ell_A 153 DGYDRE 158 (168)
T ss_dssp TTEETT
T ss_pred cCCCCC
Confidence 999985
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=8.6e-13 Score=128.02 Aligned_cols=141 Identities=17% Similarity=0.173 Sum_probs=104.8
Q ss_pred ccEEEecCC--CCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeee--c
Q 045386 530 LRVLNFGSA--VLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNF--G 605 (706)
Q Consensus 530 L~~L~L~~~--~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l--~ 605 (706)
|+.+.++++ .++.+|..++.+++|++|++++|.++.+| .+.++++|++|++++|.+..+|..+..+++|++|++ +
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 444455444 34556668889999999999999998888 888899999999999988889988888899999998 2
Q ss_pred Cc-cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHH----------hcCCCCCCcEE
Q 045386 606 SI-TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSK----------SLCELHKLECL 674 (706)
Q Consensus 606 ~~-~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~----------~l~~l~~L~~L 674 (706)
.. .+| .++ .+++|++|++..+.......+..+..+++|+.|++++|. .....|. .+..+++|+.|
T Consensus 104 ~l~~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 104 QIASLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp ECCCHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH--HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCCcCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc--cccccccccchHHHHHHHHHhCCCcEEE
Confidence 22 444 677 888888888777665332122468889999999998885 3333222 37778888888
Q ss_pred E
Q 045386 675 K 675 (706)
Q Consensus 675 ~ 675 (706)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 6
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=7.7e-12 Score=141.02 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=50.7
Q ss_pred CcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhccccccceeeecCccCCcchhcCCccCcccccccccccC
Q 045386 553 LKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPS 632 (706)
Q Consensus 553 Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L~l~~~~lp~~i~~~l~~L~~L~~~~~~~~~ 632 (706)
|++|+|++|.++.+|. +++|++|++|+|++|.+..+|..++.+++|++|++ ..+....
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L---------------------s~N~l~~ 500 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA---------------------SDNALEN 500 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC---------------------CSSCCCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC---------------------CCCCCCC
Confidence 5555555555555553 55555555555555555555555555555555554 3333221
Q ss_pred CCCchhcCCCCCCCeEEEEccCCcCccch-HHhcCCCCCCcEEEEeeC
Q 045386 633 SCTPDILDRLPSVRTLRISGDLSYYQSGV-SKSLCELHKLECLKLVNE 679 (706)
Q Consensus 633 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~ 679 (706)
.| .++.+++|+.|++++|. ..+.. |..++.+++|+.|+|++|
T Consensus 501 --lp-~l~~l~~L~~L~Ls~N~--l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 501 --VD-GVANLPRLQELLLCNNR--LQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp --CG-GGTTCSSCCEEECCSSC--CCSSSTTGGGGGCTTCCEEECTTS
T ss_pred --Cc-ccCCCCCCcEEECCCCC--CCCCCCcHHHhcCCCCCEEEecCC
Confidence 22 45555555555555553 22222 555555666666666553
No 123
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.09 E-value=2e-10 Score=131.55 Aligned_cols=173 Identities=20% Similarity=0.163 Sum_probs=119.3
Q ss_pred CcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccC--hhhcCCCCCcEEEccCCCCCccc-hhhcccccccee
Q 045386 526 KFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLP--SLLCTLLNLETLEMPSSYIDQSP-EDIWMMQKLMHL 602 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP--~~i~~L~~L~~L~L~~~~~~~lP-~~l~~L~~L~~L 602 (706)
.+..|+.|+++.+.+..++..+..+.+|++++++++.....+ ..+..+.+|+.++++.|.+..++ ..+..+++|+.|
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 444555555555555444555566666666666665544322 23567777888888887666554 466778888888
Q ss_pred eecCc-----cCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEe
Q 045386 603 NFGSI-----TLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLV 677 (706)
Q Consensus 603 ~l~~~-----~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 677 (706)
++... ..|..+. .+++|++|++..+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|+|+
T Consensus 475 ~Ls~N~~~~~~~~~~~~-~l~~L~~L~Ls~N~L~~l-~~~~f~~l~~L~~L~Ls~N~--l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNN--FFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp ECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC--CCBCCCGGGTTCTTCCEEECT
T ss_pred hhhhcccccccCchhhh-hccccCEEECCCCccCCc-ChHHHcCCCCCCEEECCCCc--CCCCChhHHhCCCCCCEEECC
Confidence 88321 3566778 888999999887765444 67778999999999999886 555556778899999999999
Q ss_pred eCCCCCccccCCc---ccccccceEEecccC
Q 045386 678 NESKPSWMVLSEY---QFPPSLIQLSLSIVR 705 (706)
Q Consensus 678 ~~~~~~l~~l~~~---~~p~~L~~L~L~~n~ 705 (706)
+|.. ..+.+. .+|++|+.|+|++|.
T Consensus 551 ~N~l---~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 551 LNHI---MTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TSCC---CBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCcC---CCCCHHHHHhhhCcCCEEEeeCCC
Confidence 8543 333222 335789999999884
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.09 E-value=1.6e-10 Score=122.57 Aligned_cols=175 Identities=13% Similarity=0.024 Sum_probs=110.4
Q ss_pred ccccCcccccEEEecCCCCC-cCCc-cccccccCcE-EEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLD-QFPP-GLENLFLLKY-LKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMM 596 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~-~lp~-~~~~L~~Lr~-L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L 596 (706)
..|.++++|++|+|++|.+. .+|. .|.++++|.. +.+++|++..+|+ .+..+++|++|++++|.+..+|. .+...
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~ 127 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence 35677888888888888764 4553 4667777664 5556677777754 46778888888888887777765 44455
Q ss_pred cccceeee-c---CccCCcc-hhcCCc-cCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHH-hcCCCC
Q 045386 597 QKLMHLNF-G---SITLPAP-PKNYSS-SLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSK-SLCELH 669 (706)
Q Consensus 597 ~~L~~L~l-~---~~~lp~~-i~~~l~-~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~-~l~~l~ 669 (706)
.++..|++ . ...+|.. +. .+. .++.|.+..+.... .+.......+|++|.+..+. ..+.+|. .+..++
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~-~~~~~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n--~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFV-GLSFESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNN--NLEELPNDVFHGAS 202 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSST-TSBSSCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCT--TCCCCCTTTTTTEE
T ss_pred chhhhhhhccccccccccccchh-hcchhhhhhccccccccC--CChhhccccchhHHhhccCC--cccCCCHHHhccCc
Confidence 66666766 2 1234433 33 443 46667665544321 34444455677777776543 5556654 568888
Q ss_pred CCcEEEEeeCCCCCccccCCcccccccceEEecccC
Q 045386 670 KLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 670 ~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n~ 705 (706)
+|+.|++++| .+..++...+ .+|+.|.+.+|.
T Consensus 203 ~L~~LdLs~N---~l~~lp~~~~-~~L~~L~~l~~~ 234 (350)
T 4ay9_X 203 GPVILDISRT---RIHSLPSYGL-ENLKKLRARSTY 234 (350)
T ss_dssp CCSEEECTTS---CCCCCCSSSC-TTCCEEECTTCT
T ss_pred ccchhhcCCC---CcCccChhhh-ccchHhhhccCC
Confidence 9999999884 4555543333 577777766653
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.05 E-value=2e-10 Score=105.61 Aligned_cols=120 Identities=21% Similarity=0.184 Sum_probs=96.0
Q ss_pred CCceeEEEEeccCC---CCceEEeeCCCccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccc-cChhhcC
Q 045386 497 FANVKRYIILEHLT---EGDHLAVIDCENFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKR-LPSLLCT 572 (706)
Q Consensus 497 ~~~~r~ls~~~~~~---~~~~ll~f~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~-lP~~i~~ 572 (706)
+..++++.+..+.. ..+ ..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~--------~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE--------GLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC--------SCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcCChhHHH--------HHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 34566666655411 122 4568899999999999999987 778999999999999999997 7877888
Q ss_pred CCCCcEEEccCCCCCccc--hhhccccccceeeecCc---cCCc----chhcCCccCcccccc
Q 045386 573 LLNLETLEMPSSYIDQSP--EDIWMMQKLMHLNFGSI---TLPA----PPKNYSSSLKNLIFI 626 (706)
Q Consensus 573 L~~L~~L~L~~~~~~~lP--~~l~~L~~L~~L~l~~~---~lp~----~i~~~l~~L~~L~~~ 626 (706)
+++|++|++++|.+..+| ..++.+++|++|++.+. .+|. .++ .+++|+.|++.
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFK-LLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHH-HCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHH-HCCCcccccCC
Confidence 999999999999999876 78999999999999322 4554 466 78888887753
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.02 E-value=9.8e-11 Score=124.78 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=87.8
Q ss_pred ccccEEEecCCCCCcCC-ccc----ccc-ccCcEEEcccCCccccChh-----hcC-CCCCcEEEccCCCCC-----ccc
Q 045386 528 KHLRVLNFGSAVLDQFP-PGL----ENL-FLLKYLKLNIPSLKRLPSL-----LCT-LLNLETLEMPSSYID-----QSP 590 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp-~~~----~~L-~~Lr~L~Ls~~~l~~lP~~-----i~~-L~~L~~L~L~~~~~~-----~lP 590 (706)
+.|++|+|++|.++..+ ..+ ..+ ++|++|+|++|.++..+.. +.. ..+|++|+|++|.++ .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 66666666666665332 222 233 5666666666666654431 222 246666666666555 344
Q ss_pred hhhcccc-ccceeeecCccC---C-c----chhcCC-ccCcccccccccccCCC---CchhcCC-CCCCCeEEEEccCCc
Q 045386 591 EDIWMMQ-KLMHLNFGSITL---P-A----PPKNYS-SSLKNLIFISALNPSSC---TPDILDR-LPSVRTLRISGDLSY 656 (706)
Q Consensus 591 ~~l~~L~-~L~~L~l~~~~l---p-~----~i~~~l-~~L~~L~~~~~~~~~~~---~~~~l~~-L~~L~~L~l~~~~~~ 656 (706)
..+..++ +|++|+++...+ + . .+. .+ ++|++|++..+...... .+..+.. .++|+.|++++|.-.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLA-SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHH-hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 4445554 666666622211 1 1 223 33 36666666555433210 1223333 246777777666511
Q ss_pred --CccchHHhcCCCCCCcEEEEeeCCCCC-----ccccC-CcccccccceEEecccC
Q 045386 657 --YQSGVSKSLCELHKLECLKLVNESKPS-----WMVLS-EYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 657 --~~~~~~~~l~~l~~L~~L~L~~~~~~~-----l~~l~-~~~~p~~L~~L~L~~n~ 705 (706)
....+...+..+++|+.|++++|.... +..+. ...-.++|+.|+|++|.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 112334455666677777777653100 11110 11123567777777764
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.02 E-value=1.5e-10 Score=123.36 Aligned_cols=181 Identities=14% Similarity=0.058 Sum_probs=113.7
Q ss_pred cccCcc-cccEEEecCCCCCcC-Ccccccc-----ccCcEEEcccCCccccChh-----hcCC-CCCcEEEccCCCCCcc
Q 045386 523 FCKKFK-HLRVLNFGSAVLDQF-PPGLENL-----FLLKYLKLNIPSLKRLPSL-----LCTL-LNLETLEMPSSYIDQS 589 (706)
Q Consensus 523 ~~~~l~-~L~~L~L~~~~l~~l-p~~~~~L-----~~Lr~L~Ls~~~l~~lP~~-----i~~L-~~L~~L~L~~~~~~~l 589 (706)
.+.+++ +|++|+|++|.++.. +..+..+ ++|++|+|++|.++..+.. +..+ ++|++|+|++|.++..
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 355666 788888888887744 4556554 8888888888888755433 4444 7888888888877766
Q ss_pred ch-h----hcc-ccccceeeecCcc--------CCcchhcCCc-cCcccccccccccCCCCchh----cCCC-CCCCeEE
Q 045386 590 PE-D----IWM-MQKLMHLNFGSIT--------LPAPPKNYSS-SLKNLIFISALNPSSCTPDI----LDRL-PSVRTLR 649 (706)
Q Consensus 590 P~-~----l~~-L~~L~~L~l~~~~--------lp~~i~~~l~-~L~~L~~~~~~~~~~~~~~~----l~~L-~~L~~L~ 649 (706)
+. . +.. .++|++|+++... ++..+. .+. +|++|++..+..... .+.. +..+ ++|+.|+
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASK-NCAELAKFLASIPASVTSLD 202 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGS-CHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchh-hHHHHHHHHHhCCCCCCEEE
Confidence 54 2 233 2588888883322 233344 444 788888777655433 3333 3444 5888888
Q ss_pred EEccC--CcCccchHHhcCCC-CCCcEEEEeeCCCCCcc--ccC-CcccccccceEEecccC
Q 045386 650 ISGDL--SYYQSGVSKSLCEL-HKLECLKLVNESKPSWM--VLS-EYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 650 l~~~~--~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~l~--~l~-~~~~p~~L~~L~L~~n~ 705 (706)
+++|. ......++..+... ++|+.|+|++|...... .+. .....++|+.|+|++|+
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 88875 11112366666664 48999999886542111 111 11224679999998874
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=4.9e-10 Score=107.86 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=104.1
Q ss_pred CcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchh--hccccccceeeecCc---cC-CcchhcCCccCcccccc
Q 045386 553 LKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPED--IWMMQKLMHLNFGSI---TL-PAPPKNYSSSLKNLIFI 626 (706)
Q Consensus 553 Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~--l~~L~~L~~L~l~~~---~l-p~~i~~~l~~L~~L~~~ 626 (706)
-++++++++.++.+|..+.. +|++|++++|.+..+|.. +..+++|++|++... .+ |..++ .+++|++|++.
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECC
Confidence 38999999999999987754 899999999999999874 899999999999322 33 66788 99999999988
Q ss_pred cccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCC
Q 045386 627 SALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESK 681 (706)
Q Consensus 627 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 681 (706)
.+..... .+..++.+++|+.|++++|. ..+..|..+..+++|+.|++++|..
T Consensus 87 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 87 ENKIKEI-SNKMFLGLHQLKTLNLYDNQ--ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEE-CSSSSTTCTTCCEEECCSSC--CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcCCcc-CHHHhcCCCCCCEEECCCCc--CCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 8776544 56668999999999999997 6667788999999999999999653
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.00 E-value=4.9e-10 Score=106.19 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=90.7
Q ss_pred ccCc-ccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhh-cCCCCCcEEEccCCCCCccch--hhcccccc
Q 045386 524 CKKF-KHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLL-CTLLNLETLEMPSSYIDQSPE--DIWMMQKL 599 (706)
Q Consensus 524 ~~~l-~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i-~~L~~L~~L~L~~~~~~~lP~--~l~~L~~L 599 (706)
+..+ ++|++|++++|.++.+ ..++.+++|++|++++|.++.+|+.+ ..+++|++|++++|.++.+|. .+..+++|
T Consensus 37 ~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 37 LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115 (176)
T ss_dssp GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCC
Confidence 3344 4999999999999987 67899999999999999999999766 899999999999999999998 89999999
Q ss_pred ceeeecC---ccCCcc----hhcCCccCcccccccccc
Q 045386 600 MHLNFGS---ITLPAP----PKNYSSSLKNLIFISALN 630 (706)
Q Consensus 600 ~~L~l~~---~~lp~~----i~~~l~~L~~L~~~~~~~ 630 (706)
++|++.+ ..+|.. ++ .+++|+.|++..+..
T Consensus 116 ~~L~l~~N~i~~~~~~~~~~~~-~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 116 TYLCILRNPVTNKKHYRLYVIY-KVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSSGGGGSTTHHHHHHH-HCTTCSEETTEECCH
T ss_pred CEEEecCCCCCCcHhHHHHHHH-HCCccceeCCCcCCH
Confidence 9999933 266765 78 899999999876653
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=9.7e-10 Score=105.87 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=85.2
Q ss_pred ccccEEEecCCCCCcCCccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccccceeeec
Q 045386 528 KHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFG 605 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~ 605 (706)
+.|+.|+|++|.++.+|..+..+++|++|+|++|.|+.+|. .+.++++|++|+|++|.+..+|. .|..+++|++|++.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 57899999999999999889999999999999999998875 48899999999999998888876 68899999999992
Q ss_pred ---CccCCcc-hhcCCccCcccccccccc
Q 045386 606 ---SITLPAP-PKNYSSSLKNLIFISALN 630 (706)
Q Consensus 606 ---~~~lp~~-i~~~l~~L~~L~~~~~~~ 630 (706)
...+|.+ +. .+++|+.|++..+..
T Consensus 111 ~N~l~~~~~~~~~-~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFN-DLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTT-TCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhh-cCccccEEEeCCCCe
Confidence 2256664 66 788888888766544
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=2.6e-09 Score=101.15 Aligned_cols=122 Identities=23% Similarity=0.265 Sum_probs=86.5
Q ss_pred cccEEEecCCCCCcCCccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccchh-hccccccceeeecC
Q 045386 529 HLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHLNFGS 606 (706)
Q Consensus 529 ~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L~l~~ 606 (706)
..+.++++++.++.+|..+. ++|++|++++|.++.+|.. +..+++|++|++++|.+..+|.. +..+++|++|+++.
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35678888888888875543 6888888888888877765 57888888888888888887764 57788888888822
Q ss_pred ---ccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccC
Q 045386 607 ---ITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 607 ---~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 654 (706)
..+|.. +. .+++|++|++..+..... .+..+..+++|+.|++++|.
T Consensus 86 N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFD-KLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTT-TCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhh-CCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence 244544 45 677777777666554322 33345777788888887775
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.97 E-value=2e-09 Score=114.06 Aligned_cols=200 Identities=16% Similarity=0.114 Sum_probs=136.6
Q ss_pred CCceeEEEEecc---------CCCCceE--EeeCCC--------ccccCcccccE-EEecCCCCCcCC-ccccccccCcE
Q 045386 497 FANVKRYIILEH---------LTEGDHL--AVIDCE--------NFCKKFKHLRV-LNFGSAVLDQFP-PGLENLFLLKY 555 (706)
Q Consensus 497 ~~~~r~ls~~~~---------~~~~~~l--l~f~~~--------~~~~~l~~L~~-L~L~~~~l~~lp-~~~~~L~~Lr~ 555 (706)
+..+++|.+..+ ..++++| +.+..+ ..|.+++.|.. +.+++|+++.+| ..+..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 456788888776 1234444 333222 45778877664 677778898774 66889999999
Q ss_pred EEcccCCccccChh-hcCCCCCcEEEccCC-CCCccch-hhcccc-ccceeeec---CccCCcchhcCCccCcccccccc
Q 045386 556 LKLNIPSLKRLPSL-LCTLLNLETLEMPSS-YIDQSPE-DIWMMQ-KLMHLNFG---SITLPAPPKNYSSSLKNLIFISA 628 (706)
Q Consensus 556 L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~-~~~~lP~-~l~~L~-~L~~L~l~---~~~lp~~i~~~l~~L~~L~~~~~ 628 (706)
|++++|.+..+|.. +....++.+|++.++ .+..+|. .+..+. .|+.|+++ ...+|.+.. ...+|++|.+..+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccC
Confidence 99999999988754 456778888998775 7888876 455554 68888882 236787777 7788888888766
Q ss_pred cccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCCcccccccceEEeccc
Q 045386 629 LNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIV 704 (706)
Q Consensus 629 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n 704 (706)
+....-....++.+++|+.|++++|. ...+|. ..+.+|+.|.+.++. .+..++...-.++|+.+++.++
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~---l~~lp~--~~~~~L~~L~~l~~~--~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTR---IHSLPS--YGLENLKKLRARSTY--NLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSC---CCCCCS--SSCTTCCEEECTTCT--TCCCCCCTTTCCSCCEEECSCH
T ss_pred CcccCCCHHHhccCcccchhhcCCCC---cCccCh--hhhccchHhhhccCC--CcCcCCCchhCcChhhCcCCCC
Confidence 65554233457899999999999884 445554 235677777766643 2333332222368888888653
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=9.3e-12 Score=120.67 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=103.3
Q ss_pred cccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccchhhcccccccee
Q 045386 523 FCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPEDIWMMQKLMHL 602 (706)
Q Consensus 523 ~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~~L 602 (706)
.+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+| .++.+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 6788999999999999999988 899999999999999999999988888999999999999999988 69999999999
Q ss_pred eecCc---cCCc--chhcCCccCcccccccccccCCCCc----------hhcCCCCCCCeEE
Q 045386 603 NFGSI---TLPA--PPKNYSSSLKNLIFISALNPSSCTP----------DILDRLPSVRTLR 649 (706)
Q Consensus 603 ~l~~~---~lp~--~i~~~l~~L~~L~~~~~~~~~~~~~----------~~l~~L~~L~~L~ 649 (706)
++... .+|. .+. .+++|++|++..+..... .+ ..+..+++|+.|+
T Consensus 121 ~l~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYND-YKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEEECCCHHHHHHHT-TTTTCSEEEECSCHHHHH-HHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCCCcCCchhHHHHHh-cCCCCCEEEecCCccccc-cccccchHHHHHHHHHhCCCcEEEC
Confidence 99332 3343 577 899999999876654221 11 2378899999887
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.94 E-value=1.7e-10 Score=126.99 Aligned_cols=178 Identities=17% Similarity=0.085 Sum_probs=81.2
Q ss_pred ccCcccccEEEecCCCCCc-CCcccc-ccc----cCcEEEcccCCcc-----ccChhhcCCCCCcEEEccCCCCCcc-ch
Q 045386 524 CKKFKHLRVLNFGSAVLDQ-FPPGLE-NLF----LLKYLKLNIPSLK-----RLPSLLCTLLNLETLEMPSSYIDQS-PE 591 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~-lp~~~~-~L~----~Lr~L~Ls~~~l~-----~lP~~i~~L~~L~~L~L~~~~~~~l-P~ 591 (706)
+..+++|++|+|++|.++. .+..+. .+. +|++|+|++|.++ .+|..+.++++|++|++++|.+... +.
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 3444555555555555442 122221 222 4555555555544 3444555555555555555544321 11
Q ss_pred hhc-----cccccceeeecCcc--------CCcchhcCCccCcccccccccccCCCCchhcC-----CCCCCCeEEEEcc
Q 045386 592 DIW-----MMQKLMHLNFGSIT--------LPAPPKNYSSSLKNLIFISALNPSSCTPDILD-----RLPSVRTLRISGD 653 (706)
Q Consensus 592 ~l~-----~L~~L~~L~l~~~~--------lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~-----~L~~L~~L~l~~~ 653 (706)
.+. .+++|++|++.... ++..+. .+++|++|++..+..... .+..+. .+++|+.|++++|
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR-AKPDFKELTVSNNDINEA-GVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-HCTTCCEEECCSSBCHHH-HHHHHHHHHHHSCCCCCEEECTTS
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh-hCCCCCEEECcCCCcchH-HHHHHHHHHhcCCCCceEEEccCC
Confidence 111 13345555552111 223344 455555555544432111 112221 2446666666665
Q ss_pred CCcCcc----chHHhcCCCCCCcEEEEeeCCCC--CccccCC--cccccccceEEecccC
Q 045386 654 LSYYQS----GVSKSLCELHKLECLKLVNESKP--SWMVLSE--YQFPPSLIQLSLSIVR 705 (706)
Q Consensus 654 ~~~~~~----~~~~~l~~l~~L~~L~L~~~~~~--~l~~l~~--~~~p~~L~~L~L~~n~ 705 (706)
. ... .++..+..+++|+.|++++|... .+..+.. ....++|++|+|++|+
T Consensus 210 ~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 210 G--VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp C--CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred C--CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 4 221 25566666677777777775321 0111100 0113678888888774
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.89 E-value=2.5e-10 Score=125.68 Aligned_cols=153 Identities=19% Similarity=0.122 Sum_probs=84.2
Q ss_pred ccCcccccEEEecCCCCCcC-----Ccc-ccccccCcEEEcccCCccc-----cChhhcCCCCCcEEEccCCCCCccc-h
Q 045386 524 CKKFKHLRVLNFGSAVLDQF-----PPG-LENLFLLKYLKLNIPSLKR-----LPSLLCTLLNLETLEMPSSYIDQSP-E 591 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~l-----p~~-~~~L~~Lr~L~Ls~~~l~~-----lP~~i~~L~~L~~L~L~~~~~~~lP-~ 591 (706)
+..+++|+.|++++|.++.. +.. +..+++|++|++++|.++. +|..+.++++|++|++++|.+...+ .
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 44566677777776665521 122 2246667777777766664 5666666667777777766554221 1
Q ss_pred hhcc-----ccccceeeecCcc--------CCcchhcCCccCcccccccccccCCCCchhcC----C-CCCCCeEEEEcc
Q 045386 592 DIWM-----MQKLMHLNFGSIT--------LPAPPKNYSSSLKNLIFISALNPSSCTPDILD----R-LPSVRTLRISGD 653 (706)
Q Consensus 592 ~l~~-----L~~L~~L~l~~~~--------lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~----~-L~~L~~L~l~~~ 653 (706)
.+.. .++|++|++.... +|..+. .+++|++|++..+..... .+..+. . .++|+.|++++|
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA-QNRFLLELQISNNRLEDA-GVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-HCSSCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh-hCCCccEEEccCCccccc-cHHHHHHHHcCCCCceEEEECCCC
Confidence 2221 2466777662221 334455 566667666655533221 122222 1 556777777766
Q ss_pred CCcCcc----chHHhcCCCCCCcEEEEeeCC
Q 045386 654 LSYYQS----GVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 654 ~~~~~~----~~~~~l~~l~~L~~L~L~~~~ 680 (706)
. ... .++..+..+++|+.|++++|.
T Consensus 381 ~--i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 381 D--VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp C--CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred C--CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 4 332 566666667777777777754
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.88 E-value=2.9e-10 Score=129.37 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=69.2
Q ss_pred cCcccccEEEecCCCCC-----cCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCC-CC---Cccchhhcc
Q 045386 525 KKFKHLRVLNFGSAVLD-----QFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSS-YI---DQSPEDIWM 595 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~-----~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~-~~---~~lP~~l~~ 595 (706)
.+++.|+.|++++|.++ .++..+.++++|++|++++|.+..+|..+.++++|+.|+++.+ .. ...+..+..
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 34455555555555543 2223334455555555555555555555555555555555432 10 122223334
Q ss_pred ccccceeeec---CccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCc
Q 045386 596 MQKLMHLNFG---SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLE 672 (706)
Q Consensus 596 L~~L~~L~l~---~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 672 (706)
+++|+.|.+. ...+|..+. .+++|++|++..+..........++.+++|+.|++..+. ....++..+..+++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCC
T ss_pred cccccccCccccchhHHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhCCCCC
Confidence 4444444441 113344444 555666666555442111011224566666666665332 2233333334455666
Q ss_pred EEEEe
Q 045386 673 CLKLV 677 (706)
Q Consensus 673 ~L~L~ 677 (706)
+|+++
T Consensus 346 ~L~L~ 350 (592)
T 3ogk_B 346 RLRIE 350 (592)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 66666
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.85 E-value=5.9e-09 Score=98.56 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=38.1
Q ss_pred cEEEecCCCCCcCCccccccccCcEEEcccCCcccc-ChhhcCCCCCcEEEccCCCCCccchh-hccccccceeee
Q 045386 531 RVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRL-PSLLCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHLNF 604 (706)
Q Consensus 531 ~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~l-P~~i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L~l 604 (706)
+.++++++.++.+|..+. .+|++|+|++|.++.+ |..+.++++|++|+|++|.+..+|.. +.++++|++|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 445555555555554443 4555555555555554 23345555555555555555555543 345555555555
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=6.7e-09 Score=97.73 Aligned_cols=96 Identities=17% Similarity=0.283 Sum_probs=62.5
Q ss_pred cccEEEecCCCCCcCCccccccccCcEEEcccCCcccc-ChhhcCCCCCcEEEccCCCCCccchh-hccccccceeeecC
Q 045386 529 HLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRL-PSLLCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHLNFGS 606 (706)
Q Consensus 529 ~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~l-P~~i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L~l~~ 606 (706)
..+.|++++|.++.+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|.+..+|.. |..+++|++|+++.
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35677788877777776653 6778888888877776 44577778888888888877777764 46677777777622
Q ss_pred ---ccCCcc-hhcCCccCccccccc
Q 045386 607 ---ITLPAP-PKNYSSSLKNLIFIS 627 (706)
Q Consensus 607 ---~~lp~~-i~~~l~~L~~L~~~~ 627 (706)
..+|+. +. .+++|++|++..
T Consensus 88 N~l~~~~~~~~~-~l~~L~~L~L~~ 111 (170)
T 3g39_A 88 NQLKSIPRGAFD-NLKSLTHIWLLN 111 (170)
T ss_dssp SCCCCCCTTTTT-TCTTCCEEECCS
T ss_pred CccCEeCHHHhc-CCCCCCEEEeCC
Confidence 133332 44 455555554443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=9.7e-09 Score=97.02 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=72.6
Q ss_pred ccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccchh-hccccccceeee
Q 045386 528 KHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPED-IWMMQKLMHLNF 604 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~~-l~~L~~L~~L~l 604 (706)
+.|++|+|++|.++.+ |..+..+++|++|+|++|.|+.+|.. +.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 7899999999999977 56789999999999999999999987 48999999999999999999985 889999999999
Q ss_pred cCc
Q 045386 605 GSI 607 (706)
Q Consensus 605 ~~~ 607 (706)
.+.
T Consensus 113 ~~N 115 (174)
T 2r9u_A 113 YNN 115 (174)
T ss_dssp CSS
T ss_pred CCC
Confidence 433
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=1.8e-08 Score=95.27 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=97.1
Q ss_pred cCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch-hhccccccceeeecC---ccCCcc-hhcCCccCcccccc
Q 045386 552 LLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFGS---ITLPAP-PKNYSSSLKNLIFI 626 (706)
Q Consensus 552 ~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~~---~~lp~~-i~~~l~~L~~L~~~ 626 (706)
+.+.++++++.++.+|..+. ++|++|++++|.+..+|. .+..+++|++|++.. ..+|.. +. .+++|++|++.
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD-KLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECC
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc-CCCccCEEECC
Confidence 46889999999999996654 699999999999998887 468999999999932 256655 57 89999999987
Q ss_pred cccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCC
Q 045386 627 SALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 627 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
.+..... .+..++.+++|+.|++++|. .....+..+..+++|+.|++++|.
T Consensus 85 ~N~l~~~-~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 85 ENKLQSL-PNGVFDKLTQLKELALDTNQ--LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCCCC-CTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcccc-CHHHhhCCcccCEEECcCCc--ceEeCHHHhcCCcccCEEEecCCC
Confidence 7765433 45557899999999999885 333333446789999999999864
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.72 E-value=2.3e-08 Score=94.07 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=72.7
Q ss_pred cccccEEEecCCCCCcC-CccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccch-hhccccccceee
Q 045386 527 FKHLRVLNFGSAVLDQF-PPGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLN 603 (706)
Q Consensus 527 l~~L~~L~L~~~~l~~l-p~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~ 603 (706)
.+.|++|+|++|.++.+ |..+..+++|++|+|++|.|+.+|.. +.++++|++|+|++|.+..+|. .+..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 37899999999999977 56799999999999999999999886 5899999999999999999988 488999999999
Q ss_pred ecCc
Q 045386 604 FGSI 607 (706)
Q Consensus 604 l~~~ 607 (706)
+...
T Consensus 109 L~~N 112 (170)
T 3g39_A 109 LLNN 112 (170)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 9433
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=2.9e-08 Score=106.28 Aligned_cols=137 Identities=15% Similarity=0.008 Sum_probs=95.9
Q ss_pred cccccccHHHHHHHHhc--CCCCcEEEEEEcCCCchhhHHHHHHHcCCCcccc------C--CcceEEEecCCC-CHHHH
Q 045386 187 VSEFERGREELFDLLIE--GPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFY------F--DCLAWVRVSIGY-YFGKI 255 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F--~~~~wv~vs~~~-~~~~i 255 (706)
++||+++++++.+++.. .....+.+.|+|++|+||||||+.+++ ..... + ...+|+..+... +...+
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 99999999999988764 223456899999999999999999998 44222 2 235677666666 88889
Q ss_pred HHHHHHhcCCCCCCccccCC-CHHHHHHHHHHHhcCCceEEEEccCCCChhh---HHH-HHhhcCCCCCCcEEEEeeCCc
Q 045386 256 LDDIINSLMPPSRARVIIGE-DYHLKKSILRDYLTNKKYFIVRDDVFNDSDI---WDD-LEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~---~~~-l~~~l~~~~~gs~IivTTR~~ 330 (706)
+..++.++.+... .... +...+...+.+.+..++.+|||||++. ... .+. +...+... .+..||+||+..
T Consensus 100 ~~~l~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~-l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 100 LSSLAGKLTGFSV---PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDT-LVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHCSCC---CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHH-HHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred HHHHHHHhcCCCC---CCCCCCHHHHHHHHHHHhccCCCEEEEECHHH-hccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 9999988843221 1122 556778888888888777999999976 221 222 22222222 678899998875
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.68 E-value=1.2e-07 Score=101.44 Aligned_cols=138 Identities=20% Similarity=0.172 Sum_probs=100.0
Q ss_pred cccccccHHHHHHHHhc----CCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC-CcceEEEecCCCCHHHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIE----GPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF-DCLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~il~ 261 (706)
++||+.+++++.+++.. ..+..+.+.|+|.+|+||||||+.+++ ...... -..+|+..+...+...+...++.
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 99999999999998875 222334899999999999999999998 443321 23566666677778899999999
Q ss_pred hcCCCCCCccccCC-CHHHHHHHHHHHhc--CCceEEEEccCCC-ChhhHHHHHhhcCCCC----CCcEEEEeeCCc
Q 045386 262 SLMPPSRARVIIGE-DYHLKKSILRDYLT--NKKYFIVRDDVFN-DSDIWDDLEEVLPDKQ----NGSRVLILVTDP 330 (706)
Q Consensus 262 ~l~~~~~~~~~~~~-~~~~~~~~l~~~L~--~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~----~gs~IivTTR~~ 330 (706)
.++.... ... +...+...+.+.+. +++.+||||+++. +......+...+.... .+..||+||+..
T Consensus 97 ~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 97 SLNIPFP----RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HTTCCCC----SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HhCccCC----CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 9875432 112 56667777777664 5688999999987 4566666666664321 466788888765
No 144
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.66 E-value=3.8e-08 Score=103.73 Aligned_cols=253 Identities=11% Similarity=0.026 Sum_probs=146.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCC------CHHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGY------YFGKILDDII 260 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~i~~~il 260 (706)
++||+.+.+.+.+++..+ +++.|+|++|+|||||++++.+. . + .+|+.+.... +...++..+.
T Consensus 14 ~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 14 IFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp SCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHHHHHHH
Confidence 999999999999998753 68999999999999999999984 2 1 5666654432 5666777776
Q ss_pred HhcCCC------------C-CCccccCC-CHHHHHHHHHHHhcC-CceEEEEccCCC-Ch-------hhHHHHHhhcCCC
Q 045386 261 NSLMPP------------S-RARVIIGE-DYHLKKSILRDYLTN-KKYFIVRDDVFN-DS-------DIWDDLEEVLPDK 317 (706)
Q Consensus 261 ~~l~~~------------~-~~~~~~~~-~~~~~~~~l~~~L~~-kr~LlVlDdvw~-~~-------~~~~~l~~~l~~~ 317 (706)
..+... . ........ +..++...+.+.... ++++||+||++. +. ..+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~- 161 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS- 161 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-
Confidence 665430 0 00000112 667777777776653 389999999987 21 223434333322
Q ss_pred CCCcEEEEeeCCcce------------------e-------------------ecc--c------------cccCCCccc
Q 045386 318 QNGSRVLILVTDPIL------------------L-------------------TFF--E------------LEHGGIIPL 346 (706)
Q Consensus 318 ~~gs~IivTTR~~~v------------------~-------------------af~--~------------~~c~~glPL 346 (706)
..+.++|+|++...+ . .|. . ..| +|.|+
T Consensus 162 ~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t-gG~P~ 240 (350)
T 2qen_A 162 LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELL-DGIPG 240 (350)
T ss_dssp CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH-TTCHH
T ss_pred cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-CCCHH
Confidence 246788988765321 0 110 0 014 88888
Q ss_pred eeeeccccccc-CCHHHH-HHHHHHhCcCcccCccchhhhhhcccccccccCCCcchHHHhhhhccCCCCcEEchHhHHH
Q 045386 347 YSVPVGGPLIR-LKHEAW-QFFILHYGSAPLVNYMDEKVVLTLLSRICSVLELPFHLKVCCLYLCVFRPGIEMSTRQLCQ 424 (706)
Q Consensus 347 ai~~~g~~L~~-~~~~~w-~~~~~~~~~~~l~~~~~~~~~~~~~~~i~sy~~L~~~lk~cfl~~s~Fp~~~~i~~~~li~ 424 (706)
++..++..+.. .....+ ..+.+..... ....+.. +.++ ++..+..+..+|. + ..+...+..
T Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~-l~~~--~~~~~~~l~~la~---g-~~~~~~l~~ 303 (350)
T 2qen_A 241 WLVVFGVEYLRNGDFGRAMKRTLEVAKGL----------IMGELEE-LRRR--SPRYVDILRAIAL---G-YNRWSLIRD 303 (350)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH----------HHHHHHH-HHHH--CHHHHHHHHHHHT---T-CCSHHHHHH
T ss_pred HHHHHHHHHhccccHhHHHHHHHHHHHHH----------HHHHHHH-HHhC--ChhHHHHHHHHHh---C-CCCHHHHHH
Confidence 88777654322 111111 1111100000 0000100 2222 6778888888887 2 135555555
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHhcCceeeeecCCCCCeeEEE-cChhHHHHHH
Q 045386 425 LWIAEGFVPYNGEETAEHYLKELIHRGFIQVSKRRAGGTIKACY-VPSFVYTSLG 478 (706)
Q Consensus 425 ~W~a~g~i~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-mHdlv~~~~~ 478 (706)
...+.. - .........+++.|++.+++.... ..|. .|++++.+.+
T Consensus 304 ~~~~~~-~-~~~~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKG-T-KIPEPRLYALLENLKKMNWIVEED-------NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTT-C-CCCHHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHHHT
T ss_pred HHHHHh-C-CCCHHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHHHc
Confidence 442221 0 112567789999999999998752 2344 5778877653
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.62 E-value=1.8e-08 Score=114.54 Aligned_cols=178 Identities=13% Similarity=0.030 Sum_probs=90.1
Q ss_pred ccCcccccEEEecCCCCCcCCccccccccCcEEEccc---------------------------CCccccChhhcCCCCC
Q 045386 524 CKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNI---------------------------PSLKRLPSLLCTLLNL 576 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~---------------------------~~l~~lP~~i~~L~~L 576 (706)
+.++++|+.|++++|.+..+|..+..+++|++|++++ +....+|..+..+++|
T Consensus 216 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred HhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 4566777777777776666665566666666666653 3333444445555566
Q ss_pred cEEEccCCCCCc--cchhhccccccceeeec-Cc---cCCcchhcCCccCccccccc----------ccccCCCCchh-c
Q 045386 577 ETLEMPSSYIDQ--SPEDIWMMQKLMHLNFG-SI---TLPAPPKNYSSSLKNLIFIS----------ALNPSSCTPDI-L 639 (706)
Q Consensus 577 ~~L~L~~~~~~~--lP~~l~~L~~L~~L~l~-~~---~lp~~i~~~l~~L~~L~~~~----------~~~~~~~~~~~-l 639 (706)
++|+|++|.+.. ++..+..+++|++|++. .. .++.... .+++|++|++.+ ++..+...... .
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~-~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ-YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH-HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHH-hCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 666666554321 12234555566666552 11 1222223 455666666552 22211101111 2
Q ss_pred CCCCCCCeEEEEccCCcCccchHHhcCC-CCCCcEEEEeeCCC-CCccccCC-------cccccccceEEeccc
Q 045386 640 DRLPSVRTLRISGDLSYYQSGVSKSLCE-LHKLECLKLVNESK-PSWMVLSE-------YQFPPSLIQLSLSIV 704 (706)
Q Consensus 640 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~-l~~L~~L~L~~~~~-~~l~~l~~-------~~~p~~L~~L~L~~n 704 (706)
..+++|+.|.+.++. .....+..+.. +++|+.|+++++.. +.+...+. ..-.++|+.|+|++|
T Consensus 375 ~~~~~L~~L~l~~~~--l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 375 QGCQELEYMAVYVSD--ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHCTTCSEEEEEESC--CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred hhCccCeEEEeecCC--ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 346677777775554 34444445544 66777777765321 22322110 011367888888654
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.61 E-value=3.6e-09 Score=120.27 Aligned_cols=174 Identities=18% Similarity=0.148 Sum_probs=96.6
Q ss_pred CcccccEEEecCC-CCCc--CCccccccccCcEEEcccCCccc-----cChhhcCCCCCcEEEccCCC--CC--ccchhh
Q 045386 526 KFKHLRVLNFGSA-VLDQ--FPPGLENLFLLKYLKLNIPSLKR-----LPSLLCTLLNLETLEMPSSY--ID--QSPEDI 593 (706)
Q Consensus 526 ~l~~L~~L~L~~~-~l~~--lp~~~~~L~~Lr~L~Ls~~~l~~-----lP~~i~~L~~L~~L~L~~~~--~~--~lP~~l 593 (706)
.+++|++|+|++| .++. ++..+..+++|++|+|++|.++. ++.....+++|++|++++|. +. .++.-+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 5677888888877 3542 44445567788888888776543 33333466788888888775 21 122223
Q ss_pred ccccccceeeecCc----cCCcchhcCCccCcccccccccc-----------------------------cCCCCchhcC
Q 045386 594 WMMQKLMHLNFGSI----TLPAPPKNYSSSLKNLIFISALN-----------------------------PSSCTPDILD 640 (706)
Q Consensus 594 ~~L~~L~~L~l~~~----~lp~~i~~~l~~L~~L~~~~~~~-----------------------------~~~~~~~~l~ 640 (706)
..+++|++|++... .+|..+. .+++|+.|.+..+.. .....+..+.
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~ 286 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQ-RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHH-HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHh-cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence 45678888888322 3444455 666666665322210 0000111222
Q ss_pred CCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEeeCCC-CCccccCCcccccccceEEecc
Q 045386 641 RLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVNESK-PSWMVLSEYQFPPSLIQLSLSI 703 (706)
Q Consensus 641 ~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~-~~l~~l~~~~~p~~L~~L~L~~ 703 (706)
.+++|++|+++++. -....+...+..+++|+.|++++|.. ..+..+ ....++|++|+|++
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l--~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL--ASTCKDLRELRVFP 347 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH--HHHCTTCCEEEEEC
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHH--HHhCCCCCEEEEec
Confidence 45777888877765 11223444566778888888887411 011111 01136788888843
No 147
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.60 E-value=7.9e-08 Score=102.85 Aligned_cols=137 Identities=13% Similarity=-0.007 Sum_probs=94.9
Q ss_pred cccccccHHHHHHHHhcC--CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC-----C-cceEEEecCCCCHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG--PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF-----D-CLAWVRVSIGYYFGKILDD 258 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~-~~~wv~vs~~~~~~~i~~~ 258 (706)
++||+.+++++.+++... ......+.|+|++|+||||+|+.+++ .....+ + ..+|+......+...++..
T Consensus 21 ~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 21 LPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp CTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 999999999999988542 23467899999999999999999998 443221 1 3566777777788899999
Q ss_pred HHHhcCCCCCCccccCC-CHHHHHHHHHHHhc--CCceEEEEccCCCChh----hHHHHHhhcC---CC--CCCcEEEEe
Q 045386 259 IINSLMPPSRARVIIGE-DYHLKKSILRDYLT--NKKYFIVRDDVFNDSD----IWDDLEEVLP---DK--QNGSRVLIL 326 (706)
Q Consensus 259 il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~--~kr~LlVlDdvw~~~~----~~~~l~~~l~---~~--~~gs~IivT 326 (706)
++.+++.... ... +..++...+.+.+. +++.+||||+++. .. ..+.+...+. .. ..+..+|.|
T Consensus 99 l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~-l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 99 IAEAVGVRVP----FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF-LPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHSCCCC----SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH-HHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh-hcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 9999976432 122 56677777777773 4688999999987 22 2233332222 11 445677888
Q ss_pred eCCc
Q 045386 327 VTDP 330 (706)
Q Consensus 327 TR~~ 330 (706)
|+..
T Consensus 174 t~~~ 177 (387)
T 2v1u_A 174 TNSL 177 (387)
T ss_dssp CSCS
T ss_pred ECCC
Confidence 7765
No 148
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.59 E-value=6.2e-08 Score=103.55 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=96.1
Q ss_pred cccccccHHHHHHHHhcC--CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCC---cceEEEecCCCCHHHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG--PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFD---CLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~~~~~i~~~il~ 261 (706)
++||+.+++.+.+++... ......+.|+|++|+||||||+.+++ .....|. ..+|+......+...++..++.
T Consensus 22 ~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 22 LPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp CTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999988742 23467899999999999999999998 5544432 3566766666777888888888
Q ss_pred hcCCCCCCccccCC-CHHHHHHHHHHHhc--CCceEEEEccCCC-----ChhhHHHHHhhcCC-CCCCcEEEEeeCCcc
Q 045386 262 SLMPPSRARVIIGE-DYHLKKSILRDYLT--NKKYFIVRDDVFN-----DSDIWDDLEEVLPD-KQNGSRVLILVTDPI 331 (706)
Q Consensus 262 ~l~~~~~~~~~~~~-~~~~~~~~l~~~L~--~kr~LlVlDdvw~-----~~~~~~~l~~~l~~-~~~gs~IivTTR~~~ 331 (706)
+++.... ... +..++...+.+.+. +++.+||+|+++. +...+..+...+.. ...+..+|+||+...
T Consensus 100 ~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 100 SLDVKVP----FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TTSCCCC----SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8865432 112 56666677777765 3589999999876 13344444444422 233556788887654
No 149
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.59 E-value=1.5e-07 Score=91.91 Aligned_cols=118 Identities=9% Similarity=0.021 Sum_probs=79.1
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecC--CCCHHHHHHHHHH
Q 045386 184 WLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSI--GYYFGKILDDIIN 261 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~il~ 261 (706)
+.+++|++..++.+.+++.... ...+.|+|.+|+|||++|+.+++ ..........++.+.. ....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~--------- 82 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGI--------- 82 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCH---------
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccCh---------
Confidence 3349999999999999997654 33489999999999999999988 4433222333444432 2222
Q ss_pred hcCCCCCCccccCCCHHHHHHHHHHHh------cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 262 SLMPPSRARVIIGEDYHLKKSILRDYL------TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~l~~~L------~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
..+...+.... .+++.+||+||++. ....++.+...+.....+.++|+||+..
T Consensus 83 ----------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 83 ----------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp ----------------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ----------------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 22222222222 25788999999987 4556667776666556678889988765
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.57 E-value=2.4e-07 Score=91.77 Aligned_cols=138 Identities=15% Similarity=0.088 Sum_probs=78.2
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhc
Q 045386 184 WLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSL 263 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l 263 (706)
+.+++||+..++.+..++.... ....+.|+|.+|+||||+|+.+++ .....+....+ ....... ...+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~----~~~~~~~-~~~~~~~~ 93 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK--GLNCETGITAT----PCGVCDN-CREIEQGR 93 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHH--HHHCTTCSCSS----CCSCSHH-HHHHHTTC
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCCC----CCcccHH-HHHHhccC
Confidence 3449999999999999997653 235889999999999999999987 33222110000 0000000 00110000
Q ss_pred CCCCCCccccC-C-CHHHHHHHHHHH----hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 264 MPPSRARVIIG-E-DYHLKKSILRDY----LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 264 ~~~~~~~~~~~-~-~~~~~~~~l~~~----L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
..... ..... . ..+.+...+... ..+++.+||+||++. +...++.+...+.....+..+|+||+..
T Consensus 94 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 94 FVDLI-EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp CSSEE-EEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred CcceE-EecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 00000 00000 0 112222222111 135689999999976 4677888887776666678899998765
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=7.6e-08 Score=100.83 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=51.5
Q ss_pred ccccceeeec---CccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCC-eEEEEccCCcCccchHHhcCCCCC
Q 045386 596 MQKLMHLNFG---SITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVR-TLRISGDLSYYQSGVSKSLCELHK 670 (706)
Q Consensus 596 L~~L~~L~l~---~~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~l~~l~~ 670 (706)
+++|+.|++. ...+|.. |. .+++|+.|.+..+ .... ....|..+++|+ .+.+... ....-+.+|.++++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~-~~~~L~~l~l~~n-i~~I-~~~aF~~~~~L~~~l~l~~~---l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFA-QKKYLLKIKLPHN-LKTI-GQRVFSNCGRLAGTLELPAS---VTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTT-TCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEEECTT---CCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhh-CCCCCCEEECCcc-ccee-hHHHhhCChhccEEEEEccc---ceEEchhhhhCCcc
Confidence 4566666662 2355554 44 6666766665443 1111 344566677777 7776542 33333456667777
Q ss_pred CcEEEEeeCCCCCccccCCccc--ccccceEE
Q 045386 671 LECLKLVNESKPSWMVLSEYQF--PPSLIQLS 700 (706)
Q Consensus 671 L~~L~L~~~~~~~l~~l~~~~~--p~~L~~L~ 700 (706)
|+.|++.++ .+..+....| .++|+.++
T Consensus 299 L~~l~l~~n---~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 299 LRYVLATGD---KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEEECSS---CCCEECTTTTCTTCCCCEEE
T ss_pred CCEEEeCCC---ccCccchhhhcCCcchhhhc
Confidence 777777552 3333333333 35666654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=1.2e-07 Score=99.91 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=56.2
Q ss_pred ccCcccccEEEecC-CCCCcCC-ccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccchhhccccccc
Q 045386 524 CKKFKHLRVLNFGS-AVLDQFP-PGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPEDIWMMQKLM 600 (706)
Q Consensus 524 ~~~l~~L~~L~L~~-~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~~l~~L~~L~ 600 (706)
+..+++|+.|+|++ |.++.+| ..|+.|++|++|+|++|.|+.+|+ .+.+|++|++|+|++|.+..+|..+....+|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 56666777777775 7777665 457777777777777777776654 45777777777777777777776544433477
Q ss_pred eeee
Q 045386 601 HLNF 604 (706)
Q Consensus 601 ~L~l 604 (706)
+|++
T Consensus 107 ~l~l 110 (347)
T 2ifg_A 107 ELVL 110 (347)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7777
No 153
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.54 E-value=1.4e-07 Score=99.61 Aligned_cols=252 Identities=11% Similarity=0.029 Sum_probs=141.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCC-----CCHHHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIG-----YYFGKILDDIIN 261 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~il~ 261 (706)
++||+++.+.+.+ +.. +++.|+|++|+|||||++++.+. ... ..+|+..... .+...+...+.+
T Consensus 15 ~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 15 FFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp SCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred hcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHHH
Confidence 9999999999999 643 59999999999999999999983 322 2577776542 344455544444
Q ss_pred hcCC-------------CC-----CC-cccc-----CC-CHHHHHHHHHHHhcCCceEEEEccCCC-C----hhhHHHHH
Q 045386 262 SLMP-------------PS-----RA-RVII-----GE-DYHLKKSILRDYLTNKKYFIVRDDVFN-D----SDIWDDLE 311 (706)
Q Consensus 262 ~l~~-------------~~-----~~-~~~~-----~~-~~~~~~~~l~~~L~~kr~LlVlDdvw~-~----~~~~~~l~ 311 (706)
.+.. .. .. .... .. ....+...+.+.-. ++++||+||++. + ...+..+.
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~ 162 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALA 162 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHH
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHH
Confidence 3310 00 00 0000 12 55666666665433 499999999976 2 12233333
Q ss_pred hhcCCCCCCcEEEEeeCCcce-------------------e------------------ecc--c----------cccCC
Q 045386 312 EVLPDKQNGSRVLILVTDPIL-------------------L------------------TFF--E----------LEHGG 342 (706)
Q Consensus 312 ~~l~~~~~gs~IivTTR~~~v-------------------~------------------af~--~----------~~c~~ 342 (706)
.... ...+.++|+|+|.... . .|. . ..| +
T Consensus 163 ~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t-~ 240 (357)
T 2fna_A 163 YAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKI-G 240 (357)
T ss_dssp HHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHH-C
T ss_pred HHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHh-C
Confidence 3222 2246789999886421 0 110 0 015 8
Q ss_pred CccceeeecccccccCC-HHHHH-HHHHHhCcCcccCccchhhhhhcccccccc--cCCCcchHHHhhhhccCCCCcEEc
Q 045386 343 IIPLYSVPVGGPLIRLK-HEAWQ-FFILHYGSAPLVNYMDEKVVLTLLSRICSV--LELPFHLKVCCLYLCVFRPGIEMS 418 (706)
Q Consensus 343 glPLai~~~g~~L~~~~-~~~w~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~sy--~~L~~~lk~cfl~~s~Fp~~~~i~ 418 (706)
|.|+++..++..+.... ...|. .+.+..... ....+.. +.+ ..||+..+..+..+|. +. +
T Consensus 241 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~-~~~~~~~l~~~~~~~l~~la~---g~--~ 304 (357)
T 2fna_A 241 GIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL----------ILKEFEN-FLHGREIARKRYLNIMRTLSK---CG--K 304 (357)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----------HHHHHHH-HHTTCGGGHHHHHHHHHHHTT---CB--C
T ss_pred CCHHHHHHHHHHHccccchHHHHHHHHHHHHHH----------HHHHHHH-HhhccccccHHHHHHHHHHHc---CC--C
Confidence 99998888776653222 22221 111110000 0000111 111 1577888888888887 22 4
Q ss_pred hHhHHHHHH-hCCCCCCCcHHHHHHHHHHHHhcCceeeeecCCCCCeeEEE-cChhHHHHH
Q 045386 419 TRQLCQLWI-AEGFVPYNGEETAEHYLKELIHRGFIQVSKRRAGGTIKACY-VPSFVYTSL 477 (706)
Q Consensus 419 ~~~li~~W~-a~g~i~~~~e~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~-mHdlv~~~~ 477 (706)
...+....- ..|. .........+++.|++.+++.... ..|+ .|++++++.
T Consensus 305 ~~~l~~~~~~~~g~--~~~~~~~~~~L~~L~~~gli~~~~-------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGI--EISDSEIYNYLTQLTKHSWIIKEG-------EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCS--CCCHHHHHHHHHHHHHTTSEEESS-------SCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCCEEecC-------CEEEecCHHHHHhh
Confidence 444443211 1121 012566788999999999998653 2355 578888763
No 154
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.47 E-value=1.5e-08 Score=115.02 Aligned_cols=149 Identities=18% Similarity=0.200 Sum_probs=70.5
Q ss_pred CcccccEEEecCCCCCc-----CCccccccccCcEEEcccCC--cc--ccChhhcCCCCCcEEEccCC-CCCccchhhcc
Q 045386 526 KFKHLRVLNFGSAVLDQ-----FPPGLENLFLLKYLKLNIPS--LK--RLPSLLCTLLNLETLEMPSS-YIDQSPEDIWM 595 (706)
Q Consensus 526 ~l~~L~~L~L~~~~l~~-----lp~~~~~L~~Lr~L~Ls~~~--l~--~lP~~i~~L~~L~~L~L~~~-~~~~lP~~l~~ 595 (706)
++++|++|+|++|.++. ++.....+++|++|++++|. +. .++.-+.++++|++|++++| .+..+|..+..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 45566666666655432 11222244556666665554 11 12222234455555555555 33344444444
Q ss_pred ccccceeeec----------------------------------CccCCcchhcCCccCcccccccccccCCCCchhcCC
Q 045386 596 MQKLMHLNFG----------------------------------SITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDR 641 (706)
Q Consensus 596 L~~L~~L~l~----------------------------------~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~ 641 (706)
+++|++|++. ...+|..+. .+++|++|++..+..........+..
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~ 312 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQ 312 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHTT
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHhc
Confidence 4444444420 012333333 45666677665554211101222456
Q ss_pred CCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEe
Q 045386 642 LPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLV 677 (706)
Q Consensus 642 L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 677 (706)
+++|+.|++.++. ....++.....+++|+.|++.
T Consensus 313 ~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 313 CPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp CTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCcCEEeCcCcc--CHHHHHHHHHhCCCCCEEEEe
Confidence 7777777777652 222333333345666666663
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.46 E-value=2.8e-07 Score=97.18 Aligned_cols=98 Identities=20% Similarity=0.129 Sum_probs=80.1
Q ss_pred cEEEecCC-CCCcCCccccccccCcEEEccc-CCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccccceeeec-
Q 045386 531 RVLNFGSA-VLDQFPPGLENLFLLKYLKLNI-PSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFG- 605 (706)
Q Consensus 531 ~~L~L~~~-~l~~lp~~~~~L~~Lr~L~Ls~-~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~- 605 (706)
..++++++ .++.+|. +..+.+|++|+|++ |.|+.+|+ .+++|.+|++|+|++|.+..+|. .|.+|++|++|+++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688888 7999999 99999999999996 99998885 58999999999999999988876 67999999999992
Q ss_pred --CccCCcchhcCCccCcccccccccc
Q 045386 606 --SITLPAPPKNYSSSLKNLIFISALN 630 (706)
Q Consensus 606 --~~~lp~~i~~~l~~L~~L~~~~~~~ 630 (706)
...+|..+. ....|+.|.+.++..
T Consensus 90 N~l~~~~~~~~-~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWKTV-QGLSLQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCSTTT-CSCCCCEEECCSSCC
T ss_pred CccceeCHHHc-ccCCceEEEeeCCCc
Confidence 236777655 333488888766554
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=5.2e-07 Score=94.40 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=77.2
Q ss_pred CCCCcEEEccCCCCCccch-hhccccccceeee--cCccCCcc-hhcCCccCc-ccccccccccCCCCchhcCCCCCCCe
Q 045386 573 LLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNF--GSITLPAP-PKNYSSSLK-NLIFISALNPSSCTPDILDRLPSVRT 647 (706)
Q Consensus 573 L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l--~~~~lp~~-i~~~l~~L~-~L~~~~~~~~~~~~~~~l~~L~~L~~ 647 (706)
+++|+.|+|++|.+..+|. .|.++++|+.|++ +...++.. |. .+++|+ .+.+.. +.... ....|..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~-~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFS-NCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhh-CChhccEEEEEcc-cceEE-chhhhhCCccCCE
Confidence 7899999999999999988 6889999999999 43466665 56 888998 888655 32222 5677899999999
Q ss_pred EEEEccCCcCccchHHhcCCCCCCcEEEE
Q 045386 648 LRISGDLSYYQSGVSKSLCELHKLECLKL 676 (706)
Q Consensus 648 L~l~~~~~~~~~~~~~~l~~l~~L~~L~L 676 (706)
|.+..+. ....-+..|.++++|+.++.
T Consensus 302 l~l~~n~--i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDK--ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSC--CCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCc--cCccchhhhcCCcchhhhcc
Confidence 9997664 33444558889999998863
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=8.3e-07 Score=92.32 Aligned_cols=121 Identities=10% Similarity=0.088 Sum_probs=76.8
Q ss_pred CccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHh
Q 045386 183 HWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINS 262 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~ 262 (706)
.+.+++|++..++.+.+++..+. ...+.++|.+|+||||+|+.+++ .+........++.+......
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~---------- 84 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDR---------- 84 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCC----------
T ss_pred CHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCcccc----------
Confidence 34449999999999999997654 33389999999999999999988 43221111223333221100
Q ss_pred cCCCCCCccccCCCHHHHHHHHHHHh-------cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 263 LMPPSRARVIIGEDYHLKKSILRDYL-------TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~L-------~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
+.+.+.+.+.... .+++.+||+||++. ....++.+...+.....++.+|+||+..
T Consensus 85 -------------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 85 -------------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp -------------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred -------------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 1222222222222 35688999999987 3455666666665555678888888664
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.29 E-value=3e-06 Score=90.99 Aligned_cols=175 Identities=12% Similarity=0.144 Sum_probs=92.7
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCC----------------
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSS---------------- 584 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~---------------- 584 (706)
..|.++++|+.++|++|.++.+|.......+|+.+.|..+ ++.++.. +.++.+|+.+++..+
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~ 252 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITT 252 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSE
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccE
Confidence 5577777788888877777766655434567777777633 5555443 456666666666543
Q ss_pred -----CCCccch-hhccccccceeee--cCcc------CCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEE
Q 045386 585 -----YIDQSPE-DIWMMQKLMHLNF--GSIT------LPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLR 649 (706)
Q Consensus 585 -----~~~~lP~-~l~~L~~L~~L~l--~~~~------lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~ 649 (706)
.+..++. .|.++++|+.+.+ +... ++.. |. .+++|+.+.+.+ +.... ....+.++++|+.+.
T Consensus 253 i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~-~c~~L~~l~l~~-~i~~I-~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 253 VKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-GCPKLARFEIPE-SIRIL-GQGLLGGNRKVTQLT 329 (401)
T ss_dssp EEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT-TCTTCCEECCCT-TCCEE-CTTTTTTCCSCCEEE
T ss_pred EEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh-CCccCCeEEeCC-ceEEE-hhhhhcCCCCccEEE
Confidence 1233322 4445555555555 1111 3333 33 555565555432 11111 334456666777776
Q ss_pred EEccCCcCccchHHhcCCCCCCcEEEEeeCCCCCccccCCcccccccceEEeccc
Q 045386 650 ISGDLSYYQSGVSKSLCELHKLECLKLVNESKPSWMVLSEYQFPPSLIQLSLSIV 704 (706)
Q Consensus 650 l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~l~~l~~~~~p~~L~~L~L~~n 704 (706)
+..+ ....-..+|..+ +|+.|.+.++..+.+..-.-..+|.+++.|++-.+
T Consensus 330 lp~~---l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 330 IPAN---VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp ECTT---CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred ECcc---ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 6433 222233466666 77777777754322221111223456777776544
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=4.9e-08 Score=103.95 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=20.9
Q ss_pred cCCCCCCCeEEEEccCCc--CccchHHhcCCCCCCcEEEEeeCC
Q 045386 639 LDRLPSVRTLRISGDLSY--YQSGVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 639 l~~L~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~L~~~~ 680 (706)
+...++|+.|++++|.-. ....++..+...++|++|+|++|.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 444555666666655411 011234444455566666666643
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=3.6e-06 Score=88.90 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=28.9
Q ss_pred CCCCCCeEEEEccCCcCccchHHhc---CCCCCCcEEEEeeCCCCC--ccccC-CcccccccceEEecccC
Q 045386 641 RLPSVRTLRISGDLSYYQSGVSKSL---CELHKLECLKLVNESKPS--WMVLS-EYQFPPSLIQLSLSIVR 705 (706)
Q Consensus 641 ~L~~L~~L~l~~~~~~~~~~~~~~l---~~l~~L~~L~L~~~~~~~--l~~l~-~~~~p~~L~~L~L~~n~ 705 (706)
.+++|+.|++.+|. .....+..+ ..+++|++|+|+.|...+ ...+. .....++|+.|+|++|.
T Consensus 250 ~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 35667777776654 222111111 245667777776643210 00011 00112567777776653
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.15 E-value=1.1e-05 Score=86.73 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=83.3
Q ss_pred ccccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccch-hhcccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQKL 599 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L 599 (706)
..|.++ .|+.+.+.. .++.++ ..|.++.+|+.++|++|.++.+|.......+|+.+.|..+ +..++. .|.++++|
T Consensus 152 ~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L 228 (401)
T 4fdw_A 152 MAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQL 228 (401)
T ss_dssp TTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTC
T ss_pred HhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCC
Confidence 455554 588888875 566665 5588899999999999999999887666789999999754 777765 67788889
Q ss_pred ceeee--cCccCCcchhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEcc
Q 045386 600 MHLNF--GSITLPAPPKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGD 653 (706)
Q Consensus 600 ~~L~l--~~~~lp~~i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 653 (706)
+.+.+ +...++.... .-++|+.+.+.+ +.... ....+..+++|+.+.+..+
T Consensus 229 ~~l~l~~~l~~I~~~aF-~~~~L~~i~lp~-~i~~I-~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 229 KTIEIPENVSTIGQEAF-RESGITTVKLPN-GVTNI-ASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp CCEECCTTCCEECTTTT-TTCCCSEEEEET-TCCEE-CTTTTTTCTTCCEEEEESS
T ss_pred CEEecCCCccCcccccc-ccCCccEEEeCC-CccEE-ChhHhhCCCCCCEEEeCCc
Confidence 88888 3334444432 224565555421 11111 2344556666666666544
No 162
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=2.5e-06 Score=88.82 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=77.7
Q ss_pred CCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHH
Q 045386 182 QHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 261 (706)
..+.+++|++..++.+.+++..+. ...+.++|.+|+||||+|+.+++ .+........++.+... +...
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~-~~~~------- 89 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNAS-DERG------- 89 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETT-CHHH-------
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeecc-ccCc-------
Confidence 334459999999999999987754 44489999999999999999998 43222111223333321 1100
Q ss_pred hcCCCCCCccccCCCHHHHHHHHHHH-----h-cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 262 SLMPPSRARVIIGEDYHLKKSILRDY-----L-TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~l~~~-----L-~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
.+.+...+.+. + .+++.+||+||++. ....++.+...+.....++++|+||...
T Consensus 90 ---------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 90 ---------------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp ---------------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ---------------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 00111111111 1 25688999999987 4566777777776555678888888665
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.01 E-value=9.2e-07 Score=94.10 Aligned_cols=127 Identities=19% Similarity=0.130 Sum_probs=88.4
Q ss_pred cccccEEEecCCCCCc-CCcc-ccccccCcEEEcccCCcccc-----Chhh-cCCCCCcEEEccCCCCCc-----cchhh
Q 045386 527 FKHLRVLNFGSAVLDQ-FPPG-LENLFLLKYLKLNIPSLKRL-----PSLL-CTLLNLETLEMPSSYIDQ-----SPEDI 593 (706)
Q Consensus 527 l~~L~~L~L~~~~l~~-lp~~-~~~L~~Lr~L~Ls~~~l~~l-----P~~i-~~L~~L~~L~L~~~~~~~-----lP~~l 593 (706)
.+.|+.|+|++|.++. -... ...+.+|++|+|++|.++.. ...+ ...++|++|+|++|.++. ++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3689999999998862 2222 33567899999999988632 2223 246789999999997754 55666
Q ss_pred ccccccceeeecCcc--------CCcchhcCCccCcccccccccccCC---CCchhcCCCCCCCeEEEEccC
Q 045386 594 WMMQKLMHLNFGSIT--------LPAPPKNYSSSLKNLIFISALNPSS---CTPDILDRLPSVRTLRISGDL 654 (706)
Q Consensus 594 ~~L~~L~~L~l~~~~--------lp~~i~~~l~~L~~L~~~~~~~~~~---~~~~~l~~L~~L~~L~l~~~~ 654 (706)
..+++|++|+++... ++..+. ..++|++|++..+..... .....+...++|++|++++|.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 788899999994332 244466 677899998877654321 123345567899999999987
No 164
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.01 E-value=2.7e-05 Score=80.07 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=74.7
Q ss_pred cccccccHHHHHHHHhcC--CCCcEEEEEEcCCCchhhHHHHHHHcCCCcccc-----CCc--ceEEEecCCCCHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG--PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFY-----FDC--LAWVRVSIGYYFGKILD 257 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~--~~wv~vs~~~~~~~i~~ 257 (706)
+.||+++.++|...|... ......+-|+|.+|.|||++|+.|.+ +.... ... .+.|....-.+...++.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~--~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD--ELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH--HHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 889999999999888652 33567889999999999999999998 44321 112 33444445567788999
Q ss_pred HHHHhcCCCCCCccccCCCHHHHHHHHHHH--hcCCceEEEEccCCC
Q 045386 258 DIINSLMPPSRARVIIGEDYHLKKSILRDY--LTNKKYFIVRDDVFN 302 (706)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdvw~ 302 (706)
.|++++.+.... .....+.+...+... -.+++++||||.+..
T Consensus 100 ~I~~~L~g~~~~---~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~ 143 (318)
T 3te6_A 100 KIWFAISKENLC---GDISLEALNFYITNVPKAKKRKTLILIQNPEN 143 (318)
T ss_dssp HHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred HHHHHhcCCCCC---chHHHHHHHHHHHHhhhccCCceEEEEecHHH
Confidence 999999764220 011344444444432 245689999999876
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=1.3e-05 Score=75.83 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=37.4
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||++.++++.+.+.... ...+.|+|.+|+||||+|+.+++
T Consensus 24 ~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 9999999999999987643 45678999999999999999987
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.81 E-value=7e-06 Score=86.67 Aligned_cols=152 Identities=22% Similarity=0.201 Sum_probs=88.0
Q ss_pred ccCcccccEEEecCCCCC----------cCCccccccccCcEEEcccCCccccChhhcCCCCCcEEEccCCCCCccc-hh
Q 045386 524 CKKFKHLRVLNFGSAVLD----------QFPPGLENLFLLKYLKLNIPSLKRLPSLLCTLLNLETLEMPSSYIDQSP-ED 592 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~~l~----------~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~~L~~L~L~~~~~~~lP-~~ 592 (706)
..++++|+.|.+.+.... .++..+..+++|+.|+|++|.-..+|. +. +++|+.|+|..|.+..-. ..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHH
Confidence 345677777777654321 233445667788888888763234554 33 778888888777543211 12
Q ss_pred hc--cccccceeeecC---c---c--C---Ccch--hcCCccCcccccccccccCC--CCchhcCCCCCCCeEEEEccCC
Q 045386 593 IW--MMQKLMHLNFGS---I---T--L---PAPP--KNYSSSLKNLIFISALNPSS--CTPDILDRLPSVRTLRISGDLS 655 (706)
Q Consensus 593 l~--~L~~L~~L~l~~---~---~--l---p~~i--~~~l~~L~~L~~~~~~~~~~--~~~~~l~~L~~L~~L~l~~~~~ 655 (706)
+. .+++|++|++.. . . + ...+ . .+++|++|.+.++..... ......+.+++|+.|+++.|.
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~-~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~- 290 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD-RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV- 290 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT-TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC-CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence 32 678888887721 0 0 0 0111 2 356788887765543211 011122457889999998775
Q ss_pred cCcc----chHHhcCCCCCCcEEEEeeCC
Q 045386 656 YYQS----GVSKSLCELHKLECLKLVNES 680 (706)
Q Consensus 656 ~~~~----~~~~~l~~l~~L~~L~L~~~~ 680 (706)
... .++..+..+++|+.|+|++|.
T Consensus 291 -L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 -LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp -CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred -CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 322 244445567889999998754
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.78 E-value=2.2e-05 Score=81.26 Aligned_cols=122 Identities=11% Similarity=-0.013 Sum_probs=74.4
Q ss_pred CccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCcc-ccCCc-ceEEEecCCCCHHHHHHHHH
Q 045386 183 HWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVK-FYFDC-LAWVRVSIGYYFGKILDDII 260 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~-~~wv~vs~~~~~~~i~~~il 260 (706)
.+.+++|++..++.+.+++..+. ...+-++|.+|+||||+|+.+.+ .+. ..+.. .+.+..+.....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~-------- 82 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGI-------- 82 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTSTTCT--------
T ss_pred CHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccccCh--------
Confidence 34449999999999988886643 33489999999999999999987 331 11111 122222221110
Q ss_pred HhcCCCCCCccccCCCHHHHHHHHHHH--h-cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 261 NSLMPPSRARVIIGEDYHLKKSILRDY--L-TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
+ ...+........ + .+++.+||+|++.. .....+.+...+.....+..+|+||...
T Consensus 83 -------------~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 83 -------------D-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp -------------T-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred -------------H-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 0 111111111111 1 25678999999976 3556666777776656677888888654
No 168
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=1.9e-05 Score=79.16 Aligned_cols=79 Identities=22% Similarity=0.136 Sum_probs=61.0
Q ss_pred cCcccccEEEecCCCCCcC---CccccccccCcEEEcccCCccccChhhcCCC--CCcEEEccCCCCC-ccch-------
Q 045386 525 KKFKHLRVLNFGSAVLDQF---PPGLENLFLLKYLKLNIPSLKRLPSLLCTLL--NLETLEMPSSYID-QSPE------- 591 (706)
Q Consensus 525 ~~l~~L~~L~L~~~~l~~l---p~~~~~L~~Lr~L~Ls~~~l~~lP~~i~~L~--~L~~L~L~~~~~~-~lP~------- 591 (706)
.+++.|+.|+|++|.++.+ |..+..+++|++|+|++|.|..+. .+..+. +|+.|+|++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4678999999999998854 456778999999999999998773 455555 9999999999775 3442
Q ss_pred hhccccccceeee
Q 045386 592 DIWMMQKLMHLNF 604 (706)
Q Consensus 592 ~l~~L~~L~~L~l 604 (706)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3567777777763
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.71 E-value=0.00013 Score=77.35 Aligned_cols=139 Identities=14% Similarity=0.039 Sum_probs=75.7
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhc
Q 045386 184 WLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSL 263 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l 263 (706)
+.+++|++..++.+.+.+..+. ....+.|+|..|+||||+|+.+.+.-.-...+.. .++..-.....+...-
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGR 86 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSC
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccC
Confidence 3449999999999999987653 2347889999999999999999873211111100 0000000001111000
Q ss_pred CCCCC--Ccc-ccCC-CHHHHHHHHHHH-hcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 264 MPPSR--ARV-IIGE-DYHLKKSILRDY-LTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 264 ~~~~~--~~~-~~~~-~~~~~~~~l~~~-L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
..... ... .... ...++...+... ..+++.+||+||+.. +...++.+...+.....+..+|++|...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 00000 000 0001 233333222211 135678999999976 4566777777776655567788887654
No 170
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.67 E-value=6.2e-05 Score=70.86 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=37.5
Q ss_pred ccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 186 DVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+++|++.+++.+.+.+.... ...+.|+|.+|+||||+|+.+.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 39999999999999997643 45678999999999999999987
No 171
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.66 E-value=4.9e-05 Score=73.05 Aligned_cols=88 Identities=18% Similarity=0.119 Sum_probs=51.5
Q ss_pred cHHHHHHHHhcCCCC--cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCc
Q 045386 193 GREELFDLLIEGPSG--LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRAR 270 (706)
Q Consensus 193 ~~~~i~~~L~~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~ 270 (706)
..+.+.+++...... ...+.|+|.+|+||||||+.+++ ........++|+.. .++...+.......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---- 104 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFRELKHSLQDQ---- 104 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHHHHHC---C----
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHHHHHHhccc----
Confidence 344555555543221 26889999999999999999998 44444344566643 34555554433211
Q ss_pred cccCCCHHHHHHHHHHHhcCCceEEEEccCCC
Q 045386 271 VIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 271 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
........+. . .-+|||||++.
T Consensus 105 -----~~~~~~~~~~----~-~~~lilDei~~ 126 (202)
T 2w58_A 105 -----TMNEKLDYIK----K-VPVLMLDDLGA 126 (202)
T ss_dssp -----CCHHHHHHHH----H-SSEEEEEEECC
T ss_pred -----hHHHHHHHhc----C-CCEEEEcCCCC
Confidence 2223333332 2 23999999965
No 172
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.63 E-value=0.00016 Score=65.52 Aligned_cols=112 Identities=7% Similarity=-0.110 Sum_probs=66.6
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCc-cccCCcceEEEecCCCCHHHHHHHHHHhcCC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHV-KFYFDCLAWVRVSIGYYFGKILDDIINSLMP 265 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~ 265 (706)
++|+...+.++.+.+..-.....-|-|+|.+|+|||++|+.+++.... ...| + +..+.-.+.
T Consensus 3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~------------- 65 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA------------- 65 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS-------------
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc-------------
Confidence 688989999988887532222334679999999999999999984211 1222 2 443332211
Q ss_pred CCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 266 PSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
. ..... +.. .+.-.|++|++.. .......+...+.......+||.||...
T Consensus 66 --~-------~~~~~---~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --P-------QLNDF---IAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp --S-------CHHHH---HHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred --h-------hhhcH---HHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 0 11111 111 1335789999987 4555566666665444456788887543
No 173
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.63 E-value=5.6e-05 Score=71.24 Aligned_cols=115 Identities=10% Similarity=-0.010 Sum_probs=62.4
Q ss_pred cHHHHHHHHhcCC-CCcEEEEEEcCCCchhhHHHHHHHcCCCcc--ccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCC
Q 045386 193 GREELFDLLIEGP-SGLSVIAILDSNGFDKTVFAADIYNNNHVK--FYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRA 269 (706)
Q Consensus 193 ~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~ 269 (706)
..+.+.+++..-. ..-..+.|+|.+|+||||||+.+++ ... ..+ .++++ +..++...+.........
T Consensus 22 ~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~~- 91 (180)
T 3ec2_A 22 ALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK--AIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGKD- 91 (180)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH--HHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH--HHHHHcCC-eEEEE------EHHHHHHHHHHHhcCchH-
Confidence 3444444443322 2357899999999999999999998 442 222 23344 344555555444322211
Q ss_pred ccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHH--HHHhhcCC-CCCCcEEEEeeCCc
Q 045386 270 RVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWD--DLEEVLPD-KQNGSRVLILVTDP 330 (706)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~--~l~~~l~~-~~~gs~IivTTR~~ 330 (706)
. ..... +. +.-+|||||++. ..+.|. .+...+.. ...|..||+||...
T Consensus 92 ------~--~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ------T--KFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ------S--HHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ------H--HHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 12222 22 456899999984 233332 33333332 12467888888543
No 174
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=3.6e-05 Score=73.01 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=62.2
Q ss_pred ccccCcccccEEEecCC-CCC-----cCCccccccccCcEEEcccCCccc-----cChhhcCCCCCcEEEccCCCCCc--
Q 045386 522 NFCKKFKHLRVLNFGSA-VLD-----QFPPGLENLFLLKYLKLNIPSLKR-----LPSLLCTLLNLETLEMPSSYIDQ-- 588 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~-~l~-----~lp~~~~~L~~Lr~L~Ls~~~l~~-----lP~~i~~L~~L~~L~L~~~~~~~-- 588 (706)
..+...+.|+.|+|++| .+. .+...+...++|++|+|++|.|.. +...+...++|++|+|++|.++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 45667888999999998 776 244556677889999999998863 55566677889999999997764
Q ss_pred ---cchhhccccccceeee
Q 045386 589 ---SPEDIWMMQKLMHLNF 604 (706)
Q Consensus 589 ---lP~~l~~L~~L~~L~l 604 (706)
+...+...++|++|++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHhCCCceEEEe
Confidence 4555666667777776
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.55 E-value=9e-05 Score=75.42 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=38.4
Q ss_pred CccccccccccHHHHHHHHhcC-----------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLLIEG-----------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|.+..+++|.+.+... -...+-+.|+|.+|+||||||+.+++
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3444999999999998877431 12355689999999999999999998
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.52 E-value=0.00018 Score=74.79 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=74.6
Q ss_pred CCCccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHH
Q 045386 181 GQHWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDII 260 (706)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 260 (706)
+..+.+++|.+..++.+.+++..+. ...++-+.|.+|+||||+|+.+.+ ..... .+.+..+. ...
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~~~---~~~i~~~~-~~~-------- 86 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVNAD---MMFVNGSD-CKI-------- 86 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTTEE---EEEEETTT-CCH--------
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCCC---EEEEcccc-cCH--------
Confidence 3344559999999999999998653 345777888899999999999988 33221 22333222 111
Q ss_pred HhcCCCCCCccccCCCHHHHHHHHHHHh-----cCCceEEEEccCCC-C-hhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 261 NSLMPPSRARVIIGEDYHLKKSILRDYL-----TNKKYFIVRDDVFN-D-SDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdvw~-~-~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
+.+...+.+.. .+++.+||+|++.. . ....+.+...+.....+.++|+||...
T Consensus 87 -----------------~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 87 -----------------DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNI 146 (324)
T ss_dssp -----------------HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSG
T ss_pred -----------------HHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 12222222222 23678999999987 3 445566665554434567888887654
No 177
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=3e-05 Score=77.71 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=70.1
Q ss_pred ccCcccccE--EEecCCCCCcCCcc----ccccccCcEEEcccCCcccc---ChhhcCCCCCcEEEccCCCCCccchhhc
Q 045386 524 CKKFKHLRV--LNFGSAVLDQFPPG----LENLFLLKYLKLNIPSLKRL---PSLLCTLLNLETLEMPSSYIDQSPEDIW 594 (706)
Q Consensus 524 ~~~l~~L~~--L~L~~~~l~~lp~~----~~~L~~Lr~L~Ls~~~l~~l---P~~i~~L~~L~~L~L~~~~~~~lP~~l~ 594 (706)
|...+.|.. ++++.|....++.. ..++++|+.|+|++|.|..+ |..+..+++|++|+|++|.+..+. .+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhh
Confidence 445555665 66777754433332 24689999999999998754 466789999999999999988873 355
Q ss_pred ccc--ccceeeecCcc----CCc-------chhcCCccCccccccc
Q 045386 595 MMQ--KLMHLNFGSIT----LPA-------PPKNYSSSLKNLIFIS 627 (706)
Q Consensus 595 ~L~--~L~~L~l~~~~----lp~-------~i~~~l~~L~~L~~~~ 627 (706)
.+. +|++|++.+.. +|. .+. .+++|+.|+...
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~-~~P~L~~LDg~~ 260 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE-RFPKLLRLDGHE 260 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH-HCTTCCEESSCB
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHH-HCcccCeECCcC
Confidence 555 89999984332 331 145 677777776543
No 178
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.46 E-value=0.00013 Score=75.16 Aligned_cols=121 Identities=13% Similarity=0.134 Sum_probs=69.1
Q ss_pred cccccccHHHHHHHHhc-------------CCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc--cCCcceEEEecCCCC
Q 045386 187 VSEFERGREELFDLLIE-------------GPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF--YFDCLAWVRVSIGYY 251 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~ 251 (706)
++|.+..++.|.+.+.. .......+.|+|.+|+|||++|+.+.+ .... .....-++.++..
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~--~l~~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG--LLHRLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH--HHHHTTSSSSCCEEEECGG--
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCcCCCcEEEEcHH--
Confidence 88988888888766541 123455789999999999999998877 3322 1222234444321
Q ss_pred HHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC----------ChhhHHHHHhhcCCCCCCc
Q 045386 252 FGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN----------DSDIWDDLEEVLPDKQNGS 321 (706)
Q Consensus 252 ~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~----------~~~~~~~l~~~l~~~~~gs 321 (706)
.+.... .......+...+... +..+|++|++.. .......+...+.....+.
T Consensus 109 ----------~l~~~~-----~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 109 ----------DLVGQY-----IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp ----------GTCCSS-----TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred ----------Hhhhhc-----ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 111100 000222222223222 346999999972 1445566666665555566
Q ss_pred EEEEeeCC
Q 045386 322 RVLILVTD 329 (706)
Q Consensus 322 ~IivTTR~ 329 (706)
.||.||..
T Consensus 171 ~~i~~~~~ 178 (309)
T 3syl_A 171 VVILAGYA 178 (309)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCh
Confidence 77777744
No 179
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.45 E-value=9e-05 Score=66.98 Aligned_cols=45 Identities=11% Similarity=-0.038 Sum_probs=33.1
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
++|++..+.++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 6 ~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp --CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 789988888888877531111234779999999999999999883
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.44 E-value=0.00032 Score=76.08 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=62.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
...+.|+|.+|+||||||+.+++ .....|...-++.++ ...+..++...+... .. ..+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~----~~~~~~~~~~~~~~~---------~~----~~~~~~ 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT----SEKFLNDLVDSMKEG---------KL----NEFREK 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEE----HHHHHHHHHHHHHTT---------CH----HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee----HHHHHHHHHHHHHcc---------cH----HHHHHH
Confidence 67899999999999999999998 555555332233332 233444454444322 11 223344
Q ss_pred hcCCceEEEEccCCC--Ch-hhHHHHHhhcCC-CCCCcEEEEeeCCc
Q 045386 288 LTNKKYFIVRDDVFN--DS-DIWDDLEEVLPD-KQNGSRVLILVTDP 330 (706)
Q Consensus 288 L~~kr~LlVlDdvw~--~~-~~~~~l~~~l~~-~~~gs~IivTTR~~ 330 (706)
+..+.-+|++||+.. +. ...+.+...+.. ...|..||+||.+.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 444677999999976 11 334444444432 24577899998764
No 181
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.0003 Score=73.79 Aligned_cols=135 Identities=11% Similarity=0.067 Sum_probs=73.6
Q ss_pred CccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc--cCCc-ceEEEecCCCCHHHHHHHH
Q 045386 183 HWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF--YFDC-LAWVRVSIGYYFGKILDDI 259 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~-~~wv~vs~~~~~~~i~~~i 259 (706)
.+.+++|+++.++.+..++..+. ...+.++|.+|+||||+|+.+.+ .+.. .+.. ...+..+.......+ ++.
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~--~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK--ELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH--HHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHH--HhCCCcccccceEEEccccccchHHH-HHH
Confidence 34449999999999999987654 23388999999999999999988 3321 1221 122222222222221 111
Q ss_pred HHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 260 INSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
+..+...... . .... .....-.+++-+|++|++.. .......+...+.......++|++|...
T Consensus 110 ~~~~~~~~~~--~-~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 110 VKNFARLTVS--K-PSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp HHHHHHSCCC--C-CCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHHHhhhccc--c-cchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 1111100000 0 0000 00011123556999999876 3455566666665545566777777543
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=0.00054 Score=71.94 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=36.1
Q ss_pred CccccccccccHHHHHHHH-hcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLL-IEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|.+..++.+.+++ ..+. ... +.|+|..|+||||+|+.+..
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 3444999999888888887 4333 223 89999999999999998876
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.34 E-value=6.8e-05 Score=73.92 Aligned_cols=60 Identities=7% Similarity=-0.052 Sum_probs=37.8
Q ss_pred cccccccc---ccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEec
Q 045386 184 WLDVSEFE---RGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVS 247 (706)
Q Consensus 184 ~~~~vGr~---~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 247 (706)
+.+++|.+ ...+.+..+.... ....+.|+|.+|+||||+|+.+++ ........+.|+..+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLG 89 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence 33466633 3444555555433 357889999999999999999988 444333345566543
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.29 E-value=0.00084 Score=69.59 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=38.1
Q ss_pred CccccccccccHHHHHHHHhc----------CCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLLIE----------GPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|.+..++.|.+.+.. .....+-|-++|.+|+|||+||+.+++
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 344599999999999887731 112346789999999999999999998
No 185
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.25 E-value=0.00031 Score=72.81 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=37.4
Q ss_pred ccccccccccHHHHHHHHhcC---CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 184 WLDVSEFERGREELFDLLIEG---PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.+++|++..+..+..++... ......+.|+|.+|+||||+|+.+++
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 334999999999888877531 12346788999999999999999988
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.23 E-value=0.0011 Score=66.14 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=34.7
Q ss_pred cccccccccHHHHHHHHh---cCC-------CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 185 LDVSEFERGREELFDLLI---EGP-------SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+++|.+..++.+.+++. ..+ ...+-|.|+|.+|+|||++|+.+++
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 348999888877766542 211 2345678999999999999999998
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.19 E-value=0.0006 Score=70.72 Aligned_cols=115 Identities=14% Similarity=0.048 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcccc
Q 045386 194 REELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVII 273 (706)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~ 273 (706)
...+..++.........+.|+|.+|+||||||+.+++ .....=...++++ ..++..++...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~------~~~~~~~~~~~~~~~------- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSS------ADDFAQAMVEHLKKG------- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEE------HHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEE------HHHHHHHHHHHHHcC-------
Confidence 3344444444332456789999999999999999998 3322111233442 233344444333211
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEccCCC-Ch--hhHHHHHhhcCC-CCCCcEEEEeeCCc
Q 045386 274 GEDYHLKKSILRDYLTNKKYFIVRDDVFN-DS--DIWDDLEEVLPD-KQNGSRVLILVTDP 330 (706)
Q Consensus 274 ~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~--~~~~~l~~~l~~-~~~gs~IivTTR~~ 330 (706)
.... +.+.+. +.-+|++||+.. .. ...+.+...+.. ...|..||+||.+.
T Consensus 88 --~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 88 --TINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp --CHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred --cHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 1122 222222 367899999976 11 233444444331 23456788888644
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.13 E-value=0.0047 Score=63.83 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=37.5
Q ss_pred CccccccccccHHHHHHHHhc---------C-CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLLIE---------G-PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|.++.++.|.+.+.. . ....+-|-++|.+|+|||+||+.+++
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 344599999998888877631 1 12346788999999999999999998
No 189
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.13 E-value=0.0022 Score=65.71 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=59.2
Q ss_pred ccccccccccHHHHHHHHhcC-----------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCH
Q 045386 184 WLDVSEFERGREELFDLLIEG-----------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYF 252 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 252 (706)
+.+++|.+..++++.+++... -...+.|.++|.+|+||||||+.+++ ..... ++.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~-----~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCE-----EEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCC-----EEEEE----h
Confidence 344999999888888776421 12356789999999999999999998 44322 23332 2
Q ss_pred HHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC
Q 045386 253 GKILDDIINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 253 ~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
.++..... +. ....+...+......+..+|++|++..
T Consensus 83 ~~l~~~~~----g~---------~~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 83 PELLTMWF----GE---------SEANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHHHHHHH----TT---------CTTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred HHHHhhhc----Cc---------hHHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 33332221 11 111233334444445679999999863
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.12 E-value=0.0026 Score=67.06 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=36.5
Q ss_pred ccccccccccHHH---HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 184 WLDVSEFERGREE---LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 184 ~~~~vGr~~~~~~---i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.+++|++..++. +.+.+.......+.+-|+|.+|+|||++|+.+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3349999988776 4555555443346899999999999999999998
No 191
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.08 E-value=0.0014 Score=68.90 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=37.7
Q ss_pred ccccccccccHHHHHHHHhc----------CCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 184 WLDVSEFERGREELFDLLIE----------GPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.+++|.+..++.|.+.+.. .....+.|.|+|.+|+|||++|+.+++
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34499999999999887742 012356789999999999999999998
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.0013 Score=68.62 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=69.4
Q ss_pred CccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc-cCCcceEEEecCCCCHHHHHHHHHH
Q 045386 183 HWLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF-YFDCLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~i~~~il~ 261 (706)
.+.+++|.+..++.+...+..+. ...+.++|..|+||||+|+.+.. .+.. .+. ...+.+.....
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~--~l~~~~~~-~~~~~~~~~~~---------- 87 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR--EIYGKNYS-NMVLELNASDD---------- 87 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH--HHHTTSHH-HHEEEECTTSC----------
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHcCCCcc-ceEEEEcCccc----------
Confidence 34448898888888888887654 33389999999999999999987 3321 111 11122211100
Q ss_pred hcCCCCCCccccCCCHHHHHHHHHHHh------cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCC
Q 045386 262 SLMPPSRARVIIGEDYHLKKSILRDYL------TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTD 329 (706)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~l~~~L------~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~ 329 (706)
...+.+.+.+.... .+.+-++|+|++.. .....+.+...+......+++|++|..
T Consensus 88 -------------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~ 149 (340)
T 1sxj_C 88 -------------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANY 149 (340)
T ss_dssp -------------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred -------------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 02222222222222 23467889999865 345566666655544456677777644
No 193
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.05 E-value=0.0012 Score=71.51 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=37.4
Q ss_pred CccccccccccH---HHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGR---EELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~---~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|.+..+ ..+...+..+. ...+.++|.+|+||||+|+.+.+
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 344489988777 66777776654 57889999999999999999998
No 194
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.00 E-value=0.00034 Score=66.23 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=67.2
Q ss_pred ccccCcccccEEEecCCCCCc-----CCccccccccCcEEEcccCCccc-----cChhhcCCCCCcEEEc--cCCCCCc-
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQ-----FPPGLENLFLLKYLKLNIPSLKR-----LPSLLCTLLNLETLEM--PSSYIDQ- 588 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~L~~Lr~L~Ls~~~l~~-----lP~~i~~L~~L~~L~L--~~~~~~~- 588 (706)
..+...+.|++|+|++|.+.. +...+...++|++|+|++|.|.. +...+...++|++|+| ++|.++.
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 445667899999999999872 44556677899999999999874 6777888889999999 8887764
Q ss_pred ----cchhhccccccceeeecC
Q 045386 589 ----SPEDIWMMQKLMHLNFGS 606 (706)
Q Consensus 589 ----lP~~l~~L~~L~~L~l~~ 606 (706)
+...+...++|++|++..
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHhCCCcCEEeccC
Confidence 455666678899998843
No 195
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.00 E-value=0.0022 Score=66.72 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=39.2
Q ss_pred CccccccccccHHHHHHHHhcC---CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLLIEG---PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|++..++.+..++... ......|-|+|.+|+|||++|+.+.+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3444999999999998888642 23456689999999999999999987
No 196
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.0015 Score=72.35 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=40.2
Q ss_pred CCccccccccccHHHHHHHHhcCC---------------CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 182 QHWLDVSEFERGREELFDLLIEGP---------------SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~---------------~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+.+++|++..++++.+++.... +..+.+.|+|.+|+||||+|+.+.+
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344459999999999999997510 1347899999999999999999998
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.97 E-value=0.0036 Score=67.81 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=37.8
Q ss_pred CccccccccccHHHHHHHHhc----C------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLLIE----G------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~----~------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|.+..++.|.+.+.. . ....+-|.++|.+|+|||+||+.+++
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344499999999999887731 0 12346789999999999999999998
No 198
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.97 E-value=0.0036 Score=66.65 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=38.2
Q ss_pred CccccccccccHHHHHHHHhcC----------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLLIEG----------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|.+..++.|.+++... ....+-|-|+|.+|+|||++|+.+++
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445999999999998887321 11246789999999999999999988
No 199
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.94 E-value=0.0016 Score=65.67 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=33.3
Q ss_pred cccccccHHHHHH-------HHhcC-CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFD-------LLIEG-PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~-------~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.....++++. .+... ......+-|+|.+|+|||++|+.+++
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 7777777666665 33221 34567899999999999999999998
No 200
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.91 E-value=0.0028 Score=66.58 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=37.2
Q ss_pred CccccccccccHHHHHHHHhcC----------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLLIEG----------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|.+..++.|.+.+... ....+-|-++|.+|+|||+||+.+++
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 3444999999999998877311 11234588999999999999999998
No 201
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.89 E-value=0.00064 Score=63.21 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=53.1
Q ss_pred ccccEEEecCCCCCc-CCccccccccCcEEEcccCC-ccc-cChhhcCC----CCCcEEEccCC-CCCccc-hhhccccc
Q 045386 528 KHLRVLNFGSAVLDQ-FPPGLENLFLLKYLKLNIPS-LKR-LPSLLCTL----LNLETLEMPSS-YIDQSP-EDIWMMQK 598 (706)
Q Consensus 528 ~~L~~L~L~~~~l~~-lp~~~~~L~~Lr~L~Ls~~~-l~~-lP~~i~~L----~~L~~L~L~~~-~~~~lP-~~l~~L~~ 598 (706)
..|+.||+++|.++. -...+..+++|++|+|++|. |+. --..++.+ ++|+.|+|++| .++.-- ..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 358889999988773 23557788899999999874 652 11244544 36899999888 565421 24566777
Q ss_pred cceeeec
Q 045386 599 LMHLNFG 605 (706)
Q Consensus 599 L~~L~l~ 605 (706)
|++|++.
T Consensus 141 L~~L~L~ 147 (176)
T 3e4g_A 141 LKYLFLS 147 (176)
T ss_dssp CCEEEEE
T ss_pred CCEEECC
Confidence 8888773
No 202
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.81 E-value=0.0093 Score=61.97 Aligned_cols=111 Identities=11% Similarity=0.078 Sum_probs=65.1
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc----------------------cCCcceEEEecCC
Q 045386 192 RGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF----------------------YFDCLAWVRVSIG 249 (706)
Q Consensus 192 ~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------------~F~~~~wv~vs~~ 249 (706)
+..+.+.+.+..+. -...+-++|..|+||||+|+.+.+. +.. |++ ..++...
T Consensus 9 ~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~-- 82 (334)
T 1a5t_A 9 PDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRY--LLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPE-- 82 (334)
T ss_dssp HHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHH--HTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCC--
T ss_pred HHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHH--HhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecc--
Confidence 34555666665443 3457889999999999999988762 211 111 1112110
Q ss_pred CCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHHh-----cCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcE
Q 045386 250 YYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILRDYL-----TNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSR 322 (706)
Q Consensus 250 ~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L-----~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~ 322 (706)
.. ... ..+++.+.+ +.+ .+++-++|+|++.. .....+.+...+.....++.
T Consensus 83 -----------------~~----~~~~~i~~ir~l~-~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~ 140 (334)
T 1a5t_A 83 -----------------KG----KNTLGVDAVREVT-EKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETW 140 (334)
T ss_dssp -----------------TT----CSSBCHHHHHHHH-HHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEE
T ss_pred -----------------cc----CCCCCHHHHHHHH-HHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeE
Confidence 00 011 333333222 222 25677899999977 45666777777766566778
Q ss_pred EEEeeCCc
Q 045386 323 VLILVTDP 330 (706)
Q Consensus 323 IivTTR~~ 330 (706)
+|++|.+.
T Consensus 141 ~Il~t~~~ 148 (334)
T 1a5t_A 141 FFLATREP 148 (334)
T ss_dssp EEEEESCG
T ss_pred EEEEeCCh
Confidence 88887765
No 203
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.79 E-value=0.00072 Score=61.43 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-..+.|+|..|+|||||++.+++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999998
No 204
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.77 E-value=0.0032 Score=63.09 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=33.7
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
++|.+..+.++.+.+..-.....-|-|+|.+|+|||++|+.+++.
T Consensus 8 ~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp --CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 889998888888776542112345779999999999999999983
No 205
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.65 E-value=0.0037 Score=60.43 Aligned_cols=90 Identities=10% Similarity=0.036 Sum_probs=54.5
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCC------ccccCC--CHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRA------RVIIGE--DYH 278 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~------~~~~~~--~~~ 278 (706)
.-.++.|+|.+|+|||||+..+.. . .=..++|++....++..++.. +++.++..... ...... ...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 356999999999999999999987 1 123577777666556655443 44433321000 000111 223
Q ss_pred HHHHHHHHHhcCCceEEEEccCCC
Q 045386 279 LKKSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~~~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
+....++..+..+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 455566666655567999998765
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.64 E-value=0.0092 Score=61.03 Aligned_cols=119 Identities=7% Similarity=-0.061 Sum_probs=70.1
Q ss_pred cccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCC-CccccCCcceEEEecC-CCCHHHHHHHHHHhcCCC
Q 045386 189 EFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNN-HVKFYFDCLAWVRVSI-GYYFGKILDDIINSLMPP 266 (706)
Q Consensus 189 Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~-~~~~~~i~~~il~~l~~~ 266 (706)
|-++.++.+.+.+..+. ....-++|..|+||||+|+.+.+.- .....+....++..+. ...+.+ .+++.+.+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhc
Confidence 33455667777776654 6788899999999999999997620 0111111223333221 122222 22333333221
Q ss_pred CCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCc
Q 045386 267 SRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDP 330 (706)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~ 330 (706)
. ..+++-++|+|++.. .....+.+...+......+.+|++|.+.
T Consensus 78 p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 78 P--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp C--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred c--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 1 124567899999977 4667777877777666678888887554
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.61 E-value=0.0039 Score=63.53 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=37.9
Q ss_pred CccccccccccHHHHHHHHhcC----------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLLIEG----------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|.+..++.+.+.+... ....+.+.|+|.+|+||||+|+.+.+
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3444999999999998877421 11246789999999999999999998
No 208
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.61 E-value=0.0012 Score=67.72 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=63.8
Q ss_pred cccccccHHHHHHHHhcC-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHH
Q 045386 187 VSEFERGREELFDLLIEG-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDI 259 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 259 (706)
++|.+..++.+...+... ......+.++|.+|+||||+|+.+.. .....-...+.+..+.-.+. .....+
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~-~~~~~l 95 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEK-HAVSRL 95 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCST-THHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccccccc-ccHHHh
Confidence 788888888887777542 11246899999999999999999988 33221112333443332221 111222
Q ss_pred HHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC-ChhhHHHHHhhcC
Q 045386 260 INSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN-DSDIWDDLEEVLP 315 (706)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~l~~~l~ 315 (706)
++..... .... ....+...+. .....+|+||++.. .......+...+.
T Consensus 96 ---~g~~~~~-~~~~-~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 96 ---IGAPPGY-VGYE-EGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLD 144 (311)
T ss_dssp ---HCCCTTS-TTTT-TCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred ---cCCCCcc-cccc-ccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHh
Confidence 2211110 0000 1112222222 23346999999976 4556666665553
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.61 E-value=0.0047 Score=61.48 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=34.6
Q ss_pred CccccccccccHHHHHHHH---hcCC-------CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 183 HWLDVSEFERGREELFDLL---IEGP-------SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L---~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++|.+..++++.+.+ .... ...+-|.|+|.+|+||||+|+.+.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3444999988877766543 2210 1234588999999999999999998
No 210
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.59 E-value=0.0017 Score=66.26 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=48.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEe--cCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRV--SIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILR 285 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (706)
-+++-|+|++|+||||||.++... .-..++|++. .+..+. . ..+.+.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~-------~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y-------NTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C-------BCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h-------hcCHHHHHHHHH
Confidence 467789999999999999999873 2224677877 333111 0 015667777777
Q ss_pred HHhcCCceEEEEccCCC
Q 045386 286 DYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~ 302 (706)
+.+...+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 7776666 999999876
No 211
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.57 E-value=0.0032 Score=68.73 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=36.7
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||+.+++.++..|.... ..-+-++|.+|+|||++|+.+..
T Consensus 182 iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 9999999999999997643 34567999999999999999987
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.43 E-value=0.0056 Score=66.99 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=58.5
Q ss_pred cccccccccHHHHHHHHhcC-----------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHH
Q 045386 185 LDVSEFERGREELFDLLIEG-----------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFG 253 (706)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 253 (706)
.+++|.+..+++|.+++... -...+-|-|+|.+|+|||++|+.+.+ +.... ++.++. .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~-----fv~vn~----~ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF-----FFLING----P 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSE-----EEEEEH----H
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCC-----EEEEEc----h
Confidence 34999999999988877531 12345688999999999999999988 43322 233321 1
Q ss_pred HHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccC
Q 045386 254 KILDDIINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDV 300 (706)
Q Consensus 254 ~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv 300 (706)
. +...+.+ .....+...+...-.++..+|+||++
T Consensus 273 ~----l~~~~~g---------~~~~~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 273 E----IMSKLAG---------ESESNLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp H----HHTSCTT---------HHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred H----hhhhhcc---------hhHHHHHHHHHHHHhcCCcEEEecch
Confidence 1 1111110 02333444555555677889999998
No 213
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.35 E-value=0.012 Score=63.87 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=55.9
Q ss_pred CccccccccccHHHHHHHHh---cC-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCH
Q 045386 183 HWLDVSEFERGREELFDLLI---EG-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYF 252 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 252 (706)
.+.+++|.++.++++.+.+. .. -...+-|.++|.+|.||||||+.+.+ +....| +.++.+.-..
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~- 87 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVE- 87 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTT-
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHH-
Confidence 34449999888777766543 21 01123478999999999999999998 333222 2222221110
Q ss_pred HHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHHhcCCceEEEEccCCC
Q 045386 253 GKILDDIINSLMPPSRARVIIGE-DYHLKKSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 253 ~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
.+ .. ....+...+.....+...+|++|++..
T Consensus 88 ---------~~----------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 88 ---------LF----------VGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp ---------CC----------TTHHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred ---------HH----------hcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 00 00 222333445555556789999999844
No 214
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.27 E-value=0.004 Score=63.77 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=35.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
++|+...+.++.+.+..-.....-|-|+|.+|+|||++|+.+.+.
T Consensus 4 iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred cEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 789988888888877642222345779999999999999999883
No 215
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.27 E-value=0.0028 Score=58.82 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=26.7
Q ss_pred CCccccccccCcEEEcccCCcccc-ChhhcCCCCCcEEEccCC-CCC
Q 045386 543 FPPGLENLFLLKYLKLNIPSLKRL-PSLLCTLLNLETLEMPSS-YID 587 (706)
Q Consensus 543 lp~~~~~L~~Lr~L~Ls~~~l~~l-P~~i~~L~~L~~L~L~~~-~~~ 587 (706)
+|.....-.+|++||+++|.|+.. -..+.++++|+.|+|++| .++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 344332334678888887776521 124567777777777777 344
No 216
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.18 E-value=0.0018 Score=66.46 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=33.4
Q ss_pred cHHHHHHHHhcCCC-CcEEEEEEcCCCchhhHHHHHHHcCCCcc-ccCCcceEEEe
Q 045386 193 GREELFDLLIEGPS-GLSVIAILDSNGFDKTVFAADIYNNNHVK-FYFDCLAWVRV 246 (706)
Q Consensus 193 ~~~~i~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~v 246 (706)
..+.+.+++..... ....+.|+|..|+|||+||+.+++ ... ..-..+.++.+
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 34445556654322 246788999999999999999998 443 32223445543
No 217
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.16 E-value=0.0016 Score=65.39 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=34.9
Q ss_pred ccccccccccHHHHHHHHhc----------CCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 184 WLDVSEFERGREELFDLLIE----------GPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.+++|.+..++.+.+.+.. .....+-+.|+|.+|+|||++|+.+++
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 33499999888888776541 001123377999999999999999998
No 218
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.03 E-value=0.016 Score=53.39 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=18.8
Q ss_pred EEEEEEcCCCchhhHHHHHH
Q 045386 209 SVIAILDSNGFDKTVFAADI 228 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v 228 (706)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 219
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.02 E-value=0.0075 Score=71.07 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=37.0
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||++++.++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 172 viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 172 VIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 9999999999999997643 34568999999999999999987
No 220
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.02 E-value=0.012 Score=61.32 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=58.2
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILR 285 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~ 285 (706)
.-+++.|+|.+|+||||||.++... ....=..++|++....++.. .+++++.......-... +.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3579999999999999999998873 32211246788776666654 45556544221101112 6677777777
Q ss_pred HHhc-CCceEEEEccCCC
Q 045386 286 DYLT-NKKYFIVRDDVFN 302 (706)
Q Consensus 286 ~~L~-~kr~LlVlDdvw~ 302 (706)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 6665 4556899998755
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.94 E-value=0.017 Score=56.01 Aligned_cols=118 Identities=12% Similarity=-0.020 Sum_probs=63.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCcc----------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARV---------------- 271 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~---------------- 271 (706)
-.++.|+|.+|+|||||++.+... ....=..++|+.. .....++...+ ..++.......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTT--EESRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEES--SSCHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEc--ccCHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 468999999999999999998852 2111123455543 33444444433 24432211000
Q ss_pred --ccCC-CHHHHHHHHHHHhcC-C--ceEEEEccCCC----ChhhHHHHHhhcCC--CCCCcEEEEeeCCc
Q 045386 272 --IIGE-DYHLKKSILRDYLTN-K--KYFIVRDDVFN----DSDIWDDLEEVLPD--KQNGSRVLILVTDP 330 (706)
Q Consensus 272 --~~~~-~~~~~~~~l~~~L~~-k--r~LlVlDdvw~----~~~~~~~l~~~l~~--~~~gs~IivTTR~~ 330 (706)
.... +.+++...+...+.. + ..+||+|.... |......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0012 456666666555532 3 34999998762 23333444333331 23477888888765
No 222
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.90 E-value=0.02 Score=55.25 Aligned_cols=121 Identities=16% Similarity=0.134 Sum_probs=64.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc---ccCCc---------ceEEEecCCC------CH----------------H
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK---FYFDC---------LAWVRVSIGY------YF----------------G 253 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~---------~~wv~vs~~~------~~----------------~ 253 (706)
-.+++|+|..|+|||||.+.++.-.+.. -.|+. +.+ +.+.+ ++ .
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~--v~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 112 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF--LPEEIIVPRKISVEDYLKAVASLYGVKVNK 112 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE--ECSSCCCCTTSBHHHHHHHHHHHTTCCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEE--EeCCCcCCCCCCHHHHHHHHHHhcCCchHH
Confidence 3589999999999999999998642110 01111 222 22221 11 1
Q ss_pred HHHHHHHHhcCCCCCCccccCC---CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCcEEEEee
Q 045386 254 KILDDIINSLMPPSRARVIIGE---DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGSRVLILV 327 (706)
Q Consensus 254 ~i~~~il~~l~~~~~~~~~~~~---~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs~IivTT 327 (706)
+-..++++.++.... ...... ...+.. .|...|-.++=+++||.--. |...-..+...+..- ..|..||++|
T Consensus 113 ~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv-~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivt 190 (214)
T 1sgw_A 113 NEIMDALESVEVLDL-KKKLGELSQGTIRRV-QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190 (214)
T ss_dssp HHHHHHHHHTTCCCT-TSBGGGSCHHHHHHH-HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEE
T ss_pred HHHHHHHHHcCCCcC-CCChhhCCHHHHHHH-HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 223455666655432 111222 233333 44555566677889998765 433333333333221 1366788888
Q ss_pred CCcce
Q 045386 328 TDPIL 332 (706)
Q Consensus 328 R~~~v 332 (706)
.+...
T Consensus 191 Hd~~~ 195 (214)
T 1sgw_A 191 REELS 195 (214)
T ss_dssp SSCCT
T ss_pred CCHHH
Confidence 77644
No 223
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.87 E-value=0.01 Score=60.46 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=23.9
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCcccc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFY 237 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 237 (706)
..+.+.++|.+|+|||+||+.+++ +....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~--~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR--KMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH--HHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhCCC
Confidence 456788999999999999999998 55433
No 224
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.84 E-value=0.035 Score=64.53 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=37.0
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 188 ~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 188 LIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 9999999999999997653 44568999999999999999987
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.81 E-value=0.012 Score=68.42 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=36.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++||+.++++++..|.... ..-+-++|.+|+|||++|+.+.+
T Consensus 182 iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 9999999999999997643 33477999999999999999987
No 226
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.80 E-value=0.013 Score=51.65 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=42.4
Q ss_pred cEEEecCCCCC--cCCccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCC
Q 045386 531 RVLNFGSAVLD--QFPPGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYI 586 (706)
Q Consensus 531 ~~L~L~~~~l~--~lp~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~ 586 (706)
..++.+++.++ .+|..+. .+|++|+|++|.|+.||.. +..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 46788888887 8886543 3688999999999988876 57788899999988843
No 227
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.79 E-value=0.0061 Score=59.11 Aligned_cols=113 Identities=14% Similarity=-0.049 Sum_probs=65.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILRD 286 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~ 286 (706)
-.++.|.|..|.||||++..+.. +...+-..++.+.-.. +.. -...|+++++..... ... ...++.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~--d~r-~~~~i~srlG~~~~~---~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKI--DTR-SIRNIQSRTGTSLPS---VEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECC--CGG-GCSSCCCCCCCSSCC---EEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEecc--Cch-HHHHHHHhcCCCccc---cccCCHHHHHHHHHH
Confidence 47889999999999999877776 3333222233332222 222 222445555443221 112 45566666666
Q ss_pred HhcCCce-EEEEccCCC-ChhhHHHHHhhcCCCCCCcEEEEeeCCcc
Q 045386 287 YLTNKKY-FIVRDDVFN-DSDIWDDLEEVLPDKQNGSRVLILVTDPI 331 (706)
Q Consensus 287 ~L~~kr~-LlVlDdvw~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 331 (706)
.+.+.++ +||+|.+.. +.+..+.+...-+ .|-.||+|-+..+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 6655555 999999875 3444444433222 2678999988543
No 228
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.025 Score=60.53 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=39.2
Q ss_pred ccccccccccHHHHHHHHhc----C-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCcccc
Q 045386 184 WLDVSEFERGREELFDLLIE----G-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFY 237 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 237 (706)
|.|+.|.++.+++|.+.+.- . -...+=|-++|++|.|||+||+.+++ +....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~ 242 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGAN 242 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC
Confidence 34488999888888776642 1 13457788999999999999999999 44443
No 229
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.75 E-value=0.045 Score=53.63 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcC---CCCCCcEEEEeeCCccee
Q 045386 277 YHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLP---DKQNGSRVLILVTDPILL 333 (706)
Q Consensus 277 ~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~---~~~~gs~IivTTR~~~v~ 333 (706)
..+.....+ .|-.++-+++||.--. |...-..+...+. ....|..||++|.+...+
T Consensus 132 qkqRv~lAr-aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 132 QKQRVSLAR-AVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL 192 (237)
T ss_dssp HHHHHHHHH-HHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG
T ss_pred HHHHHHHHH-HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH
Confidence 344444444 4445566789998776 5555566666552 223477888888876543
No 230
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.024 Score=60.46 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=40.2
Q ss_pred CccccccccccHHHHHHHHhc-----------CCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 183 HWLDVSEFERGREELFDLLIE-----------GPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
.+.|+.|.++.+++|.+.+.- +-...+=|-++|++|.|||+||+.+++ +....|
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~ 234 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF 234 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe
Confidence 344489999999888776642 113456688999999999999999998 444433
No 231
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.017 Score=61.71 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=41.0
Q ss_pred CCccccccccccHHHHHHHHh----cC-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 182 QHWLDVSEFERGREELFDLLI----EG-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~----~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
..|.++.|.++.+++|.+.+. .. -...+=|-++|++|.|||+||+.+++ +....|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 344559999999998877643 21 13467788999999999999999999 444433
No 232
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.73 E-value=0.037 Score=55.17 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=64.4
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCC-Ccc-ccCC-----------cceEEEecCCC----CH--------------HHHHH
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNN-HVK-FYFD-----------CLAWVRVSIGY----YF--------------GKILD 257 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~-~~~-~~F~-----------~~~wv~vs~~~----~~--------------~~i~~ 257 (706)
.+++|+|..|+|||||.+.+..-. .-. -.|+ .+.| .+.|.+ ++ .+-..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~ 109 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDRDLFL 109 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHHHHHH
Confidence 489999999999999999998632 100 0011 1110 233332 11 12234
Q ss_pred HHHHhcCCC-CCCccccCC---CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcc
Q 045386 258 DIINSLMPP-SRARVIIGE---DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPI 331 (706)
Q Consensus 258 ~il~~l~~~-~~~~~~~~~---~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 331 (706)
++++.++.. ......... ...+.. .|...|-.++=+++||.--. |...-..+...+..-.. .||++|.+..
T Consensus 110 ~~l~~~gl~~~~~~~~~~~LSgGqkqRv-~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~ 186 (263)
T 2pjz_A 110 EMLKALKLGEEILRRKLYKLSAGQSVLV-RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD 186 (263)
T ss_dssp HHHHHTTCCGGGGGSBGGGSCHHHHHHH-HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred HHHHHcCCChhHhcCChhhCCHHHHHHH-HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence 566666654 211111122 233333 44555556677899998766 54444444444433222 7888887754
Q ss_pred e
Q 045386 332 L 332 (706)
Q Consensus 332 v 332 (706)
.
T Consensus 187 ~ 187 (263)
T 2pjz_A 187 M 187 (263)
T ss_dssp G
T ss_pred H
Confidence 3
No 233
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.022 Score=59.97 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=39.5
Q ss_pred ccccccccccHHHHHHHHhc-----------CCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 184 WLDVSEFERGREELFDLLIE-----------GPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
|.|+.|.++.+++|.+.+.- +-...+=|-++|++|.|||.||+.+++ +....|
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 44488999988888776532 112356788999999999999999999 544443
No 234
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.58 E-value=0.022 Score=59.43 Aligned_cols=89 Identities=16% Similarity=0.017 Sum_probs=56.7
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILR 285 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~ 285 (706)
.-+++.|+|.+|+||||||.++... ....=..++|++....++.. .++.++.......-... +.++....++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3568999999999999999988762 22221357888887776643 24555543221000112 5666666666
Q ss_pred HHhcC-CceEEEEccCCC
Q 045386 286 DYLTN-KKYFIVRDDVFN 302 (706)
Q Consensus 286 ~~L~~-kr~LlVlDdvw~ 302 (706)
...+. +.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 65543 456999998754
No 235
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.56 E-value=0.13 Score=50.05 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=32.1
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhh-cCCCCCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEV-LPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~-l~~~~~gs~IivTTR~~~v 332 (706)
.|...|-.++-+++||.--. |...-..+... +.....|..||++|.+...
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 192 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence 44445555666889998776 56666666664 3333346788888887543
No 236
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.52 E-value=0.061 Score=53.69 Aligned_cols=124 Identities=13% Similarity=0.007 Sum_probs=67.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc---cCC--------------cceEEEecCC---------------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF---YFD--------------CLAWVRVSIG--------------------- 249 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~--------------~~~wv~vs~~--------------------- 249 (706)
-.+++|+|..|+|||||++.+..-..-.. .|+ .+.+ +.+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~--v~q~~~~~~~~tv~e~l~~~~~~~~ 114 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV--MRQYSELAFPFSVSEVIQMGRAPYG 114 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE--ECSCCCCCSCCBHHHHHHGGGTTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE--EecCCccCCCCCHHHHHHhhhhhcC
Confidence 46899999999999999999986321100 010 0111 1121
Q ss_pred -CCHHHHHHHHHHhcCCCCCCccccCC---CHHHHHHHHHHHhc-----CCceEEEEccCCC--ChhhHHHHHhhcCC--
Q 045386 250 -YYFGKILDDIINSLMPPSRARVIIGE---DYHLKKSILRDYLT-----NKKYFIVRDDVFN--DSDIWDDLEEVLPD-- 316 (706)
Q Consensus 250 -~~~~~i~~~il~~l~~~~~~~~~~~~---~~~~~~~~l~~~L~-----~kr~LlVlDdvw~--~~~~~~~l~~~l~~-- 316 (706)
....+...++++.++........... ...+.....+..+. .+.-+|+||.--. |...-..+...+..
T Consensus 115 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 115 GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 11233455667777654321111222 34444444444444 1777899998766 44444444444432
Q ss_pred CCCCcEEEEeeCCccee
Q 045386 317 KQNGSRVLILVTDPILL 333 (706)
Q Consensus 317 ~~~gs~IivTTR~~~v~ 333 (706)
...|..||++|.+...+
T Consensus 195 ~~~~~tvi~vtHdl~~~ 211 (266)
T 4g1u_C 195 RQEPLAVCCVLHDLNLA 211 (266)
T ss_dssp HHSSEEEEEECSCHHHH
T ss_pred HcCCCEEEEEEcCHHHH
Confidence 12355788888876543
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.48 E-value=0.0087 Score=57.45 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=29.0
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 193 GREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 193 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.++|.+.+......-.+|+|+|..|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555544334568999999999999999999887
No 238
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.46 E-value=0.029 Score=54.86 Aligned_cols=94 Identities=5% Similarity=-0.027 Sum_probs=55.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc----cCCcceEEEecCCCCHHHHHHHHHHhcCCCCC---Ccccc-CC-CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF----YFDCLAWVRVSIGYYFGKILDDIINSLMPPSR---ARVII-GE-DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~---~~~~~-~~-~~~ 278 (706)
-.++.|+|.+|+|||||++.+........ .-..++|+.....++..++ ..+++.++.... +.... .. +.+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999887322211 1245788877665555544 344555543310 00000 11 223
Q ss_pred H---HHHHHHHHhc-CCceEEEEccCCC
Q 045386 279 L---KKSILRDYLT-NKKYFIVRDDVFN 302 (706)
Q Consensus 279 ~---~~~~l~~~L~-~kr~LlVlDdvw~ 302 (706)
+ ....+.+.+. .+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 3344555554 4677999999865
No 239
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.40 E-value=0.028 Score=58.88 Aligned_cols=88 Identities=13% Similarity=0.006 Sum_probs=56.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILRD 286 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~ 286 (706)
-+++-|.|.+|+||||||.++... ....=..++|++....++.. .++.++.....-.-... +.+++...++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 468889999999999999888763 22222368899888776653 24555543211000112 66777777777
Q ss_pred HhcC-CceEEEEccCCC
Q 045386 287 YLTN-KKYFIVRDDVFN 302 (706)
Q Consensus 287 ~L~~-kr~LlVlDdvw~ 302 (706)
..+. +--+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 6654 445899998754
No 240
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.40 E-value=0.022 Score=59.47 Aligned_cols=89 Identities=11% Similarity=-0.050 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILR 285 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~ 285 (706)
.-+++.|.|.+|+||||||.++... ....=..++|++....++.. .+..++.....-.-... +.+++...++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3568999999999999999888763 22222358889887777643 24555543211000111 4566666665
Q ss_pred HHhc-CCceEEEEccCCC
Q 045386 286 DYLT-NKKYFIVRDDVFN 302 (706)
Q Consensus 286 ~~L~-~kr~LlVlDdvw~ 302 (706)
...+ .+--+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 5543 4455999998754
No 241
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.39 E-value=0.054 Score=53.71 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999864
No 242
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.032 Score=59.64 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=39.1
Q ss_pred cccccccccHHHHHHHHhc-----------CCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 185 LDVSEFERGREELFDLLIE-----------GPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
.|+.|.++.+++|.+.+.- +-...+=|-++|++|.|||+||+.+++ +....|
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f 271 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF 271 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence 3388999888888776431 113467788999999999999999998 554443
No 243
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.37 E-value=0.045 Score=54.88 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=65.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc---ccCC----------------cceEEEecCCC-------CH---------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK---FYFD----------------CLAWVRVSIGY-------YF--------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~----------------~~~wv~vs~~~-------~~--------- 252 (706)
-.+++|+|..|+|||||++.+..-..-. -.|+ .+.+ |.|.+ ++
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~--v~Q~~~~~~~~~tv~e~l~~~~~ 111 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGI--VFQDPDNQLFSASVYQDVSFGAV 111 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEE--ECSSGGGTCCSSBHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEE--EEcCcccccccCcHHHHHHHHHH
Confidence 4589999999999999999998632110 0011 1112 22221 11
Q ss_pred ---------HHHHHHHHHhcCCCCCCccccCC-CH-HHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--
Q 045386 253 ---------GKILDDIINSLMPPSRARVIIGE-DY-HLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-- 317 (706)
Q Consensus 253 ---------~~i~~~il~~l~~~~~~~~~~~~-~~-~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-- 317 (706)
.+...++++.++........... +- +...-.|...|-.+.=+|+||.--. |...-..+...+..-
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~ 191 (275)
T 3gfo_A 112 NMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK 191 (275)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHh
Confidence 12234455555543211111122 22 2223455566667777899998766 444434444444321
Q ss_pred CCCcEEEEeeCCccee
Q 045386 318 QNGSRVLILVTDPILL 333 (706)
Q Consensus 318 ~~gs~IivTTR~~~v~ 333 (706)
..|..||++|.+...+
T Consensus 192 ~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 192 ELGITIIIATHDIDIV 207 (275)
T ss_dssp HHCCEEEEEESCCSSG
T ss_pred hCCCEEEEEecCHHHH
Confidence 2277888888876554
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.34 E-value=0.016 Score=67.54 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=36.7
Q ss_pred cccccccHHHHHHHHhc-----------CCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIE-----------GPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..+++|.+++.. .-.....|.|+|.+|+||||||+.+..
T Consensus 206 i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 206 VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred hCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 99999999999888753 112346799999999999999999998
No 245
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.32 E-value=0.022 Score=66.18 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=36.1
Q ss_pred cccccccHHHHHHHHhcC-------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEG-------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..++.+.+.+... ......+-++|.+|+|||++|+.+.+
T Consensus 493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 899999998888887632 12234799999999999999999988
No 246
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.23 E-value=0.046 Score=53.94 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=64.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCc-cc-cCCc--------------ceEEEecCCC------CH-------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHV-KF-YFDC--------------LAWVRVSIGY------YF------------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~-~F~~--------------~~wv~vs~~~------~~------------- 252 (706)
-.+++|+|..|+|||||.+.+..-... .. .|+. +.|+ .|.+ ++
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v--~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYL--SQQQTPPFATPVWHYLTLHQHDKTR 103 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEE--CSCCCCCTTCBHHHHHHTTCSSTTC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEE--CCCCccCCCCcHHHHHHHhhccCCc
Confidence 358999999999999999998863211 10 0110 1222 2211 11
Q ss_pred HHHHHHHHHhcCCCCCCccccCC---CHHHHHHHHHHHhcCC------ceEEEEccCCC--ChhhHHHHHhhcCCC-CCC
Q 045386 253 GKILDDIINSLMPPSRARVIIGE---DYHLKKSILRDYLTNK------KYFIVRDDVFN--DSDIWDDLEEVLPDK-QNG 320 (706)
Q Consensus 253 ~~i~~~il~~l~~~~~~~~~~~~---~~~~~~~~l~~~L~~k------r~LlVlDdvw~--~~~~~~~l~~~l~~~-~~g 320 (706)
.+-..++++.++........... ...+.....+..+.+- +.+|+||.--. |...-..+...+..- ..|
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 183 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG 183 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCC
Confidence 23345566666653211101112 3344444444444332 23899998776 544444444444321 226
Q ss_pred cEEEEeeCCcce
Q 045386 321 SRVLILVTDPIL 332 (706)
Q Consensus 321 s~IivTTR~~~v 332 (706)
..||++|.+...
T Consensus 184 ~tviivtHd~~~ 195 (249)
T 2qi9_C 184 LAIVMSSHDLNH 195 (249)
T ss_dssp CEEEEECSCHHH
T ss_pred CEEEEEeCCHHH
Confidence 778999987644
No 247
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.22 E-value=0.016 Score=55.34 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=32.6
Q ss_pred ccccHHHHHHHHhcC-CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 190 FERGREELFDLLIEG-PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 190 r~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
|++.++.|.+.+... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455667777777653 23568999999999999999999876
No 248
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.21 E-value=0.05 Score=53.88 Aligned_cols=122 Identities=13% Similarity=0.112 Sum_probs=65.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc-cc---CCcceEEEecCCC--------------------------C--HHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK-FY---FDCLAWVRVSIGY--------------------------Y--FGKI 255 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~---F~~~~wv~vs~~~--------------------------~--~~~i 255 (706)
-.+++|+|..|+|||||.+.+..-..-. .. ...+.|+ .|.+ . ..+-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v--~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 108 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFV--PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEE--CSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEE--cCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHH
Confidence 3589999999999999999998642110 00 0111122 1110 0 1123
Q ss_pred HHHHHHhcCCCCCCccccCC---CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCCcEEEEeeC
Q 045386 256 LDDIINSLMPPSRARVIIGE---DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNGSRVLILVT 328 (706)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~---~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~gs~IivTTR 328 (706)
..++++.++........... ...+.. .|...|-.++=+|+||.--. |...-..+...+.. ...|..||++|.
T Consensus 109 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv-~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 109 AMQALDYLNLTHLAKREFTSLSGGQRQLI-LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp HHHHHHHTTCGGGTTSBGGGSCHHHHHHH-HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEES
T ss_pred HHHHHHHcCChHHhcCChhhCCHHHHHHH-HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45566666543211101122 233333 44455556667899998776 54444444444432 122677899998
Q ss_pred Ccce
Q 045386 329 DPIL 332 (706)
Q Consensus 329 ~~~v 332 (706)
+...
T Consensus 188 d~~~ 191 (253)
T 2nq2_C 188 QPNQ 191 (253)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7544
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.11 E-value=0.055 Score=62.29 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=59.6
Q ss_pred cccccccccHHHHHHHHh----cCC-------CCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHH
Q 045386 185 LDVSEFERGREELFDLLI----EGP-------SGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFG 253 (706)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~----~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 253 (706)
.|+.|.++.+++|.+++. ..+ ...+-|-++|.+|.|||+||+.+++ +...+| +.|.. .
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~------~ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING------P 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEH------H
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEh------H
Confidence 338899999888877653 221 2457789999999999999999999 554443 22321 1
Q ss_pred HHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC
Q 045386 254 KILDDIINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 254 ~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
+ ++.... . .+...+...+....+....+|++|++..
T Consensus 273 ~----l~sk~~---g------ese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 273 E----IMSKLA---G------ESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp H----HHSSCT---T------HHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred H----hhcccc---h------HHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 1 111110 0 0334444455555566789999999854
No 250
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.09 E-value=0.035 Score=57.29 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcccc----CCcceEEEecCCCCHHHHHHHHHHhcCCCCCC---ccc-cCC-CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFY----FDCLAWVRVSIGYYFGKILDDIINSLMPPSRA---RVI-IGE-DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~---~~~-~~~-~~~ 278 (706)
-.++.|+|.+|+||||||.++......... =..++|++....++..++. .+++.++..... ... ... +.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999998864222211 1357899888878777665 345666543210 000 011 333
Q ss_pred ---HHHHHHHHHhc--CCceEEEEccCCC
Q 045386 279 ---LKKSILRDYLT--NKKYFIVRDDVFN 302 (706)
Q Consensus 279 ---~~~~~l~~~L~--~kr~LlVlDdvw~ 302 (706)
++...+...++ .+--+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 34556666664 4566999998754
No 251
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.01 E-value=0.063 Score=53.58 Aligned_cols=122 Identities=9% Similarity=0.031 Sum_probs=64.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc---ccCC-----------cceEEEecCCC-------CH--------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK---FYFD-----------CLAWVRVSIGY-------YF-------------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~-----------~~~wv~vs~~~-------~~-------------- 252 (706)
-.+++|+|..|+|||||.+.+..-..-. -.|+ .+.+ +.|.+ ++
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~--v~q~~~~~~~~~tv~enl~~~~~~~~~~ 110 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI--AFQYPEDQFFAERVFDEVAFAVKNFYPD 110 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEE--ECSSGGGGCCCSSHHHHHHHTTTTTCTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEE--EeccchhhcCCCcHHHHHHHHHHhcCCH
Confidence 4589999999999999999998632110 0011 1122 22221 11
Q ss_pred ---HHHHHHHHHhcCCC--CCCccccCC---CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC-CCCc
Q 045386 253 ---GKILDDIINSLMPP--SRARVIIGE---DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK-QNGS 321 (706)
Q Consensus 253 ---~~i~~~il~~l~~~--~~~~~~~~~---~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~-~~gs 321 (706)
.+-..++++.++.. ......... ...+. -.|...|-.+.=+|+||.--. |...-..+...+..- ..|.
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qR-v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 189 (266)
T 2yz2_A 111 RDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRR-VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK 189 (266)
T ss_dssp SCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHH-HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHH-HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 12234455555543 110001111 22222 344555556667889998776 544444444444321 1267
Q ss_pred EEEEeeCCcce
Q 045386 322 RVLILVTDPIL 332 (706)
Q Consensus 322 ~IivTTR~~~v 332 (706)
.||++|.+...
T Consensus 190 tii~vtHd~~~ 200 (266)
T 2yz2_A 190 TVILISHDIET 200 (266)
T ss_dssp EEEEECSCCTT
T ss_pred EEEEEeCCHHH
Confidence 78889887644
No 252
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.91 E-value=0.033 Score=65.62 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=35.7
Q ss_pred cccccccHHHHHHHHhcC-------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEG-------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..++.+...+... +.....+.|+|..|+|||++|+.+.+
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 799999888888777531 12246889999999999999999987
No 253
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.061 Score=56.91 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=40.7
Q ss_pred CCccccccccccHHHHHHHHhc----C-------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC
Q 045386 182 QHWLDVSEFERGREELFDLLIE----G-------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF 238 (706)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (706)
..|.|+.|.++.+++|.+.+.- . -...+=|-++|++|.|||.||+.+++ +....|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 3444589999988888776532 1 13457789999999999999999999 444443
No 254
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.84 E-value=0.059 Score=57.16 Aligned_cols=122 Identities=12% Similarity=0.114 Sum_probs=59.8
Q ss_pred ccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccccceeee-c-CccCCcc-hhcCCccCc
Q 045386 547 LENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNF-G-SITLPAP-PKNYSSSLK 621 (706)
Q Consensus 547 ~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l-~-~~~lp~~-i~~~l~~L~ 621 (706)
|..+..|+.+.+..+. ..++. .+.++.+|+.+.+. +.+..++. .|.++.+|+.+.+ . ...+... |. .+++|+
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~-~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFA-GCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCTTCC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhh-CCCCCC
Confidence 4455556666554432 22322 34555666666664 23445544 4555666666666 2 2234333 44 566666
Q ss_pred ccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEEEEee
Q 045386 622 NLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECLKLVN 678 (706)
Q Consensus 622 ~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 678 (706)
.+.+-.. ... -....+.++++|+.+.+.++. .....+.....|+.+.+..
T Consensus 338 ~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~-----~~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 338 RIAIPSS-VTK-IPESAFSNCTALNNIEYSGSR-----SQWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp EEEECTT-CCB-CCGGGGTTCTTCCEEEESSCH-----HHHHTCBCCCCC-------
T ss_pred EEEECcc-cCE-EhHhHhhCCCCCCEEEECCce-----eehhhhhccCCCCEEEeCC
Confidence 6654221 111 134567777888887776542 1224566667777777754
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.82 E-value=0.08 Score=55.01 Aligned_cols=96 Identities=7% Similarity=0.028 Sum_probs=58.7
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcCCCccc----cCCcceEEEecCCCCHHHHHHHHHHhcCCCCCC---cc---ccC-
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNNNHVKF----YFDCLAWVRVSIGYYFGKILDDIINSLMPPSRA---RV---IIG- 274 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~---~~---~~~- 274 (706)
+.-.++.|+|.+|+||||||.++........ .=..++|++....++..++. .++..++..... .. ...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 3467999999999999999999887432221 12358899888877877654 345555443110 00 001
Q ss_pred C-CHHHHHHHHHHHhc---CCceEEEEccCCC
Q 045386 275 E-DYHLKKSILRDYLT---NKKYFIVRDDVFN 302 (706)
Q Consensus 275 ~-~~~~~~~~l~~~L~---~kr~LlVlDdvw~ 302 (706)
. ...++...+.+.+. .+--+||+|.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1 22244445555554 4566999998754
No 256
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.77 E-value=0.046 Score=54.93 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=33.0
Q ss_pred ccccccccccHHHHHHHHhc--C-------C-CCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 184 WLDVSEFERGREELFDLLIE--G-------P-SGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+.+++|.++.++++.+.... . + .-.+-+.|+|.+|+||||||+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 33489988777666554321 1 0 01122899999999999999999983
No 257
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.76 E-value=0.038 Score=60.31 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=34.9
Q ss_pred CccccccccccHHHHHHHHh---cCC-------CCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 183 HWLDVSEFERGREELFDLLI---EGP-------SGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.+.+++|.++.+.++.+... ... .-.+-|.|+|.+|+||||||+.+...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34459999887777765542 210 11223899999999999999999983
No 258
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.65 E-value=0.094 Score=55.54 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=6.5
Q ss_pred hcCCCCCCcEEEEe
Q 045386 664 SLCELHKLECLKLV 677 (706)
Q Consensus 664 ~l~~l~~L~~L~L~ 677 (706)
++.++.+|+.+.+.
T Consensus 361 aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 361 AFQGCINLKKVELP 374 (394)
T ss_dssp TBTTCTTCCEEEEE
T ss_pred HhhCCCCCCEEEEC
Confidence 44444444444443
No 259
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.63 E-value=0.029 Score=56.84 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.1
Q ss_pred CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 205 PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 205 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998876
No 260
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.58 E-value=0.045 Score=56.33 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=59.2
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccc---------cC-----CcceEEEecCCCCHHHHHHHHHHhcCCCCCC---
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKF---------YF-----DCLAWVRVSIGYYFGKILDDIINSLMPPSRA--- 269 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~--- 269 (706)
.-.++-|.|.+|+||||||.++........ .. ..++|++....++..++.. +++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 357999999999999999998876422211 11 3688998888887777664 45555543210
Q ss_pred ccc-cCC-CHH---HHHHHHHHHhcC--CceEEEEccCCC
Q 045386 270 RVI-IGE-DYH---LKKSILRDYLTN--KKYFIVRDDVFN 302 (706)
Q Consensus 270 ~~~-~~~-~~~---~~~~~l~~~L~~--kr~LlVlDdvw~ 302 (706)
... ... +.+ ++...+.+.+.. +--+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 000 011 333 345566666654 456999998754
No 261
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.45 E-value=0.062 Score=54.48 Aligned_cols=86 Identities=8% Similarity=0.070 Sum_probs=55.4
Q ss_pred EEEEEcCCCchhhHHHHHHHcCCCccccC--CcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHH-HHHHH
Q 045386 210 VIAILDSNGFDKTVFAADIYNNNHVKFYF--DCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLK-KSILR 285 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~-~~~l~ 285 (706)
++-|.|.+|+||||||.++.. .....+ ..++||+.-..++.. .+++++.....-.-... +.+++ ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 789999999999999988876 333332 357888877777753 36777765332110111 55555 44333
Q ss_pred HH--h-cCCceEEEEccCCC
Q 045386 286 DY--L-TNKKYFIVRDDVFN 302 (706)
Q Consensus 286 ~~--L-~~kr~LlVlDdvw~ 302 (706)
.. + +++.-+||+|-|..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 33 3 34678999998865
No 262
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.43 E-value=0.039 Score=51.96 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCce-EEEEccCCC----ChhhHHHHHhhcCCCCCCcEEEEeeCCcc
Q 045386 280 KKSILRDYLTNKKY-FIVRDDVFN----DSDIWDDLEEVLPDKQNGSRVLILVTDPI 331 (706)
Q Consensus 280 ~~~~l~~~L~~kr~-LlVlDdvw~----~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 331 (706)
....+++.+.+.+| |||||.+-. .....+++...+........||+|+|+..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 44556666665555 999999832 12334555555555555678999999863
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.41 E-value=0.02 Score=53.88 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+|+|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 264
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.35 E-value=0.12 Score=53.67 Aligned_cols=124 Identities=9% Similarity=0.142 Sum_probs=69.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc---cCC-----------------cceEEEecCCC------CH---------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF---YFD-----------------CLAWVRVSIGY------YF--------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~-----------------~~~wv~vs~~~------~~--------- 252 (706)
-.+++|+|..|+|||||.+.+..-.+-.. .|+ .+.+ |.|.+ ++
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~--v~Q~~~l~~~~TV~env~~~~~ 131 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGM--IFQHFNLLSSRTVFGNVALPLE 131 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEE--ECSSCCCCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEE--EeCCCccCCCCCHHHHHHHHHH
Confidence 46899999999999999999986322110 011 1122 22221 11
Q ss_pred ---------HHHHHHHHHhcCCCCCCccccCC-C-HHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--C
Q 045386 253 ---------GKILDDIINSLMPPSRARVIIGE-D-YHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--K 317 (706)
Q Consensus 253 ---------~~i~~~il~~l~~~~~~~~~~~~-~-~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~ 317 (706)
.+-..++++.++........... + -+...-.|...|-.+.=+|++|.--. |...-..+...+.. .
T Consensus 132 ~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~ 211 (366)
T 3tui_C 132 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211 (366)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 12234556666553221111122 2 22233456666777778899998766 44444444444432 2
Q ss_pred CCCcEEEEeeCCccee
Q 045386 318 QNGSRVLILVTDPILL 333 (706)
Q Consensus 318 ~~gs~IivTTR~~~v~ 333 (706)
..|..||++|.+..++
T Consensus 212 ~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 212 RLGLTILLITHEMDVV 227 (366)
T ss_dssp HSCCEEEEEESCHHHH
T ss_pred hCCCEEEEEecCHHHH
Confidence 3477899999887654
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.31 E-value=0.019 Score=52.79 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 266
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.26 E-value=0.3 Score=49.21 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=31.9
Q ss_pred HHHHHhcCCceEEEEccCCC--ChhhHHHHHhh-cCCCCCCcEEEEeeCCcce
Q 045386 283 ILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEV-LPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 283 ~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~-l~~~~~gs~IivTTR~~~v 332 (706)
.|...|-.+.=+++||.--. |...-..+... +.....|..||++|.+...
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~ 221 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 44445555666889998776 55556666654 3332347788888887544
No 267
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.26 E-value=0.048 Score=56.87 Aligned_cols=110 Identities=10% Similarity=-0.012 Sum_probs=64.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCC--ccccCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRA--RVIIGEDYHLKKSILR 285 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~--~~~~~~~~~~~~~~l~ 285 (706)
-.+|+|+|..|+||||+.+.+.. .+...-...+ +.+.++.... ....... +.............+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La 190 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALR 190 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhh---------hhccccceeeeeeccccCCHHHHHH
Confidence 35999999999999999998876 3322212222 2222221100 0000000 0000001123445788
Q ss_pred HHhcCCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCccee
Q 045386 286 DYLTNKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPILL 333 (706)
Q Consensus 286 ~~L~~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~ 333 (706)
..|....=+|++|.+.+ .+.++.+.... ..|..||+||.....+
T Consensus 191 ~aL~~~PdvillDEp~d-~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 191 SALREDPDIILVGEMRD-LETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHTTSCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred HHhhhCcCEEecCCCCC-HHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 88888889999999987 77766655543 3466799999877654
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.24 E-value=0.019 Score=53.29 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 269
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.23 E-value=0.021 Score=59.17 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=34.2
Q ss_pred cccccccHHHHHHHHhcC---CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEG---PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..++.+-..+... ......+.++|.+|+||||||+.+.+
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 888877777766555432 22356799999999999999999998
No 270
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.18 E-value=0.054 Score=60.07 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=33.9
Q ss_pred cccccccHHHHHHHHhc----CCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIE----GPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.++.+..+.+.+.- ......++.++|.+|+||||||+.+..
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 78888777777554431 122456899999999999999999998
No 271
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.13 E-value=0.022 Score=53.23 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999987
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.11 E-value=0.023 Score=54.04 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.++|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 273
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.10 E-value=0.17 Score=52.48 Aligned_cols=123 Identities=20% Similarity=0.168 Sum_probs=66.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc---ccCCc------------ceEEEecCCC------CHH-------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK---FYFDC------------LAWVRVSIGY------YFG------------- 253 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~------------~~wv~vs~~~------~~~------------- 253 (706)
-.+++|+|..|+|||||.+.+..-.+-. -.|+. +.+ |.|.+ ++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~--v~Q~~~l~~~ltv~enl~~~~~~~~~~ 103 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF--VYQNYSLFPHMNVKKNLEFGMRMKKIK 103 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEE--ECTTCCCCTTSCHHHHHHHHHHHHCCC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEE--EecCcccCCCCCHHHHHHHHHHHcCCC
Confidence 4589999999999999999998642211 01111 112 22321 111
Q ss_pred --HHHHHHHHhcCCCCCCccccCC-CH-HHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCCcEEEE
Q 045386 254 --KILDDIINSLMPPSRARVIIGE-DY-HLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNGSRVLI 325 (706)
Q Consensus 254 --~i~~~il~~l~~~~~~~~~~~~-~~-~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~gs~Iiv 325 (706)
+-..++++.++........... +- +...-.|...|-.+.=+|+||.--. |...-..+...+.. ...|..||+
T Consensus 104 ~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~ 183 (348)
T 3d31_A 104 DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183 (348)
T ss_dssp CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 2234566666654321111122 22 2223355666667777899998766 43333333333332 123667888
Q ss_pred eeCCcce
Q 045386 326 LVTDPIL 332 (706)
Q Consensus 326 TTR~~~v 332 (706)
+|.+...
T Consensus 184 vTHd~~~ 190 (348)
T 3d31_A 184 ITHDQTE 190 (348)
T ss_dssp EESCHHH
T ss_pred EeCCHHH
Confidence 8888654
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.09 E-value=0.15 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988876
No 275
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.98 E-value=0.087 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++|+++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998876
No 276
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.97 E-value=0.1 Score=54.17 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=65.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc---cCC------------cceEEEecCCC------CH--------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF---YFD------------CLAWVRVSIGY------YF-------------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~------------~~~wv~vs~~~------~~-------------- 252 (706)
-.+++|+|..|+|||||.+.+..-..... .|+ .+.+ |.|.+ ++
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~--v~Q~~~l~~~ltv~eni~~~l~~~~~~ 118 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL--VFQNYALFQHMTVYDNVSFGLREKRVP 118 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE--ECGGGCCCTTSCHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE--EecCcccCCCCCHHHHHHHHHHHcCCC
Confidence 46899999999999999999986321100 011 1122 22221 11
Q ss_pred ----HHHHHHHHHhcCCCCCCccccCC-CH-HHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCCcE
Q 045386 253 ----GKILDDIINSLMPPSRARVIIGE-DY-HLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNGSR 322 (706)
Q Consensus 253 ----~~i~~~il~~l~~~~~~~~~~~~-~~-~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~gs~ 322 (706)
.+-..++++.++........... +- +...-.|...|-.+.=+|+||.--. |...-..+...+.. ...|..
T Consensus 119 ~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 198 (355)
T 1z47_A 119 KDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198 (355)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 12334566666553211101122 22 2223355566666777899998766 43333333333321 122667
Q ss_pred EEEeeCCccee
Q 045386 323 VLILVTDPILL 333 (706)
Q Consensus 323 IivTTR~~~v~ 333 (706)
||++|.+...+
T Consensus 199 vi~vTHd~~~a 209 (355)
T 1z47_A 199 SVFVTHDQEEA 209 (355)
T ss_dssp EEEECSCHHHH
T ss_pred EEEECCCHHHH
Confidence 88888886543
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.95 E-value=0.028 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 278
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.95 E-value=0.22 Score=52.71 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=91.6
Q ss_pred ccccCcccccEEEecCCCCCcCCccccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhcccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFPPGLENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQKL 599 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L 599 (706)
..|.++..|..+.+..+...--...+..+..|+.+.+..+. +|. .+..+.+|+.+.+..+ +..++. .|.++.+|
T Consensus 247 ~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp STTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCC
Confidence 45667777777777665433223446667777777766543 333 3567788888888664 666655 67788889
Q ss_pred ceeee-c-CccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCCCeEEEEccCCcCccchHHhcCCCCCCcEE
Q 045386 600 MHLNF-G-SITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSVRTLRISGDLSYYQSGVSKSLCELHKLECL 674 (706)
Q Consensus 600 ~~L~l-~-~~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 674 (706)
+.+.+ + ...++.. |. ++++|+.+.+... .... ....+..+++|+.+.+..+- ..+..++...++|+.+
T Consensus 323 ~~i~lp~~v~~I~~~aF~-~c~~L~~i~lp~~-l~~I-~~~aF~~C~~L~~i~lp~~~----~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 323 VSIDLPYLVEEIGKRSFR-GCTSLSNINFPLS-LRKI-GANAFQGCINLKKVELPKRL----EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTTCCEECTTTTT-TCTTCCEECCCTT-CCEE-CTTTBTTCTTCCEEEEEGGG----GGGGGGBCTTCEEEEE
T ss_pred CEEEeCCcccEEhHHhcc-CCCCCCEEEECcc-ccEe-hHHHhhCCCCCCEEEECCCC----EEhhheecCCCCCcEE
Confidence 88888 3 2345544 55 7888888876432 1111 45568889999999987542 3334567777777664
No 279
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.93 E-value=0.061 Score=62.46 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=35.5
Q ss_pred cccccccHHHHHHHHhcC-------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEG-------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..++.+...+... +.....+-++|.+|+|||++|+.+.+
T Consensus 460 v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 889998888887776531 12345789999999999999999988
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.89 E-value=0.021 Score=52.67 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 281
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.82 E-value=0.023 Score=57.87 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=35.6
Q ss_pred cccccccHHHHHHHHhcC------------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEG------------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..++.+...+... .....-+-++|.+|+|||++|+.+.+
T Consensus 17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 899999999988877540 11245678999999999999999988
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.75 E-value=0.034 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+|.|+|+.|+||||+++.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 283
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.74 E-value=0.029 Score=53.36 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+++|+|..|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 284
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.73 E-value=0.11 Score=54.10 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccC---C-cceEEEecCCCCHHHHHHHHHHhcCCCCCCc---c----ccCC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYF---D-CLAWVRVSIGYYFGKILDDIINSLMPPSRAR---V----IIGE 275 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~-~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~---~----~~~~ 275 (706)
.-.++.|+|.+|+|||||+..+.......... . .++|++....+...++ ..+++..+.....- . ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 46899999999999999999998742212111 2 3488876655544443 33555443321100 0 0111
Q ss_pred -CHHHHHHHHHHHhc------CCceEEEEccCCC
Q 045386 276 -DYHLKKSILRDYLT------NKKYFIVRDDVFN 302 (706)
Q Consensus 276 -~~~~~~~~l~~~L~------~kr~LlVlDdvw~ 302 (706)
...++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 23445555666664 4677999998866
No 285
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.72 E-value=0.029 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+++|+|.+|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 286
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.68 E-value=0.038 Score=58.00 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=35.4
Q ss_pred cccccccHHHHHHHHh-------------cCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLI-------------EGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..++.+...+. ........|.++|.+|+|||++|+.+.+
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 7899998988888773 1111346789999999999999999998
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.66 E-value=0.034 Score=51.44 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999976
No 288
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.62 E-value=0.082 Score=57.74 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=35.0
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..++.+...+..+. -|-++|.+|+|||+||+.+.+
T Consensus 24 ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGG
T ss_pred hHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHH
Confidence 8899998988888877643 678999999999999999998
No 289
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.62 E-value=0.036 Score=52.02 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 290
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.56 E-value=0.096 Score=45.94 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=42.8
Q ss_pred cEEEcccCCcc--ccChhhcCCCCCcEEEccCCCCCccch-hhccccccceeeecC
Q 045386 554 KYLKLNIPSLK--RLPSLLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNFGS 606 (706)
Q Consensus 554 r~L~Ls~~~l~--~lP~~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l~~ 606 (706)
..++-+++.++ .+|..+. .+|++|+|++|.++.+|. .|..+++|+.|++.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 47888999998 9996543 479999999999999988 567899999999943
No 291
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.55 E-value=0.24 Score=51.61 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=65.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc---cCC------------cceEEEecCCC------CH--------------
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF---YFD------------CLAWVRVSIGY------YF-------------- 252 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~------------~~~wv~vs~~~------~~-------------- 252 (706)
-.+++|+|..|+|||||.+.+..-..... .|+ .+.+ |.|.+ ++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~--v~Q~~~l~~~ltv~eni~~~~~~~~~~ 106 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL--VFQNWALYPHMTVYKNIAFPLELRKAP 106 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE--ECTTCCCCTTSCHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE--EecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 46899999999999999999986322100 011 1122 22221 11
Q ss_pred ----HHHHHHHHHhcCCCCCCccccCC-CH-HHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCCcE
Q 045386 253 ----GKILDDIINSLMPPSRARVIIGE-DY-HLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNGSR 322 (706)
Q Consensus 253 ----~~i~~~il~~l~~~~~~~~~~~~-~~-~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~gs~ 322 (706)
.+-..++++.++........... +- +...-.|...|-.+.=+|+||.--. |...-..+...+.. ...|..
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 186 (362)
T 2it1_A 107 REEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGIT 186 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 12234566666654321111122 22 2223355566666777889997655 43333333333322 122667
Q ss_pred EEEeeCCccee
Q 045386 323 VLILVTDPILL 333 (706)
Q Consensus 323 IivTTR~~~v~ 333 (706)
||++|.+...+
T Consensus 187 vi~vTHd~~~a 197 (362)
T 2it1_A 187 TVYVTHDQAEA 197 (362)
T ss_dssp EEEEESCHHHH
T ss_pred EEEECCCHHHH
Confidence 88888886543
No 292
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.54 E-value=0.038 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 293
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.52 E-value=0.033 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 294
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.50 E-value=0.029 Score=52.68 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++++|+|..|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 295
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.47 E-value=0.19 Score=53.72 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++|.++|.+|+||||++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.47 E-value=0.034 Score=52.80 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+|+|+|+.|+||||+++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 297
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.44 E-value=0.036 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEEcCCCchhhHHHHHHHcC
Q 045386 210 VIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998863
No 298
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.42 E-value=0.043 Score=52.33 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|+|.+|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 299
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.41 E-value=0.7 Score=48.70 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=61.7
Q ss_pred hcCCCCCcEEEccCCCCCccch-hhccccccceeee--cCccCCcc-hhcCCccCcccccccccccCCCCchhcCCCCCC
Q 045386 570 LCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNF--GSITLPAP-PKNYSSSLKNLIFISALNPSSCTPDILDRLPSV 645 (706)
Q Consensus 570 i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l--~~~~lp~~-i~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 645 (706)
+.++.+|+.+.+..+. ..++. .+.++++|+.+.+ ....++.. |. .+.+|+.+.+... .... ....+..+++|
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~-~c~~L~~i~lp~~-v~~I-~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSRITELPESVFA-GCISLKSIDIPEG-ITQI-LDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTTT-TCTTCCEEECCTT-CCEE-CTTTTTTCTTC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCCCcccccCceeec-CCCCcCEEEeCCc-ccEe-hHhHhhCCCCC
Confidence 3455667777775542 23333 5667777887777 23356555 44 6777877765321 1111 34457778888
Q ss_pred CeEEEEccCCcCccchHHhcCCCCCCcEEEEeeC
Q 045386 646 RTLRISGDLSYYQSGVSKSLCELHKLECLKLVNE 679 (706)
Q Consensus 646 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 679 (706)
+.+.+-.+ ....-..+|.++.+|+.+.+.++
T Consensus 337 ~~i~ip~s---v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS---VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTT---CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcc---cCEEhHhHhhCCCCCCEEEECCc
Confidence 88887533 22223457788888888888773
No 300
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.39 E-value=0.2 Score=55.23 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.-.+++|+|..|+|||||.+.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3579999999999999999999863
No 301
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.38 E-value=0.06 Score=55.63 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=32.1
Q ss_pred ccccccHHHHHHHHhc--CCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 188 SEFERGREELFDLLIE--GPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 188 vGr~~~~~~i~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
|+.+.-.+++++.+.. .......|.|+|+.|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4455566777776642 123466799999999999999998887
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.37 E-value=0.038 Score=51.79 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.35 E-value=0.028 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 304
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.30 E-value=0.036 Score=52.75 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.30 E-value=0.044 Score=51.42 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 306
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.22 E-value=0.038 Score=52.51 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 307
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.20 E-value=0.071 Score=57.20 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=37.8
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC-CcceEEEecCCC-CHHHHHHHHH
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF-DCLAWVRVSIGY-YFGKILDDII 260 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~i~~~il 260 (706)
.++.|..-- +-..++|+|..|+|||||++.+.. .....+ +.++++-+.+.. ...++..++.
T Consensus 141 ~ID~L~pi~-kGq~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 141 VVDLLAPYI-KGGKIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp HHHHHSCEE-TTCEEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHhhhc-cCCEEEEECCCCCCccHHHHHHHh--hhhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 455554321 123689999999999999999887 333323 345666666654 3445555454
No 308
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.17 E-value=0.046 Score=52.06 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 309
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.16 E-value=0.18 Score=53.38 Aligned_cols=94 Identities=9% Similarity=0.028 Sum_probs=53.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc----cCCcceEEEecCCCCHHHHHHHHHHhcCCCCCC---cccc-CC-CHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF----YFDCLAWVRVSIGYYFGKILDDIINSLMPPSRA---RVII-GE-DYH 278 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~---~~~~-~~-~~~ 278 (706)
-.++.|+|.+|+|||||+..++-...... .-..++|++....++..++ +.+++.++..... ...+ .. +.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 56999999999999999997653212211 2235788877666665554 3466666543210 0000 11 222
Q ss_pred ---HHHHHHHHHhc-CCceEEEEccCCC
Q 045386 279 ---LKKSILRDYLT-NKKYFIVRDDVFN 302 (706)
Q Consensus 279 ---~~~~~l~~~L~-~kr~LlVlDdvw~ 302 (706)
+....+.+.+. .+.-+||+|.+-.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 23333344443 3567899998754
No 310
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.14 E-value=0.054 Score=54.36 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=32.6
Q ss_pred ccccccccccHHHHHHHHhc---C---------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 184 WLDVSEFERGREELFDLLIE---G---------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~---~---------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.++.|.++.+++|.+.+.. . ..... +.++|.+|+||||||+.+..
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 34488888888887765421 0 11122 99999999999999999998
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.14 E-value=0.04 Score=52.22 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|.|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 312
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.13 E-value=0.046 Score=54.05 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999977
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.11 E-value=0.049 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999999988
No 314
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.08 E-value=0.07 Score=57.88 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=34.7
Q ss_pred ccccccccHHHHHH---HHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 186 DVSEFERGREELFD---LLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 186 ~~vGr~~~~~~i~~---~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+++|.++.++.+.. .+..+....+-+-++|.+|+|||++|+.+.+
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 39999988776544 4444433345688999999999999999998
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.08 E-value=0.04 Score=51.73 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.6
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999886
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.08 E-value=0.041 Score=51.47 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 317
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.07 E-value=0.043 Score=50.34 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 318
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.06 E-value=0.062 Score=53.07 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=32.6
Q ss_pred ccccccccccHHHHHHHHhc--C-------C-CCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 184 WLDVSEFERGREELFDLLIE--G-------P-SGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+.+++|.+..+.++.+.... . + .-.+-+.|+|.+|+||||||+.++..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33488888776666544321 1 0 01122899999999999999999983
No 319
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.05 E-value=0.38 Score=53.85 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=67.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc-c--cCCc-ceEEEecCCC------CHHHH--------------HHHHHHhc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK-F--YFDC-LAWVRVSIGY------YFGKI--------------LDDIINSL 263 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~-~~wv~vs~~~------~~~~i--------------~~~il~~l 263 (706)
-.+++|+|..|+|||||++.+..-..-. . .+.. +.++ .|.. ++.+. ..++++.+
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v--~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK--PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEE--CSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEE--ecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 3589999999999999999999742211 1 1111 2222 2221 22222 23455555
Q ss_pred CCCCCCccccCC-CH-HHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCccee
Q 045386 264 MPPSRARVIIGE-DY-HLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPILL 333 (706)
Q Consensus 264 ~~~~~~~~~~~~-~~-~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~ 333 (706)
+........... +- +...-.|...|..+.-+++||.--. |...-..+...+..- ..|..||++|.+...+
T Consensus 460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 460 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 535 (607)
T ss_dssp TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 553221111222 22 2333455666777777899998665 444333344333321 2356788888876544
No 320
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.05 E-value=0.16 Score=54.64 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=63.0
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCC-HHHHHHHHHHhcCCCC------CC
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYY-FGKILDDIINSLMPPS------RA 269 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~il~~l~~~~------~~ 269 (706)
+++.|..-. +-.-++|+|..|+|||+|++.+.++. .+.+-+.++++-+.+... ..++.+++.+.-.... ..
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 455554321 23568999999999999999988732 123446788888888764 5667777765422210 00
Q ss_pred cc---ccCC------CHHHHHHHHHHHhc---CCceEEEEccCCC
Q 045386 270 RV---IIGE------DYHLKKSILRDYLT---NKKYFIVRDDVFN 302 (706)
Q Consensus 270 ~~---~~~~------~~~~~~~~l~~~L~---~kr~LlVlDdvw~ 302 (706)
.. ..+. -.....-.+.++++ +|.+||++||+-.
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00 0011 12233444556664 5899999999854
No 321
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.05 E-value=0.037 Score=52.59 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-++++|+|..|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999976
No 322
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.03 E-value=0.047 Score=52.29 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999999999873
No 323
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.01 E-value=0.071 Score=54.90 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|+|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998886
No 324
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.99 E-value=0.045 Score=52.97 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|+|+|..|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 325
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.97 E-value=0.046 Score=52.24 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999987
No 326
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.97 E-value=0.065 Score=55.82 Aligned_cols=51 Identities=14% Similarity=0.021 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccc---cCCcceEEEecCCC
Q 045386 196 ELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKF---YFDCLAWVRVSIGY 250 (706)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~ 250 (706)
++++.+..-. .-..++|+|..|+|||||++.+.+ .+.. .+. ++++-+.+..
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCee-EEEEEecCCh
Confidence 3455554422 245899999999999999999887 3322 233 3356666654
No 327
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.91 E-value=0.056 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.|.|+.|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999986
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.87 E-value=0.056 Score=55.33 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999999887
No 329
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.86 E-value=0.058 Score=49.15 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+++++|..|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999987
No 330
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.86 E-value=0.05 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999994
No 331
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.85 E-value=0.26 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988887
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.84 E-value=0.054 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.84 E-value=0.054 Score=50.67 Aligned_cols=24 Identities=29% Similarity=0.119 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
....|.|+|+.|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 334
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.84 E-value=0.042 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999986
No 335
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.81 E-value=0.039 Score=52.57 Aligned_cols=24 Identities=8% Similarity=0.286 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 336
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.80 E-value=0.052 Score=53.75 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5799999999999999999986
No 337
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.80 E-value=0.079 Score=54.26 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
....+|+|.|..|+||||+++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999876
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.72 E-value=0.096 Score=52.89 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.71 E-value=0.054 Score=49.88 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 340
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.70 E-value=0.042 Score=50.83 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.|+|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.69 E-value=0.054 Score=50.92 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.67 E-value=0.058 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.|+|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 343
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.65 E-value=0.079 Score=52.40 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=27.8
Q ss_pred HHHHHHHHhcC---CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 194 REELFDLLIEG---PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 194 ~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+++.+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44455555443 23468999999999999999999987
No 344
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.60 E-value=0.23 Score=54.82 Aligned_cols=124 Identities=16% Similarity=0.174 Sum_probs=65.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCcc-c--cCCc-ceEEEecCCC------CHHHHHH--------------HHHHhc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVK-F--YFDC-LAWVRVSIGY------YFGKILD--------------DIINSL 263 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~~-~~wv~vs~~~------~~~~i~~--------------~il~~l 263 (706)
-.+++|+|..|+|||||++.++.-.+.. . .+.. +.+ +.|.. ++.+++. ++++.+
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~--v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY--KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEE--ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEE--EecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 3589999999999999999999743211 1 1121 222 23321 2333322 222222
Q ss_pred CCCCCCccccCC-C-HHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCC--CCCcEEEEeeCCccee
Q 045386 264 MPPSRARVIIGE-D-YHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDK--QNGSRVLILVTDPILL 333 (706)
Q Consensus 264 ~~~~~~~~~~~~-~-~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~ 333 (706)
+........... + -+...-.|...|..+.-+|+||.--+ |...-..+...+..- ..|..||++|.+...+
T Consensus 390 ~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~ 465 (538)
T 1yqt_A 390 GIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 465 (538)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 221110001122 2 23333456667777788999998766 444444444444321 2356788888775543
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.59 E-value=0.06 Score=50.21 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-..|.+.|+.|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 346
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.59 E-value=0.085 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999998873
No 347
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.57 E-value=0.067 Score=52.59 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 348
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.65 Score=51.92 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 469999999999999999999863
No 349
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.53 E-value=0.062 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 350
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.51 E-value=0.14 Score=54.81 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=61.1
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCC-HHHHHHHHHHhcCCC--C---CC
Q 045386 196 ELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYY-FGKILDDIINSLMPP--S---RA 269 (706)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~il~~l~~~--~---~~ 269 (706)
++++.|..-. +-.-++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+... +.++.+++.+.=... . ..
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 3566665321 23578999999999999999988732 123335577787877653 566777776542221 0 00
Q ss_pred cc---ccCCC------HHHHHHHHHHHh---cCCceEEEEccCCC
Q 045386 270 RV---IIGED------YHLKKSILRDYL---TNKKYFIVRDDVFN 302 (706)
Q Consensus 270 ~~---~~~~~------~~~~~~~l~~~L---~~kr~LlVlDdvw~ 302 (706)
.. ..+.. .....-.+.+++ ++|..||++||+-.
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00 01111 112223334444 46899999999754
No 351
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.50 E-value=0.068 Score=55.12 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=34.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|++..++.+...+..+. -+-++|.+|+|||+||+.+.+
T Consensus 29 i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 29 VVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 8899999988888887642 578999999999999999988
No 352
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.49 E-value=0.048 Score=52.63 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 353
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.48 E-value=0.049 Score=50.37 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.++++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999887
No 354
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.47 E-value=0.28 Score=52.27 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 355
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.41 E-value=0.046 Score=51.01 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 356
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.34 E-value=0.34 Score=49.55 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=36.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSL 263 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l 263 (706)
-.++.|.|.+|+||||+|..+..+...+. ..++|++.- -...++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 46899999999999999988876422222 456666543 55667777766553
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.33 E-value=0.051 Score=49.97 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 358
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.32 E-value=0.067 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 359
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.31 E-value=0.052 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=17.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 360
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.31 E-value=0.077 Score=50.98 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=27.6
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 192 RGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 192 ~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+..+.+.+.+... +..+|.|+|.+|+|||||+..+..
T Consensus 16 ~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 16 RLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3444444444332 478999999999999999999887
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.28 E-value=0.06 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 362
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.26 E-value=0.085 Score=51.83 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 363
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.26 E-value=0.069 Score=50.85 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 364
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.24 E-value=0.47 Score=51.27 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=27.1
Q ss_pred cccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 191 ERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 191 ~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...++.+.+.+...+ ..+.|.|.+|.||||++..+..
T Consensus 31 ~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp HHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 344444555555433 3899999999999999988887
No 365
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.23 E-value=0.15 Score=49.17 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=34.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCcc---c-cCCcceEEEecCCCCHHHHHHHHHHhcC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVK---F-YFDCLAWVRVSIGYYFGKILDDIINSLM 264 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~~il~~l~ 264 (706)
.-.+++|+|.+|+|||||++.+....... . .-...+|+.-...+.... ...+++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 35799999999999999999997621111 1 123467776544444333 333444443
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.21 E-value=0.073 Score=50.22 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
No 367
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.20 E-value=0.064 Score=50.27 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.9
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 368
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.18 E-value=0.068 Score=52.88 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999985
No 369
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.18 E-value=0.82 Score=49.31 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=33.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDII 260 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il 260 (706)
-.++.|.|.+|+||||||..+..+...... ..++|++. .-...++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~--E~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSL--EMSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEES--SSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEEC--CCCHHHHHHHHH
Confidence 468999999999999999998874222111 24666654 334566666654
No 370
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.15 E-value=0.067 Score=50.60 Aligned_cols=24 Identities=8% Similarity=0.387 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.-++|.|+|..|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999986
No 371
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.13 E-value=0.56 Score=44.59 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=47.6
Q ss_pred EEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCC---cccc-CC-CHHHHHHHH
Q 045386 210 VIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRA---RVII-GE-DYHLKKSIL 284 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~---~~~~-~~-~~~~~~~~l 284 (706)
+|.|.|++|+||+|.|+.+... |. ...++ ..+++++-++.-+.-... .... .- ..+-+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5789999999999999999872 32 12232 233333322210000000 0000 11 345566777
Q ss_pred HHHhcCCceEEEEccCCCChhhHHHHHhh
Q 045386 285 RDYLTNKKYFIVRDDVFNDSDIWDDLEEV 313 (706)
Q Consensus 285 ~~~L~~kr~LlVlDdvw~~~~~~~~l~~~ 313 (706)
.+.+..... +|||..-....+.+.+...
T Consensus 69 ~~~l~~~~~-~ilDGfPRt~~Qa~~l~~~ 96 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPRTVKQAEALDEM 96 (206)
T ss_dssp HHHCCSSSC-EEEESCCCSHHHHHHHHHH
T ss_pred HHhhccCCc-eEecCCchhHHHHHHHHhh
Confidence 888866554 6789876534444444333
No 372
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.12 E-value=0.14 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 373
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.09 E-value=0.076 Score=55.10 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=32.9
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 184 WLDVSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.+++|.+..+..+...+.... ..-|-|+|.+|+|||++|+.+.+
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 3349999886665544444322 22388999999999999999997
No 374
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.09 E-value=0.11 Score=54.14 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 194 REELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3445555554445688999999999999999988865
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.07 E-value=0.043 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|+|+|..|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 376
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.05 E-value=0.019 Score=53.95 Aligned_cols=22 Identities=14% Similarity=-0.052 Sum_probs=18.3
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+++.|+|..|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999855554
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.04 E-value=0.073 Score=48.66 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=19.7
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 378
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.02 E-value=0.39 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999888775
No 379
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.01 E-value=2.2 Score=45.71 Aligned_cols=55 Identities=18% Similarity=0.033 Sum_probs=36.6
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLM 264 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~ 264 (706)
.-.++.|.|.+|+||||+|..+..+...... ..++|++. .-+..++...++....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~sl--E~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSL--EMPAAQLTLRMMCSEA 253 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEES--SSCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEEC--CCCHHHHHHHHHHHHc
Confidence 3468999999999999999888774222111 24666654 4456677777765443
No 380
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.94 E-value=0.077 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
. .+++|+|..|+|||||.+.+..-
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCC
Confidence 5 79999999999999999999863
No 381
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.92 E-value=0.064 Score=50.51 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.9
Q ss_pred EEEEEcCCCchhhHHHHHHHcC
Q 045386 210 VIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988863
No 382
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.64 Score=51.98 Aligned_cols=125 Identities=13% Similarity=0.069 Sum_probs=66.8
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccc--cCC--cceEEEe------------------cCCCCHHHHHHHHHHhcCCC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKF--YFD--CLAWVRV------------------SIGYYFGKILDDIINSLMPP 266 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~--~~~wv~v------------------s~~~~~~~i~~~il~~l~~~ 266 (706)
.+++|+|..|+|||||++.+..-.+-.. ... .+.++.- ...+.......++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 5799999999999999999986422111 000 0111100 00111123344556666544
Q ss_pred CCCccccCC-CH-HHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCCcEEEEeeCCccee
Q 045386 267 SRARVIIGE-DY-HLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNGSRVLILVTDPILL 333 (706)
Q Consensus 267 ~~~~~~~~~-~~-~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~ 333 (706)
......... +- +...-.|...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+...+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 321112223 32 3333466777778888999998655 43333333333322 12366788888886554
No 383
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.90 E-value=0.13 Score=55.46 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.-.+|+|+|.+|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467999999999999999999886
No 384
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.87 E-value=0.059 Score=52.41 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=16.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHH-c
Q 045386 208 LSVIAILDSNGFDKTVFAADIY-N 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~-~ 230 (706)
-.+++|+|..|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.86 E-value=0.079 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|+|.+|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999998874
No 386
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.85 E-value=0.076 Score=51.28 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.-.+++|+|..|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3569999999999999999999873
No 387
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.84 E-value=0.13 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|+|..|+||||+++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999998876
No 388
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.84 E-value=0.13 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++|.|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 468999999999999999998887
No 389
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.81 E-value=0.29 Score=50.93 Aligned_cols=35 Identities=23% Similarity=0.109 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 195 EELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 195 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-++++.|..-. +-.-++|+|..|+|||+|++.+.+
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence 35667776432 245789999999999999998887
No 390
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.79 E-value=0.079 Score=50.18 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.|+|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 391
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.78 E-value=0.32 Score=53.64 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=63.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccc---cCCcceEEEecCCC------CHHHHH---------------HHHHHhc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKF---YFDCLAWVRVSIGY------YFGKIL---------------DDIINSL 263 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~------~~~~i~---------------~~il~~l 263 (706)
-.+++|+|..|+|||||++.++.-.+... .++..-.-.+.+.. .+.+.+ .++++.+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~ 373 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRL 373 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHc
Confidence 35899999999999999999987422110 12211111222221 222222 2222222
Q ss_pred CCCCCCccccCC-C-HHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCC--CCCCcEEEEeeCCccee
Q 045386 264 MPPSRARVIIGE-D-YHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPD--KQNGSRVLILVTDPILL 333 (706)
Q Consensus 264 ~~~~~~~~~~~~-~-~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~ 333 (706)
+........... + -+...-.|...|..+.=+|+||.--. |...-..+...+.. ...|..||++|.+...+
T Consensus 374 ~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~ 449 (538)
T 3ozx_A 374 NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH 449 (538)
T ss_dssp TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 221100001122 2 22333456666777777899998665 43333333333322 12366788888776544
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.68 E-value=0.091 Score=48.72 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 393
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.63 E-value=0.09 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999974
No 394
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.62 E-value=0.082 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIY 229 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~ 229 (706)
-.+++|+|.+|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4699999999999999999887
No 395
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.60 E-value=0.1 Score=54.98 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=33.8
Q ss_pred cccccccHHHHHHHHhc----------------------------CCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIE----------------------------GPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.+..++.|...+.. .......+.++|.+|+|||++|+.+.+
T Consensus 23 viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 23 VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 78888888888776620 011234688999999999999999998
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.58 E-value=0.089 Score=50.25 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 397
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.56 E-value=0.081 Score=50.44 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 398
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.54 E-value=0.1 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+++|+|.+|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999998875
No 399
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.54 E-value=0.082 Score=51.69 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 400
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.53 E-value=0.075 Score=51.51 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+++|+|..|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.52 E-value=0.1 Score=50.12 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 402
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.51 E-value=0.1 Score=50.14 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+||.|.|++|+||+|.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999999999999987
No 403
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.51 E-value=0.083 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+++|+|..|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999885
No 404
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.45 E-value=0.1 Score=53.31 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 405
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.45 E-value=0.084 Score=51.14 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.43 E-value=0.41 Score=50.09 Aligned_cols=100 Identities=20% Similarity=0.131 Sum_probs=51.3
Q ss_pred ccccCcccccEEEecCCCCCcCC-ccccccccCcEEEcccCCccccChh-hcCCCCCcEEEccCCCCCccch-hhccccc
Q 045386 522 NFCKKFKHLRVLNFGSAVLDQFP-PGLENLFLLKYLKLNIPSLKRLPSL-LCTLLNLETLEMPSSYIDQSPE-DIWMMQK 598 (706)
Q Consensus 522 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~Lr~L~Ls~~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~ 598 (706)
..|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+.. .++.++.. +.++.+|+.+.+.++.+..++. .|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34555556666665543 33333 2345556666666643 24444432 4556666666666655655554 4556666
Q ss_pred cceeee-c-CccCCcc-hhcCCccCcccc
Q 045386 599 LMHLNF-G-SITLPAP-PKNYSSSLKNLI 624 (706)
Q Consensus 599 L~~L~l-~-~~~lp~~-i~~~l~~L~~L~ 624 (706)
|+.+.+ + ...++.. |. ++++|+.+.
T Consensus 312 L~~i~lp~~l~~I~~~aF~-~C~~L~~i~ 339 (379)
T 4h09_A 312 LSSVTLPTALKTIQVYAFK-NCKALSTIS 339 (379)
T ss_dssp CCEEECCTTCCEECTTTTT-TCTTCCCCC
T ss_pred CCEEEcCccccEEHHHHhh-CCCCCCEEE
Confidence 666655 2 1233322 33 455555544
No 407
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.38 E-value=0.094 Score=49.27 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=19.8
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|+|.|..|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 408
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.28 E-value=0.11 Score=55.37 Aligned_cols=92 Identities=12% Similarity=0.207 Sum_probs=52.8
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccccCC----cceEEEecCCC-CHHHHHHHHHHhcCCCCCCc-c-ccCCC-----
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFYFD----CLAWVRVSIGY-YFGKILDDIINSLMPPSRAR-V-IIGED----- 276 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~i~~~il~~l~~~~~~~-~-~~~~~----- 276 (706)
.-++|.|..|+|||+|+.++.+.... +-+ .++++-+.+.. .+.++.+++.+.=.....-- . ..+..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 34789999999999999999985433 222 46666677654 35566666544210000000 0 00111
Q ss_pred -HHHHHHHHHHHhc---CCceEEEEccCCC
Q 045386 277 -YHLKKSILRDYLT---NKKYFIVRDDVFN 302 (706)
Q Consensus 277 -~~~~~~~l~~~L~---~kr~LlVlDdvw~ 302 (706)
.....-.+.++++ ++..||++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1122334555553 7899999999854
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.28 E-value=0.1 Score=49.86 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 410
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.23 E-value=0.094 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999988
No 411
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.21 E-value=0.51 Score=55.39 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=66.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCC---cceEEEecCCC-------CH-----------HHHHHHHHHhcCCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFD---CLAWVRVSIGY-------YF-----------GKILDDIINSLMPP 266 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~-------~~-----------~~i~~~il~~l~~~ 266 (706)
-.+++|+|..|+|||||.+.+..- .+. .|+ ..-.+.+.+.+ ++ .+-..++++.++..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 458999999999999999999841 111 111 00012222221 11 23345567777653
Q ss_pred CC-CccccCC---CHHHHHHHHHHHhcCCceEEEEccCCC--ChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 267 SR-ARVIIGE---DYHLKKSILRDYLTNKKYFIVRDDVFN--DSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 267 ~~-~~~~~~~---~~~~~~~~l~~~L~~kr~LlVlDdvw~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
.. ....... +..+.. .|...|-.+.=+|+||.--+ |...-..+...+.. .|..||++|.+...
T Consensus 539 ~~~~~~~~~~LSGGqkQRv-aLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~ 607 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKL-ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVF 607 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHH-HHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHH
T ss_pred hhhhcCCcccCCHHHHHHH-HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHH
Confidence 10 0001122 333333 44555556677889998766 44444445555544 36778888887544
No 412
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.21 E-value=0.11 Score=53.12 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.+||+|.|=|||||||.+..+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998866654
No 413
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.20 E-value=0.56 Score=49.07 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=22.9
Q ss_pred ccccccCcEEEcccCCccccCh-hhcCCCCCcEEEccCCCCCccch-hhccccccceeee
Q 045386 547 LENLFLLKYLKLNIPSLKRLPS-LLCTLLNLETLEMPSSYIDQSPE-DIWMMQKLMHLNF 604 (706)
Q Consensus 547 ~~~L~~Lr~L~Ls~~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lP~-~l~~L~~L~~L~l 604 (706)
+..+..|+.+.+..+ ++.++. .+.++.+|+.+.+..+ +..++. .|.++++|+.+.+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 334444444444432 333322 2334444444444322 333333 3344444444444
No 414
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.18 E-value=0.1 Score=50.31 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.04 E-value=0.083 Score=52.13 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+|.|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 416
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.03 E-value=0.096 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 417
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.96 E-value=0.092 Score=50.65 Aligned_cols=23 Identities=13% Similarity=-0.074 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 418
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.96 E-value=0.11 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999983
No 419
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.94 E-value=0.11 Score=49.79 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.2
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 420
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.94 E-value=0.11 Score=48.14 Aligned_cols=23 Identities=17% Similarity=0.285 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999887
No 421
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.88 E-value=0.16 Score=46.13 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchhhHHHHHHHcC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 422
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.87 E-value=0.1 Score=51.11 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 423
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.82 E-value=0.1 Score=51.97 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 468999999999999999999863
No 424
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.81 E-value=0.11 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999863
No 425
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.80 E-value=0.11 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 426
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.72 E-value=0.12 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999884
No 427
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.68 E-value=0.18 Score=47.49 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=43.8
Q ss_pred ccCcccccEEEecCC-CCC-----cCCccccccccCcEEEcccCCcc-----ccChhhcCCCCCcEEEccCCCCC
Q 045386 524 CKKFKHLRVLNFGSA-VLD-----QFPPGLENLFLLKYLKLNIPSLK-----RLPSLLCTLLNLETLEMPSSYID 587 (706)
Q Consensus 524 ~~~l~~L~~L~L~~~-~l~-----~lp~~~~~L~~Lr~L~Ls~~~l~-----~lP~~i~~L~~L~~L~L~~~~~~ 587 (706)
..+-+.|+.|+|+++ .+. .+-+.+..-++|+.|+|++|.|. .|-..+..-+.|++|+|+.|.++
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 445567888888875 665 23455566678888888888875 34445555677888888888765
No 428
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.67 E-value=0.14 Score=55.19 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=55.3
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHH-HHHHcCCCccccCCc-ceEEEecCCC-CHHHHHHHHHHhcCCCCCCcc--
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFA-ADIYNNNHVKFYFDC-LAWVRVSIGY-YFGKILDDIINSLMPPSRARV-- 271 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~i~~~il~~l~~~~~~~~-- 271 (706)
.++.|..=. +-.-++|+|..|+|||+|| ..+.+. . .-+. ++++-+.+.. .+.++.+++.+.=......-.
T Consensus 165 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 455554311 2346899999999999995 578773 2 2343 4677777764 355666666542111000000
Q ss_pred ccCCC--H----HHHHHHHHHHh--cCCceEEEEccCCC
Q 045386 272 IIGED--Y----HLKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 272 ~~~~~--~----~~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
..++. . ......+.+++ ++|..||++||+..
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 01111 1 11122334444 57999999999854
No 429
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.65 E-value=0.12 Score=49.51 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=19.3
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999976
No 430
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.63 E-value=0.11 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999864
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.59 E-value=0.12 Score=48.92 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=20.0
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+|+|.|..|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999977
No 432
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.48 E-value=0.083 Score=56.21 Aligned_cols=93 Identities=14% Similarity=0.207 Sum_probs=52.8
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCcc--------ccCC-cceEEEecCCC-CHHHHHHHHHHhcCCCCCCcc---ccCC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVK--------FYFD-CLAWVRVSIGY-YFGKILDDIINSLMPPSRARV---IIGE 275 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~i~~~il~~l~~~~~~~~---~~~~ 275 (706)
.-++|.|..|+|||+|+.++.+..... ++=+ .++++-+.+.. .+.++.+++.+. +.-..... ..+.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~-g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT-GALSRSVLFLNKADD 226 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT-SGGGGEEEEEEETTS
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc-ccccceEEEEECCCC
Confidence 457899999999999999998854442 1111 45666676654 345555654442 10000000 0111
Q ss_pred -CH-----HHHHHHHHHHhc---CCceEEEEccCCC
Q 045386 276 -DY-----HLKKSILRDYLT---NKKYFIVRDDVFN 302 (706)
Q Consensus 276 -~~-----~~~~~~l~~~L~---~kr~LlVlDdvw~ 302 (706)
.. ....-.+.++++ ++..||++||+-.
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11 222334555553 6899999999854
No 433
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.46 E-value=0.13 Score=48.32 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
.-.|+|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 5688999999999999999998753
No 434
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.39 E-value=0.14 Score=55.17 Aligned_cols=97 Identities=10% Similarity=0.105 Sum_probs=54.0
Q ss_pred cEEEEEEcCCCchhhHHH-HHHHcCCCccccCCc-ceEEEecCCCC-HHHHHHHHHHhcCC--------CCCCccccCC-
Q 045386 208 LSVIAILDSNGFDKTVFA-ADIYNNNHVKFYFDC-LAWVRVSIGYY-FGKILDDIINSLMP--------PSRARVIIGE- 275 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~il~~l~~--------~~~~~~~~~~- 275 (706)
-.-++|+|..|+|||+|| ..+.+.. . -+. ++++-+.+... +.++.+++.+.=.. ...+++....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 346799999999999995 6888733 2 343 46677777643 44444444331100 0110000000
Q ss_pred ---CHHHHHHHHHHHhcCCceEEEEccCCCChhhHHHH
Q 045386 276 ---DYHLKKSILRDYLTNKKYFIVRDDVFNDSDIWDDL 310 (706)
Q Consensus 276 ---~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~~l 310 (706)
.--.+.+++++ ++|..||++||+......+.++
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsltr~A~A~REi 274 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDLSKQAQAYRQM 274 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecHHHHHHHHHHH
Confidence 11234455555 5899999999986523334444
No 435
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.35 E-value=0.12 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||++.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 436
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.34 E-value=0.14 Score=55.01 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=55.6
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHH-HHHHcCCCccccCCc-ceEEEecCCC-CHHHHHHHHHHhcCCCCCCcc--
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFA-ADIYNNNHVKFYFDC-LAWVRVSIGY-YFGKILDDIINSLMPPSRARV-- 271 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~i~~~il~~l~~~~~~~~-- 271 (706)
.++.|..=. +-.-++|+|..|+|||+|| ..+.+. . .-+. ++++-+.+.. .+.++.+++.+.=......-.
T Consensus 152 aID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccc-cCCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 455554321 2346899999999999995 577773 2 2343 4677777765 355666666543211110000
Q ss_pred ccCCC-HH-----HHHHHHHHHh--cCCceEEEEccCCC
Q 045386 272 IIGED-YH-----LKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 272 ~~~~~-~~-----~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
..++. .. .....+.+++ ++|..||++||+..
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 01111 11 1122333444 57999999999854
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.32 E-value=0.12 Score=51.38 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999864
No 438
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.29 E-value=0.14 Score=52.69 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 439
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.24 E-value=0.22 Score=47.12 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=30.7
Q ss_pred EEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHH
Q 045386 210 VIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIIN 261 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~ 261 (706)
.|.|=|.-|+||||.++.+.+ ..+..-..+++..-.......+..++++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 477889999999999999988 55443333333332222234444555543
No 440
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.14 E-value=0.094 Score=56.15 Aligned_cols=104 Identities=11% Similarity=0.033 Sum_probs=57.3
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCCCccccC--CcceEEEecCCC-CHHHHHHHHHHhcCCCCCCcc--
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYF--DCLAWVRVSIGY-YFGKILDDIINSLMPPSRARV-- 271 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~i~~~il~~l~~~~~~~~-- 271 (706)
.++.|..=. +=.-++|.|..|+|||+|+.++.++......= +.++++-+.+.. .+.++.+++...=......-.
T Consensus 142 ~ID~l~pig-rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLV-RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccc-cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 445444321 23457889999999999999999865442211 246666676654 356666666543111100000
Q ss_pred ccCC------CHHHHHHHHHHHhc---CCceEEEEccCC
Q 045386 272 IIGE------DYHLKKSILRDYLT---NKKYFIVRDDVF 301 (706)
Q Consensus 272 ~~~~------~~~~~~~~l~~~L~---~kr~LlVlDdvw 301 (706)
..+. -.....-.+.++++ ++..||++||+-
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 0011 11122334445554 699999999963
No 441
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.07 E-value=0.18 Score=45.25 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
..|.++|.+|+|||||++.+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 442
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.05 E-value=0.13 Score=51.60 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999863
No 443
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.88 E-value=0.14 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEcCCCchhhHHHHHHHcC
Q 045386 210 VIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-|.|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 444
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.86 E-value=0.13 Score=49.40 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 445
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.85 E-value=0.19 Score=53.65 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=34.4
Q ss_pred cccccccHHHHHHHHhcC------------CCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 187 VSEFERGREELFDLLIEG------------PSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.++.++.+...+... +...+-|.++|++|+||||+|+.+..
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 889888888887666321 11245688999999999999999998
No 446
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.85 E-value=0.13 Score=50.05 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999987
No 447
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.82 E-value=0.21 Score=46.27 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.....|.|+|.+|+|||||.+.+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34677899999999999999999875
No 448
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.82 E-value=0.11 Score=52.49 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=18.6
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 449
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.77 E-value=0.16 Score=49.43 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 450
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.75 E-value=1.1 Score=50.06 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.-.+++|+|..|.|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999863
No 451
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.74 E-value=0.18 Score=49.81 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888999999999999999874
No 452
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.72 E-value=0.16 Score=47.80 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 453
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.61 E-value=0.22 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.-..|.|.|+.|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999988
No 454
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.59 E-value=0.27 Score=44.89 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
+...|.|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999998753
No 455
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.57 E-value=0.16 Score=50.75 Aligned_cols=21 Identities=14% Similarity=0.494 Sum_probs=19.5
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 456
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.51 E-value=0.21 Score=58.65 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=20.2
Q ss_pred CcEEEEEEcCCCchhhHHHHHH
Q 045386 207 GLSVIAILDSNGFDKTVFAADI 228 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v 228 (706)
.-.+++|+|..|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999998
No 457
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.50 E-value=0.19 Score=49.97 Aligned_cols=111 Identities=11% Similarity=0.040 Sum_probs=57.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCCCHHHHHHHHHHH
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGEDYHLKKSILRDY 287 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (706)
-.+++|+|..|+|||||++.+.. .....+...+++.- ++.. .+.+... .+- .....+.+. ..+...+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g-~~i~--~~~~~~~-~~v--~q~~~gl~~--~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIE-DPIE--YVFKHKK-SIV--NQREVGEDT--KSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEE-SSCC--SCCCCSS-SEE--EEEEBTTTB--SCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcC-Ccce--eecCCcc-eee--eHHHhCCCH--HHHHHHHHHH
Confidence 57999999999999999999876 22222223333211 1100 0000000 000 000000111 1234566667
Q ss_pred hcCCceEEEEccCCCChhhHHHHHhhcCCCCCCcEEEEeeCCcce
Q 045386 288 LTNKKYFIVRDDVFNDSDIWDDLEEVLPDKQNGSRVLILVTDPIL 332 (706)
Q Consensus 288 L~~kr~LlVlDdvw~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 332 (706)
|..+.=+|++|...+ ......+.... ..|.-|++||.+..+
T Consensus 95 L~~~p~illlDEp~D-~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HhhCCCEEEeCCCCC-HHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 766777889999875 44443333222 346678899877654
No 458
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.50 E-value=0.19 Score=51.46 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.++|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999998
No 459
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.45 E-value=0.14 Score=51.99 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 56899999999999999999976
No 460
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.44 E-value=0.17 Score=48.47 Aligned_cols=21 Identities=24% Similarity=0.077 Sum_probs=19.4
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 461
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.41 E-value=0.18 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
++.++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999964
No 462
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.41 E-value=0.17 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.5
Q ss_pred EEEEEcCCCchhhHHHHHHHc
Q 045386 210 VIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.23 E-value=0.22 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..+|.|+|.+|+||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988876
No 464
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.23 E-value=0.19 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 465
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.22 E-value=0.27 Score=51.57 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 196 ELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+++-+.-.-+.-.+++|+|.+|.|||||++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444433323457999999999999999999987
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.21 E-value=0.19 Score=48.94 Aligned_cols=25 Identities=24% Similarity=0.040 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999986
No 467
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.21 E-value=0.17 Score=51.32 Aligned_cols=24 Identities=8% Similarity=0.236 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 356899999999999999999987
No 468
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.21 E-value=0.22 Score=46.10 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
...|+++|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999874
No 469
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.15 E-value=0.3 Score=50.98 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
+.++|+|+|.+|+|||||.+.+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 47789999999999999999998753
No 470
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.13 E-value=0.19 Score=50.90 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 471
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.12 E-value=0.59 Score=48.07 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSL 263 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l 263 (706)
-.++.|.|.+|+||||+|..+..+..... ..++|++ -.-...++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fS--lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFS--LEMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEE--SSSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEe--CCCCHHHHHHHHHHHh
Confidence 45899999999999999988877422211 2355554 4556677777776553
No 472
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.08 E-value=0.23 Score=44.56 Aligned_cols=23 Identities=13% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhhHHHHHHHcCC
Q 045386 210 VIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
.|.++|.+|+|||||++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998753
No 473
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.04 E-value=1 Score=43.56 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcCC-CccccCC-cceEEEecCCCCHHHHHHHHHHhcCCCCCCc-
Q 045386 194 REELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNNN-HVKFYFD-CLAWVRVSIGYYFGKILDDIINSLMPPSRAR- 270 (706)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~-~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~- 270 (706)
.++++..+..+ +.+.|+|..|.||||+.....-+. ....... ..+.+......-..++.+.+...++......
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 45555655543 488999999999998665443221 1111122 2333333333334455555655554331110
Q ss_pred --------------cccCC-CHHHHHHHHHHHhcCCceEEEEccCCC
Q 045386 271 --------------VIIGE-DYHLKKSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 271 --------------~~~~~-~~~~~~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
.++-. +.+.+...+...+.+-+ +||+|.+..
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~ 187 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHE 187 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCC-EEEECCTTS
T ss_pred EEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCc-EEEEECCcc
Confidence 01122 56666677766554433 689999876
No 474
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.03 E-value=0.16 Score=53.90 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 196 ELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.+.+.|........+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444433223467999999999999999999987
No 475
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.00 E-value=0.39 Score=55.28 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=56.8
Q ss_pred cccccccHHHHHHHHhcC-----------CCCcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHH
Q 045386 187 VSEFERGREELFDLLIEG-----------PSGLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKI 255 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 255 (706)
+.|.++.+++|.+.+.-. -...+-|-++|++|.|||.+|+.+.+ +....| +.++ ..
T Consensus 479 iggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~----~~-- 545 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIK----GP-- 545 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECC----HH--
T ss_pred hCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEec----cc--
Confidence 778888888877665421 02345578999999999999999999 444333 3332 11
Q ss_pred HHHHHHhcCCCCCCccccCCCHHHHHHHHHHHhcCCceEEEEccCCC
Q 045386 256 LDDIINSLMPPSRARVIIGEDYHLKKSILRDYLTNKKYFIVRDDVFN 302 (706)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 302 (706)
+++....+. +...+.+.+...-+...+.|++|++..
T Consensus 546 --~l~s~~vGe---------se~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 546 --ELLTMWFGE---------SEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp --HHHTTTCSS---------CHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred --hhhccccch---------HHHHHHHHHHHHHHcCCceeechhhhH
Confidence 222222111 344444444444456789999999864
No 476
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.96 E-value=0.2 Score=51.15 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchhhHHHHHHHc
Q 045386 209 SVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 477
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.82 E-value=1.8 Score=47.17 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=36.4
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSL 263 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l 263 (706)
.-.++.|.|.+|+||||||.++..+...... ..++|++. .-...++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~--E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAML--EESVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEec--cCCHHHHHHHHHHHH
Confidence 3568899999999999999888774222211 24666654 445667777766544
No 478
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.79 E-value=0.35 Score=49.99 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+++-+.-.-..-.+++|+|.+|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444433323578999999999999999999974
No 479
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.77 E-value=0.21 Score=45.02 Aligned_cols=24 Identities=4% Similarity=0.126 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.--|.|+|.+|+|||||++.+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999999875
No 480
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.74 E-value=0.24 Score=50.16 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.++|+|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999887
No 481
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.69 E-value=0.22 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
.--|.|+|.+|+|||||++.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999999875
No 482
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.66 E-value=0.22 Score=46.27 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
-.|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998753
No 483
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.62 E-value=0.35 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
..++|.|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988874
No 484
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.59 E-value=0.56 Score=59.03 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=0.0
Q ss_pred EEEEEEcCCCchhhHHHHHHHcCCCccccCCcceEEEecCCCCHHHHHHHHHHhcCCCCCCccccCC-CHHHHHHHHHHH
Q 045386 209 SVIAILDSNGFDKTVFAADIYNNNHVKFYFDCLAWVRVSIGYYFGKILDDIINSLMPPSRARVIIGE-DYHLKKSILRDY 287 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~il~~l~~~~~~~~~~~~-~~~~~~~~l~~~ 287 (706)
++|-|+|.+|+||||||.++.. +....=..++|+++...++... ++.++.+...-.-... ..++....++..
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHH
Q ss_pred hcC-CceEEEEccC
Q 045386 288 LTN-KKYFIVRDDV 300 (706)
Q Consensus 288 L~~-kr~LlVlDdv 300 (706)
.+. +--+||+|.+
T Consensus 1501 vr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHTCCSEEEESCG
T ss_pred HhcCCCCEEEEcCh
No 485
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.58 E-value=0.21 Score=53.82 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=56.6
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHH-HHHHHcCCCcc------ccCCc-ceEEEecCCCC-HHHHHHHHHHhcCCCC
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVF-AADIYNNNHVK------FYFDC-LAWVRVSIGYY-FGKILDDIINSLMPPS 267 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtL-a~~v~~~~~~~------~~F~~-~~wv~vs~~~~-~~~i~~~il~~l~~~~ 267 (706)
.++.|..=. +-.-++|+|..|+|||+| +..+.+ ... ++-+. ++++-+.+... +.++.+++.+.=....
T Consensus 152 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~--q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~ 228 (510)
T 2ck3_A 152 AVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIIN--QKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKY 228 (510)
T ss_dssp HHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHH--THHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGG
T ss_pred eeccccccc-cCCEEEEecCCCCCchHHHHHHHHH--HHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCccc
Confidence 455554321 234689999999999999 457777 333 23443 67777777653 5566666654211110
Q ss_pred CCcc--ccCCC--H----HHHHHHHHHHh--cCCceEEEEccCCC
Q 045386 268 RARV--IIGED--Y----HLKKSILRDYL--TNKKYFIVRDDVFN 302 (706)
Q Consensus 268 ~~~~--~~~~~--~----~~~~~~l~~~L--~~kr~LlVlDdvw~ 302 (706)
..-. ..++. . ......+.+++ ++|..||++||+..
T Consensus 229 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 229 TIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 0000 01111 1 11122333444 47999999999854
No 486
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.52 E-value=0.29 Score=44.27 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
.--|.|+|.+|+|||||.+.+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998753
No 487
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.46 E-value=0.23 Score=44.65 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
..-|.++|.+|+|||||.+.+....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468899999999999999998753
No 488
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.34 E-value=0.21 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999998875
No 489
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.31 E-value=0.24 Score=50.19 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchhhHHHHHHHc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
.++|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 490
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.24 E-value=0.22 Score=50.39 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=33.0
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcCCCccccCC-cceEEEecCCCCHHHHHHHHHHhc
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNNNHVKFYFD-CLAWVRVSIGYYFGKILDDIINSL 263 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~il~~l 263 (706)
-.+++|+|.+|+|||||++.+... ....-. .++|+... ....++.+.+....
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e--~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE--ESVEETAEDLIGLH 87 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc--CCHHHHHHHHHHHH
Confidence 469999999999999999998873 222112 34555432 24455555554443
No 491
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.24 E-value=0.37 Score=49.82 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
+.+-+.....+..+|+|+|.+|+|||||+..+..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4433333334578999999999999999999865
No 492
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.22 E-value=0.23 Score=51.62 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchhhHHHHHHHcC
Q 045386 208 LSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
-.+++|+|..|+|||||.+.+..-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 468999999999999999999863
No 493
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.21 E-value=0.29 Score=44.09 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchhhHHHHHHHcC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999875
No 494
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.13 E-value=0.23 Score=45.50 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchhhHHHHHHHcC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 495
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.05 E-value=0.3 Score=54.88 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=35.2
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 187 VSEFERGREELFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
++|.+..++.+...+..+ ..+.|+|.+|+||||||+.+..-
T Consensus 43 i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred EECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 999988888877777654 47899999999999999999983
No 496
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.02 E-value=0.27 Score=49.93 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=21.4
Q ss_pred CCcEEEEEEcCCCchhhHHHHHHHc
Q 045386 206 SGLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3578999999999999999987766
No 497
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.95 E-value=0.29 Score=45.50 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHcCC
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYNNN 232 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 232 (706)
....|.|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998753
No 498
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.95 E-value=0.25 Score=44.70 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchhhHHHHHHHcC
Q 045386 209 SVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
--|.|+|.+|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 499
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.90 E-value=0.35 Score=45.48 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=24.3
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCchhhHHHHHHHcC
Q 045386 197 LFDLLIEGPSGLSVIAILDSNGFDKTVFAADIYNN 231 (706)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (706)
+++.+.-.. +...|.++|.+|+|||||.+.+..+
T Consensus 15 ~l~~~~~~~-~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYK-KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTT-CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccC-CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 445443222 2345789999999999999998764
No 500
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.84 E-value=0.24 Score=52.87 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchhhHHHHHHHc
Q 045386 207 GLSVIAILDSNGFDKTVFAADIYN 230 (706)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (706)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999887
Done!