BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045387
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGKFS 71
L KGPWT EEDQK+++ ++K+G +W + K+ R GK CR RW N+L P++K+ ++
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72 LEEEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYWNTHIKKKL 116
EE+ I + HKVLGN+W+ IA LPGRTDN +KN+WN+ IK+K+
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGKFS 71
L KGPWT EEDQ++++++QK+G RW + K+ R GK CR RW N+L P++K+ ++
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72 LEEEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYWNTHIKKKL 116
EE+ I Q HK LGN+W+ IA LPGRTDN +KN+WN+ +++K+
Sbjct: 84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGKFS 71
L KGPWT EEDQ+++ +QK+G RW + K+ R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 LEEEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYWNTHIKKKL 116
EE+ I Q HK LGN+W+ IA LPGRTDN IKN+WN+ +++K+
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGKFS 71
L KGPWT EEDQ+++ +QK+G RW + K+ R GK CR RW N+L P++K+ ++
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72 LEEEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYWNTHIKKKL 116
EE+ I Q HK LGN+W+ IA LPGRTDN IKN+WN+ +++K+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 69 KFSLEEEEAIIQLHKVLG-NKWSAIASRLPGRTDNEIKNYWNTHIKKKLLR 118
+++ EE+E + +L + G + W IA+ LP RTD + ++ W + +L++
Sbjct: 8 RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIK 58
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 12 LKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGKFS 71
L KGPWT EEDQ+++ +QK+G RW + K+ R GK CR RW N+L P++K+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72 LEEEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYWNTHIKKKL 116
EE+ I Q HK LGN+W+ IA LPGRTDN IKN+WN+ +++K+
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Query: 14 KGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGL--KRCGKSCRLRWTNYLRPDIKRGKFS 71
KGP+T ED + +Y++++G W P+ R K CR RW N+L P + + ++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 LEEEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYWNTHIKKKL 116
EE+E I + + LG+KWS IA +PGRTDN IKN WN+ I K++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 11 GLKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGKF 70
KK +T EED+ L + +HG W+ + R + CR RW NYL P I +
Sbjct: 8 AAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISHTPW 65
Query: 71 SLEEEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYWNT 110
+ EE+ ++Q + G +W+ IA PGRTD IKN W T
Sbjct: 66 TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 39/52 (75%)
Query: 65 IKRGKFSLEEEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYWNTHIKKKL 116
+K+ ++ EE+ I Q HK LGN+W+ IA LPGRTDN IKN+WN+ +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 40/53 (75%)
Query: 64 DIKRGKFSLEEEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYWNTHIKKKL 116
++K+ ++ EE+ + Q HK LGN+W+ IA LPGRTDN IKN+WN+ +++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 14 KGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGKFSLE 73
K +T EED KL + ++G W + + + R + CR RW NY+ P ++ +S E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYW 108
E+ + Q + G KW+ I+ L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPD 64
L KGPWT EEDQ++++ +QK+G RW + K+ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 67 RGKFSLEEEEAIIQLHKVLG-NKWSAIASRLPGRTDNEIKNYWNTHI 112
+G ++ EE++ +I+L + G +WS IA L GR + + W+ H+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPD 64
L KGPWT EEDQ+L+ +QK+G RW + K+ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 67 RGKFSLEEEEAIIQLHKVLG-NKWSAIASRLPGRTDNEIKNYWNTHI 112
+G ++ EE++ +I+L + G +WS IA L GR + + W+ H+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPD 64
L KGPWT EEDQ+++ +QK+G RW + K+ R GK CR RW N+L P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 67 RGKFSLEEEEAIIQLHKVLG-NKWSAIASRLPGRTDNEIKNYWNTHI 112
+G ++ EE++ +I+L + G +WS IA L GR + + W+ H+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPD 64
L K WT EED+KL ++++G W+ + N R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNPE 52
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 65 IKRGKFSLEEEEAIIQLHKVLG-NKWSAIASRLPGRTDNEIKNYW 108
+ + +++ EE+E + +L + G + W IA+ LP RTD + ++ W
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 45
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 12 LKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYLRPD 64
L K WT EED+KL ++++G W+ + N R C+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNPE 52
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 65 IKRGKFSLEEEEAIIQLHKVLG-NKWSAIASRLPGRTDNEIKNYW 108
+ + +++ EE+E + +L + G + W IA+ LP RTD + ++ W
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 45
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 17 WTAEEDQKLVDYIQKHGHGRWRTLPKNAGL--KRCGKSCRLRWTNYLRPDIKRGKFS 71
W ED+ L + K+G +W + A L ++ K C+ RW +L P IK+ ++S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 69 KFSLEEEEAIIQLHKVLGNKWSAIASRLPGRTDNEIKNYWNTHIKKKLLRMGIDPVT 125
K+++EE+E Q G +W+ I+ + RT ++K+Y + K K ++ G+D T
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK-VKCGLDKET 66
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 30.8 bits (68), Expect = 0.69, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 7 SDKNGLKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKN 43
S N KK WT EE + + +QK+G G W + KN
Sbjct: 7 STTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKN 43
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 30.8 bits (68), Expect = 0.71, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 7 SDKNGLKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKN 43
S N KK WT EE + + +QK+G G W + KN
Sbjct: 4 STTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 30.8 bits (68), Expect = 0.78, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 7 SDKNGLKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKN 43
S N KK WT EE + + +QK+G G W + KN
Sbjct: 3 STTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKN 39
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 17 WTAEEDQKLVDYIQKHGHGRW 37
WT EED+KL+ + K+G+G W
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSW 191
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 17 WTAEEDQKLVDYIQKHGHGRW 37
WT EED+KL+ + K+G+G W
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSW 192
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 10 NGLKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKN 43
N KK WT EE + + +QK+G G W + KN
Sbjct: 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 13 KKGPWTAEEDQKLVDYIQKHGHGRWRTLPKN 43
KK WT EE + + +QK+G G W + KN
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 31
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 6 SSDKNGLKKGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCR 54
SS +G + W A+E+ L+D + G G W + G R + CR
Sbjct: 2 SSGSSGFDEN-WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR 49
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 69 KFSLEEEEAIIQLHKVLGNK-WSAIASRLPGRTDNEIKNYW 108
K++ EE+E + L + G + W +AS P RTD + + W
Sbjct: 10 KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 17 WTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYL 61
WT EED++L +++ G W+ L + R + C+ RW L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVL 54
>pdb|3REN|A Chain A, Cpf_2247, A Novel Alpha-Amylase From Clostridium
Perfringens
pdb|3REN|B Chain B, Cpf_2247, A Novel Alpha-Amylase From Clostridium
Perfringens
Length = 350
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 19 AEEDQKLVDYIQKHGHGRWRTL 40
AEE++ LVDYI +G G TL
Sbjct: 150 AEENETLVDYIDNYGKGNTTTL 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,338,709
Number of Sequences: 62578
Number of extensions: 228262
Number of successful extensions: 732
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 50
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)