BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045388
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 108 SVLSKNVLELW-----EKALSQELIDASQGIYCPFKDCSAKLVYE-NDGEDVLS----ES 157
S +S+ + LW E+ LS + +D S G+ PF D +VY G+ + S
Sbjct: 240 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 158 ECPYCHRL 165
E P+ H L
Sbjct: 300 EAPFLHYL 307
>pdb|1WIM|A Chain A, Solution Structure Of The Ring Finger Domain Of The Human
Ubcm4-Interacting Protein 4
Length = 94
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 57 DQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDC--KSVLKFDACKSVLSKNV 114
+QM I C FC+ C+ ++V I+ G+ T ++CP C + L+ + + +++ +
Sbjct: 18 EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEI 77
Query: 115 LELWEK 120
++ ++K
Sbjct: 78 MQRYKK 83
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 108 SVLSKNVLELW-----EKALSQELIDASQGIYCPFKDCSAKLVYE-NDGEDVLS----ES 157
S +S+ + LW E+ LS + +D S G+ PF D +VY G+ + S
Sbjct: 240 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 158 ECPYCHRL 165
E P+ H L
Sbjct: 300 EAPFLHYL 307
>pdb|2CT7|A Chain A, Solution Structure Of The Ibr Domain Of The Ring Finger
Protein 31 Protein
Length = 86
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 139 DCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPW---HPGR 178
CS +YE + E+ CP CH+ FC C W H GR
Sbjct: 30 QCSFGFIYERE----QLEATCPQCHQTFCVRCKRQWEEQHRGR 68
>pdb|1BQ7|A Chain A, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|B Chain B, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|C Chain C, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|D Chain D, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|E Chain E, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
pdb|1BQ7|F Chain F, Dsba Mutant P151a, Role Of The Cis-Proline In The Active
Site Of Dsba
Length = 189
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 165 LFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERTGGCL 209
FC HCY E L + + VKKK KYH+ GG L
Sbjct: 28 FFCPHCY----QFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDL 68
>pdb|3DKS|A Chain A, Dsba Substrate Complex
pdb|3DKS|B Chain B, Dsba Substrate Complex
pdb|3DKS|C Chain C, Dsba Substrate Complex
pdb|3DKS|D Chain D, Dsba Substrate Complex
Length = 189
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 165 LFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERTGGCL 209
FC HCY E L + + VKKK KYH+ GG L
Sbjct: 28 FFCPHCY----QFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDL 68
>pdb|1DSB|A Chain A, Crystal Structure Of The Dsba Protein Required For
Disulphide Bond Formation In Vivo
pdb|1DSB|B Chain B, Crystal Structure Of The Dsba Protein Required For
Disulphide Bond Formation In Vivo
pdb|1FVK|A Chain A, The 1.7 Angstrom Structure Of Wild Type Disulfide Bond
Formation Protein (Dsba)
pdb|1FVK|B Chain B, The 1.7 Angstrom Structure Of Wild Type Disulfide Bond
Formation Protein (Dsba)
pdb|1A2L|A Chain A, Reduced Dsba At 2.7 Angstroms Resolution
pdb|1A2L|B Chain B, Reduced Dsba At 2.7 Angstroms Resolution
pdb|1A2M|A Chain A, Oxidized Dsba At 2.7 Angstroms Resolution, Crystal Form
Iii
pdb|1A2M|B Chain B, Oxidized Dsba At 2.7 Angstroms Resolution, Crystal Form
Iii
pdb|1A23|A Chain A, Solution Nmr Structure Of Reduced Dsba From Escherichia
Coli, Minimized Average Structure
pdb|1A24|A Chain A, Solution Nmr Structure Of Reduced Dsba From Escherichia
Coli, Family Of 20 Structures
pdb|1A2J|A Chain A, Oxidized Dsba Crystal Form Ii
Length = 189
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 165 LFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERTGGCL 209
FC HCY E L + + VKKK KYH+ GG L
Sbjct: 28 FFCPHCY----QFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDL 68
>pdb|2B6M|A Chain A, Structure Of The Dsba Mutant (P31a-C33a)
pdb|2B6M|B Chain B, Structure Of The Dsba Mutant (P31a-C33a)
Length = 189
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 165 LFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERTGGCL 209
FCAH Y E L + + VKKK KYH+ GG L
Sbjct: 28 FFCAHAY----QFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDL 68
>pdb|1UN2|A Chain A, Crystal Structure Of Circularly Permuted Cpdsba_q100t99
Preserved Global Fold And Local Structural Adjustments
Length = 197
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 165 LFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERTGGCL 209
FC HCY E L + + VKKK KYH+ GG L
Sbjct: 123 FFCPHCY----QFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDL 163
>pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr-
Ring (Triad) Motif
Length = 60
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 191 QLRKCPNCKYHIERTGGCLHMTC 213
++CP C IE+ GGC HM C
Sbjct: 5 NTKECPKCHVTIEKDGGCNHMVC 27
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 70 CSDCINKHVATKIQGGIITPVTCPGP 95
S +NK V K+ GG+ T + C GP
Sbjct: 121 ISSVLNKLVVVKLNGGLGTSMGCKGP 146
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 64 SCIHSFCSDCINKHVATKIQ 83
+C HSFCS CIN+ + KI+
Sbjct: 81 NCAHSFCSYCINEWMKRKIE 100
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 64 SCIHSFCSDCINKHVATKIQ 83
+C HSFCS CIN+ + KI+
Sbjct: 70 NCAHSFCSYCINEWMKRKIE 89
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 64 SCIHSFCSDCINKHVATKIQ 83
+C HSFCS CIN+ + KI+
Sbjct: 70 NCAHSFCSYCINEWMKRKIE 89
>pdb|2JMO|A Chain A, Ibr Domain Of Human Parkin
Length = 80
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 110 LSKNVLELWEKALSQELIDASQGIYCPFKDCSAKLVYENDGEDVLSESECPY-CHRLFCA 168
+ + +++ ++E + G+ CP C A L+ E D V E C FC
Sbjct: 3 MGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCR 62
Query: 169 HCYVPWHPG 177
C +H G
Sbjct: 63 ECKEAYHEG 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,319,349
Number of Sequences: 62578
Number of extensions: 187145
Number of successful extensions: 499
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 27
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)