Query 045388
Match_columns 214
No_of_seqs 153 out of 1250
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 22:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.8 1.1E-19 3.8E-24 122.8 6.9 88 42-129 3-92 (94)
2 2jmo_A Parkin; IBR, E3 ligase, 99.3 4.1E-14 1.4E-18 92.0 -5.3 64 109-176 2-70 (80)
3 4ap4_A E3 ubiquitin ligase RNF 99.2 5.2E-12 1.8E-16 90.0 1.3 117 43-205 6-126 (133)
4 2ct7_A Ring finger protein 31; 99.1 1E-12 3.4E-17 86.7 -3.9 72 112-189 4-79 (86)
5 1wd2_A Ariadne-1 protein homol 99.1 2.9E-11 9.9E-16 73.7 2.2 26 189-214 3-28 (60)
6 2ct2_A Tripartite motif protei 98.9 7.4E-10 2.5E-14 73.1 4.1 64 39-109 10-74 (88)
7 2ecv_A Tripartite motif-contai 98.9 9.8E-10 3.3E-14 71.9 4.0 60 40-106 15-74 (85)
8 3hcs_A TNF receptor-associated 98.9 5.7E-10 2E-14 82.9 3.1 85 40-148 14-98 (170)
9 2ysl_A Tripartite motif-contai 98.9 2.7E-10 9.1E-15 72.6 1.0 56 39-104 15-70 (73)
10 2ysj_A Tripartite motif-contai 98.9 1.5E-09 5.2E-14 67.0 4.4 48 39-94 15-62 (63)
11 2ecy_A TNF receptor-associated 98.8 2.2E-09 7.6E-14 66.9 3.9 53 41-105 12-64 (66)
12 2ecw_A Tripartite motif-contai 98.8 1.9E-09 6.6E-14 70.5 3.7 59 41-106 16-74 (85)
13 2egp_A Tripartite motif-contai 98.8 4.6E-10 1.6E-14 72.6 0.1 60 41-106 9-68 (79)
14 2djb_A Polycomb group ring fin 98.8 4.3E-09 1.5E-13 66.8 3.8 55 40-106 11-65 (72)
15 1jm7_A BRCA1, breast cancer ty 98.8 3.9E-09 1.3E-13 72.8 3.6 71 44-124 21-92 (112)
16 3ng2_A RNF4, snurf, ring finge 98.8 1.6E-09 5.4E-14 68.5 1.5 57 41-107 7-67 (71)
17 2ecm_A Ring finger and CHY zin 98.8 5.6E-09 1.9E-13 62.5 3.9 51 42-102 3-54 (55)
18 1rmd_A RAG1; V(D)J recombinati 98.8 3.2E-09 1.1E-13 73.9 3.1 83 43-148 22-104 (116)
19 2kiz_A E3 ubiquitin-protein li 98.8 1.1E-08 3.8E-13 64.3 5.2 53 40-102 10-62 (69)
20 3hct_A TNF receptor-associated 98.8 1.4E-08 4.7E-13 70.8 6.1 86 40-149 14-99 (118)
21 2ect_A Ring finger protein 126 98.7 5.2E-09 1.8E-13 67.5 3.3 57 39-105 10-66 (78)
22 2ep4_A Ring finger protein 24; 98.7 1.2E-08 4.1E-13 65.0 4.8 52 41-102 12-63 (74)
23 1t1h_A Gspef-atpub14, armadill 98.7 6.3E-09 2.2E-13 67.0 3.3 66 42-119 6-72 (78)
24 2ea6_A Ring finger protein 4; 98.7 1.2E-08 4E-13 64.0 4.4 54 39-102 10-67 (69)
25 2d8t_A Dactylidin, ring finger 98.7 6.1E-09 2.1E-13 65.9 3.1 56 40-108 11-66 (71)
26 2xeu_A Ring finger protein 4; 98.7 2.6E-09 9E-14 66.0 1.1 56 43-108 2-61 (64)
27 3ztg_A E3 ubiquitin-protein li 98.7 6.9E-09 2.4E-13 69.0 2.9 50 41-101 10-60 (92)
28 3lrq_A E3 ubiquitin-protein li 98.7 1.5E-08 5.2E-13 68.5 4.1 55 43-108 21-75 (100)
29 2yur_A Retinoblastoma-binding 98.7 2E-08 7E-13 64.0 4.4 52 39-101 10-62 (74)
30 1g25_A CDK-activating kinase a 98.7 4.3E-09 1.5E-13 65.4 1.1 57 44-109 3-61 (65)
31 2csy_A Zinc finger protein 183 98.7 2.8E-08 9.5E-13 64.5 4.9 50 40-102 11-60 (81)
32 1x4j_A Ring finger protein 38; 98.7 1.3E-08 4.6E-13 65.0 3.3 52 41-102 20-71 (75)
33 2yu4_A E3 SUMO-protein ligase 98.7 1.7E-08 5.7E-13 67.5 3.8 59 42-105 5-65 (94)
34 1e4u_A Transcriptional repress 98.6 2.4E-08 8.3E-13 64.3 4.2 55 41-104 8-63 (78)
35 2ecj_A Tripartite motif-contai 98.6 3.2E-08 1.1E-12 59.8 4.0 47 40-94 11-57 (58)
36 2y43_A E3 ubiquitin-protein li 98.6 1.7E-08 5.7E-13 68.2 2.4 66 43-120 21-87 (99)
37 2l0b_A E3 ubiquitin-protein li 98.6 3.5E-08 1.2E-12 65.5 3.8 52 41-102 37-88 (91)
38 1iym_A EL5; ring-H2 finger, ub 98.6 1.7E-08 6E-13 60.3 2.1 49 43-101 4-53 (55)
39 3knv_A TNF receptor-associated 98.6 2.7E-09 9.3E-14 76.8 -1.9 91 42-148 29-120 (141)
40 3fl2_A E3 ubiquitin-protein li 98.5 3.3E-08 1.1E-12 69.5 2.1 49 43-103 51-99 (124)
41 1v87_A Deltex protein 2; ring- 98.5 1.1E-07 3.8E-12 65.7 4.4 54 44-102 25-93 (114)
42 1z6u_A NP95-like ring finger p 98.5 2E-08 6.7E-13 73.0 -0.0 50 43-104 77-126 (150)
43 3l11_A E3 ubiquitin-protein li 98.4 6.8E-08 2.3E-12 66.9 2.2 52 40-103 11-62 (115)
44 1chc_A Equine herpes virus-1 r 98.4 1.4E-07 4.7E-12 58.9 3.0 48 43-102 4-51 (68)
45 4ayc_A E3 ubiquitin-protein li 98.4 9.6E-08 3.3E-12 68.4 2.3 46 44-102 53-98 (138)
46 2kr4_A Ubiquitin conjugation f 98.4 3.4E-07 1.2E-11 59.9 4.5 51 42-105 12-62 (85)
47 1jm7_B BARD1, BRCA1-associated 98.4 3.7E-08 1.3E-12 68.5 -0.4 46 44-104 22-68 (117)
48 1bor_A Transcription factor PM 98.4 9.5E-08 3.3E-12 57.4 1.4 45 42-102 4-48 (56)
49 2ckl_A Polycomb group ring fin 98.3 1.8E-07 6.1E-12 64.0 2.3 49 43-103 14-62 (108)
50 1wgm_A Ubiquitin conjugation f 98.3 2.3E-07 7.7E-12 62.4 2.2 51 42-105 20-71 (98)
51 2ecn_A Ring finger protein 141 98.2 1E-07 3.5E-12 59.9 -0.6 48 41-102 12-59 (70)
52 2c2l_A CHIP, carboxy terminus 98.2 2.3E-06 7.8E-11 68.1 6.6 54 40-105 204-257 (281)
53 3htk_C E3 SUMO-protein ligase 98.2 5E-07 1.7E-11 70.6 2.3 57 42-106 179-235 (267)
54 2kre_A Ubiquitin conjugation f 98.2 5.5E-07 1.9E-11 60.7 2.0 50 42-104 27-76 (100)
55 2ecl_A Ring-box protein 2; RNF 98.2 9.9E-07 3.4E-11 57.1 3.1 52 42-103 13-76 (81)
56 2ckl_B Ubiquitin ligase protei 98.1 1.3E-06 4.3E-11 64.4 3.5 49 43-102 53-101 (165)
57 2d8s_A Cellular modulator of i 98.1 3.8E-06 1.3E-10 54.1 4.3 57 38-103 9-70 (80)
58 2f42_A STIP1 homology and U-bo 98.0 1.2E-05 4.2E-10 59.7 7.1 54 40-105 102-155 (179)
59 4ap4_A E3 ubiquitin ligase RNF 98.0 1.5E-06 5.1E-11 61.3 1.8 58 41-108 69-130 (133)
60 2vje_B MDM4 protein; proto-onc 98.0 4.6E-06 1.6E-10 51.2 2.9 51 41-102 4-55 (63)
61 4ic3_A E3 ubiquitin-protein li 98.0 1.6E-06 5.6E-11 55.0 0.9 42 44-102 24-66 (74)
62 2ecg_A Baculoviral IAP repeat- 97.9 4.4E-06 1.5E-10 53.1 2.6 42 44-102 25-67 (75)
63 2ea5_A Cell growth regulator w 97.9 1.1E-05 3.7E-10 50.3 3.7 50 36-102 7-57 (68)
64 3dpl_R Ring-box protein 1; ubi 97.8 9.2E-06 3.1E-10 55.2 3.1 49 44-102 37-100 (106)
65 2vje_A E3 ubiquitin-protein li 97.8 8.9E-06 3E-10 50.0 2.5 50 42-102 6-56 (64)
66 2y1n_A E3 ubiquitin-protein li 97.6 3.1E-05 1.1E-09 64.1 3.8 47 45-103 333-379 (389)
67 2yho_A E3 ubiquitin-protein li 97.6 1.2E-05 4.1E-10 51.6 0.3 43 44-103 18-61 (79)
68 4a0k_B E3 ubiquitin-protein li 97.5 1.9E-05 6.5E-10 54.5 0.3 49 45-103 49-112 (117)
69 2ct0_A Non-SMC element 1 homol 97.3 0.00023 8E-09 44.8 4.0 55 38-102 9-63 (74)
70 3k1l_B Fancl; UBC, ring, RWD, 97.1 0.00039 1.3E-08 56.3 4.1 60 42-103 306-373 (381)
71 1wd2_A Ariadne-1 protein homol 96.9 0.00061 2.1E-08 41.0 2.8 40 130-175 4-45 (60)
72 3t6p_A Baculoviral IAP repeat- 96.9 0.00016 5.6E-09 59.2 -0.0 42 44-102 295-337 (345)
73 2cs3_A Protein C14ORF4, MY039 96.4 0.009 3.1E-07 37.5 5.5 56 40-98 11-68 (93)
74 2jun_A Midline-1; B-BOX, TRIM, 96.4 0.0017 5.7E-08 43.3 2.4 34 44-77 3-36 (101)
75 2bay_A PRE-mRNA splicing facto 96.2 0.0017 5.8E-08 39.2 1.5 51 44-107 3-54 (61)
76 1vyx_A ORF K3, K3RING; zinc-bi 96.0 0.016 5.5E-07 34.7 5.1 49 43-102 5-58 (60)
77 3vk6_A E3 ubiquitin-protein li 95.9 0.0046 1.6E-07 40.8 2.5 32 46-79 3-34 (101)
78 1weo_A Cellulose synthase, cat 93.7 0.08 2.7E-06 33.9 3.8 61 132-210 16-76 (93)
79 3nw0_A Non-structural maintena 91.3 0.14 4.8E-06 39.5 3.3 52 43-104 179-230 (238)
80 2yur_A Retinoblastoma-binding 90.2 0.18 6.3E-06 31.0 2.5 33 160-204 32-64 (74)
81 3lrq_A E3 ubiquitin-protein li 88.7 0.21 7E-06 32.9 2.0 48 133-204 23-70 (100)
82 1z60_A TFIIH basal transcripti 87.8 0.14 4.7E-06 30.4 0.6 44 133-199 16-59 (59)
83 3qt1_I DNA-directed RNA polyme 86.4 0.53 1.8E-05 32.8 3.0 37 128-166 20-56 (133)
84 3vk6_A E3 ubiquitin-protein li 86.1 0.27 9.3E-06 32.3 1.3 32 161-205 19-50 (101)
85 3ztg_A E3 ubiquitin-protein li 86.0 0.34 1.2E-05 31.1 1.8 49 131-202 12-60 (92)
86 1x4j_A Ring finger protein 38; 85.3 0.48 1.6E-05 29.1 2.2 33 161-207 43-75 (75)
87 2d8v_A Zinc finger FYVE domain 85.0 0.44 1.5E-05 28.7 1.7 35 40-78 4-39 (67)
88 2ecv_A Tripartite motif-contai 84.4 0.47 1.6E-05 29.6 1.9 37 161-205 36-72 (85)
89 2hu9_A MERP, mercuric transpor 83.1 0.69 2.4E-05 32.1 2.4 46 90-147 2-50 (130)
90 1jm7_B BARD1, BRCA1-associated 82.9 0.5 1.7E-05 31.9 1.6 46 132-204 22-67 (117)
91 3j20_Y 30S ribosomal protein S 82.5 0.59 2E-05 26.6 1.6 29 131-165 18-46 (50)
92 4ic3_A E3 ubiquitin-protein li 82.1 0.36 1.2E-05 29.8 0.6 27 161-205 41-68 (74)
93 3l11_A E3 ubiquitin-protein li 81.5 0.43 1.5E-05 32.0 0.9 30 161-203 32-61 (115)
94 1v87_A Deltex protein 2; ring- 80.2 0.87 3E-05 30.4 2.1 35 160-206 59-96 (114)
95 3h0g_I DNA-directed RNA polyme 78.5 1.4 4.7E-05 29.7 2.6 34 132-167 4-37 (113)
96 2k5c_A Uncharacterized protein 78.4 1.5 5.2E-05 27.4 2.5 21 89-111 8-29 (95)
97 2lbm_A Transcriptional regulat 78.0 12 0.00041 26.2 7.4 51 41-99 60-116 (142)
98 4ayb_P DNA-directed RNA polyme 77.9 1.4 4.6E-05 24.6 1.9 29 134-166 5-33 (48)
99 1weo_A Cellulose synthase, cat 77.7 6.7 0.00023 25.0 5.4 51 43-102 15-69 (93)
100 1pft_A TFIIB, PFTFIIBN; N-term 76.2 1.6 5.4E-05 24.6 2.0 29 132-166 5-34 (50)
101 1joc_A EEA1, early endosomal a 76.0 4.4 0.00015 27.7 4.7 36 41-76 66-102 (125)
102 1zbd_B Rabphilin-3A; G protein 75.8 1.2 4.2E-05 31.0 1.8 32 42-73 53-86 (134)
103 1vq8_Z 50S ribosomal protein L 75.5 1.5 5.1E-05 27.8 2.0 37 130-172 25-61 (83)
104 1z60_A TFIIH basal transcripti 74.4 1.5 5.1E-05 25.9 1.6 29 45-73 16-44 (59)
105 2o35_A Hypothetical protein DU 73.7 1.9 6.4E-05 28.2 2.1 18 68-85 42-59 (105)
106 3fyb_A Protein of unknown func 72.7 1.8 6.3E-05 28.1 1.9 17 68-84 41-57 (104)
107 2k4x_A 30S ribosomal protein S 72.7 1.3 4.5E-05 25.7 1.1 29 132-166 18-46 (55)
108 3u5c_f 40S ribosomal protein S 70.1 1.8 6.3E-05 30.8 1.6 32 133-168 119-150 (152)
109 1twf_I B12.6, DNA-directed RNA 70.0 1.7 5.7E-05 29.7 1.3 35 131-167 3-37 (122)
110 2ffw_A Midline-1; B-BOX, ring 66.4 4.7 0.00016 25.0 2.8 36 43-78 29-65 (78)
111 2k2d_A Ring finger and CHY zin 66.0 2.5 8.5E-05 26.5 1.4 27 132-164 37-63 (79)
112 3na7_A HP0958; flagellar bioge 65.6 20 0.00069 27.5 6.9 20 105-124 168-187 (256)
113 1wem_A Death associated transc 65.0 6.4 0.00022 24.2 3.2 40 36-76 8-47 (76)
114 1z2q_A LM5-1; membrane protein 63.8 3.8 0.00013 25.9 2.0 36 41-76 18-54 (84)
115 2yw8_A RUN and FYVE domain-con 63.5 4.3 0.00015 25.4 2.2 35 130-172 17-51 (82)
116 2ko5_A Ring finger protein Z; 63.4 1.8 6.1E-05 28.0 0.4 48 43-104 27-74 (99)
117 3iz6_X 40S ribosomal protein S 60.5 6.5 0.00022 24.9 2.6 31 133-168 37-67 (86)
118 3t7l_A Zinc finger FYVE domain 60.3 6.5 0.00022 25.1 2.7 37 41-77 17-54 (90)
119 1x4u_A Zinc finger, FYVE domai 59.8 5.2 0.00018 25.2 2.1 33 132-172 14-46 (84)
120 1twf_L ABC10-alpha, DNA-direct 59.8 5.7 0.00019 24.2 2.2 8 139-146 33-40 (70)
121 2kdx_A HYPA, hydrogenase/ureas 59.7 9.2 0.00031 25.7 3.5 25 132-164 73-98 (119)
122 1wfk_A Zinc finger, FYVE domai 57.9 5.6 0.00019 25.3 2.0 35 42-76 7-42 (88)
123 3lqh_A Histone-lysine N-methyl 57.0 14 0.00049 27.0 4.4 73 45-120 3-82 (183)
124 1x4s_A Protein FON, zinc finge 56.3 12 0.00041 21.9 3.0 34 44-77 11-45 (59)
125 2zet_C Melanophilin; complex, 56.0 5.3 0.00018 28.4 1.8 32 43-74 67-100 (153)
126 2yww_A Aspartate carbamoyltran 55.4 4.4 0.00015 28.6 1.3 33 131-166 104-143 (149)
127 2akl_A PHNA-like protein PA012 54.5 4.1 0.00014 28.0 1.0 29 131-166 26-54 (138)
128 1joc_A EEA1, early endosomal a 54.3 4.9 0.00017 27.5 1.4 32 133-172 70-101 (125)
129 2c2l_A CHIP, carboxy terminus 53.6 8.5 0.00029 29.5 2.9 49 131-204 207-255 (281)
130 2jrp_A Putative cytoplasmic pr 53.5 8 0.00027 24.3 2.1 33 133-173 3-40 (81)
131 3h0g_L DNA-directed RNA polyme 53.2 7.9 0.00027 23.1 2.0 24 134-164 23-46 (63)
132 3zyq_A Hepatocyte growth facto 52.2 7.6 0.00026 29.4 2.3 34 44-77 164-198 (226)
133 1y02_A CARP2, FYVE-ring finger 52.0 5.8 0.0002 27.0 1.4 39 40-78 15-54 (120)
134 3ql9_A Transcriptional regulat 51.0 33 0.0011 23.5 5.1 34 42-78 55-88 (129)
135 3a43_A HYPD, hydrogenase nicke 49.5 19 0.00065 24.9 3.8 15 132-148 70-84 (139)
136 1vfy_A Phosphatidylinositol-3- 49.4 7.7 0.00026 23.6 1.6 31 134-172 13-43 (73)
137 1x4v_A Hypothetical protein LO 49.1 7 0.00024 23.3 1.3 32 133-173 13-44 (63)
138 1gh9_A 8.3 kDa protein (gene M 49.1 5.6 0.00019 24.3 0.9 26 133-166 5-30 (71)
139 3a1b_A DNA (cytosine-5)-methyl 48.3 11 0.00037 26.9 2.4 33 43-78 78-112 (159)
140 2be7_D Aspartate carbamoyltran 48.2 5.7 0.00019 28.2 0.9 34 131-166 104-144 (153)
141 3vhs_A ATPase wrnip1; zinc fin 47.8 3 0.0001 19.9 -0.4 22 88-111 5-26 (29)
142 3t6p_A Baculoviral IAP repeat- 47.6 5.7 0.0002 32.2 1.0 27 161-205 312-339 (345)
143 1qxf_A GR2, 30S ribosomal prot 46.7 14 0.00046 22.2 2.3 31 133-168 8-38 (66)
144 3nw0_A Non-structural maintena 45.7 24 0.0008 26.9 4.2 49 132-203 180-228 (238)
145 1pg5_B Aspartate carbamoyltran 45.5 8.7 0.0003 27.6 1.5 33 131-166 113-153 (168)
146 3mjh_B Early endosome antigen 44.7 5.3 0.00018 20.6 0.2 16 43-58 4-19 (34)
147 2y1n_A E3 ubiquitin-protein li 44.7 9.2 0.00032 31.5 1.8 32 161-205 349-380 (389)
148 2lri_C Autoimmune regulator; Z 44.5 20 0.00069 21.3 2.9 49 41-98 9-57 (66)
149 2k16_A Transcription initiatio 44.4 17 0.00057 22.1 2.6 36 41-76 15-50 (75)
150 1wew_A DNA-binding family prot 44.3 22 0.00075 21.8 3.2 38 37-75 9-48 (78)
151 2js4_A UPF0434 protein BB2007; 43.9 11 0.00039 22.8 1.7 31 131-167 7-37 (70)
152 1wfe_A Riken cDNA 2310008M20 p 43.4 14 0.00048 23.4 2.1 33 132-173 25-57 (86)
153 1dvp_A HRS, hepatocyte growth 42.3 10 0.00035 28.5 1.6 32 134-173 163-194 (220)
154 3j20_W 30S ribosomal protein S 42.2 18 0.00063 21.4 2.3 31 133-168 16-46 (63)
155 2pk7_A Uncharacterized protein 41.9 10 0.00034 23.0 1.2 30 132-167 8-37 (69)
156 2jr6_A UPF0434 protein NMA0874 41.3 17 0.00059 21.9 2.2 16 192-207 26-41 (68)
157 1f62_A Transcription factor WS 40.5 17 0.00058 20.1 2.0 45 46-94 2-46 (51)
158 2hf1_A Tetraacyldisaccharide-1 40.3 10 0.00035 22.9 1.1 29 133-167 9-37 (68)
159 4esj_A Type-2 restriction enzy 40.2 3.5 0.00012 31.5 -1.3 38 133-172 35-72 (257)
160 1fre_A Nuclear factor XNF7; zi 39.9 24 0.00082 18.4 2.5 24 154-177 12-36 (42)
161 2xzm_6 RPS27E; ribosome, trans 39.5 20 0.00067 22.4 2.3 30 134-168 34-63 (81)
162 2fiy_A Protein FDHE homolog; F 39.1 10 0.00035 30.3 1.2 12 192-203 253-264 (309)
163 2ri7_A Nucleosome-remodeling f 39.1 7.3 0.00025 28.0 0.3 77 41-123 5-82 (174)
164 3v43_A Histone acetyltransfera 39.0 32 0.0011 22.7 3.6 48 44-94 5-60 (112)
165 1zvf_A 3-hydroxyanthranilate 3 38.4 4.7 0.00016 29.3 -0.8 22 182-203 151-172 (176)
166 3u5c_b RP61, YS20, 40S ribosom 37.6 23 0.00077 22.2 2.3 31 133-168 35-65 (82)
167 3zyq_A Hepatocyte growth facto 37.1 13 0.00046 28.0 1.6 19 155-173 179-197 (226)
168 1dl6_A Transcription factor II 36.9 19 0.00065 20.9 1.9 28 133-166 12-40 (58)
169 1loi_A Cyclic 3',5'-AMP specif 36.5 10 0.00034 17.5 0.5 13 165-177 6-18 (26)
170 1wil_A KIAA1045 protein; ring 36.5 57 0.002 20.6 4.1 34 43-77 14-47 (89)
171 2pv0_B DNA (cytosine-5)-methyl 36.2 22 0.00076 29.2 2.8 33 43-78 92-126 (386)
172 1wep_A PHF8; structural genomi 35.5 14 0.00049 22.7 1.2 56 40-101 8-64 (79)
173 1yfu_A 3-hydroxyanthranilate-3 35.3 4.7 0.00016 29.3 -1.2 22 182-203 149-170 (174)
174 1we9_A PHD finger family prote 34.6 13 0.00045 21.7 0.9 34 42-75 4-38 (64)
175 6rxn_A Rubredoxin; electron tr 34.2 25 0.00085 19.4 1.9 30 133-164 5-38 (46)
176 2jny_A Uncharacterized BCR; st 33.9 18 0.00061 21.7 1.4 29 132-166 10-38 (67)
177 2zjr_Z 50S ribosomal protein L 33.9 27 0.00094 20.4 2.2 26 128-164 26-51 (60)
178 1wii_A Hypothetical UPF0222 pr 33.7 14 0.00048 23.4 1.0 35 130-166 21-57 (85)
179 1wys_A Riken cDNA 2310008M20 p 33.4 27 0.00091 21.5 2.2 32 133-173 15-46 (75)
180 3v2d_5 50S ribosomal protein L 33.4 25 0.00084 20.6 1.9 25 129-164 27-51 (60)
181 2jx1_A Myelin transcription fa 32.9 38 0.0013 17.0 2.3 16 133-148 2-17 (31)
182 2vpb_A Hpygo1, pygopus homolog 32.0 30 0.001 20.5 2.2 36 42-77 6-43 (65)
183 3kv5_D JMJC domain-containing 31.7 24 0.00082 30.0 2.4 35 40-75 33-68 (488)
184 3m7n_A Putative uncharacterize 31.2 25 0.00086 25.4 2.1 19 194-214 142-160 (179)
185 2i5o_A DNA polymerase ETA; zin 30.8 15 0.0005 19.5 0.6 13 191-203 8-20 (39)
186 1ef4_A Subunit N, DNA-directed 30.7 65 0.0022 18.5 3.4 13 88-102 2-14 (55)
187 2gmg_A Hypothetical protein PF 30.3 86 0.0029 20.6 4.4 25 134-165 69-93 (105)
188 1qf8_A Casein kinase II; casei 30.0 56 0.0019 23.8 3.8 11 132-142 106-116 (182)
189 1lko_A Rubrerythrin all-iron(I 29.8 37 0.0013 24.8 2.9 50 6-55 117-166 (191)
190 1lv3_A Hypothetical protein YA 29.5 10 0.00035 22.9 -0.2 14 190-203 7-20 (68)
191 2lv9_A Histone-lysine N-methyl 29.1 24 0.00084 22.7 1.6 49 42-98 26-74 (98)
192 2jne_A Hypothetical protein YF 28.9 27 0.00092 22.7 1.7 15 193-207 33-47 (101)
193 3mpx_A FYVE, rhogef and PH dom 27.7 13 0.00044 30.8 0.0 57 134-205 377-433 (434)
194 2yqq_A Zinc finger HIT domain- 27.1 94 0.0032 17.8 3.8 34 43-80 11-45 (56)
195 2yvr_A Transcription intermedi 25.9 11 0.00038 20.7 -0.5 24 154-177 16-39 (50)
196 1k82_A Formamidopyrimidine-DNA 25.9 28 0.00097 27.0 1.7 15 191-205 239-253 (268)
197 3u6p_A Formamidopyrimidine-DNA 25.8 29 0.00099 27.0 1.7 15 191-205 244-258 (273)
198 3o70_A PHD finger protein 13; 25.7 23 0.00079 21.2 0.9 38 37-75 12-49 (68)
199 2e72_A POGO transposable eleme 25.3 29 0.001 19.3 1.2 12 191-202 11-22 (49)
200 2ku3_A Bromodomain-containing 25.3 57 0.0019 19.6 2.7 36 41-76 13-50 (71)
201 3na7_A HP0958; flagellar bioge 24.7 64 0.0022 24.6 3.6 39 91-150 200-238 (256)
202 4dgl_A Casein kinase II subuni 24.6 78 0.0027 23.7 3.8 11 133-143 107-117 (215)
203 3ttc_A HYPF, transcriptional r 24.5 44 0.0015 29.6 2.8 60 40-101 13-99 (657)
204 1k3x_A Endonuclease VIII; hydr 24.2 32 0.0011 26.6 1.7 14 192-205 234-247 (262)
205 1yuz_A Nigerythrin; rubrythrin 23.7 1.9E+02 0.0063 21.2 5.8 45 6-55 138-182 (202)
206 1znf_A 31ST zinc finger from X 23.6 25 0.00086 15.2 0.7 9 158-166 3-11 (27)
207 2lvu_A Zinc finger and BTB dom 29.1 17 0.00059 15.8 0.0 11 158-168 4-14 (26)
208 2xzf_A Formamidopyrimidine-DNA 23.2 31 0.001 26.8 1.4 15 191-205 241-255 (271)
209 2kvh_A Zinc finger and BTB dom 23.0 22 0.00074 15.6 0.4 10 157-166 4-13 (27)
210 1ard_A Yeast transcription fac 22.9 25 0.00086 15.4 0.6 9 158-166 4-12 (29)
211 1wg2_A Zinc finger (AN1-like) 22.8 68 0.0023 19.0 2.5 32 39-72 10-41 (64)
212 2apo_B Ribosome biogenesis pro 22.8 17 0.00057 21.4 -0.1 36 91-128 20-55 (60)
213 1ee8_A MUTM (FPG) protein; bet 22.8 39 0.0013 26.2 1.9 15 191-205 234-248 (266)
214 2k5r_A Uncharacterized protein 22.6 1.3E+02 0.0044 19.4 4.1 14 88-103 7-20 (97)
215 2eqg_A Tumor necrosis factor, 21.5 39 0.0013 18.3 1.2 18 132-149 11-28 (49)
216 2jyd_A F5 domain of myelin tra 21.5 72 0.0024 17.5 2.3 17 132-148 9-25 (46)
217 2m0e_A Zinc finger and BTB dom 21.5 27 0.00093 15.2 0.6 10 158-167 4-13 (29)
218 2csz_A Synaptotagmin-like prot 21.4 48 0.0017 20.4 1.8 37 130-173 23-59 (76)
219 1l1o_C Replication protein A 7 20.9 33 0.0011 24.8 1.1 27 134-165 45-71 (181)
220 2kvf_A Zinc finger and BTB dom 20.8 31 0.001 15.1 0.7 10 157-166 4-13 (28)
221 3flo_B DNA polymerase alpha ca 20.8 69 0.0024 23.8 2.9 21 88-110 48-68 (206)
222 1rik_A E6APC1 peptide; E6-bind 20.7 26 0.00088 15.4 0.4 9 158-166 4-12 (29)
223 2yre_A F-box only protein 30; 20.6 5.4 0.00018 26.1 -2.8 42 66-108 13-55 (100)
224 2kfq_A FP1; protein, de novo p 20.5 35 0.0012 15.8 0.9 14 157-170 3-16 (32)
225 3cc2_Z 50S ribosomal protein L 20.5 54 0.0018 22.0 2.0 33 130-168 58-90 (116)
226 3py7_A Maltose-binding peripla 20.5 57 0.002 27.5 2.7 62 42-105 398-487 (523)
227 3pwf_A Rubrerythrin; non heme 20.5 2.3E+02 0.008 20.0 6.0 47 7-55 103-149 (170)
228 1paa_A Yeast transcription fac 20.4 30 0.001 15.3 0.6 9 158-166 4-12 (30)
229 2did_A Tripartite motif protei 20.4 26 0.00089 19.4 0.4 24 154-177 17-41 (53)
230 3vth_A Hydrogenase maturation 20.2 66 0.0022 29.0 3.1 58 42-101 109-193 (761)
231 4g9i_A Hydrogenase maturation 20.2 62 0.0021 29.2 3.0 59 41-101 103-188 (772)
232 4fyy_B Aspartate carbamoyltran 20.1 48 0.0016 23.4 1.7 33 131-166 105-145 (153)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.79 E-value=1.1e-19 Score=122.84 Aligned_cols=88 Identities=22% Similarity=0.503 Sum_probs=78.4
Q ss_pred cccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCc--CcHHHHhhcCCHHHHHHHH
Q 045388 42 PSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSV--LKFDACKSVLSKNVLELWE 119 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~--l~~~~~~~~l~~~~~~~~~ 119 (214)
.+.++|+||+++++.+.++.+..|+|.||++||+.|+..++.+|.+.+++||..+|... +..+.++.+|+++++++|+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 45789999999998887766668999999999999999999888756899999999999 9999999999999999999
Q ss_pred HHHHHHHhcC
Q 045388 120 KALSQELIDA 129 (214)
Q Consensus 120 ~~~~~~~~~~ 129 (214)
+++.+.++..
T Consensus 83 ~~~~~~~v~~ 92 (94)
T 1wim_A 83 KLQFERSGPS 92 (94)
T ss_dssp HHHHHSSCSS
T ss_pred HHHHHhhhcc
Confidence 9888876654
No 2
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.25 E-value=4.1e-14 Score=91.99 Aligned_cols=64 Identities=23% Similarity=0.510 Sum_probs=56.3
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCCCcccCccCCCceeeecCCCCCCcCcccCC-----CCChhhccccCCCCCC
Q 045388 109 VLSKNVLELWEKALSQELIDASQGIYCPFKDCSAKLVYENDGEDVLSESECP-----YCHRLFCAHCYVPWHP 176 (214)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~h~ 176 (214)
+|+++++++|++++.++++..++.+|||.|+|++++..+.. ...+.|+ .|+..||+.|+.+||.
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~~----~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPD----QRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCSC----TTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECCC----CCcCCCCCCCCCCCCCeeccccCccccC
Confidence 57788899999999998888777999999999999987753 2668898 9999999999999997
No 3
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.16 E-value=5.2e-12 Score=90.02 Aligned_cols=117 Identities=23% Similarity=0.561 Sum_probs=79.7
Q ss_pred ccccccccccccccc----cccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhhcCCHHHHHHH
Q 045388 43 SRSSCEICRERREND----QMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKSVLSKNVLELW 118 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~~l~~~~~~~~ 118 (214)
+..+|+||++.+..+ .....+.|||.||.+||..|+.. ...||. |...+....+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~l~-------- 67 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPIY-------- 67 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--------CSBCTT--TCCBCTTTCEEECB--------
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--------CCCCCC--CCCcCccccccccc--------
Confidence 468999999998654 22236799999999999999852 248999 98888665544331
Q ss_pred HHHHHHHHhcCCCCcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCC
Q 045388 119 EKALSQELIDASQGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNC 198 (214)
Q Consensus 119 ~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C 198 (214)
...+...|+ -|...+...... ........||..||..|...| .+. .+.||.|
T Consensus 68 ---------i~~~~~~C~--iC~~~~~~~~~~---~~~~~~~~CgH~fc~~Ci~~~------------~~~--~~~CP~C 119 (133)
T 4ap4_A 68 ---------IGSGTVSCP--ICMDGYSEIVQN---GRLIVSTECGHVFCSQCLRDS------------LKN--ANTCPTC 119 (133)
T ss_dssp ---------CSSSSCBCT--TTCCBHHHHHHT---TCCEEEETTSBEEEHHHHHHH------------HHH--CSBCTTT
T ss_pred ---------cCCCCCCCC--CCCCcccccccc---CcceEeCCCCChhhHHHHHHH------------HHc--CCCCCCC
Confidence 124556788 787665432111 012223468999999996543 332 3699999
Q ss_pred Cccceec
Q 045388 199 KYHIERT 205 (214)
Q Consensus 199 ~~~iek~ 205 (214)
+..|.++
T Consensus 120 r~~~~~~ 126 (133)
T 4ap4_A 120 RKKINHK 126 (133)
T ss_dssp CCBCCGG
T ss_pred CCcCChh
Confidence 9998765
No 4
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.11 E-value=1e-12 Score=86.72 Aligned_cols=72 Identities=28% Similarity=0.676 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCCC---CCChHHHHHHHHH
Q 045388 112 KNVLELWEKALSQELIDA-SQGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPW---HPGREELMMRELV 187 (214)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---h~~~~~~~~~~~~ 187 (214)
++++++|++++.++++.. ++.+||| +|+++++.+.. ...+.|+.|+..||+.|+.+| |.+.....++.|.
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~----~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~ 77 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE----QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWK 77 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS----CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC----CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHH
Confidence 455677888888887765 4566999 99999887654 366899999999999999999 9998888888877
Q ss_pred Hh
Q 045388 188 KK 189 (214)
Q Consensus 188 ~~ 189 (214)
+.
T Consensus 78 ~~ 79 (86)
T 2ct7_A 78 RM 79 (86)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 5
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=2.9e-11 Score=73.72 Aligned_cols=26 Identities=42% Similarity=1.085 Sum_probs=23.9
Q ss_pred hCCCccCCCCCccceecCCCCCeecC
Q 045388 189 KKQLRKCPNCKYHIERTGGCLHMTCL 214 (214)
Q Consensus 189 ~~~~k~CP~C~~~iek~~GCnhm~C~ 214 (214)
..++|+||+|+++|||++|||||+|+
T Consensus 3 ~~~~k~CP~C~~~Iek~~GCnhmtC~ 28 (60)
T 1wd2_A 3 AANTKECPKCHVTIEKDGGCNHMVCR 28 (60)
T ss_dssp CCCCCCCTTTCCCCSSCCSCCSSSCC
T ss_pred cccceECcCCCCeeEeCCCCCcEEEC
Confidence 35789999999999999999999995
No 6
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=7.4e-10 Score=73.11 Aligned_cols=64 Identities=27% Similarity=0.609 Sum_probs=47.7
Q ss_pred CCCcccccccccccccccccc-cccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhhc
Q 045388 39 SSPPSRSSCEICRERRENDQM-FKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKSV 109 (214)
Q Consensus 39 ~~~~~~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~~ 109 (214)
....+..+|+||++.+...+. ...+.|+|.||..|+..|+... . ..+.||. |...+...++..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~-~~~~CP~--Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----I-NGVRCPF--CSKITRITSLTQL 74 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----S-SCBCCTT--TCCCBCCSSTTTS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----C-CCcCCCC--CCCcccchhHHHH
Confidence 344557899999999876432 3357999999999999999754 1 3579999 8887766655443
No 7
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=9.8e-10 Score=71.93 Aligned_cols=60 Identities=22% Similarity=0.478 Sum_probs=47.2
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHH
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDAC 106 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~ 106 (214)
...+..+|+||++.+..+. .+.|+|.||..|+..|+......+. .+.||. |...+..+++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~--~~~CP~--Cr~~~~~~~~ 74 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPL---SLDCGHSFCQACLTANHKKSMLDKG--ESSCPV--CRISYQPENI 74 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCB---CCSSSCCBCTTHHHHHHHHHHHTTS--CCCCTT--TCCSSCSSSC
T ss_pred HccCCCCCCCCCcccCCce---eCCCCCHHHHHHHHHHHHHhhcCCC--CCcCCC--CCCccCHHhc
Confidence 3445789999999987653 4689999999999999988765544 689999 8887765443
No 8
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.90 E-value=5.7e-10 Score=82.94 Aligned_cols=85 Identities=25% Similarity=0.423 Sum_probs=59.4
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhhcCCHHHHHHHH
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKSVLSKNVLELWE 119 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~~l~~~~~~~~~ 119 (214)
...+.+.|+||++.+..+. .+.|||.||..||..|+... ..+||. |...+..+++. ....++
T Consensus 14 ~~~~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~---~~~~~~--- 75 (170)
T 3hcs_A 14 PLESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQLF---PDNFAK--- 75 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGGCE---ECHHHH---
T ss_pred CCCCCCCCCCCChhhcCcE---ECCCCCHHHHHHHHHHHHhC-------CCCCCC--CccCcchhhhh---hhHHHH---
Confidence 3456789999999987653 36899999999999998643 238999 88888665422 211111
Q ss_pred HHHHHHHhcCCCCcccCccCCCceeeecC
Q 045388 120 KALSQELIDASQGIYCPFKDCSAKLVYEN 148 (214)
Q Consensus 120 ~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 148 (214)
+.+. .-.++||+.+|...+....
T Consensus 76 -----~~i~-~l~v~C~n~GC~~~~~~~~ 98 (170)
T 3hcs_A 76 -----REIL-SLMVKCPNEGCLHKMELRH 98 (170)
T ss_dssp -----HHHH-TSEEECCSTTCCCEEEGGG
T ss_pred -----HHHh-hcccCCCCCCCCceecHhH
Confidence 1111 3457899999998887665
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.7e-10 Score=72.61 Aligned_cols=56 Identities=25% Similarity=0.533 Sum_probs=42.5
Q ss_pred CCCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHH
Q 045388 39 SSPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFD 104 (214)
Q Consensus 39 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 104 (214)
....+..+|+||++.+..+. .+.|+|.||..|+..|+.. .. ....||. |...+..+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~----~~-~~~~CP~--Cr~~~~~~ 70 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGET----SC-GFFKCPL--CKTSVRKN 70 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEE---ECTTCCEEEHHHHHHHCSS----SC-SCCCCSS--SCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeE---EcCCCChhhHHHHHHHHHc----CC-CCCCCCC--CCCcCCcc
Confidence 33456789999999887543 4599999999999999751 12 3679999 88877544
No 10
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.5e-09 Score=67.04 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=37.2
Q ss_pred CCCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCC
Q 045388 39 SSPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPG 94 (214)
Q Consensus 39 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 94 (214)
....+..+|+||++.+..+. .+.|+|.||..||..|+.. .+ ...+||.
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~---~~--~~~~CP~ 62 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGET---SC--GFFKCPL 62 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCE---ECTTSSEECHHHHHHHHHH---CS--SCCCCSC
T ss_pred HhCccCCCCCcCCchhCCeE---EeCCCCcchHHHHHHHHHc---CC--CCCcCcC
Confidence 34456789999999987653 4699999999999999974 12 2568987
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2.2e-09 Score=66.95 Aligned_cols=53 Identities=21% Similarity=0.550 Sum_probs=41.8
Q ss_pred CcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHH
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDA 105 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 105 (214)
..+..+|+||++.+..+. .+.|||.||..|+..|+. . ....||. |+..+..++
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~----~---~~~~CP~--Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLS----S---SSPKCTA--CQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHT----T---SSCCCTT--TCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHH----h---CcCCCCC--CCcCCChhh
Confidence 345789999999987654 369999999999999985 1 2468999 888776543
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.84 E-value=1.9e-09 Score=70.49 Aligned_cols=59 Identities=25% Similarity=0.542 Sum_probs=45.7
Q ss_pred CcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHH
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDAC 106 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~ 106 (214)
..+..+|+||++.+..+. .+.|+|.||..|+..|+......+ ....||. |...+..+++
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~~~ 74 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRNTD--GKGNCPV--CRVPYPFGNL 74 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE---ECTTSCCBCHHHHHHHHHHSBCTT--SCBCCTT--TCCCCCTTCC
T ss_pred CccCCCCcCCChhhCcce---eCCCCCHHHHHHHHHHHHhccCCC--CCCCCCC--CCCcCCHHhC
Confidence 345789999999987654 468999999999999998755323 3689999 8888766543
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.81 E-value=4.6e-10 Score=72.61 Aligned_cols=60 Identities=23% Similarity=0.453 Sum_probs=45.4
Q ss_pred CcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHH
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDAC 106 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~ 106 (214)
..+..+|+||++.+..+. .+.|||.||..|+..|+........ ....||. |...+...++
T Consensus 9 ~~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~~~~~~~~~~-~~~~CP~--Cr~~~~~~~l 68 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPL---SLDCGHSLCRACITVSNKEAVTSMG-GKSSCPV--CGISYSFEHL 68 (79)
T ss_dssp CCCCCEETTTTEECSSCC---CCSSSCCCCHHHHSCCCCCCSSSCC-CCCCCSS--SCCCCCSSGG
T ss_pred cccCCCCcCCCcccCCee---ECCCCCHHHHHHHHHHHHhcccCCC-CCCcCCC--CCCcCCHhhC
Confidence 345789999999987654 4689999999999999865433323 4689999 8887765544
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=4.3e-09 Score=66.82 Aligned_cols=55 Identities=27% Similarity=0.646 Sum_probs=42.5
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHH
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDAC 106 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~ 106 (214)
...+..+|+||++.+..+. ....|+|.||..|+..|+.. ...||. |...+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~ 65 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDAT--TITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQTQP 65 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCE--ECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSSCS
T ss_pred hcCCCCCCCCCChHHHCcC--EECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcccc
Confidence 3456789999999887643 23599999999999999964 357999 8887765543
No 15
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=3.9e-09 Score=72.83 Aligned_cols=71 Identities=25% Similarity=0.439 Sum_probs=51.2
Q ss_pred cccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhh-cCCHHHHHHHHHHH
Q 045388 44 RSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKS-VLSKNVLELWEKAL 122 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~-~l~~~~~~~~~~~~ 122 (214)
...|+||++.+..+. .+.|||.||..|+..|+... . ..+.||. |...+...++.. ....++.+.+.+.+
T Consensus 21 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~----~-~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 21 ILECPICLELIKEPV---STKCDHIFCKFCMLKLLNQK----K-GPSQCPL--CKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp HTSCSSSCCCCSSCC---BCTTSCCCCSHHHHHHHHSS----S-SSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCCcccChhhcCeE---ECCCCCHHHHHHHHHHHHhC----C-CCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 478999999886653 46899999999999998743 2 3478999 988887766543 33355566665554
Q ss_pred HH
Q 045388 123 SQ 124 (214)
Q Consensus 123 ~~ 124 (214)
..
T Consensus 91 ~~ 92 (112)
T 1jm7_A 91 CA 92 (112)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 16
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.77 E-value=1.6e-09 Score=68.53 Aligned_cols=57 Identities=26% Similarity=0.688 Sum_probs=43.5
Q ss_pred Ccccccccccccccccc----cccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHh
Q 045388 41 PPSRSSCEICRERREND----QMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACK 107 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~ 107 (214)
..+..+|+||++.+..+ .....+.|+|.||..|+..|+... ..||. |...+...++.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~ 67 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYH 67 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCSCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhhee
Confidence 34568999999998654 223368999999999999998632 48999 88887655544
No 17
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.77 E-value=5.6e-09 Score=62.52 Aligned_cols=51 Identities=22% Similarity=0.483 Sum_probs=39.4
Q ss_pred cccccccccccccccc-cccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 42 PSRSSCEICRERREND-QMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~-~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
....+|+||++.+... ..+..+.|+|.||..|+..|+... .+||. |...+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 3467899999998542 234468999999999999998753 57999 877653
No 18
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.77 E-value=3.2e-09 Score=73.88 Aligned_cols=83 Identities=29% Similarity=0.538 Sum_probs=57.9
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhhcCCHHHHHHHHHHH
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKSVLSKNVLELWEKAL 122 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~~l~~~~~~~~~~~~ 122 (214)
+.+.|+||++.+..+. .+.|||.||..|+..|+... ...||. |...+...++... ...+. +.+
T Consensus 22 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~-~~~l~----~~i 84 (116)
T 1rmd_A 22 KSISCQICEHILADPV---ETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESP-VKSFL----NIL 84 (116)
T ss_dssp HHTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCC-CHHHH----HHH
T ss_pred CCCCCCCCCcHhcCcE---EcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhcccc-HHHHH----HHH
Confidence 4688999999987653 36999999999999998752 347999 9988877654432 11111 111
Q ss_pred HHHHhcCCCCcccCccCCCceeeecC
Q 045388 123 SQELIDASQGIYCPFKDCSAKLVYEN 148 (214)
Q Consensus 123 ~~~~~~~~~~~~Cp~~~C~~~~~~~~ 148 (214)
..-.++||+.+|+..+...+
T Consensus 85 ------~~l~v~C~~~gC~~~~~~~~ 104 (116)
T 1rmd_A 85 ------NSLMVKCPAQDCNEEVSLEK 104 (116)
T ss_dssp ------HHCEEECCSTTCCCEEEHHH
T ss_pred ------HHhcCCCCCCCCcchhhHhH
Confidence 12456899889998776543
No 19
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.76 E-value=1.1e-08 Score=64.27 Aligned_cols=53 Identities=23% Similarity=0.574 Sum_probs=40.9
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
......+|+||++.+.....+..+.|+|.||..|+..|+.. ..+||. |...+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT--------NKKCPI--CRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH--------CSBCTT--TCSBSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc--------CCCCcC--cCcccc
Confidence 34456889999999865544556899999999999999864 135999 876654
No 20
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.76 E-value=1.4e-08 Score=70.84 Aligned_cols=86 Identities=24% Similarity=0.423 Sum_probs=60.0
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhhcCCHHHHHHHH
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKSVLSKNVLELWE 119 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~~l~~~~~~~~~ 119 (214)
...+.+.|+||++.+..+. .+.|||.||..|+..|+... ...||. |...+...++ .....++
T Consensus 14 ~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~---~~~~~l~--- 75 (118)
T 3hct_A 14 PLESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQL---FPDNFAK--- 75 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGGC---EECHHHH---
T ss_pred CCCCCCCCCcCChhhcCeE---ECCcCChhhHHHHHHHHhhC-------CCCCCC--CCCCcCHHhc---ccCHHHH---
Confidence 3455789999999887653 46899999999999998753 238999 8888866432 2221111
Q ss_pred HHHHHHHhcCCCCcccCccCCCceeeecCC
Q 045388 120 KALSQELIDASQGIYCPFKDCSAKLVYEND 149 (214)
Q Consensus 120 ~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 149 (214)
+.+. .-.++||+.+|...+...+.
T Consensus 76 -----~~i~-~l~v~C~n~gC~~~~~~~~l 99 (118)
T 3hct_A 76 -----REIL-SLMVKCPNEGCLHKMELRHL 99 (118)
T ss_dssp -----HHHH-TSEEECSSTTCCCEEEGGGS
T ss_pred -----HHHc-cceeECCCCCCCCEEeeHHH
Confidence 1122 34578999999988877654
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.74 E-value=5.2e-09 Score=67.46 Aligned_cols=57 Identities=23% Similarity=0.473 Sum_probs=44.0
Q ss_pred CCCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHH
Q 045388 39 SSPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDA 105 (214)
Q Consensus 39 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 105 (214)
.......+|+||++.+.....+..+.|+|.||..|+..|+.. ...||. |...+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~ 66 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--------HDSCPV--CRKSLTGQN 66 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--------TCSCTT--TCCCCCCSC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--------CCcCcC--cCCccCCcc
Confidence 334557899999999877655556799999999999999842 247999 887776543
No 22
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.2e-08 Score=65.03 Aligned_cols=52 Identities=23% Similarity=0.522 Sum_probs=41.0
Q ss_pred CcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
.....+|+||++.+.....+..+.|+|.||..|+..|+... ..||. |...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 34467899999998876655556899999999999998642 37999 876653
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.72 E-value=6.3e-09 Score=67.04 Aligned_cols=66 Identities=24% Similarity=0.408 Sum_probs=48.1
Q ss_pred cccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHh-hcCCHHHHHHHH
Q 045388 42 PSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACK-SVLSKNVLELWE 119 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~-~~l~~~~~~~~~ 119 (214)
.+.+.|+||++.+..+. .+.|||.||+.|+..|+.. + ..+||. |+..+...++. +....+.++.|.
T Consensus 6 ~~~~~C~IC~~~~~~Pv---~~~CgH~fc~~Ci~~~~~~----~---~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV---IVSTGQTYERSSIQKWLDA----G---HKTCPK--SQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSSCTTTSCCCSSEE---EETTTEEEEHHHHHHHHTT----T---CCBCTT--TCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cccCCCCCccccccCCE---EcCCCCeecHHHHHHHHHH----C---cCCCCC--CcCCCChhhCccCHHHHHHHHHHH
Confidence 45789999999887653 3689999999999999852 1 468999 88887655432 344455555554
No 24
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.2e-08 Score=64.00 Aligned_cols=54 Identities=28% Similarity=0.717 Sum_probs=41.1
Q ss_pred CCCcccccccccccccccc----cccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 39 SSPPSRSSCEICRERREND----QMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 39 ~~~~~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
.......+|+||++.+..+ ..+..+.|+|.||..|+..|+.. ...||. |...+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 3445678999999998754 22236899999999999999874 247999 877664
No 25
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=6.1e-09 Score=65.90 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=43.7
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhh
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKS 108 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~ 108 (214)
......+|+||++.+.... .+.|+|.||..|+..|+.. ...||. |...+..+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPV---SLPCKHVFCYLCVKGASWL--------GKRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEE---EETTTEEEEHHHHHHCTTC--------SSBCSS--SCCBCCHHHHSC
T ss_pred cCCCCCCCccCCcccCCCE---EccCCCHHHHHHHHHHHHC--------CCcCcC--cCchhCHhhccC
Confidence 3455789999999886543 4689999999999999742 258999 999888776643
No 26
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.71 E-value=2.6e-09 Score=65.99 Aligned_cols=56 Identities=25% Similarity=0.655 Sum_probs=42.7
Q ss_pred ccccccccccccccc----cccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhh
Q 045388 43 SRSSCEICRERREND----QMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKS 108 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~ 108 (214)
+..+|+||++.+..+ +.+..+.|+|.||.+|+..|+.. ...||. |...+..+++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccceee
Confidence 357899999998654 22236799999999999999874 248999 888887655443
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.70 E-value=6.9e-09 Score=69.04 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=39.4
Q ss_pred CcccccccccccccccccccccCC-CCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcC
Q 045388 41 PPSRSSCEICRERRENDQMFKIES-CIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVL 101 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l 101 (214)
..+.++|+||++.+..+. .+. |||.||..||..|+... ....||. |...+
T Consensus 10 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHC------TTCCCTT--TCCSS
T ss_pred CCcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhc------CCCcCcC--CCCcC
Confidence 345789999999887653 456 99999999999998632 1368999 88775
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.67 E-value=1.5e-08 Score=68.51 Aligned_cols=55 Identities=22% Similarity=0.570 Sum_probs=43.5
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhh
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKS 108 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~ 108 (214)
+.++|+||++.+..+. ..+.|||.||..||..|+... ...||. |...+..+++..
T Consensus 21 ~~~~C~IC~~~~~~p~--~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 21 EVFRCFICMEKLRDAR--LCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRELVN 75 (100)
T ss_dssp HHTBCTTTCSBCSSEE--ECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCEE
T ss_pred CCCCCccCCccccCcc--ccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHHhHh
Confidence 4688999999987543 237999999999999998753 258999 998887766543
No 29
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.67 E-value=2e-08 Score=63.99 Aligned_cols=52 Identities=25% Similarity=0.637 Sum_probs=40.2
Q ss_pred CCCcccccccccccccccccccccCC-CCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcC
Q 045388 39 SSPPSRSSCEICRERRENDQMFKIES-CIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVL 101 (214)
Q Consensus 39 ~~~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l 101 (214)
......+.|+||++.+..+. .+. |+|.||..||..|+... + ...||. |...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~---~---~~~CP~--Cr~~~ 62 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQND 62 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHS---S---SSCCSS--SCCSS
T ss_pred ccCCCCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhc---C---CCcCCC--CCCcC
Confidence 34456789999999987653 356 99999999999999752 1 368999 87653
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=4.3e-09 Score=65.39 Aligned_cols=57 Identities=19% Similarity=0.574 Sum_probs=42.3
Q ss_pred ccccccccc-cccccccc-ccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhhc
Q 045388 44 RSSCEICRE-RRENDQMF-KIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKSV 109 (214)
Q Consensus 44 ~~~C~iC~~-~~~~~~~~-~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~~ 109 (214)
..+|+||++ .+..+... ..+.|||.||..|+..|+.. ...+||. |+..+..++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-------GAGNCPE--CGTPLRKSNFRVQ 61 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-------TSSSCTT--TCCCCSSCCCEEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-------CCCcCCC--CCCccccccceee
Confidence 478999999 66655321 24799999999999999752 1468999 9888876655443
No 31
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=2.8e-08 Score=64.48 Aligned_cols=50 Identities=26% Similarity=0.554 Sum_probs=40.4
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
.....+.|+||++.+..+. .+.|+|.||..|+..|+.. ...||. |...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPV---VTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEE---ECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred cCCCCCCCcCCCchhcCee---EccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 3445789999999986643 4799999999999999863 358999 888775
No 32
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=1.3e-08 Score=64.99 Aligned_cols=52 Identities=25% Similarity=0.647 Sum_probs=41.5
Q ss_pred CcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
.....+|+||++.+...+.+..+.|+|.||..|+..|+... ..||. |...+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCC
Confidence 34567899999998876655567899999999999998642 37999 877664
No 33
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1.7e-08 Score=67.55 Aligned_cols=59 Identities=19% Similarity=0.422 Sum_probs=44.9
Q ss_pred cccccccccccccccccccccC-CCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCc-CcHHH
Q 045388 42 PSRSSCEICRERRENDQMFKIE-SCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSV-LKFDA 105 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~-l~~~~ 105 (214)
...+.|+||++.+..+. .+ .|||.||+.||..|+...-..+ ...+||..+|... +...+
T Consensus 5 ~~~~~CPI~~~~~~dPV---~~~~cGh~f~r~cI~~~l~~~~~~~--~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPV---KNKVCGHTYEEDAIVRMIESRQKRK--KKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCSSEE---EESSSCCEEEHHHHHHHHHHHHTTT--CCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhcCCE---EcCCCCCeecHHHHHHHHHHccCcC--CCCCCCcCcCcccccCHhh
Confidence 45689999999887654 34 5999999999999997643222 3578999999876 65543
No 34
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.64 E-value=2.4e-08 Score=64.27 Aligned_cols=55 Identities=22% Similarity=0.423 Sum_probs=39.8
Q ss_pred Ccccccccccccccccccccc-cCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHH
Q 045388 41 PPSRSSCEICRERRENDQMFK-IESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFD 104 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~-~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 104 (214)
..+..+|+||++.+...+... .+.|||.||+.||..++.. ...+||. |...+...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTT--TCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCCC--CCCccCCC
Confidence 345689999999886443221 2359999999999988642 2468999 88877654
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=3.2e-08 Score=59.78 Aligned_cols=47 Identities=28% Similarity=0.596 Sum_probs=35.9
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCC
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPG 94 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 94 (214)
...+...|+||++.+..+. .+.|+|.||..|+..|+... . ...+||.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~----~-~~~~CP~ 57 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDL----E-RDFPCPV 57 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCC---CCSSCCCCCHHHHHHHTTSS----C-CSCCCSC
T ss_pred ccccCCCCccCCcccCccE---eCCCCCccCHHHHHHHHHhc----C-CCCCCCC
Confidence 3445789999999987653 47899999999999997531 1 3468887
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.59 E-value=1.7e-08 Score=68.16 Aligned_cols=66 Identities=24% Similarity=0.487 Sum_probs=46.1
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHh-hcCCHHHHHHHHH
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACK-SVLSKNVLELWEK 120 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~-~~l~~~~~~~~~~ 120 (214)
+..+|+||++.+..+.+ ...|||.||..|+..|+.. ...||. |+..+...++. +....++++.|..
T Consensus 21 ~~~~C~IC~~~~~~p~~--~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMI--IPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHTBCTTTCSBCSSEEE--CTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCcCE--ECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChhhCCcCHHHHHHHHHHHH
Confidence 35789999999876532 3489999999999999862 258999 98888764432 2222444444443
No 37
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.59 E-value=3.5e-08 Score=65.54 Aligned_cols=52 Identities=21% Similarity=0.505 Sum_probs=40.9
Q ss_pred CcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
.....+|+||++.+...+.+..+.|+|.||..|+..|+.. ...||. |...+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCC
Confidence 4456889999999877555556789999999999999842 237999 877664
No 38
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.58 E-value=1.7e-08 Score=60.33 Aligned_cols=49 Identities=22% Similarity=0.651 Sum_probs=37.6
Q ss_pred ccccccccccccccccccccCC-CCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcC
Q 045388 43 SRSSCEICRERRENDQMFKIES-CIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVL 101 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l 101 (214)
+..+|+||++.+...+....+. |+|.||.+|+..|+.. ...||. |...+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEe
Confidence 4578999999987754444454 9999999999999742 347999 87655
No 39
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.58 E-value=2.7e-09 Score=76.78 Aligned_cols=91 Identities=20% Similarity=0.464 Sum_probs=56.5
Q ss_pred cccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhhcCCHH-HHHHHHH
Q 045388 42 PSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKSVLSKN-VLELWEK 120 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~~l~~~-~~~~~~~ 120 (214)
.+.++|+||++.+..+. .+.|||.||..||..|+.. ....||. |...+..+....+++.+ ++ ..
T Consensus 29 ~~~~~C~IC~~~~~~pv---~~~CgH~FC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~l~~~~~~---~d 93 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPF---QAQCGHRYCSFCLASILSS-------GPQNCAA--CVHEGIYEEGISILESSSAF---PD 93 (141)
T ss_dssp CGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHGGG-------SCEECHH--HHHTTCCCTTTTEECGGGCE---EC
T ss_pred CcCcCCCCCChhhcCcE---ECCCCCccCHHHHHHHHhc-------CCCCCCC--CCCcccccccccccchhhhc---cc
Confidence 45789999999887663 4699999999999999841 2358998 76654333222222110 00 00
Q ss_pred HHHHHHhcCCCCcccCccCCCceeeecC
Q 045388 121 ALSQELIDASQGIYCPFKDCSAKLVYEN 148 (214)
Q Consensus 121 ~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 148 (214)
...++.+. .-.++||+.+|...+...+
T Consensus 94 ~~~~~~i~-~L~v~Cpn~GC~~~~~l~~ 120 (141)
T 3knv_A 94 NAARREVE-SLPAVCPSDGCTWKGTLKE 120 (141)
T ss_dssp HHHHHHHH-TSEEECCSTTCCCEEEHHH
T ss_pred HHHHHHHc-ccccccCCCCCCCEeEHHH
Confidence 11112222 3557899889998776654
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.50 E-value=3.3e-08 Score=69.52 Aligned_cols=49 Identities=24% Similarity=0.613 Sum_probs=39.4
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcH
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKF 103 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 103 (214)
..++|+||++.+..+. .++|||.||..|+..|+. . ....||. |...+..
T Consensus 51 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~-----~--~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPI---TTVCQHNVCKDCLDRSFR-----A--QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHH-----T--TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHHcCcE---EeeCCCcccHHHHHHHHh-----H--CcCCCCC--CCccCCC
Confidence 4578999999987653 469999999999999987 1 2468999 8877754
No 41
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.49 E-value=1.1e-07 Score=65.72 Aligned_cols=54 Identities=22% Similarity=0.555 Sum_probs=39.5
Q ss_pred ccccccccccccccc---------------ccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 44 RSSCEICRERRENDQ---------------MFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
..+|+||++.+.... +...+.|+|.||..||..|+...-.. ....||. |...+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~---~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD---GSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS---SCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC---CCCcCCC--CCCccC
Confidence 358999999986532 22257899999999999998543211 3568999 877664
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.46 E-value=2e-08 Score=73.04 Aligned_cols=50 Identities=24% Similarity=0.658 Sum_probs=40.5
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHH
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFD 104 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 104 (214)
+.+.|+||++.+..+. .+.|+|.||..|+..|+.. ....||. |...+...
T Consensus 77 ~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPV---TTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhcCCE---EcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 4678999999887654 4799999999999999963 2468999 88877654
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.43 E-value=6.8e-08 Score=66.93 Aligned_cols=52 Identities=25% Similarity=0.588 Sum_probs=40.8
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcH
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKF 103 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 103 (214)
...+.++|+||++.+..+. .+.|||.||..|+..|+.. ....||. |...+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEK-------ASLCCPF--CRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCE---ECTTSCEECHHHHCCCCCT-------TTSBCTT--TCCBCHH
T ss_pred CCCCCCCCccCCcccCcee---EcCCCCHHhHHHHHHHHhH-------CcCCCCC--CCcccCc
Confidence 3445789999999887653 4699999999999988741 2468999 9888865
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.41 E-value=1.4e-07 Score=58.92 Aligned_cols=48 Identities=33% Similarity=0.742 Sum_probs=37.6
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
...+|+||++.+..+. ..++|+|.||..|+..|+.. ...||. |...+.
T Consensus 4 ~~~~C~IC~~~~~~~~--~~~~C~H~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQ--------NPTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCE--EETTTTEEESTTHHHHHHHH--------SCSTTT--TCCCCC
T ss_pred CCCCCeeCCccccCCc--EecCCCCeeHHHHHHHHHhC--------cCcCcC--CChhhH
Confidence 3578999999986542 25789999999999999853 247999 877664
No 45
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.40 E-value=9.6e-08 Score=68.40 Aligned_cols=46 Identities=37% Similarity=0.775 Sum_probs=36.5
Q ss_pred cccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 44 RSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
..+|+||++.+..+. .++|||.||..|+..|+.. ...||. |...+.
T Consensus 53 ~~~C~iC~~~~~~~~---~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEAV---TLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSEE---EETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCC
T ss_pred cCCCcccCcccCCce---ECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCC
Confidence 468999999986643 4689999999999999742 357999 876664
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.38 E-value=3.4e-07 Score=59.90 Aligned_cols=51 Identities=12% Similarity=0.004 Sum_probs=41.3
Q ss_pred cccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHH
Q 045388 42 PSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDA 105 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 105 (214)
.+.+.|+||++.+..+. .+.|||.||+.||..|+.. ..+||. |+..+...+
T Consensus 12 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~ 62 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPV---RLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTESM 62 (85)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGG
T ss_pred chheECcccCchhcCCe---ECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChHh
Confidence 45799999999887764 4679999999999999973 247999 888887654
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=3.7e-08 Score=68.52 Aligned_cols=46 Identities=24% Similarity=0.603 Sum_probs=37.5
Q ss_pred cccccccccccccccccccC-CCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHH
Q 045388 44 RSSCEICRERRENDQMFKIE-SCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFD 104 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 104 (214)
.++|+||++.+..+. .+ .|||.||..|+..|+. ..||. |...+...
T Consensus 22 ~~~C~IC~~~~~~pv---~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~~ 68 (117)
T 1jm7_B 22 LLRCSRCTNILREPV---CLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWIQ 68 (117)
T ss_dssp TTSCSSSCSCCSSCB---CCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSCS
T ss_pred CCCCCCCChHhhCcc---EeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCccc
Confidence 589999999987653 35 8999999999999864 57999 88777543
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.36 E-value=9.5e-08 Score=57.41 Aligned_cols=45 Identities=22% Similarity=0.705 Sum_probs=35.6
Q ss_pred cccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 42 PSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
.+..+|+||++.+..+. .++|+|.||..|+.. ..+.||. |...+.
T Consensus 4 ~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK---LLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCS---CSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSS
T ss_pred ccCCCceEeCCccCCeE---EcCCCCcccHHHHcc-----------CCCCCCc--CCcEee
Confidence 35688999999987653 578999999999866 1468999 876654
No 49
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.33 E-value=1.8e-07 Score=64.03 Aligned_cols=49 Identities=29% Similarity=0.644 Sum_probs=38.4
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcH
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKF 103 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 103 (214)
+..+|+||++.+..+. ....|||.||..|+..|+.. ...||. |...+..
T Consensus 14 ~~~~C~IC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDAT--TIIECLHSFCKTCIVRYLET--------SKYCPI--CDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEE--EETTTCCEEEHHHHHHHHTS--------CSBCTT--TCCBSCS
T ss_pred CcCCCccCChHHhCcC--EeCCCCChhhHHHHHHHHHh--------CCcCcC--CCccccc
Confidence 4689999999987643 23499999999999999853 268999 8776653
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.30 E-value=2.3e-07 Score=62.41 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=41.0
Q ss_pred cccccccccccccccccccccCCCC-ccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHH
Q 045388 42 PSRSSCEICRERRENDQMFKIESCI-HSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDA 105 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~-H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 105 (214)
.+.+.|+||++.+..+. .+.|| |.||+.||..|+.. ..+||. |+..+..++
T Consensus 20 p~~~~CpI~~~~m~dPV---~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTTT
T ss_pred cHhcCCcCccccccCCe---ECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChhh
Confidence 45789999999887764 46899 99999999999863 237999 888887543
No 51
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1e-07 Score=59.88 Aligned_cols=48 Identities=33% Similarity=0.776 Sum_probs=37.4
Q ss_pred CcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
.....+|+||++.+.. ..+.|+|.||..|+..|+. ....||. |...+.
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~--------~~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSD--------RHRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSC--------CCSSCHH--HHHCTT
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHH--------CcCcCCC--cCCccc
Confidence 3456899999999866 2578999999999999875 1457998 765554
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=2.3e-06 Score=68.06 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=42.0
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHH
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDA 105 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 105 (214)
.....+.|+||++.+..+. .++|||+||+.||..|+.. .+ ..||. |+..+...+
T Consensus 204 ~~~~~~~c~i~~~~~~dPv---~~~~gh~f~~~~i~~~~~~---~~----~~cP~--~~~~~~~~~ 257 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQR---VG----HFNPV--TRSPLTQEQ 257 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEE---ECSSCCEEETTHHHHHHHH---TC----SSCTT--TCCCCCGGG
T ss_pred CCCcccCCcCcCCHhcCCe---ECCCCCEECHHHHHHHHHH---CC----CCCcC--CCCCCchhc
Confidence 3446789999999987764 4679999999999999864 12 23999 888886543
No 53
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.19 E-value=5e-07 Score=70.61 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=44.5
Q ss_pred cccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHH
Q 045388 42 PSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDAC 106 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~ 106 (214)
...+.|+||++.+..+. ....|||.||+.||..|+.. + ....||..||...+...++
T Consensus 179 ~~el~CPIcl~~f~DPV--ts~~CGHsFcR~cI~~~~~~----~--~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 179 KIELTCPITCKPYEAPL--ISRKCNHVFDRDGIQNYLQG----Y--TTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp BCCSBCTTTSSBCSSEE--EESSSCCEEEHHHHHHHSTT----C--SCEECSGGGCSCEECGGGE
T ss_pred ceeeECcCccCcccCCe--eeCCCCCcccHHHHHHHHHh----C--CCCCCCcccccCcCchhhC
Confidence 34678999999987663 23589999999999999863 1 2468999999988876543
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.18 E-value=5.5e-07 Score=60.73 Aligned_cols=50 Identities=12% Similarity=-0.008 Sum_probs=40.3
Q ss_pred cccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHH
Q 045388 42 PSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFD 104 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 104 (214)
.+.+.|+||++.+..+. .++|||.||+.||..|+.. ..+||. |+..+...
T Consensus 27 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPV---RLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSEE---EETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCTT
T ss_pred cHhhCCcCccCcccCCe---ECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCChh
Confidence 45789999999887764 4679999999999999852 247999 88888654
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=9.9e-07 Score=57.08 Aligned_cols=52 Identities=25% Similarity=0.537 Sum_probs=37.6
Q ss_pred ccccccccccccccc-----------cc-ccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcH
Q 045388 42 PSRSSCEICRERREN-----------DQ-MFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKF 103 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~-----------~~-~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 103 (214)
.+..+|+||++++.. .+ ......|+|.|+.+||..|+.. .-.||. |...+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--------NNRCPL--CQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--------CCBCTT--TCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--------CCCCCC--cCCCcch
Confidence 356779999998854 12 2334579999999999999753 137999 8877653
No 56
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.14 E-value=1.3e-06 Score=64.40 Aligned_cols=49 Identities=33% Similarity=0.784 Sum_probs=38.6
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
..+.|+||++.+..+. ....|||.||..|+..|+.. ....||. |...+.
T Consensus 53 ~~~~C~IC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTM--TTKECLHRFCADCIITALRS-------GNKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEE--EETTTCCEEEHHHHHHHHHT-------TCCBCTT--TCCBCC
T ss_pred CCCCCcccChHhhCcC--EeCCCCChhHHHHHHHHHHh-------CcCCCCC--CCCcCC
Confidence 4579999999987643 23599999999999999862 1467999 887774
No 57
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=3.8e-06 Score=54.11 Aligned_cols=57 Identities=21% Similarity=0.553 Sum_probs=42.7
Q ss_pred CCCCcccccccccccccccccccccCCCC-----ccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcH
Q 045388 38 PSSPPSRSSCEICRERRENDQMFKIESCI-----HSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKF 103 (214)
Q Consensus 38 ~~~~~~~~~C~iC~~~~~~~~~~~~~~C~-----H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 103 (214)
.........|.||++++...+.+ .++|. |.|+.+||..|+... ....||. |...+..
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~------~~~~Cpl--Cr~~~~~ 70 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS------DTRCCEL--CKYEFIM 70 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH------CCSBCSS--SCCBCCC
T ss_pred CCCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC------CCCCCCC--CCCeeec
Confidence 34445567899999988655444 47886 999999999999753 1368999 8876653
No 58
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.04 E-value=1.2e-05 Score=59.65 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=42.5
Q ss_pred CCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHH
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDA 105 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~ 105 (214)
.....+.|+||++.+..+. .++|||.||+.||..|+... +. .||. |+..+...+
T Consensus 102 ~ip~~f~CPI~~elm~DPV---~~~~Ghtfer~~I~~~l~~~---~~----tcP~--t~~~l~~~~ 155 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRV---GH----FDPV--TRSPLTQDQ 155 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHT---CS----BCTT--TCCBCCGGG
T ss_pred CCcHhhcccCccccCCCCe---ECCCCCEECHHHHHHHHHhC---CC----CCCC--CcCCCChhh
Confidence 3456899999999887654 46899999999999999752 22 6999 888887653
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.02 E-value=1.5e-06 Score=61.30 Aligned_cols=58 Identities=24% Similarity=0.630 Sum_probs=44.1
Q ss_pred Ccccccccccccccccc----cccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhh
Q 045388 41 PPSRSSCEICRERREND----QMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKS 108 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~----~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~ 108 (214)
+.....|+||++.+... .....+.|+|.||..|+..|+.. ...||. |...+..+++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHP 130 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGGEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--------CCCCCC--CCCcCChhccee
Confidence 34578899999988653 11235799999999999999864 248999 998887776544
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.96 E-value=4.6e-06 Score=51.20 Aligned_cols=51 Identities=20% Similarity=0.511 Sum_probs=37.2
Q ss_pred CcccccccccccccccccccccCCCCcc-ccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHS-FCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
......|.||++......++ ..+|||. ||.+|+..+... .-+||. |...+.
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~-~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 55 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNII-HGRTGHLVTCFHCARRLKKA--------GASCPI--CKKEIQ 55 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEE-ETTEEEEEECHHHHHHHHHT--------TCBCTT--TCCBCC
T ss_pred CCcCCCCcccCCcCCCeEEE-ecCCCCHhHHHHHHHHHHHh--------CCcCCC--cCchhh
Confidence 44567899999976544322 3599998 999999987642 247999 877663
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.96 E-value=1.6e-06 Score=55.04 Aligned_cols=42 Identities=29% Similarity=0.668 Sum_probs=33.4
Q ss_pred cccccccccccccccccccCCCCcc-ccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 44 RSSCEICRERRENDQMFKIESCIHS-FCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
...|.||++.+.... .++|||. ||..|+..| ..||. |...+.
T Consensus 24 ~~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAIV---FVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCEE---EETTCCBCCCHHHHTTC------------SBCTT--TCCBCS
T ss_pred CCCCCCCCCCCCCEE---EcCCCChhHHHHhhhcC------------ccCCC--cCcCcc
Confidence 478999999876543 4699999 999998766 57999 877664
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=4.4e-06 Score=53.11 Aligned_cols=42 Identities=29% Similarity=0.670 Sum_probs=32.6
Q ss_pred cccccccccccccccccccCCCCcc-ccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 44 RSSCEICRERRENDQMFKIESCIHS-FCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
..+|+||++.+.... .++|+|. ||..|+.. ...||. |...+.
T Consensus 25 ~~~C~IC~~~~~~~~---~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~ 67 (75)
T 2ecg_A 25 EKLCKICMDRNIAIV---FVPCGHLVTCKQCAEA------------VDKCPM--CYTVIT 67 (75)
T ss_dssp HHSCSSSCSSCCCBC---CSSSCCCCBCHHHHHH------------CSBCTT--TCCBCC
T ss_pred CCCCCcCCCCCCCEE---EecCCCHHHHHHHhhC------------CCCCcc--CCceec
Confidence 468999999876543 5799999 99999842 257999 877664
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=1.1e-05 Score=50.28 Aligned_cols=50 Identities=22% Similarity=0.632 Sum_probs=37.3
Q ss_pred CCCCCCcccccccccccccccccccccCCCCcc-ccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 36 ASPSSPPSRSSCEICRERRENDQMFKIESCIHS-FCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 36 ~~~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
+.+....+...|.||++..... .+++|+|. ||..|+.. ...||. |...+.
T Consensus 7 e~e~~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~ 57 (68)
T 2ea5_A 7 GVEPSEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQ 57 (68)
T ss_dssp CCCCSCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH------------CSSCTT--TCCCCC
T ss_pred cccccCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc------------CCCCCC--CCcchh
Confidence 4455566678999999976543 25899999 99999883 147999 877653
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.84 E-value=9.2e-06 Score=55.22 Aligned_cols=49 Identities=24% Similarity=0.492 Sum_probs=37.1
Q ss_pred cccccccccccccccc---------------cccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 44 RSSCEICRERRENDQM---------------FKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~---------------~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
..+|.||++.+...-. +..+.|+|.|+..||..|+.. ...||. |...+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcce
Confidence 4679999999875411 224789999999999999753 247999 887654
No 65
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.82 E-value=8.9e-06 Score=50.03 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=36.5
Q ss_pred cccccccccccccccccccccCCCCcc-ccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 42 PSRSSCEICRERRENDQMFKIESCIHS-FCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
.+..+|.||++......+. .++|||. ||.+|+..+... .-+||. |...+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~-~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIV-HGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEE-ETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEE-CCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 3567899999986554321 2499999 899999988741 237999 877663
No 66
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.64 E-value=3.1e-05 Score=64.12 Aligned_cols=47 Identities=30% Similarity=0.725 Sum_probs=37.2
Q ss_pred ccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcH
Q 045388 45 SSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKF 103 (214)
Q Consensus 45 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 103 (214)
.+|+||++.+..+. .++|||.||..|+..|+.. ....||. |...+..
T Consensus 333 ~~C~ICle~~~~pv---~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDKDVK---IEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBCCEE---EETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCE
T ss_pred CCCCccCcCCCCeE---EeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCC
Confidence 68999999875542 5799999999999999863 1358999 8876654
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.56 E-value=1.2e-05 Score=51.63 Aligned_cols=43 Identities=28% Similarity=0.707 Sum_probs=33.1
Q ss_pred cccccccccccccccccccCCCCcc-ccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcH
Q 045388 44 RSSCEICRERRENDQMFKIESCIHS-FCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKF 103 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 103 (214)
...|.||++...... .++|||. ||..|+..+ ..||. |...+..
T Consensus 18 ~~~C~IC~~~~~~~v---~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINST---FCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEE---EETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCEeEEeCcccCcEE---EECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 368999999865432 5799999 999998754 28999 8876654
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.47 E-value=1.9e-05 Score=54.51 Aligned_cols=49 Identities=27% Similarity=0.532 Sum_probs=0.0
Q ss_pred cccccccccccccc---------------ccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcH
Q 045388 45 SSCEICRERRENDQ---------------MFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKF 103 (214)
Q Consensus 45 ~~C~iC~~~~~~~~---------------~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~ 103 (214)
.+|.||++.+...- .+..+.|+|.|+..||..|+.. .-.||. |...+..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------~~~CP~--Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEF 112 (117)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------CCcCCC--CCCeeee
Confidence 58999999986531 1113589999999999999864 237998 8776543
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.32 E-value=0.00023 Score=44.82 Aligned_cols=55 Identities=22% Similarity=0.468 Sum_probs=40.8
Q ss_pred CCCCcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 38 PSSPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 38 ~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
........+|.||++.+...+ ....|+|.|...||..|++.+ . .-+||. |+..+.
T Consensus 9 ~~y~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~----~--~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 9 ETYPDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSN----A--EPRCPH--CNDYWP 63 (74)
T ss_dssp CCCSSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTC----S--SCCCTT--TCSCCC
T ss_pred hhccCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhc----C--CCCCCC--CcCcCC
Confidence 334455789999999987543 245999999999999998532 1 247999 877664
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.10 E-value=0.00039 Score=56.35 Aligned_cols=60 Identities=22% Similarity=0.448 Sum_probs=43.6
Q ss_pred ccccccccccccccc-cccc----ccCCCCccccHHHHHHHHHHHhhCCCccc---ccCCCCCCCCcCcH
Q 045388 42 PSRSSCEICRERREN-DQMF----KIESCIHSFCSDCINKHVATKIQGGIITP---VTCPGPDCKSVLKF 103 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~-~~~~----~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~---i~CP~~~C~~~l~~ 103 (214)
....+|+|||+.+.. ..+. ....|+|.|...|+..|+...-.....+. =.||. |...+.-
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 457789999998775 2222 14589999999999999987665443222 27998 8887753
No 71
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.90 E-value=0.00061 Score=41.04 Aligned_cols=40 Identities=25% Similarity=0.718 Sum_probs=34.3
Q ss_pred CCCcccCccCCCceeeecCCCCCCcCcccCCC--CChhhccccCCCCC
Q 045388 130 SQGIYCPFKDCSAKLVYENDGEDVLSESECPY--CHRLFCAHCYVPWH 175 (214)
Q Consensus 130 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~h 175 (214)
.+.+.|| +|...+..+++- +.++|.. |+..||+.|..+|.
T Consensus 4 ~~~k~CP--~C~~~Iek~~GC----nhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 4 ANTKECP--KCHVTIEKDGGC----NHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCCT--TTCCCCSSCCSC----CSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ccceECc--CCCCeeEeCCCC----CcEEECCCCcCCEEeeCcCCCcc
Confidence 3557899 999999998774 7889987 99999999999874
No 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.86 E-value=0.00016 Score=59.19 Aligned_cols=42 Identities=24% Similarity=0.763 Sum_probs=33.3
Q ss_pred cccccccccccccccccccCCCCcc-ccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 44 RSSCEICRERRENDQMFKIESCIHS-FCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
...|+||++.+.... .++|||. ||..|+..+ ..||. |...+.
T Consensus 295 ~~~C~IC~~~~~~~v---~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVV---FIPCGHLVVCQECAPSL------------RKCPI--CRGIIK 337 (345)
T ss_dssp TCBCTTTSSSBCCEE---EETTCCEEECTTTGGGC------------SBCTT--TCCBCC
T ss_pred CCCCCccCCcCCceE---EcCCCChhHhHHHHhcC------------CcCCC--CCCCcc
Confidence 468999999876543 4699999 999998755 47999 877664
No 73
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.39 E-value=0.009 Score=37.46 Aligned_cols=56 Identities=29% Similarity=0.629 Sum_probs=42.2
Q ss_pred CCcccccccccccccccccccccCC-CCccccHHHHHHHHHHHhhCCCcccccCCCC-CCC
Q 045388 40 SPPSRSSCEICRERRENDQMFKIES-CIHSFCSDCINKHVATKIQGGIITPVTCPGP-DCK 98 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~-~C~ 98 (214)
.+.....|.+|.+.++...+++..+ =.|.||..|-+.+|+.+-..+ .+.||.. .|.
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~---EvyCPSG~kCp 68 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG---EVYCPSGEKCP 68 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS---CCCCTTSSCCB
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC---cEECCCCCccc
Confidence 3566899999999999888766222 269999999999999876543 5777773 443
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=43.35 Aligned_cols=34 Identities=21% Similarity=0.694 Sum_probs=26.7
Q ss_pred cccccccccccccccccccCCCCccccHHHHHHH
Q 045388 44 RSSCEICRERRENDQMFKIESCIHSFCSDCINKH 77 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 77 (214)
...|+||.+++..+.+...+.|+|.||..|++.+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4789999986544444445899999999999983
No 75
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.19 E-value=0.0017 Score=39.21 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=38.4
Q ss_pred cccccccccccccccccccC-CCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHh
Q 045388 44 RSSCEICRERRENDQMFKIE-SCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACK 107 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~ 107 (214)
.+.|+|+++.+..+. .. .+||.|++.++..|+... + +||. .+..|..+++.
T Consensus 3 ~~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~---~-----~cP~--t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDT---G-----NDPI--TNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHH---S-----BCTT--TCCBCCGGGCE
T ss_pred eEEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhC---C-----CCcC--CcCCCChhhcE
Confidence 478999999887653 34 899999999999999742 1 3898 66777665543
No 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.96 E-value=0.016 Score=34.71 Aligned_cols=49 Identities=20% Similarity=0.496 Sum_probs=35.4
Q ss_pred ccccccccccccccccccccCCC--Cc---cccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 43 SRSSCEICRERRENDQMFKIESC--IH---SFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C--~H---~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
+...|.||+++...+ + .++| .| .|..+||..|+...- ..+||. |+..+.
T Consensus 5 ~~~~CrIC~~~~~~~-l--~~PC~C~gs~~~~H~~Cl~~W~~~~~------~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNE-R--FRACGCTGELENVHRSCLSTWLTISR------NTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCC-C--CCSCCCSSGGGSCCHHHHHHHHHHHT------CSBCTT--TCCBCC
T ss_pred CCCEeEEeecCCCCc-e--ecCcCCCCchhhhHHHHHHHHHHhCC------CCccCC--CCCeee
Confidence 457899999985433 3 3554 45 899999999997532 368999 887664
No 77
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.87 E-value=0.0046 Score=40.79 Aligned_cols=32 Identities=28% Similarity=0.573 Sum_probs=23.1
Q ss_pred cccccccccccccccccCCCCccccHHHHHHHHH
Q 045388 46 SCEICRERRENDQMFKIESCIHSFCSDCINKHVA 79 (214)
Q Consensus 46 ~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~ 79 (214)
.|++|--+ ...-..+.+|.|.||.+|+..|..
T Consensus 3 fC~~C~~P--i~iygRmIPCkHvFCydCa~~~~~ 34 (101)
T 3vk6_A 3 FCDKCGLP--IKVYGRMIPCKHVFCYDCAILHEK 34 (101)
T ss_dssp BCTTTCSB--CSEEEEEETTCCEEEHHHHHHHHH
T ss_pred ecCccCCC--eEEEeeeccccccHHHHHHHHHHh
Confidence 47777443 333344789999999999999864
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=93.67 E-value=0.08 Score=33.91 Aligned_cols=61 Identities=25% Similarity=0.595 Sum_probs=45.1
Q ss_pred CcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccceecCCCCC
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERTGGCLH 210 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek~~GCnh 210 (214)
...|. -|+--+-.+..+ ...+.|..|+.-.|.-|.. +.+....+.||+|++...+.-|...
T Consensus 16 ~qiCq--iCGD~VG~~~~G---e~FVAC~eC~FPvCrpCyE-------------YErkeG~q~CpqCktrYkr~kgsp~ 76 (93)
T 1weo_A 16 GQFCE--ICGDQIGLTVEG---DLFVACNECGFPACRPCYE-------------YERREGTQNCPQCKTRYKRLRGSPR 76 (93)
T ss_dssp SCBCS--SSCCBCCBCSSS---SBCCSCSSSCCCCCHHHHH-------------HHHHTSCSSCTTTCCCCCCCTTCCC
T ss_pred CCccc--cccCccccCCCC---CEEEeeeccCChhhHHHHH-------------HHHhccCccccccCCccccccCCCC
Confidence 34566 677666555544 2778899999999988853 5567788999999999987666543
No 79
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.34 E-value=0.14 Score=39.53 Aligned_cols=52 Identities=21% Similarity=0.459 Sum_probs=39.0
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHH
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFD 104 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 104 (214)
....|.+|.+.+.... ....|+|.|...|+..|++. . ...+||. |+..++.+
T Consensus 179 ~i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~-----~-~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQS-----N-AEPRCPH--CNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTT-----C-SSCBCTT--TCCBCCSC
T ss_pred CCCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHh-----C-CCCCCCC--CCCCCCCC
Confidence 3678999999887543 24469999999999999853 1 2468998 88766543
No 80
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=90.25 E-value=0.18 Score=31.04 Aligned_cols=33 Identities=21% Similarity=0.654 Sum_probs=24.0
Q ss_pred CCCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCcccee
Q 045388 160 PYCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIER 204 (214)
Q Consensus 160 ~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek 204 (214)
+.||+.||..|.. .|.+......||.|+..+.+
T Consensus 32 ~~CgH~fC~~Ci~------------~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 32 PCCGNSYCDECIR------------TALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SSSCCEECTTHHH------------HHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCHHHHHHHH------------HHHHhcCCCcCCCCCCcCCC
Confidence 3489999999953 34444456799999997543
No 81
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=88.73 E-value=0.21 Score=32.89 Aligned_cols=48 Identities=27% Similarity=0.718 Sum_probs=31.9
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCcccee
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIER 204 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek 204 (214)
..|| -|...+.. .+.+..||+.||..|... |..... ..||.|+..+..
T Consensus 23 ~~C~--IC~~~~~~---------p~~~~~CgH~FC~~Ci~~------------~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCF--ICMEKLRD---------ARLCPHCSKLCCFSCIRR------------WLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp TBCT--TTCSBCSS---------EEECTTTCCEEEHHHHHH------------HHHHTC-SBCTTTCCBCCG
T ss_pred CCCc--cCCccccC---------ccccCCCCChhhHHHHHH------------HHHHCc-CCCCCCCCcCCH
Confidence 4577 77665531 233567999999999643 333322 689999998754
No 82
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=87.80 E-value=0.14 Score=30.42 Aligned_cols=44 Identities=32% Similarity=0.802 Sum_probs=30.6
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCC
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCK 199 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~ 199 (214)
..|- .|...+.. ....+|+.|+..||..|..-.|+ ....||.|.
T Consensus 16 ~~C~--~C~~~~~~-------~~~y~C~~C~~~FC~dCD~fiHe--------------~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCY--GCQGELKD-------QHVYVCAVCQNVFCVDCDVFVHD--------------SLHSCPGCI 59 (59)
T ss_dssp CEET--TTTEECTT-------SEEECCTTTTCCBCHHHHHTTTT--------------TSCSSSTTC
T ss_pred Cccc--ccCcccCC-------CccEECCccCcCcccchhHHHHh--------------hccCCcCCC
Confidence 3466 67666521 12367999999999999887774 356788773
No 83
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=86.44 E-value=0.53 Score=32.84 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=26.5
Q ss_pred cCCCCcccCccCCCceeeecCCCCCCcCcccCCCCChhh
Q 045388 128 DASQGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 128 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
......+|| .|+..+....+.......+.|+.|++..
T Consensus 20 ~~~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 20 HMTTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp --CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cccCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 345678999 9999998876532334678899998754
No 84
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=86.13 E-value=0.27 Score=32.34 Aligned_cols=32 Identities=34% Similarity=0.859 Sum_probs=24.6
Q ss_pred CCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccceec
Q 045388 161 YCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERT 205 (214)
Q Consensus 161 ~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek~ 205 (214)
-|+.+||..|.. .....+.+.||.|+..|++.
T Consensus 19 PCkHvFCydCa~-------------~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 19 PCKHVFCYDCAI-------------LHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp TTCCEEEHHHHH-------------HHHHTTCCBCTTTCCBCSEE
T ss_pred cccccHHHHHHH-------------HHHhccCCCCcCcCCeeeee
Confidence 578999999953 22345679999999998775
No 85
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=85.99 E-value=0.34 Score=31.08 Aligned_cols=49 Identities=18% Similarity=0.554 Sum_probs=31.7
Q ss_pred CCcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccc
Q 045388 131 QGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHI 202 (214)
Q Consensus 131 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~i 202 (214)
+...|| -|...+.. + +.-+.||+.||..|.. .+....+...||.|+..+
T Consensus 12 ~~~~C~--IC~~~~~~--------p-~~~~~CgH~fC~~Ci~------------~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCL--ICKDIMTD--------A-VVIPCCGNSYCDECIR------------TALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEET--TTTEECSS--------C-EECTTTCCEECHHHHH------------HHHHHCTTCCCTTTCCSS
T ss_pred cCCCCC--CCChhhcC--------c-eECCCCCCHHHHHHHH------------HHHHhcCCCcCcCCCCcC
Confidence 345677 77755531 1 1223489999999954 344444557999999976
No 86
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.33 E-value=0.48 Score=29.08 Aligned_cols=33 Identities=30% Similarity=0.669 Sum_probs=24.1
Q ss_pred CCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccceecCC
Q 045388 161 YCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERTGG 207 (214)
Q Consensus 161 ~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek~~G 207 (214)
.|+..||..|... |.+.. ..||.|+..|....|
T Consensus 43 ~C~H~fh~~Ci~~------------w~~~~--~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 43 PCNHEFHAKCVDK------------WLKAN--RTCPICRADSGPSSG 75 (75)
T ss_dssp TTTEEEETTHHHH------------HHHHC--SSCTTTCCCCCCCCC
T ss_pred CCCCHhHHHHHHH------------HHHcC--CcCcCcCCcCCCCCC
Confidence 4899999999643 33332 589999999877665
No 87
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=85.05 E-value=0.44 Score=28.68 Aligned_cols=35 Identities=20% Similarity=0.574 Sum_probs=27.5
Q ss_pred CCcccccccccccccccccccccCCC-CccccHHHHHHHH
Q 045388 40 SPPSRSSCEICRERRENDQMFKIESC-IHSFCSDCINKHV 78 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~ 78 (214)
.+.+..-|.||.++- .+..+.| +..||..||+..-
T Consensus 4 ~~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 4 GSSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SCCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHHT
T ss_pred cCcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHHc
Confidence 345677899999963 3457899 7899999999976
No 88
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.38 E-value=0.47 Score=29.60 Aligned_cols=37 Identities=22% Similarity=0.555 Sum_probs=24.7
Q ss_pred CCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccceec
Q 045388 161 YCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERT 205 (214)
Q Consensus 161 ~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek~ 205 (214)
.|++.||..|...| +...........||.|+..+...
T Consensus 36 ~CgH~fC~~Ci~~~--------~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 36 DCGHSFCQACLTAN--------HKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp SSSCCBCTTHHHHH--------HHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCHHHHHHHHHH--------HHHhhcCCCCCcCCCCCCccCHH
Confidence 58999999996432 11111234578999999988754
No 89
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=83.08 E-value=0.69 Score=32.07 Aligned_cols=46 Identities=13% Similarity=0.317 Sum_probs=33.1
Q ss_pred ccCCCCCCC---CcCcHHHHhhcCCHHHHHHHHHHHHHHHhcCCCCcccCccCCCceeeec
Q 045388 90 VTCPGPDCK---SVLKFDACKSVLSKNVLELWEKALSQELIDASQGIYCPFKDCSAKLVYE 147 (214)
Q Consensus 90 i~CP~~~C~---~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~ 147 (214)
..||. |+ ..+....|+++|.++.++ +...++.+|++|+|...++..
T Consensus 2 ~~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~~ 50 (130)
T 2hu9_A 2 MRCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFNE 50 (130)
T ss_dssp CBCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEECS
T ss_pred CcCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEECC
Confidence 46998 65 466788888888765432 344678899999999766543
No 90
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.90 E-value=0.5 Score=31.90 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=29.6
Q ss_pred CcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCcccee
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIER 204 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek 204 (214)
...|| -|...+.. +.. -..||+.||..|...|-. ..||.|+..+..
T Consensus 22 ~~~C~--IC~~~~~~--------pv~-~~~CgH~fC~~Ci~~~~~----------------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCS--RCTNILRE--------PVC-LGGCEHIFCSNCVSDCIG----------------TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCS--SSCSCCSS--------CBC-CCSSSCCBCTTTGGGGTT----------------TBCSSSCCBCSC
T ss_pred CCCCC--CCChHhhC--------ccE-eCCCCCHHHHHHHHHHhc----------------CCCcCCCCcCcc
Confidence 45687 77655532 111 115899999999876532 678888887743
No 91
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=82.50 E-value=0.59 Score=26.63 Aligned_cols=29 Identities=21% Similarity=0.668 Sum_probs=18.2
Q ss_pred CCcccCccCCCceeeecCCCCCCcCcccCCCCChh
Q 045388 131 QGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRL 165 (214)
Q Consensus 131 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 165 (214)
...+|| .|+..++..+.. .+..|+.||..
T Consensus 18 ~~k~CP--~CG~~~fm~~~~----~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCP--RCGPGVFMADHG----DRWACGKCGYT 46 (50)
T ss_dssp SSEECS--SSCSSCEEEECS----SEEECSSSCCE
T ss_pred ecccCC--CCCCceEEecCC----CeEECCCCCCE
Confidence 345899 898733332222 56788888864
No 92
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=82.10 E-value=0.36 Score=29.77 Aligned_cols=27 Identities=33% Similarity=0.653 Sum_probs=21.8
Q ss_pred CCChh-hccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccceec
Q 045388 161 YCHRL-FCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERT 205 (214)
Q Consensus 161 ~C~~~-~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek~ 205 (214)
.||+. ||..|...| +.||-|+..|.+.
T Consensus 41 pCgH~~~C~~C~~~~------------------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------DKCPMCYTVITFK 68 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------SBCTTTCCBCSEE
T ss_pred CCCChhHHHHhhhcC------------------ccCCCcCcCccCc
Confidence 57888 999996643 8999999988653
No 93
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=81.48 E-value=0.43 Score=32.03 Aligned_cols=30 Identities=20% Similarity=0.604 Sum_probs=23.9
Q ss_pred CCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccce
Q 045388 161 YCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIE 203 (214)
Q Consensus 161 ~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~ie 203 (214)
.||+.||..|...|... ....||.|+..+.
T Consensus 32 ~CgH~fC~~Ci~~~~~~-------------~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVEK-------------ASLCCPFCRRRVS 61 (115)
T ss_dssp TTSCEECHHHHCCCCCT-------------TTSBCTTTCCBCH
T ss_pred CCCCHHhHHHHHHHHhH-------------CcCCCCCCCcccC
Confidence 58999999999877632 2378999999775
No 94
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=80.18 E-value=0.87 Score=30.36 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=24.8
Q ss_pred CCCChhhccccCCCCCCChHHHHHHHHHHh---CCCccCCCCCccceecC
Q 045388 160 PYCHRLFCAHCYVPWHPGREELMMRELVKK---KQLRKCPNCKYHIERTG 206 (214)
Q Consensus 160 ~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~---~~~k~CP~C~~~iek~~ 206 (214)
..|++.||..|... |... .....||-|+..+.+..
T Consensus 59 ~~C~H~Fh~~Ci~~------------wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 59 TKCSHAFHLLCLLA------------MYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SSSCCEECHHHHHH------------HHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCCCcccHHHHHH------------HHHcccCCCCCcCCCCCCccCCCC
Confidence 46899999999643 3332 34568999999876543
No 95
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=78.52 E-value=1.4 Score=29.74 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=25.3
Q ss_pred CcccCccCCCceeeecCCCCCCcCcccCCCCChhhc
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFC 167 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C 167 (214)
..+|| .|+..+............+.|..|++.+=
T Consensus 4 m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 46899 99999888765333456788999987653
No 96
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=78.36 E-value=1.5 Score=27.44 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=15.4
Q ss_pred cccCCCCCCCCcCcHHHH-hhcCC
Q 045388 89 PVTCPGPDCKSVLKFDAC-KSVLS 111 (214)
Q Consensus 89 ~i~CP~~~C~~~l~~~~~-~~~l~ 111 (214)
-.+||. |+.+|+..++ ...|.
T Consensus 8 ~~~~Pl--CG~~L~W~eLIeQML~ 29 (95)
T 2k5c_A 8 MAKCPI--CGSPLKWEELIEEMLI 29 (95)
T ss_dssp CEECSS--SCCEECHHHHHHHSTT
T ss_pred cccCCc--CCCccCHHHHHHHHHh
Confidence 358999 9999997765 44444
No 97
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=78.02 E-value=12 Score=26.18 Aligned_cols=51 Identities=22% Similarity=0.576 Sum_probs=34.5
Q ss_pred CcccccccccccccccccccccCCCCccccHHHHHHHHH----HHh--hCCCcccccCCCCCCCC
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVA----TKI--QGGIITPVTCPGPDCKS 99 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~----~~i--~~~~~~~i~CP~~~C~~ 99 (214)
+.....|.+|.+. .+++..-.|...||..|+...+. ..+ .++. -.||. |..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~---W~C~~--C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQ---WYCYI--CHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTC---CCCTT--TCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCC---CEeec--ccC
Confidence 3346789999884 34455678999999999997663 222 3344 56888 553
No 98
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=77.95 E-value=1.4 Score=24.59 Aligned_cols=29 Identities=31% Similarity=0.655 Sum_probs=17.4
Q ss_pred ccCccCCCceeeecCCCCCCcCcccCCCCChhh
Q 045388 134 YCPFKDCSAKLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 134 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
.|- .|+..+..++. ...+.++||.||..+
T Consensus 5 ~C~--rCg~~fs~~el--~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 5 RCG--KCWKTFTDEQL--KVLPGVRCPYCGYKI 33 (48)
T ss_dssp CCC--CTTTTCCCCCS--CCCSSSCCTTTCCSC
T ss_pred Eee--ccCCCccHHHH--hhCCCcccCccCcEE
Confidence 355 66666665544 345667777777543
No 99
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.69 E-value=6.7 Score=25.04 Aligned_cols=51 Identities=27% Similarity=0.613 Sum_probs=36.2
Q ss_pred cccccccccccccc----ccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCc
Q 045388 43 SRSSCEICRERREN----DQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLK 102 (214)
Q Consensus 43 ~~~~C~iC~~~~~~----~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~ 102 (214)
....|+||-+++.. +.++....|+-.+|+.|+.--. ++|. -.||. |+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----keG~---q~Cpq--CktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----REGT---QNCPQ--CKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----HTSC---SSCTT--TCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----hccC---ccccc--cCCccc
Confidence 45789999999643 2344467888999999976543 3444 57998 877664
No 100
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=76.16 E-value=1.6 Score=24.59 Aligned_cols=29 Identities=28% Similarity=0.783 Sum_probs=19.0
Q ss_pred CcccCccCCCc-eeeecCCCCCCcCcccCCCCChhh
Q 045388 132 GIYCPFKDCSA-KLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 132 ~~~Cp~~~C~~-~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
.+.|| .|+. -+..+... ..+.|+.||.++
T Consensus 5 ~~~CP--~C~~~~l~~d~~~----gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCP--ACESAELIYDPER----GEIVCAKCGYVI 34 (50)
T ss_dssp CCSCT--TTSCCCEEEETTT----TEEEESSSCCBC
T ss_pred cEeCc--CCCCcceEEcCCC----CeEECcccCCcc
Confidence 45688 8987 66665442 456787777655
No 101
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.98 E-value=4.4 Score=27.69 Aligned_cols=36 Identities=19% Similarity=0.464 Sum_probs=25.7
Q ss_pred Ccccccccccccccccccc-cccCCCCccccHHHHHH
Q 045388 41 PPSRSSCEICRERRENDQM-FKIESCIHSFCSDCINK 76 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~ 76 (214)
+.....|.+|...|....- .....||+.||..|...
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3456789999998864311 12678999999999654
No 102
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=75.82 E-value=1.2 Score=30.97 Aligned_cols=32 Identities=22% Similarity=0.544 Sum_probs=23.7
Q ss_pred cccccccccccccccc--cccccCCCCccccHHH
Q 045388 42 PSRSSCEICRERREND--QMFKIESCIHSFCSDC 73 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~--~~~~~~~C~H~fC~~C 73 (214)
.....|.+|..++... .-.....|.|.+|..|
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 3467899999998431 1223679999999999
No 103
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=75.55 E-value=1.5 Score=27.83 Aligned_cols=37 Identities=24% Similarity=0.596 Sum_probs=25.2
Q ss_pred CCCcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCC
Q 045388 130 SQGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYV 172 (214)
Q Consensus 130 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 172 (214)
.....|| .|+......... ..+.|+.|+..|-..-..
T Consensus 25 ~~~y~Cp--~CG~~~v~r~at----GiW~C~~Cg~~~aggay~ 61 (83)
T 1vq8_Z 25 NEDHACP--NCGEDRVDRQGT----GIWQCSYCDYKFTGGSYK 61 (83)
T ss_dssp HSCEECS--SSCCEEEEEEET----TEEEETTTCCEEECCSSS
T ss_pred cccCcCC--CCCCcceeccCC----CeEECCCCCCEecCCEec
Confidence 4566899 999866655442 577888888876554433
No 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=74.36 E-value=1.5 Score=25.88 Aligned_cols=29 Identities=24% Similarity=0.731 Sum_probs=23.4
Q ss_pred ccccccccccccccccccCCCCccccHHH
Q 045388 45 SSCEICRERRENDQMFKIESCIHSFCSDC 73 (214)
Q Consensus 45 ~~C~iC~~~~~~~~~~~~~~C~H~fC~~C 73 (214)
..|-.|...++....+....|++.||.+|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC 44 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC 44 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH
T ss_pred CcccccCcccCCCccEECCccCcCcccch
Confidence 35999988886555466789999999999
No 105
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=73.66 E-value=1.9 Score=28.17 Aligned_cols=18 Identities=17% Similarity=0.661 Sum_probs=14.8
Q ss_pred cccHHHHHHHHHHHhhCC
Q 045388 68 SFCSDCINKHVATKIQGG 85 (214)
Q Consensus 68 ~fC~~Cl~~~~~~~i~~~ 85 (214)
-||++||.+|+...-.+.
T Consensus 42 GFCRNCLskWy~~aA~e~ 59 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEAS 59 (105)
T ss_dssp SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 499999999998876543
No 106
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=72.67 E-value=1.8 Score=28.13 Aligned_cols=17 Identities=24% Similarity=0.714 Sum_probs=14.2
Q ss_pred cccHHHHHHHHHHHhhC
Q 045388 68 SFCSDCINKHVATKIQG 84 (214)
Q Consensus 68 ~fC~~Cl~~~~~~~i~~ 84 (214)
-||++||.+|+...-.+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999876653
No 107
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=72.66 E-value=1.3 Score=25.72 Aligned_cols=29 Identities=17% Similarity=0.521 Sum_probs=19.1
Q ss_pred CcccCccCCCceeeecCCCCCCcCcccCCCCChhh
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
...|| .|+..++..... .++.|..|+..+
T Consensus 18 ~~fCP--kCG~~~~ma~~~----dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCP--RCGPGVFLAEHA----DRYSCGRCGYTE 46 (55)
T ss_dssp SCCCT--TTTTTCCCEECS----SEEECTTTCCCE
T ss_pred cccCc--CCCCceeEeccC----CEEECCCCCCEE
Confidence 45899 898755543332 577888887753
No 108
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=70.12 E-value=1.8 Score=30.75 Aligned_cols=32 Identities=22% Similarity=0.487 Sum_probs=22.9
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhcc
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCA 168 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (214)
..||++.|+..++-.... .+..|..|+..+++
T Consensus 119 ~~c~~~~cg~g~fma~h~----~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHK----DRLYCGKCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEECS----SCEEESSSSSCCEE
T ss_pred CcCCCccCCCceEecccC----CCcccCCCceEEEe
Confidence 479988899755444432 67789999987765
No 109
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=69.96 E-value=1.7 Score=29.73 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCcccCccCCCceeeecCCCCCCcCcccCCCCChhhc
Q 045388 131 QGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFC 167 (214)
Q Consensus 131 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C 167 (214)
...+|| .|+.++....+.......+.|+.|++..=
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCeee
Confidence 457899 99999887653222346788999987553
No 110
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=66.42 E-value=4.7 Score=25.03 Aligned_cols=36 Identities=22% Similarity=0.699 Sum_probs=27.1
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHH-HH
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINK-HV 78 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~-~~ 78 (214)
..+.|.+|-...+.......+.|.-+||..|++. |.
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~ 65 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 65 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcC
Confidence 4588999986542344445789999999999996 53
No 111
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=65.97 E-value=2.5 Score=26.50 Aligned_cols=27 Identities=22% Similarity=0.557 Sum_probs=16.4
Q ss_pred CcccCccCCCceeeecCCCCCCcCcccCCCCCh
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSESECPYCHR 164 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~ 164 (214)
.++|. +|+......... .-.+|+.|+.
T Consensus 37 ~I~Cn--DC~~~s~v~~h~----lg~kC~~C~S 63 (79)
T 2k2d_A 37 DILCN--DCNGRSTVQFHI----LGMKCKICES 63 (79)
T ss_dssp EEEES--SSCCEEEEECCT----TCCCCTTTSC
T ss_pred EEECC--CCCCCccCCcee----ecccCcCCCC
Confidence 35787 998877665431 2236777764
No 112
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.57 E-value=20 Score=27.52 Aligned_cols=20 Identities=5% Similarity=0.067 Sum_probs=14.8
Q ss_pred HHhhcCCHHHHHHHHHHHHH
Q 045388 105 ACKSVLSKNVLELWEKALSQ 124 (214)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~~~ 124 (214)
.+..-++++++..|++....
T Consensus 168 ~l~~~i~~~lL~~Yerir~~ 187 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRRW 187 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHh
Confidence 34556789999999887653
No 113
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.05 E-value=6.4 Score=24.15 Aligned_cols=40 Identities=28% Similarity=0.570 Sum_probs=28.7
Q ss_pred CCCCCCcccccccccccccccccccccCCCCccccHHHHHH
Q 045388 36 ASPSSPPSRSSCEICRERRENDQMFKIESCIHSFCSDCINK 76 (214)
Q Consensus 36 ~~~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 76 (214)
+.+..+.....| +|........|+....|..-|...|+.-
T Consensus 8 e~~~~d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl 47 (76)
T 1wem_A 8 ECEVYDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGI 47 (76)
T ss_dssp CCCSCCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSC
T ss_pred CccccCCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEcc
Confidence 334444556888 8988776556777778888899999754
No 114
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=63.82 E-value=3.8 Score=25.87 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=25.8
Q ss_pred Ccccccccccccccccccc-cccCCCCccccHHHHHH
Q 045388 41 PPSRSSCEICRERRENDQM-FKIESCIHSFCSDCINK 76 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~ 76 (214)
+.+...|.+|...|....- .....||+.||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3456789999998865311 11678999999999654
No 115
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=63.47 E-value=4.3 Score=25.43 Aligned_cols=35 Identities=20% Similarity=0.692 Sum_probs=26.3
Q ss_pred CCCcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCC
Q 045388 130 SQGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYV 172 (214)
Q Consensus 130 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 172 (214)
.....|. .|+..|... .....|..||..||..|..
T Consensus 17 ~~~~~C~--~C~~~Fs~~------~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 17 DEATHCR--QCEKEFSIS------RRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCBCT--TTCCBCBTT------BCCEECTTTCCEECSGGGC
T ss_pred ccCCccc--CcCCcccCc------cccccCCCCCCEEChHHhC
Confidence 3445788 888776532 2567799999999999976
No 116
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=63.43 E-value=1.8 Score=28.03 Aligned_cols=48 Identities=23% Similarity=0.514 Sum_probs=33.1
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHH
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFD 104 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~ 104 (214)
..+.|..|+-... ..+ .-..|.+|+.|+...++ ..=+||+ |+..|+..
T Consensus 27 G~~nCKsCWf~~k--~LV--~C~dHYLCl~CLtlmL~--------~SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLV--ECNNHYLCLNCLTLLLS--------VSNRCPI--CKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--SEE--ECSSCEEEHHHHHHTCS--------SSSEETT--TTEECCCC
T ss_pred CcccChhhccccC--Cee--eecchhhHHHHHHHHHh--------hccCCcc--cCCcCCcc
Confidence 4678999976543 332 23479999999988753 2337999 88777543
No 117
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=60.46 E-value=6.5 Score=24.88 Aligned_cols=31 Identities=19% Similarity=0.544 Sum_probs=21.2
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhcc
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCA 168 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (214)
+.|| +|...-..=.. ....+.|..|+...|.
T Consensus 37 VkCp--~C~~~~~VFSh---A~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFSH---SQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECT--TTCCEEEEETT---CSSCCCCSSSCCCCSC
T ss_pred EECC--CCCCeeEEEec---CCcEEEccCCCCEeec
Confidence 5899 99976444322 1366789999888774
No 118
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=60.27 E-value=6.5 Score=25.11 Aligned_cols=37 Identities=19% Similarity=0.501 Sum_probs=26.2
Q ss_pred Ccccccccccccccccccc-cccCCCCccccHHHHHHH
Q 045388 41 PPSRSSCEICRERRENDQM-FKIESCIHSFCSDCINKH 77 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~~ 77 (214)
+.+...|.+|...|....- .....||+.||..|....
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 3456789999998864311 126789999999996543
No 119
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.77 E-value=5.2 Score=25.17 Aligned_cols=33 Identities=27% Similarity=0.620 Sum_probs=24.4
Q ss_pred CcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCC
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYV 172 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 172 (214)
...|. .|...|... ..+..|-.||..||..|-.
T Consensus 14 ~~~C~--~C~~~F~~~------~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCT--GCSATFSVL------KKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCS--SSCCCCCSS------SCCEECSSSCCEECTTTSC
T ss_pred CCcCc--CcCCccccc------hhhhhhcCCCcEEChhhcC
Confidence 34677 788766432 2567799999999999965
No 120
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=59.76 E-value=5.7 Score=24.22 Aligned_cols=8 Identities=50% Similarity=0.987 Sum_probs=3.8
Q ss_pred CCCceeee
Q 045388 139 DCSAKLVY 146 (214)
Q Consensus 139 ~C~~~~~~ 146 (214)
+|+..+..
T Consensus 33 ~CG~~~e~ 40 (70)
T 1twf_L 33 ECSSKLSL 40 (70)
T ss_dssp SSCCEECC
T ss_pred CCCCccee
Confidence 55544433
No 121
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=59.69 E-value=9.2 Score=25.71 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=15.2
Q ss_pred CcccCccCCCceeeecCCCCCCcCcc-cCCCCCh
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSES-ECPYCHR 164 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~-~C~~C~~ 164 (214)
..+|. +|++.+..+. ... .||.|+.
T Consensus 73 ~~~C~--~CG~~~e~~~------~~~~~CP~Cgs 98 (119)
T 2kdx_A 73 ELECK--DCSHVFKPNA------LDYGVCEKCHS 98 (119)
T ss_dssp EEECS--SSSCEECSCC------STTCCCSSSSS
T ss_pred eEEcC--CCCCEEeCCC------CCCCcCccccC
Confidence 34777 8887776532 234 5777764
No 122
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=57.91 E-value=5.6 Score=25.34 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=24.5
Q ss_pred cccccccccccccccccc-cccCCCCccccHHHHHH
Q 045388 42 PSRSSCEICRERRENDQM-FKIESCIHSFCSDCINK 76 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~ 76 (214)
.....|.+|...|....- .....||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 345689999998764311 11678999999999543
No 123
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=56.99 E-value=14 Score=26.95 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=42.1
Q ss_pred cccccccccccccc----ccccCCCCccccHHHHHHHHH--HHhhC-CCcccccCCCCCCCCcCcHHHHhhcCCHHHHHH
Q 045388 45 SSCEICRERRENDQ----MFKIESCIHSFCSDCINKHVA--TKIQG-GIITPVTCPGPDCKSVLKFDACKSVLSKNVLEL 117 (214)
Q Consensus 45 ~~C~iC~~~~~~~~----~~~~~~C~H~fC~~Cl~~~~~--~~i~~-~~~~~i~CP~~~C~~~l~~~~~~~~l~~~~~~~ 117 (214)
..|+||...+..++ |+....|..-|...|..-.-. ..+.+ .......||. |...-+. ..+..|..++.+.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~-~~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPA-EWRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSC-HHHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCH-HHHHHHHHHHHHH
Confidence 56999998887765 666778998898888743221 11110 0002578998 7654433 2444444444443
Q ss_pred HHH
Q 045388 118 WEK 120 (214)
Q Consensus 118 ~~~ 120 (214)
+.+
T Consensus 80 l~~ 82 (183)
T 3lqh_A 80 LKQ 82 (183)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 124
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=56.28 E-value=12 Score=21.93 Aligned_cols=34 Identities=18% Similarity=0.600 Sum_probs=24.3
Q ss_pred cccccccccccccccccccCCCCcccc-HHHHHHH
Q 045388 44 RSSCEICRERRENDQMFKIESCIHSFC-SDCINKH 77 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~~~~~~C~H~fC-~~Cl~~~ 77 (214)
...|.||........-.....|+-.|| ..|.+.|
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 578999986221122344789999999 6999987
No 125
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=56.01 E-value=5.3 Score=28.42 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=24.3
Q ss_pred ccccccccccccccc--cccccCCCCccccHHHH
Q 045388 43 SRSSCEICRERREND--QMFKIESCIHSFCSDCI 74 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~--~~~~~~~C~H~fC~~Cl 74 (214)
....|.+|..+|..- .-.....|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 468999999986432 22336799999999994
No 126
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=55.40 E-value=4.4 Score=28.60 Aligned_cols=33 Identities=21% Similarity=0.612 Sum_probs=19.7
Q ss_pred CCcccCccCC-C------ceeeecCCCCCCcCcccCCCCChhh
Q 045388 131 QGIYCPFKDC-S------AKLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 131 ~~~~Cp~~~C-~------~~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
+.+.||+|+| . ..|...+.. ....+|..|++.|
T Consensus 104 gvl~C~Np~CITn~E~v~s~F~v~~~~---~~~lrC~YCe~~~ 143 (149)
T 2yww_A 104 GTLKCTNPNCITNKEKVRGKFKIESKN---PLKIRCYYCEKFL 143 (149)
T ss_dssp SSSCCSCTTSGGGTSCCCCEEEEEEET---TEEEEETTTCCBC
T ss_pred CeEEcCCCCCCcCCcccccEEEEEeCC---CCEEEeeCCCcCh
Confidence 3457999999 2 233332211 2457898888764
No 127
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=54.53 E-value=4.1 Score=28.00 Aligned_cols=29 Identities=28% Similarity=0.702 Sum_probs=21.3
Q ss_pred CCcccCccCCCceeeecCCCCCCcCcccCCCCChhh
Q 045388 131 QGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 131 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
..-.|| .|+.-+.+.++ ..+.||.|+.++
T Consensus 26 ~lP~CP--~C~seytYeDg-----~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCP--QCNSEYTYEDG-----ALLVCPECAHEW 54 (138)
T ss_dssp CSCCCT--TTCCCCCEECS-----SSEEETTTTEEE
T ss_pred cCCCCC--CCCCcceEecC-----CeEECCcccccc
Confidence 345788 99988888776 556788777765
No 128
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.27 E-value=4.9 Score=27.50 Aligned_cols=32 Identities=25% Similarity=0.739 Sum_probs=24.4
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCC
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYV 172 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 172 (214)
..|. .|+..|... .....|..||..||..|..
T Consensus 70 ~~C~--~C~~~Fs~~------~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 70 QNCM--ACGKGFSVT------VRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CBCT--TTCCBCCSS------SCCEECTTTCCEECGGGSC
T ss_pred CCCc--CcCCccccc------cccccCCCCCeEEChHHhC
Confidence 3687 888766532 2567799999999999976
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=53.64 E-value=8.5 Score=29.55 Aligned_cols=49 Identities=4% Similarity=-0.134 Sum_probs=29.7
Q ss_pred CCcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCcccee
Q 045388 131 QGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIER 204 (214)
Q Consensus 131 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek 204 (214)
..+.|| -|...+... +.- .||+.||..|-. .+..... ..||.|+..+..
T Consensus 207 ~~~~c~--i~~~~~~dP---------v~~-~~gh~f~~~~i~------------~~~~~~~-~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGK--ISFELMREP---------CIT-PSGITYDRKDIE------------EHLQRVG-HFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCT--TTCSBCSSE---------EEC-SSCCEEETTHHH------------HHHHHTC-SSCTTTCCCCCG
T ss_pred cccCCc--CcCCHhcCC---------eEC-CCCCEECHHHHH------------HHHHHCC-CCCcCCCCCCch
Confidence 345787 666555321 112 489999999943 3333322 339999998753
No 130
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=53.49 E-value=8 Score=24.27 Aligned_cols=33 Identities=33% Similarity=0.882 Sum_probs=19.0
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCCh-----hhccccCCC
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHR-----LFCAHCYVP 173 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~-----~~C~~C~~~ 173 (214)
..|| .|...+..+.. ...|..|+. .||..|..+
T Consensus 3 ~~CP--~C~~~l~~~~~------~~~C~~C~~~~~~~afCPeCgq~ 40 (81)
T 2jrp_A 3 ITCP--VCHHALERNGD------TAHCETCAKDFSLQALCPDCRQP 40 (81)
T ss_dssp CCCS--SSCSCCEECSS------EEECTTTCCEEEEEEECSSSCSC
T ss_pred CCCC--CCCCccccCCC------ceECccccccCCCcccCcchhhH
Confidence 4577 88877766432 344666652 355555554
No 131
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.19 E-value=7.9 Score=23.06 Aligned_cols=24 Identities=25% Similarity=0.656 Sum_probs=11.3
Q ss_pred ccCccCCCceeeecCCCCCCcCcccCCCCCh
Q 045388 134 YCPFKDCSAKLVYENDGEDVLSESECPYCHR 164 (214)
Q Consensus 134 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~ 164 (214)
.|. +|+.-+..+.. ..++|+.||.
T Consensus 23 ~C~--~Cg~~~~l~~~-----~~iRC~~CG~ 46 (63)
T 3h0g_L 23 LCA--DCGARNTIQAK-----EVIRCRECGH 46 (63)
T ss_dssp BCS--SSCCBCCCCSS-----SCCCCSSSCC
T ss_pred ECC--CCCCeeecCCC-----CceECCCCCc
Confidence 455 55554443322 3445555554
No 132
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.22 E-value=7.6 Score=29.41 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=24.4
Q ss_pred cccccccccccccccc-cccCCCCccccHHHHHHH
Q 045388 44 RSSCEICRERRENDQM-FKIESCIHSFCSDCINKH 77 (214)
Q Consensus 44 ~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~~ 77 (214)
...|.+|...|....- .....||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4589999988864311 126789999999996543
No 133
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.99 E-value=5.8 Score=26.97 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCcccccccccccccccccc-cccCCCCccccHHHHHHHH
Q 045388 40 SPPSRSSCEICRERRENDQM-FKIESCIHSFCSDCINKHV 78 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~-~~~~~C~H~fC~~Cl~~~~ 78 (214)
++.....|..|...|....- .....||..||..|....+
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 34455789999998764211 1167899999999966554
No 134
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=51.04 E-value=33 Score=23.52 Aligned_cols=34 Identities=24% Similarity=0.688 Sum_probs=25.5
Q ss_pred cccccccccccccccccccccCCCCccccHHHHHHHH
Q 045388 42 PSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHV 78 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 78 (214)
.....|.+|.+. .+++....|-..||..|+...+
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~l 88 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNL 88 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHT
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCc
Confidence 345679999874 3444456899999999999864
No 135
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=49.48 E-value=19 Score=24.95 Aligned_cols=15 Identities=13% Similarity=0.434 Sum_probs=9.9
Q ss_pred CcccCccCCCceeeecC
Q 045388 132 GIYCPFKDCSAKLVYEN 148 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~ 148 (214)
..+|. +|++.+..+.
T Consensus 70 ~~~C~--~CG~~~~~~~ 84 (139)
T 3a43_A 70 VFKCR--NCNYEWKLKE 84 (139)
T ss_dssp EEEET--TTCCEEEGGG
T ss_pred cEECC--CCCCEEeccc
Confidence 34787 7877776544
No 136
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=49.36 E-value=7.7 Score=23.64 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=23.0
Q ss_pred ccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCC
Q 045388 134 YCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYV 172 (214)
Q Consensus 134 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 172 (214)
.|. .|+..|... .....|..||..||..|..
T Consensus 13 ~C~--~C~~~F~~~------~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACM--ICSKKFSLL------NRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCT--TTCCBCBTT------BCCEECTTTCCEECGGGSC
T ss_pred ccc--CCCCccCCc------cccccCCCCCEEEcccccC
Confidence 566 777655432 2567799999999999976
No 137
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.07 E-value=7 Score=23.27 Aligned_cols=32 Identities=25% Similarity=0.594 Sum_probs=23.5
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCC
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVP 173 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 173 (214)
..|..++|...- ...+.|..|+..||...+.+
T Consensus 13 ~~Cs~~~Ck~~~---------ll~f~C~~C~~~FC~~HR~~ 44 (63)
T 1x4v_A 13 NKCERAGCRQRE---------MMKLTCERCSRNFCIKHRHP 44 (63)
T ss_dssp CCCCSTTCCCCC---------SSCCBCSSSCCBCCHHHHST
T ss_pred CCCCccCCCCCC---------ccceECCCCCcccCcccCCc
Confidence 478877787551 13467999999999988763
No 138
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=49.06 E-value=5.6 Score=24.33 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=16.4
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhh
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
+.|| |+.+...+... ....|| ||..+
T Consensus 5 v~C~---C~~~~~~~~~~----kT~~C~-CG~~~ 30 (71)
T 1gh9_A 5 FRCD---CGRALYSREGA----KTRKCV-CGRTV 30 (71)
T ss_dssp EEET---TSCCEEEETTC----SEEEET-TTEEE
T ss_pred EECC---CCCEEEEcCCC----cEEECC-CCCee
Confidence 3564 88777666653 556677 77654
No 139
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=48.25 E-value=11 Score=26.92 Aligned_cols=33 Identities=27% Similarity=0.736 Sum_probs=21.9
Q ss_pred ccccccccccccccccccccC--CCCccccHHHHHHHH
Q 045388 43 SRSSCEICRERRENDQMFKIE--SCIHSFCSDCINKHV 78 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~ 78 (214)
....|.+|.+. .+++... .|...||.+||...+
T Consensus 78 ~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nv 112 (159)
T 3a1b_A 78 YQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLV 112 (159)
T ss_dssp SBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHT
T ss_pred CcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhc
Confidence 35567777663 2333323 688899999998876
No 140
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=48.23 E-value=5.7 Score=28.17 Aligned_cols=34 Identities=21% Similarity=0.571 Sum_probs=19.6
Q ss_pred CCcccCccCC-C------ceeeecCCCCCCcCcccCCCCChhh
Q 045388 131 QGIYCPFKDC-S------AKLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 131 ~~~~Cp~~~C-~------~~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
+.+.||+|+| . ..|...+.. .....+|..|++.|
T Consensus 104 gv~~C~Np~CITn~E~v~s~F~v~~~~--~~~~lrC~YCe~~~ 144 (153)
T 2be7_D 104 NVFPCPNSNCITHGEPVTSSFSIKKTK--GNIGLKCKYCEKTF 144 (153)
T ss_dssp SSSCCSCTTCTTSSSSCCCCEEEEEET--TEEEEEETTTCCEE
T ss_pred CeEEcCCCCCCcCCcccccEEEEeecC--CCCEEEeeCCCCEe
Confidence 4458999999 3 223332210 02457898887654
No 141
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=47.84 E-value=3 Score=19.85 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=16.6
Q ss_pred ccccCCCCCCCCcCcHHHHhhcCC
Q 045388 88 TPVTCPGPDCKSVLKFDACKSVLS 111 (214)
Q Consensus 88 ~~i~CP~~~C~~~l~~~~~~~~l~ 111 (214)
+.+.||. |+..++..++...|+
T Consensus 5 f~vqcpv--cqq~mpaahin~hld 26 (29)
T 3vhs_A 5 FQVQCPV--CQQMMPAAHINSHLD 26 (29)
T ss_dssp CEEECTT--TCCEEEGGGHHHHHH
T ss_pred eeeeChH--HHHhCcHHHHHHHHh
Confidence 5678999 998888777766543
No 142
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=47.64 E-value=5.7 Score=32.23 Aligned_cols=27 Identities=41% Similarity=0.858 Sum_probs=21.6
Q ss_pred CCChh-hccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccceec
Q 045388 161 YCHRL-FCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERT 205 (214)
Q Consensus 161 ~C~~~-~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek~ 205 (214)
.||+. ||..|...| +.||-|+..|.+.
T Consensus 312 pCgH~~fC~~C~~~~------------------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL------------------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCCEEECTTTGGGC------------------SBCTTTCCBCCEE
T ss_pred CCCChhHhHHHHhcC------------------CcCCCCCCCccCe
Confidence 47888 999997532 7899999988753
No 143
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=46.68 E-value=14 Score=22.18 Aligned_cols=31 Identities=26% Similarity=0.582 Sum_probs=20.2
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhcc
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCA 168 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (214)
+.|| +|...-..=.. ....+.|..|+...|.
T Consensus 8 VKCp--~C~niq~VFSh---A~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP--DCEHEQVIFDH---PSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECT--TTCCEEEEESS---CSSCEECSSSCCEEEE
T ss_pred EECC--CCCCceEEEec---CceEEEcccCCCEEee
Confidence 5788 99865433222 1366788888887764
No 144
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=45.74 E-value=24 Score=26.92 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=27.9
Q ss_pred CcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccce
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIE 203 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~ie 203 (214)
...|. -|..++... .+|+. |...+|..- +..+.+......||.|+....
T Consensus 180 i~~C~--iC~~iv~~g---------~~C~~--------C~~~~H~~C----~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICN--ICHSLLIQG---------QSCET--------CGIRMHLPC----VAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCT--TTCSBCSSC---------EECSS--------SCCEECHHH----HHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCc--chhhHHhCC---------cccCc--------cChHHHHHH----HHHHHHhCCCCCCCCCCCCCC
Confidence 45666 676666532 23543 555666331 233444455678999998654
No 145
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=45.50 E-value=8.7 Score=27.61 Aligned_cols=33 Identities=18% Similarity=0.498 Sum_probs=18.8
Q ss_pred CCcccCccCC-Cc-------eeeecCCCCCCcCcccCCCCChhh
Q 045388 131 QGIYCPFKDC-SA-------KLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 131 ~~~~Cp~~~C-~~-------~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
+.+.||+|+| .. .|...+. .....+|..|++.|
T Consensus 113 gvl~C~Np~CITn~~~Epvs~F~v~~~---~~~~lrC~YCe~~~ 153 (168)
T 1pg5_B 113 GILKCPNPYCITSNDVEAIPTFKTLTE---KPLKMRCEYCETII 153 (168)
T ss_dssp SSSCCSCTTBGGGTCTTSCCEEEEEET---TTTEEEETTTCCEE
T ss_pred CeEEcCCCCcccCCCCccccEEEEEcC---CCCEEEeeCCCCEe
Confidence 3457999999 31 2222121 12457888887653
No 146
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=44.73 E-value=5.3 Score=20.62 Aligned_cols=16 Identities=13% Similarity=0.273 Sum_probs=12.7
Q ss_pred cccccccccccccccc
Q 045388 43 SRSSCEICRERRENDQ 58 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~ 58 (214)
+.+.||+|+.++...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4589999999887654
No 147
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=44.70 E-value=9.2 Score=31.55 Aligned_cols=32 Identities=28% Similarity=0.735 Sum_probs=23.0
Q ss_pred CCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccceec
Q 045388 161 YCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERT 205 (214)
Q Consensus 161 ~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek~ 205 (214)
.||+.||..|... |... ....||.|+..|...
T Consensus 349 pCGH~FC~~Ci~~------------wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 349 PCGHLMCTSCLTS------------WQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp TTCCEECHHHHHH------------HHHH-TCSBCTTTCCBCCEE
T ss_pred CCCChhhHHHHHH------------HHhc-CCCCCCCCCCccCCc
Confidence 5899999999542 2221 457899999988653
No 148
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=44.48 E-value=20 Score=21.34 Aligned_cols=49 Identities=16% Similarity=0.473 Sum_probs=32.3
Q ss_pred CcccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCC
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCK 98 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~ 98 (214)
......|.+|.+. .+++....|...|...|+.--+.. +-.+. -.||. |.
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~-~P~g~---W~C~~--C~ 57 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTS-RPGTG---LRCRS--CS 57 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCC-CCSSS---CCCTT--TT
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCc-CCCCC---EECcc--cc
Confidence 3345679999863 445556789999999998654432 33333 45777 64
No 149
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=44.40 E-value=17 Score=22.06 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=27.0
Q ss_pred CcccccccccccccccccccccCCCCccccHHHHHH
Q 045388 41 PPSRSSCEICRERRENDQMFKIESCIHSFCSDCINK 76 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~ 76 (214)
......|.+|........|+..-.|...|...|+.-
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCC
Confidence 345677999988765555666778888899999753
No 150
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=44.26 E-value=22 Score=21.83 Aligned_cols=38 Identities=26% Similarity=0.571 Sum_probs=26.9
Q ss_pred CCCCCcccccccccccccccccccccC--CCCccccHHHHH
Q 045388 37 SPSSPPSRSSCEICRERRENDQMFKIE--SCIHSFCSDCIN 75 (214)
Q Consensus 37 ~~~~~~~~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~ 75 (214)
.+........| ||-.......|+..- .|...|...|+.
T Consensus 9 d~~~~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg 48 (78)
T 1wew_A 9 DPFQPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI 48 (78)
T ss_dssp CSSSCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS
T ss_pred cccCCCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEc
Confidence 33444567889 898875556666655 788889999974
No 151
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=43.94 E-value=11 Score=22.84 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=18.9
Q ss_pred CCcccCccCCCceeeecCCCCCCcCcccCCCCChhhc
Q 045388 131 QGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFC 167 (214)
Q Consensus 131 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C 167 (214)
+..-|| .|.+.+..+... ....|+.|+..|=
T Consensus 7 ~iL~CP--~ck~~L~~~~~~----~~LiC~~cg~~YP 37 (70)
T 2js4_A 7 DILVCP--VCKGRLEFQRAQ----AELVCNADRLAFP 37 (70)
T ss_dssp CCCBCT--TTCCBEEEETTT----TEEEETTTTEEEE
T ss_pred hheECC--CCCCcCEEeCCC----CEEEcCCCCceec
Confidence 345688 888777665432 4456776666553
No 152
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=43.42 E-value=14 Score=23.43 Aligned_cols=33 Identities=30% Similarity=0.772 Sum_probs=24.9
Q ss_pred CcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCC
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVP 173 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 173 (214)
...|..++|...-. ..+.|..|+..||...+.+
T Consensus 25 ~~~C~~~~Ck~~~~---------l~f~C~~C~~~FC~~HR~~ 57 (86)
T 1wfe_A 25 SYSCSFKGCTDVEL---------VAVICPYCEKNFCLRHRHQ 57 (86)
T ss_dssp CEECCSTTCCCEES---------SCEECTTTCCEECGGGCST
T ss_pred CCCCCCcCCCCCCc---------cceECCCCCcccccccCCc
Confidence 34688778886622 4467999999999998764
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.30 E-value=10 Score=28.47 Aligned_cols=32 Identities=22% Similarity=0.819 Sum_probs=22.7
Q ss_pred ccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCC
Q 045388 134 YCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVP 173 (214)
Q Consensus 134 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 173 (214)
.|+ .|...|... ..+..|..||..||..|...
T Consensus 163 ~C~--~C~~~F~~~------~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 163 VCH--RCRVEFTFT------NRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp BCT--TTCCBCCSS------SCCEECTTTCCEECSTTSCE
T ss_pred ccC--CCCCccCCc------ccccccCCcCCEEChHHhCC
Confidence 465 666555422 25678999999999999763
No 154
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.16 E-value=18 Score=21.41 Aligned_cols=31 Identities=16% Similarity=0.463 Sum_probs=20.4
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhcc
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCA 168 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (214)
+.|| +|...-..=.. ....+.|..|+...|.
T Consensus 16 VkCp--~C~~~q~VFSh---a~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVFSH---PATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEESS---CSSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEEec---CCeEEEccCcCCEEec
Confidence 4799 99975443222 1366789889887764
No 155
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=41.93 E-value=10 Score=23.01 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=18.0
Q ss_pred CcccCccCCCceeeecCCCCCCcCcccCCCCChhhc
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFC 167 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C 167 (214)
..-|| .|.+.+...... ....|+.|+..|=
T Consensus 8 iL~CP--~ck~~L~~~~~~----~~LiC~~cg~~YP 37 (69)
T 2pk7_A 8 ILACP--ICKGPLKLSADK----TELISKGAGLAYP 37 (69)
T ss_dssp TCCCT--TTCCCCEECTTS----SEEEETTTTEEEE
T ss_pred heeCC--CCCCcCeEeCCC----CEEEcCCCCcEec
Confidence 34677 777776665432 4456766666553
No 156
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=41.29 E-value=17 Score=21.88 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=8.2
Q ss_pred CccCCCCCccceecCC
Q 045388 192 LRKCPNCKYHIERTGG 207 (214)
Q Consensus 192 ~k~CP~C~~~iek~~G 207 (214)
.-.||.|+...--.+|
T Consensus 26 ~LiC~~cg~~YPI~dG 41 (68)
T 2jr6_A 26 ELWSRQAKLAYPIKDG 41 (68)
T ss_dssp EEEETTTTEEEEEETT
T ss_pred EEEcCCCCcEecCCCC
Confidence 3456666664443333
No 157
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=40.46 E-value=17 Score=20.12 Aligned_cols=45 Identities=24% Similarity=0.723 Sum_probs=28.8
Q ss_pred cccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCC
Q 045388 46 SCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPG 94 (214)
Q Consensus 46 ~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 94 (214)
.|.+|...-...+++....|...|...|+..-+. .+..+. -.||.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~-~~P~g~---W~C~~ 46 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-EVPDGE---WQCPA 46 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC-SCCSSC---CSCTT
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcC-CCCCCc---EECcC
Confidence 5888887654455666678888999999864332 222333 45766
No 158
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=40.32 E-value=10 Score=22.93 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=17.5
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhc
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFC 167 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C 167 (214)
.-|| .|.+.+...... ....|+.|+..|=
T Consensus 9 L~CP--~ck~~L~~~~~~----~~LiC~~cg~~YP 37 (68)
T 2hf1_A 9 LVCP--LCKGPLVFDKSK----DELICKGDRLAFP 37 (68)
T ss_dssp CBCT--TTCCBCEEETTT----TEEEETTTTEEEE
T ss_pred eECC--CCCCcCeEeCCC----CEEEcCCCCcEec
Confidence 4677 777766665432 4456766666553
No 159
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=40.20 E-value=3.5 Score=31.51 Aligned_cols=38 Identities=18% Similarity=0.475 Sum_probs=21.0
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCC
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYV 172 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 172 (214)
.+|| +|+..-...-.......-+.|+.|+..|=+.=+.
T Consensus 35 ~yCP--nCG~~~l~~f~nN~PVaDF~C~~C~EeyELKSk~ 72 (257)
T 4esj_A 35 SYCP--NCGNNPLNHFENNRPVADFYCNHCSEEFELKSKK 72 (257)
T ss_dssp CCCT--TTCCSSCEEC----CCCEEECTTTCCEEEEEEEE
T ss_pred CcCC--CCCChhhhhccCCCcccccccCCcchhheecccc
Confidence 4799 9997432221111234557788887766555444
No 160
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=39.89 E-value=24 Score=18.40 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=19.2
Q ss_pred cCcccCCCCChhhccccCC-CCCCC
Q 045388 154 LSESECPYCHRLFCAHCYV-PWHPG 177 (214)
Q Consensus 154 ~~~~~C~~C~~~~C~~C~~-~~h~~ 177 (214)
...+.|..++..+|..|.. ..|.+
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~ 36 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHAS 36 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCC
Confidence 3667899999999999987 55654
No 161
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=39.51 E-value=20 Score=22.42 Aligned_cols=30 Identities=20% Similarity=0.556 Sum_probs=20.4
Q ss_pred ccCccCCCceeeecCCCCCCcCcccCCCCChhhcc
Q 045388 134 YCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCA 168 (214)
Q Consensus 134 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (214)
.|| +|...-..=.. ....+.|..|+...|.
T Consensus 34 kCp--~C~n~q~VFSh---A~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 34 KCA--QCQNIQMIFSN---AQSTIICEKCSAILCK 63 (81)
T ss_dssp ECS--SSCCEEEEETT---CSSCEECSSSCCEEEE
T ss_pred ECC--CCCCeeEEEec---CccEEEccCCCCEEee
Confidence 799 99976444322 1367789889887764
No 162
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=39.07 E-value=10 Score=30.27 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=8.3
Q ss_pred CccCCCCCccce
Q 045388 192 LRKCPNCKYHIE 203 (214)
Q Consensus 192 ~k~CP~C~~~ie 203 (214)
+-.|.+|+.++.
T Consensus 253 ~e~C~~C~~YlK 264 (309)
T 2fiy_A 253 AETCPSCQGYLK 264 (309)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEcccccchHh
Confidence 456888887663
No 163
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=39.06 E-value=7.3 Score=28.02 Aligned_cols=77 Identities=17% Similarity=0.370 Sum_probs=41.9
Q ss_pred Ccccccccccccccc-cccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcCcHHHHhhcCCHHHHHHHH
Q 045388 41 PPSRSSCEICRERRE-NDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVLKFDACKSVLSKNVLELWE 119 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l~~~~~~~~l~~~~~~~~~ 119 (214)
......| +|..... ...|+....|...|...|+.-..... ... ....||. |...-.......-|+++.++...
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~--~~~-~~~~C~~--C~~~~~~~~~~~~l~~~~~~~l~ 78 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEA--ELI-DEYVCPQ--CQSTEDAMTVLTPLTEKDYEGLK 78 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHH--TTC-SSCCCHH--HHHHHHHHTTTSBCCHHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhc--cCc-cCeecCC--CcchhccccccccCCHHHHHHHH
Confidence 3456889 9988754 34466677899899999985322211 111 3567887 65321111112335555555554
Q ss_pred HHHH
Q 045388 120 KALS 123 (214)
Q Consensus 120 ~~~~ 123 (214)
..+.
T Consensus 79 ~il~ 82 (174)
T 2ri7_A 79 RVLR 82 (174)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 164
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=38.99 E-value=32 Score=22.65 Aligned_cols=48 Identities=13% Similarity=0.375 Sum_probs=32.8
Q ss_pred ccccccccccc------ccccccccCCCCccccHHHHHH--HHHHHhhCCCcccccCCC
Q 045388 44 RSSCEICRERR------ENDQMFKIESCIHSFCSDCINK--HVATKIQGGIITPVTCPG 94 (214)
Q Consensus 44 ~~~C~iC~~~~------~~~~~~~~~~C~H~fC~~Cl~~--~~~~~i~~~~~~~i~CP~ 94 (214)
...|.+|+..- ...+++....|+..|...|+.. -+...+..+. -.||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~---W~C~~ 60 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALR---WQCIE 60 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSC---CCCTT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccc---ccccc
Confidence 56799998763 2235566778999999999952 3445566655 45776
No 165
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=38.38 E-value=4.7 Score=29.28 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=16.3
Q ss_pred HHHHHHHhCCCccCCCCCccce
Q 045388 182 MMRELVKKKQLRKCPNCKYHIE 203 (214)
Q Consensus 182 ~~~~~~~~~~~k~CP~C~~~ie 203 (214)
.+.++..+...|+|++||+.-.
T Consensus 151 ~~~~f~~~~e~rtc~~CG~~~~ 172 (176)
T 1zvf_A 151 AILDFENDVEKRTCFHCKTLNY 172 (176)
T ss_dssp HHHHHHTCHHHHBCTTTCCBCC
T ss_pred HHHHHhcChhhccCCCCCCcCC
Confidence 4555666677899999998643
No 166
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=37.58 E-value=23 Score=22.19 Aligned_cols=31 Identities=19% Similarity=0.626 Sum_probs=19.9
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhcc
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCA 168 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (214)
+.|| +|...-..=.. ....+.|..|+...|.
T Consensus 35 VkCp--~C~~~q~VFSh---a~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCP--GCLNITTVFSH---AQTAVTCESCSTILCT 65 (82)
T ss_dssp EECT--TSCSCEEEESB---CSSCCCCSSSCCCCEE
T ss_pred EECC--CCCCeeEEEec---CCeEEEccccCCEEec
Confidence 3799 99865433222 1266778888887763
No 167
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.06 E-value=13 Score=27.99 Aligned_cols=19 Identities=26% Similarity=0.905 Sum_probs=16.4
Q ss_pred CcccCCCCChhhccccCCC
Q 045388 155 SESECPYCHRLFCAHCYVP 173 (214)
Q Consensus 155 ~~~~C~~C~~~~C~~C~~~ 173 (214)
....|..||..||..|...
T Consensus 179 RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 179 RKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCEECTTTCCEECTTTCCE
T ss_pred cccccCCCcCEeChhhcCC
Confidence 5678999999999999773
No 168
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=36.94 E-value=19 Score=20.85 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=15.4
Q ss_pred cccCccCCCc-eeeecCCCCCCcCcccCCCCChhh
Q 045388 133 IYCPFKDCSA-KLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 133 ~~Cp~~~C~~-~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
..|| .|+. -++.+.. ...+.|..||.++
T Consensus 12 ~~Cp--~C~~~~lv~D~~----~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCP--NHPDAILVEDYR----AGDMICPECGLVV 40 (58)
T ss_dssp CSBT--TBSSSCCEECSS----SCCEECTTTCCEE
T ss_pred ccCc--CCCCCceeEeCC----CCeEEeCCCCCEE
Confidence 3688 8875 3443322 1445677776543
No 169
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=36.49 E-value=10 Score=17.48 Aligned_cols=13 Identities=46% Similarity=1.352 Sum_probs=10.1
Q ss_pred hhccccCCCCCCC
Q 045388 165 LFCAHCYVPWHPG 177 (214)
Q Consensus 165 ~~C~~C~~~~h~~ 177 (214)
.||..|.++|--|
T Consensus 6 ffcetcskpwlvg 18 (26)
T 1loi_A 6 FFCETCSKPWLVG 18 (26)
T ss_dssp HHHHTSSCTTGGG
T ss_pred HHHHhcCCchhhh
Confidence 5788999988654
No 170
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=36.45 E-value=57 Score=20.55 Aligned_cols=34 Identities=18% Similarity=0.666 Sum_probs=26.6
Q ss_pred ccccccccccccccccccccCCCCccccHHHHHHH
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFCSDCINKH 77 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 77 (214)
....|.||-.. +.+.++...-|+-.|...||+..
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccc-cccceeccccccccccHhhcccc
Confidence 45789998643 45566667889999999999985
No 171
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.23 E-value=22 Score=29.22 Aligned_cols=33 Identities=24% Similarity=0.753 Sum_probs=23.3
Q ss_pred ccccccccccccccccccccC--CCCccccHHHHHHHH
Q 045388 43 SRSSCEICRERRENDQMFKIE--SCIHSFCSDCINKHV 78 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~ 78 (214)
....|.+|.+. .+++... .|...||.+|+...+
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhc
Confidence 45667777763 2333334 888999999999987
No 172
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.47 E-value=14 Score=22.74 Aligned_cols=56 Identities=23% Similarity=0.552 Sum_probs=36.2
Q ss_pred CCcccccccccccccc-cccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCCCcC
Q 045388 40 SPPSRSSCEICRERRE-NDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCKSVL 101 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~l 101 (214)
.+.....| +|...+. ...|+....|..-|...|+.-...... .. ....||. |....
T Consensus 8 ~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~--~~-~~~~C~~--C~~~~ 64 (79)
T 1wep_A 8 MALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV--DI-DIYHCPD--CEAVF 64 (79)
T ss_dssp CCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHT--TC-SBBCCTT--TTTTS
T ss_pred ccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccccc--CC-CeEECCC--ccccc
Confidence 34456778 8988764 455666778888899999864332221 11 3678988 76543
No 173
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=35.27 E-value=4.7 Score=29.31 Aligned_cols=22 Identities=18% Similarity=0.566 Sum_probs=16.0
Q ss_pred HHHHHHHhCCCccCCCCCccce
Q 045388 182 MMRELVKKKQLRKCPNCKYHIE 203 (214)
Q Consensus 182 ~~~~~~~~~~~k~CP~C~~~ie 203 (214)
.+.++..+...|+|++||+.-.
T Consensus 149 ~~~~f~~~~~~rtc~~Cg~~~~ 170 (174)
T 1yfu_A 149 LFESFYASEDKRRCPHCGQVHP 170 (174)
T ss_dssp HHHHHHTCHHHHBCTTTCCBCC
T ss_pred HHHHHhcCHhhccCCCCCCcCC
Confidence 3455666677899999998643
No 174
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=34.60 E-value=13 Score=21.74 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=23.9
Q ss_pred cccccccccccccc-cccccccCCCCccccHHHHH
Q 045388 42 PSRSSCEICRERRE-NDQMFKIESCIHSFCSDCIN 75 (214)
Q Consensus 42 ~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~ 75 (214)
.+...|++|...+. ...|+....|..-|...|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 34578999988764 34566666788778888864
No 175
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=34.25 E-value=25 Score=19.38 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=16.3
Q ss_pred cccCccCCCceeeecCCCC----CCcCcccCCCCCh
Q 045388 133 IYCPFKDCSAKLVYENDGE----DVLSESECPYCHR 164 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~----~~~~~~~C~~C~~ 164 (214)
..|+ .|++++-...+.. +......||.|+.
T Consensus 5 y~C~--vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 5 YVCN--VCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp EEET--TTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred EECC--CCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 3577 7887765433210 1223457887774
No 176
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.93 E-value=18 Score=21.74 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=17.2
Q ss_pred CcccCccCCCceeeecCCCCCCcCcccCCCCChhh
Q 045388 132 GIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
..-|| .|.+.+..+... ....|+.|+..|
T Consensus 10 iL~CP--~ck~~L~~~~~~----g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACP--KDKGPLRYLESE----QLLVNERLNLAY 38 (67)
T ss_dssp CCBCT--TTCCBCEEETTT----TEEEETTTTEEE
T ss_pred HhCCC--CCCCcCeEeCCC----CEEEcCCCCccc
Confidence 44677 777766665432 345566666554
No 177
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=33.88 E-value=27 Score=20.40 Aligned_cols=26 Identities=35% Similarity=0.721 Sum_probs=16.1
Q ss_pred cCCCCcccCccCCCceeeecCCCCCCcCcccCCCCCh
Q 045388 128 DASQGIYCPFKDCSAKLVYENDGEDVLSESECPYCHR 164 (214)
Q Consensus 128 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~ 164 (214)
..++...|| .|+.... +...|+.||.
T Consensus 26 ~~p~l~~c~--~cG~~~~---------pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECP--QCHGKKL---------SHHICPNCGY 51 (60)
T ss_dssp CCCCCEECT--TTCCEEC---------TTBCCTTTCB
T ss_pred cCCCceECC--CCCCEeC---------CceEcCCCCc
Confidence 345667787 7776632 3445777774
No 178
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=33.72 E-value=14 Score=23.40 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=20.4
Q ss_pred CCCcccCccCCCce--eeecCCCCCCcCcccCCCCChhh
Q 045388 130 SQGIYCPFKDCSAK--LVYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 130 ~~~~~Cp~~~C~~~--~~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
+..|.|| .|+.. +...-+.......+.|..|+..|
T Consensus 21 ~t~F~CP--fCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 21 ETQFTCP--FCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp SSCCCCT--TTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred CCeEcCC--CCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 3567899 88854 33322211234567787777766
No 179
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=33.38 E-value=27 Score=21.51 Aligned_cols=32 Identities=19% Similarity=0.551 Sum_probs=23.4
Q ss_pred cccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCC
Q 045388 133 IYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVP 173 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 173 (214)
..|..++|... + ..-+.|..|+..||...+.+
T Consensus 15 ~~Cs~~~C~~~----d-----flpf~C~~C~~~FC~~HR~~ 46 (75)
T 1wys_A 15 QHCQVQHCRQR----D-----FLPFVCDGCSGIFCLEHRSK 46 (75)
T ss_dssp CCCSCTTTCCC----S-----CCCEECTTTCCEECSTTCSS
T ss_pred CCcCcccCCCc----c-----ceeeECcccCcCcCcccCCc
Confidence 46776677755 1 14577999999999998764
No 180
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=33.37 E-value=25 Score=20.61 Aligned_cols=25 Identities=28% Similarity=0.692 Sum_probs=15.6
Q ss_pred CCCCcccCccCCCceeeecCCCCCCcCcccCCCCCh
Q 045388 129 ASQGIYCPFKDCSAKLVYENDGEDVLSESECPYCHR 164 (214)
Q Consensus 129 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~ 164 (214)
.++...|| +|+.... +...|+.||.
T Consensus 27 ~p~l~~c~--~cGe~~~---------~H~vc~~CG~ 51 (60)
T 3v2d_5 27 PPTLVPCP--ECKAMKP---------PHTVCPECGY 51 (60)
T ss_dssp CCCCEECT--TTCCEEC---------TTSCCTTTCE
T ss_pred CCceeECC--CCCCeec---------ceEEcCCCCc
Confidence 35667788 7776543 3344777774
No 181
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=32.93 E-value=38 Score=16.98 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=11.2
Q ss_pred cccCccCCCceeeecC
Q 045388 133 IYCPFKDCSAKLVYEN 148 (214)
Q Consensus 133 ~~Cp~~~C~~~~~~~~ 148 (214)
+.||+|+|...-....
T Consensus 2 ~~CPtpGC~g~GH~~g 17 (31)
T 2jx1_A 2 LKCPTPGCDGSGHITG 17 (31)
T ss_dssp CSCSCTTCCSSCCSSS
T ss_pred CcCCCCCccccceecc
Confidence 3599999997654443
No 182
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=31.95 E-value=30 Score=20.50 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=24.4
Q ss_pred cccccccccccccccc-cccccC-CCCccccHHHHHHH
Q 045388 42 PSRSSCEICRERREND-QMFKIE-SCIHSFCSDCINKH 77 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~-~~~~~~-~C~H~fC~~Cl~~~ 77 (214)
.....|++|...+... .++... .|.--|...|+.-.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt 43 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMT 43 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCC
Confidence 3467899999987544 444455 78888999997543
No 183
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=31.71 E-value=24 Score=30.02 Aligned_cols=35 Identities=29% Similarity=0.762 Sum_probs=22.8
Q ss_pred CCcccccccccccccc-cccccccCCCCccccHHHHH
Q 045388 40 SPPSRSSCEICRERRE-NDQMFKIESCIHSFCSDCIN 75 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~-~~~~~~~~~C~H~fC~~Cl~ 75 (214)
.+.....| +|..... ...|+....|..-|...|+.
T Consensus 33 ~~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg 68 (488)
T 3kv5_D 33 PPPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVG 68 (488)
T ss_dssp CCCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHT
T ss_pred CCCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecC
Confidence 34456677 7877653 34566666787777888873
No 184
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=31.22 E-value=25 Score=25.42 Aligned_cols=19 Identities=37% Similarity=0.781 Sum_probs=9.5
Q ss_pred cCCCCCccceecCCCCCeecC
Q 045388 194 KCPNCKYHIERTGGCLHMTCL 214 (214)
Q Consensus 194 ~CP~C~~~iek~~GCnhm~C~ 214 (214)
.|++|+....+.+ ++|.|+
T Consensus 142 ~~~~~g~~m~~~~--~~~~cp 160 (179)
T 3m7n_A 142 LCSNCKTEMVREG--DILKCP 160 (179)
T ss_dssp BCTTTCCBCEECS--SSEECS
T ss_pred cccccCCceEECC--CEEECC
Confidence 4555555554433 555553
No 185
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=30.79 E-value=15 Score=19.55 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=8.9
Q ss_pred CCccCCCCCccce
Q 045388 191 QLRKCPNCKYHIE 203 (214)
Q Consensus 191 ~~k~CP~C~~~ie 203 (214)
....||+|+..|.
T Consensus 8 ~~~~C~~C~~~i~ 20 (39)
T 2i5o_A 8 DQVPCEKCGSLVP 20 (39)
T ss_dssp CEEECTTTCCEEE
T ss_pred CCcccccccCcCC
Confidence 3456888888764
No 186
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=30.71 E-value=65 Score=18.46 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.5
Q ss_pred ccccCCCCCCCCcCc
Q 045388 88 TPVTCPGPDCKSVLK 102 (214)
Q Consensus 88 ~~i~CP~~~C~~~l~ 102 (214)
.|++|+. |+.++.
T Consensus 2 iPVRCFT--CGkvi~ 14 (55)
T 1ef4_A 2 IPVRCLS--CGKPVS 14 (55)
T ss_dssp CSSSCSC--TTSCCH
T ss_pred CCeecCC--CCCChh
Confidence 5889988 998873
No 187
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.30 E-value=86 Score=20.57 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=13.9
Q ss_pred ccCccCCCceeeecCCCCCCcCcccCCCCChh
Q 045388 134 YCPFKDCSAKLVYENDGEDVLSESECPYCHRL 165 (214)
Q Consensus 134 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 165 (214)
.|- +|++.| .+.. ....+||.|+..
T Consensus 69 ~C~--~CG~~F-~~~~----~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCR--KCGFVF-KAEI----NIPSRCPKCKSE 93 (105)
T ss_dssp BBT--TTCCBC-CCCS----SCCSSCSSSCCC
T ss_pred Chh--hCcCee-cccC----CCCCCCcCCCCC
Confidence 577 888776 2221 134567766643
No 188
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=30.02 E-value=56 Score=23.78 Aligned_cols=11 Identities=36% Similarity=0.633 Sum_probs=7.8
Q ss_pred CcccCccCCCc
Q 045388 132 GIYCPFKDCSA 142 (214)
Q Consensus 132 ~~~Cp~~~C~~ 142 (214)
.-.||.-.|.+
T Consensus 106 FG~CPRv~C~~ 116 (182)
T 1qf8_A 106 FGYCPRVYCEN 116 (182)
T ss_dssp TCBCCBGGGTT
T ss_pred CCCCCccccCC
Confidence 33799888864
No 189
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.83 E-value=37 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCcccccccccccccc
Q 045388 6 SSAAFATLAEELEIQEALMASTITSQMAKSASPSSPPSRSSCEICRERRE 55 (214)
Q Consensus 6 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~ 55 (214)
+...++.+.++....++++..+...-.............+.|.+|.-.+.
T Consensus 117 ~~~~f~~~~~~E~ehe~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~ 166 (191)
T 1lko_A 117 IARVFASIAVAEEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYVHE 166 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCceEEECCCCCEee
Confidence 44666777777666666666554422111001111223677888876654
No 190
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=29.52 E-value=10 Score=22.95 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=11.0
Q ss_pred CCCccCCCCCccce
Q 045388 190 KQLRKCPNCKYHIE 203 (214)
Q Consensus 190 ~~~k~CP~C~~~ie 203 (214)
...+.||.|+..+.
T Consensus 7 ~~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 7 TITVNCPTCGKTVV 20 (68)
T ss_dssp CCEEECTTTCCEEE
T ss_pred CCcCcCCCCCCccc
Confidence 45678999999875
No 191
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.15 E-value=24 Score=22.73 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=32.6
Q ss_pred cccccccccccccccccccccCCCCccccHHHHHHHHHHHhhCCCcccccCCCCCCC
Q 045388 42 PSRSSCEICRERRENDQMFKIESCIHSFCSDCINKHVATKIQGGIITPVTCPGPDCK 98 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~ 98 (214)
...+.| ||........|+..-.|.-.|...|+.--. ..-. ....||. |.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~----~~~p-~~w~C~~--C~ 74 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDR----QHIP-DTYLCER--CQ 74 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCT----TSCC-SSBCCTT--TS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCc----cCCC-CCEECCC--Cc
Confidence 446778 787776666777778898888888874321 1111 2478998 75
No 192
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.86 E-value=27 Score=22.66 Aligned_cols=15 Identities=27% Similarity=0.910 Sum_probs=8.5
Q ss_pred ccCCCCCccceecCC
Q 045388 193 RKCPNCKYHIERTGG 207 (214)
Q Consensus 193 k~CP~C~~~iek~~G 207 (214)
..||.|+..++..+|
T Consensus 33 ~~CP~Cq~eL~~~g~ 47 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG 47 (101)
T ss_dssp CBCSSSCSBEEEETT
T ss_pred ccCccCCCcceecCC
Confidence 456666665555544
No 193
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=27.65 E-value=13 Score=30.77 Aligned_cols=57 Identities=19% Similarity=0.627 Sum_probs=0.0
Q ss_pred ccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCCCCCChHHHHHHHHHHhCCCccCCCCCccceec
Q 045388 134 YCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVPWHPGREELMMRELVKKKQLRKCPNCKYHIERT 205 (214)
Q Consensus 134 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~h~~~~~~~~~~~~~~~~~k~CP~C~~~iek~ 205 (214)
.|. .|+..+... .....|..||..||..|-...-. . ........|-|-.|...+.+.
T Consensus 377 ~c~--~c~~~f~~~------~r~h~Cr~Cg~~~C~~Cs~~~~~------~-~~~~~~~~rvC~~C~~~l~~~ 433 (434)
T 3mpx_A 377 MCM--NCGCDFSLT------LRRHHCHACGKIVCRNCSRNKYP------L-KYLKDRMAKVCDGCFGELKKR 433 (434)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cCC--CcCCCCCCc------chhhhcccCcCEeehhhCCCeee------C-CCCCCCcCEecHHHHHHHHhC
Confidence 465 666555322 24567999999999999763211 0 111234567888887766543
No 194
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.07 E-value=94 Score=17.81 Aligned_cols=34 Identities=29% Similarity=0.720 Sum_probs=25.7
Q ss_pred ccccccccccccccccccccCCCCcccc-HHHHHHHHHH
Q 045388 43 SRSSCEICRERRENDQMFKIESCIHSFC-SDCINKHVAT 80 (214)
Q Consensus 43 ~~~~C~iC~~~~~~~~~~~~~~C~H~fC-~~Cl~~~~~~ 80 (214)
....|.||.. . . -+....|+-.|| ..|++.|-..
T Consensus 11 ~~~~C~vC~~--~-~-kY~CPrC~~~yCSl~C~k~Hk~~ 45 (56)
T 2yqq_A 11 STVVCVICLE--K-P-KYRCPACRVPYCSVVCFRKHKEQ 45 (56)
T ss_dssp CCCCCTTTCS--C-C-SEECTTTCCEESSHHHHHHHHHH
T ss_pred CCCccCcCcC--C-C-eeeCCCCCCCeeCHHHHHHHHhh
Confidence 3457999977 1 2 245789999999 7999999754
No 195
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=25.91 E-value=11 Score=20.72 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=19.5
Q ss_pred cCcccCCCCChhhccccCCCCCCC
Q 045388 154 LSESECPYCHRLFCAHCYVPWHPG 177 (214)
Q Consensus 154 ~~~~~C~~C~~~~C~~C~~~~h~~ 177 (214)
...++|..|+..+|..|....|.+
T Consensus 16 ~l~lfC~~~~~~iC~~C~~~~H~~ 39 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQLNAHKD 39 (50)
T ss_dssp BCCEEETTTTEEECHHHHHTTTTT
T ss_pred CEEEEeCCCCEEEecccCCCcCCC
Confidence 467789999999999997766655
No 196
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=25.87 E-value=28 Score=26.98 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=12.7
Q ss_pred CCccCCCCCccceec
Q 045388 191 QLRKCPNCKYHIERT 205 (214)
Q Consensus 191 ~~k~CP~C~~~iek~ 205 (214)
..++||.|+..|++.
T Consensus 239 ~g~pC~~CG~~I~~~ 253 (268)
T 1k82_A 239 KGEPCRVCGTPIVAT 253 (268)
T ss_dssp TTSBCTTTCCBCEEE
T ss_pred CCCCCCCCCCEeeEE
Confidence 348999999999876
No 197
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=25.82 E-value=29 Score=27.01 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=12.6
Q ss_pred CCccCCCCCccceec
Q 045388 191 QLRKCPNCKYHIERT 205 (214)
Q Consensus 191 ~~k~CP~C~~~iek~ 205 (214)
..++||.|+..|+|.
T Consensus 244 ~g~pC~~CG~~I~~~ 258 (273)
T 3u6p_A 244 QGNPCKRCGTPIEKT 258 (273)
T ss_dssp TTSBCTTTCCBCEEE
T ss_pred CcCCCCCCCCeEEEE
Confidence 347999999999875
No 198
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=25.71 E-value=23 Score=21.16 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=25.8
Q ss_pred CCCCCcccccccccccccccccccccCCCCccccHHHHH
Q 045388 37 SPSSPPSRSSCEICRERRENDQMFKIESCIHSFCSDCIN 75 (214)
Q Consensus 37 ~~~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~Cl~ 75 (214)
+...+.....| ||........|+....|..-|...|+.
T Consensus 12 ~~~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvg 49 (68)
T 3o70_A 12 ENLYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAK 49 (68)
T ss_dssp --CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTT
T ss_pred ccCCCCCceEe-ECCCcCCCCCEEECCCCCccccccccC
Confidence 34455567888 998876655566667788777777764
No 199
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.31 E-value=29 Score=19.28 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=8.6
Q ss_pred CCccCCCCCccc
Q 045388 191 QLRKCPNCKYHI 202 (214)
Q Consensus 191 ~~k~CP~C~~~i 202 (214)
..+.||+|++..
T Consensus 11 ~~~~CPrCn~~f 22 (49)
T 2e72_A 11 GRKICPRCNAQF 22 (49)
T ss_dssp SCCCCTTTCCCC
T ss_pred CceeCCcccccc
Confidence 457788888754
No 200
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=25.31 E-value=57 Score=19.60 Aligned_cols=36 Identities=14% Similarity=0.439 Sum_probs=25.1
Q ss_pred Cccccccccccccc--ccccccccCCCCccccHHHHHH
Q 045388 41 PPSRSSCEICRERR--ENDQMFKIESCIHSFCSDCINK 76 (214)
Q Consensus 41 ~~~~~~C~iC~~~~--~~~~~~~~~~C~H~fC~~Cl~~ 76 (214)
......|.||.+.- ....++..-.|.-.|...|+.-
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCC
Confidence 34467899998753 3345555668888888888763
No 201
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.72 E-value=64 Score=24.59 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=26.8
Q ss_pred cCCCCCCCCcCcHHHHhhcCCHHHHHHHHHHHHHHHhcCCCCcccCccCCCceeeecCCC
Q 045388 91 TCPGPDCKSVLKFDACKSVLSKNVLELWEKALSQELIDASQGIYCPFKDCSAKLVYENDG 150 (214)
Q Consensus 91 ~CP~~~C~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~ 150 (214)
+|- ||...|++..+..+ ......++|| .|+.+++..+..
T Consensus 200 ~C~--GC~~~lppq~~~~i-----------------~~~~~Iv~Cp--~CgRIL~~~~~~ 238 (256)
T 3na7_A 200 ACG--GCFIRLNDKIYTEV-----------------LTSGDMITCP--YCGRILYAEGAY 238 (256)
T ss_dssp BCT--TTCCBCCHHHHHHH-----------------HHSSSCEECT--TTCCEEECSCC-
T ss_pred ccC--CCCeeeCHHHHHHH-----------------HCCCCEEECC--CCCeeEEeCcch
Confidence 464 48888877765433 1245778999 999999987653
No 202
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=24.59 E-value=78 Score=23.70 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=7.8
Q ss_pred cccCccCCCce
Q 045388 133 IYCPFKDCSAK 143 (214)
Q Consensus 133 ~~Cp~~~C~~~ 143 (214)
=.||.-.|.+-
T Consensus 107 G~CPRv~C~~q 117 (215)
T 4dgl_A 107 GYCPRVYCENQ 117 (215)
T ss_dssp CBCCBGGGTSC
T ss_pred CcCCccccCCC
Confidence 37888888843
No 203
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=24.52 E-value=44 Score=29.58 Aligned_cols=60 Identities=20% Similarity=0.440 Sum_probs=38.4
Q ss_pred CCcccccccccccccccccc-------cccCCCC--------------------ccccHHHHHHHHHHHhhCCCcccccC
Q 045388 40 SPPSRSSCEICRERRENDQM-------FKIESCI--------------------HSFCSDCINKHVATKIQGGIITPVTC 92 (214)
Q Consensus 40 ~~~~~~~C~iC~~~~~~~~~-------~~~~~C~--------------------H~fC~~Cl~~~~~~~i~~~~~~~i~C 92 (214)
......+|+-|+.++-.+.- .....|| -.+|.+|.++|-.-.-+.-..-++.|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 44567899999998754321 1144554 34899999999643222222258999
Q ss_pred CCCCCCCcC
Q 045388 93 PGPDCKSVL 101 (214)
Q Consensus 93 P~~~C~~~l 101 (214)
|. |+-.+
T Consensus 93 p~--CGP~l 99 (657)
T 3ttc_A 93 PE--CGPYL 99 (657)
T ss_dssp TT--TSCCE
T ss_pred cc--cCccc
Confidence 99 87655
No 204
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=24.22 E-value=32 Score=26.57 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=12.1
Q ss_pred CccCCCCCccceec
Q 045388 192 LRKCPNCKYHIERT 205 (214)
Q Consensus 192 ~k~CP~C~~~iek~ 205 (214)
.++||.|+..|++.
T Consensus 234 g~pC~~CG~~I~~~ 247 (262)
T 1k3x_A 234 GEPCERCGSIIEKT 247 (262)
T ss_dssp TSBCTTTCCBCEEE
T ss_pred cCCCCCCCCEeEEE
Confidence 36899999999876
No 205
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.70 E-value=1.9e+02 Score=21.21 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCcccccccccccccc
Q 045388 6 SSAAFATLAEELEIQEALMASTITSQMAKSASPSSPPSRSSCEICRERRE 55 (214)
Q Consensus 6 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~ 55 (214)
+...++.+.++....+.++..+...-.. . .....+.|.+|.-.+.
T Consensus 138 ~a~~f~~i~~~E~~H~~~~~~ll~~l~~----~-~~~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 138 AVHVFTRAKLAESVHAERYLAAYNDIDA----P-DDDKFHLCPICGYIHK 182 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC----C-CSCCEEECSSSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-CCCcEEEECCCCCEEc
Confidence 4466777777777777766666542211 1 2234677777766544
No 206
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.65 E-value=25 Score=15.17 Aligned_cols=9 Identities=44% Similarity=1.206 Sum_probs=4.5
Q ss_pred cCCCCChhh
Q 045388 158 ECPYCHRLF 166 (214)
Q Consensus 158 ~C~~C~~~~ 166 (214)
.|+.|+..|
T Consensus 3 ~C~~C~k~f 11 (27)
T 1znf_A 3 KCGLCERSF 11 (27)
T ss_dssp BCSSSCCBC
T ss_pred cCCCCCCcC
Confidence 355555443
No 207
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.06 E-value=17 Score=15.76 Aligned_cols=11 Identities=27% Similarity=0.748 Sum_probs=6.1
Q ss_pred cCCCCChhhcc
Q 045388 158 ECPYCHRLFCA 168 (214)
Q Consensus 158 ~C~~C~~~~C~ 168 (214)
.|+.|+..|=.
T Consensus 4 ~C~~C~k~f~~ 14 (26)
T 2lvu_A 4 VCERCGKRFVQ 14 (26)
Confidence 46666665543
No 208
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=23.24 E-value=31 Score=26.81 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.3
Q ss_pred CCccCCCCCccceec
Q 045388 191 QLRKCPNCKYHIERT 205 (214)
Q Consensus 191 ~~k~CP~C~~~iek~ 205 (214)
..++||.|+..|++.
T Consensus 241 ~G~pC~~CG~~I~~~ 255 (271)
T 2xzf_A 241 TGEKCSRCGAEIQKI 255 (271)
T ss_dssp TTSBCTTTCCBCEEE
T ss_pred CCCCCCCCCCEeeEE
Confidence 348899999999875
No 209
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.99 E-value=22 Score=15.56 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=5.7
Q ss_pred ccCCCCChhh
Q 045388 157 SECPYCHRLF 166 (214)
Q Consensus 157 ~~C~~C~~~~ 166 (214)
+.|+.|+..|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 4466666554
No 210
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.90 E-value=25 Score=15.44 Aligned_cols=9 Identities=44% Similarity=1.099 Sum_probs=4.6
Q ss_pred cCCCCChhh
Q 045388 158 ECPYCHRLF 166 (214)
Q Consensus 158 ~C~~C~~~~ 166 (214)
.|+.|+..|
T Consensus 4 ~C~~C~~~f 12 (29)
T 1ard_A 4 VCEVCTRAF 12 (29)
T ss_dssp BCTTTCCBC
T ss_pred ECCCCCccc
Confidence 455555543
No 211
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.83 E-value=68 Score=19.01 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=21.9
Q ss_pred CCCcccccccccccccccccccccCCCCccccHH
Q 045388 39 SSPPSRSSCEICRERRENDQMFKIESCIHSFCSD 72 (214)
Q Consensus 39 ~~~~~~~~C~iC~~~~~~~~~~~~~~C~H~fC~~ 72 (214)
........|..|-..+.... +.. .|+..||..
T Consensus 10 ~~~~~~~rC~~C~kkvgl~~-f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 10 RPVRPNNRCFSCNKKVGVMG-FKC-KCGSTFCGS 41 (64)
T ss_dssp CCSCCSCSCTTTCCCCTTSC-EEC-TTSCEECSS
T ss_pred CCCCcCCcChhhCCcccccC-eEe-ecCCEeccc
Confidence 33445678999988765542 444 799999963
No 212
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=22.81 E-value=17 Score=21.38 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=24.8
Q ss_pred cCCCCCCCCcCcHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 045388 91 TCPGPDCKSVLKFDACKSVLSKNVLELWEKALSQELID 128 (214)
Q Consensus 91 ~CP~~~C~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 128 (214)
.||. |+......+=..+-++|.|.+|+..+..++..
T Consensus 20 ~CP~--CG~~T~~~hParfSp~Dky~~yR~~~kk~~~~ 55 (60)
T 2apo_B 20 ICPK--CGEKTVIPKPPKFSLEDRWGKYRRMLKRALKN 55 (60)
T ss_dssp BCSS--SCSBCBCCCCCCCCTTCTTHHHHHHHHHHHHT
T ss_pred cCcC--CCCcCCCCCCCCCCCCcchHHHHHHHHHHhcc
Confidence 4888 87766544444566678888898887776544
No 213
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.77 E-value=39 Score=26.16 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=11.9
Q ss_pred CCccCCCCCccceec
Q 045388 191 QLRKCPNCKYHIERT 205 (214)
Q Consensus 191 ~~k~CP~C~~~iek~ 205 (214)
..++||.|+..|++.
T Consensus 234 ~g~pC~~CG~~I~~~ 248 (266)
T 1ee8_A 234 EGLPCPACGRPVERR 248 (266)
T ss_dssp TTSBCTTTCCBCEEE
T ss_pred CCCCCCCCCCEeeEE
Confidence 457899999988875
No 214
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=22.59 E-value=1.3e+02 Score=19.40 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=10.5
Q ss_pred ccccCCCCCCCCcCcH
Q 045388 88 TPVTCPGPDCKSVLKF 103 (214)
Q Consensus 88 ~~i~CP~~~C~~~l~~ 103 (214)
..+.||. |+..|.+
T Consensus 7 dILaCP~--cK~pL~l 20 (97)
T 2k5r_A 7 HLLCSPD--TRQPLSL 20 (97)
T ss_dssp SSCCCCT--TSSCCEE
T ss_pred hheECCC--CCCcccc
Confidence 3579999 8887754
No 215
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=21.54 E-value=39 Score=18.30 Aligned_cols=18 Identities=11% Similarity=0.386 Sum_probs=15.0
Q ss_pred CcccCccCCCceeeecCC
Q 045388 132 GIYCPFKDCSAKLVYEND 149 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~~ 149 (214)
.+.|-+|+|..++.++..
T Consensus 11 ~vkCeTPnCpF~mSVnTQ 28 (49)
T 2eqg_A 11 DVKCETPNCPFFMSVNTQ 28 (49)
T ss_dssp SSBCSSTTCCSBCCTTTT
T ss_pred EEeecCCCCCeEEEecCc
Confidence 367999999999988765
No 216
>2jyd_A F5 domain of myelin transcription factor 1; zinc-finger, MYT1, alternative splicing, developmental protein, differentiation, DNA-binding; NMR {Mus musculus}
Probab=21.53 E-value=72 Score=17.54 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=12.1
Q ss_pred CcccCccCCCceeeecC
Q 045388 132 GIYCPFKDCSAKLVYEN 148 (214)
Q Consensus 132 ~~~Cp~~~C~~~~~~~~ 148 (214)
...||+|+|...-....
T Consensus 9 ~~~CPtpGC~G~GHv~G 25 (46)
T 2jyd_A 9 DLKCPTPGCDGSGHITG 25 (46)
T ss_dssp TTSCSCSSCCSBSCSSS
T ss_pred CCcCCCCCcCccCcccc
Confidence 34699999997654443
No 217
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.50 E-value=27 Score=15.20 Aligned_cols=10 Identities=40% Similarity=1.192 Sum_probs=5.5
Q ss_pred cCCCCChhhc
Q 045388 158 ECPYCHRLFC 167 (214)
Q Consensus 158 ~C~~C~~~~C 167 (214)
.|+.|+..|-
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 2m0e_A 4 KCPHCDKKFN 13 (29)
T ss_dssp CCSSCCCCCC
T ss_pred cCCCCCcccC
Confidence 4666665543
No 218
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.40 E-value=48 Score=20.40 Aligned_cols=37 Identities=22% Similarity=0.563 Sum_probs=25.5
Q ss_pred CCCcccCccCCCceeeecCCCCCCcCcccCCCCChhhccccCCC
Q 045388 130 SQGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCAHCYVP 173 (214)
Q Consensus 130 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 173 (214)
++...|. .|...+-.--. .-..|+.|....|..|...
T Consensus 23 ~~~r~Ca--rC~~~LG~l~~-----~g~~C~~Ck~rVC~~Crv~ 59 (76)
T 2csz_A 23 YSDRTCA--RCQESLGRLSP-----KTNTCRGCNHLVCRDCRIQ 59 (76)
T ss_dssp CCCCBCS--SSCCBCSSSCT-----TTSEETTTTEECCTTSEEE
T ss_pred CCccchh--hhCcccccccc-----CCCcCcccChhhccccccc
Confidence 3445777 78765543222 4456999999999999874
No 219
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=20.91 E-value=33 Score=24.82 Aligned_cols=27 Identities=26% Similarity=0.700 Sum_probs=17.1
Q ss_pred ccCccCCCceeeecCCCCCCcCcccCCCCChh
Q 045388 134 YCPFKDCSAKLVYENDGEDVLSESECPYCHRL 165 (214)
Q Consensus 134 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 165 (214)
-||+.+|..-+..... ...+|+.|+..
T Consensus 45 aC~~~~CnKKv~~~~~-----g~~~CekC~~~ 71 (181)
T 1l1o_C 45 ACPTQDCNKKVIDQQN-----GLYRCEKCDTE 71 (181)
T ss_dssp BCCSTTCCCBCEEETT-----TEEEETTTTEE
T ss_pred CCCchhcCCccccCCC-----CeEECCCCCCc
Confidence 5886669887764332 34667777643
No 220
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.81 E-value=31 Score=15.07 Aligned_cols=10 Identities=30% Similarity=0.889 Sum_probs=5.4
Q ss_pred ccCCCCChhh
Q 045388 157 SECPYCHRLF 166 (214)
Q Consensus 157 ~~C~~C~~~~ 166 (214)
+.|+.|++.|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 3466666544
No 221
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=20.80 E-value=69 Score=23.78 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=14.6
Q ss_pred ccccCCCCCCCCcCcHHHHhhcC
Q 045388 88 TPVTCPGPDCKSVLKFDACKSVL 110 (214)
Q Consensus 88 ~~i~CP~~~C~~~l~~~~~~~~l 110 (214)
..+.||. |+..+....|.+-|
T Consensus 48 sg~~C~~--C~~~~~~~~i~nQl 68 (206)
T 3flo_B 48 NGLQCKH--CEQLFTPLQLTSQI 68 (206)
T ss_dssp TEEEETT--TCCBCCHHHHHHHH
T ss_pred ccccCCC--CCCcCCHHHHHHHH
Confidence 4678997 99888765555443
No 222
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.71 E-value=26 Score=15.44 Aligned_cols=9 Identities=44% Similarity=1.268 Sum_probs=5.2
Q ss_pred cCCCCChhh
Q 045388 158 ECPYCHRLF 166 (214)
Q Consensus 158 ~C~~C~~~~ 166 (214)
.|+.|+..|
T Consensus 4 ~C~~C~k~f 12 (29)
T 1rik_A 4 ACPECPKRF 12 (29)
T ss_dssp ECSSSSCEE
T ss_pred cCCCCCchh
Confidence 466666554
No 223
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.63 E-value=5.4 Score=26.15 Aligned_cols=42 Identities=26% Similarity=0.574 Sum_probs=25.1
Q ss_pred CccccHHHHHHHHHHHhhCCCc-ccccCCCCCCCCcCcHHHHhh
Q 045388 66 IHSFCSDCINKHVATKIQGGII-TPVTCPGPDCKSVLKFDACKS 108 (214)
Q Consensus 66 ~H~fC~~Cl~~~~~~~i~~~~~-~~i~CP~~~C~~~l~~~~~~~ 108 (214)
.|.-|..|+.......++.+.. +++.||. .|+..+..-.+..
T Consensus 13 ~h~HC~~C~~~~C~~~~~~~~~C~~i~CP~-~Cga~i~rckL~E 55 (100)
T 2yre_A 13 QHSHCVNCVSRRCMTRPEPGISCDLIGCPL-VCGAVFHSCKADE 55 (100)
T ss_dssp CCTTGGGCCCTTCCCCCCTTTCCCEEECTT-CCSCEEEHHHHHH
T ss_pred cchhHhhhcccccCCCCCCCCeeeeeeCCc-ccCCeeehhhHHH
Confidence 5777777776655444433322 5788882 4877665555443
No 224
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=20.55 E-value=35 Score=15.82 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=8.7
Q ss_pred ccCCCCChhhcccc
Q 045388 157 SECPYCHRLFCAHC 170 (214)
Q Consensus 157 ~~C~~C~~~~C~~C 170 (214)
+.|+.|+..|=..-
T Consensus 3 ~~C~~C~k~f~~~~ 16 (32)
T 2kfq_A 3 FACPACPKRFMRSD 16 (32)
T ss_dssp SSSSSSCTTHHHHH
T ss_pred CCCCCCCcccCCHH
Confidence 35777877665443
No 225
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=20.52 E-value=54 Score=21.96 Aligned_cols=33 Identities=24% Similarity=0.618 Sum_probs=18.8
Q ss_pred CCCcccCccCCCceeeecCCCCCCcCcccCCCCChhhcc
Q 045388 130 SQGIYCPFKDCSAKLVYENDGEDVLSESECPYCHRLFCA 168 (214)
Q Consensus 130 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 168 (214)
.....|| .|+..-..... .-+..|+.|+..|=.
T Consensus 58 ~akytCP--fCGk~~vKR~a----vGIW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 58 NEDHACP--NCGEDRVDRQG----TGIWQCSYCDYKFTG 90 (116)
T ss_dssp HSCEECS--SSCCEEEEEEE----TTEEEETTTCCEEEC
T ss_pred ccCCcCC--CCCCceeEecC----ceeEECCCCCCEEEC
Confidence 4556799 88863322221 246677777766543
No 226
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=20.48 E-value=57 Score=27.49 Aligned_cols=62 Identities=26% Similarity=0.461 Sum_probs=39.7
Q ss_pred cccccccccccccccccccc----------cCCCCccccHHHHHHHHHHHhh--CC-C-------------c--ccccCC
Q 045388 42 PSRSSCEICRERRENDQMFK----------IESCIHSFCSDCINKHVATKIQ--GG-I-------------I--TPVTCP 93 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~~~----------~~~C~H~fC~~Cl~~~~~~~i~--~~-~-------------~--~~i~CP 93 (214)
-....|..|...++..++.. .-.--+-.|..|++.+.....+ .. . + ..|+|-
T Consensus 398 ~~~~~~~~c~~~l~~~~~~~f~~~~l~~v~r~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irc~ 477 (523)
T 3py7_A 398 FSGLDCLWCREPLTEVDAFRCMVKDFHVVIREGCRYGACTICLENCLATERRLWQGVPVTGEEAELLHGKTLDRLCIRCC 477 (523)
T ss_dssp CTTCEETTTCCBCCHHHHHHHHHTTCCCEEETTEEEECCHHHHHHHHHHHHHHSCCEEECHHHHHHHTTSCGGGSCCEET
T ss_pred cCCcEEEecCCcCCHHHHHHHHhcCeEEEEECCeeeeehHHHHHHHHHHHHHhCCCceeEhhHHHHHHCCChhheEEEHh
Confidence 35678999998876543322 2234577999999987653222 11 0 0 468898
Q ss_pred CCCCCCcCcHHH
Q 045388 94 GPDCKSVLKFDA 105 (214)
Q Consensus 94 ~~~C~~~l~~~~ 105 (214)
. |..+|...+
T Consensus 478 ~--c~~~l~~~e 487 (523)
T 3py7_A 478 Y--CGGKLTKNE 487 (523)
T ss_dssp T--TCCBCCHHH
T ss_pred H--CCCcCCHHH
Confidence 7 888887654
No 227
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.46 E-value=2.3e+02 Score=20.02 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCcccccccccccccc
Q 045388 7 SAAFATLAEELEIQEALMASTITSQMAKSASPSSPPSRSSCEICRERRE 55 (214)
Q Consensus 7 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~ 55 (214)
...++.+.+.-...+..+......-... ........+.|++|.-.+.
T Consensus 103 a~~f~~i~~~E~~H~~~~~~~l~~l~~~--~~~~~~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 103 VRTTHYALEAEKIHAELYRKAKEKAEKG--EDIEIKKVYICPICGYTAV 149 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCCCSCEEECTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcCCCCCeeEeCCCCCeeC
Confidence 3555555555555555554443322111 1111234566777765443
No 228
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.42 E-value=30 Score=15.34 Aligned_cols=9 Identities=44% Similarity=1.224 Sum_probs=5.1
Q ss_pred cCCCCChhh
Q 045388 158 ECPYCHRLF 166 (214)
Q Consensus 158 ~C~~C~~~~ 166 (214)
.|+.|+..|
T Consensus 4 ~C~~C~k~f 12 (30)
T 1paa_A 4 ACGLCNRAF 12 (30)
T ss_dssp BCTTTCCBC
T ss_pred CCcccCccc
Confidence 466666554
No 229
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=20.36 E-value=26 Score=19.41 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=19.5
Q ss_pred cCcccCCCCChhhccccCC-CCCCC
Q 045388 154 LSESECPYCHRLFCAHCYV-PWHPG 177 (214)
Q Consensus 154 ~~~~~C~~C~~~~C~~C~~-~~h~~ 177 (214)
...++|..|+..+|..|.. ..|.+
T Consensus 17 ~l~lfC~~d~~~iC~~C~~~~~H~~ 41 (53)
T 2did_A 17 ALSLFCYEDQEAVCLICAISHTHRA 41 (53)
T ss_dssp BCCEEESSSCSEECHHHHTSSTTTT
T ss_pred eeeEEeCCCCeEEeccccCCCCCCC
Confidence 4677899999999999986 56655
No 230
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=20.24 E-value=66 Score=29.04 Aligned_cols=58 Identities=21% Similarity=0.449 Sum_probs=37.1
Q ss_pred cccccccccccccccccc-------cccCCCC--------------------ccccHHHHHHHHHHHhhCCCcccccCCC
Q 045388 42 PSRSSCEICRERRENDQM-------FKIESCI--------------------HSFCSDCINKHVATKIQGGIITPVTCPG 94 (214)
Q Consensus 42 ~~~~~C~iC~~~~~~~~~-------~~~~~C~--------------------H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 94 (214)
.+..+|+-|+.++-++.- .....|| -.+|.+|.++|-.-.-+.-..-++.||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 456789999999754321 1145665 2479999999954322222225899999
Q ss_pred CCCCCcC
Q 045388 95 PDCKSVL 101 (214)
Q Consensus 95 ~~C~~~l 101 (214)
|+-.+
T Consensus 189 --CGP~l 193 (761)
T 3vth_A 189 --CGPSL 193 (761)
T ss_dssp --TSCCE
T ss_pred --cCCee
Confidence 76544
No 231
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=20.21 E-value=62 Score=29.22 Aligned_cols=59 Identities=19% Similarity=0.402 Sum_probs=37.3
Q ss_pred Ccccccccccccccccccc-------cccCCCC--------------------ccccHHHHHHHHHHHhhCCCcccccCC
Q 045388 41 PPSRSSCEICRERRENDQM-------FKIESCI--------------------HSFCSDCINKHVATKIQGGIITPVTCP 93 (214)
Q Consensus 41 ~~~~~~C~iC~~~~~~~~~-------~~~~~C~--------------------H~fC~~Cl~~~~~~~i~~~~~~~i~CP 93 (214)
.....+|+-|+.++-.+.- .....|| -.+|.+|-++|-.-.-+.-..-++.||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 3456789999999754321 1144554 347999999996332222222589999
Q ss_pred CCCCCCcC
Q 045388 94 GPDCKSVL 101 (214)
Q Consensus 94 ~~~C~~~l 101 (214)
. |+-.+
T Consensus 183 ~--CGP~l 188 (772)
T 4g9i_A 183 V--CGPSY 188 (772)
T ss_dssp T--TSCCE
T ss_pred c--CCceE
Confidence 9 76544
No 232
>4fyy_B Aspartate carbamoyltransferase regulatory chain; pyrimidine nucleotide biosynthesis, feedback inhibition, all transferase; HET: UTP CTP; 1.94A {Escherichia coli} PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G* 1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B* 1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B 1tug_B* 1xjw_B* ...
Probab=20.07 E-value=48 Score=23.43 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=19.5
Q ss_pred CCcccCccCCCcee--------eecCCCCCCcCcccCCCCChhh
Q 045388 131 QGIYCPFKDCSAKL--------VYENDGEDVLSESECPYCHRLF 166 (214)
Q Consensus 131 ~~~~Cp~~~C~~~~--------~~~~~~~~~~~~~~C~~C~~~~ 166 (214)
+.+.||+|+|=.-. ..... ....++|..|.+.|
T Consensus 105 gvi~C~Np~CIT~~E~v~~~f~v~~~~---~~~~~rC~YCe~~~ 145 (153)
T 4fyy_B 105 NVLVCPNSNCISHAEPVSSSFAVRKRA---NDIALKCKYCEKEF 145 (153)
T ss_dssp SSCCCSCTTBTTTTSSCCCEEEEEECS---SSEEEEETTTCCEE
T ss_pred CeEECCCCCcccCCCCCCCEEEEEEcC---CCCEEEeeCCCCEe
Confidence 44589999997432 11111 12357898887654
Done!