Query 045389
Match_columns 136
No_of_seqs 119 out of 553
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 12:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00101 14_3_3 14-3-3 homol 100.0 1.4E-44 3E-49 291.2 10.5 127 7-136 1-156 (244)
2 COG5040 BMH1 14-3-3 family pro 100.0 2.1E-44 4.5E-49 283.1 7.9 131 3-136 1-158 (268)
3 PF00244 14-3-3: 14-3-3 protei 100.0 1.5E-42 3.2E-47 277.4 8.2 127 7-136 1-154 (236)
4 KOG0841 Multifunctional chaper 100.0 4E-38 8.6E-43 251.8 7.8 128 6-136 1-156 (247)
5 PF07719 TPR_2: Tetratricopept 81.7 4.2 9.1E-05 21.5 4.0 29 10-38 4-32 (34)
6 PF13174 TPR_6: Tetratricopept 80.5 4.8 0.0001 21.0 4.0 29 10-38 3-31 (33)
7 PF13181 TPR_8: Tetratricopept 79.1 4.2 9.1E-05 21.6 3.5 30 9-38 3-32 (34)
8 PF09976 TPR_21: Tetratricopep 76.7 25 0.00053 25.1 9.1 95 10-135 51-145 (145)
9 PF13428 TPR_14: Tetratricopep 74.6 5.4 0.00012 23.0 3.3 29 10-38 4-32 (44)
10 PF00515 TPR_1: Tetratricopept 66.4 17 0.00038 19.2 4.0 29 10-38 4-32 (34)
11 PF13176 TPR_7: Tetratricopept 56.2 27 0.00059 19.2 3.7 27 10-36 2-28 (36)
12 PF13432 TPR_16: Tetratricopep 54.0 35 0.00077 20.5 4.3 30 9-38 33-62 (65)
13 smart00028 TPR Tetratricopepti 51.6 26 0.00056 16.3 3.6 29 10-38 4-32 (34)
14 cd02682 MIT_AAA_Arch MIT: doma 50.4 65 0.0014 21.6 5.3 53 9-67 8-65 (75)
15 PF13414 TPR_11: TPR repeat; P 47.5 41 0.00088 20.4 3.8 30 9-38 5-34 (69)
16 PF14559 TPR_19: Tetratricopep 40.7 46 0.001 20.0 3.3 32 6-37 24-55 (68)
17 PF13371 TPR_9: Tetratricopept 34.3 85 0.0018 19.0 3.8 31 8-38 30-60 (73)
18 cd05493 Bromo_ALL-1 Bromodomai 33.0 57 0.0012 24.3 3.2 34 68-101 76-116 (131)
19 PF14689 SPOB_a: Sensor_kinase 32.8 46 0.001 21.1 2.4 22 14-35 30-51 (62)
20 PF12895 Apc3: Anaphase-promot 30.7 1E+02 0.0022 19.6 3.8 23 10-32 61-83 (84)
21 PRK15359 type III secretion sy 28.7 1.2E+02 0.0027 21.7 4.3 27 12-38 29-55 (144)
22 PRK15443 pduE propanediol dehy 28.3 2.6E+02 0.0057 21.1 6.3 39 6-45 47-85 (138)
23 PRK11189 lipoprotein NlpI; Pro 27.6 1.1E+02 0.0023 24.7 4.2 30 9-38 238-267 (296)
24 TIGR02795 tol_pal_ybgF tol-pal 27.0 1.2E+02 0.0027 19.5 3.9 30 9-38 41-70 (119)
25 PF04781 DUF627: Protein of un 27.0 1.2E+02 0.0025 22.0 3.9 55 77-135 16-71 (111)
26 cd08637 DNA_pol_A_pol_I_C Poly 26.0 1.2E+02 0.0026 25.9 4.4 46 56-101 3-48 (377)
27 smart00745 MIT Microtubule Int 25.8 1.4E+02 0.003 19.0 3.8 28 9-36 10-37 (77)
28 PF02287 Dehydratase_SU: Dehyd 24.4 1E+02 0.0022 23.2 3.2 39 6-45 48-86 (136)
29 PRK10370 formate-dependent nit 23.8 1.5E+02 0.0032 22.7 4.2 29 10-38 147-175 (198)
30 cd02678 MIT_VPS4 MIT: domain c 23.3 1.7E+02 0.0036 18.9 3.8 29 8-36 7-35 (75)
31 COG2976 Uncharacterized protei 22.5 4.1E+02 0.009 21.3 9.6 94 10-135 92-186 (207)
32 cd02656 MIT MIT: domain contai 22.4 1.8E+02 0.0039 18.5 3.9 28 9-36 8-35 (75)
33 PF13429 TPR_15: Tetratricopep 22.0 1.1E+02 0.0025 23.9 3.3 30 9-38 148-177 (280)
34 KOG4234 TPR repeat-containing 21.9 1.3E+02 0.0027 24.9 3.5 30 9-38 170-199 (271)
35 cd00189 TPR Tetratricopeptide 21.5 1.7E+02 0.0037 16.6 3.9 29 10-38 3-31 (100)
36 PF04212 MIT: MIT (microtubule 21.0 2.3E+02 0.0049 17.7 4.1 27 9-35 7-33 (69)
37 PF05184 SapB_1: Saposin-like 20.8 82 0.0018 17.4 1.7 22 69-90 3-24 (39)
38 PF13424 TPR_12: Tetratricopep 20.5 1.7E+02 0.0036 18.0 3.3 27 10-36 49-75 (78)
39 PF05010 TACC: Transforming ac 20.2 1E+02 0.0023 24.5 2.8 18 63-80 188-205 (207)
No 1
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.4e-44 Score=291.20 Aligned_cols=127 Identities=67% Similarity=0.917 Sum_probs=118.5
Q ss_pred hHHHHHHHHhHHHhcCHHHHHHHHHHHHhh-C--C-CCCCccc-----------hhc---------cc-----chhhhHH
Q 045389 7 REENVYMAKLAEQAEWYEKMVQYMEKVIVS-A--S-TSEEPPL-----------RRL---------QE-----RHRRTAR 57 (136)
Q Consensus 7 re~~v~~AklaeqaeRy~dMv~~mk~~v~~-~--~-s~EERnL-----------rR~---------qk-----~~~~~~~ 57 (136)
|+++||+|||++||||||||+.+||++++. + . |+||||| ||+ || ++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999987 4 3 9999999 565 33 4556789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCcchHHHHhhhccccccccchhhcccCchhHHHHHHHHHHHHHHhhC
Q 045389 58 LLEYRLKIEAELTEICSGILKLLDQKLVPTAAAADSKVFYLKMKGDYLLSLLNLAEFKTGDERKVAVENTLNAYKSAQV 136 (136)
Q Consensus 58 i~~yr~kie~EL~~iC~dil~lid~~Lip~~~~~eskVFy~KmKGDYyR~~~YlAE~~~~~~~~~~~~~a~~aY~~A~~ 136 (136)
+++||++|++||..+|++||+|||++|||.+++++++|||+|||||||| |+|||.+|++++.++++|++||++|++
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyR---YlaE~~~~~e~~~~~~~a~~aY~~A~e 156 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHR---YLAEFKTGAERKEAAENTLVAYKSAQD 156 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHH---HHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999974
No 2
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-44 Score=283.11 Aligned_cols=131 Identities=50% Similarity=0.770 Sum_probs=124.8
Q ss_pred CCCChHHHHHHHHhHHHhcCHHHHHHHHHHHHhhCC--CCCCccc-----------hhc---------cc-----chhhh
Q 045389 3 APSPREENVYMAKLAEQAEWYEKMVQYMEKVIVSAS--TSEEPPL-----------RRL---------QE-----RHRRT 55 (136)
Q Consensus 3 m~~~re~~v~~AklaeqaeRy~dMv~~mk~~v~~~~--s~EERnL-----------rR~---------qk-----~~~~~ 55 (136)
|+..|++.||+||||+|||||++||+-||.++..+. |++|||| ||+ || +..++
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv 80 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHH
Confidence 677799999999999999999999999999998887 9999999 776 55 57789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCcchHHHHhhhccccccccchhhcccCchhHHHHHHHHHHHHHHhh
Q 045389 56 ARLLEYRLKIEAELTEICSGILKLLDQKLVPTAAAADSKVFYLKMKGDYLLSLLNLAEFKTGDERKVAVENTLNAYKSAQ 135 (136)
Q Consensus 56 ~~i~~yr~kie~EL~~iC~dil~lid~~Lip~~~~~eskVFy~KmKGDYyR~~~YlAE~~~~~~~~~~~~~a~~aY~~A~ 135 (136)
.+|++||++|+.||..||+|||++|++||||.+++.|++|||+|||||||| |+|||..|+.+.++.+.|..+|+.|.
T Consensus 81 ~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyR---YlAEf~~G~~~~e~a~~slE~YK~As 157 (268)
T COG5040 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYR---YLAEFSVGEAREEAADSSLEAYKAAS 157 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHH---HHHHhccchHhHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999999986
Q ss_pred C
Q 045389 136 V 136 (136)
Q Consensus 136 ~ 136 (136)
+
T Consensus 158 e 158 (268)
T COG5040 158 E 158 (268)
T ss_pred H
Confidence 4
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=1.5e-42 Score=277.40 Aligned_cols=127 Identities=50% Similarity=0.823 Sum_probs=118.5
Q ss_pred hHHHHHHHHhHHHhcCHHHHHHHHHHHHhhCC--CCCCccc-----------hhc---------cc-----chhhhHHHH
Q 045389 7 REENVYMAKLAEQAEWYEKMVQYMEKVIVSAS--TSEEPPL-----------RRL---------QE-----RHRRTARLL 59 (136)
Q Consensus 7 re~~v~~AklaeqaeRy~dMv~~mk~~v~~~~--s~EERnL-----------rR~---------qk-----~~~~~~~i~ 59 (136)
|++++|+|||++|||||+||+++||++++.++ |.||||| +|+ ++ ++.++..|+
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999988 9999999 555 22 477889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCcCCcchHHHHhhhccccccccchhhcccCchhHHHHHHHHHHHHHHhhC
Q 045389 60 EYRLKIEAELTEICSGILKLLDQKLVPTAAAADSKVFYLKMKGDYLLSLLNLAEFKTGDERKVAVENTLNAYKSAQV 136 (136)
Q Consensus 60 ~yr~kie~EL~~iC~dil~lid~~Lip~~~~~eskVFy~KmKGDYyR~~~YlAE~~~~~~~~~~~~~a~~aY~~A~~ 136 (136)
+|+++|++||..+|++||+|||++|+|.+++++++|||+|||||||| |+|||.+|+++..+++.|.+||++|++
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyR---YlaE~~~~~~~~~~~~~a~~aY~~A~~ 154 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYR---YLAEFDSGDEKKEAAEKALEAYEEALE 154 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHH---HHHHCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccc---cccccccchhhHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999999999999999963
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-38 Score=251.78 Aligned_cols=128 Identities=55% Similarity=0.795 Sum_probs=121.1
Q ss_pred ChHHHHHHHHhHHHhcCHHHHHHHHHHHHhhCC--CCCCccc-----------hhc---------cc-----chhhhHHH
Q 045389 6 PREENVYMAKLAEQAEWYEKMVQYMEKVIVSAS--TSEEPPL-----------RRL---------QE-----RHRRTARL 58 (136)
Q Consensus 6 ~re~~v~~AklaeqaeRy~dMv~~mk~~v~~~~--s~EERnL-----------rR~---------qk-----~~~~~~~i 58 (136)
+|+++|++|+|++|||||+||+.+||.+++.+. |+||||| ||+ || ++.++..+
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 489999999999999999999999999999877 9999999 777 55 67789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCcCC-cchHHHHhhhccccccccchhhcccCchhHHHHHHHHHHHHHHhhC
Q 045389 59 LEYRLKIEAELTEICSGILKLLDQKLVPTAAA-ADSKVFYLKMKGDYLLSLLNLAEFKTGDERKVAVENTLNAYKSAQV 136 (136)
Q Consensus 59 ~~yr~kie~EL~~iC~dil~lid~~Lip~~~~-~eskVFy~KmKGDYyR~~~YlAE~~~~~~~~~~~~~a~~aY~~A~~ 136 (136)
..||++|+.||..+|++||.++|.+|+|+++. .+++|||+|||||||| |+|||.+|++|+.++++++.+|+.|.+
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~r---ylae~~sg~erke~~~~sl~aYk~a~~ 156 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYR---YLAEFASGDERKEAADQSLEAYKEASE 156 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHH---HHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 8899999999999999 999999999999999999999999863
No 5
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.67 E-value=4.2 Score=21.46 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.0
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
+..++.+..+.|+|++.++++++++..+|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 56789999999999999999999998865
No 6
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.46 E-value=4.8 Score=20.98 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
+..+|.+..+.|.+++.+..++.++...|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 56789999999999999999999998765
No 7
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.14 E-value=4.2 Score=21.63 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=26.1
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
-+..++++..+.|.|+..+.+++++++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356789999999999999999999988754
No 8
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=76.69 E-value=25 Score=25.13 Aligned_cols=95 Identities=25% Similarity=0.309 Sum_probs=55.8
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhhCCCCCCccchhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcC
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVSASTSEEPPLRRLQERHRRTARLLEYRLKIEAELTEICSGILKLLDQKLVPTAA 89 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~~~s~EERnLrR~qk~~~~~~~i~~yr~kie~EL~~iC~dil~lid~~Lip~~~ 89 (136)
.+.+|++.-..|.|++.+..+++++...++++=+++ ..-..-.|.-.... -++.+.+|+. +|
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~------------a~l~LA~~~~~~~~-~d~Al~~L~~--~~--- 112 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL------------ARLRLARILLQQGQ-YDEALATLQQ--IP--- 112 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH------------HHHHHHHHHHHcCC-HHHHHHHHHh--cc---
Confidence 466788888889999999999998875321111111 11111122222221 1355656644 22
Q ss_pred CcchHHHHhhhccccccccchhhcccCchhHHHHHHHHHHHHHHhh
Q 045389 90 AADSKVFYLKMKGDYLLSLLNLAEFKTGDERKVAVENTLNAYKSAQ 135 (136)
Q Consensus 90 ~~eskVFy~KmKGDYyR~~~YlAE~~~~~~~~~~~~~a~~aY~~A~ 135 (136)
++...-+++-++||-|. ..|+ .+.|..+|+.|+
T Consensus 113 ~~~~~~~~~~~~Gdi~~--------~~g~-----~~~A~~~y~~Al 145 (145)
T PF09976_consen 113 DEAFKALAAELLGDIYL--------AQGD-----YDEARAAYQKAL 145 (145)
T ss_pred CcchHHHHHHHHHHHHH--------HCCC-----HHHHHHHHHHhC
Confidence 23345667789999985 2344 677999999885
No 9
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=74.61 E-value=5.4 Score=23.03 Aligned_cols=29 Identities=3% Similarity=0.052 Sum_probs=26.5
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
...+|+...+.|++++.+...+++++..|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 56789999999999999999999999877
No 10
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=66.43 E-value=17 Score=19.18 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=24.2
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
+..++.+..+.++|++.+.+.+++++.+|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 45678888899999999999999998865
No 11
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=56.15 E-value=27 Score=19.23 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=21.9
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhh
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVS 36 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~ 36 (136)
+..+|.+..+.|.|+..+++-++....
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467899999999999999999885543
No 12
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=54.01 E-value=35 Score=20.50 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=16.1
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
-...++.+..+.|+|++.+.+..+++...|
T Consensus 33 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 33 AWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344555555555666666655555555443
No 13
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=51.60 E-value=26 Score=16.31 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=23.1
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
+..+|.+..+.++|++.+.+....+...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 45678888889999999999988876543
No 14
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=50.41 E-value=65 Score=21.64 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHhhCC-----CCCCccchhcccchhhhHHHHHHHHHHHH
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIVSAS-----TSEEPPLRRLQERHRRTARLLEYRLKIEA 67 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~~~~-----s~EERnLrR~qk~~~~~~~i~~yr~kie~ 67 (136)
.++..|--+++.|||++.+.+=++.++.-. .+++-- .......|.+|..+++.
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~------k~~yr~ki~eY~~Rae~ 65 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT------RLIYEQMINEYKRRIEV 65 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH------HHHHHHHHHHHHHHHHH
Confidence 466778888999999999988888776411 222210 12345567777777665
No 15
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=47.47 E-value=41 Score=20.37 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
.+..+|...-+.|+|++.+.+.++.++.+|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p 34 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP 34 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 456788999999999999999999998865
No 16
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=40.72 E-value=46 Score=19.96 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=22.3
Q ss_pred ChHHHHHHHHhHHHhcCHHHHHHHHHHHHhhC
Q 045389 6 PREENVYMAKLAEQAEWYEKMVQYMEKVIVSA 37 (136)
Q Consensus 6 ~re~~v~~AklaeqaeRy~dMv~~mk~~v~~~ 37 (136)
+.+-.+.+|++.-+.|+|++....++++...+
T Consensus 24 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 24 NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44556677888888888888888877776553
No 17
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=34.31 E-value=85 Score=19.04 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=26.0
Q ss_pred HHHHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 8 EENVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 8 e~~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
.-...+|.+..+.|+|++.+..+..+++.+|
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3456788899999999999999999988766
No 18
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=32.96 E-value=57 Score=24.30 Aligned_cols=34 Identities=18% Similarity=0.423 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhcccCCcCCc-------chHHHHhhhc
Q 045389 68 ELTEICSGILKLLDQKLVPTAAAA-------DSKVFYLKMK 101 (136)
Q Consensus 68 EL~~iC~dil~lid~~Lip~~~~~-------eskVFy~KmK 101 (136)
=+.++|+||+.+|...|-.....+ -.|-||+|.-
T Consensus 76 sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~m 116 (131)
T cd05493 76 SVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLM 116 (131)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHH
Confidence 367899999999988774332222 2567888654
No 19
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.79 E-value=46 Score=21.06 Aligned_cols=22 Identities=18% Similarity=0.136 Sum_probs=15.2
Q ss_pred HHhHHHhcCHHHHHHHHHHHHh
Q 045389 14 AKLAEQAEWYEKMVQYMEKVIV 35 (136)
Q Consensus 14 AklaeqaeRy~dMv~~mk~~v~ 35 (136)
..-.=|.|+|++..+|++.++.
T Consensus 30 I~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3334467889998888888764
No 20
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=30.67 E-value=1e+02 Score=19.62 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=14.5
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHH
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEK 32 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~ 32 (136)
....|+..-+.|+|++.++.+++
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHhc
Confidence 34457777777777777776654
No 21
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=28.65 E-value=1.2e+02 Score=21.69 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=13.8
Q ss_pred HHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 12 YMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 12 ~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
..+...-+.|+|++.+.+...++..+|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P 55 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP 55 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 344445555555555555555554444
No 22
>PRK15443 pduE propanediol dehydratase small subunit; Provisional
Probab=28.32 E-value=2.6e+02 Score=21.06 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=30.8
Q ss_pred ChHHHHHHHHhHHHhcCHHHHHHHHHHHHhhCCCCCCccc
Q 045389 6 PREENVYMAKLAEQAEWYEKMVQYMEKVIVSASTSEEPPL 45 (136)
Q Consensus 6 ~re~~v~~AklaeqaeRy~dMv~~mk~~v~~~~s~EERnL 45 (136)
+.+-|...|.+|+.+||.. +..-....+++-.-+++|-|
T Consensus 47 tpetL~~QaqiAe~~Gr~~-la~NfrRAAELt~vpD~rvL 85 (138)
T PRK15443 47 TPETLRMQAQIAEDAGRPQ-LAMNFRRAAELTAVPDDRIL 85 (138)
T ss_pred CHHHHHHHHHHHHHcCCHH-HHHHHHHHHhccCCCHHHHH
Confidence 4678999999999999985 67777777777556667766
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=27.56 E-value=1.1e+02 Score=24.73 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=27.2
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
-..+++++..+.|+|++.+.+.++++..++
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 467889999999999999999999998875
No 24
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=27.00 E-value=1.2e+02 Score=19.50 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=25.4
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
-...++.+..+.|+|+..+...+.++...|
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 467789999999999999999999887655
No 25
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=26.98 E-value=1.2e+02 Score=22.01 Aligned_cols=55 Identities=11% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHHhhcccCCcCCcchHHHHhhhccccccccchhhcccCch-hHHHHHHHHHHHHHHhh
Q 045389 77 LKLLDQKLVPTAAAADSKVFYLKMKGDYLLSLLNLAEFKTGD-ERKVAVENTLNAYKSAQ 135 (136)
Q Consensus 77 l~lid~~Lip~~~~~eskVFy~KmKGDYyR~~~YlAE~~~~~-~~~~~~~~a~~aY~~A~ 135 (136)
|.||...+. .....++-.|-+...|+-|. .+|...++. -+....-.|.+||.+|.
T Consensus 16 L~iied~i~-~h~~~~~~~~lh~~QG~if~---~lA~~ten~d~k~~yLl~sve~~s~a~ 71 (111)
T PF04781_consen 16 LEIIEDLIS-RHGEDESSWLLHRLQGTIFY---KLAKKTENPDVKFRYLLGSVECFSRAV 71 (111)
T ss_pred HHHHHHHHH-HccCCCchHHHHHHHhHHHH---HHHHhccCchHHHHHHHHhHHHHHHHh
Confidence 444543332 22333444488999999999 999877654 46677888899998875
No 26
>cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuc
Probab=26.04 E-value=1.2e+02 Score=25.89 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCcchHHHHhhhc
Q 045389 56 ARLLEYRLKIEAELTEICSGILKLLDQKLVPTAAAADSKVFYLKMK 101 (136)
Q Consensus 56 ~~i~~yr~kie~EL~~iC~dil~lid~~Lip~~~~~eskVFy~KmK 101 (136)
+.++.+..++..+|..+-.++..+....+-|++...-..++|.++.
T Consensus 3 ~~l~~~~~~~~~~~~~l~~~~~~l~g~~fn~~S~~qv~~~L~~~lg 48 (377)
T cd08637 3 EYLEELSEELEKELAELEEEIYELAGEEFNINSPKQLGEVLFEKLG 48 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCC
Confidence 5678899999999999999999988876666655555677776553
No 27
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=25.80 E-value=1.4e+02 Score=19.00 Aligned_cols=28 Identities=29% Similarity=0.260 Sum_probs=23.1
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHhh
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIVS 36 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~~ 36 (136)
+++..|--.+++|+|++.+.+.+..++.
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667777889999999999999888754
No 28
>PF02287 Dehydratase_SU: Dehydratase small subunit; InterPro: IPR003207 This family contains the small subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances [, ].; PDB: 1IWP_M 1MMF_M 1UC4_M 1EEX_M 3AUJ_G 1IWB_M 1DIO_G 1UC5_G 1EGM_G 1EGV_M ....
Probab=24.37 E-value=1e+02 Score=23.16 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=27.8
Q ss_pred ChHHHHHHHHhHHHhcCHHHHHHHHHHHHhhCCCCCCccc
Q 045389 6 PREENVYMAKLAEQAEWYEKMVQYMEKVIVSASTSEEPPL 45 (136)
Q Consensus 6 ~re~~v~~AklaeqaeRy~dMv~~mk~~v~~~~s~EERnL 45 (136)
..+-|...|++|+.+||.. +..-....+++-.-+++|-|
T Consensus 48 tpetL~~QaqIAe~~gR~~-~a~NfrRAAELt~VPD~riL 86 (136)
T PF02287_consen 48 TPETLEMQAQIAESAGRPQ-LARNFRRAAELTAVPDDRIL 86 (136)
T ss_dssp -HHHHHHHHHHHHCTT-HH-HHHHHHHHHCCTTS-HHHHH
T ss_pred CHHHHHHHHHHHHHcCCHH-HHHHHHHHHhhhcCCHHHHH
Confidence 4678999999999999985 67667777666445666666
No 29
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=23.76 E-value=1.5e+02 Score=22.65 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=16.8
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
+..+|-.+.+.|+|++.+.+.+++++..+
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44455555556666666666666655544
No 30
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=23.34 E-value=1.7e+02 Score=18.94 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=23.9
Q ss_pred HHHHHHHHhHHHhcCHHHHHHHHHHHHhh
Q 045389 8 EENVYMAKLAEQAEWYEKMVQYMEKVIVS 36 (136)
Q Consensus 8 e~~v~~AklaeqaeRy~dMv~~mk~~v~~ 36 (136)
..++..|--.+++|+|++.+.+....++.
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677777889999999999999888764
No 31
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.45 E-value=4.1e+02 Score=21.33 Aligned_cols=94 Identities=24% Similarity=0.360 Sum_probs=52.8
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhhCCCCCCccchhcccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccCCc
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVSASTSEEPPLRRLQERHRRTARLLEYRL-KIEAELTEICSGILKLLDQKLVPTA 88 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~~~s~EERnLrR~qk~~~~~~~i~~yr~-kie~EL~~iC~dil~lid~~Lip~~ 88 (136)
.+..||..-.++++++....++.+... |.+| || +.|-..|- +|--. ..-.++.+.+||..
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De-~l----------k~l~~lRLArvq~q-~~k~D~AL~~L~t~----- 152 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQ--TKDE-NL----------KALAALRLARVQLQ-QKKADAALKTLDTI----- 152 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHcc--chhH-HH----------HHHHHHHHHHHHHH-hhhHHHHHHHHhcc-----
Confidence 467888888999999999888887532 3333 33 22222211 11111 12234566666641
Q ss_pred CCcchHHHHhhhccccccccchhhcccCchhHHHHHHHHHHHHHHhh
Q 045389 89 AAADSKVFYLKMKGDYLLSLLNLAEFKTGDERKVAVENTLNAYKSAQ 135 (136)
Q Consensus 89 ~~~eskVFy~KmKGDYyR~~~YlAE~~~~~~~~~~~~~a~~aY~~A~ 135 (136)
.++.=.--+.-|+||-+- ..|+ .+.|..+|++|.
T Consensus 153 ~~~~w~~~~~elrGDill--------~kg~-----k~~Ar~ay~kAl 186 (207)
T COG2976 153 KEESWAAIVAELRGDILL--------AKGD-----KQEARAAYEKAL 186 (207)
T ss_pred ccccHHHHHHHHhhhHHH--------HcCc-----hHHHHHHHHHHH
Confidence 111112234678899863 4455 455788888875
No 32
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=22.44 E-value=1.8e+02 Score=18.52 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHhh
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIVS 36 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~~ 36 (136)
.++-.|--+++.|.|++.+.+....++.
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777788899999999999888764
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=22.00 E-value=1.1e+02 Score=23.87 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=25.6
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
=++.+|.+..+.|++++.+.++++++..+|
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P 177 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDP 177 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 356788999999999999999999998866
No 34
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.93 E-value=1.3e+02 Score=24.85 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=26.9
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
-++-.|.+-++.+.|++.++-.|++.+..|
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 355669999999999999999999999877
No 35
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=21.49 E-value=1.7e+02 Score=16.58 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhhCC
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVSAS 38 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~~~ 38 (136)
+..+|.+.-+.|+|++.+.....++...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 31 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP 31 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 45678888889999999999998877644
No 36
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.95 E-value=2.3e+02 Score=17.71 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.4
Q ss_pred HHHHHHHhHHHhcCHHHHHHHHHHHHh
Q 045389 9 ENVYMAKLAEQAEWYEKMVQYMEKVIV 35 (136)
Q Consensus 9 ~~v~~AklaeqaeRy~dMv~~mk~~v~ 35 (136)
.++..|--+++.|.|++.+++=+..++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888899999999999988777664
No 37
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=20.82 E-value=82 Score=17.37 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhcccCCcCC
Q 045389 69 LTEICSGILKLLDQKLVPTAAA 90 (136)
Q Consensus 69 L~~iC~dil~lid~~Lip~~~~ 90 (136)
.-.+|..++..+++.|-.+.+.
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~ 24 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTE 24 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHH
T ss_pred cchHHHHHHHHHHHHHHcCccH
Confidence 3568999999998877544433
No 38
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=20.49 E-value=1.7e+02 Score=18.04 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=20.8
Q ss_pred HHHHHHhHHHhcCHHHHHHHHHHHHhh
Q 045389 10 NVYMAKLAEQAEWYEKMVQYMEKVIVS 36 (136)
Q Consensus 10 ~v~~AklaeqaeRy~dMv~~mk~~v~~ 36 (136)
+.-++.+....|+|++.++++.+.++.
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345677777889999999999887653
No 39
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=20.22 E-value=1e+02 Score=24.48 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045389 63 LKIEAELTEICSGILKLL 80 (136)
Q Consensus 63 ~kie~EL~~iC~dil~li 80 (136)
.+=..||+.||+|+|.=+
T Consensus 188 ~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 188 TKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334479999999998643
Done!