BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045393
(580 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 147/323 (45%), Gaps = 32/323 (9%)
Query: 38 LHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMK 97
LHMA R + +V + +L+ + + + K D+T LH AARIG +V +++
Sbjct: 51 LHMAARAGHTEVAKYLLQNK---------AKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
Query: 98 YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157
N P + G+TPLH A H + L+EK++ + K +
Sbjct: 102 -----NNANP--------NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF- 147
Query: 158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKEL 217
TPL +A +A ++++ + + LT +H V N DI VK+L
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGK--NGLTPLHVAVHHNNLDI-VKLLLPRGGS 204
Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKL 277
W+ PLH AA V++A+ LL+ A G TPLHLAA+ G +++ L
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVAL 263
Query: 278 LINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
L++K + + N S + LH+ A+ G+ + +++ M ++ R G TPLH+A+
Sbjct: 264 LLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVAS 319
Query: 338 -MGLHSDVVFTLSRHKSVNIRAK 359
G V F L VN + K
Sbjct: 320 HYGNIKLVKFLLQHQADVNAKTK 342
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
TPLH+A+ G L ++K L+ + + N + LH+AA+ G+ + ++L++ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQN---KA 71
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVV 345
+N ++ TPLH AA H+++V
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMV 96
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 85.5 bits (210), Expect = 8e-17, Method: Composition-based stats.
Identities = 52/120 (43%), Positives = 76/120 (63%), Gaps = 5/120 (4%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH AA +G++++ + LLE + K D NG TPLHLAA NG L+V+KLL+ D
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 286 IEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
+ ++ + R+ LH+AA++G+ +V +L E +N D+NG TPLHLAA H +VV
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 10/123 (8%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
NG TPLHLAA NG L+V+KLL+ D + ++ + R+ LH+AA++G+ +V +L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEI 371
+N D+NG TPLHLAA H +VV L VN + KN H A N LE+
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 372 AEI 374
++
Sbjct: 117 VKL 119
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLA 266
+VK+L ++ D + R PLH AA +G++++ + LLE + K D NG TPLHLA
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLA 75
Query: 267 AENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
A NG L+V+KLL+ D + ++ + R+ LH+AA++G+ +V +L +
Sbjct: 76 ARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 38/158 (24%)
Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE 181
G TPLH A N H V+++L+E + ++ +K +TPL +A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLA------------------ 42
Query: 182 SLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA 241
R + +VK+L ++ D + R PLH AA +G++++
Sbjct: 43 ------------------ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 242 QRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
+ LLE + K D NG TPLHLAA NG L+V+KLL+
Sbjct: 85 KLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLL 121
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 50/169 (29%)
Query: 78 TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRV 137
T LH+AAR G +V +++ VN D G TPLH A N H V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEV 50
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHF 197
+++L+E + ++ +K +TPL +A
Sbjct: 51 VKLLLEAGADVNAK-DKNGRTPLHLA---------------------------------- 75
Query: 198 VVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
R + +VK+L ++ D + R PLH AA +G++++ + LLE
Sbjct: 76 --ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 23/130 (17%)
Query: 34 GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
G LH+A R + +V++ +L + + K+ T LH+AAR G +V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG---------ADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 94 EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
+++ VN D G TPLH A N H V+++L+E + ++ +
Sbjct: 53 LLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-D 98
Query: 154 KAYQTPLSIA 163
K +TPL +A
Sbjct: 99 KNGRTPLHLA 108
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 22/110 (20%)
Query: 34 GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
G LH+A R + +V++ +L + + K+ T LH+AAR G +V
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAG---------ADVNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 94 EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVE 143
+++ VN D G TPLH A N H V+++L+E
Sbjct: 86 LLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 72.0 bits (175), Expect = 8e-13, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267
VK L N ++ D R PLHYAA G+ ++ + L+ + + K D +G TPLH AA
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDR 327
+ G +++KLLI+K D + +++ R+ LH AAK G+ IV ++ +N D
Sbjct: 79 KEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDS 134
Query: 328 NGNTPLHLAAMGLHSDVVFTLSRH 351
+G TPL LA + ++V L +
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 38/161 (23%)
Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
+D +G TPLH A HK ++++L+ K + D D
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLISKGA------------------DVNAKD------- 67
Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
D T +H+ ++ + +VK+L + ++ D R PLHYAA G+
Sbjct: 68 -----------SDGRTPLHYAA-KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 115
Query: 238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
++ + L+ + + D +G TPL LA E+G +++KLL
Sbjct: 116 KEIVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 23/163 (14%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ + L+E +G++ ++K L + S G LH A + ++++++ ++ +
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG--- 60
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ + K+ T LH AA+ G + IV ++ VN D
Sbjct: 61 ------ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA-------------KDS 101
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+G TPLH A HK ++++L+ K + ++ + +TPL +A
Sbjct: 102 DGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG-RTPLDLA 143
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267
VK L N ++ D R PLH+AA +G+ ++ + L+ + + K D +G TPLH AA
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDR 327
ENG +V+KLLI+K D + +++ R+ LH AA++G+ +V ++ +N D
Sbjct: 79 ENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDS 134
Query: 328 NGNTPLHLAAMGLHSDVVFTLSRH 351
+G TPL LA + +VV L +
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 38/161 (23%)
Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
+D +G TPLH+A N HK V+++L+ K + ++ + +TPL A + ++ +I
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG-RTPLHHAAENGHKEVVKLLIS 91
Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
K + ++ D R PLH+AA +G+
Sbjct: 92 KGAD------------------------------------VNAKDSDGRTPLHHAAENGH 115
Query: 238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
++ + L+ + + D +G TPL LA E+G +V+KLL
Sbjct: 116 KEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Query: 222 DWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
D R PLHYAA +G+ ++ + LL + +D +G TPLH AAENG +++KLL++K
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 282 YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLH 341
D +++ R+ LH AA++G+ IV +L N D +G TPL LA +
Sbjct: 93 GADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---NTSDSDGRTPLDLAREHGN 148
Query: 342 SDVVFTLSRH 351
++V L +
Sbjct: 149 EEIVKLLEKQ 158
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
AA +GN + LLE D +G TPLH AAENG +++KLL++K D +++
Sbjct: 11 AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NAKDS 68
Query: 292 SDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
R+ LH AA++G+ IV +L N D +G TPLH AA H ++V
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADP---NAKDSDGRTPLHYAAENGHKEIV 119
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 38/161 (23%)
Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
+D +G TPLH A N HK ++++L+ K + P++ + +TPL A + +I ++
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG-RTPLHYAAENGHKEIVKLLLS 91
Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
K + + D R PLHYAA +G+
Sbjct: 92 KGADP------------------------------------NAKDSDGRTPLHYAAENGH 115
Query: 238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
++ + LL + D +G TPL LA E+G +++KLL
Sbjct: 116 KEIVKLLLSKGAD-PNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 23/163 (14%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ + L+E +G++ ++K L + S G LH A ++++++ +L +
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG--- 60
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ K+ T LH AA G + IV ++ G P D
Sbjct: 61 ------ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK-------GADP------NAKDS 101
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+G TPLH A N HK ++++L+ K + P++ + +TPL +A
Sbjct: 102 DGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG-RTPLDLA 143
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
NG TPLHLAA NG L+V+KLL+ D + ++ + R+ LH+AA++G+ +V +L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVV 345
+N D+NG TPLHLAA H +VV
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVV 84
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH AA +G++++ + LLE + K D NG TPLHLAA NG L+V+KLL+ D
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 286 IEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
+ ++ + R+ LH+AA++G+ +V +L +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLA 266
+VK+L ++ D + R PLH AA +G++++ + LLE + K D NG TPLHLA
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLA 75
Query: 267 AENGKLKVLKLLI 279
A NG L+V+KLL+
Sbjct: 76 ARNGHLEVVKLLL 88
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 22/110 (20%)
Query: 34 GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
G LH+A R + +V++ +L + + K+ T LH+AAR G +V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG---------ADVNAKDKNGRTPLHLAARNGHLEVVK 52
Query: 94 EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVE 143
+++ VN D G TPLH A N H V+++L+E
Sbjct: 53 LLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 78 TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRV 137
T LH+AAR G +V +++ VN D G TPLH A N H V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEV 50
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIA 163
+++L+E + ++ +K +TPL +A
Sbjct: 51 VKLLLEAGADVNAK-DKNGRTPLHLA 75
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
+R+PLH AA +G+V + L++ + + + TPL AAEN L+ +K LI K
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVKYLI-KAGA 68
Query: 285 AIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344
++ ++ + LH+AAK G++ +V ++L + +M+ +N D G TP+ A H D+
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDL 126
Query: 345 V-FTLSRHKSVNIRAKN-----HSARSNTALEIAEI 374
V LS+ +NIR H A + ++IAEI
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 8/204 (3%)
Query: 157 QTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKE 216
++PL A +A DI C ++ ++ +++T L+ N+ VK L
Sbjct: 12 RSPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLME--AAENNHLEAVKYLIKAGA 68
Query: 217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLK 276
L+D D LH AA G+ ++ Q LL + +D G TP+ A E + ++K
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
LL++K D I IR+N + LH AA G +I +L + + +N+ +G++PLH+A
Sbjct: 129 LLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI---HGDSPLHIA 184
Query: 337 AMGLHSD-VVFTLSRHKSVNIRAK 359
A D VV LSR V ++ K
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLKNK 208
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
N +PLH AAE G + + +L+ + I+ + R+ L AA++ + V +++++
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
L++ D G+T LHLAA H +VV L + +++ ++
Sbjct: 69 ---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 4/160 (2%)
Query: 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
+L D EG+T LH A H V++ L+ + + + TP+ A + + D+
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 173 CFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYA 232
++ K + R +E +H+ DI +IL K + ++ H +PLH A
Sbjct: 128 KLLLSKGSDI--NIRDNEENICLHWAAFSGCVDI-AEILLAAKCDLHAVNIHGDSPLHIA 184
Query: 233 AASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKL 272
A L + K GETPL A+ N ++
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLKNK-EGETPLQCASLNSQV 223
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 5/178 (2%)
Query: 124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESL 183
TPL A N H ++ L++ ++ + T L +A ++ +++ +
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 184 NTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
N +I + ++ D +VK+L + I+ D + LH+AA SG V +A+
Sbjct: 105 NCQDDGGWTPMI-WATEYKHVD-LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 244 LLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAA 301
LL L + + +G++PLH+AA + + L +++ D + ++N + L A+
Sbjct: 163 LLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCAS 218
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 10/191 (5%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
+SL TD + T LH A + H ++ L++ VP + + A +PL IA A ++I
Sbjct: 31 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
++ K + +N + T +H+ + ++I V +L G N D D ++ +
Sbjct: 90 VKALLGKGAQ-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAM 144
Query: 230 HYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
H AAA GN+KM LL K +D G TPLHLA + +++ KLL+++ +I I
Sbjct: 145 HRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIE 202
Query: 290 NNSDRSILHVA 300
N +++ L VA
Sbjct: 203 NKEEKTPLQVA 213
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 42/159 (26%)
Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
+K L R D R LH+A ++G+ ++ + LL+ + K D G +PLH+AA G+ +
Sbjct: 30 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDE 88
Query: 274 VLKLLINK-----------------------------------YPDAIEIRNNSDRSILH 298
++K L+ K PDA +++ + + +H
Sbjct: 89 IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAMH 145
Query: 299 VAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
AA GN ++ +L + N+ D GNTPLHLA
Sbjct: 146 RAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHLAC 181
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 10/191 (5%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
+SL TD + T LH A + H ++ L++ VP + + A +PL IA A ++I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
++ K + +N + T +H+ + ++I V +L G N D D ++ +
Sbjct: 89 VKALLGKGAQ-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
H AAA GN+KM LL K +D G TPLHLA + +++ KLL+++ +I I
Sbjct: 144 HRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIE 201
Query: 290 NNSDRSILHVA 300
N +++ L VA
Sbjct: 202 NKEEKTPLQVA 212
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 42/159 (26%)
Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
+K L R D R LH+A ++G+ ++ + LL+ + K D G +PLH+AA G+ +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDE 87
Query: 274 VLKLLINK-----------------------------------YPDAIEIRNNSDRSILH 298
++K L+ K PDA +++ + + +H
Sbjct: 88 IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAMH 144
Query: 299 VAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
AA GN ++ +L + N+ D GNTPLHLA
Sbjct: 145 RAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHLAC 180
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + K D +G
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGY 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
TPLHLAA G L+++++L+ D + ++ + LH+AA+ G+ IV +L++
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 126
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
+N D+ G TP LA H D+ L +
Sbjct: 127 -VNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
+D +G TPLHLAA G L+++++L+ D + ++ + LH+AA+ G+ IV +L+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAE 373
+ +N D++G TPLHLAA H ++V L + ++ A++ ++ L I E
Sbjct: 90 AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAIRE 144
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G LH+A R + +++ +L+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG--- 58
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ + K+ T LH+AAR G IV ++K VN D
Sbjct: 59 ------ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-------------KDK 99
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
+G TPLH A H ++ +L+ K + +K +TP +AI DIA
Sbjct: 100 DGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTPFDLAIREGHEDIA 150
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAKN-----HSARSNTALEIAEIT 375
+N D++G TPLHLAA H ++V L + + VN + K+ H A LEI E+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 376 RANGKEI 382
G ++
Sbjct: 88 LKAGADV 94
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267
VK L N ++ D + PLH AA +G+ ++ + LL + +D +G+TPLHLAA
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDR 327
ENG +V+KLL+++ D +++ ++ LH+AA++G+ +V +L N D
Sbjct: 79 ENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NTSDS 134
Query: 328 NGNTPLHLAAMGLHSDVVFTLSRH 351
+G TPL LA + +VV L +
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 38/161 (23%)
Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
+D +G TPLH A N HK V+++L+ + + P++ + +TPL +A +
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG-KTPLHLAAE------------ 79
Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
+ +VK+L + + D + PLH AA +G+
Sbjct: 80 ------------------------NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH 115
Query: 238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
++ + LL + D +G TPL LA E+G +V+KLL
Sbjct: 116 KEVVKLLLSQGAD-PNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ + L+E +G++ ++K L + S G LH+A +++V++ +L Q
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG--- 60
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ K+ +T LH+AA G + +V ++ G P D
Sbjct: 61 ------ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ-------GADP------NAKDS 101
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+G TPLH A N HK V+++L+ + + P++ + +TPL +A
Sbjct: 102 DGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG-RTPLDLA 143
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + K D +G
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGY 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
TPLHLAA G L+++++L+ D + ++ + LH+AA+ G+ IV +L++
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 126
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
+N D+ G TP LA + D+ L +
Sbjct: 127 -VNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G LH+A R + +++ +L+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG--- 58
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ + K+ T LH+AAR G IV ++K VN D
Sbjct: 59 ------ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-------------KDK 99
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
+G TPLH A H ++ +L+ K + +K +TP +AID DIA
Sbjct: 100 DGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTPFDLAIDNGNEDIA 150
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
D T +H R+ + +V++L ++ D PLH AA G++++ + LL+
Sbjct: 34 DGYTPLHLAA-REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 250 RLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309
+ K D +G TPLHLAA G L+++++L+ D + ++ ++ +A +GN +I
Sbjct: 93 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAIDNGNEDIA 150
Query: 310 SFILRS 315
+ ++
Sbjct: 151 EVLQKA 156
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAKN-----HSARSNTALEIAEIT 375
+N D++G TPLHLAA H ++V L + + VN + K+ H A LEI E+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 376 RANGKEI 382
G ++
Sbjct: 88 LKAGADV 94
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
+SL TD + T LH A + H ++ L++ VP + + A +PL IA A ++I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
++ K +N + T +H+ + ++I V +L G N + D D +
Sbjct: 89 VKALLVKGAH-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
H AAA GN+KM LL K +D G TPLHLA + +++ K L+ + +I I
Sbjct: 144 HRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIE 201
Query: 290 NNSDRSILHVA 300
N +++ L VA
Sbjct: 202 NKEEKTPLQVA 212
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 36/156 (23%)
Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
+K L R D R LH+A ++G+ ++ + LL+ + K D G +PLH+AA G +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGXDE 87
Query: 274 VLKLLI-----------------------NKYPDAI---------EIRNNSDRSILHVAA 301
++K L+ N++ A+ + +++ D + +H AA
Sbjct: 88 IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147
Query: 302 KHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
GN +V +L + N+ D GNTPLHLA
Sbjct: 148 AKGNLKMVHILLF---YKASTNIQDTEGNTPLHLAC 180
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
+SL TD + T LH A + H ++ L++ VP + + A +PL IA A ++I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
++ K +N + T +H+ + ++I V +L G N + D D +
Sbjct: 89 VKALLVKGAH-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
H AAA GN+KM LL K +D G TPLHLA + +++ K L+ + +I I
Sbjct: 144 HRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIE 201
Query: 290 NNSDRSILHVA 300
N +++ L VA
Sbjct: 202 NKEEKTPLQVA 212
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 36/156 (23%)
Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLK 273
+K L R D R LH+A ++G+ ++ + LL+ + K D G +PLH+AA G+ +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRDE 87
Query: 274 VLKLLI-----------------------NKYPDAI---------EIRNNSDRSILHVAA 301
++K L+ N++ A+ + +++ D + +H AA
Sbjct: 88 IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147
Query: 302 KHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
GN +V +L + N+ D GNTPLHLA
Sbjct: 148 AKGNLKMVHILLF---YKASTNIQDTEGNTPLHLAC 180
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCN-- 258
R D V+IL N ++ DW PLH AA +G++++ + LL+ Y D N
Sbjct: 23 RAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK------YGADVNAW 76
Query: 259 ---GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
G TPLHLAA+NG L+++++L+ D + ++ + LH+AA G+ IV +L+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
+N D+ G T ++ + D+ L +
Sbjct: 136 GAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNI 356
LH+AAK G+ IV +L+ +N D G TPLHLAA H ++V L +H + ++
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGAD---VNAWDNYGATPLHLAADNGHLEIVEVLLKHGA-DV 106
Query: 357 RAKN-------HSARSNTALEIAEITRANGKEI 382
AK+ H A + LEI E+ G ++
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 75 MDETALHIAARIGDRAIVSEIMKYLPAVN---QVGPAP-----------VLESLFR---- 116
+ T LH+AA+ G IV ++KY VN G P ++E L +
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD 105
Query: 117 --MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
D EG TPLH A + H ++ +L+ K + +K +T I+ID D+A
Sbjct: 106 VNAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 48/166 (28%)
Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIID 177
TD G+TPLH A H ++ +L++ + +++ N TPL +A D
Sbjct: 43 TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG-ATPLHLAADN----------- 90
Query: 178 KSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
L ++ V+++ D+ K D+ PLH AA G+
Sbjct: 91 ------------GHLEIVE-VLLKHGADVNAK------------DYEGFTPLHLAAYDGH 125
Query: 238 VKMAQRLLEESKRLAYKRDCN-----GETPLHLAAENGKLKVLKLL 278
+++ + LL+ Y D N G+T ++ +NG + ++L
Sbjct: 126 LEIVEVLLK------YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
+N D G+TPLHLAA H ++V L ++ + ++ A + H A N LEI E+
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA-DVNAWDNYGATPLHLAADNGHLEIVEV 98
Query: 375 TRANGKEI 382
+G ++
Sbjct: 99 LLKHGADV 106
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
D NG TPLHLAA NG+L+++++L+ D + +++ + LH+AA G+ IV +L+
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+N DR G TPLHLAA+ ++V L +H + ++ A++ A TA +I+
Sbjct: 95 GAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA-DVNAQD--ALGLTAFDIS 145
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 205 DIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLH 264
D V+IL N ++ D + PLH AAA+G +++ + LL+ + D G TPLH
Sbjct: 19 DDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLH 77
Query: 265 LAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
LAA +G L+++++L+ D + + + + LH+AA G IV +L+
Sbjct: 78 LAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
LT +H +I V++L N ++ D PLH AA G++++ + LL+ +
Sbjct: 40 LTPLHLAAANGQLEI-VEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 252 -AYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
AY R G TPLHLAA +G+L+++++L+ D
Sbjct: 99 NAYDR--AGWTPLHLAALSGQLEIVEVLLKHGAD 130
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
+N D NG TPLHLAA ++V L ++ + ++ A + H A + LEI E+
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGA-DVNASDSAGITPLHLAAYDGHLEIVEV 90
Query: 375 TRANGKEIQKH 385
+G ++ +
Sbjct: 91 LLKHGADVNAY 101
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA++G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGI 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L+++++L+ D + +N + LH+AAK+G+ IV +L+
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
D +G TPLHLAA NG L+++++L+ D + + + + LH+AA G+ IV +L+
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAK 359
+N D +G+TPLHLAA H ++V L +H + VN + K
Sbjct: 103 GAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
D T +H + +I V++L N ++ D PLH AAA+G++++ + LL+
Sbjct: 46 DGYTPLHLAASNGHLEI-VEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 250 RL-AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNI 308
+ AY D G TPLHLAA+ G L+++++L+ D + ++ ++ ++ +GN ++
Sbjct: 105 DVNAYDND--GHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDL 161
Query: 309 VSFI 312
+
Sbjct: 162 AEIL 165
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + + G LH+A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ + +L T LH+AA G IV ++K+ VN D
Sbjct: 71 ------ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAY-------------DN 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
+G+TPLH A H ++ +L+ K + +K +T I+ID D+A
Sbjct: 112 DGHTPLHLAAKYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
+N D +G TPLHLAA H ++V L + ++ A + H A + LEI E+
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIVEV 98
Query: 375 TRANGKEIQKH 385
+G ++ +
Sbjct: 99 LLKHGADVNAY 109
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
+D +G TPLHLAA G L+++++L+ D + ++ + LH+AA+ G+ IV +L+
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
+ +N D++G TPLHLAA H ++V L
Sbjct: 102 AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVL 132
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + K D +G
Sbjct: 23 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGY 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
TPLHLAA G L+++++L+ D + ++ + LH+AA+ G+ IV +L++
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
D T +H + +I+ +L + ++ D PLH AA G++++ + LL+
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 250 RLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309
+ K D +G TPLHLAA G L+++++L+ D + ++ ++ ++ +GN ++
Sbjct: 105 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISIDNGNEDLA 162
Query: 310 SFI 312
+
Sbjct: 163 EIL 165
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G LH+A R + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG--- 70
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ + K+ T LH+AAR G IV ++K VN D
Sbjct: 71 ------ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-------------AKDK 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
+G TPLH A H ++ +L+ K + +K +T I+ID D+A
Sbjct: 112 DGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAKN-----HSARSNTALEIAEIT 375
+N D++G TPLHLAA H ++V L + + VN + K+ H A LEI E+
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 376 RANGKEI 382
G ++
Sbjct: 100 LKAGADV 106
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N + D + R PLH AAA G++++ + LL + D NG
Sbjct: 11 RAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGT 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
TPLHLAA G L+++++L+ KY + ++ + + L++AA G+ IV +L+
Sbjct: 70 TPLHLAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD-- 126
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 127 -VNAQDKFGKTAFDIS 141
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLV 325
AA G+ +++L+ DA ++ R+ LH+AA G+ IV +LR+ +N V
Sbjct: 9 AARAGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD---VNAV 64
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHS-------ARSNTALEIAEITRAN 378
D NG TPLHLAA H ++V L ++ + ++ AK+ + A LEI E+ +
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGA-DVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 379 GKEIQ 383
G ++
Sbjct: 124 GADVN 128
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 25/173 (14%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQ-QDF 59
+ ++LLE R G + +++ L + G LHMA + +++ +LR D
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 60 IALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTD 119
A+ + + T LH+AA +G IV ++KY VN D
Sbjct: 62 NAVDTNGT----------TPLHLAASLGHLEIVEVLLKYGADVNA-------------KD 98
Query: 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
G TPL+ A H ++ +L+ K + +K +T I+ID D+A
Sbjct: 99 ATGITPLYLAAYWGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDIGNEDLA 150
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G+ ++ + LL+ + RD +G
Sbjct: 23 RAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGW 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
TPLHLAA+NG L+++++L+ KY + ++ + LH+AA G+ IV +L+
Sbjct: 82 TPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
D G TPLHLAA G +++++L+ D + R+ + LH+AA +G+ IV +L+
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+N D G TPLHLAA H ++V L +H ++ A++ + TA +I+
Sbjct: 102 YGAD---VNAQDAYGLTPLHLAADRGHLEIVEVLLKH-GADVNAQDKFGK--TAFDIS 153
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G+ LH+A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
H + + ++ T LH+AA G IV ++KY VN D
Sbjct: 69 ----HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN-------------AQDA 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
G TPLH A H ++ +L+ K + +K +T I+ID D+A
Sbjct: 112 YGLTPLHLAADRGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAKN-----HSARSNTALEIAEIT 375
+N D G+TPLHLAA H ++V L +H + VN R + H A N LEI E+
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 376 RANGKEI 382
G ++
Sbjct: 100 LKYGADV 106
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 9/107 (8%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPD--AIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
D +G TPLHLAA G L+++++L+ D AI+I ++ LH+AA G+ IV +L
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTP---LHLAALIGHLEIVEVLL 100
Query: 314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAK 359
+ +N VD G+TPLHLAA+ H ++V L +H + VN + K
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L+++++L+ D + D LH+AA G+ IV +L+
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTP-LHLAAIMGHLEIVEVLLK 134
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + + G LH+A + + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
H + + ++ T LH+AA IG IV ++K+ VN V D
Sbjct: 69 ----HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-------------DT 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
G+TPLH A H ++ +L+ K + +K +T I+ID D+A
Sbjct: 112 WGDTPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
LT +H + +I V++L + ++ +D PLH AA G++++ + LL+ +
Sbjct: 48 LTPLHLAATYGHLEI-VEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF 311
D G+TPLHLAA G L+++++L+ D + ++ ++ ++ +GN ++
Sbjct: 107 -NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 312 ILR 314
+ +
Sbjct: 165 LQK 167
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLV 325
AA G+ +++L+ D + + S + LH+AA +G+ IV +L+ +N +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD---VNAI 76
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEITRAN 378
D G+TPLHLAA+ H ++V L +H + ++ A + H A LEI E+ +
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGA-DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 379 GKEIQ 383
G ++
Sbjct: 136 GADVN 140
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPD--AIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
D +G TPLHLAA G L+++++L+ D AI+I ++ LH+AA G+ IV +L
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTP---LHLAALIGHLEIVEVLL 100
Query: 314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+ +N VD G+TPLHLAA+ H ++V L +H + ++ A++ + TA +I+
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGK--TAFDIS 153
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + + G LH+A + + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
H + + ++M T LH+AA IG IV ++K+ VN V D
Sbjct: 69 ----HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-------------DT 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
G+TPLH A H ++ +L+ K + +K +T I+ID D+A
Sbjct: 112 WGDTPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L+++++L+ D + D LH+AA G+ IV +L+
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTP-LHLAAIMGHLEIVEVLLK 134
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
LT +H + +I V++L + ++ +D PLH AA G++++ + LL+ +
Sbjct: 48 LTPLHLAATYGHLEI-VEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF 311
D G+TPLHLAA G L+++++L+ D + ++ ++ ++ +GN ++
Sbjct: 107 -NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 312 ILR 314
+ +
Sbjct: 165 LQK 167
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRH----KSVNIRAKN--HSARSNTALEIAEIT 375
+N D +G TPLHLAA H ++V L +H +++I H A LEI E+
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 376 RANGKEIQ 383
+G ++
Sbjct: 100 LKHGADVN 107
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D + PLH AA G++++ + LL+ + D +G
Sbjct: 23 RAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV-NALDFSGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
TPLHLAA+ G L+++++L+ KY + + + LH+AA G+ IV +L+
Sbjct: 82 TPLHLAAKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQ-QDF 59
+ ++LLE R G + +++ L + G+ LH+A R + +++ +L+ D
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 60 IALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTD 119
AL S T LH+AA+ G IV ++KY VN D
Sbjct: 74 NALDFSGS----------TPLHLAAKRGHLEIVEVLLKYGADVN-------------ADD 110
Query: 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
G+TPLH A H ++ +L+ K + +K +T I+ID D+A
Sbjct: 111 TIGSTPLHLAADTGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLV 325
AA G+ +++L+ D + + + LH+AA+ G+ IV +L++ +N +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD---VNAL 76
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEITRAN 378
D +G+TPLHLAA H ++V L ++ + ++ A + H A LEI E+
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGA-DVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 379 GKEIQ 383
G ++
Sbjct: 136 GADVN 140
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D+ PLH AA G++++ + LL+ + K D G
Sbjct: 23 RAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGV 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
TPLHLAA G L+++++L+ D + ++ + LH+AAK G+ IV +L++
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 7/118 (5%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
RD G TPLHLAA G L+++++L+ D + +++ + LH+AA+ G+ IV +L+
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+ +N D +G TPLHLAA H ++V L ++ ++ A++ + TA +I+
Sbjct: 102 NGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKN-GADVNAQDKFGK--TAFDIS 153
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G LH+A F + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ + K+ + T LH+AAR G IV ++K VN +D
Sbjct: 71 ------ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN-------------ASDS 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
G TPLH A H ++ +L+ K+ + +K +T I+ID D+A
Sbjct: 112 HGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLA 266
+V++L N ++ D PLH AA G++++ + LL+ + D +G TPLHLA
Sbjct: 62 IVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLA 120
Query: 267 AENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
A+ G L+++++L+ D + ++ ++ ++ +GN ++ +
Sbjct: 121 AKRGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
+T +H R + +I V++L N ++ D H PLH AA G++++ + LL+ +
Sbjct: 81 VTPLHLAARRGHLEI-VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLL 278
+D G+T ++ +NG + ++L
Sbjct: 140 -NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
+N D G TPLHLAA H ++V L ++ ++ AK+ H A LEI E+
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKN-GADVNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 375 TRANGKEIQ 383
NG ++
Sbjct: 99 LLKNGADVN 107
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ +D PLH AA SG++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGF 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L+++++L+ KY + + + + LH+AA G+ IV +L+
Sbjct: 82 TPLHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
D G TPLHLAA +G L+++++L+ D ++ + + LH+AA G+ IV +L+
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+N D G+TPLHLAA H ++V L ++ + ++ A++ + TA +I+
Sbjct: 103 GAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFGK--TAFDIS 153
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
LT +H + + +I V++L + +D D + PLH AA +G++++ + LL+ +
Sbjct: 48 LTPLHLAAVSGHLEI-VEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN 305
D G TPLHLAA+ G L+++++L+ KY + ++ ++ ++ +GN
Sbjct: 107 N-AFDMTGSTPLHLAADEGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGN 158
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G LH+A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
H + + ++ T LH+AA G IV ++KY VN D+
Sbjct: 69 ----HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-------------DM 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
G+TPLH A H ++ +L+ K + +K +T I+ID D+A
Sbjct: 112 TGSTPLHLAADEGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
+N VD G TPLHLAA+ H ++V L +H + ++ A + H A LEI E+
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA-DVDAADVYGFTPLHLAAMTGHLEIVEV 98
Query: 375 TRANGKEI 382
G ++
Sbjct: 99 LLKYGADV 106
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
D G TPLHL NG L+++++L+ KY + + S + LH+AA G+ IV +L+
Sbjct: 44 DWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+N +D G TPLHLAA H ++V L ++ + ++ A++ + TA +I+
Sbjct: 103 GAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-DVNAQDKFGK--TAFDIS 153
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ DW PLH +G++++ + LL+ + + D +G
Sbjct: 23 RAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGW 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L+++++L+ KY + + + LH+AA+ G+ IV +L+
Sbjct: 82 TPLHLAAYRGHLEIVEVLL-KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 192 LTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
+T +H VV + +I+ +L + D+ W PLH AA G++++ + LL+
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW---TPLHLAAYRGHLEIVEVLLKYGA 104
Query: 250 RLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309
+ D G TPLHLAAE+G L+++++L+ KY + ++ ++ ++ +GN ++
Sbjct: 105 DVN-AMDYQGYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 310 SFI 312
+
Sbjct: 163 EIL 165
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + + G LH+ V + ++I +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ + + + T LH+AA G IV ++KY VN + D
Sbjct: 69 ----YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-------------DY 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
+G TPLH A + H ++ +L+ K + +K +T I+ID D+A
Sbjct: 112 QGYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317
+G TPLH AA+NG + +K L++K D + R+ + LH+AAK+G+ IV +L
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTL-SRHKSVNIRA 358
+N ++GNTP HLA H ++V L ++ VN R+
Sbjct: 67 D---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
PLH AA +G+ + ++LL + + R +G TPLHLAA+NG +++KLL+ K D +
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VN 69
Query: 288 IRNNSDRSILHVAAKHGNWNIVSFI 312
R+ + H+A K+G+ IV +
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
PLH AA +G+ ++ + LL + + R +G TP HLA +NG +++KLL K D
Sbjct: 45 PLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 327 RNGNTPLHLAAMGLHSDVVFT-LSRHKSVNIRAKN-----HSARSNTALEIAEITRANGK 380
++GNTPLH AA H++ V LS+ VN R+K+ H A N EI ++ A G
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 381 EI 382
++
Sbjct: 67 DV 68
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP 180
+GNTPLHNA N H ++ L+ K + ++ +K TPL +A +I ++ K
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 181 ESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDW 223
+ R D T H +++I VK+L ++ W
Sbjct: 67 DV--NARSKDGNTPEHLAKKNGHHEI-VKLLDAKGADVNARSW 106
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 9/120 (7%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI-LHVAAKHGNWNIVSFILRSP 316
+G +PLH+AA +G+ ++ LL+ +A N+D+++ LH+A + G++ +V +L S
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGANAGA--RNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITR 376
N +L +GNTPL A G H ++V L +H +I A N+ + NTAL A I +
Sbjct: 143 AKPNKKDL---SGNTPLIYACSGGHHELVALLLQH-GASINASNN--KGNTALHEAVIEK 196
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 227 NPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI--NKYPD 284
+PLH AA G + LL+ A R+ + PLHLA + G +V+K L+ N P+
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 285 AIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344
++ N+ L A G+ +V+ +L+ IN + GNT LH A + H V
Sbjct: 147 KKDLSGNTP---LIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKHVFV 200
Query: 345 VFTLSRH-KSVNIRAKNHSARSNTALEIAE 373
V L H SV + K R TA++ AE
Sbjct: 201 VELLLLHGASVQVLNK----RQRTAVDCAE 226
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
+N+ ++G++PLH+AA+ +D++ L +H N A+N
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKH-GANAGARN 116
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA SG++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGY 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
TPLHLAA G L+++++L+ D + ++ + LH+AAK G IV +L+
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
+N D+ G T ++ + D+ L +
Sbjct: 139 -VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 7/117 (5%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
D G TPLHLAA +G L+++++L+ D ++ + + LH+AA G+ IV +L++
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+N +D +G TPLHLAA + ++V L +H + ++ A++ + TA +I+
Sbjct: 103 GAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA-DVNAQDKFGK--TAFDIS 153
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + + G LH+A + +++ +L+
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
H + + ++ T LH+AA G IV ++K VN + D
Sbjct: 69 ----HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM-------------DS 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
+G TPLH A + ++ +L+ K + +K +T I+ID D+A
Sbjct: 112 DGMTPLHLAAKWGYLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
+N D G TPLHLAA H ++V L +H + ++ A + H A LEI E+
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA-DVDASDVFGYTPLHLAAYWGHLEIVEV 98
Query: 375 TRANGKEI 382
NG ++
Sbjct: 99 LLKNGADV 106
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
D +G+TPLHLAA G L+++++L+ D + + + LH+AA +G+ IV +L+
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+ +N D G TPLHLAA H ++V L ++ ++ A++ + TA +I+
Sbjct: 102 NGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKY-GADVNAQDKFGK--TAFDIS 153
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D + PLH AA G++++ + LL+ + D G+
Sbjct: 23 RAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGD 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L+++++L+ D + + + LH+AA G+ IV +L+
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G LH+A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
H + + + M +T LH+AA G IV ++K VN TD
Sbjct: 69 ----HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNA-------------TDT 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
G TPLH A H ++ +L+ K + +K +T I+ID D+A
Sbjct: 112 YGFTPLHLAADAGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAKN-----HSARSNTALEIAEIT 375
+N D +G TPLHLAA+ H ++V L +H + VN K H A LEI E+
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 376 RANGKEIQ 383
NG ++
Sbjct: 100 LKNGADVN 107
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
D +G TPLHLAA NG L+++++L+ D + +++ + L +AA G+ IV +L+
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+ +N D G+TPLHLAAM H ++V L ++ + ++ A++ + TA +I+
Sbjct: 102 NGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGK--TAFDIS 153
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA +G++++ + LL+ + D G
Sbjct: 23 RAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGM 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMEN 320
TPL LAA G L+++++L+ D + + + LH+AA G+ IV +L++
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLA 252
T +H + +I V++L N ++ +D PL AA G++++ + LL+ +
Sbjct: 49 TPLHLAAFNGHLEI-VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV- 106
Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
D G TPLHLAA G L+++++L+ D + ++ ++ ++ +GN ++ +
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G LH+A + +++ +L+ +
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
H + T L +AA G IV ++K VN D+
Sbjct: 74 NAVDHAGM---------TPLRLAALFGHLEIVEVLLKNGADVNA-------------NDM 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
EG+TPLH A H ++ +L+ K+ + +K +T I+ID D+A
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSN-------TALEIAEI 374
+N D +G TPLHLAA H ++V L ++ + ++ A +H+ + LEI E+
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-DVNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 375 TRANGKEIQ 383
NG ++
Sbjct: 99 LLKNGADVN 107
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 28/220 (12%)
Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK 178
D + NTPL AV + +R++ L + + P+ Y NK+ ++ L A R D +
Sbjct: 163 DCDENTPLXLAVLARRRRLVAYLXKAGADPTIY-NKSERSALHQAAANR--DFGXXVY-- 217
Query: 179 SPESLNTTRLPDEL--------TLIHFVVMRQNYDIMV--KILGTNKELID-----RLD- 222
LN+T+L ++ T + V + D + K+L +D R D
Sbjct: 218 ---XLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274
Query: 223 --WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
+ R LHYAA N + + L+ E K+D +G+TP+ LAA+ G+++V+ LI
Sbjct: 275 EKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS-PEME 319
+ ++E + +D + +A + + NIV R PE E
Sbjct: 335 QGA-SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 224 HQRNPLHYAAASGNVKMAQRLL-EESKRL------AYKRDCNGETPLHLAAENGKLKVLK 276
H R LH+ A++ + + ++ L+ E+K DC+ TPL LA + +++
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
L D I N S+RS LH AA + ++ + L S +++ I +DRNG T L +
Sbjct: 184 YLXKAGADPT-IYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIV 242
Query: 337 AMGLHSDVVFT 347
A D V +
Sbjct: 243 AHNEGRDQVAS 253
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 15/118 (12%)
Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI----LHVAAKHGNWNIVSFILR 314
G TPLHLAA G L+++++L+ D N+D S+ LH+AA G+ +V +L+
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADV-----NADDSLGVTPLHLAADRGHLEVVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+ +N D NG TPLHLAA H ++V L +H + ++ A++ + TA +I+
Sbjct: 102 NGAD---VNANDHNGFTPLHLAANIGHLEIVEVLLKHGA-DVNAQDKFGK--TAFDIS 153
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV-NADDSLGV 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA+ G L+V+++L+ D + +++ + LH+AA G+ IV +L+
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + S G LH+A F + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ + + + T LH+AA G +V ++K VN D
Sbjct: 71 ------ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA-------------NDH 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
G TPLH A H ++ +L+ K + +K +T I+ID D+A
Sbjct: 112 NGFTPLHLAANIGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
+N D G TPLHLAA H ++V L + ++ A + H A LE+ E+
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEV 98
Query: 375 TRANGKEIQ 383
NG ++
Sbjct: 99 LLKNGADVN 107
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 235 SGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR 294
GN + L+ ++ + D +G +PLH A G+ V+++LI + I + N D
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDD 73
Query: 295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
+ LH+AA HG+ +IV +L + + IN V+ +GN PLH A
Sbjct: 74 TPLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 114
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS-FILRSPEMENLINLVDRN 328
G ++L ++ + + ++ S LH A + G +V I+R IN+++R
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR----INVMNRG 71
Query: 329 GNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEITRANG 379
+TPLHLAA H D+V L ++K+ +I A N H A ++AE ANG
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKA-DINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 197 FVVMRQNYDIMVKILGTNKE-LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKR 255
F R+ + V++ N E +++ D H +PLH+A G + + L+ R+
Sbjct: 10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
+ +TPLHLAA +G +++ L+ +Y I N LH A G + ++ +
Sbjct: 70 RGD-DTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127
Query: 316 PEMENLINLVDRNGNTPLHLA 336
L+++ ++ G P+ A
Sbjct: 128 GA---LVSICNKYGEMPVDKA 145
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 73 NLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
N D+T LH+AA G R IV ++++Y +N V + GN PLH A
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAV-------------NEHGNVPLHYACFW 115
Query: 133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+V LV ++ S NK + P+ A
Sbjct: 116 GQDQVAEDLVANGAL-VSICNKYGEMPVDKA 145
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 235 SGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR 294
GN + L+ ++ + D +G +PLH A G+ V+++LI + I + N D
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDD 68
Query: 295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
+ LH+AA HG+ +IV +L + + IN V+ +GN PLH A
Sbjct: 69 TPLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 109
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS-FILRSPEMENLINLVDRN 328
G ++L ++ + + ++ S LH A + G +V I+R IN+++R
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR----INVMNRG 66
Query: 329 GNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEITRANG 379
+TPLHLAA H D+V L ++K+ +I A N H A ++AE ANG
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKA-DINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 73 NLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
N D+T LH+AA G R IV ++++Y +N V GN PLH A
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE-------------HGNVPLHYACFW 110
Query: 133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+V LV ++ S NK + P+ A
Sbjct: 111 GQDQVAEDLVANGAL-VSICNKYGEMPVDKA 140
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 197 FVVMRQNYDIMVKILGTNKE-LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKR 255
F R+ + V++ N E +++ D H +PLH+A G + + L+ R+
Sbjct: 5 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 64
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
+ +TPLHLAA +G +++ L+ +Y I N LH A G + ++ +
Sbjct: 65 RGD-DTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 122
Query: 316 PEMENLINLVDRNGNTPLHLA 336
L+++ ++ G P+ A
Sbjct: 123 GA---LVSICNKYGEMPVDKA 140
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL-AYKRDCNG 259
R D V+IL N ++ D PLH AA G++++ + LL+ + AY D G
Sbjct: 23 RAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY--DTLG 80
Query: 260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L+++++L+ D + ++++ + LH+AA G+ IV +L+
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
D G TPLHLAA G L+++++L+ D + + + LH+AA G+ IV +L++
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+N D NG TPLHLAA H ++V L ++ + ++ A++ + TA +I+
Sbjct: 103 GAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGK--TAFDIS 153
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLA 266
+V++L N ++ D PLH AA G++++ + LL+ + K D NG TPLHLA
Sbjct: 62 IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDD-NGITPLHLA 120
Query: 267 AENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
A G L+++++L+ KY + ++ ++ ++ +GN ++ + +
Sbjct: 121 ANRGHLEIVEVLL-KYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + + G LH+A + + +++ +L+
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+ + + + T LH+AA G IV ++K VN D
Sbjct: 71 ------ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA-------------KDD 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
G TPLH A H ++ +L+ K + +K +T I+I+ D+A
Sbjct: 112 NGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKFGKTAFDISINNGNEDLA 162
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
++ Q PLH+AA V + + LL+ + + +D G PLH A G +V +LL+
Sbjct: 40 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 97
Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR---SPEMENLINLVDRNGNTPLHLAA 337
K+ + + + + LH AA G + I +L+ P +N R+GNTPL L
Sbjct: 98 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 151
Query: 338 MG 339
G
Sbjct: 152 DG 153
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAV-LHMAVRFRNQQVIREILRQQDFI 60
D++LLE + GD +K+L Q + G + LH A + V+ +L+
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----- 65
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
H + + K+ LH A G + ++K+ VN + D+
Sbjct: 66 ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-------------VADL 108
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA 166
TPLH A + ++L++ + P+ N+ TPL + D
Sbjct: 109 WKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKDG 153
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
L +H +Y++ ++L + +++ D + PLH AAA G ++ + LL+
Sbjct: 78 LVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD- 135
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLL 278
K++ +G TPL L ++G + LL
Sbjct: 136 PTKKNRDGNTPLDL-VKDGDTDIQDLL 161
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
++ Q PLH+AA V + + LL+ + + +D G PLH A G +V +LL+
Sbjct: 38 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 95
Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR---SPEMENLINLVDRNGNTPLHLAA 337
K+ + + + + LH AA G + I +L+ P +N R+GNTPL L
Sbjct: 96 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 149
Query: 338 MG 339
G
Sbjct: 150 DG 151
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAV-LHMAVRFRNQQVIREILRQQDFI 60
D++LLE + GD +K+L Q + G + LH A + V+ +L+
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----- 63
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
H + + K+ LH A G + ++K+ VN + D+
Sbjct: 64 ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-------------VADL 106
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA 166
TPLH A + ++L++ + P+ N+ TPL + D
Sbjct: 107 WKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKDG 151
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
L +H +Y++ ++L + +++ D + PLH AAA G ++ + LL+
Sbjct: 76 LVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD- 133
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLL 278
K++ +G TPL L ++G + LL
Sbjct: 134 PTKKNRDGNTPLDL-VKDGDTDIQDLL 159
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
++ Q PLH+AA V + + LL+ + + +D G PLH A G +V +LL+
Sbjct: 42 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 99
Query: 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR---SPEMENLINLVDRNGNTPLHLAA 337
K+ + + + + LH AA G + I +L+ P +N R+GNTPL L
Sbjct: 100 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 153
Query: 338 MG 339
G
Sbjct: 154 DG 155
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAV-LHMAVRFRNQQVIREILRQQDFI 60
D++LLE + GD +K+L Q + G + LH A + V+ +L+
Sbjct: 13 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----- 67
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
H + + K+ LH A G + ++K+ VN + D+
Sbjct: 68 ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-------------VADL 110
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA 166
TPLH A + ++L++ + P+ N+ TPL + D
Sbjct: 111 WKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKDG 155
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251
L +H +Y++ ++L + +++ D + PLH AAA G ++ + LL+
Sbjct: 80 LVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD- 137
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLL 278
K++ +G TPL L ++G + LL
Sbjct: 138 PTKKNRDGNTPLDL-VKDGDTDIQDLL 163
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH+AA + + + + + + + TPLH A G L ++ L+ KY +
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSL 104
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS--DVVF 346
+ S +H+AA+ G+ +IV++++ + ++++D+NG TPL AA HS
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPTRL 161
Query: 347 TLSRHKSVNIRAKNHSARSNTALEIA 372
L+ + SVN+ K H NTAL A
Sbjct: 162 LLTFNVSVNLGDKYH---KNTALHWA 184
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 49/194 (25%)
Query: 75 MDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQH 134
++ T LH A R G ++V ++MKY G P L D EG + +H A H
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKY-------GADPSL------IDGEGCSCIHLAAQFGH 121
Query: 135 KRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTL 194
++ L+ K +++ TPL A S++ TRL L
Sbjct: 122 TSIVAYLIAKGQ-DVDMMDQNGMTPLMWAA-------------YRTHSVDPTRL-----L 162
Query: 195 IHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYK 254
+ F V + L D+ +H+ LH+A +GN + LLE +
Sbjct: 163 LTFNV--------------SVNLGDK--YHKNTALHWAVLAGNTTVISLLLEAGANVD-A 205
Query: 255 RDCNGETPLHLAAE 268
++ GE+ L LA +
Sbjct: 206 QNIKGESALDLAKQ 219
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK-DSVP-SSYINKAYQTPLSIAIDARLND 170
SL D +G PLH +V+ Q + L+ K ++V Y + + TP IA +
Sbjct: 27 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86
Query: 171 IACFIIDKSPESLNTTRLPDE-LTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRN 227
+ + D+ P + ++ ++ +T +H V ++ +++ ++ G + + D+ + +
Sbjct: 87 VVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QI 142
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
PLH AA+ G++K+ + L K +D G TPL A G LL+ KY +
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 288 IRNN 291
+ +N
Sbjct: 203 LVDN 206
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK------ 281
PLH A Q LL L ++D +G PLH + ++ L++K
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 282 --YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG 339
YPD +S + H+A GN +V + P +L N + G T LHLA
Sbjct: 65 DDYPD------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGK 117
Query: 340 LHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEIAEITRANGK 380
+V F + SV I+ K H A S +L++ E+ GK
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK-DSVP-SSYINKAYQTPLSIAIDARLND 170
SL D +G PLH +V+ Q + L+ K ++V Y + + TP IA +
Sbjct: 27 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86
Query: 171 IACFIIDKSPESLNTTRLPDE-LTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRN 227
+ + D+ P + ++ ++ +T +H V ++ +++ ++ G + + D+ + +
Sbjct: 87 VVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QI 142
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
PLH AA+ G++K+ + L K +D G TPL A G LL+ KY +
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 288 IRNN 291
+ +N
Sbjct: 203 LVDN 206
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK------ 281
PLH A Q LL L ++D +G PLH + ++ L++K
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 282 --YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG 339
YPD +S + H+A GN +V + P +L N + G T LHLA
Sbjct: 65 DDYPD------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGK 117
Query: 340 LHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEIAEITRANGK 380
+V F + SV I+ K H A S +L++ E+ GK
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK-DSVP-SSYINKAYQTPLSIAIDARLND 170
SL D +G PLH +V+ Q + L+ K ++V Y + + TP IA +
Sbjct: 27 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86
Query: 171 IACFIIDKSPESLNTTRLPDE-LTLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRN 227
+ + D+ P + ++ ++ +T +H V ++ +++ ++ G + + D+ + +
Sbjct: 87 VVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QI 142
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
PLH AA+ G++K+ + L K +D G TPL A G LL+ KY +
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 288 IRNN 291
+ +N
Sbjct: 203 LVDN 206
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK------ 281
PLH A Q LL L ++D +G PLH + ++ L++K
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 282 --YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG 339
YPD +S + H+A GN +V + P +L N + G T LHLA
Sbjct: 65 DDYPD------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGK 117
Query: 340 LHSDVV-FTLSRHKSVNIRAKN-----HSARSNTALEIAEITRANGK 380
+V F + SV I+ K H A S +L++ E+ GK
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ +D PLH AA G++++ + LL+ + RD G
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
TPLHLAA G L+++++L+ +Y + ++ ++ ++ +GN ++ +
Sbjct: 82 TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 73 NLMDE---TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNA 129
N MD+ T LH+AA+ G IV ++K+ VN DI G TPLH A
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-------------RDIWGRTPLHLA 87
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
T H ++ +L+E + ++ +K +T I+ID D+A
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLA 129
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNI 356
LH+AAK G+ IV +L+ +N D G TPLHLAA H ++V L + ++
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGAD---VNARDIWGRTPLHLAATVGHLEIVEVLLEY-GADV 106
Query: 357 RAKNHSARSNTALEIA 372
A++ + TA +I+
Sbjct: 107 NAQDKFGK--TAFDIS 120
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G LH+A + + +++ +L+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVN 103
H + + +++ T LH+AA +G IV +++Y VN
Sbjct: 69 ----HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
+N +D G TPLHLAA H ++V L +H ++ A++ H A + LEI E+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKH-GADVNARDIWGRTPLHLAATVGHLEIVEV 98
Query: 375 TRANGKEI 382
G ++
Sbjct: 99 LLEYGADV 106
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
LL PD +++ + +++H AA+ G + + +L E + +N+ D GN PLHLA
Sbjct: 57 LLRGANPD---LKDRTGFAVIHDAARAGQLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRAN 378
A H VV L +H + N+ +NH + +TA ++A + N
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARLYGRN 150
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 203 NYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
N +I ++L G N +L DR + +H AA +G + Q LLE + + D G
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFA---VIHDAARAGQLDTLQTLLEFQADVNIE-DNEGN 104
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
PLHLAA+ G L+V++ L+ + RN+ + +A +G +VS +
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 60 IALRLHYSLLRQKN--LMDETA---LHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL 114
IA RL LLR N L D T +H AAR G + ++++ VN
Sbjct: 52 IARRL---LLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN----------- 97
Query: 115 FRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+ D EGN PLH A H RV+ LV+ + + N T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 82/170 (48%), Gaps = 11/170 (6%)
Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAA-----ASGNVKMAQRLLEE 247
T +H+ V N+ ++ ++L + +D+ + +P+ A +++ +L
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172
Query: 248 SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN 307
+ K G+T L LA +G++ V+K L+ D + ++++ + L A +HG+
Sbjct: 173 GN-INAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKE 230
Query: 308 IVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR 357
I +L P + I+L DR+G+T L +A S++ L + +NI+
Sbjct: 231 IAGLLLAVPSCD--ISLTDRDGSTALMVALDAGQSEIASML--YSRMNIK 276
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 47/203 (23%)
Query: 8 VLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREIL------------- 54
V RH ++ L + + + GN LH +V N V++++L
Sbjct: 85 VRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA 144
Query: 55 -------------RQQDFIALRLHYSLLRQKNL------MDETALHIAARIGDRAIVSEI 95
+ QD I L L R N+ +TAL +A G +V +
Sbjct: 145 GYSPIMLTALATLKTQDDIETVLQ--LFRLGNINAKASQAGQTALMLAVSHGRVDVVKAL 202
Query: 96 MKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA 155
+ VN + D +G+T L A + HK + +L+ S S ++
Sbjct: 203 LACEADVN-------------VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 156 YQTPLSIAIDARLNDIACFIIDK 178
T L +A+DA ++IA + +
Sbjct: 250 GSTALMVALDAGQSEIASMLYSR 272
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
LL PD +++ + +++H AA+ G + + +L E + +N+ D GN PLHLA
Sbjct: 57 LLRGANPD---LKDRTGNAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI 374
A H VV L +H + N+ +NH + +TA ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARL 146
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 203 NYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
N +I ++L G N +L DR +H AA +G + Q LLE + + D G
Sbjct: 49 NPEIARRLLLRGANPDLKDRTG---NAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGN 104
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
PLHLAA+ G L+V++ L+ + RN+ + +A +G +VS +
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 60 IALRLHYSLLRQKN--LMDETA---LHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL 114
IA RL LLR N L D T +H AAR G + ++++ VN
Sbjct: 52 IARRL---LLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN----------- 97
Query: 115 FRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+ D EGN PLH A H RV+ LV+ + + N T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
+H AA G + + L + L K D G TPL A+ G+++ ++ L+ D I
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
S L +A+ G +IV +L E + IN+ D NG TPL A G H V L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 349 SRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
+ ++ + S + L +A R + I+ H+
Sbjct: 122 -LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 38/169 (22%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
++L D G TPL A +R L+E + P + K ++ LS+A DI
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGGYTDI 84
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
++++ D+ + I DW+ PL Y
Sbjct: 85 VGLLLER--------------------------DVDINIY----------DWNGGTPLLY 108
Query: 232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
A +VK + LL L + D +G TP+ LA G KV +++ N
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIEN 156
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
+H AA G + + L + L K D G TPL A+ G+++ ++ L+ D I
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
S L +A+ G +IV +L E + IN+ D NG TPL A G H V L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121
Query: 349 SRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHL 386
+ ++ + S + L +A R + I+ H+
Sbjct: 122 LA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 38/169 (22%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
++L D G TPL A +R L+E + P + K ++ LS+A DI
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGGYTDI 84
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
++++ D+ + I DW+ PL Y
Sbjct: 85 VGLLLER--------------------------DVDINIY----------DWNGGTPLLY 108
Query: 232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
A +VK + LL L + D +G TP+ LA G KV +++ N
Sbjct: 109 AVHGNHVKCVEALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIEN 156
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
LL PD +++ + +++H AA+ G + + +L E + +N+ D GN PLHLA
Sbjct: 57 LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRAN 378
A H VV L +H + N+ +NH + +TA ++A + N
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARLYGRN 150
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 203 NYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
N +I ++L G N +L DR + +H AA +G + Q LLE + + D G
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGF---AVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGN 104
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
PLHLAA+ G L+V++ L+ + RN+ + +A +G +VS +
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 60 IALRLHYSLLRQKN--LMDETA---LHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL 114
IA RL LLR N L D T +H AAR G + ++++ VN
Sbjct: 52 IARRL---LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN----------- 97
Query: 115 FRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+ D EGN PLH A H RV+ LV+ + + N T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ LD PLH AA G++++ + LL+ Y D N E
Sbjct: 23 RAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK------YGADVNAE 76
Query: 261 -----TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
TPLHLAA G L+++++L+ D + ++ ++ ++ +GN ++ +
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
D +G TPLHLAA+ G L+++++L+ KY + +N + LH+AA G+ IV +L+
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 316 PEMENLINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 103 GAD---VNAQDKFGKTAFDIS 120
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 73 NLMDE---TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNA 129
N +DE T LH+AA++G IV ++KY VN E F G TPLH A
Sbjct: 41 NALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA-------EDNF------GITPLHLA 87
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
H ++ +L+ K + +K +T I+ID D+A
Sbjct: 88 AIRGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNI 356
LH+AA+ G+ IV +L+ +N D G TPLHLAA+ H ++V L +H ++
Sbjct: 51 LHLAAQLGHLEIVEVLLKYGAD---VNAEDNFGITPLHLAAIRGHLEIVEVLLKH-GADV 106
Query: 357 RAKNHSARSNTALEIA 372
A++ + TA +I+
Sbjct: 107 NAQDKFGK--TAFDIS 120
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN-------HSARSNTALEIAEI 374
+N +D +G TPLHLAA H ++V L ++ ++ A++ H A LEI E+
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKY-GADVNAEDNFGITPLHLAAIRGHLEIVEV 98
Query: 375 TRANGKEI 382
+G ++
Sbjct: 99 LLKHGADV 106
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
LL PD +++ + +++H AA+ G + + +L E + +N+ D GN PLHLA
Sbjct: 57 LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRAN 378
A H VV L +H + N+ +NH + +TA ++A + N
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARLYGRN 150
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 203 NYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
N +I ++L G N +L DR + +H AA +G + Q LLE + + D G
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFA---VIHDAARAGFLDTLQTLLEFQADVNIE-DNEGN 104
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
PLHLAA+ G L+V++ L+ + RN+ + +A +G +VS +
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 60 IALRLHYSLLRQKN--LMDETA---LHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL 114
IA RL LLR N L D T +H AAR G + ++++ VN
Sbjct: 52 IARRL---LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN----------- 97
Query: 115 FRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+ D EGN PLH A H RV+ LV+ + + N T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH A+ G++ + LL+ K D G TPLH A +G LKV++LL+ ++ +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLL-QHKALVNT 71
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINL 324
+ S LH AAK+G+ +IV +L N +N+
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318
GET LH+A+ G + ++ L+ D +++++ + LH A HG+ +V +L +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLL---QH 65
Query: 319 ENLINLVDRNGNTPLHLAAMGLHSDVV 345
+ L+N ++PLH AA H D+V
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIV 92
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 193 TLIHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKR 250
TL+H ++ + + +L G++ + D W PLH A G++K+ + LL+ K
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---TPLHEACNHGHLKVVELLLQH-KA 67
Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLI 279
L ++PLH AA+NG + ++KLL+
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 73 NLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTN 132
N ET LHIA+ GD V ++ Q G P + D G TPLH A +
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLL-------QNGSDP------NVKDHAGWTPLHEACNH 53
Query: 133 QHKRVIRILVE 143
H +V+ +L++
Sbjct: 54 GHLKVVELLLQ 64
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 290 NNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349
N+ ++LH+A+ G+ V ++L++ N+ D G TPLH A H VV L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLL 63
Query: 350 RHKS-VNIRAKN-----HSARSNTALEIAEITRANG 379
+HK+ VN H A N ++I ++ + G
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWH---QRNPLHYAAASGNVKMAQRLLE 246
D + +H ++ + + ++++ K + L++ Q+ PLH A + ++A+ LL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-----IEIRNNSDRSILHVAA 301
RD G TPLHLA E G L + +L ++ N + + LH+A+
Sbjct: 67 AGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 302 KHGNWNIVSFILRSPEMENLINLVDR-NGNTPLHLAAMGLHSDVV 345
HG IV ++ + +N + NG T LHLA + D+V
Sbjct: 126 IHGYLGIVELLVS---LGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK--- 249
T +H V+ +I +LG + R D+ PLH A G + L +
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 250 --RLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN 307
+ + NG T LHLA+ +G L +++LL++ D + R+ LH+A N +
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 308 IVSFILRSPEMENLINLVDRNGNTPLHL 335
+VS +L+ +N V G +P L
Sbjct: 166 LVSLLLKCGAD---VNRVTYQGYSPYQL 190
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 27/217 (12%)
Query: 34 GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
G++ LH+A+ + + E++RQ ++ + L +N + +T LH+A I
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQ-----VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 94 EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSY-- 151
++ G P + D GNTPLH A + +L + + P +
Sbjct: 63 ALLG-------AGCDP------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109
Query: 152 ---INKAYQTPLSIA-IDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIM 207
N T L +A I L + + + +N + T +H V QN D++
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGA--DVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
+L + ++R+ + +P + ++ Q+L
Sbjct: 168 SLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQL 203
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWH---QRNPLHYAAASGNVKMAQRLLE 246
D + +H ++ + + ++++ K + L++ Q+ PLH A + ++A+ LL
Sbjct: 4 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 63
Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-----IEIRNNSDRSILHVAA 301
RD G TPLHLA E G L + +L ++ N + + LH+A+
Sbjct: 64 AGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 122
Query: 302 KHGNWNIVSFILRSPEMENLINLVDR-NGNTPLHLA 336
HG IV ++ + +N + NG T LHLA
Sbjct: 123 IHGYLGIVELLV---SLGADVNAQEPCNGRTALHLA 155
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK--- 249
T +H V+ +I +LG + R D+ PLH A G + L +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 250 --RLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN 307
+ + NG T LHLA+ +G L +++LL++ D + R+ LH+A N +
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 308 IVSFILRSPEMENLINLVDRNGNTPLHL 335
+VS +L+ +N V G +P L
Sbjct: 163 LVSLLLKCGAD---VNRVTYQGYSPYQL 187
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS---P 316
+TPLHLA + ++ + L+ D E+R+ + LH+A + G V + +S P
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 317 EMENLINLVDRNGNTPLHLAAM 338
+ +++ + NG+T LHLA++
Sbjct: 102 HLHSILKATNYNGHTCLHLASI 123
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 86/216 (39%), Gaps = 25/216 (11%)
Query: 34 GNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93
G++ LH+A+ + + E++RQ ++ + L +N + +T LH+A I
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQ-----VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 59
Query: 94 EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSY-- 151
++ G P + D GNTPLH A + +L + + P +
Sbjct: 60 ALLG-------AGCDP------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 106
Query: 152 ---INKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMV 208
N T L +A I ++ + +N + T +H V QN D++
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVS 165
Query: 209 KILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
+L + ++R+ + +P + ++ Q+L
Sbjct: 166 LLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQL 200
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ +D PLH AA G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L+++++L+ +Y + ++ ++ ++ +GN ++ + +
Sbjct: 82 TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
D G TPLHLAA+ G L+++++L+ D + ++ R+ LH+AA G+ IV +L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLL-- 100
Query: 316 PEMENLINLVDRNGNTPLHLA 336
E +N D+ G T ++
Sbjct: 101 -EYGADVNAQDKFGKTAFDIS 120
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 73 NLMDE---TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNA 129
N MD+ T LH+AA+ G IV ++K+ VN +D G TPLH A
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-------------SDSWGRTPLHLA 87
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
T H ++ +L+E + ++ +K +T I+ID D+A
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLA 129
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G LH+A + + +++ +L+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVN 103
H + + + T LH+AA +G IV +++Y VN
Sbjct: 69 ----HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNI-----RAKNHSARSNTALEIAEIT 375
+N +D G TPLHLAA H ++V L +H + VN R H A + LEI E+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 376 RANGKEI 382
G ++
Sbjct: 100 LEYGADV 106
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ +D PLH AA G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L+++++L+ +Y + ++ ++ ++ +GN ++ + +
Sbjct: 82 TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 73 NLMDE---TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNA 129
N MD+ T LH+AA+ G IV ++K+ VN +DI G TPLH A
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-------------SDIWGRTPLHLA 87
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
T H ++ +L+E + ++ +K +T I+ID D+A
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLA 129
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSD---RSILHVAAKHGNWNIVSFI 312
D G TPLHLAA+ G L+++++L+ D N SD R+ LH+AA G+ IV +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV----NASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 313 LRSPEMENLINLVDRNGNTPLHLA 336
L E +N D+ G T ++
Sbjct: 100 L---EYGADVNAQDKFGKTAFDIS 120
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + G LH+A + + +++ +L+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVN 103
H + + ++ T LH+AA +G IV +++Y VN
Sbjct: 69 ----HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNI-----RAKNHSARSNTALEIAEIT 375
+N +D G TPLHLAA H ++V L +H + VN R H A + LEI E+
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 376 RANGKEI 382
G ++
Sbjct: 100 LEYGADV 106
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
LL PD +++ + +++H AA+ G + + +L E + +N+ D GN PLHLA
Sbjct: 57 LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---ENQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI 374
A H VV L +H + N+ +NH + +TA ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARL 146
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 203 NYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
N +I ++L G N +L DR + +H AA +G + Q LLE + + D G
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFA---VIHDAARAGFLDTLQTLLENQADVNIE-DNEGN 104
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
PLHLAA+ G L+V++ L+ + RN+ + +A +G +VS +
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 21/109 (19%)
Query: 60 IALRLHYSLLRQKN--LMDETA---LHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESL 114
IA RL LLR N L D T +H AAR G + +++ VN
Sbjct: 52 IARRL---LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN----------- 97
Query: 115 FRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+ D EGN PLH A H RV+ LV+ + + N T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 39/206 (18%)
Query: 69 LRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHN 128
+ Q+ M ETALHIAA + +M+ P ++ P+ L+ EG T LH
Sbjct: 30 VHQRGAMGETALHIAALYDNLEAAMVLMEAAP---ELVFEPMTSELY-----EGQTALHI 81
Query: 129 AVTNQHKRVIRILVEKDSVPSSYINKAY------------QTPLSIAIDARLNDIACFII 176
AV NQ+ ++R L+ + + S+ + + PLS A +I +I
Sbjct: 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141
Query: 177 DKSPESLNTTRLPDEL--TLIHFVVMRQN-------YDIMVKILGTNKELIDRLDWHQRN 227
+ + R D L T++H ++++ N Y++++ G + + L+ N
Sbjct: 142 EHGAD----IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH--LKSLELVPNN 195
Query: 228 ----PLHYAAASGNVKMAQRLLEESK 249
P A GN+ M Q L+++ K
Sbjct: 196 QGLTPFKLAGVEGNIVMFQHLMQKRK 221
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 223 WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
W +PL AA +V+ +LL+ ++R GET LH+AA L+ +L+
Sbjct: 3 W--ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 283 PDAIEIRNNSD----RSILHVAAKHGNWNIVSFIL-RSPEM-------------ENLINL 324
P+ + S+ ++ LH+A + N N+V +L R + NLI
Sbjct: 61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI-- 118
Query: 325 VDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEI 371
G PL AA ++V L H + +IRA++ + NT L I
Sbjct: 119 --YYGEHPLSFAACVGSEEIVRLLIEHGA-DIRAQD--SLGNTVLHI 160
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N DW +PLH AA G+ + LL R RD +
Sbjct: 11 RAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLL----RAGVSRDARTK 65
Query: 261 ---TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLH+AA G ++++L+ D + ++ + LH A +H + +V +++
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
+ D G +PLHLAA+ G ++L+ + + + R DR+ LH+AA G+ NIV +
Sbjct: 28 FTTDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 313 LRSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
L+ +N D T LH A H +VV
Sbjct: 87 LKHGAD---VNAKDMLKMTALHWATEHNHQEVV 116
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L F+T G + LH+A ++ + +LR
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEVLLRA---- 56
Query: 61 ALRLHYSLLRQ-KNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTD 119
+ R + +D T LH+AA G IV ++K+ VN + + +M
Sbjct: 57 ------GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-------KDMLKM-- 101
Query: 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
T LH A + H+ V+ +L+ K +K +T I+ID D+A
Sbjct: 102 ----TALHWATEHNHQEVVELLI-KYGADVHTQSKFCKTAFDISIDNGNEDLA 149
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH AA+ G+ + + LL+ + K D T LH A E+ +V++LLI KY
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLI-KYGAD 125
Query: 286 IEIRNNSDRSILHVAAKHGNWNIVSFI 312
+ ++ ++ ++ +GN ++ +
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 224 HQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYP 283
++++ L AA SGN + LL + D TPLHLAA ++++++LL+
Sbjct: 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 284 DAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSD 343
D + ++ LH A +G++ + +L+ +N +D TPLH AA +
Sbjct: 83 D-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGA---CVNAMDLWQFTPLHEAASKNRVE 138
Query: 344 VVFTLSRHKS----VNIRAKN 360
V L H + VN K+
Sbjct: 139 VCSLLLSHGADPTLVNCHGKS 159
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 96/254 (37%), Gaps = 16/254 (6%)
Query: 222 DWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
D + PLH AA V++ Q LL+ + + +D G PLH A G +V +LL+ K
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLL-K 112
Query: 282 YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMG-L 340
+ + + + LH AA + S +L L+N +G + + +A L
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC---HGKSAVDMAPTPEL 169
Query: 341 HSDVVFTLSRHKSVNI--RAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKR 398
+ + H + A + ALEI + E H + +L + KR
Sbjct: 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL---HPKR 226
Query: 399 ALSAEELQQKRQVSKEEGEKGKEMAQTLSVMATLIXXXXXXXXXXIPGGVKSDGPDEGTA 458
AE L +K EK K+ L V A G K + D
Sbjct: 227 KQVAELLLRK---GANVNEKNKDFMTPLHVAAERAHNDVMEVLHK--HGAKMNALDSLGQ 281
Query: 459 TLLHRASFQAFVIT 472
T LHRA+ + T
Sbjct: 282 TALHRAALAGHLQT 295
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 137/344 (39%), Gaps = 65/344 (18%)
Query: 4 ELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAV-LHMAVRFRNQQVIREILRQQDFIAL 62
ELLE R G+E K+ L ++ +S G + LH+A + ++++ +L+
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ------- 79
Query: 63 RLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEG 122
H + + K+ LH A G + ++K+ VN + D+
Sbjct: 80 --HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM-------------DLWQ 124
Query: 123 NTPLHNAVTNQHKRVIRILVEKDSVPS-------SYINKAYQTPL-----------SIAI 164
TPLH A + V +L+ + P+ S ++ A L S+
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184
Query: 165 DARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVM------RQNYDIMVKILGTNKELI 218
AR D+A + E +N + T +H V +Q +++++ G N +
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GAN---V 240
Query: 219 DRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
+ + PLH AA + + + L + ++ D G+T LH AA G L+ +LL
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLL 299
Query: 279 INKYPDAIEIRNNSDRSILHV----AAKHGNWNIVSFILRSPEM 318
++ SD SI+ + AA+ GN + + S M
Sbjct: 300 LSY---------GSDPSIISLQGFTAAQMGNEAVQQILSESTPM 334
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 44/191 (23%)
Query: 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL------ 245
L +H +Y++ ++L + ++ +D Q PLH AA+ V++ LL
Sbjct: 92 LVPLHNACSYGHYEV-TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 246 -----------------EESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
E +RL Y + G + L A E KV K L A+EI
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTY--EFKGHSLLQAAREADLAKVKKTL------ALEI 202
Query: 289 RN----NSDRSILH--VAAKHGNWNIVSFILRSPEMENLINLVDRNGN--TPLHLAAMGL 340
N S + LH VA+ H V+ +L + N+ ++N + TPLH+AA
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELL----LRKGANVNEKNKDFMTPLHVAAERA 258
Query: 341 HSDVVFTLSRH 351
H+DV+ L +H
Sbjct: 259 HNDVMEVLHKH 269
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 37/189 (19%)
Query: 5 LLEVLRHGDEYKIKQLALRQDIFSTSSPGGN-AVLHMAV---RFRNQQVIREILRQQDFI 60
LL+ R D K+K+ L +I + P + LH AV + +QV +LR+ +
Sbjct: 182 LLQAAREADLAKVKK-TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDI 120
+KN T LH+AA ++ + K+ +N L+SL
Sbjct: 241 ---------NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN------ALDSL------ 279
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPS----------SYINKAYQTPLSIAIDARLND 170
G T LH A H + R+L+ S PS N+A Q LS + R +D
Sbjct: 280 -GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSD 338
Query: 171 IACFIIDKS 179
+ +++ S
Sbjct: 339 VDYRLLEAS 347
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
+D NG TPLHLAA NG L+V+KLL+ D + ++ ++ ++ +GN ++ +
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
D G+TPLH A N H V+++L+E + ++ +K +T I+ID D+A
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ-DKFGKTAFDISIDNGNEDLA 88
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N + D + PLH AA +G++++ + LLE + +D G+
Sbjct: 15 RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-NAQDKFGK 73
Query: 261 TPLHLAAENGKLKVLKLL 278
T ++ +NG + ++L
Sbjct: 74 TAFDISIDNGNEDLAEIL 91
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 326 DRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAK 359
D+NG+TPLHLAA H +VV L VN + K
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312
+D NG TPLHLAA NG L+V+KLL+ D + ++ ++ ++ +GN ++ +
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
D G+TPLH A N H V+++L+E + + +K +T I+ID D+A
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLA 106
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N + D + PLH AA +G++++ + LLE + +D G+
Sbjct: 33 RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGK 91
Query: 261 TPLHLAAENGKLKVLKLL 278
T ++ +NG + ++L
Sbjct: 92 TAFDISIDNGNEDLAEIL 109
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 326 DRNGNTPLHLAAMGLHSDVV 345
D+NG+TPLHLAA H +VV
Sbjct: 54 DKNGSTPLHLAARNGHLEVV 73
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 31/174 (17%)
Query: 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
D LT +H + N D MVK L N I++ D PLH AA+ G + +A+ L+ +
Sbjct: 72 DGLTALHQACIDDNVD-MVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Query: 250 RLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI------------- 296
+ + G+TPL +A E ++L+ +N+ IE + I
Sbjct: 131 HVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 297 -------------LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
LHVAA G ++ ++++ +N+ D +G TPLH AA
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKDYDGWTPLHAAA 240
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 44/258 (17%)
Query: 98 YLPAVNQVGPAPVLESLFRMTDI-----EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
+L A + VL L R DI +G T LH A + + +++ LVE + +
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 153 NKAYQTPLSIAIDARLNDIACFIIDKSPE----------SLNTTRLPDELTLIHFVVMRQ 202
N+ + PL A DIA ++I + L+ L+ V RQ
Sbjct: 104 NEGW-IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Query: 203 NYDIMVKILGTNKE-----LIDRLDW----------HQRN---PLHYAAASGNVKMAQRL 244
DI KE L D W H ++ LH AAA G ++ +L
Sbjct: 163 GVDIEA----ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL-KL 217
Query: 245 LEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
L +++ +D +G TPLH AA GK + ++L+ D +E N ++ VA +
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE-- 274
Query: 305 NWNIVSFILRSPEMENLI 322
+I+ ++ + +NL+
Sbjct: 275 --DILGYLEELQKKQNLL 290
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 78 TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRV 137
TALH+AA G ++ +++ VN + D +G TPLH A +
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVN-------------IKDYDGWTPLHAAAHWGKEEA 247
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIA 163
RILVE + +NK QT +A
Sbjct: 248 CRILVE-NLCDMEAVNKVGQTAFDVA 272
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 16/226 (7%)
Query: 119 DIEGNTPLHNAVTNQHKRVIRILV---EKDSVPSSYINKAYQTPLSIAIDARLNDIACFI 175
D +G+TPLH AV + + LV ++ N QTPL +A+ L + +
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 176 IDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRN-----PLH 230
+ + R T H ++ + +L + LD RN LH
Sbjct: 66 VTAGASPMALDR--HGQTAAHLACEHRSPTCLRALL--DSAAPGTLDLEARNYDGLTALH 121
Query: 231 YAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN 290
A + + Q LLE + +G +PL A EN L +++LL+ ++ + +
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQM 180
Query: 291 NSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
S S LH A+ G +V ++RS +L N + +TPL +A
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC---HNDTPLMVA 223
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA---IEIRNNSDRSILHVAAKHGNWN 307
+A + D +G+TPLH+A G L + L+N + ++I NN ++ LH+A +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 308 IVSFILRSPEMENLINLVDRNGNTPLHLAA 337
+V ++ + + DR+G T HLA
Sbjct: 61 VVRLLVTAGASPMAL---DRHGQTAAHLAC 87
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNG---ETPLHLAAENGKLKVLK 276
R D PLH A GN+ RL+ ++ + D +TPLHLA V++
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 277 LLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRN--GNTPLH 334
LL+ + + + ++ H+A +H + + +L S ++L RN G T LH
Sbjct: 64 LLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLTALH 121
Query: 335 LA 336
+A
Sbjct: 122 VA 123
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA ++++ + LL+ + D +G
Sbjct: 23 RAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L+++++L+ K+ + ++ ++ ++ +GN ++ + +
Sbjct: 82 TPLHLAALFGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAKNHSARSNTA-----LEIAEIT 375
+N DR GNTPLHLAA H ++V L +H + VN + S + A LEI E+
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 376 RANGKEIQ 383
+G ++
Sbjct: 100 LKHGADVN 107
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI 60
+ ++LLE R G + +++ L + + GN LH+A + + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVN 103
H + + + T LH+AA G IV ++K+ VN
Sbjct: 69 ----HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN 107
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 78 TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRV 137
T LH+AA IV ++K+ VN D +G+TPLH A H +
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHGADVN-------------AHDNDGSTPLHLAALFGHLEI 95
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
+ +L+ K + +K +T I+ID D+A
Sbjct: 96 VEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
D +GNTPLH A H ++ +L++ + +++ N TPL +A
Sbjct: 43 NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG-STPLHLA 87
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D+ PLH AA G++++ + LL+ + + G
Sbjct: 23 RAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA L+++++L+ D + ++ ++ ++ +GN ++ + +
Sbjct: 82 TPLHLAAWADHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK 302
R+L + D G TPLHLAA G L+++++L+ D + N+ R+ LH+AA
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLHLAAW 89
Query: 303 HGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336
+ IV +L+ +N D+ G T ++
Sbjct: 90 ADHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 120
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VN 355
LH+AA G+ IV +L++ +N G TPLHLAA H ++V L +H + VN
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGAD---VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 356 IRAK 359
+ K
Sbjct: 108 AQDK 111
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 78 TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRV 137
T LH+AA +G IV ++K VN G G TPLH A H +
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-------------GRTPLHLAAWADHLEI 95
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
+ +L+ K + +K +T I+ID D+A
Sbjct: 96 VEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARS-------NTALEIAEI 374
+N D G+TPLHLAAM H ++V L ++ ++ A ++ R+ LEI E+
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKN-GADVNATGNTGRTPLHLAAWADHLEIVEV 98
Query: 375 TRANGKEIQ 383
+G ++
Sbjct: 99 LLKHGADVN 107
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D + PL+ A A G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGF 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHLAA G L++ ++L+ D + ++ ++ ++ +GN ++ + +
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLV 325
AA G+ +++L+ D + ++ + L++A HG+ IV +L++ +N V
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---VNAV 76
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKE 381
D G TPLHLAA H ++ L +H ++ A++ + TA +I+ NG E
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGK--TAF---DISIGNGNE 126
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA + ++++ + LL+ + D GE
Sbjct: 23 RAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV-NAIDAIGE 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
TPLHL A G L+++++L+ D + ++ ++ ++ +GN ++ + +
Sbjct: 82 TPLHLVAMYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNI 356
LH+AA + + IV +L++ +N +D G TPLHL AM H ++V L +H ++
Sbjct: 51 LHLAAMNDHLEIVEVLLKNGAD---VNAIDAIGETPLHLVAMYGHLEIVEVLLKH-GADV 106
Query: 357 RAKNHSARSNTALEIA 372
A++ + TA +I+
Sbjct: 107 NAQDKFGK--TAFDIS 120
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI 162
G TPLH A N H ++ +L+ K+ + I+ +TPL +
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLL-KNGADVNAIDAIGETPLHL 86
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
+N D+ G TPLHLAAM H ++V L ++ +
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 7/195 (3%)
Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDK 178
D G T LH A + L++ + +S N +TPL A+ A + ++
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTG-RTPLHAAVAADAMGVFQILLRN 106
Query: 179 SPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV 238
+LN R+ D T + + R + MV+ L T I+ D + LH+AAA N
Sbjct: 107 RATNLNA-RMHDGTTPL-ILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNT 164
Query: 239 KMAQRLL-EESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL 297
+ LL + R A +D ETPL LAA G + K L++ + + EI ++ DR
Sbjct: 165 EAVNILLMHHANRDA--QDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPR 221
Query: 298 HVAAKHGNWNIVSFI 312
VA++ + +IV +
Sbjct: 222 DVASERLHHDIVRLL 236
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH A A+ + + Q LL R +G TPL LAA +++ LI D
Sbjct: 85 RTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD- 143
Query: 286 IEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
I +NS ++ LH AA N V+ +L + D TPL LAA
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANR---DAQDDKDETPLFLAA 192
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 244 LLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH 303
LL + L D GET LHLAA + K L++ DA ++N+ R+ LH A
Sbjct: 36 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAA 94
Query: 304 GNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
+ +LR+ +N +G TPL LAA
Sbjct: 95 DAMGVFQILLRNRATN--LNARMHDGTTPLILAA 126
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Query: 206 IMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHL 265
++ +L EL +D LH AA A+RLL+ A +D G TPLH
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHA 90
Query: 266 AAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLV 325
A + V ++L+ + R + + L +AA+ +V ++ + + IN
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA---DADINAA 147
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
D +G T LH AA +++ V L H +
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHHA 175
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 229 LHYAAASGN-VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
+H AA G + +A R+ E + + D G TPL AA +G++ V++ L+ D +
Sbjct: 5 VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 61
Query: 288 IRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
+ S L +A G +IV +L + +N D NG TPL A G H V
Sbjct: 62 LLGKGRESALSLACSKGYTDIVKMLL---DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 118
Query: 348 LSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALK 392
L + + S ++ L +A R+ + I+ HL LK L+
Sbjct: 119 L-LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQ 161
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 38/167 (22%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
E++ TD EG TPL A + V+ L++ + P + K ++ LS+A DI
Sbjct: 24 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSKGYTDI 82
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
++D + ++ DW+ PL Y
Sbjct: 83 VKMLLDCGVD------------------------------------VNEYDWNGGTPLLY 106
Query: 232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
A +VK + LLE + D +G + LA G V +++
Sbjct: 107 AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYRSVQQVI 152
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLE---ESKRLAYKRDCNGETPLHLAAENGK 271
+ +I+ D PL +AAA G + + + LL+ + + L R E+ L LA G
Sbjct: 24 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR----ESALSLACSKGY 79
Query: 272 LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN 305
++K+L++ D E N +L+ A HGN
Sbjct: 80 TDIVKMLLDCGVDVNEYDWNGGTPLLY--AVHGN 111
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 229 LHYAAASGN-VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
+H AA G + +A R+ E + + D G TPL AA +G++ V++ L+ D +
Sbjct: 23 VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 79
Query: 288 IRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
+ S L +A G +IV +L + +N D NG TPL A G H V
Sbjct: 80 LLGKGRESALSLACSKGYTDIVKMLL---DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 136
Query: 348 LSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALK 392
L + + S ++ L +A R+ + I+ HL LK L+
Sbjct: 137 L-LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQ 179
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 38/167 (22%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
E++ TD EG TPL A + V+ L++ + P + K ++ LS+A DI
Sbjct: 42 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSKGYTDI 100
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
++D + ++ DW+ PL Y
Sbjct: 101 VKMLLDCGVD------------------------------------VNEYDWNGGTPLLY 124
Query: 232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
A +VK + LLE + D +G + LA G V +++
Sbjct: 125 AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYRSVQQVI 170
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLE---ESKRLAYKRDCNGETPLHLAAENGK 271
+ +I+ D PL +AAA G + + + LL+ + + L R E+ L LA G
Sbjct: 42 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR----ESALSLACSKGY 97
Query: 272 LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN 305
++K+L++ D E N +L+ A HGN
Sbjct: 98 TDIVKMLLDCGVDVNEYDWNGGTPLLY--AVHGN 129
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 229 LHYAAASGN-VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
+H AA G + +A R+ E + + D G TPL AA +G++ V++ L+ D +
Sbjct: 7 VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 63
Query: 288 IRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
+ S L +A G +IV +L + +N D NG TPL A G H V
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLL---DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 348 LSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALK 392
L + + S ++ L +A R+ + I+ HL LK L+
Sbjct: 121 L-LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQ 163
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 38/167 (22%)
Query: 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171
E++ TD EG TPL A + V+ L++ + P + K ++ LS+A DI
Sbjct: 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSKGYTDI 84
Query: 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
++D + ++ DW+ PL Y
Sbjct: 85 VKMLLDCGVD------------------------------------VNEYDWNGGTPLLY 108
Query: 232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
A +VK + LLE + D +G + LA G V +++
Sbjct: 109 AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYRSVQQVI 154
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 215 KELIDRLDWHQRNPLHYAAASGNVKMAQRLLE---ESKRLAYKRDCNGETPLHLAAENGK 271
+ +I+ D PL +AAA G + + + LL+ + + L R E+ L LA G
Sbjct: 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR----ESALSLACSKGY 81
Query: 272 LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGN 305
++K+L++ D E N +L+ A HGN
Sbjct: 82 TDIVKMLLDCGVDVNEYDWNGGTPLLY--AVHGN 113
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 117/300 (39%), Gaps = 51/300 (17%)
Query: 26 IFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI-ALRLHYSLLRQKNLMDETALHIAA 84
+F + G+ LH+AV +++ + DF+ + L +N + +TALH+AA
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFL-------DFLLGFSAGHEYLDLQNDLGQTALHLAA 53
Query: 85 RIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK 144
+G+ + V ++ A VL + + G+T LH A + +L++
Sbjct: 54 ILGEASTVEKLY--------AAGAGVL-----VAERGGHTALHLACRVRAHTCACVLLQP 100
Query: 145 DSVPSSYINKAYQTPLSIAIDARLN-DIACFIIDKSPESLNTTRLPDELTLIHFVVMRQN 203
S+ A T L+ + D + A +D P N DE + +N
Sbjct: 101 RP---SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA--EN 155
Query: 204 YDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPL 263
YD PLH A + +M + L + L G TPL
Sbjct: 156 YD-------------------GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Query: 264 HLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR---SPEMEN 320
HLA E VL+LL+ D R R+ L A N I++ +LR +PE E+
Sbjct: 197 HLAVEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPN-PILARLLRAHGAPEPED 254
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 117/300 (39%), Gaps = 51/300 (17%)
Query: 26 IFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFI-ALRLHYSLLRQKNLMDETALHIAA 84
+F + G+ LH+AV +++ + DF+ + L +N + +TALH+AA
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFL-------DFLLGFSAGHEYLDLQNDLGQTALHLAA 53
Query: 85 RIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK 144
+G+ + V ++ A VL + + G+T LH A + +L++
Sbjct: 54 ILGEASTVEKLY--------AAGAGVL-----VAERGGHTALHLACRVRAHTCACVLLQP 100
Query: 145 DSVPSSYINKAYQTPLSIAIDARLN-DIACFIIDKSPESLNTTRLPDELTLIHFVVMRQN 203
S+ A T L+ + D + A +D P N DE + +N
Sbjct: 101 RP---SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA--EN 155
Query: 204 YDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPL 263
YD PLH A + +M + L + L G TPL
Sbjct: 156 YD-------------------GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Query: 264 HLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR---SPEMEN 320
HLA E VL+LL+ D R R+ L A N I++ +LR +PE E+
Sbjct: 197 HLAVEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPN-PILARLLRAHGAPEPED 254
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN 291
AA + K + +L+++ + D G TPL++A N +++ K LI++ D I ++N+
Sbjct: 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNS 70
Query: 292 -SDRSILHVAAKHGNWNIVSFILR--SPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
SD L+ A+ G I++++L+ +P++ N +R G L AA H D V
Sbjct: 71 ISDSPYLYAGAQ-GRTEILAYMLKHATPDL----NKHNRYGGNALIPAAEKGHIDNV 122
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 94 EIMKYLPAVNQVGPAPVLESLFRMT------DIEGNTPLHNAVTNQHKRVIRILVEK 144
E+ L A NQ V E L T D EGNTPL+ AV N + + L+++
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 215 KELIDR-LDWHQRN-----PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAE 268
K LIDR D + +N P YA A G ++ +L+ + K + G L AAE
Sbjct: 56 KALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115
Query: 269 NGKLKVLKLLINKYPDAIEIRNNSDRSIL--HVAAKHGN---WNIVSFILRSPEMENLIN 323
G + +KLL+ + I+ +N+ + L V + GN +IV ++ + + +
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ---S 172
Query: 324 LVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
+ D +G T + A ++++ L+++
Sbjct: 173 IKDNSGRTAMDYANQKGYTEISKILAQY 200
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 60/259 (23%)
Query: 67 SLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPL 126
SL Q + ETALH+AAR +++ N + D G TPL
Sbjct: 49 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-------------IQDNMGRTPL 95
Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT 186
H AV+ + V +IL+ N+A +DAR++D TT
Sbjct: 96 HAAVSADAQGVFQILIR---------NRATD------LDARMHD-------------GTT 127
Query: 187 RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
L + R + M++ L + ++ +D ++ LH+AAA NV A LL+
Sbjct: 128 PL--------ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 179
Query: 247 E--SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
+K + R+ ETPL LAA G + K+L++ + + +I ++ DR +A +
Sbjct: 180 NGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERM 235
Query: 305 NWNIVSF-----ILRSPEM 318
+ +IV ++RSP++
Sbjct: 236 HHDIVRLLDEYNLVRSPQL 254
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNW 306
+ L + D GET LHLAA + K L+ DA I++N R+ LH A
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQ 104
Query: 307 NIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
+ ++R+ + ++ +G TPL LAA
Sbjct: 105 GVFQILIRNRATD--LDARMHDGTTPLILAA 133
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH AA A+RLLE S A +D G TPLH A V ++LI ++
Sbjct: 62 LHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH 334
R + + L +AA+ ++ ++ S +N VD G + LH
Sbjct: 121 RMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 163
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 288 IRNNSDRS---ILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344
+ N +DR+ LH+AA++ + +L E N+ D G TPLH A V
Sbjct: 50 LHNQTDRTGETALHLAARYSRSDAAKRLL---EASADANIQDNMGRTPLHAAVSADAQGV 106
Query: 345 VFTLSRHKSVNIRAKNHSA 363
L R+++ ++ A+ H
Sbjct: 107 FQILIRNRATDLDARMHDG 125
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 35/161 (21%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH A ++ + Q L+ R +G TPL LAA +L+ LIN + D
Sbjct: 92 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 151
Query: 286 --------------------------------IEIRNNSDRSILHVAAKHGNWNIVSFIL 313
+++NN + + L +AA+ G++ +L
Sbjct: 152 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
Query: 314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV 354
++ + +DR P +A +H D+V L + V
Sbjct: 212 DHFANRDITDHMDR---LPRDIAQERMHHDIVRLLDEYNLV 249
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 60/259 (23%)
Query: 67 SLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPL 126
SL Q + ETALH+AAR +++ N + D G TPL
Sbjct: 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-------------IQDNMGRTPL 62
Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT 186
H AV+ + V +IL+ N+A +DAR++D +I
Sbjct: 63 HAAVSADAQGVFQILIR---------NRATD------LDARMHDGTTPLI---------- 97
Query: 187 RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
+ R + M++ L + ++ +D ++ LH+AAA NV A LL+
Sbjct: 98 -----------LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 247 E--SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
+K + R+ ETPL LAA G + K+L++ + + +I ++ DR +A +
Sbjct: 147 NGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERM 202
Query: 305 NWNIVSF-----ILRSPEM 318
+ +IV ++RSP++
Sbjct: 203 HHDIVRLLDEYNLVRSPQL 221
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
D GET LHLAA + K L+ DA I++N R+ LH A + ++R+
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 316 PEMENLINLVDRNGNTPLHLAA 337
+ ++ +G TPL LAA
Sbjct: 81 RATD--LDARMHDGTTPLILAA 100
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH AA A+RLLE S A +D G TPLH A V ++LI ++
Sbjct: 29 LHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH 334
R + + L +AA+ ++ ++ S +N VD G + LH
Sbjct: 88 RMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 130
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 288 IRNNSDRS---ILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344
+ N +DR+ LH+AA++ + +L E N+ D G TPLH A V
Sbjct: 17 LHNQTDRTGETALHLAARYSRSDAAKRLL---EASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 345 VFTLSRHKSVNIRAKNHSA 363
L R+++ ++ A+ H
Sbjct: 74 FQILIRNRATDLDARMHDG 92
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCN--GETPLHLAAENGKLKVLKLLINKYPDAI 286
L AAA G+V+ +RLL + L + N G+T L + L+LL K +
Sbjct: 14 LSGAAARGDVQEVRRLLH--RELVHPDALNRFGKTALQVMMFGSPAVALELL--KQGASP 69
Query: 287 EIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346
+++ S S +H AA+ G + + ++ E +N +D G+ P+HLA HS VV
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLV---EHGADVNALDSTGSLPIHLAIREGHSSVVS 126
Query: 347 TLSRHKSVNIRAKNHSARSNTALEIA 372
L+ ++ R A T LE+A
Sbjct: 127 FLAPESDLHHR----DASGLTPLELA 148
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R + +K+L + ++ LD P+H A G+ + L ES + RD +G
Sbjct: 85 RTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD--LHHRDASGL 142
Query: 261 TPLHLAAENGKLKVLKLL 278
TPL LA + G ++ +L
Sbjct: 143 TPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCN--GETPLHLAAENGKLKVLKLLINKYPDAI 286
L AAA G+V+ +RLL + L + N G+T L + L+LL K +
Sbjct: 12 LSGAAARGDVQEVRRLLH--RELVHPDALNRFGKTALQVMMFGSPAVALELL--KQGASP 67
Query: 287 EIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346
+++ S S +H AA+ G + + ++ E +N +D G+ P+HLA HS VV
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLV---EHGADVNALDSTGSLPIHLAIREGHSSVVS 124
Query: 347 TLSRHKSVNIRAKNHSARSNTALEIA 372
L+ ++ R A T LE+A
Sbjct: 125 FLAPESDLHHR----DASGLTPLELA 146
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R + +K+L + ++ LD P+H A G+ + L ES + RD +G
Sbjct: 83 RTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD--LHHRDASGL 140
Query: 261 TPLHLAAENGKLKVLKLL 278
TPL LA + G ++ +L
Sbjct: 141 TPLELARQRGAQNLMDIL 158
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315
D GET LHLAA + K L+ DA I++N R+ LH A + +LR+
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAX-IQDNMGRTPLHAAVSADAQGVFQILLRN 77
Query: 316 PEMENLINLVDRNGNTPLHLAA-MGLHSDVVFTLSRHKSVN 355
+ ++ +G TPL LAA + L + ++ H VN
Sbjct: 78 RATD--LDARMHDGTTPLILAARLALEGMLEDLINSHADVN 116
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 5/200 (2%)
Query: 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIA 172
SL TD G T LH A + L+E S + + +TPL A+ A +
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADAXIQDNMGRTPLHAAVSADAQGVF 71
Query: 173 CFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYA 232
++ L+ R+ D T + + R + M++ L + ++ +D ++ LH+A
Sbjct: 72 QILLRNRATDLDA-RMHDGTTPL-ILAARLALEGMLEDLINSHADVNAVDDLGKSALHWA 129
Query: 233 AASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS 292
AA NV A LL+ + + ETPL LAA G + K+L++ + + +I ++
Sbjct: 130 AAVNNVDAAVVLLKNGANKDMQNNKE-ETPLFLAAREGSYETAKVLLDHFANR-DITDHM 187
Query: 293 DRSILHVAAKHGNWNIVSFI 312
DR +A + + +IV +
Sbjct: 188 DRLPRDIAQERMHHDIVRLL 207
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 35/158 (22%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH A ++ + Q LL R +G TPL LAA +L+ LIN + D
Sbjct: 56 RTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADV 115
Query: 286 --------------------------------IEIRNNSDRSILHVAAKHGNWNIVSFIL 313
+++NN + + L +AA+ G++ +L
Sbjct: 116 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Query: 314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
++ + +DR P +A +H D+V L +
Sbjct: 176 DHFANRDITDHMDR---LPRDIAQERMHHDIVRLLDEY 210
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNI 356
LH AAK GN +S++ + +N +D+ G+T L+ A G H D+V L ++ +
Sbjct: 77 LHEAAKRGN---LSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 357 RAKN-------HSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRALSAEELQQKR 409
+N H+A +I ++ A G K L A A A L++K+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKKKQ 193
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 227 NPLHYAAASGNVKMAQRLLEESKRLAYKR-DCNGETPLHLAAENGKLKVLKLLINKYPDA 285
NPLH AA GN+ + L+ R+ D G T L+ A G +++ L +
Sbjct: 75 NPLHEAAKRGNLSWLRECLD--NRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 286 IEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINL 324
+ +N + LH AA G +IV +L +L N+
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 55/248 (22%)
Query: 67 SLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPL 126
SL Q + ETALH+AAR +++ N + D G TPL
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-------------IQDNMGRTPL 94
Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT 186
H AV+ + V +IL+ N+A +DAR++D TT
Sbjct: 95 HAAVSADAQGVFQILIR---------NRATD------LDARMHD-------------GTT 126
Query: 187 RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
L + R + M++ L + ++ +D ++ LH+AAA NV A LL+
Sbjct: 127 PL--------ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 247 E--SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
+K + R+ ETPL LAA G + K+L++ + + +I ++ DR +A +
Sbjct: 179 NGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERM 234
Query: 305 NWNIVSFI 312
+ +IV +
Sbjct: 235 HHDIVRLL 242
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNW 306
+ L + D GET LHLAA + K L+ DA I++N R+ LH A
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQ 103
Query: 307 NIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
+ ++R+ + ++ +G TPL LAA
Sbjct: 104 GVFQILIRNRATD--LDARMHDGTTPLILAA 132
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH AA A+RLLE S A +D G TPLH A V ++LI ++
Sbjct: 61 LHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH 334
R + + L +AA+ ++ ++ S +N VD G + LH
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 162
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 288 IRNNSDRS---ILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344
+ N +DR+ LH+AA++ + +L E N+ D G TPLH A V
Sbjct: 49 LHNQTDRTGETALHLAARYSRSDAAKRLL---EASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 345 VFTLSRHKSVNIRAKNHSA 363
L R+++ ++ A+ H
Sbjct: 106 FQILIRNRATDLDARMHDG 124
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS-------------DRSILHVAAKHGN 305
G + LH+A E L+ +KLL+ D + +R L +AA
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 306 WNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
W++V+++L +P + D GNT LH M
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 38/191 (19%)
Query: 107 PAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDS-----VPSSYINKAYQT--- 158
P P++ + +G++ LH A+ + + +++LVE + + K T
Sbjct: 75 PKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFY 134
Query: 159 ----PLSIAIDARLNDIACFIIDK--SPESLNTTRLPDEL--TLIHFVVMRQNYDIMVKI 210
PLS+A + D+ ++++ P SL T D L T++H +VM
Sbjct: 135 FGELPLSLAACTKQWDVVTYLLENPHQPASLEAT---DSLGNTVLHALVM---------- 181
Query: 211 LGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG 270
+ N L H + G ++M RL + +L + G TPL LAA+ G
Sbjct: 182 IADNSPENSALVIHMYD--------GLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEG 232
Query: 271 KLKVLKLLINK 281
K+++ + ++ +
Sbjct: 233 KIEIFRHILQR 243
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS-------------DRSILHVAAKHGN 305
G + LH+A E L+ +KLL+ D + +R L +AA
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 306 WNIVSFILRSPEMENLINLVDRNGNTPLHLAAM 338
W++V+++L +P + D GNT LH M
Sbjct: 162 WDVVTYLLENPHQPASLEATDSLGNTVLHALVM 194
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 38/191 (19%)
Query: 107 PAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDS-----VPSSYINKAYQT--- 158
P P++ + +G++ LH A+ + + +++LVE + + K T
Sbjct: 88 PKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFY 147
Query: 159 ----PLSIAIDARLNDIACFIIDK--SPESLNTTRLPDEL--TLIHFVVMRQNYDIMVKI 210
PLS+A + D+ ++++ P SL T D L T++H +VM
Sbjct: 148 FGELPLSLAACTKQWDVVTYLLENPHQPASLEAT---DSLGNTVLHALVM---------- 194
Query: 211 LGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG 270
+ N L H + G ++M RL + +L + G TPL LAA+ G
Sbjct: 195 IADNSPENSALVIHMYD--------GLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEG 245
Query: 271 KLKVLKLLINK 281
K+++ + ++ +
Sbjct: 246 KIEIFRHILQR 256
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 259 GETPLHLAAENGKLKVLKLLI----NKYPDAIEIRNNSDRSI--------LHVAAKHGNW 306
G + LH+A E L+ +KLL+ N + A + L +AA W
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 307 NIVSFILRSPEMENLINLVDRNGNTPLH 334
++VS++L +P + D GNT LH
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVLH 182
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH AAA A+RLLE S A +D G TPLH A V ++LI ++
Sbjct: 61 LHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 289 RNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH 334
R + + L +AA+ ++ ++ S +N VD G + LH
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 162
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNW 306
+ L + D G T LHLAA + K L+ DA I++N R+ LH A
Sbjct: 45 QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQ 103
Query: 307 NIVSFILRSPEMENLINLVDRNGNTPLHLAA 337
+ ++R+ + ++ +G TPL LAA
Sbjct: 104 GVFQILIRNRATD--LDARMHDGTTPLILAA 132
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 55/248 (22%)
Query: 67 SLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPL 126
SL Q + TALH+AA +++ N + D G TPL
Sbjct: 48 SLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADAN-------------IQDNMGRTPL 94
Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT 186
H AV+ + V +IL+ N+A +DAR++D TT
Sbjct: 95 HAAVSADAQGVFQILIR---------NRATD------LDARMHD-------------GTT 126
Query: 187 RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
L + R + M++ L + ++ +D ++ LH+AAA NV A LL+
Sbjct: 127 PL--------ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 247 E--SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304
+K + R+ ETPL LAA G + K+L++ + + +I ++ DR +A +
Sbjct: 179 NGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERM 234
Query: 305 NWNIVSFI 312
+ +IV +
Sbjct: 235 HHDIVRLL 242
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
+D +G TPLHLAA G L+++++L+ D + ++ ++ ++ +GN ++ + +
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Query: 315 S 315
+
Sbjct: 90 A 90
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + +D G+
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGK 69
Query: 261 TPLHLAAENGKLKVLKLL 278
T ++ +NG + ++L
Sbjct: 70 TAFDISIDNGNEDLAEIL 87
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIA 372
+N D++G TPLHLAA H ++V L + ++ A++ + TA +I+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGK--TAFDIS 75
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 237 NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI 296
+V + Q+LLE + ++ + G TPLH A + + +++LL+ D + + N
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM-GLHSDVVFTLSRHKSVN 355
L +AA G+ ++ L +N D G T AA+ G + F R +VN
Sbjct: 77 L-LAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
Query: 356 IRAK 359
+R K
Sbjct: 133 LRRK 136
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 19/265 (7%)
Query: 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKS 179
+E N L AV N+ +++ L+E + + + TPL A+ DI ++
Sbjct: 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62
Query: 180 PESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK 239
+ + R + T + + ++ L + ++ D++ AA G VK
Sbjct: 63 ADPV--LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVK 119
Query: 240 MAQRLLEESKRLAYKRDC---------NGETPLHLAAENGKLKVLKLLINKYPDAIEIRN 290
+ L + + +R G T L AAE G ++VLK+L+++ + +
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179
Query: 291 NSDR-SILH--VAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
N R +++H +++ + ++ +L + +N+ G TPL LA H +V
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGAD--VNVRGERGKTPLILAVEKKHLGLVQR 237
Query: 348 LSRHKSVNIRAKNHSARSNTALEIA 372
L + + I + + TAL +A
Sbjct: 238 LLEQEHIEINDTDSDGK--TALLLA 260
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLV 325
AA G+L+V++ + + D + N + LH A N++IV F++ + +N
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQ-PNEEGITALHNAICGANYSIVDFLITAGAN---VNSP 83
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSV 354
D +G TPLH AA + + L +H +
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALVQHGAA 112
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 171 IACFI-----IDKSPESLNTTRLPDE----LTLIHFVVMRQNYDIMVKIL--GTNKELID 219
+AC + IDK E N +L D+ T + + V I K+L G+N ++
Sbjct: 41 VACMLGMENAIDKLVE--NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VN 95
Query: 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
D+ + PL ++ G +M+ LLE + R+ GETPL +A++ G+ +++K L+
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLL 154
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 237 NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI 296
+V + Q+LLE + ++ + G TPLH A + + +++LL+ D + +R + +
Sbjct: 37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATP 95
Query: 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAM-GLHSDVVFTLSRHKSVN 355
+AA G+ ++ L +N D G T AA+ G + F R +VN
Sbjct: 96 FILAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 152
Query: 356 IRAK 359
+R K
Sbjct: 153 LRRK 156
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
+ PL A ++ + QRLLE+ D +G+T L LA E K+ +LL +
Sbjct: 240 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 299
Query: 286 ------IEIRNNSDRSILHVAAKHG 304
+ R N D S++ V HG
Sbjct: 300 DCGDLVMTARRNYDHSLVKVLLSHG 324
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
R PLHYAA G +++ + LL + + D + TPL A G + +KLL++K D
Sbjct: 41 RKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETP 262
N + + L N +++ D R PLH+A G+ +A L+ L RD G P
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDP 304
Query: 263 LHLAAENGKLKVLKLL 278
L +A E ++ LL
Sbjct: 305 LTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETP 262
N + + L N +++ D R PLH+A G+ +A L+ L RD G P
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDP 304
Query: 263 LHLAAENGKLKVLKLL 278
L +A E ++ LL
Sbjct: 305 LTIAMETANADIVTLL 320
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
R PLHYAA G +++ + LL + + D + TPL A G + +KLL++K D
Sbjct: 36 RKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETP 262
N + + L N +++ D R PLH+A G+ +A L+ L RD G P
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDP 304
Query: 263 LHLAAENGKLKVLKLL 278
L +A E ++ LL
Sbjct: 305 LTIAMETANADIVTLL 320
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 52/228 (22%)
Query: 57 QDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFR 116
+DF +RL + L + D + +H AA G + + ++ AVN
Sbjct: 40 RDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN------------- 86
Query: 117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFII 176
+ + +PLH A H ++IL+ K + + + TPL N AC +
Sbjct: 87 IITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPL-------FN--AC--V 134
Query: 177 DKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
S + +N L L H ++ D+ +P+H AA G
Sbjct: 135 SGSWDCVN-------LLLQHGASVQPESDLA-------------------SPIHEAARRG 168
Query: 237 NVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
+V+ L+ + +K G TPL+LA EN + +K L+ D
Sbjct: 169 HVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGAD 215
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 41/179 (22%)
Query: 124 TPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESL 183
+PLH A H ++IL+ K + + + TPL A + S + +
Sbjct: 38 SPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNAC-----------VSGSWDCV 85
Query: 184 NTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQR 243
N L L H ++ D+ +P+H AA G+V+
Sbjct: 86 N-------LLLQHGASVQPESDLA-------------------SPIHEAARRGHVECVNS 119
Query: 244 LLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK 302
L+ + +K G TPL+LA EN + +K L+ D + + S LH A+
Sbjct: 120 LIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQGKGQD--SPLHAVAR 175
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313
K D +H+AA G+ ++ LI I+N + LH+A K G + ++
Sbjct: 15 KSDDENXEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLA 73
Query: 314 RSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
E+ +L + G P+HLA +D+V L
Sbjct: 74 SVGEVHSLWH-----GQKPIHLAVXANKTDLVVAL 103
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
+ D H + +YA A NV++ LL A K E PLH AA K++K+L+
Sbjct: 26 KADVHGHSASYYAIADNNVRLVCTLLNAG---ALKNLLENEFPLHQAATLEDTKIVKILL 82
Query: 280 NKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILR 314
D + + + + L+ A GN V ++
Sbjct: 83 FSGLDDSQFDDKGNTA-LYYAVDSGNXQTVKLFVK 116
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
P+H A G+ + L ES ++RD G TPL LA + G ++ +L
Sbjct: 110 PIHLAVQEGHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278
P+H A G+ + L ES ++RD G TPL LA + G ++ +L
Sbjct: 104 PIHLAVQEGHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 DETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK 135
DETALH+A R DR + I+ +L V G +L + T +G+T LH +
Sbjct: 169 DETALHLAVRSVDRTSL-HIVDFL--VQNSG------NLDKQTG-KGSTALHYCCLTDNA 218
Query: 136 RVIRILVEKDSVPSSYINKAYQTPLSIA 163
+++L+ + N++ +TPL IA
Sbjct: 219 ECLKLLL-RGKASIEIANESGETPLDIA 245
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
LH A +G+ ++ + L++ + D +G TPLH AA ++V K L+
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNG 329
G+ +++ +I + D + N+ + LH A G+ IV F++ + +N D +G
Sbjct: 48 GEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLV---QFGVNVNAADSDG 103
Query: 330 NTPLHLAA 337
TPLH AA
Sbjct: 104 WTPLHCAA 111
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
LH A +G+ ++ + L++ + D +G TPLH AA ++V K L+
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNG 329
G+ +++ +I + D + N+ + LH A G+ IV F++ + +N D +G
Sbjct: 48 GEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLV---QFGVNVNAADSDG 103
Query: 330 NTPLHLAA 337
TPLH AA
Sbjct: 104 WTPLHCAA 111
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 329 GNTPLHLAAMGLHSDVV--FTLSRHKSVNIRAKNHSARSNTALE----IAEITRANGKEI 382
G PL LAA +V T + HK ++R ++ +R NT L IA+ TR N K +
Sbjct: 138 GELPLSLAACTNQPHIVNYLTENPHKKADMRRQD--SRGNTVLHALVAIADNTRENTKFV 195
Query: 383 QKHLTLKALKTA 394
K L LK A
Sbjct: 196 TKMYDLLLLKCA 207
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 329 GNTPLHLAAMGLHSDVVFTLSR--HKSVNIRAKNHSARSNTALE----IAEITRANGKEI 382
G PL LAA +V L+ HK ++R ++ +R NT L IA+ TR N K +
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQD--SRGNTVLHALVAIADNTRENTKFV 197
Query: 383 QKHLTLKALKTA 394
K L +K A
Sbjct: 198 TKMYDLLLIKCA 209
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 210 ILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE-ESKRLAYKRDCNGETPLHLAAE 268
+L T+ E++ + AA +G++ + RL E + LAAE
Sbjct: 113 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAE 172
Query: 269 NGKLKVLKLLINKYPD--AIEIRNNSDRSILHVAAKHGNWNIVSFILRSP 316
NG L VL L P I+ + + A G+ N+++F+L P
Sbjct: 173 NGHLHVLNRLCELAPTEATAXIQAENYYAFRWAAVGRGHHNVINFLLDCP 222
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion
Activity Of Longin Domain Snare Ykt6
Length = 199
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNP--LHYAAASGNVKMAQ 242
R + ++ K+L + +DR+DW +P +HY A G++ Q
Sbjct: 89 RVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTALDGHLSRYQ 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,710,008
Number of Sequences: 62578
Number of extensions: 549219
Number of successful extensions: 2166
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 484
length of query: 580
length of database: 14,973,337
effective HSP length: 104
effective length of query: 476
effective length of database: 8,465,225
effective search space: 4029447100
effective search space used: 4029447100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)