Query 045393
Match_columns 580
No_of_seqs 608 out of 3657
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 22:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 8.3E-56 2.8E-60 459.4 40.0 356 3-399 16-371 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 8.9E-55 3.1E-59 451.6 40.7 352 3-395 49-400 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 4.4E-44 1.5E-48 357.8 30.8 295 31-360 22-331 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 1.7E-43 5.7E-48 355.7 29.9 302 3-351 26-331 (351)
5 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-43 3.7E-48 357.1 25.2 312 30-397 20-334 (351)
6 4g8k_A 2-5A-dependent ribonucl 100.0 3.4E-42 1.2E-46 344.2 32.9 285 3-318 27-326 (337)
7 1wdy_A 2-5A-dependent ribonucl 100.0 1.2E-42 4.1E-47 338.7 28.3 275 33-361 4-284 (285)
8 1wdy_A 2-5A-dependent ribonucl 100.0 4E-40 1.4E-44 320.8 32.5 271 3-326 7-283 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 2.3E-41 8E-46 342.3 18.4 310 2-351 38-368 (373)
10 3d9h_A CDNA FLJ77766, highly s 100.0 1.9E-40 6.6E-45 322.7 23.2 269 30-357 11-281 (285)
11 2xai_A ASB-9, ankyrin repeat a 100.0 2.9E-40 1E-44 317.4 23.0 253 33-350 2-259 (261)
12 2fo1_E LIN-12 protein; beta-ba 100.0 3.2E-40 1.1E-44 334.0 18.5 277 6-317 71-370 (373)
13 3ljn_A Hypothetical protein; a 100.0 7.1E-40 2.4E-44 331.0 16.7 270 68-359 12-318 (364)
14 1oy3_D Transcription factor in 100.0 7.6E-39 2.6E-43 311.4 21.6 266 69-376 2-269 (282)
15 3d9h_A CDNA FLJ77766, highly s 100.0 1.2E-38 4E-43 310.1 22.1 258 119-398 12-280 (285)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 1.4E-38 4.9E-43 304.1 21.7 229 116-351 4-245 (253)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 2.3E-38 8E-43 302.7 22.4 231 69-316 3-246 (253)
18 3ljn_A Hypothetical protein; a 100.0 4.1E-39 1.4E-43 325.4 17.6 262 28-316 14-312 (364)
19 2xai_A ASB-9, ankyrin repeat a 100.0 6.3E-38 2.2E-42 301.1 21.3 239 121-374 2-247 (261)
20 1oy3_D Transcription factor in 100.0 1.9E-37 6.7E-42 301.4 21.7 269 28-342 3-271 (282)
21 3b7b_A Euchromatic histone-lys 100.0 8.8E-37 3E-41 288.8 24.9 226 116-349 5-230 (237)
22 1k1a_A B-cell lymphoma 3-encod 100.0 3.6E-37 1.2E-41 292.2 21.4 232 69-351 2-238 (241)
23 3b7b_A Euchromatic histone-lys 100.0 1.4E-36 4.6E-41 287.5 25.1 228 69-314 4-231 (237)
24 1k1a_A B-cell lymphoma 3-encod 100.0 8.3E-37 2.8E-41 289.8 21.0 214 116-374 3-225 (241)
25 1s70_B 130 kDa myosin-binding 100.0 5.3E-37 1.8E-41 301.2 18.3 274 7-351 4-286 (299)
26 3aji_A 26S proteasome non-ATPa 100.0 6.6E-36 2.3E-40 281.6 24.7 224 32-315 4-227 (231)
27 3aji_A 26S proteasome non-ATPa 100.0 8.6E-36 2.9E-40 280.8 24.5 228 119-397 3-230 (231)
28 1s70_B 130 kDa myosin-binding 100.0 4.1E-37 1.4E-41 301.9 15.4 271 40-374 4-274 (299)
29 4b93_B Ankyrin repeat domain-c 100.0 1.1E-36 3.6E-41 292.8 14.7 224 70-304 5-229 (269)
30 2dzn_A Probable 26S proteasome 100.0 1.9E-35 6.6E-40 277.8 21.4 212 122-338 2-217 (228)
31 2dzn_A Probable 26S proteasome 100.0 1.3E-35 4.6E-40 278.9 19.5 211 156-374 2-217 (228)
32 3eu9_A Huntingtin-interacting 100.0 1.3E-34 4.6E-39 274.2 24.9 228 70-315 3-232 (240)
33 3kea_A K1L; tropism, ANK repea 100.0 2.2E-35 7.4E-40 286.9 19.1 236 9-316 7-244 (285)
34 3eu9_A Huntingtin-interacting 100.0 1.4E-34 4.7E-39 274.1 22.9 227 117-351 4-232 (240)
35 4b93_B Ankyrin repeat domain-c 100.0 9.8E-36 3.4E-40 286.1 14.5 220 117-373 6-226 (269)
36 3kea_A K1L; tropism, ANK repea 100.0 1.6E-34 5.3E-39 280.9 21.6 236 69-374 24-261 (285)
37 2f8y_A Notch homolog 1, transl 100.0 1.8E-34 6.3E-39 270.2 20.1 215 133-355 2-216 (223)
38 2f8y_A Notch homolog 1, transl 100.0 3.6E-34 1.2E-38 268.2 21.0 215 87-318 2-216 (223)
39 1sw6_A Regulatory protein SWI6 100.0 5.2E-36 1.8E-40 297.2 7.9 292 33-373 22-324 (327)
40 1sw6_A Regulatory protein SWI6 100.0 2.5E-35 8.5E-40 292.4 6.2 284 10-340 28-327 (327)
41 1ikn_D Protein (I-kappa-B-alph 100.0 1.9E-33 6.4E-38 265.8 11.2 223 71-336 3-226 (236)
42 1ikn_D Protein (I-kappa-B-alph 100.0 4.4E-33 1.5E-37 263.2 11.2 215 117-374 3-228 (236)
43 2rfa_A Transient receptor pote 100.0 2.1E-31 7.4E-36 250.9 22.7 197 190-400 2-225 (232)
44 2rfa_A Transient receptor pote 100.0 3.2E-31 1.1E-35 249.7 23.2 211 33-284 2-222 (232)
45 3hra_A Ankyrin repeat family p 100.0 1.5E-30 5.1E-35 239.3 23.5 192 120-350 3-199 (201)
46 3hra_A Ankyrin repeat family p 100.0 1.5E-30 5E-35 239.3 22.6 180 190-375 4-188 (201)
47 2pnn_A Transient receptor pote 100.0 3.1E-31 1.1E-35 256.3 15.6 220 117-369 8-271 (273)
48 2pnn_A Transient receptor pote 100.0 7.4E-31 2.5E-35 253.7 18.0 236 27-296 6-270 (273)
49 2etb_A Transient receptor pote 100.0 9.5E-31 3.2E-35 250.4 17.6 199 190-400 1-249 (256)
50 4gpm_A Engineered protein OR26 100.0 1.9E-30 6.4E-35 230.1 18.1 159 193-358 6-164 (169)
51 4gpm_A Engineered protein OR26 100.0 2.2E-30 7.7E-35 229.6 18.3 156 3-181 6-161 (169)
52 2etb_A Transient receptor pote 100.0 4.7E-30 1.6E-34 245.6 17.5 216 34-284 2-246 (256)
53 3jxi_A Vanilloid receptor-rela 100.0 2.1E-29 7.1E-34 241.7 14.7 200 190-401 4-254 (260)
54 3v30_A DNA-binding protein rfx 100.0 6.2E-29 2.1E-33 222.3 16.2 170 191-368 2-171 (172)
55 3jxi_A Vanilloid receptor-rela 100.0 4.4E-29 1.5E-33 239.4 14.9 213 73-318 2-250 (260)
56 2aja_A Ankyrin repeat family p 100.0 9.9E-31 3.4E-35 261.5 0.6 298 10-375 43-359 (376)
57 4hbd_A KN motif and ankyrin re 100.0 1.1E-28 3.8E-33 238.3 14.0 189 193-394 78-272 (276)
58 4hbd_A KN motif and ankyrin re 100.0 7.2E-29 2.4E-33 239.6 12.4 190 159-354 79-275 (276)
59 2aja_A Ankyrin repeat family p 100.0 1.7E-30 5.8E-35 259.8 0.6 219 44-309 44-270 (376)
60 2rfm_A Putative ankyrin repeat 100.0 5.7E-28 2E-32 220.2 16.5 164 217-395 27-190 (192)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.6E-27 9E-32 209.5 17.7 156 2-180 6-161 (162)
62 2rfm_A Putative ankyrin repeat 99.9 1.7E-27 5.8E-32 217.1 15.6 157 190-352 34-190 (192)
63 3v31_A Ankyrin repeat family A 99.9 2.4E-27 8.1E-32 210.9 16.1 158 225-397 3-160 (167)
64 3v30_A DNA-binding protein rfx 99.9 5.7E-27 1.9E-31 209.5 17.5 168 158-332 4-171 (172)
65 3v31_A Ankyrin repeat family A 99.9 5.2E-27 1.8E-31 208.7 16.9 156 190-351 2-157 (167)
66 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.6E-27 8.7E-32 209.5 14.6 159 190-355 4-162 (162)
67 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.5E-26 5.1E-31 206.1 19.2 151 4-177 17-167 (169)
68 3f6q_A Integrin-linked protein 99.9 2.7E-27 9.3E-32 213.1 13.9 166 190-361 4-169 (179)
69 2y1l_E Darpin-8.4; hydrolase-i 99.9 1E-26 3.6E-31 207.1 17.4 156 190-351 13-168 (169)
70 2vge_A RELA-associated inhibit 99.9 1.4E-29 5E-34 237.0 -1.4 207 92-350 1-209 (229)
71 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1E-26 3.5E-31 204.3 16.1 154 191-351 2-155 (156)
72 1awc_B Protein (GA binding pro 99.9 4E-26 1.4E-30 199.7 18.4 150 2-175 3-152 (153)
73 3f6q_A Integrin-linked protein 99.9 9.9E-27 3.4E-31 209.4 14.5 164 223-400 3-166 (179)
74 1awc_B Protein (GA binding pro 99.9 2.1E-26 7.1E-31 201.6 16.2 150 192-348 3-152 (153)
75 3twr_A Tankyrase-2; ankyrin re 99.9 2.6E-27 8.9E-32 210.2 10.5 156 190-351 7-162 (165)
76 3twr_A Tankyrase-2; ankyrin re 99.9 9.6E-27 3.3E-31 206.5 13.3 160 152-316 4-163 (165)
77 2vge_A RELA-associated inhibit 99.9 2.2E-29 7.5E-34 235.8 -4.8 142 17-180 1-147 (229)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.2E-25 7.4E-30 195.8 18.1 151 3-178 4-155 (156)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 5.7E-26 2E-30 214.5 7.9 176 190-373 4-189 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-25 3.9E-30 212.5 8.5 207 156-373 5-226 (239)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 3.1E-25 1.1E-29 194.7 9.1 147 218-373 5-152 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 8.7E-25 3E-29 187.0 10.8 133 216-355 3-136 (136)
83 3t8k_A Uncharacterized protein 99.9 4.7E-25 1.6E-29 198.7 7.4 161 191-360 6-184 (186)
84 3t8k_A Uncharacterized protein 99.9 9.7E-25 3.3E-29 196.7 8.7 159 225-398 6-180 (186)
85 1d9s_A Cyclin-dependent kinase 99.9 1.1E-23 3.7E-28 180.2 12.4 130 27-180 5-135 (136)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 2.3E-23 7.8E-28 182.7 11.2 140 190-336 11-151 (156)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.9E-23 3.1E-27 171.8 13.7 126 224-355 1-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 4.7E-23 1.6E-27 176.1 12.0 126 221-351 10-135 (136)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 6.9E-23 2.4E-27 175.1 13.0 127 30-179 10-136 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.1E-22 1.1E-26 168.4 15.7 125 33-180 1-125 (126)
91 3c5r_A BARD-1, BRCA1-associate 99.9 9.8E-23 3.4E-27 174.4 7.8 127 220-351 5-131 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1.2E-22 4.1E-27 173.9 8.4 126 254-393 5-130 (137)
93 3deo_A Signal recognition part 99.9 2.1E-23 7.1E-28 188.3 3.0 140 31-213 41-181 (183)
94 2b0o_E UPLC1; arfgap, structur 99.9 2.2E-21 7.5E-26 188.9 17.4 140 190-341 150-298 (301)
95 3ui2_A Signal recognition part 99.9 1.1E-22 3.7E-27 192.4 5.0 171 32-248 13-183 (244)
96 3aaa_C Myotrophin, protein V-1 99.9 7.6E-22 2.6E-26 165.4 8.8 109 223-336 5-113 (123)
97 3ui2_A Signal recognition part 99.9 1.6E-21 5.5E-26 184.4 11.7 142 223-397 43-185 (244)
98 3aaa_C Myotrophin, protein V-1 99.8 1.8E-21 6.1E-26 163.1 9.6 116 30-168 3-118 (123)
99 3ehr_A Osteoclast-stimulating 99.8 4E-22 1.4E-26 185.9 5.7 136 220-361 68-204 (222)
100 3deo_A Signal recognition part 99.8 3.8E-21 1.3E-25 173.4 11.8 138 190-351 43-181 (183)
101 2b0o_E UPLC1; arfgap, structur 99.8 2.3E-21 8E-26 188.7 11.1 150 30-204 147-299 (301)
102 1dcq_A PYK2-associated protein 99.8 2.7E-20 9.1E-25 179.1 14.9 122 226-351 131-260 (278)
103 1dcq_A PYK2-associated protein 99.8 7.2E-20 2.5E-24 176.1 16.4 193 118-317 62-262 (278)
104 3jue_A Arfgap with coiled-coil 99.8 3.9E-20 1.3E-24 184.0 11.6 147 221-374 195-346 (368)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1E-19 3.4E-24 144.0 11.1 93 33-147 1-93 (93)
106 3ehr_A Osteoclast-stimulating 99.8 4.5E-20 1.6E-24 171.9 8.7 127 190-319 72-199 (222)
107 3lvq_E ARF-GAP with SH3 domain 99.8 2.1E-19 7.3E-24 188.0 14.5 124 4-149 135-267 (497)
108 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-19 5.7E-24 188.8 13.5 138 226-371 133-279 (497)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2E-19 6.9E-24 142.2 10.4 90 258-351 1-90 (93)
110 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-19 3.7E-24 150.2 8.5 109 254-369 4-112 (115)
111 3jue_A Arfgap with coiled-coil 99.8 2.6E-19 8.8E-24 178.2 12.1 148 190-340 198-348 (368)
112 2l6b_A NR1C; ankyrin, consensu 99.8 6.4E-19 2.2E-23 145.5 7.7 109 220-333 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1E-16 3.4E-21 131.0 8.9 90 255-348 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.8E-16 6.2E-21 129.4 9.3 93 218-312 17-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 59.9 11 0.00038 36.3 5.6 97 254-350 212-317 (351)
116 3gvo_A Pumilio 2, pumilio homo 55.4 22 0.00074 34.2 6.8 94 221-314 213-317 (351)
117 3k49_A MRNA-binding protein PU 50.6 21 0.00073 34.6 5.9 62 71-142 73-134 (369)
118 3mkq_B Coatomer subunit alpha; 45.4 95 0.0033 26.2 8.3 131 3-179 10-141 (177)
119 1gp8_A Protein (scaffolding pr 43.8 20 0.00069 21.4 2.6 18 3-20 15-32 (40)
120 3k49_A MRNA-binding protein PU 30.9 75 0.0026 30.6 6.3 87 5-97 46-135 (369)
121 4ev6_A Magnesium transport pro 22.0 1.6E+02 0.0054 27.9 6.6 21 508-528 281-301 (339)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.3e-56 Score=459.36 Aligned_cols=356 Identities=26% Similarity=0.344 Sum_probs=315.6
Q ss_pred HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393 3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI 82 (580)
Q Consensus 3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~ 82 (580)
++|+.|+..|+.+++++|++.+...+..+..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---------VNAKAKDDQTPLHC 86 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---------SSCCCTTSCCHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---------CCCCCCCCCCHHHH
Confidence 589999999999999999999877777889999999999999999999999999998 88999999999999
Q ss_pred HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393 83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI 162 (580)
Q Consensus 83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 162 (580)
|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++++.. ..+..|.||||+
T Consensus 87 A~~~g~~~~v~~Ll~~ga~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~ 152 (437)
T 1n11_A 87 AARIGHTNMVKLLLENNANPN-------------LATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHV 152 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCTT-------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHH
T ss_pred HHHCCCHHHHHHHHhCCCCCC-------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHH
Confidence 999999999999999998876 467889999999999999999999999988765 467788999999
Q ss_pred HHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHH
Q 045393 163 AIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242 (580)
Q Consensus 163 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~ 242 (580)
|+..|+.+++++|++++. +++..+. .|.||||.|+..++.++++.|++.+.. ++..+..|.||||+|+..|+.++++
T Consensus 153 A~~~g~~~~v~~Ll~~g~-~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 153 AAKYGKVRVAELLLERDA-HPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp HHHTTCHHHHHHHHHTTC-CTTCCCS-SCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCC-CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999874 4444554 788999999999999999999988776 7778888999999999999999999
Q ss_pred HHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhc
Q 045393 243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI 322 (580)
Q Consensus 243 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~ 322 (580)
+|++.|++. +..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++ +.++
T Consensus 230 ~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~ 304 (437)
T 1n11_A 230 SLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH---GVMV 304 (437)
T ss_dssp HHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH---TCCT
T ss_pred HHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CccC
Confidence 999998876 66788899999999999999999999999888 788889999999999999999999999987 4458
Q ss_pred ccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhhhh
Q 045393 323 NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRA 399 (580)
Q Consensus 323 n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~ 399 (580)
+.+|..|+||||+|+..|+.+++++|+++ |+|+|.+|. .|+|||++|.. ....+++++|+++|++..
T Consensus 305 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~--~g~t~L~~A~~-------~g~~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 305 DATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTK--LGYSPLHQAAQ-------QGHTDIVTLLLKNGASPN 371 (437)
T ss_dssp TCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHH-------TTCHHHHHHHHHTTCCSC
T ss_pred CCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCC--CCCCHHHHHHH-------CChHHHHHHHHHCcCCCC
Confidence 88999999999999999999999999875 889999998 89999999987 456788899999888754
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.9e-55 Score=451.60 Aligned_cols=352 Identities=25% Similarity=0.319 Sum_probs=325.3
Q ss_pred HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393 3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI 82 (580)
Q Consensus 3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~ 82 (580)
++|+.|++.|+.+++++|++.+...+..+.+|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+
T Consensus 49 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------~~~~~~~g~t~L~~ 119 (437)
T 1n11_A 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN---------PNLATTAGHTPLHI 119 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTCCCHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC---------CCCCCCCCCcHHHH
Confidence 689999999999999999999987777899999999999999999999999999998 88899999999999
Q ss_pred HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393 83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI 162 (580)
Q Consensus 83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 162 (580)
|+..|+.+++++|++++++.+ ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||.
T Consensus 120 A~~~g~~~~v~~Ll~~~~~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~ 185 (437)
T 1n11_A 120 AAREGHVETVLALLEKEASQA-------------CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHV 185 (437)
T ss_dssp HHHHTCHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCc-------------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHH
Confidence 999999999999999988754 467889999999999999999999999999887 578899999999
Q ss_pred HHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHH
Q 045393 163 AIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242 (580)
Q Consensus 163 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~ 242 (580)
|+..++.+++++|++++.. +...+. .|.||||.|+..++.++++.|++.+.. ++..+..|.||||+|+..|+.++++
T Consensus 186 A~~~~~~~~v~~Ll~~g~~-~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~ 262 (437)
T 1n11_A 186 AVHHNNLDIVKLLLPRGGS-PHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVA 262 (437)
T ss_dssp HHHTTCHHHHHHHGGGTCC-SCCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCC-CCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999999854 444444 899999999999999999999998876 8888999999999999999999999
Q ss_pred HHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhc
Q 045393 243 RLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLI 322 (580)
Q Consensus 243 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~ 322 (580)
+|++++++. +..+..|.||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+.+|+.+++++|+++ ++++
T Consensus 263 ~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~ 337 (437)
T 1n11_A 263 LLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADV 337 (437)
T ss_dssp HHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT---TCCT
T ss_pred HHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc---CCCC
Confidence 999999887 77899999999999999999999999999999 899999999999999999999999999999 4559
Q ss_pred ccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhh
Q 045393 323 NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAY 395 (580)
Q Consensus 323 n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~g 395 (580)
|.+|..|+||||+|+..|+.+++++|+++ |++++.+|. +|+||+++|.. .+...+.++|....
T Consensus 338 n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~--~g~t~l~~A~~-------~g~~~~~~~l~~~~ 400 (437)
T 1n11_A 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSS--DGTTPLAIAKR-------LGYISVTDVLKVVT 400 (437)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCS--SSCCHHHHHHH-------TTCHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHCChHHHHHHHHHC-cCCCCCCCC--CCCCHHHHHHH-------cCcHHHHHHHHhcc
Confidence 99999999999999999999999999975 999999999 99999999988 34456666666543
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.4e-44 Score=357.84 Aligned_cols=295 Identities=16% Similarity=0.150 Sum_probs=259.9
Q ss_pred CCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccC-CCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393 31 SPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNL-MDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP 109 (580)
Q Consensus 31 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 109 (580)
+.+|+|+||.|++.|+.++|++||++|++ ++.++. .|+||||+|+..|+.++|++|+++|++++
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad---------vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~------ 86 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN---------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV------ 86 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCC---------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCC---------CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh------
Confidence 34578999999999999999999999998 777765 59999999999999999999999999876
Q ss_pred hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcC-----
Q 045393 110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLN----- 184 (580)
Q Consensus 110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~----- 184 (580)
.++..+.+|++.++..+..+++..+++.+.+.+ ..+..|.||+++|+..|+.++++++++++.....
T Consensus 87 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~ 158 (337)
T 4g8k_A 87 -------LRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 158 (337)
T ss_dssp -------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC
T ss_pred -------hhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccc
Confidence 478899999999999999999999999999887 5789999999999999999999999998853211
Q ss_pred ----CCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC----hHHHHHHHHhchhcccccC
Q 045393 185 ----TTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN----VKMAQRLLEESKRLAYKRD 256 (580)
Q Consensus 185 ----~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~ 256 (580)
..+. .|.||||.|+..|+.++++.|+++.+.+++..|..|.|+++.++..++ .+++++|+++|+++ +.++
T Consensus 159 ~~~~~~~~-~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d 236 (337)
T 4g8k_A 159 EDQERLRK-GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRG 236 (337)
T ss_dssp -----CTT-CSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCC
T ss_pred cccccccC-CCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcC
Confidence 1222 689999999999999999999988767799999999999998887654 46889999999988 7789
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHh-CCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHH
Q 045393 257 CNGETPLHLAAENGKLKVLKLLINK-YPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHL 335 (580)
Q Consensus 257 ~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~ 335 (580)
..|.||||+|+..|+.++++.|++. +.+ ++.+|.+|+||||+|+++|+.+++++|+++|+ ++| +.||||+
T Consensus 237 ~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA---d~n-----~~~~L~~ 307 (337)
T 4g8k_A 237 ERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGA---STD-----CGDLVMT 307 (337)
T ss_dssp GGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC---SST-----TCCHHHH
T ss_pred CCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC---CCC-----CCCHHHH
Confidence 9999999999999999999999986 455 89999999999999999999999999999954 355 4569999
Q ss_pred HHhcCChhHHHHhhcCccccccccc
Q 045393 336 AAMGLHSDVVFTLSRHKSVNIRAKN 360 (580)
Q Consensus 336 A~~~~~~~~~~~Ll~~~~~d~~~~n 360 (580)
|+.+|+.+++++|+++ |+|+|...
T Consensus 308 A~~~~~~~iv~~Ll~~-GA~~d~~~ 331 (337)
T 4g8k_A 308 ARRNYDHSLVKVLLSH-GAKEDFHP 331 (337)
T ss_dssp HHHTTCHHHHHHHHHT-TCCC----
T ss_pred HHHcCCHHHHHHHHHC-cCCCCCCC
Confidence 9999999999999976 99998743
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.7e-43 Score=355.71 Aligned_cols=302 Identities=21% Similarity=0.256 Sum_probs=208.5
Q ss_pred HHHHHHHHcCCHHHHHHHhhh-cCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393 3 QELLEVLRHGDEYKIKQLALR-QDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH 81 (580)
Q Consensus 3 ~~L~~A~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh 81 (580)
++|+.|++.|+.+.+++++.. +...+..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~ 96 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD---------VHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCCHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCccCCCCCcHHH
Confidence 467777777777777777765 344445666777777777777777777777777776 6667777777777
Q ss_pred HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393 82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (580)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 161 (580)
+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|+++. ..+..|.+|++
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~ 162 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVN-------------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVD 162 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchH
Confidence 7777777777777777776654 356677777777777777777777777777665 45667777777
Q ss_pred HHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHc---CCh
Q 045393 162 IAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS---GNV 238 (580)
Q Consensus 162 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~---g~~ 238 (580)
.|+..+..+.+++... ..++..++..++.+.+..++..... ....+..|.||||+|+.. ++.
T Consensus 163 ~a~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~ 227 (351)
T 3utm_A 163 MAPTPELRERLTYEFK--------------GHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRK 227 (351)
T ss_dssp HCSSHHHHHHHHHHHH--------------HHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHH
T ss_pred HHhhhhhHHHHHhhhc--------------ccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHH
Confidence 7766666666555432 2345666667777777777666544 334556677777777777 446
Q ss_pred HHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcch
Q 045393 239 KMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318 (580)
Q Consensus 239 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 318 (580)
+++++|++.|+++ +.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus 228 ~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-- 303 (351)
T 3utm_A 228 QVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYG-- 303 (351)
T ss_dssp HHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--
T ss_pred HHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC--
Confidence 7777777777666 55666777777777777777777777777777 6777777777777777777777777777763
Q ss_pred hhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393 319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (580)
Q Consensus 319 ~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~ 351 (580)
++++.+|..|.||+|+| +.+++++|.+.
T Consensus 304 -ad~~~~~~~g~tal~~a----~~~~~~~l~~~ 331 (351)
T 3utm_A 304 -SDPSIISLQGFTAAQMG----NEAVQQILSES 331 (351)
T ss_dssp -CCTTCCCTTSCCHHHHS----CHHHHHHHHHC
T ss_pred -CCCCCcCCCCCChhhhh----hHHHHHHHHhc
Confidence 34677777777777776 44556666544
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-43 Score=357.08 Aligned_cols=312 Identities=19% Similarity=0.204 Sum_probs=274.2
Q ss_pred cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393 30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP 109 (580)
Q Consensus 30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 109 (580)
.+..+.++||.|+..|+.+.++.|+..... .++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~--------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------ 85 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALLTPLNV--------NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH------ 85 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHCCTTTT--------TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------
T ss_pred eccccchhHHHHHHcCCHHHHHHHHHhcCC--------CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------
Confidence 455688999999999999999999987443 488899999999999999999999999999998876
Q ss_pred hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCC
Q 045393 110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLP 189 (580)
Q Consensus 110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 189 (580)
.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++. +++..+.
T Consensus 86 -------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~- 155 (351)
T 3utm_A 86 -------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGA-DPTLVNC- 155 (351)
T ss_dssp -------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCT-
T ss_pred -------ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCccccC-
Confidence 478899999999999999999999999999887 578899999999999999999999999985 4445555
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 269 (580)
.|.+|++.++..+..+.+...... +++..++..++.+.++.++..+... ...+..|.||||+|+..
T Consensus 156 ~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~ 221 (351)
T 3utm_A 156 HGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVAS 221 (351)
T ss_dssp TSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHC
T ss_pred CCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHH
Confidence 899999999988777776665432 5788899999999999999887654 55678899999999999
Q ss_pred ---CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHH
Q 045393 270 ---GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346 (580)
Q Consensus 270 ---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~ 346 (580)
++.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++++ .++|.+|..|+||||+|+..|+.++++
T Consensus 222 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~n~~d~~g~t~L~~A~~~~~~~~v~ 297 (351)
T 3utm_A 222 LHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALDSLGQTALHRAALAGHLQTCR 297 (351)
T ss_dssp CSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred hCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 668999999999999 8999999999999999999999999999984 559999999999999999999999999
Q ss_pred HhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhh
Q 045393 347 TLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAK 397 (580)
Q Consensus 347 ~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~ 397 (580)
+|+++ |+|++.+|. .|+||+++|.. .+.++|.+.+..
T Consensus 298 ~Ll~~-gad~~~~~~--~g~tal~~a~~-----------~~~~~l~~~~~~ 334 (351)
T 3utm_A 298 LLLSY-GSDPSIISL--QGFTAAQMGNE-----------AVQQILSESTPM 334 (351)
T ss_dssp HHHHT-TCCTTCCCT--TSCCHHHHSCH-----------HHHHHHHHC---
T ss_pred HHHHc-CCCCCCcCC--CCCChhhhhhH-----------HHHHHHHhcccc
Confidence 99976 999999999 99999999855 556666665543
No 6
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.4e-42 Score=344.18 Aligned_cols=285 Identities=18% Similarity=0.220 Sum_probs=252.9
Q ss_pred HHHHHHHHcCCHHHHHHHhhhcCcccccCC-CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393 3 QELLEVLRHGDEYKIKQLALRQDIFSTSSP-GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH 81 (580)
Q Consensus 3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh 81 (580)
++|+.|++.||+++|++|++.|...+..+. .|+||||+|+..|+.++|++|+++|++ ++.++..+.+|++
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~---------~~~~~~~~~~~~~ 97 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---------PVLRKKNGATPFI 97 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc---------hhhhccCCCchhH
Confidence 579999999999999999999976665554 599999999999999999999999998 8889999999999
Q ss_pred HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc---------cc
Q 045393 82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS---------YI 152 (580)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~---------~~ 152 (580)
.++..++.+++..+++.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++. ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~-------------~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~ 164 (337)
T 4g8k_A 98 LAAIAGSVKLLKLFLSKGADVN-------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL 164 (337)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT-------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----C
T ss_pred HHHhcccchhhHHhhhccchhh-------------hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccc
Confidence 9999999999999999998865 5789999999999999999999999999987653 23
Q ss_pred ccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCC----HHHHHHHHhhCCccccccCCCCChH
Q 045393 153 NKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQN----YDIMVKILGTNKELIDRLDWHQRNP 228 (580)
Q Consensus 153 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~d~~g~t~ 228 (580)
+..|.||||+|+..|+.+++++|+++...+++..+. .|.++++.++..++ ..+++.|++.+.+ ++.+|..|+||
T Consensus 165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~ 242 (337)
T 4g8k_A 165 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTP 242 (337)
T ss_dssp TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCH
T ss_pred cCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCH
Confidence 557899999999999999999999875566777776 89999998876554 3466777777665 89999999999
Q ss_pred HHHHHHcCChHHHHHHHHh-chhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHH
Q 045393 229 LHYAAASGNVKMAQRLLEE-SKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN 307 (580)
Q Consensus 229 L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 307 (580)
||+|+..|+.++++.|++. +.++ +.+|..|.||||+|++.|+.+++++|+++|++ ++ +.+|||+|+++|+.+
T Consensus 243 L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~n-----~~~~L~~A~~~~~~~ 315 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKRGAS-TD-----CGDLVMTARRNYDHS 315 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTSTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-ST-----TCCHHHHHHHTTCHH
T ss_pred HHHHHHhhhhHHHHHHHHhcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CC-----CCCHHHHHHHcCCHH
Confidence 9999999999999999986 4555 78899999999999999999999999999998 44 457999999999999
Q ss_pred HHHHHhcCcch
Q 045393 308 IVSFILRSPEM 318 (580)
Q Consensus 308 iv~~Ll~~~~~ 318 (580)
++++|+++|++
T Consensus 316 iv~~Ll~~GA~ 326 (337)
T 4g8k_A 316 LVKVLLSHGAK 326 (337)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHCcCC
Confidence 99999999654
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-42 Score=338.66 Aligned_cols=275 Identities=20% Similarity=0.201 Sum_probs=238.6
Q ss_pred CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccc-cCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchh
Q 045393 33 GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQK-NLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVL 111 (580)
Q Consensus 33 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~-~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 111 (580)
+|+||||.|+..|+.+++++|+++|++ ++.. +..|.||||+|+..|+.+++++|+++|++++
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------- 66 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGAN---------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-------- 66 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC---------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc--------
Confidence 478999999999999999999999988 5555 7889999999999999999999999998865
Q ss_pred hhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE 191 (580)
Q Consensus 112 ~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 191 (580)
.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++... +.... .
T Consensus 67 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~- 137 (285)
T 1wdy_A 67 -----LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRK-T- 137 (285)
T ss_dssp -----CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCC-C-
T ss_pred -----ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccc-c-
Confidence 478899999999999999999999999999876 57888999999999999999999999988532 22211 0
Q ss_pred ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHh-chhcccccCCCCCcHHHHHHHcC
Q 045393 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE-SKRLAYKRDCNGETPLHLAAENG 270 (580)
Q Consensus 192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g 270 (580)
.......+..|.||||.|+..|+.+++++|++. +.++ +..+..|.||||.|+..+
T Consensus 138 -----------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~ 193 (285)
T 1wdy_A 138 -----------------------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSS 193 (285)
T ss_dssp -----------------------CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCS
T ss_pred -----------------------HHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHcc
Confidence 011334467889999999999999999999988 7666 777889999999999999
Q ss_pred c----HHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHH
Q 045393 271 K----LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346 (580)
Q Consensus 271 ~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~ 346 (580)
+ .+++++|+++|++ ++.+|..|+||||+|++.|+.+++++|++.. +.+++.+|..|+||||+|+..++.++++
T Consensus 194 ~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--g~~~~~~~~~g~t~l~~A~~~~~~~i~~ 270 (285)
T 1wdy_A 194 DDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAE 270 (285)
T ss_dssp CTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc--CCCccccCCCCCcHHHHHHHcCcHHHHH
Confidence 9 9999999999999 8899999999999999999999999999831 4458999999999999999999999999
Q ss_pred HhhcCcccccccccc
Q 045393 347 TLSRHKSVNIRAKNH 361 (580)
Q Consensus 347 ~Ll~~~~~d~~~~n~ 361 (580)
+|+++ |++++.+|.
T Consensus 271 ~Ll~~-Ga~~~~~d~ 284 (285)
T 1wdy_A 271 LLCKR-GASTDCGDL 284 (285)
T ss_dssp HHHHH-SSCSCCSSC
T ss_pred HHHHc-CCCCCcccc
Confidence 99975 999998874
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4e-40 Score=320.80 Aligned_cols=271 Identities=18% Similarity=0.201 Sum_probs=227.9
Q ss_pred HHHHHHHHcCCHHHHHHHhhhcCccccc-CCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393 3 QELLEVLRHGDEYKIKQLALRQDIFSTS-SPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH 81 (580)
Q Consensus 3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh 81 (580)
++|+.|++.|+.+++++|++.+...+.. +..|.||||+|+..|+.+++++|+++|.+ ++.+|..|.||||
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---------PVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---------CcccCCCCCCHHH
Confidence 6899999999999999999998555544 78899999999999999999999999998 8889999999999
Q ss_pred HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393 82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (580)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 161 (580)
+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|+++.... ... .
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~--~-- 139 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADVN-------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR-KTK--E-- 139 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTT-------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-CCC--H--
T ss_pred HHHHcCCHHHHHHHHHcCCCCC-------------ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccccc-ccH--H--
Confidence 9999999999999999998865 478899999999999999999999999998876321 110 0
Q ss_pred HHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC----
Q 045393 162 IAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN---- 237 (580)
Q Consensus 162 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~---- 237 (580)
.....+. .|.||||.|+..|+.+++++|++..+..++..|..|.||||+|+..++
T Consensus 140 --------------------~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~ 198 (285)
T 1wdy_A 140 --------------------DQERLRK-GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198 (285)
T ss_dssp --------------------HHHHTTC-CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH
T ss_pred --------------------HHHhhcc-CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH
Confidence 0000111 677777777777777777777777455577888888899999988888
Q ss_pred hHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHH-hCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCc
Q 045393 238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN-KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSP 316 (580)
Q Consensus 238 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 316 (580)
.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+++|+.+++++|+++|
T Consensus 199 ~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G 276 (285)
T 1wdy_A 199 EAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRG 276 (285)
T ss_dssp HHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence 88999999998887 6778889999999999999999999998 6666 8888999999999999999999999999884
Q ss_pred chhhhccccc
Q 045393 317 EMENLINLVD 326 (580)
Q Consensus 317 ~~~~~~n~~d 326 (580)
. +++.+|
T Consensus 277 a---~~~~~d 283 (285)
T 1wdy_A 277 A---STDCGD 283 (285)
T ss_dssp S---CSCCSS
T ss_pred C---CCCccc
Confidence 4 477666
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-41 Score=342.30 Aligned_cols=310 Identities=19% Similarity=0.261 Sum_probs=223.2
Q ss_pred CHHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393 2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH 81 (580)
Q Consensus 2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh 81 (580)
.++|+.++..|+.+.++.+++...... ...+++.-+...|+.+++++++. ..++..|.||||
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~g~t~L~ 99 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGNDFLGDFNHTNLQIP--------------TEPEPESPIKLH 99 (373)
T ss_dssp --------------------------------------------------------------------------CCCHHH
T ss_pred ccccccccCCccccchhhhhhhhcccc----CccccCCCCCccccccccccccc--------------cCCCCCCccHHH
Confidence 456777888888888888877542211 12345666777888888887754 345788999999
Q ss_pred HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccC-CCCCcHHHHHHHcCcHHHHHHHH--------HcCCCCCccc
Q 045393 82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTD-IEGNTPLHNAVTNQHKRVIRILV--------EKDSVPSSYI 152 (580)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d-~~g~tpL~~A~~~~~~~~v~~Ll--------~~~~~~~~~~ 152 (580)
.|+..++ ++++.|+.. ++ +..| ..|.||||+|+..|+.+++++|+ +.|++++ ..
T Consensus 100 ~Aa~~~~-~~~~~L~~~--~~-------------n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~~ 162 (373)
T 2fo1_E 100 TEAAGSY-AITEPITRE--SV-------------NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AM 162 (373)
T ss_dssp HHHHSSS-CCCSCCSTT--TT-------------TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CC
T ss_pred HHhcCCc-hHHHHhccc--cc-------------cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-CC
Confidence 9999554 777777542 22 2455 78999999999999988877776 7898887 57
Q ss_pred ccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCC--ccccccCCCCChHHH
Q 045393 153 NKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNK--ELIDRLDWHQRNPLH 230 (580)
Q Consensus 153 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~--~~~~~~d~~g~t~L~ 230 (580)
|..|.||||+|+..|+.+++++|++++. +++..+. .|.||||.|+..|+.++++.|++.+. ..++..|..|.||||
T Consensus 163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~ 240 (373)
T 2fo1_E 163 DCDENTPLMLAVLARRRRLVAYLMKAGA-DPTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 240 (373)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred CCCCCCHHHHHHHcChHHHHHHHHHCCC-CCcccCC-CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence 8999999999999999999999999985 4455555 89999999999999999999998763 457888999999999
Q ss_pred HHHHcC---ChHHHHHHHHhchhccc-------ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHH
Q 045393 231 YAAASG---NVKMAQRLLEESKRLAY-------KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVA 300 (580)
Q Consensus 231 ~A~~~g---~~~~v~~Ll~~~~~~~~-------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 300 (580)
+|+..+ +.+++++|++.|+++.. ..+..|.||||+|+..|+.+++++|++++...++.+|..|+||||+|
T Consensus 241 ~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A 320 (373)
T 2fo1_E 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320 (373)
T ss_dssp HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHH
T ss_pred HHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHH
Confidence 999998 89999999999988732 25678999999999999999999999998444999999999999999
Q ss_pred HHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393 301 AKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (580)
Q Consensus 301 ~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~ 351 (580)
+.+|+.+++++|+++ +++++.+|..|+||||+|+.+|+.+++++|+++
T Consensus 321 ~~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 321 AQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp HHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 999999999999998 455999999999999999999999999999975
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=322.71 Aligned_cols=269 Identities=20% Similarity=0.213 Sum_probs=188.5
Q ss_pred cCCCCCchhhHHHhcCCHHHHHHHHhhCchhH--HhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCC
Q 045393 30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIA--LRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGP 107 (580)
Q Consensus 30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~ 107 (580)
.+..|.|+||+|+..|+.+.+..++..++... ...-...++.+|..|+||||+|+..|+.+++++|++.|++++
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~---- 86 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN---- 86 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC----
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC----
Confidence 45679999999999999888888777654300 000012356788999999999999999999999999998865
Q ss_pred cchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCC
Q 045393 108 APVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTR 187 (580)
Q Consensus 108 ~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 187 (580)
.+|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++... +
T Consensus 87 ---------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~--- 152 (285)
T 3d9h_A 87 ---------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q--- 152 (285)
T ss_dssp ---------EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S---
T ss_pred ---------CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C---
Confidence 478899999999999999999999999998876 56788888888888888888888888876421 1
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHH
Q 045393 188 LPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267 (580)
Q Consensus 188 ~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~ 267 (580)
. +..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+
T Consensus 153 --------------------------------~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 198 (285)
T 3d9h_A 153 --------------------------------P-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLAC 198 (285)
T ss_dssp --------------------------------C-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHH
T ss_pred --------------------------------C-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence 1 123678888888888888888888888776 667788888888888
Q ss_pred HcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHH
Q 045393 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347 (580)
Q Consensus 268 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~ 347 (580)
..|+.+++++|++++++ ++ .|..|+||||+|+..++.+++++|+++ +++++.+|.+|+||||+|+ ++.++++.
T Consensus 199 ~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~--~~~~~~~~ 271 (285)
T 3d9h_A 199 ENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMDF---GADTQAKNAEGKRPVELVP--PESPLAQL 271 (285)
T ss_dssp HTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGSC--TTSHHHHH
T ss_pred HcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHhc--CccHHHHH
Confidence 88888888888888888 55 378888888888888888888888887 4458888888888888888 45688888
Q ss_pred hhcCcccccc
Q 045393 348 LSRHKSVNIR 357 (580)
Q Consensus 348 Ll~~~~~d~~ 357 (580)
|+++.|+++.
T Consensus 272 Ll~~~~a~l~ 281 (285)
T 3d9h_A 272 FLEREGASLP 281 (285)
T ss_dssp HHHHC-----
T ss_pred HHHhhccCCC
Confidence 8877676654
No 11
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=317.39 Aligned_cols=253 Identities=17% Similarity=0.166 Sum_probs=194.9
Q ss_pred CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhh
Q 045393 33 GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE 112 (580)
Q Consensus 33 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 112 (580)
+|+||||+|+..|+.+++++|+++|.+ ++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------- 63 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA---------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN--------- 63 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC---------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC---------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------
Confidence 467788888888888888888877776 67777778888888888888888888887777654
Q ss_pred hhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCc
Q 045393 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDEL 192 (580)
Q Consensus 113 ~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 192 (580)
.+|..|.||||+|+..|+.+++++|+++|+++.. +..|.||||.|+..|+.+++++|++++
T Consensus 64 ----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g------------- 124 (261)
T 2xai_A 64 ----GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYG------------- 124 (261)
T ss_dssp ----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTCCHHHHHHHTTCHHHHHHHHHTT-------------
T ss_pred ----CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCcHHHHHHHHHcC-------------
Confidence 3667777888888887778888887777776542 333555555555555555555555443
Q ss_pred cHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcH
Q 045393 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKL 272 (580)
Q Consensus 193 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 272 (580)
.+ ++..|..|.||||+|+..|+.+++++|++.|+++. .+..|.||||+|+..|+.
T Consensus 125 ----------------------~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~Lh~A~~~~~~ 179 (261)
T 2xai_A 125 ----------------------GN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASE 179 (261)
T ss_dssp ----------------------CC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT--CCBTTBCHHHHHHHHTCH
T ss_pred ----------------------CC-CCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCChHHHHHHcCCH
Confidence 33 56677788999999999999999999999998874 377899999999999999
Q ss_pred HHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchh-----hhcccccCCCCcHHHHHHhcCChhHHHH
Q 045393 273 KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEME-----NLINLVDRNGNTPLHLAAMGLHSDVVFT 347 (580)
Q Consensus 273 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~-----~~~n~~d~~G~T~Lh~A~~~~~~~~~~~ 347 (580)
+++++|+++|++ ++.+|..|+||||+|+.++ +++++|++.+... ..++.+|..|+||+|.|.+...++.++.
T Consensus 180 ~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~ 256 (261)
T 2xai_A 180 ELACLLMDFGAD-TQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQ 256 (261)
T ss_dssp HHHHHHHHTTCC-TTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHH
T ss_pred HHHHHHHHcCCC-CCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHH
Confidence 999999999999 8999999999999999554 5899999875432 3577889999999999999888877776
Q ss_pred hhc
Q 045393 348 LSR 350 (580)
Q Consensus 348 Ll~ 350 (580)
++.
T Consensus 257 ~l~ 259 (261)
T 2xai_A 257 FLL 259 (261)
T ss_dssp HHT
T ss_pred HHh
Confidence 553
No 12
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-40 Score=333.99 Aligned_cols=277 Identities=21% Similarity=0.287 Sum_probs=226.0
Q ss_pred HHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhccccc-CCCCcHHHHHH
Q 045393 6 LEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKN-LMDETALHIAA 84 (580)
Q Consensus 6 ~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~~g~tpLh~Aa 84 (580)
..+...|+.+.++.++.. ..+..|.||||+|+..|+ +++++|++. + ++.+| ..|+||||+|+
T Consensus 71 ~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~---------~n~~d~~~g~t~Lh~Aa 133 (373)
T 2fo1_E 71 NGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEAAGSY-AITEPITRE--S---------VNIIDPRHNRTVLHWIA 133 (373)
T ss_dssp ----------------------------CCCHHHHHHHSSS-CCCSCCSTT--T---------TTTCCCSSCCCHHHHHH
T ss_pred CCCCcccccccccccccc-----CCCCCCccHHHHHhcCCc-hHHHHhccc--c---------ccccCCcCCCCHHHHHH
Confidence 345556788888777654 467889999999999654 888888653 3 56677 78999999999
Q ss_pred HhCCHHHHHHHH--------hcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCC
Q 045393 85 RIGDRAIVSEIM--------KYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY 156 (580)
Q Consensus 85 ~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 156 (580)
..|+.+++++|+ +.|++++ .+|..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus 134 ~~g~~~~v~~Ll~~~~~~ll~~ga~vn-------------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~g 199 (373)
T 2fo1_E 134 SNSSAEKSEDLIVHEAKECIAAGADVN-------------AMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSE 199 (373)
T ss_dssp CTTCCSCCTTHHHHHHHHHHHTCCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTC
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCCCCc-------------CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccCCCC
Confidence 999998888776 7787765 578899999999999999999999999999887 578899
Q ss_pred CCHHHHHHHcCcHHHHHHHHhcCC--CCcCCCCCCCCccHHHHHHHcC---CHHHHHHHHhhCCccccc--------cCC
Q 045393 157 QTPLSIAIDARLNDIACFIIDKSP--ESLNTTRLPDELTLIHFVVMRQ---NYDIMVKILGTNKELIDR--------LDW 223 (580)
Q Consensus 157 ~tpL~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~~--------~d~ 223 (580)
.||||+|+..|+.+++++|++++. .+.+..+. .|.||||.|+..+ +.++++.|++.+.. ++. .|.
T Consensus 200 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~ 277 (373)
T 2fo1_E 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKY 277 (373)
T ss_dssp CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-TSCCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSC
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC-CCCCHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccc
Confidence 999999999999999999999763 34455555 8999999999998 89999999999866 443 577
Q ss_pred CCChHHHHHHHcCChHHHHHHHHhc-hhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHH
Q 045393 224 HQRNPLHYAAASGNVKMAQRLLEES-KRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK 302 (580)
Q Consensus 224 ~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 302 (580)
.|.||||+|+..|+.+++++|++.+ +++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.
T Consensus 278 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~ 355 (373)
T 2fo1_E 278 KGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQA 355 (373)
T ss_dssp CCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHH
T ss_pred cCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHH
Confidence 8999999999999999999999987 555 88899999999999999999999999999999 89999999999999999
Q ss_pred cCCHHHHHHHhcCcc
Q 045393 303 HGNWNIVSFILRSPE 317 (580)
Q Consensus 303 ~~~~~iv~~Ll~~~~ 317 (580)
+|+.+++++|++++.
T Consensus 356 ~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 356 NNHHNIVDIFDRCRP 370 (373)
T ss_dssp TTCHHHHHHHHTTC-
T ss_pred cCCHHHHHHHHhcCc
Confidence 999999999999854
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=7.1e-40 Score=331.02 Aligned_cols=270 Identities=16% Similarity=0.132 Sum_probs=225.9
Q ss_pred hcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 045393 68 LLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147 (580)
Q Consensus 68 ~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 147 (580)
..+..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 78 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-------------IQNRFGCTALHLACKFGCVDTAKYLASVGEV 78 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-------------ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence 356778899999999999999999999999998875 5788999999999999999999999999995
Q ss_pred CCcccccCCCCHHHHHHHcCcHHHHHHHHhc----CCCCcCC-----------------CCCCCCccHHHHHHHcC--CH
Q 045393 148 PSSYINKAYQTPLSIAIDARLNDIACFIIDK----SPESLNT-----------------TRLPDELTLIHFVVMRQ--NY 204 (580)
Q Consensus 148 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----~~~~~~~-----------------~~~~~~~t~L~~A~~~~--~~ 204 (580)
.. +..|.||||+|+..|+.+++++|++. +.. ++. .+. .|.||||.|+..| +.
T Consensus 79 ~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~ 153 (364)
T 3ljn_A 79 HS---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYL 153 (364)
T ss_dssp CC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGH
T ss_pred cc---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchH
Confidence 43 46899999999999999999999998 432 211 333 7889999999999 89
Q ss_pred HHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchh-----cccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 045393 205 DIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKR-----LAYKRDCNGETPLHLAAENGKLKVLKLLI 279 (580)
Q Consensus 205 ~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 279 (580)
++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|++ + +..|..|.||||+|+..|+.+++++|+
T Consensus 154 ~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll 231 (364)
T 3ljn_A 154 EMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFV 231 (364)
T ss_dssp HHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999998765 888899999999999999999999999998887 4 677888999999999999999999999
Q ss_pred HhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhh---------cccccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393 280 NKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENL---------INLVDRNGNTPLHLAAMGLHSDVVFTLSR 350 (580)
Q Consensus 280 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~---------~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~ 350 (580)
++|++ ++.+|..|+||||+|+..|+.+++++|++++..... ....+..|.||++.|+..++.+.+..|+.
T Consensus 232 ~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~ 310 (364)
T 3ljn_A 232 EMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310 (364)
T ss_dssp TTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHH
T ss_pred HcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHH
Confidence 99998 888999999999999999999999999988544211 12256778899999999888888877776
Q ss_pred Ccccccccc
Q 045393 351 HKSVNIRAK 359 (580)
Q Consensus 351 ~~~~d~~~~ 359 (580)
+ ++|....
T Consensus 311 ~-~~~~~~~ 318 (364)
T 3ljn_A 311 E-KLDEVVR 318 (364)
T ss_dssp H-HHHHHHT
T ss_pred H-HHHHHhh
Confidence 5 4444333
No 14
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=7.6e-39 Score=311.42 Aligned_cols=266 Identities=17% Similarity=0.178 Sum_probs=190.6
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 045393 69 LRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148 (580)
Q Consensus 69 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~ 148 (580)
++.+|..|+||||+|++.|+.+++++|+++|++.+ .++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 71 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE----------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG----------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc----------cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 56789999999999999999999999999987732 23468899999999999999999999999999988
Q ss_pred CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChH
Q 045393 149 SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP 228 (580)
Q Consensus 149 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~ 228 (580)
+ ..+..|.||||+|+..|+.+++++|+++++........ ..+ ... .......+.++
T Consensus 72 ~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~----------------~~~---~~~~~~~~~~~ 127 (282)
T 1oy3_D 72 L-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD----TYL----------------TQS---QDCTPDTSHAP 127 (282)
T ss_dssp S-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------
T ss_pred C-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH----HHh----------------hcc---cccCcchhcch
Confidence 7 57889999999999999999999999988643221110 000 000 11123345667
Q ss_pred HHHHHHcCChHH-HHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccC-CCCCHHHHHHHcCCH
Q 045393 229 LHYAAASGNVKM-AQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNN-SDRSILHVAAKHGNW 306 (580)
Q Consensus 229 L~~A~~~g~~~~-v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~ 306 (580)
++.++..+.... ...+...+.++ +.++..|.||||+|+..|+.+++++|+++|++ ++.++. .|+||||+|+++|+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~ 205 (282)
T 1oy3_D 128 AAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAA 205 (282)
T ss_dssp ----------------CCCGGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCH
T ss_pred hhhccccccchhhhhhhhhhhhcC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCH
Confidence 777666554433 33344444554 67788999999999999999999999999999 677775 499999999999999
Q ss_pred HHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHh
Q 045393 307 NIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITR 376 (580)
Q Consensus 307 ~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~ 376 (580)
+++++|+++ +++++.+|..|+||||+|+..++.+++++|+++ |++++.+|. .|.||+++|....
T Consensus 206 ~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 206 SVLELLLKA---GADPTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGG--DKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHHHT---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCCCCCCC----------------
T ss_pred HHHHHHHHc---CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHc-CCCcCcCCC--cccccccccCCcc
Confidence 999999998 455899999999999999999999999999965 999999999 9999999998743
No 15
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=310.09 Aligned_cols=258 Identities=16% Similarity=0.130 Sum_probs=203.3
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHcCC----------CCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCC
Q 045393 119 DIEGNTPLHNAVTNQHKRVIRILVEKDS----------VPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRL 188 (580)
Q Consensus 119 d~~g~tpL~~A~~~~~~~~v~~Ll~~~~----------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 188 (580)
..+|.|+||+|+..|+.+.+..++..++ ......+..|.||||+|+..|+.+++++|++.+. +++..+.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW-AVNIITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC-CSCEECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCC
Confidence 4579999999999999777777665542 2234568899999999999999999999999984 4555565
Q ss_pred CCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHH
Q 045393 189 PDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAE 268 (580)
Q Consensus 189 ~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 268 (580)
.|.||||.|+..|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++. +. +..|.||||+|+.
T Consensus 91 -~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 91 -DHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDLASPIHEAAR 166 (285)
T ss_dssp -TCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTTSCHHHHHHH
T ss_pred -CCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHH
Confidence 899999999999999999999998765 8899999999999999999999999999999887 33 4569999999999
Q ss_pred cCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHh
Q 045393 269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348 (580)
Q Consensus 269 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~L 348 (580)
.|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++.+. +++ .|..|+||||+|+..++.+++++|
T Consensus 167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~-~~~~g~t~L~~A~~~~~~~~v~~L 241 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGA---DVN-QGKGQDSPLHAVVRTASEELACLL 241 (285)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC---CTT-CCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC---CCC-CCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999999999 89999999999999999999999999999954 477 489999999999999999999999
Q ss_pred hcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHh-hhhh
Q 045393 349 SRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTA-YAKR 398 (580)
Q Consensus 349 l~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~-ga~~ 398 (580)
+++ |+|++.+|. .|+|||++|.. +..++++|+++ |++.
T Consensus 242 l~~-gad~~~~d~--~g~t~l~~A~~---------~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 242 MDF-GADTQAKNA--EGKRPVELVPP---------ESPLAQLFLEREGASL 280 (285)
T ss_dssp HHT-TCCTTCCCT--TSCCGGGGSCT---------TSHHHHHHHHHC----
T ss_pred HHC-CCCCCCcCC--CCCCHHHHhcC---------ccHHHHHHHHhhccCC
Confidence 976 999999999 99999999974 24677888887 5543
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.4e-38 Score=304.14 Aligned_cols=229 Identities=20% Similarity=0.230 Sum_probs=181.6
Q ss_pred hccCCCCCcHHHHHHHcC-------------cHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Q 045393 116 RMTDIEGNTPLHNAVTNQ-------------HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPES 182 (580)
Q Consensus 116 ~~~d~~g~tpL~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~ 182 (580)
+.+|.+|.||||+|+..| +.+++++|++.|++.....+..|.||||+|+..|+.+++++|++++. +
T Consensus 4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~ 82 (253)
T 1yyh_A 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-D 82 (253)
T ss_dssp ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-C
T ss_pred CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-C
Confidence 468899999999999977 89999999999999887789999999999999999999999999984 4
Q ss_pred cCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcH
Q 045393 183 LNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETP 262 (580)
Q Consensus 183 ~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 262 (580)
++..+. .|.||||.|+..++.++++.|++.++..++..+..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||
T Consensus 83 ~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~ 160 (253)
T 1yyh_A 83 ANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSA 160 (253)
T ss_dssp TTCCCT-TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBH
T ss_pred CCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence 555555 89999999999999999999999998778999999999999999999999999999999987 7788999999
Q ss_pred HHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCCh
Q 045393 263 LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS 342 (580)
Q Consensus 263 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~ 342 (580)
||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++++ ++++.+|..|+||||+|+.+|+.
T Consensus 161 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~g~~ 236 (253)
T 1yyh_A 161 LHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIAQERMHH 236 (253)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC---CCccccccCCCCHHHHHHHcCCH
Confidence 9999999999999999999999 8999999999999999999999999999995 45899999999999999999999
Q ss_pred hHHHHhhcC
Q 045393 343 DVVFTLSRH 351 (580)
Q Consensus 343 ~~~~~Ll~~ 351 (580)
+++++|...
T Consensus 237 ~i~~~l~~~ 245 (253)
T 1yyh_A 237 DIVRLLDLE 245 (253)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999999865
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.3e-38 Score=302.67 Aligned_cols=231 Identities=23% Similarity=0.304 Sum_probs=182.6
Q ss_pred cccccCCCCcHHHHHHHhC-------------CHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcH
Q 045393 69 LRQKNLMDETALHIAARIG-------------DRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK 135 (580)
Q Consensus 69 ~~~~~~~g~tpLh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~ 135 (580)
++.+|..|.||||+|+..| +.+++++|++.|++++. ..|..|.||||+|+..|+.
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~------------~~d~~g~t~L~~A~~~g~~ 70 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN------------QTDRTGETALHLAARYSRS 70 (253)
T ss_dssp -------------------------------------------------------------CCCTTSCCHHHHHHHTTCH
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccc------------ccCCCCCcHHHHHHHcCCH
Confidence 6788999999999999987 89999999999988642 3688999999999999999
Q ss_pred HHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCC
Q 045393 136 RVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNK 215 (580)
Q Consensus 136 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~ 215 (580)
+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++++.+.+..+. .|.||||.|+..++.++++.|++.+.
T Consensus 71 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~ 148 (253)
T 1yyh_A 71 DAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHA 148 (253)
T ss_dssp HHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHHHHHTCSSHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHHHHcChHHHHHHHHHcCC
Confidence 99999999999887 57899999999999999999999999999767777766 89999999999999999999999877
Q ss_pred ccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCC
Q 045393 216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS 295 (580)
Q Consensus 216 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 295 (580)
+ ++..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus 149 ~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t 225 (253)
T 1yyh_A 149 D-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRL 225 (253)
T ss_dssp C-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred C-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccCCCC
Confidence 6 8899999999999999999999999999999988 77899999999999999999999999999999 8999999999
Q ss_pred HHHHHHHcCCHHHHHHHhcCc
Q 045393 296 ILHVAAKHGNWNIVSFILRSP 316 (580)
Q Consensus 296 ~Lh~A~~~~~~~iv~~Ll~~~ 316 (580)
|||+|+++|+.+++++|....
T Consensus 226 pl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 226 PRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHHHHHTTCHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 999999999999999999763
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.1e-39 Score=325.39 Aligned_cols=262 Identities=18% Similarity=0.151 Sum_probs=232.4
Q ss_pred cccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCC
Q 045393 28 STSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGP 107 (580)
Q Consensus 28 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~ 107 (580)
...|.+|.||||+|+..|+.++|++|++.|.+ ++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----- 79 (364)
T 3ljn_A 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVS---------PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH----- 79 (364)
T ss_dssp --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----
Confidence 34677899999999999999999999999988 8899999999999999999999999999999864
Q ss_pred cchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHc----CCCCCc----------------ccccCCCCHHHHHHHcC
Q 045393 108 APVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK----DSVPSS----------------YINKAYQTPLSIAIDAR 167 (580)
Q Consensus 108 ~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~----~~~~~~----------------~~~~~g~tpL~~A~~~~ 167 (580)
.+.+|.||||+|+..|+.+++++|++. +.++.. ..+..|.||||+|+..|
T Consensus 80 ----------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 149 (364)
T 3ljn_A 80 ----------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLG 149 (364)
T ss_dssp ----------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSC
T ss_pred ----------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcC
Confidence 345799999999999999999999998 665542 16778999999999999
Q ss_pred --cHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCcc----ccccCCCCChHHHHHHHcCChHHH
Q 045393 168 --LNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKEL----IDRLDWHQRNPLHYAAASGNVKMA 241 (580)
Q Consensus 168 --~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~----~~~~d~~g~t~L~~A~~~g~~~~v 241 (580)
+.+++++|++++. +++..+. .|.||||.|+..|+.++++.|++.+... ++..|..|.||||+|+..|+.+++
T Consensus 150 ~~~~~~v~~Ll~~ga-~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 227 (364)
T 3ljn_A 150 PEYLEMIKILVQLGA-SPTAKDK-ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227 (364)
T ss_dssp GGGHHHHHHHHHHTC-CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHH
T ss_pred CchHHHHHHHHHcCC-CCcccCC-CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHH
Confidence 9999999999984 5566665 8999999999999999999999987653 788899999999999999999999
Q ss_pred HHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc-----------cccccCCCCCHHHHHHHcCCHHHHH
Q 045393 242 QRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-----------IEIRNNSDRSILHVAAKHGNWNIVS 310 (580)
Q Consensus 242 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-----------~~~~d~~g~t~Lh~A~~~~~~~iv~ 310 (580)
++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++++. ....+..|++|++.|+..++.+.+.
T Consensus 228 ~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~ 306 (364)
T 3ljn_A 228 MRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306 (364)
T ss_dssp HHHHTTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHH
T ss_pred HHHHHcCCCC-CCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHH
Confidence 9999999998 788999999999999999999999999998662 1225678999999999999888888
Q ss_pred HHhcCc
Q 045393 311 FILRSP 316 (580)
Q Consensus 311 ~Ll~~~ 316 (580)
.|+..+
T Consensus 307 ~ll~~~ 312 (364)
T 3ljn_A 307 QLLQEK 312 (364)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777663
No 19
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.3e-38 Score=301.08 Aligned_cols=239 Identities=17% Similarity=0.209 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHH
Q 045393 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVM 200 (580)
Q Consensus 121 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~ 200 (580)
+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++ .+++..+. .|.||||.|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~-~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHG-AQVNGVTA-DWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCT-TSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCC-CCCCHHHHHHH
Confidence 58999999999999999999999999876 57889999999999999999999999998 45555565 89999999999
Q ss_pred cCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHH
Q 045393 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280 (580)
Q Consensus 201 ~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 280 (580)
.|+.++++.|++.+.. ++ .+.+|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++
T Consensus 79 ~~~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 79 SGSWDCVNLLLQHGAS-VQ-PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HTCHHHHHHHHHTTCC-SS-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999876 44 3556999999999999999999999999987 7789999999999999999999999999
Q ss_pred hCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcc-------
Q 045393 281 KYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS------- 353 (580)
Q Consensus 281 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~------- 353 (580)
+|++ ++. |..|+||||+|+..++.+++++|++. +++++.+|.+|+||||+|+..+ ++++.|++..+
T Consensus 156 ~g~~-~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~ 228 (261)
T 2xai_A 156 SGAD-VNQ-GKGQDSPLHAVARTASEELACLLMDF---GADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQL 228 (261)
T ss_dssp HTCC-TTC-CBTTBCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHH
T ss_pred cCCC-CCC-CCCCCChHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHH
Confidence 9999 664 88999999999999999999999999 4559999999999999999654 58888887644
Q ss_pred cccccccccCCCCCHHHHHHH
Q 045393 354 VNIRAKNHSARSNTALEIAEI 374 (580)
Q Consensus 354 ~d~~~~n~~~~g~t~l~~a~~ 374 (580)
++.+.+|. .|+||++.+.+
T Consensus 229 ~~~~~r~~--~g~t~l~~~~~ 247 (261)
T 2xai_A 229 CRLRIRKC--FGIQQHHKITK 247 (261)
T ss_dssp HHHHHHTT--SCTTCGGGGGG
T ss_pred HHHHHHHH--hchhccccCcc
Confidence 46778899 99999998876
No 20
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.9e-37 Score=301.44 Aligned_cols=269 Identities=20% Similarity=0.181 Sum_probs=195.8
Q ss_pred cccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCC
Q 045393 28 STSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGP 107 (580)
Q Consensus 28 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~ 107 (580)
...|.+|+||||+|+..|+.+++++|++.|++ ...++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---- 72 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL---- 72 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS----
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC------cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----
Confidence 45789999999999999999999999998876 12367889999999999999999999999999999876
Q ss_pred cchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCC
Q 045393 108 APVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTR 187 (580)
Q Consensus 108 ~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 187 (580)
.+|..|.||||+|+..|+.+++++|++++++....... +.+ ... .....
T Consensus 73 ---------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~~----------------~~~---~~~~~ 121 (282)
T 1oy3_D 73 ---------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD---TYL----------------TQS---QDCTP 121 (282)
T ss_dssp ---------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------
T ss_pred ---------CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH---HHh----------------hcc---cccCc
Confidence 47889999999999999999999999999865421110 000 000 00111
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHH
Q 045393 188 LPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA 267 (580)
Q Consensus 188 ~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~ 267 (580)
. .+.++++.+...+........+......++..+..|.||||+|+..|+.+++++|+++|+++....+..|.||||+|+
T Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~ 200 (282)
T 1oy3_D 122 D-TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200 (282)
T ss_dssp -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred c-hhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHH
Confidence 1 556677777766666555556655566688899999999999999999999999999999984443355999999999
Q ss_pred HcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCCh
Q 045393 268 ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHS 342 (580)
Q Consensus 268 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~ 342 (580)
..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++| ++++.+|.+|.|||++|....+.
T Consensus 201 ~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 201 EAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHG---APEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT---CCCCCCC----------------
T ss_pred HcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcC---CCcCcCCCcccccccccCCcccc
Confidence 99999999999999999 8999999999999999999999999999994 45999999999999999976543
No 21
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=8.8e-37 Score=288.83 Aligned_cols=226 Identities=21% Similarity=0.326 Sum_probs=189.1
Q ss_pred hccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHH
Q 045393 116 RMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLI 195 (580)
Q Consensus 116 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L 195 (580)
+.+|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++. +++..+. .|.|||
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~-~g~t~L 81 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGA-LVDPKDA-EGSTCL 81 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CCCCCCT-TSCCHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCC-CCCCCCC-CCCcHH
Confidence 4688999999999999999999999999999876 468889999999999999999999999874 3444444 788888
Q ss_pred HHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHH
Q 045393 196 HFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVL 275 (580)
Q Consensus 196 ~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 275 (580)
|.|+..|+.+++++|++.++..++..+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHH
Confidence 88888888888888888886667888888888888888888888888888888776 66777888888888888888888
Q ss_pred HHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393 276 KLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349 (580)
Q Consensus 276 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll 349 (580)
++|++++++ ++.+|..|+||||+|++.++.+++++|++++ ++++.+|.+|+||||+|+.+++.+.+..|+
T Consensus 161 ~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 161 EILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRD---SDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT---CCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC---CCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 888888888 7788888888888888888888888888874 447888888888888888888775554444
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.6e-37 Score=292.21 Aligned_cols=232 Identities=24% Similarity=0.288 Sum_probs=182.0
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHh----cCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 045393 69 LRQKNLMDETALHIAARIGDRAIVSEIMK----YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEK 144 (580)
Q Consensus 69 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 144 (580)
.+.+|.+|+||||+|++.|+.+++++|++ .+.+++ .+|..|.||||+|+..|+.+++++|+++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------cccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 45678889999999999999999998887 455543 4678899999999999999999999998
Q ss_pred CCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCC
Q 045393 145 DSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWH 224 (580)
Q Consensus 145 ~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~ 224 (580)
|++++ ..+..|.||||+|+..|+.+++++|++.++.. ...++..+..
T Consensus 69 g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~--------------------------------~~~~~~~~~~ 115 (241)
T 1k1a_A 69 GASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPG--------------------------------TLDLEARNYD 115 (241)
T ss_dssp TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTT--------------------------------SCCTTCCCTT
T ss_pred CCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--------------------------------cccccccCcC
Confidence 88776 45777888888888888888888888776421 0124556677
Q ss_pred CChHHHHHHHcCChHHHHHHHHhchhcccccC-CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHc
Q 045393 225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRD-CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH 303 (580)
Q Consensus 225 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 303 (580)
|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..
T Consensus 116 g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 193 (241)
T 1k1a_A 116 GLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR 193 (241)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 888888888888888888888888877 3444 7788888888888888888888888888 788888888888888888
Q ss_pred CCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393 304 GNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (580)
Q Consensus 304 ~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~ 351 (580)
|+.+++++|+++| ++++.+|..|+||||+|+..|+.++++.|++.
T Consensus 194 ~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 194 GLLPLVRTLVRSG---ADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp TCHHHHHHHHHTT---CCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred CCHHHHHHHHhcC---CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence 8888888888874 44888888888888888888888888888754
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.4e-36 Score=287.54 Aligned_cols=228 Identities=19% Similarity=0.296 Sum_probs=211.7
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 045393 69 LRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148 (580)
Q Consensus 69 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~ 148 (580)
++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 70 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-------------TCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-------------ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 66789999999999999999999999999998865 46889999999999999999999999999987
Q ss_pred CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChH
Q 045393 149 SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP 228 (580)
Q Consensus 149 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~ 228 (580)
+ ..+..|.||||+|+..|+.+++++|++.++.+.+..+. .|.||||.|+..++.++++.|++.+.+ ++..+..|.||
T Consensus 71 ~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~ 147 (237)
T 3b7b_A 71 D-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENIC 147 (237)
T ss_dssp C-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred C-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCH
Confidence 6 57889999999999999999999999999767776666 899999999999999999999998876 88899999999
Q ss_pred HHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHH
Q 045393 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNI 308 (580)
Q Consensus 229 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~i 308 (580)
||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+.
T Consensus 148 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~~~~~ 225 (237)
T 3b7b_A 148 LHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWS 225 (237)
T ss_dssp HHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999988 77789999999999999999999999999999 89999999999999999999876
Q ss_pred HHHHhc
Q 045393 309 VSFILR 314 (580)
Q Consensus 309 v~~Ll~ 314 (580)
+..+++
T Consensus 226 ~~~l~~ 231 (237)
T 3b7b_A 226 ALQMSK 231 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.3e-37 Score=289.75 Aligned_cols=214 Identities=26% Similarity=0.330 Sum_probs=176.4
Q ss_pred hccCCCCCcHHHHHHHcCcHHHHHHHHH----cCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393 116 RMTDIEGNTPLHNAVTNQHKRVIRILVE----KDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE 191 (580)
Q Consensus 116 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 191 (580)
+.+|.+|.||||+|++.|+.+++++|++ .+.+++ ..+..|.||||+|+..|+.+++++|++++
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------------ 69 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAG------------ 69 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTT------------
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcC------------
Confidence 3567888888888888888888888876 454443 34555666666666666666666666554
Q ss_pred ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhch----hcccccCCCCCcHHHHHH
Q 045393 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK----RLAYKRDCNGETPLHLAA 267 (580)
Q Consensus 192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~g~tpL~~A~ 267 (580)
.. ++..+..|.||||+|+..|+.+++++|++.++ +. +..+..|.||||+|+
T Consensus 70 -----------------------~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~ 124 (241)
T 1k1a_A 70 -----------------------AS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAV 124 (241)
T ss_dssp -----------------------CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHH
T ss_pred -----------------------CC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHH
Confidence 22 45567778899999999999999999999886 44 667889999999999
Q ss_pred HcCcHHHHHHHHHhCCCcccccc-CCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHH
Q 045393 268 ENGKLKVLKLLINKYPDAIEIRN-NSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346 (580)
Q Consensus 268 ~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~ 346 (580)
..|+.+++++|++++++ ++.++ ..|+||||+|+.+|+.+++++|++++ .+++.+|..|+||||+|+..|+.++++
T Consensus 125 ~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 125 NTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG---ANVNAQMYSGSSALHSASGRGLLPLVR 200 (241)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999 77777 88999999999999999999999994 559999999999999999999999999
Q ss_pred HhhcCcccccccccccCCCCCHHHHHHH
Q 045393 347 TLSRHKSVNIRAKNHSARSNTALEIAEI 374 (580)
Q Consensus 347 ~Ll~~~~~d~~~~n~~~~g~t~l~~a~~ 374 (580)
+|+++ |+|++.+|. .|+||+++|..
T Consensus 201 ~Ll~~-ga~~~~~~~--~g~tpl~~A~~ 225 (241)
T 1k1a_A 201 TLVRS-GADSSLKNC--HNDTPLMVARS 225 (241)
T ss_dssp HHHHT-TCCTTCCCT--TSCCTTTTCSS
T ss_pred HHHhc-CCCCCCcCC--CCCCHHHHHHh
Confidence 99975 999999999 99999999876
No 25
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.3e-37 Score=301.17 Aligned_cols=274 Identities=20% Similarity=0.234 Sum_probs=206.8
Q ss_pred HHHHcCCHHHHHHHhhhcCc---------ccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCC
Q 045393 7 EVLRHGDEYKIKQLALRQDI---------FSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDE 77 (580)
Q Consensus 7 ~A~~~g~~~~~~~ll~~~~~---------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~ 77 (580)
.+++.+..+.++.++..... ....+.+|.||||.||..|+.+++++|+++|++ ++..|..|.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~ 74 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD---------INYANVDGL 74 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC---------TTCBCTTCC
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC---------CcccCCCCC
Confidence 46778888888888876422 112334678999999999999999999999988 888899999
Q ss_pred cHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCC
Q 045393 78 TALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157 (580)
Q Consensus 78 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 157 (580)
||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+++. ..+..|.
T Consensus 75 t~L~~A~~~g~~~~v~~Ll~~ga~~~-------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~ 140 (299)
T 1s70_B 75 TALHQACIDDNVDMVKFLVENGANIN-------------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGD 140 (299)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCC-------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCC
Confidence 99999999999999999999998865 478889999999999999999999999998876 4688889
Q ss_pred CHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC
Q 045393 158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237 (580)
Q Consensus 158 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~ 237 (580)
||||+|+..++.++++.++.....+.+... ..+.++++
T Consensus 141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~-----------------------------------~~~~~~~~------- 178 (299)
T 1s70_B 141 TPLDIAEEEAMEELLQNEVNRQGVDIEAAR-----------------------------------KEEERIML------- 178 (299)
T ss_dssp CHHHHCCSHHHHHHHHHHHHHHTCCHHHHH-----------------------------------HHHHHHHH-------
T ss_pred CHHHHHHhcchHHHHHHHHhhcCCCchhhh-----------------------------------hhhhhHHH-------
Confidence 999999888888888888776432211100 00111111
Q ss_pred hHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcc
Q 045393 238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317 (580)
Q Consensus 238 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 317 (580)
..++.++..+.......+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus 179 -~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g- 255 (299)
T 1s70_B 179 -RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENL- 255 (299)
T ss_dssp -HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred -HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-
Confidence 2234455555544455666788888888888888888888888877 7778888888888888888888888888874
Q ss_pred hhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (580)
Q Consensus 318 ~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~ 351 (580)
++++.+|..|+||||+|+.. ..+.++.+++.
T Consensus 256 --ad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 256 --CDMEAVNKVGQTAFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp --CCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred --CCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 44788888888888888653 34555555543
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=6.6e-36 Score=281.63 Aligned_cols=224 Identities=25% Similarity=0.301 Sum_probs=174.6
Q ss_pred CCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchh
Q 045393 32 PGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVL 111 (580)
Q Consensus 32 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 111 (580)
..+++|||.|+..|+.+.+++|++.++. ..+.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~--------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------- 67 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKS--------LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-------- 67 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGG--------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--------
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchh--------hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC--------
Confidence 4578899999999999999999988876 577788889999999999999999999999888765
Q ss_pred hhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE 191 (580)
Q Consensus 112 ~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 191 (580)
.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|++++.
T Consensus 68 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----------- 130 (231)
T 3aji_A 68 -----DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGA----------- 130 (231)
T ss_dssp -----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----------
T ss_pred -----CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence 467889999999999999999999999888775 456677777777777777777777776653
Q ss_pred ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc
Q 045393 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK 271 (580)
Q Consensus 192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 271 (580)
. ++..+..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+
T Consensus 131 ------------------------~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~ 184 (231)
T 3aji_A 131 ------------------------N-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEER 184 (231)
T ss_dssp ------------------------C-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTC
T ss_pred ------------------------C-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCC
Confidence 1 3444556677777777777777777777777666 5567777777777777777
Q ss_pred HHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcC
Q 045393 272 LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRS 315 (580)
Q Consensus 272 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 315 (580)
.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.++
T Consensus 185 ~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 185 VEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp HHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 7777777777777 677777777777777777777777777765
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.6e-36 Score=280.84 Aligned_cols=228 Identities=23% Similarity=0.283 Sum_probs=165.3
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHH
Q 045393 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFV 198 (580)
Q Consensus 119 d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A 198 (580)
+..+.||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|++
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--------------------- 61 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--------------------- 61 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH---------------------
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHH---------------------
Confidence 34455666666666666666666665544433444445555555555555555555544
Q ss_pred HHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHH
Q 045393 199 VMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278 (580)
Q Consensus 199 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 278 (580)
.+.. ++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|
T Consensus 62 --------------~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L 125 (231)
T 3aji_A 62 --------------LGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVML 125 (231)
T ss_dssp --------------TTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred --------------hCCC-CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 4333 5556677788888888888888888888887776 56677888888888888888888888
Q ss_pred HHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCccccccc
Q 045393 279 INKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA 358 (580)
Q Consensus 279 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~ 358 (580)
++++++ ++.+|..|+||||+|+..|+.+++++|+++ +.+++.+|..|+||||+|+..++.+++++|+++ |+|++.
T Consensus 126 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~ 200 (231)
T 3aji_A 126 LEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYI 200 (231)
T ss_dssp HHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCC
T ss_pred HHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCC
Confidence 888887 777888888888888888888888888887 344788888888888888888888888888865 788888
Q ss_pred ccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhh
Q 045393 359 KNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAK 397 (580)
Q Consensus 359 ~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~ 397 (580)
+|. .|+||+++|.. ....++.++|.++|++
T Consensus 201 ~~~--~g~t~l~~A~~-------~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 201 ENK--EEKTPLQVAKG-------GLGLILKRLAEGEEAS 230 (231)
T ss_dssp CCT--TSCCHHHHSCH-------HHHHHHHHHHHHHHHC
T ss_pred CCC--CCCCHHHHHHh-------hHHHHHHHHHcccccc
Confidence 888 88888888866 4566777888777764
No 28
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-37 Score=301.91 Aligned_cols=271 Identities=18% Similarity=0.219 Sum_probs=208.3
Q ss_pred HHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccC
Q 045393 40 MAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTD 119 (580)
Q Consensus 40 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d 119 (580)
.++..++.+.++.++..................+..|.||||.|+..|+.+++++|+++|++++ ..|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~ 70 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-------------YAN 70 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-------------CBC
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-------------ccC
Confidence 5677888888888888776522221122223345567899999999999999999999998865 478
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHH
Q 045393 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVV 199 (580)
Q Consensus 120 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~ 199 (580)
..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++..
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~------------------ 131 (299)
T 1s70_B 71 VDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAH------------------ 131 (299)
T ss_dssp TTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC------------------
Confidence 899999999999999999999999998876 4677788888888888888888888776632
Q ss_pred HcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 045393 200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279 (580)
Q Consensus 200 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 279 (580)
++..+..|.||||+|+..++.++++.++.......+..+..+.++++ ..++.++
T Consensus 132 ------------------~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l 185 (299)
T 1s70_B 132 ------------------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWL 185 (299)
T ss_dssp ------------------TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHH
T ss_pred ------------------CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHH
Confidence 33345556666666666666666666665432221221212222222 3455667
Q ss_pred HhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccc
Q 045393 280 NKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK 359 (580)
Q Consensus 280 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~ 359 (580)
..+.......+..|.||||+|+.+|+.+++++|++.+ .++|.+|..|+||||+|+..|+.+++++|+++ |+|++.+
T Consensus 186 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~ 261 (299)
T 1s70_B 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR---YDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAV 261 (299)
T ss_dssp HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred hccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC---CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCc
Confidence 7776656777889999999999999999999999984 55999999999999999999999999999976 9999999
Q ss_pred cccCCCCCHHHHHHH
Q 045393 360 NHSARSNTALEIAEI 374 (580)
Q Consensus 360 n~~~~g~t~l~~a~~ 374 (580)
|. .|+||+++|.+
T Consensus 262 d~--~g~t~l~~A~~ 274 (299)
T 1s70_B 262 NK--VGQTAFDVADE 274 (299)
T ss_dssp CT--TSCCTTTSCCS
T ss_pred CC--CCCCHHHHHHH
Confidence 99 99999999965
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=292.79 Aligned_cols=224 Identities=17% Similarity=0.253 Sum_probs=129.0
Q ss_pred ccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcH-HHHHHHHHcCCCC
Q 045393 70 RQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK-RVIRILVEKDSVP 148 (580)
Q Consensus 70 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~~~~~ 148 (580)
..+|..+.+||+.|++.|+.++|++|++.+++..... ...++..+..|.||||.|+..++. +++++|++.|+++
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~-----~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv 79 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA-----EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV 79 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------CCCCT
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccc-----cccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC
Confidence 4467778899999999999999999999987643211 223456788899999999987775 5889999999988
Q ss_pred CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChH
Q 045393 149 SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP 228 (580)
Q Consensus 149 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~ 228 (580)
+ ..|.+|.||||+|+..|+.+++++|++.+.+ +...+. .|.||+|.|+..++.++++.|++.+.+ ++.+|..|+||
T Consensus 80 n-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~Tp 155 (269)
T 4b93_B 80 N-VTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNA-DQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTP 155 (269)
T ss_dssp T-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCH
T ss_pred C-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCC-CCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence 7 5788899999999999999999999888743 333333 566666666666666666666665544 55566666666
Q ss_pred HHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcC
Q 045393 229 LHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304 (580)
Q Consensus 229 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 304 (580)
||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++++
T Consensus 156 L~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 156 LIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp HHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTC
T ss_pred HHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCC
Confidence 66666666666666666666555 45555666666666666666666666666665 5666666666666665544
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.9e-35 Score=277.82 Aligned_cols=212 Identities=20% Similarity=0.268 Sum_probs=140.2
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCC-CcCC-CCCCCCccHHHHHH
Q 045393 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPE-SLNT-TRLPDELTLIHFVV 199 (580)
Q Consensus 122 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~-~~~~-~~~~~~~t~L~~A~ 199 (580)
|+||||+|++.|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.++. +... .+. .|.||||.|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-SGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT-TSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC-CCCCHHHHHH
Confidence 678999999999999999999988877766788888888888888888888888888732 1222 223 5666666666
Q ss_pred HcCCHHHHHHHHhhC-CccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHH
Q 045393 200 MRQNYDIMVKILGTN-KELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLL 278 (580)
Q Consensus 200 ~~~~~~~~~~Ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 278 (580)
..|+.++++.|++.+ ...++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 666666666666654 1235555666666666666666666666666666555 45555666666666666666666666
Q ss_pred HHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHh-cCcchhhhcccccCCCCcHHHHHHh
Q 045393 279 INKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL-RSPEMENLINLVDRNGNTPLHLAAM 338 (580)
Q Consensus 279 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll-~~~~~~~~~n~~d~~G~T~Lh~A~~ 338 (580)
+++++..++.+|..|+||||+|+..|+.+++++|+ +. +++++.+|.+|.||||+|+.
T Consensus 160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGGGGCSS
T ss_pred HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHHHHHHH
Confidence 66662225666666666666666666666666666 44 33356666666666666643
No 31
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.3e-35 Score=278.89 Aligned_cols=211 Identities=23% Similarity=0.260 Sum_probs=193.8
Q ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhC--Cccccc-cCCCCChHHHHH
Q 045393 156 YQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTN--KELIDR-LDWHQRNPLHYA 232 (580)
Q Consensus 156 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~--~~~~~~-~d~~g~t~L~~A 232 (580)
|.||||.|+..|+.+++++|++.++......+. .|.||||.|+..|+.++++.|++.+ .. ++. .+..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCC-CCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCCCCCCHHHHH
Confidence 689999999999999999999999766555565 8999999999999999999999998 44 444 889999999999
Q ss_pred HHcCChHHHHHHHHhc--hhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHH
Q 045393 233 AASGNVKMAQRLLEES--KRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVS 310 (580)
Q Consensus 233 ~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~ 310 (580)
+..|+.+++++|+++| ++. +..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999998 665 67788999999999999999999999999999 8999999999999999999999999
Q ss_pred HHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393 311 FILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI 374 (580)
Q Consensus 311 ~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~ 374 (580)
+|++.+. .++|.+|..|+||||+|+..|+.+++++|+++.|+|++.+|. .|+||+++|..
T Consensus 158 ~Ll~~g~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~--~g~t~l~~A~~ 217 (228)
T 2dzn_A 158 LLCGLGK--SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN--KGAKAEDVALN 217 (228)
T ss_dssp HHHTTTC--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT--TSCBGGGGCSS
T ss_pred HHHhcCc--ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC--CCCcHHHHHHH
Confidence 9999851 458999999999999999999999999999667999999999 99999999964
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=274.17 Aligned_cols=228 Identities=18% Similarity=0.206 Sum_probs=145.1
Q ss_pred ccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 045393 70 RQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149 (580)
Q Consensus 70 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~ 149 (580)
+..|..|.||||.|+..|+.+++++|++.|.+++ .+|..|.||||+|+..|+.+++++|++.+++..
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~ 69 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-------------QPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcC-------------CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch
Confidence 4567788888888888888888888888887755 367788888888888888888888888888777
Q ss_pred cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHH
Q 045393 150 SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPL 229 (580)
Q Consensus 150 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L 229 (580)
...+..|.||||.|+..|+.+++++|++.+. +++..+. .|.+|||.|+..++.++++.|++.+.. ++..+..|.|||
T Consensus 70 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l 146 (240)
T 3eu9_A 70 QLGGDLNSTPLHWATRQGHLSMVVQLMKYGA-DPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPL 146 (240)
T ss_dssp CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred hhcCCcCCChhHHHHHcCCHHHHHHHHHcCC-CCcccCC-CCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHH
Confidence 6666667788888888888888887777763 2233333 455555555555555555555555443 445555555555
Q ss_pred HHHHHcCC-hHHHHHHHHhchhcccccCC-CCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHH
Q 045393 230 HYAAASGN-VKMAQRLLEESKRLAYKRDC-NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWN 307 (580)
Q Consensus 230 ~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 307 (580)
|.|+..++ .+++++|++.+++. +..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.|+.+
T Consensus 147 ~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~ 224 (240)
T 3eu9_A 147 MWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVW 224 (240)
T ss_dssp HHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHH
T ss_pred HHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHH
Confidence 55554433 45555555555544 22222 455555555555555555555555555 4555555555555555555555
Q ss_pred HHHHHhcC
Q 045393 308 IVSFILRS 315 (580)
Q Consensus 308 iv~~Ll~~ 315 (580)
++++|++.
T Consensus 225 ~v~~L~~~ 232 (240)
T 3eu9_A 225 MINHLQEA 232 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.2e-35 Score=286.95 Aligned_cols=236 Identities=19% Similarity=0.190 Sum_probs=152.2
Q ss_pred HHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCC
Q 045393 9 LRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGD 88 (580)
Q Consensus 9 ~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~ 88 (580)
++..+.+.++.++..++ .+..|..|.||||+|+..|+.+++++|++.|++ ++.+ +|+||||+|+..|+
T Consensus 7 i~~~~~~~v~~lL~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~--~g~t~L~~A~~~g~ 74 (285)
T 3kea_A 7 INTWKSKQLKSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL---------KNLL--ENEFPLHQAATLED 74 (285)
T ss_dssp GGGCCHHHHHHHHHSTT-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG---------GSCC--TTCCHHHHHTTSSS
T ss_pred HHhcCHHHHHHHHHhCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---------CCCC--CCCCHHHHHHHcCC
Confidence 34555555555555443 334666777777777777777777777777666 4444 36777777777777
Q ss_pred HHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCC-CCHHHHHHHcC
Q 045393 89 RAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY-QTPLSIAIDAR 167 (580)
Q Consensus 89 ~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~ 167 (580)
.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++ ..+..| .||||+|+..|
T Consensus 75 ~~~v~~Ll~~ga~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~ 140 (285)
T 3kea_A 75 TKIVKILLFSGLDDS-------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLN 140 (285)
T ss_dssp CHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCC-------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcC
Confidence 777777777766654 356667777777777777777777777766655 344444 56666666666
Q ss_pred cHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHh
Q 045393 168 LNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE 247 (580)
Q Consensus 168 ~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 247 (580)
+.+++++|+++++.. .+ ...|.||||+|+..|+.+++++|+++
T Consensus 141 ~~~~v~~Ll~~g~~~-----------------------------------~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 141 DVSIVSYFLSEIPST-----------------------------------FD--LAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp CHHHHHHHHTTSCTT-----------------------------------CC--CSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCcc-----------------------------------cc--ccCCccHHHHHHHcChHHHHHHHHHc
Confidence 666666666655321 11 11566777777777777777777777
Q ss_pred chhcccccCCCCCcH-HHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCc
Q 045393 248 SKRLAYKRDCNGETP-LHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSP 316 (580)
Q Consensus 248 ~~~~~~~~~~~g~tp-L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 316 (580)
|+++ +.++..|.|| ||+|+..|+.+++++|+++|++ ++.+| +.|+..|+.+++++|+++|
T Consensus 184 gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 184 MTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp HHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHH
T ss_pred CCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcC
Confidence 7666 5566677776 7777777777777777777776 55555 2445677777777777763
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=274.07 Aligned_cols=227 Identities=19% Similarity=0.178 Sum_probs=207.8
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHH
Q 045393 117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIH 196 (580)
Q Consensus 117 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~ 196 (580)
..|..|.|||+.|++.|+.+++++|++.|.+++ ..+..|.||||.|+..|+.+++++|++++.......+. .|.||||
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~t~L~ 81 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD-LNSTPLH 81 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT-TTBCHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC-cCCChhH
Confidence 467889999999999999999999999998876 57889999999999999999999999999755544444 6999999
Q ss_pred HHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc-HHHH
Q 045393 197 FVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK-LKVL 275 (580)
Q Consensus 197 ~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v 275 (580)
.|+..++.++++.|++.+.. ++..+..|.||||.|+..|+.+++++|+++|+++ +.++..|.||||+|+..++ .+++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~ 159 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPT 159 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred HHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHH
Confidence 99999999999999998766 7888999999999999999999999999999887 6788999999999997666 8999
Q ss_pred HHHHHhCCCccccccC-CCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393 276 KLLINKYPDAIEIRNN-SDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (580)
Q Consensus 276 ~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~ 351 (580)
++|++.+++ ++..+. .|+||||+|+.+|+.+++++|++++ .+++.+|..|.||||+|+..|+.+++++|++.
T Consensus 160 ~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 160 RLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAG---ANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT---CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 999999999 777776 9999999999999999999999984 55899999999999999999999999999975
No 35
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-36 Score=286.06 Aligned_cols=220 Identities=23% Similarity=0.296 Sum_probs=111.8
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHH
Q 045393 117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIH 196 (580)
Q Consensus 117 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~ 196 (580)
.+|..+.+||+.|+..|+.++|++|++.+++...... ...+..+. .+.+||+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~---------------------------~~~~~~~~-~~~t~L~ 57 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE---------------------------DTVSAADP-EFCHPLC 57 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc---------------------------ccccccCc-cCCCHHH
Confidence 3677888999999999999999999998875431100 00011111 3445555
Q ss_pred HHHHcCCHH-HHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHH
Q 045393 197 FVVMRQNYD-IMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVL 275 (580)
Q Consensus 197 ~A~~~~~~~-~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 275 (580)
.|+..++.+ +++.|++.+.+ ++..|.+|+||||+|+..|+.+++++|++.++++ +.++..|.||+|.|+..++.+++
T Consensus 58 ~a~~~~~~~~~v~~Ll~~Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~ 135 (269)
T 4b93_B 58 QCPKCAPAQKRLAKVPASGLG-VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVV 135 (269)
T ss_dssp -----------------CCCC-TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHH
Confidence 554444332 33444444333 5555555555555555555555555555555554 44455555555555555555555
Q ss_pred HHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc
Q 045393 276 KLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355 (580)
Q Consensus 276 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d 355 (580)
++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++.| +++|.+|..|+||||+|+..|+.+++++|+++ |+|
T Consensus 136 ~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g---advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad 210 (269)
T 4b93_B 136 KCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHG---ASINASNNKGNTALHEAVIEKHVFVVELLLLH-GAS 210 (269)
T ss_dssp HHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTT---CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred HHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCC
Confidence 555555555 5555555555555555555555555555552 33555555555555555555555555555543 555
Q ss_pred cccccccCCCCCHHHHHH
Q 045393 356 IRAKNHSARSNTALEIAE 373 (580)
Q Consensus 356 ~~~~n~~~~g~t~l~~a~ 373 (580)
+|.+|. .|+|||++|.
T Consensus 211 ~~~~d~--~G~TpL~~A~ 226 (269)
T 4b93_B 211 VQVLNK--RQRTAVDCAE 226 (269)
T ss_dssp SCCCCT--TSCCSGGGSC
T ss_pred CCCcCC--CCCCHHHHHH
Confidence 555555 5555555554
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.6e-34 Score=280.89 Aligned_cols=236 Identities=14% Similarity=0.132 Sum_probs=189.2
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 045393 69 LRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148 (580)
Q Consensus 69 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~ 148 (580)
++.+|..|.||||+|+..|+.+++++|+++|++++. . +|.||||+|+..|+.+++++|+++|+++
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 88 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-------------L--ENEFPLHQAATLEDTKIVKILLFSGLDD 88 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-------------C--TTCCHHHHHTTSSSCHHHHHHHHTTCCT
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-------------C--CCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 567788888888888888888888888888877652 2 4788888888888888888888888876
Q ss_pred CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCC-Ch
Q 045393 149 SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQ-RN 227 (580)
Q Consensus 149 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g-~t 227 (580)
+ ..+..|.||||+|+..|+.+++++|++++ .+ ++..+..| .|
T Consensus 89 ~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----------------------------------a~-~~~~~~~g~~t 131 (285)
T 3kea_A 89 S-QFDDKGNTALYYAVDSGNMQTVKLFVKKN-----------------------------------WR-LMFYGKTGWKT 131 (285)
T ss_dssp T-CCCTTSCCHHHHHHHTTCHHHHHHHHHHC-----------------------------------GG-GGGCSSSGGGS
T ss_pred C-CcCCCCCcHHHHHHHcCCHHHHHHHHhcC-----------------------------------CC-CCccCCCCCCC
Confidence 5 35556666666666666666666555554 32 56677778 79
Q ss_pred HHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCH-HHHHHHcCCH
Q 045393 228 PLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI-LHVAAKHGNW 306 (580)
Q Consensus 228 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~ 306 (580)
|||+|+..|+.+++++|+++|++... ...|.||||+|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+.+|+.
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~ 208 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDI 208 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCH
Confidence 99999999999999999999977622 22899999999999999999999999999 89999999998 9999999999
Q ss_pred HHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHH
Q 045393 307 NIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEI 374 (580)
Q Consensus 307 ~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~ 374 (580)
+++++|+++|. +++.+| +.|+..|+.+++++|+++ |++++.... ...+++...
T Consensus 209 ~~v~~Ll~~ga---d~~~~~-------~~a~~~~~~~iv~~Ll~~-g~~~~~~~~----~~~~~~~~~ 261 (285)
T 3kea_A 209 EMLQALFKYDI---NIYSAN-------LENVLLDDAEIAKMIIEK-HVEYKSDSY----TKDLDIVKN 261 (285)
T ss_dssp HHHHHHTTSCB---CSTTTT-------GGGGTTTCHHHHHHHHHH-HHHHTTCTT----TTTCHHHHT
T ss_pred HHHHHHHHcCC---CCCCCC-------hhhhhcCCHHHHHHHHHc-CCCCCCccc----cchHHHHhh
Confidence 99999999954 478777 356789999999999975 888776544 345566654
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.8e-34 Score=270.16 Aligned_cols=215 Identities=19% Similarity=0.222 Sum_probs=191.8
Q ss_pred CcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHh
Q 045393 133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILG 212 (580)
Q Consensus 133 ~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~ 212 (580)
|+.+++++|+++|++.....+..|.||||+|+..|+.+++++|++++. +++..+. .|.||||.|+..++.++++.|++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-DANIQDN-MGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCC-CCCCcCC-CCCCHHHHHHHcCCHHHHHHHHH
Confidence 677888999999998887778899999999999999999999999874 4455555 88999999999999999999999
Q ss_pred hCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC
Q 045393 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS 292 (580)
Q Consensus 213 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~ 292 (580)
.++..++..+..|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..|+.+++++|++++++ ++.+|..
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 157 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR 157 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 988778889999999999999999999999999999887 67788999999999999999999999999998 8999999
Q ss_pred CCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc
Q 045393 293 DRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355 (580)
Q Consensus 293 g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d 355 (580)
|+||||+|+++|+.+++++|++++ ++++.+|..|.||||+|+..++.+++++|+++ |+.
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~ 216 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLV 216 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCS
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcC---CCCccccccCCCHHHHHHHhcchHHHHHHHHc-CCC
Confidence 999999999999999999999994 45899999999999999999999999999976 443
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.6e-34 Score=268.18 Aligned_cols=215 Identities=22% Similarity=0.310 Sum_probs=197.1
Q ss_pred CCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHc
Q 045393 87 GDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA 166 (580)
Q Consensus 87 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 166 (580)
|+.+++++|+++|++++. ..|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..
T Consensus 2 g~~~~i~~Ll~~g~~~~~------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 68 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHN------------QTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSA 68 (223)
T ss_dssp ---CCEETTEETTCCTTC------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred CcHHHHHHHHHcCCCccc------------ccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHc
Confidence 678899999999988653 358899999999999999999999999999887 5789999999999999
Q ss_pred CcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHH
Q 045393 167 RLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246 (580)
Q Consensus 167 ~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 246 (580)
|+.+++++|+++++...+..+. .|.||||.|+..++.++++.|++.+.. ++..|..|.||||+|+..|+.+++++|++
T Consensus 69 ~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 146 (223)
T 2f8y_A 69 DAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK 146 (223)
T ss_dssp TCHHHHHHHHHBTTSCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCcccCCC-CCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999767776666 899999999999999999999998766 88899999999999999999999999999
Q ss_pred hchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcch
Q 045393 247 ESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318 (580)
Q Consensus 247 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 318 (580)
+|+++ +.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++++.+++++|++++..
T Consensus 147 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 147 NGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp TTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred cCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 99887 77899999999999999999999999999999 899999999999999999999999999998653
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=5.2e-36 Score=297.23 Aligned_cols=292 Identities=11% Similarity=0.023 Sum_probs=168.6
Q ss_pred CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhh
Q 045393 33 GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE 112 (580)
Q Consensus 33 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 112 (580)
.+.+|+| ....++|++|+++|++ ++..+..|.|+++ |+.++++.|+++|.+++.........
T Consensus 22 ~~~~~~~----~~~~dlv~~ll~~ga~---------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~ 83 (327)
T 1sw6_A 22 RTAGPII----TFTHDLTSDFLSSPLK---------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLN 83 (327)
T ss_dssp ---CCEE----ECCTTCCCSTTTSSCC---------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------
T ss_pred ccccchh----hhcCchHHHHhhCCcc---------cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhh
Confidence 3455565 4666889999999998 8999999999988 99999999999997754210000000
Q ss_pred h-hh---hccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCC
Q 045393 113 S-LF---RMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRL 188 (580)
Q Consensus 113 ~-~l---~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 188 (580)
. .. ........+.+|.|+..+..+++++|++.|.+++...+..|.||||+|+..|+.+++++|++++. +++..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga-d~n~~d~ 162 (327)
T 1sw6_A 84 NDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS-NRLYGDN 162 (327)
T ss_dssp --------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTBCCT
T ss_pred cccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCcCC
Confidence 0 00 00111122335777777777778888877777764467777777777777777777777777773 3444444
Q ss_pred CCCccHHHHHHHcCC---HHHHHHHHhhCCccccccCCCCChHHHHHHH----cCChHHHHHHHHhchhcccccCCCCCc
Q 045393 189 PDELTLIHFVVMRQN---YDIMVKILGTNKELIDRLDWHQRNPLHYAAA----SGNVKMAQRLLEESKRLAYKRDCNGET 261 (580)
Q Consensus 189 ~~~~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~~~~~~~~~~~~g~t 261 (580)
.|.||||.|+..|+ .+.++.|++.....++.+|..|+||||+|+. .|+.+++++|++.+........ +
T Consensus 163 -~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~--~-- 237 (327)
T 1sw6_A 163 -MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ--N-- 237 (327)
T ss_dssp -TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG--G--
T ss_pred -CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc--c--
Confidence 66677777776666 4555555555544466666666666666666 6666666666665432210000 0
Q ss_pred HHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCC
Q 045393 262 PLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLH 341 (580)
Q Consensus 262 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~ 341 (580)
..+...+.+.+++ ++.+|..|+||||.|+. +++|++. ++|.+|.+|+||||+|+..|+
T Consensus 238 ----------~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~ 295 (327)
T 1sw6_A 238 ----------RPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGN 295 (327)
T ss_dssp ----------CCEEEC-----------------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCC
T ss_pred ----------hHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCC
Confidence 0000001122555 56667777777777664 6666654 266677777777777777777
Q ss_pred hhHHHHhhcCcccccccccccCCCCCHHHHHH
Q 045393 342 SDVVFTLSRHKSVNIRAKNHSARSNTALEIAE 373 (580)
Q Consensus 342 ~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~ 373 (580)
.+++++|+++ |+|++.+|. .|+|||++|.
T Consensus 296 ~~~v~~Ll~~-Gad~~~~d~--~G~TpL~~A~ 324 (327)
T 1sw6_A 296 ISIVDALLDY-GADPFIANK--SGLRPVDFGA 324 (327)
T ss_dssp HHHHHHHHHT-TCCTTCCCT--TSCCGGGGTC
T ss_pred HHHHHHHHHc-CCCCcccCC--CCCCHHHHHH
Confidence 7777777754 677777777 7777777664
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-35 Score=292.36 Aligned_cols=284 Identities=14% Similarity=0.114 Sum_probs=202.6
Q ss_pred HcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhc--------ccccCCCCcHHH
Q 045393 10 RHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLL--------RQKNLMDETALH 81 (580)
Q Consensus 10 ~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--------~~~~~~g~tpLh 81 (580)
.....+++++|+++|...+..+..|.|+++ |+.++|+.|+++|.++....-.... ..+.....+.+|
T Consensus 28 ~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 102 (327)
T 1sw6_A 28 ITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 102 (327)
T ss_dssp EECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC------------------------------
T ss_pred hhhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhH
Confidence 344556788999999888888999999988 9999999999999762211000000 001112234468
Q ss_pred HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhc-cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHH
Q 045393 82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRM-TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPL 160 (580)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL 160 (580)
.|+..+..++++.|++.|.+++ . +|.+|.||||+|+..|+.++|++|+++|++++ ..+..|.|||
T Consensus 103 ~a~~~~~~~~~~~l~~~g~dvn-------------~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpL 168 (327)
T 1sw6_A 103 VSFDSLLQEVNDAFPNTQLNLN-------------IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCL 168 (327)
T ss_dssp -CHHHHHHHHHHHCTTSCCCSC-------------SCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHH
T ss_pred HHHHhhHHHHHHHHHhcCCCcc-------------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHH
Confidence 8999999999999999999876 4 68899999999999999999999999999987 6899999999
Q ss_pred HHHHHcCc---HHHHHHHHhcCCCCcCCCCCCCCccHHHHHHH----cCCHHHHHHHHhhCCccccccCCCCChHHHHHH
Q 045393 161 SIAIDARL---NDIACFIIDKSPESLNTTRLPDELTLIHFVVM----RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAA 233 (580)
Q Consensus 161 ~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~----~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~ 233 (580)
|+|+..|+ .++++.|++.+...++..+. .|.||||.|+. .|+.++++.|++.........
T Consensus 169 h~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~------------ 235 (327)
T 1sw6_A 169 VKAVKSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK------------ 235 (327)
T ss_dssp HHHHHSSHHHHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHG------------
T ss_pred HHHHHhcccccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcc------------
Confidence 99999998 67788888776555666666 99999999999 899999999998754321110
Q ss_pred HcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHh
Q 045393 234 ASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFIL 313 (580)
Q Consensus 234 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll 313 (580)
+...+...+.+.++++ +.++..|.||||.|+. +++|+++ + ++.+|..|+||||+|+++|+.+++++|+
T Consensus 236 --~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~~Ll 303 (327)
T 1sw6_A 236 --QNRPIQSGTNEKESKP-NDKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVDALL 303 (327)
T ss_dssp --GGCCEEEC-----------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred --cchHHHhhhhcccCCc-ccccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 0001111123446665 6678888999998885 8888888 3 6778889999999999999999999999
Q ss_pred cCcchhhhcccccCCCCcHHHHHHhcC
Q 045393 314 RSPEMENLINLVDRNGNTPLHLAAMGL 340 (580)
Q Consensus 314 ~~~~~~~~~n~~d~~G~T~Lh~A~~~~ 340 (580)
++ +++++.+|.+|+||||+|+++|
T Consensus 304 ~~---Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 304 DY---GADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HT---TCCTTCCCTTSCCGGGGTCC--
T ss_pred Hc---CCCCcccCCCCCCHHHHHHhcC
Confidence 88 4558899999999999988764
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.9e-33 Score=265.75 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=145.1
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Q 045393 71 QKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150 (580)
Q Consensus 71 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~ 150 (580)
.+|..|.||||+|+..|+.++++.|++.+.... ..++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 72 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL---------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE- 72 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----C---------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccH---------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence 467889999999999999999998888775320 1133578889999999999999999999999888776
Q ss_pred ccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHH
Q 045393 151 YINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH 230 (580)
Q Consensus 151 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~ 230 (580)
..+..|.||||+|+..|+.+++++|++.+.... .....+..+..|.||||
T Consensus 73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------------------------~~~~~~~~~~~g~t~L~ 122 (236)
T 1ikn_D 73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH------------------------------LHSILKATNYNGHTCLH 122 (236)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTS------------------------------SSCGGGCCCTTCCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh------------------------------HHHHhhccCCCCCCHHH
Confidence 467788888888888888888888887764210 01123445556666666
Q ss_pred HHHHcCChHHHHHHHHhchhcccccCC-CCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHH
Q 045393 231 YAAASGNVKMAQRLLEESKRLAYKRDC-NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309 (580)
Q Consensus 231 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv 309 (580)
+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++
T Consensus 123 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~ 200 (236)
T 1ikn_D 123 LASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQ 200 (236)
T ss_dssp HHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHH
Confidence 666666666666666666665 34443 666666666666666666666666666 566666666666666666666666
Q ss_pred HHHhcCcchhhhcccccCCCCcHHHHH
Q 045393 310 SFILRSPEMENLINLVDRNGNTPLHLA 336 (580)
Q Consensus 310 ~~Ll~~~~~~~~~n~~d~~G~T~Lh~A 336 (580)
++|+++|... ....++..|.||.+.+
T Consensus 201 ~~Ll~~ga~~-~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 201 QQLGQLTLEN-LQMLPESEDEESYDTE 226 (236)
T ss_dssp HHHHTTSCGG-GSSCCCCCTTTCCCCC
T ss_pred HHHHHcchhh-hhcCCccchHHHHhhh
Confidence 6666664421 1234555555555443
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=4.4e-33 Score=263.20 Aligned_cols=215 Identities=21% Similarity=0.300 Sum_probs=164.2
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC---CcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCcc
Q 045393 117 MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVP---SSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELT 193 (580)
Q Consensus 117 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t 193 (580)
..|.+|.||||+|+..|+.+++++|++.+... ....+. .|.|
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----------------------------------~g~t 47 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-----------------------------------LQQT 47 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-----------------------------------TCCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC-----------------------------------CCCC
Confidence 35666777777777777777777776665421 123344 4455
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhc-----ccccCCCCCcHHHHHHH
Q 045393 194 LIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL-----AYKRDCNGETPLHLAAE 268 (580)
Q Consensus 194 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~ 268 (580)
|||.|+..|+.++++.|++.+.. ++.+|..|.||||+|+..|+.+++++|++.+++. .+..+..|.||||+|+.
T Consensus 48 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 126 (236)
T 1ikn_D 48 PLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126 (236)
T ss_dssp HHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHH
Confidence 55555555555555555554433 5667778888888888888899999998887542 35678889999999999
Q ss_pred cCcHHHHHHHHHhCCCccccccC-CCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHH
Q 045393 269 NGKLKVLKLLINKYPDAIEIRNN-SDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347 (580)
Q Consensus 269 ~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~ 347 (580)
.|+.+++++|+++|++ ++.++. .|+||||+|+..|+.+++++|+++ +++++.+|..|.||||+|+..++.+++++
T Consensus 127 ~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~ 202 (236)
T 1ikn_D 127 HGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQ 202 (236)
T ss_dssp TTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHH
T ss_pred cCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcccCCCCCHHHHHHccCchHHHHH
Confidence 9999999999999999 888887 999999999999999999999999 45599999999999999999999999999
Q ss_pred hhcCcccccc--cccccCCCCCHHHHHHH
Q 045393 348 LSRHKSVNIR--AKNHSARSNTALEIAEI 374 (580)
Q Consensus 348 Ll~~~~~d~~--~~n~~~~g~t~l~~a~~ 374 (580)
|+++ |+++. .++. +|.||.+.+..
T Consensus 203 Ll~~-ga~~~~~~~~~--~~~~~~~~~~~ 228 (236)
T 1ikn_D 203 LGQL-TLENLQMLPES--EDEESYDTESE 228 (236)
T ss_dssp HHTT-SCGGGSSCCCC--CTTTCCCCC--
T ss_pred HHHc-chhhhhcCCcc--chHHHHhhhcc
Confidence 9965 88877 6777 99999887655
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=2.1e-31 Score=250.88 Aligned_cols=197 Identities=19% Similarity=0.188 Sum_probs=171.3
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcc----cccCCCCCcHHHH
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLA----YKRDCNGETPLHL 265 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~g~tpL~~ 265 (580)
.|.||||.|+..|+.++++.|++..+..++.+|..|+||||+|+..|+.+++++|++.+++.. +.+|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 478889999999999999888888555688889999999999999999999999999987753 3456689999999
Q ss_pred HHHcCcHHHHHHHHHhCCCccccccC-------------CCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcH
Q 045393 266 AAENGKLKVLKLLINKYPDAIEIRNN-------------SDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTP 332 (580)
Q Consensus 266 A~~~g~~~~v~~Ll~~~~~~~~~~d~-------------~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~ 332 (580)
|+..|+.+++++|+++|++ ++.++. .|+||||+|+..|+.+++++|+++ ++++|.+|.+|+||
T Consensus 82 A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH---GADIRAQDSLGNTV 157 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCH
T ss_pred HHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCH
Confidence 9999999999999999988 666654 799999999999999999999998 45599999999999
Q ss_pred HHHHHhcCChhHH----HHhhcCccccc------ccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHhhhhhhc
Q 045393 333 LHLAAMGLHSDVV----FTLSRHKSVNI------RAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTAYAKRAL 400 (580)
Q Consensus 333 Lh~A~~~~~~~~~----~~Ll~~~~~d~------~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~ 400 (580)
||+|+..++.+++ ++|++. |+++ +.+|. .|+|||++|.. .+..++++.|+++|+....
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~~--~g~tpl~~A~~-------~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNN--QGLTPFKLAGV-------EGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHT-TCSCSSCCGGGCCCT--TSCCHHHHHHH-------HTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCChHHHHHHHHHHHhc-CCchhhhhhhccCCC--CCCCHHHHHHH-------cCCHHHHHHHHhcCccchh
Confidence 9999999999988 888865 7777 68899 99999999998 5678999999999987654
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=3.2e-31 Score=249.69 Aligned_cols=211 Identities=22% Similarity=0.216 Sum_probs=172.7
Q ss_pred CCCchhhHHHhcCCHHHHHHHHhh-CchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchh
Q 045393 33 GGNAVLHMAVRFRNQQVIREILRQ-QDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVL 111 (580)
Q Consensus 33 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 111 (580)
.|+||||+|+..|+.+++++|++. |.+ ++.+|..|+||||+|+..|+.+++++|+++|++....
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~---------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------ 66 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE---------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE------ 66 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC---------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc------
Confidence 489999999999999999999998 776 8889999999999999999999999999999885321
Q ss_pred hhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE 191 (580)
Q Consensus 112 ~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 191 (580)
....+|..|.||||+|+..|+.+++++|+++|++++.. +.. +.+. ......+. .|
T Consensus 67 --~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~--~~~~-------------------~~~~~~~~-~g 121 (232)
T 2rfa_A 67 --PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR-ATG--SVFH-------------------YRPHNLIY-YG 121 (232)
T ss_dssp --CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCS--GGGS-------------------CCTTCSCC-CC
T ss_pred --cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcc-cCC--ccee-------------------eccccccc-CC
Confidence 12346789999999999999999999999999987642 221 1100 11222333 68
Q ss_pred ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHH----HHHHHhchhcc-----cccCCCCCcH
Q 045393 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA----QRLLEESKRLA-----YKRDCNGETP 262 (580)
Q Consensus 192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v----~~Ll~~~~~~~-----~~~~~~g~tp 262 (580)
.||||.|+..|+.++++.|++.+.+ ++.+|..|+||||+|+..|+.+++ ++|++.|++.. +.+|..|.||
T Consensus 122 ~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp 200 (232)
T 2rfa_A 122 EHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200 (232)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH
Confidence 8888888888888888888887655 788888899999999999988877 88888887653 5678889999
Q ss_pred HHHHHHcCcHHHHHHHHHhCCC
Q 045393 263 LHLAAENGKLKVLKLLINKYPD 284 (580)
Q Consensus 263 L~~A~~~g~~~~v~~Ll~~~~~ 284 (580)
||+|+..|+.+++++|++++++
T Consensus 201 l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 201 FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCcc
Confidence 9999999999999999998866
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.5e-30 Score=239.31 Aligned_cols=192 Identities=20% Similarity=0.284 Sum_probs=113.2
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHH
Q 045393 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVV 199 (580)
Q Consensus 120 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~ 199 (580)
..+.||||.|+..|+.+.++.|++.+.......+..|.||||+|+..|+.+++++|++++.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------------- 63 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA------------------- 63 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-------------------
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------------------
Confidence 3466677777777777777777666653333455566666666666666666666666552
Q ss_pred HcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHH
Q 045393 200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLI 279 (580)
Q Consensus 200 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 279 (580)
+ ++..+..|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|+
T Consensus 64 ----------------~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 126 (201)
T 3hra_A 64 ----------------D-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126 (201)
T ss_dssp ----------------C-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHH
T ss_pred ----------------C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Confidence 2 34445555566666666666666666664443333455555666666666666666666666
Q ss_pred HhCCCccccccCCCCCHHHHHHHcCC-----HHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393 280 NKYPDAIEIRNNSDRSILHVAAKHGN-----WNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350 (580)
Q Consensus 280 ~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~ 350 (580)
++++..++.+|..|+||||+|+..++ .+++++|+++| ++++.+|..|+||||+|+..|+.+++++|++
T Consensus 127 ~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCC---CCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 66632255666666666666666555 56666666653 3356666666666666666666666666654
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.5e-30 Score=239.32 Aligned_cols=180 Identities=18% Similarity=0.266 Sum_probs=167.7
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 269 (580)
.+.+|||.|+..|+.+.++.++..++..++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 68899999999999999999999988779999999999999999999999999999999988 77889999999999999
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCC-----hhH
Q 045393 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLH-----SDV 344 (580)
Q Consensus 270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~-----~~~ 344 (580)
|+.+++++|++++...++.+|..|+||||+|+..|+.+++++|++.+. .+++.+|..|+||||+|+..++ .++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR--EDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC--CCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 999999999977765589999999999999999999999999999851 4589999999999999999998 899
Q ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHH
Q 045393 345 VFTLSRHKSVNIRAKNHSARSNTALEIAEIT 375 (580)
Q Consensus 345 ~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~ 375 (580)
+++|+++ |+|++.+|. .|+|||++|...
T Consensus 161 v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~~ 188 (201)
T 3hra_A 161 VKLLMEN-GADQSIKDN--SGRTAMDYANQK 188 (201)
T ss_dssp HHHHHHT-TCCTTCCCT--TSCCHHHHHHHH
T ss_pred HHHHHHC-CCCCCccCC--CCCCHHHHHHHc
Confidence 9999976 899999999 999999999873
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=3.1e-31 Score=256.32 Aligned_cols=220 Identities=19% Similarity=0.242 Sum_probs=168.9
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHc----CCCCCc---ccccCCCCHHHHHHHc---CcHHHHHHHHhcCCCCcCCC
Q 045393 117 MTDIEGNTPLHNAVTNQHKRVIRILVEK----DSVPSS---YINKAYQTPLSIAIDA---RLNDIACFIIDKSPESLNTT 186 (580)
Q Consensus 117 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~----~~~~~~---~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~~ 186 (580)
..|..|.||||+|++.|+.++|+.|++. +.+... ..+..|.||||+|+.. |+.+++++|++.+....
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~--- 84 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD--- 84 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT---
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc---
Confidence 4788999999999999999999988874 444332 3477899999999976 89999999998874210
Q ss_pred CCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCC---------
Q 045393 187 RLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDC--------- 257 (580)
Q Consensus 187 ~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------- 257 (580)
.++.++... ....|..|.||||+|+..|+.+++++|+++|+++ +.++.
T Consensus 85 -------------------~~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~ 141 (273)
T 2pnn_A 85 -------------------SLKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKG 141 (273)
T ss_dssp -------------------CHHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSS
T ss_pred -------------------chhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Cccccccccccccc
Confidence 011222221 2335678999999999999999999999999887 55554
Q ss_pred -----CCCcHHHHHHHcCcHHHHHHHHH---hCCCccccccCCCCCHHHHHHHcCC---------HHHHHHHhcCcchhh
Q 045393 258 -----NGETPLHLAAENGKLKVLKLLIN---KYPDAIEIRNNSDRSILHVAAKHGN---------WNIVSFILRSPEMEN 320 (580)
Q Consensus 258 -----~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~ 320 (580)
.|.||||+|+..|+.+++++|++ +|++ ++.+|..|+||||+|+..|+ .+++++|++++ +
T Consensus 142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g---a 217 (273)
T 2pnn_A 142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG---A 217 (273)
T ss_dssp SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---H
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh---h
Confidence 79999999999999999999999 8888 89999999999999999998 79999999984 4
Q ss_pred hcc-------cccCCCCcHHHHHHhcCChhHHHHhhcCccc-ccccccccCCCCCHH
Q 045393 321 LIN-------LVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV-NIRAKNHSARSNTAL 369 (580)
Q Consensus 321 ~~n-------~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~-d~~~~n~~~~g~t~l 369 (580)
++| .+|..|+||||+|+..|+.+++++|+++ |+ |+..... .+.+|-
T Consensus 218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~dp~~~~~--~~~~~~ 271 (273)
T 2pnn_A 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-EIHEPECRHA--AAHHHH 271 (273)
T ss_dssp HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTC---------------
T ss_pred hcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC-CCCCchhhhh--hhhhcc
Confidence 465 5899999999999999999999999986 55 8887777 666553
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=7.4e-31 Score=253.68 Aligned_cols=236 Identities=17% Similarity=0.143 Sum_probs=148.5
Q ss_pred ccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcc----cccCCCCcHHHHHHHh---CCHHHHHHHHhcC
Q 045393 27 FSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLR----QKNLMDETALHIAARI---GDRAIVSEIMKYL 99 (580)
Q Consensus 27 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~----~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~ 99 (580)
....+..|.||||+|+..|+.++|+.|++.+.+. ...++ ..|..|+||||+|+.. |+.+++++|+++|
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRS-----KKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHS-----CCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhc-----ccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3457889999999999999999999999865430 00122 4588999999999987 9999999999998
Q ss_pred cccccCCCcchhhhhhh----ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHH
Q 045393 100 PAVNQVGPAPVLESLFR----MTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFI 175 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~l~----~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L 175 (580)
++.+. ....++ ..|..|.||||+|+..|+.+++++|+++|++++. .+..+.
T Consensus 81 a~~~~------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~------------------ 135 (273)
T 2pnn_A 81 RKTDS------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA-AANGDF------------------ 135 (273)
T ss_dssp HHTTC------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBCSGG------------------
T ss_pred ccccc------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cccccc------------------
Confidence 76431 011122 2567899999999999999999999999998764 333220
Q ss_pred HhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHh---hCCccccccCCCCChHHHHHHHcCC---------hHHHHH
Q 045393 176 IDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILG---TNKELIDRLDWHQRNPLHYAAASGN---------VKMAQR 243 (580)
Q Consensus 176 l~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~t~L~~A~~~g~---------~~~v~~ 243 (580)
. ........+. .|.||||.|+..|+.+++++|++ .+. +++.+|..|+||||+|+..|+ .+++++
T Consensus 136 ~--~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga-d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~ 211 (273)
T 2pnn_A 136 F--KKTKGRPGFY-FGELPLSLAACTNQLAIVKFLLQNSWQPA-DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211 (273)
T ss_dssp G--SSCSSSCCCC-SCBSHHHHHHHTTCHHHHHHHHHCSSCCC-CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred c--cccccccccc-CCCCHHHHHHHcCCHHHHHHHHhcccCCC-CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHH
Confidence 0 0001111122 45666666666666666666666 333 366666666677776666665 566667
Q ss_pred HHHhchhcc------cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCH
Q 045393 244 LLEESKRLA------YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI 296 (580)
Q Consensus 244 Ll~~~~~~~------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 296 (580)
|+++|+++. +.+|..|.||||+|+..|+.+++++|+++|+.........+.+|
T Consensus 212 Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp HHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred HHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 777666653 23566666666666666666666666666664355544444444
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=9.5e-31 Score=250.39 Aligned_cols=199 Identities=22% Similarity=0.244 Sum_probs=172.0
Q ss_pred CCccHHHHHHHcCCHH----HHHHHHhhCCccccc----cCCCCChHHHHHHHc---CChHHHHHHHHhchhcccc----
Q 045393 190 DELTLIHFVVMRQNYD----IMVKILGTNKELIDR----LDWHQRNPLHYAAAS---GNVKMAQRLLEESKRLAYK---- 254 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~~----~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~---- 254 (580)
.|.||||.|+..|+.+ +++++++.+.+ ++. .|..|+||||+|+.. |+.+++++|++.|++....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 3678999999999887 44555556655 666 799999999999999 9999999999999876322
Q ss_pred ------cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC-------------CCCHHHHHHHcCCHHHHHHHhcC
Q 045393 255 ------RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS-------------DRSILHVAAKHGNWNIVSFILRS 315 (580)
Q Consensus 255 ------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~iv~~Ll~~ 315 (580)
+|..|.||||+|+..|+.+++++|+++|++ ++.+|.. |+||||+|+..|+.+++++|++.
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 246799999999999999999999999999 7888876 99999999999999999999993
Q ss_pred cchhhhcccccCCCCcHHHHHHh--cCChh-------HHHHhhcCccccc-------ccccccCCCCCHHHHHHHHhhCC
Q 045393 316 PEMENLINLVDRNGNTPLHLAAM--GLHSD-------VVFTLSRHKSVNI-------RAKNHSARSNTALEIAEITRANG 379 (580)
Q Consensus 316 ~~~~~~~n~~d~~G~T~Lh~A~~--~~~~~-------~~~~Ll~~~~~d~-------~~~n~~~~g~t~l~~a~~~~~~~ 379 (580)
+..++++|.+|.+|+||||+|+. .++.+ ++++|+++ |+++ +.+|. .|+|||++|..
T Consensus 159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~--~g~tpL~~A~~----- 230 (256)
T 2etb_A 159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNH--QGLTPLKLAAK----- 230 (256)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCT--TSCCHHHHHHH-----
T ss_pred cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCC--CCCCHHHHHHH-----
Confidence 22255699999999999999999 77887 99999975 9999 99999 99999999998
Q ss_pred hhhHHHHHHHHHHHhhhhhhc
Q 045393 380 KEIQKHLTLKALKTAYAKRAL 400 (580)
Q Consensus 380 ~~~~~~~~~~~L~~~ga~~~~ 400 (580)
.+..++++.|+++|++..+
T Consensus 231 --~g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 231 --EGKIEIFRHILQREFSGAA 249 (256)
T ss_dssp --TTCHHHHHHHHHHHHHHHH
T ss_pred --hCCHHHHHHHHhCCCCCCC
Confidence 5678899999999988654
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.9e-30 Score=230.07 Aligned_cols=159 Identities=30% Similarity=0.446 Sum_probs=143.2
Q ss_pred cHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcH
Q 045393 193 TLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKL 272 (580)
Q Consensus 193 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 272 (580)
+.|+.|+..|+.++++.|++.+.+ ++.+|.+|+||||+|+..++.++++.|++.|+++ +.+|..|.||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence 468899999999999999998866 8999999999999999999999999999999988 77899999999999999999
Q ss_pred HHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCc
Q 045393 273 KVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK 352 (580)
Q Consensus 273 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~ 352 (580)
+++++|+++|++ ++.+|.+|+||||+|+++|+.+++++|++.+ ++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus 84 ~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~- 158 (169)
T 4gpm_A 84 EVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKG---ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ- 158 (169)
T ss_dssp HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHHHHHHHHC-
Confidence 999999999999 8999999999999999999999999999984 55999999999999999999999999999965
Q ss_pred cccccc
Q 045393 353 SVNIRA 358 (580)
Q Consensus 353 ~~d~~~ 358 (580)
|++++-
T Consensus 159 GA~ie~ 164 (169)
T 4gpm_A 159 GGWLEH 164 (169)
T ss_dssp ------
T ss_pred CCCcCC
Confidence 888754
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2.2e-30 Score=229.58 Aligned_cols=156 Identities=24% Similarity=0.369 Sum_probs=142.0
Q ss_pred HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393 3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI 82 (580)
Q Consensus 3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~ 82 (580)
++|+.||+.|+.++++.|++.|...+..|.+|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad---------~~~~d~~g~TpLh~ 76 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD---------VNAKDSDGRTPLHH 76 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc---------hhhhccCCCCHHHH
Confidence 579999999999999999999988888999999999999999999999999999998 88899999999999
Q ss_pred HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHH
Q 045393 83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI 162 (580)
Q Consensus 83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 162 (580)
|+..|+.+++++|+++|++++ .+|.+|+||||+|++.|+.+++++|+++|++++ ..|..|.|||++
T Consensus 77 A~~~g~~~~v~~Ll~~gadvn-------------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~ 142 (169)
T 4gpm_A 77 AAENGHKEVVKLLISKGADVN-------------AKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDL 142 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHCcCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHH
Confidence 999999999999999998876 478899999999999999999999999999887 578899999999
Q ss_pred HHHcCcHHHHHHHHhcCCC
Q 045393 163 AIDARLNDIACFIIDKSPE 181 (580)
Q Consensus 163 A~~~~~~~~v~~Ll~~~~~ 181 (580)
|+..|+.+++++|+++|+.
T Consensus 143 A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 143 AREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHTTCHHHHHHHHTC---
T ss_pred HHHcCCHHHHHHHHHCCCC
Confidence 9999999999999999863
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=4.7e-30 Score=245.58 Aligned_cols=216 Identities=17% Similarity=0.204 Sum_probs=165.8
Q ss_pred CCchhhHHHhcCCHH----HHHHHHhhCchhHHhhhhhhccc----ccCCCCcHHHHHHHh---CCHHHHHHHHhcCccc
Q 045393 34 GNAVLHMAVRFRNQQ----VIREILRQQDFIALRLHYSLLRQ----KNLMDETALHIAARI---GDRAIVSEIMKYLPAV 102 (580)
Q Consensus 34 g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~~----~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~ 102 (580)
|+||||+|+..|+.+ ++++|++.|.+ ++. +|..|+||||+|+.. |+.+++++|++.|+++
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~---------i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~ 72 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKY---------LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDS 72 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCC---------TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCC---------cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcc
Confidence 789999999999997 66777778887 676 899999999999999 9999999999999886
Q ss_pred ccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Q 045393 103 NQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPES 182 (580)
Q Consensus 103 ~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~ 182 (580)
+.... .+......+|..|.||||+|+..|+.+++++|+++|++++. .+..+..+ ..
T Consensus 73 ~~~~~--~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~---------------------~~ 128 (256)
T 2etb_A 73 GNPKP--LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL-RACGRFFQ---------------------KH 128 (256)
T ss_dssp TCSSC--GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGS---------------------CC
T ss_pred cchhh--hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cccccccc---------------------cc
Confidence 53221 01111223567899999999999999999999999998764 34332110 11
Q ss_pred cCCCCCCCCccHHHHHHHcCCHHHHHHHHh---hCCccccccCCCCChHHHHHHH--cCChH-------HHHHHHHhchh
Q 045393 183 LNTTRLPDELTLIHFVVMRQNYDIMVKILG---TNKELIDRLDWHQRNPLHYAAA--SGNVK-------MAQRLLEESKR 250 (580)
Q Consensus 183 ~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~t~L~~A~~--~g~~~-------~v~~Ll~~~~~ 250 (580)
....+. .|.||||.|+..|+.++++.|++ .+. +++.+|..|+||||+|+. .++.+ ++++|+++|++
T Consensus 129 ~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga-~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~ 206 (256)
T 2etb_A 129 QGTCFY-FGELPLSLAACTKQWDVVTYLLENPHQPA-SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR 206 (256)
T ss_dssp SSSCCC-SCSSHHHHHHHTTCHHHHHHHHHCSSCCC-CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-CCCCHHHHHHHcCCHHHHHHHHhccccCC-CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC
Confidence 111111 47777777777777777777777 443 377788888888888888 67777 88999998887
Q ss_pred cc------cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 045393 251 LA------YKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284 (580)
Q Consensus 251 ~~------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 284 (580)
+. +.+|..|.||||+|+..|+.+++++|++++++
T Consensus 207 ~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 207 LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 73 56788899999999999999999999988776
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=2.1e-29 Score=241.67 Aligned_cols=200 Identities=19% Similarity=0.155 Sum_probs=167.8
Q ss_pred CCccHHHHHHHcCCHHHHHHHHh----hCCccccccC----CCCChHHHHHH---HcCChHHHHHHHHhchhcc------
Q 045393 190 DELTLIHFVVMRQNYDIMVKILG----TNKELIDRLD----WHQRNPLHYAA---ASGNVKMAQRLLEESKRLA------ 252 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~d----~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~------ 252 (580)
.+.++||.|+..|+.+.++.+++ .+.. ++..+ ..|.||||+|+ +.|+.+++++|++.|++..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 67788888888888886555554 5544 44443 77999999999 7799999999999986531
Q ss_pred ----cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc--------------CCCCCHHHHHHHcCCHHHHHHHhc
Q 045393 253 ----YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN--------------NSDRSILHVAAKHGNWNIVSFILR 314 (580)
Q Consensus 253 ----~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~iv~~Ll~ 314 (580)
...|..|.||||+|+..|+.+++++|+++|++ ++.+| ..|+||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 23344899999999999999999999999999 78888 689999999999999999999999
Q ss_pred CcchhhhcccccCCCCcHHHHHHhcCC---------hhHHHHhhcCccccc-------ccccccCCCCCHHHHHHHHhhC
Q 045393 315 SPEMENLINLVDRNGNTPLHLAAMGLH---------SDVVFTLSRHKSVNI-------RAKNHSARSNTALEIAEITRAN 378 (580)
Q Consensus 315 ~~~~~~~~n~~d~~G~T~Lh~A~~~~~---------~~~~~~Ll~~~~~d~-------~~~n~~~~g~t~l~~a~~~~~~ 378 (580)
.+..+.++|.+|..|+||||+|+..++ .+++++|+++ |+++ +.+|. .|+|||++|..
T Consensus 162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~--~g~tpL~~A~~---- 234 (260)
T 3jxi_A 162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNN--DGLSPLMMAAK---- 234 (260)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCT--TSCCHHHHHHH----
T ss_pred ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccC--CCCCHHHHHHH----
Confidence 322256699999999999999998887 6899999965 8998 77999 99999999998
Q ss_pred ChhhHHHHHHHHHHHhhhhhhcc
Q 045393 379 GKEIQKHLTLKALKTAYAKRALS 401 (580)
Q Consensus 379 ~~~~~~~~~~~~L~~~ga~~~~~ 401 (580)
.++.++++.|+++|++..++
T Consensus 235 ---~g~~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 235 ---TGKIGIFQHIIRREIADAAA 254 (260)
T ss_dssp ---TTCHHHHHHHHHHHHHHHC-
T ss_pred ---cCCHHHHHHHHHhCCCcccc
Confidence 56789999999999987654
No 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=6.2e-29 Score=222.35 Aligned_cols=170 Identities=21% Similarity=0.227 Sum_probs=151.2
Q ss_pred CccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcC
Q 045393 191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG 270 (580)
Q Consensus 191 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 270 (580)
+.+|||.|+..|+.+.++.+++.++..++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 4578999999999999999999998888999999999999999999999999999999887 777889999999999999
Q ss_pred cHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393 271 KLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350 (580)
Q Consensus 271 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~ 350 (580)
+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..++.+++++|++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (172)
T 3v30_A 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARG---ADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156 (172)
T ss_dssp CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence 99999999999999 8999999999999999999999999999984 5589999999999999999999999999996
Q ss_pred CcccccccccccCCCCCH
Q 045393 351 HKSVNIRAKNHSARSNTA 368 (580)
Q Consensus 351 ~~~~d~~~~n~~~~g~t~ 368 (580)
+ ++++..+|. .|.||
T Consensus 157 ~-~~~~~~~~~--~~~~p 171 (172)
T 3v30_A 157 H-ILKLFQSNL--VPADP 171 (172)
T ss_dssp H-HHHHSCC---------
T ss_pred H-HHHHhcccC--CCCCC
Confidence 5 889988888 88887
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=4.4e-29 Score=239.40 Aligned_cols=213 Identities=21% Similarity=0.246 Sum_probs=155.4
Q ss_pred cCCCCcHHHHHHHhCCHHHHHHHHh----cCcccccCCCcchhhhhhhccCCCCCcHHHHHH---HcCcHHHHHHHHHcC
Q 045393 73 NLMDETALHIAARIGDRAIVSEIMK----YLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAV---TNQHKRVIRILVEKD 145 (580)
Q Consensus 73 ~~~g~tpLh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~---~~~~~~~v~~Ll~~~ 145 (580)
+..++|+||.|++.|+.+.++.|++ .+.+++... ...|..|.||||+|+ +.|+.+++++|++.|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE---------FREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh---------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4678999999999999996555554 887765321 124578999999999 779999999999988
Q ss_pred CCCC----------cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCC
Q 045393 146 SVPS----------SYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNK 215 (580)
Q Consensus 146 ~~~~----------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~ 215 (580)
++.. ...|..|.||||+|+..|+.+++++|++++.+ ++..+. .+. ..+
T Consensus 73 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~-~~~--------------------~~~ 130 (260)
T 3jxi_A 73 EKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQAR-GRF--------------------FQP 130 (260)
T ss_dssp HHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCE-ECC--------------------CSS
T ss_pred ccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCcccc-ccc--------------------cCc
Confidence 6432 12344677777777777777777777776632 222221 000 000
Q ss_pred ccccccCCCCChHHHHHHHcCChHHHHHHHH---hchhcccccCCCCCcHHHHHHHcCc---------HHHHHHHHHhCC
Q 045393 216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLE---ESKRLAYKRDCNGETPLHLAAENGK---------LKVLKLLINKYP 283 (580)
Q Consensus 216 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~ 283 (580)
......+..|.||||+|+..|+.+++++|++ .|+++ +.+|..|.||||+|+..|+ .+++++|+++|+
T Consensus 131 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga 209 (260)
T 3jxi_A 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209 (260)
T ss_dssp SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc
Confidence 1122233678888888888888888888888 77777 6778888888888887777 688888888887
Q ss_pred Ccc-------ccccCCCCCHHHHHHHcCCHHHHHHHhcCcch
Q 045393 284 DAI-------EIRNNSDRSILHVAAKHGNWNIVSFILRSPEM 318 (580)
Q Consensus 284 ~~~-------~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 318 (580)
+ + +.+|..|+||||+|+++|+.+++++|++++..
T Consensus 210 ~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 210 K-LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp H-HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-cccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 7 4 67888899999999999999999999888554
No 56
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=9.9e-31 Score=261.52 Aligned_cols=298 Identities=13% Similarity=0.095 Sum_probs=204.3
Q ss_pred HcCCHHHHHHHhhhcCcccccCCCCCchhhHHHh-cCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCC
Q 045393 10 RHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVR-FRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGD 88 (580)
Q Consensus 10 ~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~ 88 (580)
..+..+.+..++....... ...+.+++++|.. .++.+++++++++|.+ ++||||.|++.|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~--~~~~ll~~~~a~~~~~~~~~~~~l~~~g~~----------------~~T~Lh~Aa~~G~ 104 (376)
T 2aja_A 43 TLSYKEAIHIFLPGTKNME--QVRQLLCLYYAHYNRNAKQLWSDAHKKGIK----------------SEVICFVAAITGC 104 (376)
T ss_dssp HSCHHHHHHHCCCCSSHHH--HHHHHHHHHHHHTTTTCTTHHHHHHHHTCC----------------HHHHHHHHHHHCC
T ss_pred hccHHHHHHHHhcCCCCHH--HHHHHHHHHHHHhcCCCHHHHHHHHHcCCC----------------cCCHHHHHHHcCC
Confidence 3444555555554332111 1123567788776 5789999999988765 3599999999999
Q ss_pred HHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC--cccccCCCCHHHHHHHc
Q 045393 89 RAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS--SYINKAYQTPLSIAIDA 166 (580)
Q Consensus 89 ~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~ 166 (580)
.+++++|+++|+.... ....|..|.||||+|+++|+.++|++|+++|++.. ...+.+ .||||+|+..
T Consensus 105 ~e~v~~Ll~~ga~~~~----------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~ 173 (376)
T 2aja_A 105 SSALDTLCLLLTSDEI----------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN 173 (376)
T ss_dssp HHHHHHHTTC--CCSS----------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHcCCcHHH----------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC
Confidence 9999999999873211 11245567899999999999999999999997532 122333 8999999999
Q ss_pred CcHHHHHHHHhcCCCCcC-CCCCCCCccHHHHHH-HcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHH
Q 045393 167 RLNDIACFIIDKSPESLN-TTRLPDELTLIHFVV-MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244 (580)
Q Consensus 167 ~~~~~v~~Ll~~~~~~~~-~~~~~~~~t~L~~A~-~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L 244 (580)
|+.+++++|++++++... ..+. .|.||||.|+ ..|+.+++++|++.+. .|.||||.|+..|+.+++++|
T Consensus 174 G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL 244 (376)
T 2aja_A 174 GHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFI 244 (376)
T ss_dssp TCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHH
T ss_pred CCHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHH
Confidence 999999999999854221 1333 6889999999 9999999999998542 278999999999999999999
Q ss_pred HHhchhcccccCCCCCcHHHHHHHcCcHHH------------HHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHH
Q 045393 245 LEESKRLAYKRDCNGETPLHLAAENGKLKV------------LKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312 (580)
Q Consensus 245 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~------------v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L 312 (580)
+++|++.. ..+ ++++.|+.+|+.++ ++.|+.++.. +..+.+++|
T Consensus 245 ~~~ga~~~-~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~-------------------~~~~~~~~L 300 (376)
T 2aja_A 245 ARHVNRLK-EMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE-------------------VLLDDIRFL 300 (376)
T ss_dssp HHHHHHHH-HHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCG-------------------GGHHHHHHH
T ss_pred HhcCcccc-ccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchh-------------------hHHHHHHHH
Confidence 99988763 222 36777887777663 3445544321 235667777
Q ss_pred hcCcchhhhc--ccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHH
Q 045393 313 LRSPEMENLI--NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEIT 375 (580)
Q Consensus 313 l~~~~~~~~~--n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~ 375 (580)
++.+...... ...++.++||||+|+..|+.+++++|++.+ ..++. .|+|++++|+..
T Consensus 301 l~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~--~~~~~~~~~~~~ 359 (376)
T 2aja_A 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----SVLAL--TKANNYYINETG 359 (376)
T ss_dssp HTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHS--CC----------
T ss_pred HhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHH--HHHhcccccccc
Confidence 7654332222 223456788999999999999999998753 55666 888888888763
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=238.29 Aligned_cols=189 Identities=20% Similarity=0.233 Sum_probs=115.3
Q ss_pred cHHHHHHHcCCHHHHHHHHhhCCc-cccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHH----
Q 045393 193 TLIHFVVMRQNYDIMVKILGTNKE-LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAA---- 267 (580)
Q Consensus 193 t~L~~A~~~~~~~~~~~Ll~~~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~---- 267 (580)
+++|.|+..++.+.++.++..... .++..|.+|+||||+|+..|+.+++++|++.|+...+..+..|.||||+|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 344555555555555555544322 245556666666666666666666666666665333555666666666666
Q ss_pred -HcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHH
Q 045393 268 -ENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346 (580)
Q Consensus 268 -~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~ 346 (580)
..++.+++++|++.+.+ .+..|..|+||||+|+.+|+.+++++|++. ++++|.+|.+|+||||+|+..|+.++++
T Consensus 158 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~---gad~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLAC---EADVNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred hhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 44666666666666655 555566666666666666666666666666 3336666666666666666666666666
Q ss_pred HhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHh
Q 045393 347 TLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKTA 394 (580)
Q Consensus 347 ~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ 394 (580)
+|++..|+|++.+|. .|+|||++|.. .++.++++.|++.
T Consensus 234 ~Ll~~~gad~~~~d~--~g~TpL~~A~~-------~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 234 LLLAVPSCDISLTDR--DGSTALMVALD-------AGQSEIASMLYSR 272 (276)
T ss_dssp HHHTSTTCCTTCCCT--TSCCHHHHHHH-------HTCHHHHHHHHHH
T ss_pred HHHhcCCCCCcCcCC--CCCCHHHHHHH-------cCCHHHHHHHHhc
Confidence 666545666666666 66666666665 3445555555544
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=7.2e-29 Score=239.63 Aligned_cols=190 Identities=20% Similarity=0.296 Sum_probs=146.5
Q ss_pred HHHHHHHcCcHHHHHHHHhcCCC-CcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHH----
Q 045393 159 PLSIAIDARLNDIACFIIDKSPE-SLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAA---- 233 (580)
Q Consensus 159 pL~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~---- 233 (580)
++|.|+..++.+.++.+++.... ..+..+. .|.||||.|+..|+.++++.|++.+...++..+..|.||||+|+
T Consensus 79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 79 DAHPELVRRHLVTFRAMSARLLDYVVNIADS-NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TCCHHHHHHHHHHHHHHCHHHHHHHHTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCcCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 33444444444444444333211 1222333 66666666666666666666666666457777888888888888
Q ss_pred -HcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHH
Q 045393 234 -ASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFI 312 (580)
Q Consensus 234 -~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L 312 (580)
..++.++++.|++.|... ...+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~L 235 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLL 235 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 567889999999999766 66788899999999999999999999999999 899999999999999999999999999
Q ss_pred hc-CcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCccc
Q 045393 313 LR-SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV 354 (580)
Q Consensus 313 l~-~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~ 354 (580)
++ . +++++.+|.+|+||||+|+..|+.+++++|+++.++
T Consensus 236 l~~~---gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 236 LAVP---SCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HTST---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred HhcC---CCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 98 5 455899999999999999999999999999987554
No 59
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.7e-30 Score=259.85 Aligned_cols=219 Identities=10% Similarity=0.071 Sum_probs=167.5
Q ss_pred cCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHH-hCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCC
Q 045393 44 FRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAAR-IGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEG 122 (580)
Q Consensus 44 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g 122 (580)
.+..+.+..++....+ .+ ...+.+++++|.. .++.+++++++++|.+ +
T Consensus 44 ~~~~~~~~~~~~~~~~---------~~--~~~~ll~~~~a~~~~~~~~~~~~l~~~g~~--------------------~ 92 (376)
T 2aja_A 44 LSYKEAIHIFLPGTKN---------ME--QVRQLLCLYYAHYNRNAKQLWSDAHKKGIK--------------------S 92 (376)
T ss_dssp SCHHHHHHHCCCCSSH---------HH--HHHHHHHHHHHHTTTTCTTHHHHHHHHTCC--------------------H
T ss_pred ccHHHHHHHHhcCCCC---------HH--HHHHHHHHHHHHhcCCCHHHHHHHHHcCCC--------------------c
Confidence 4445666666655444 11 1134578888877 5788999999887644 4
Q ss_pred CcHHHHHHHcCcHHHHHHHHHcCCCCC--cccccCCCCHHHHHHHcCcHHHHHHHHhcCCCC--cCCCCCCCCccHHHHH
Q 045393 123 NTPLHNAVTNQHKRVIRILVEKDSVPS--SYINKAYQTPLSIAIDARLNDIACFIIDKSPES--LNTTRLPDELTLIHFV 198 (580)
Q Consensus 123 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~~~t~L~~A 198 (580)
.||||+|++.|+.+++++|++.|+... ...+..|.||||+|+..|+.+++++|++++++. .+... .+.||||.|
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~--~~~TpLh~A 170 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA--ENYHAFRLA 170 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH--HHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCC--CCCCHHHHH
Confidence 599999999999999999999987321 123556788999999999999999999998531 11111 228999999
Q ss_pred HHcCCHHHHHHHHhhCCccccc--cCCCCChHHHHHH-HcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHH
Q 045393 199 VMRQNYDIMVKILGTNKELIDR--LDWHQRNPLHYAA-ASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVL 275 (580)
Q Consensus 199 ~~~~~~~~~~~Ll~~~~~~~~~--~d~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 275 (580)
+..|+.+++++|++.+++ ++. .|..|.||||+|+ ..|+.+++++|++.|+. |.||||.|+.+|+.+++
T Consensus 171 a~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv 241 (376)
T 2aja_A 171 AENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVN 241 (376)
T ss_dssp HHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHH
T ss_pred HHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHH
Confidence 999999999999998876 454 7778899999999 99999999999987642 67999999999999999
Q ss_pred HHHHHhCCCccccccCCCCCHHHHHHHcCCHHHH
Q 045393 276 KLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIV 309 (580)
Q Consensus 276 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv 309 (580)
++|++++++ ++..| ++++.|+.+|+.+++
T Consensus 242 ~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv 270 (376)
T 2aja_A 242 PFIARHVNR-LKEMH----DAFKLSNPDGVFDLV 270 (376)
T ss_dssp HHHHHHHHH-HHHHH----TTTTTTSSSSCCCCS
T ss_pred HHHHhcCcc-ccccc----HHHHHHHHCCChhhh
Confidence 999999887 55444 478888888887754
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=5.7e-28 Score=220.24 Aligned_cols=164 Identities=24% Similarity=0.291 Sum_probs=139.5
Q ss_pred cccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCH
Q 045393 217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSI 296 (580)
Q Consensus 217 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 296 (580)
..+.+|..|+||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..|+.+++++|++++++ ++.+|..|+||
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~ 104 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTP 104 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCH
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence 35677888899999999999999999999888776 66778889999999999999999999998888 78888889999
Q ss_pred HHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHh
Q 045393 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITR 376 (580)
Q Consensus 297 Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~ 376 (580)
||+|+..|+.+++++|+++ +.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|. .|.||+++|..
T Consensus 105 L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~-- 176 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEH---GANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDL--TGLTAEASARI-- 176 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHT---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCT--TSCBHHHHHHH--
T ss_pred HHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCC--CCCCHHHHHHH--
Confidence 9999999999999999888 445888888899999999999999999988865 888888888 89999998887
Q ss_pred hCChhhHHHHHHHHHHHhh
Q 045393 377 ANGKEIQKHLTLKALKTAY 395 (580)
Q Consensus 377 ~~~~~~~~~~~~~~L~~~g 395 (580)
.+..+++++|++.|
T Consensus 177 -----~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 177 -----FGRQEVIKIFTEVR 190 (192)
T ss_dssp -----TTCHHHHHHHHHHH
T ss_pred -----hCcHHHHHHHHhcc
Confidence 45667888887765
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=2.6e-27 Score=209.47 Aligned_cols=156 Identities=22% Similarity=0.265 Sum_probs=131.5
Q ss_pred CHHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393 2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH 81 (580)
Q Consensus 2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh 81 (580)
.++|+.|++.|+.+++++|++.+...+..+..|+||||+|+. |+.+++++|++.|.+ ++.+|..|.||||
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN---------PDLKDRTGFAVIH 75 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC---------TTCCCTTSCCHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC---------CCCCCCCCCCHHH
Confidence 367888888888888888888876666778888888888888 888888888888887 7778888888888
Q ss_pred HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393 82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (580)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 161 (580)
+|+..|+.+++++|+++|++++ .+|..|.||||+|++.|+.+++++|+++|++.....+..|.|||+
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~ 142 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQADVN-------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHH
Confidence 8888888888888888887765 467788888888888888888888888888765577888888888
Q ss_pred HHHHcCcHHHHHHHHhcCC
Q 045393 162 IAIDARLNDIACFIIDKSP 180 (580)
Q Consensus 162 ~A~~~~~~~~v~~Ll~~~~ 180 (580)
+|+..|+.+++++|+++++
T Consensus 143 ~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 143 LARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHTTCHHHHHHHHHTC-
T ss_pred HHHHcCCHHHHHHHHHhCC
Confidence 8888888888888888774
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.7e-27 Score=217.09 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=140.1
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 269 (580)
.|.||||.|+..|+.++++.|++.+.. ++..+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..
T Consensus 34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 111 (192)
T 2rfm_A 34 YNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIF 111 (192)
T ss_dssp TCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHc
Confidence 778888888888888888888887654 7778888999999999999999999999999887 67788999999999999
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349 (580)
Q Consensus 270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll 349 (580)
|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus 112 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 187 (192)
T 2rfm_A 112 GYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLEL---GADISARDLTGLTAEASARIFGRQEVIKIFT 187 (192)
T ss_dssp TCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 999999999999998 889999999999999999999999999998 4458999999999999999999999999998
Q ss_pred cCc
Q 045393 350 RHK 352 (580)
Q Consensus 350 ~~~ 352 (580)
+.+
T Consensus 188 ~~~ 190 (192)
T 2rfm_A 188 EVR 190 (192)
T ss_dssp HHH
T ss_pred hcc
Confidence 653
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=2.4e-27 Score=210.91 Aligned_cols=158 Identities=23% Similarity=0.321 Sum_probs=82.2
Q ss_pred CChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcC
Q 045393 225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHG 304 (580)
Q Consensus 225 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 304 (580)
|.||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcC
Confidence 445555555555555555555555443 44455555555555555555555555555554 4555555555555555555
Q ss_pred CHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHH
Q 045393 305 NWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQK 384 (580)
Q Consensus 305 ~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~ 384 (580)
+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|. .|+||+++|.. .+.
T Consensus 81 ~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~--~g~t~l~~A~~-------~~~ 147 (167)
T 3v31_A 81 YTDIVKMLLDC---GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETD--SGYNSMDLAVA-------LGY 147 (167)
T ss_dssp CHHHHHHHHHH---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHH-------HTC
T ss_pred CHHHHHHHHHC---CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCC--CCCCHHHHHHH-------cCc
Confidence 55555555554 223455555555555555555555555555542 555555555 55555555554 233
Q ss_pred HHHHHHHHHhhhh
Q 045393 385 HLTLKALKTAYAK 397 (580)
Q Consensus 385 ~~~~~~L~~~ga~ 397 (580)
.++++.|++++++
T Consensus 148 ~~~~~~L~~~~~~ 160 (167)
T 3v31_A 148 RSVQQVIESHLLK 160 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 64
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=5.7e-27 Score=209.54 Aligned_cols=168 Identities=16% Similarity=0.141 Sum_probs=122.4
Q ss_pred CHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC
Q 045393 158 TPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237 (580)
Q Consensus 158 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~ 237 (580)
+|||.|+..|+.++++.|++.++...+..+. .|.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGY 81 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCCC
Confidence 4555555555555555555554433333333 556666666666666666666655544 66777888999999999999
Q ss_pred hHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcc
Q 045393 238 VKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317 (580)
Q Consensus 238 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 317 (580)
.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++++
T Consensus 82 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~- 158 (172)
T 3v30_A 82 TDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENHI- 158 (172)
T ss_dssp HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHHHH-
Confidence 99999999998887 67788899999999999999999999999988 8889999999999999999999999999884
Q ss_pred hhhhcccccCCCCcH
Q 045393 318 MENLINLVDRNGNTP 332 (580)
Q Consensus 318 ~~~~~n~~d~~G~T~ 332 (580)
..+..++..|.||
T Consensus 159 --~~~~~~~~~~~~p 171 (172)
T 3v30_A 159 --LKLFQSNLVPADP 171 (172)
T ss_dssp --HHHSCC-------
T ss_pred --HHHhcccCCCCCC
Confidence 4477777888776
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=5.2e-27 Score=208.71 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=141.4
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 269 (580)
.|.||||.|+..|+.++++.|++.+.. ++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence 578899999999999999999988755 8888999999999999999999999999998887 67788999999999999
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349 (580)
Q Consensus 270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll 349 (580)
|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+..|+.+++++|+
T Consensus 80 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 80 GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESG---ADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 999999999999998 8889999999999999999999999999984 458899999999999999999999999998
Q ss_pred cC
Q 045393 350 RH 351 (580)
Q Consensus 350 ~~ 351 (580)
++
T Consensus 156 ~~ 157 (167)
T 3v31_A 156 SH 157 (167)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=2.6e-27 Score=209.55 Aligned_cols=159 Identities=23% Similarity=0.314 Sum_probs=138.8
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 269 (580)
...+|||.|+..|+.++++.|++.+.. ++..+..|.||||+|+. |+.+++++|++.|+++ +.++..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 466889999999999999999987765 78888999999999988 9999999999998887 67788999999999999
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349 (580)
Q Consensus 270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll 349 (580)
|+.+++++|++++++ ++.+|..|+||||+|++.|+.+++++|++++.. .++.+|..|.||||+|+..|+.+++++|+
T Consensus 81 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 81 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC--CCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999999999988 888999999999999999999999999988543 26888999999999999999999999999
Q ss_pred cCcccc
Q 045393 350 RHKSVN 355 (580)
Q Consensus 350 ~~~~~d 355 (580)
++ |+|
T Consensus 158 ~~-GAd 162 (162)
T 1ihb_A 158 AN-GAG 162 (162)
T ss_dssp HT-C--
T ss_pred Hh-CCC
Confidence 75 554
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1.5e-26 Score=206.13 Aligned_cols=151 Identities=25% Similarity=0.341 Sum_probs=73.6
Q ss_pred HHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHH
Q 045393 4 ELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIA 83 (580)
Q Consensus 4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~A 83 (580)
+|+.|++.|+.+++++|++.+...+..+..|.||||+|+..|+.+++++|+++|.+ ++.+|..|.||||+|
T Consensus 17 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD---------VNAVDHAGMTPLRLA 87 (169)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCccCCCCCCHHHHH
Confidence 44455555555555555554443334444455555555555555555555554444 444444455555555
Q ss_pred HHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHH
Q 045393 84 ARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163 (580)
Q Consensus 84 a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 163 (580)
+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.|||++|
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A 153 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVN-------------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDIS 153 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHH
Confidence 55555555555555444433 234445555555555555555555555544443 2344445555555
Q ss_pred HHcCcHHHHHHHHh
Q 045393 164 IDARLNDIACFIID 177 (580)
Q Consensus 164 ~~~~~~~~v~~Ll~ 177 (580)
+..|+.+++++|++
T Consensus 154 ~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 154 IDNGNEDLAEILQK 167 (169)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhCCHHHHHHHHH
Confidence 55555555554444
No 68
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.7e-27 Score=213.10 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=151.4
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 269 (580)
.+.++|+.|+..|+.++++.|++.++..++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence 67788999999999999999999888778999999999999999999999999999999887 67788999999999999
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349 (580)
Q Consensus 270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll 349 (580)
|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..++.+++++|+
T Consensus 83 ~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 83 GHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999 8999999999999999999999999999984 458999999999999999999999999999
Q ss_pred cCcccccccccc
Q 045393 350 RHKSVNIRAKNH 361 (580)
Q Consensus 350 ~~~~~d~~~~n~ 361 (580)
+. |++++..+.
T Consensus 159 ~~-g~~~~~~~~ 169 (179)
T 3f6q_A 159 KM-GQNLNRIPY 169 (179)
T ss_dssp HT-TCCCSCBCC
T ss_pred Hh-hcCcccCCc
Confidence 75 889887765
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1e-26 Score=207.12 Aligned_cols=156 Identities=24% Similarity=0.338 Sum_probs=143.2
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 269 (580)
.+.++++.|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF 90 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence 677899999999999999999998765 7888999999999999999999999999999887 67788999999999999
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349 (580)
Q Consensus 270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll 349 (580)
|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+..|+.+++++|+
T Consensus 91 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 91 GHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG---ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 999999999999999 8899999999999999999999999999984 458999999999999999999999999998
Q ss_pred cC
Q 045393 350 RH 351 (580)
Q Consensus 350 ~~ 351 (580)
+.
T Consensus 167 ~~ 168 (169)
T 2y1l_E 167 KL 168 (169)
T ss_dssp TC
T ss_pred Hc
Confidence 64
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.4e-29 Score=236.99 Aligned_cols=207 Identities=17% Similarity=0.121 Sum_probs=151.0
Q ss_pred HHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHH
Q 045393 92 VSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDI 171 (580)
Q Consensus 92 v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~ 171 (580)
++.|+++|++++... ..+.+|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.++
T Consensus 1 v~~ll~~~~~~~~~~----------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~ 69 (229)
T 2vge_A 1 MRSVLRKAGSPRKAR----------RARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSI 69 (229)
T ss_dssp ---------CCCCCC----------CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHH
T ss_pred CeehhccCCCCcccc----------ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHH
Confidence 356677776654321 245567778888888888888888888877665 356666666666666666666
Q ss_pred HHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhc
Q 045393 172 ACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRL 251 (580)
Q Consensus 172 v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 251 (580)
+++|++.+ .+ ++..|..|+||||+|+..|+.+++++|++.|+++
T Consensus 70 v~~Ll~~g-----------------------------------a~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 113 (229)
T 2vge_A 70 VDFLITAG-----------------------------------AN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113 (229)
T ss_dssp HHHHHHTT-----------------------------------CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred HHHHHHCC-----------------------------------CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 66666554 22 5666778899999999999999999999999888
Q ss_pred ccccCCCCCcHHHHH--HHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCC
Q 045393 252 AYKRDCNGETPLHLA--AENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNG 329 (580)
Q Consensus 252 ~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G 329 (580)
....+..|.||||+| +..|+.+++++|+++|++ ++.+|..|.|+++.++..+.. ++|++.+. ..+++.+|.+|
T Consensus 114 ~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga-~~~~~~~d~~G 188 (229)
T 2vge_A 114 FATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD---ELSFREGE-SVTVLRRDGPE 188 (229)
T ss_dssp TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BCCBCTTC-EEEEEESSCTT
T ss_pred ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---ccCccccc-cccccccCCCc
Confidence 444446899999999 899999999999999998 888899999999865554433 56777643 23478899999
Q ss_pred CcHHHHHHhcCChhHHHHhhc
Q 045393 330 NTPLHLAAMGLHSDVVFTLSR 350 (580)
Q Consensus 330 ~T~Lh~A~~~~~~~~~~~Ll~ 350 (580)
+||||+|+..|+.++++.++-
T Consensus 189 ~TpL~~A~~~g~~~~v~~~~l 209 (229)
T 2vge_A 189 ETDWWWAALHGQEGYVPRNYF 209 (229)
T ss_dssp CSSEEEEEETTEEEEEEGGGE
T ss_pred ccHHHHHHHcCCcceeehhhh
Confidence 999999999999999986543
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1e-26 Score=204.29 Aligned_cols=154 Identities=25% Similarity=0.328 Sum_probs=142.1
Q ss_pred CccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcC
Q 045393 191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENG 270 (580)
Q Consensus 191 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 270 (580)
+.++||.|+..|+.++++.|++..+..++..+..|.||||+ +..|+.+++++|++.|+++ +.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 46899999999999999999988555688899999999999 9999999999999999887 778899999999999999
Q ss_pred cHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393 271 KLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350 (580)
Q Consensus 271 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~ 350 (580)
+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++. .+++.+|.+|.||||+|+..|+.+++++|++
T Consensus 80 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc----cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 99999999999998 899999999999999999999999999987 3489999999999999999999999999986
Q ss_pred C
Q 045393 351 H 351 (580)
Q Consensus 351 ~ 351 (580)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 4
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=4e-26 Score=199.73 Aligned_cols=150 Identities=27% Similarity=0.359 Sum_probs=126.8
Q ss_pred CHHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393 2 DQELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH 81 (580)
Q Consensus 2 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh 81 (580)
.++|+.|++.|+.+++++|++.+.... .+..|.||||+|+..|+.+++++|++.|.+ ++.+|..|.||||
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~ 72 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---------RDARTKVDRTPLH 72 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---------TTCCCTTCCCHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCCCCCCCCCHHH
Confidence 367888999999999999988876544 577888999999999999999999988887 7788888889999
Q ss_pred HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393 82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (580)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 161 (580)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||+
T Consensus 73 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~ 138 (153)
T 1awc_B 73 MAASEGHANIVEVLLKHGADVN-------------AKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFD 138 (153)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHH
Confidence 9999999999999998888765 467888899999999889999999998888776 46788888888
Q ss_pred HHHHcCcHHHHHHH
Q 045393 162 IAIDARLNDIACFI 175 (580)
Q Consensus 162 ~A~~~~~~~~v~~L 175 (580)
+|+..|+.+++++|
T Consensus 139 ~A~~~~~~~i~~~L 152 (153)
T 1awc_B 139 ISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 88888888888876
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=9.9e-27 Score=209.41 Aligned_cols=164 Identities=24% Similarity=0.296 Sum_probs=149.4
Q ss_pred CCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHH
Q 045393 223 WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK 302 (580)
Q Consensus 223 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 302 (580)
.++.++||.|+..|+.+++++|++.+....+.++..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 35789999999999999999999997666688899999999999999999999999999999 89999999999999999
Q ss_pred cCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhh
Q 045393 303 HGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEI 382 (580)
Q Consensus 303 ~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~ 382 (580)
.|+.+++++|++++ .++|.+|..|+||||+|+..++.+++++|+++ |++++.+|. .|+||+++|.. .
T Consensus 82 ~~~~~~v~~Ll~~g---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~A~~-------~ 148 (179)
T 3f6q_A 82 HGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNK--YGEMPVDKAKA-------P 148 (179)
T ss_dssp TTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCT--TSCCGGGGSCH-------H
T ss_pred cCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhcc--CCCCcHHHHHH-------H
Confidence 99999999999994 55999999999999999999999999999976 999999999 99999999987 5
Q ss_pred HHHHHHHHHHHhhhhhhc
Q 045393 383 QKHLTLKALKTAYAKRAL 400 (580)
Q Consensus 383 ~~~~~~~~L~~~ga~~~~ 400 (580)
.+.++.+.|++.|++...
T Consensus 149 ~~~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 149 LRELLRERAEKMGQNLNR 166 (179)
T ss_dssp HHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHhhcCccc
Confidence 677899999999988643
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=2.1e-26 Score=201.56 Aligned_cols=150 Identities=19% Similarity=0.288 Sum_probs=123.5
Q ss_pred ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCc
Q 045393 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGK 271 (580)
Q Consensus 192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 271 (580)
.++|+.|+..|+.++++.|++.+.. .+ .+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCh
Confidence 4678888888888888888877764 33 4777888888888888888888888888776 6677788888888888888
Q ss_pred HHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHh
Q 045393 272 LKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348 (580)
Q Consensus 272 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~L 348 (580)
.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++++ .+++.+|..|+||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYG---ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 8888888888888 7888888888888888888888888888884 44788888888888888888888888776
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=2.6e-27 Score=210.18 Aligned_cols=156 Identities=23% Similarity=0.307 Sum_probs=105.2
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 269 (580)
.+.++||.|+..|+.++++.|++..+...+..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence 55667777777777777777776665556666666667777777777777777777766665 55566677777777777
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhh
Q 045393 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349 (580)
Q Consensus 270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll 349 (580)
|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++++ .+++.+|.+|+||||+|.. ++.+++++|+
T Consensus 86 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 86 GHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHG---ADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 777777777776666 6666666777777777777777777777663 3366666777777776554 6666666666
Q ss_pred cC
Q 045393 350 RH 351 (580)
Q Consensus 350 ~~ 351 (580)
++
T Consensus 161 ~~ 162 (165)
T 3twr_A 161 GD 162 (165)
T ss_dssp TC
T ss_pred hc
Confidence 43
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=9.6e-27 Score=206.51 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=116.3
Q ss_pred cccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHH
Q 045393 152 INKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231 (580)
Q Consensus 152 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~ 231 (580)
.+..+.+||+.|+..|+.++++.|++..+......+. .|.||||.|+..++.+++++|++.+.+ ++..|..|.||||+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHN 81 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc-CCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHH
Confidence 3566677777777777777777777766555544444 677777777777777777777777655 67777777777777
Q ss_pred HHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHH
Q 045393 232 AAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSF 311 (580)
Q Consensus 232 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~ 311 (580)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+. ++.+++++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred HHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHH
Confidence 77777777777777777776 56677777777777777777777777777777 67777777777777655 77777777
Q ss_pred HhcCc
Q 045393 312 ILRSP 316 (580)
Q Consensus 312 Ll~~~ 316 (580)
|++.|
T Consensus 159 L~~~g 163 (165)
T 3twr_A 159 LRGDA 163 (165)
T ss_dssp HHTC-
T ss_pred Hhhcc
Confidence 77664
No 77
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.2e-29 Score=235.78 Aligned_cols=142 Identities=19% Similarity=0.139 Sum_probs=107.3
Q ss_pred HHHHhhhcCcc---cccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHH
Q 045393 17 IKQLALRQDIF---STSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVS 93 (580)
Q Consensus 17 ~~~ll~~~~~~---~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~ 93 (580)
++.|++++... ...+.++.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.++++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---------~~~~d~~g~tpLh~A~~~g~~~~v~ 71 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND---------PSQPNEEGITALHNAICGANYSIVD 71 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC---------TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC---------CCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 35566665332 23445667788888888888888888888887 7788888888888888888888888
Q ss_pred HHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHH--HHcCcHHH
Q 045393 94 EIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA--IDARLNDI 171 (580)
Q Consensus 94 ~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~~~~~~ 171 (580)
+|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+| +..|+.++
T Consensus 72 ~Ll~~ga~~n-------------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~ 138 (229)
T 2vge_A 72 FLITAGANVN-------------SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADC 138 (229)
T ss_dssp HHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHH
T ss_pred HHHHCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHH
Confidence 8888888765 46778888888888888888888888888888755556888888888 77888888
Q ss_pred HHHHHhcCC
Q 045393 172 ACFIIDKSP 180 (580)
Q Consensus 172 v~~Ll~~~~ 180 (580)
+++|++.+.
T Consensus 139 v~~Ll~~ga 147 (229)
T 2vge_A 139 ATYLADVEQ 147 (229)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHcCC
Confidence 888887764
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.2e-25 Score=195.75 Aligned_cols=151 Identities=22% Similarity=0.268 Sum_probs=119.4
Q ss_pred HHHHHHHHcCCHHHHHHHhhhc-CcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393 3 QELLEVLRHGDEYKIKQLALRQ-DIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH 81 (580)
Q Consensus 3 ~~L~~A~~~g~~~~~~~ll~~~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh 81 (580)
++|+.|++.|+.+.+++|++.. ...+..+..|.||||+ +..|+.+++++|++.|.+ ++.+|..|.||||
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~ 73 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS---------PNVQDTSGTSPVH 73 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC---------TTCCCTTSCCHHH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC---------CCCcCCCCCCHHH
Confidence 5788888888888888888772 2455577778888888 888888888888888877 7777888888888
Q ss_pred HHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHH
Q 045393 82 IAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (580)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 161 (580)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++. ++++ ..+..|.|||+
T Consensus 74 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t~l~ 138 (156)
T 1bd8_A 74 DAARTGFLDTLKVLVEHGADVN-------------VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLTPLE 138 (156)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCCHHH
T ss_pred HHHHcCcHHHHHHHHHcCCCCC-------------CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCCHHH
Confidence 8888888888888888887765 4677788888888888888888888887 5554 56778888888
Q ss_pred HHHHcCcHHHHHHHHhc
Q 045393 162 IAIDARLNDIACFIIDK 178 (580)
Q Consensus 162 ~A~~~~~~~~v~~Ll~~ 178 (580)
+|+..|+.+++++|+++
T Consensus 139 ~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 139 LALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHSCCHHHHHHHHTT
T ss_pred HHHHcCcHHHHHHHHhh
Confidence 88888888888888764
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=5.7e-26 Score=214.51 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=111.6
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 269 (580)
.|.||||.|+..++.+.++.|++++.+ ++. +..|.||||.|+..|+.++++.|++.|+++ +.+|..|.||||+|+..
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence 566777777777777777777766654 332 356778888888888888888888888766 67788888888888888
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCC-cHHHHH--HhcCChhHHH
Q 045393 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGN-TPLHLA--AMGLHSDVVF 346 (580)
Q Consensus 270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~-T~Lh~A--~~~~~~~~~~ 346 (580)
|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++++ ++++.+|..|. ||||+| +..|+.++++
T Consensus 81 g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESG---AAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence 888888888888888 7888888888888888888888888888874 44788887776 888888 6778888888
Q ss_pred HhhcCcccccccccc-------cCCCCCHHHHHH
Q 045393 347 TLSRHKSVNIRAKNH-------SARSNTALEIAE 373 (580)
Q Consensus 347 ~Ll~~~~~d~~~~n~-------~~~g~t~l~~a~ 373 (580)
+|+.. |++++..|. +..+.+|++++.
T Consensus 157 ~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~ 189 (239)
T 1ycs_B 157 FLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPM 189 (239)
T ss_dssp HHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred HHHHh-hhcccccccceEEEEeccCCCCCCcccc
Confidence 88864 777776543 115666665543
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=1.1e-25 Score=212.45 Aligned_cols=207 Identities=17% Similarity=0.194 Sum_probs=139.6
Q ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHc
Q 045393 156 YQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS 235 (580)
Q Consensus 156 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~ 235 (580)
|.||||.|+..++.+.++.|++++.. .+.. +.+.||||.|+..|+.++++.|++.+.+ ++..|..|.||||+|+..
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMR-VKFN--PLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHH
T ss_pred ccccCchhhhhhhHHHHHHHhccCCC-cccC--chhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 44444444444444444444444422 1111 1567777777777777777777777664 788889999999999999
Q ss_pred CChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCC-CHHHHH--HHcCCHHHHHHH
Q 045393 236 GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDR-SILHVA--AKHGNWNIVSFI 312 (580)
Q Consensus 236 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~iv~~L 312 (580)
|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+| +..|+.+++++|
T Consensus 81 g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L 158 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158 (239)
T ss_dssp TCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred CCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence 9999999999999887 77889999999999999999999999999999 788887776 999999 888999999999
Q ss_pred hcCcchhhhcc------cccCCCCcHHHHHHhcCChhHHHHhhcCcccc------cccccccCCCCCHHHHHH
Q 045393 313 LRSPEMENLIN------LVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN------IRAKNHSARSNTALEIAE 373 (580)
Q Consensus 313 l~~~~~~~~~n------~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d------~~~~n~~~~g~t~l~~a~ 373 (580)
++.+......+ ..|..|.++++++...|. +++.|.+. +.+ ....+. .|.+|..+..
T Consensus 159 l~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~-~~~~~~Ww~~~~~~~--~G~~P~~yv~ 226 (239)
T 1ycs_B 159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRE-DEDEIEWWWARLNDK--EGYVPRNLLG 226 (239)
T ss_dssp HHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCC-TTSCSSEEEEEETTE--EEEEEGGGEE
T ss_pred HHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEec-CCCCCCEEEEEECCc--EEEeehHHee
Confidence 99854422222 227789999999988886 44444432 222 234455 7888877654
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=3.1e-25 Score=194.71 Aligned_cols=147 Identities=23% Similarity=0.234 Sum_probs=113.6
Q ss_pred ccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCC-H
Q 045393 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRS-I 296 (580)
Q Consensus 218 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~ 296 (580)
....+..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+ .|+.+++++|+++|++ ++.+|..|+| |
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttp 81 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRP 81 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCH
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHH
Confidence 3455778899999999999999999999998887 677889999999985 8999999999999988 8999999999 9
Q ss_pred HHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHH
Q 045393 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAE 373 (580)
Q Consensus 297 Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~ 373 (580)
||+|+..|+.+++++|+++ +++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|. .|.||.+-+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~~~~~~ 152 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNH--ARIDAAEGPS 152 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C--------------------
T ss_pred HHHHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCc--CcCcccccCC
Confidence 9999999999999999988 455899999999999999999999999999965 999999999 9999887543
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=8.7e-25 Score=186.99 Aligned_cols=133 Identities=23% Similarity=0.254 Sum_probs=121.3
Q ss_pred ccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC-CC
Q 045393 216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNS-DR 294 (580)
Q Consensus 216 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~ 294 (580)
..++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+. |+.+++++|++++++ ++.+|.. |+
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~ 79 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLT 79 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTB
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence 347788999999999999999999999999999887 6778899999999999 999999999999999 8899999 99
Q ss_pred CHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc
Q 045393 295 SILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355 (580)
Q Consensus 295 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d 355 (580)
||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+..++.+++++|+++ |+|
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad 136 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAG---ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTC---CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 9999999999999999999984 45899999999999999999999999999964 554
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=4.7e-25 Score=198.70 Aligned_cols=161 Identities=15% Similarity=0.133 Sum_probs=121.8
Q ss_pred CccHHHHHHHcCCHHHHHHHHhhCCccccccC-CCCChHHHHHHHcCCh----HHHHHHHHhchhcccccCCCCCcHHHH
Q 045393 191 ELTLIHFVVMRQNYDIMVKILGTNKELIDRLD-WHQRNPLHYAAASGNV----KMAQRLLEESKRLAYKRDCNGETPLHL 265 (580)
Q Consensus 191 ~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 265 (580)
++++|+.|+..|+.+.++.++..+.. ..+ ..|+||||+|+..|+. +++++|+++|+++ +.+|..|.||||+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~ 81 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFP 81 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence 45677888888888887777776533 333 5688888888888864 4788888888887 6777888888888
Q ss_pred HHHcCc------HHHHHHHHHhCCCccccccCCCC-CHHHHHHHcCC-----HHHHHHHhc-CcchhhhcccccCCCCcH
Q 045393 266 AAENGK------LKVLKLLINKYPDAIEIRNNSDR-SILHVAAKHGN-----WNIVSFILR-SPEMENLINLVDRNGNTP 332 (580)
Q Consensus 266 A~~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~iv~~Ll~-~~~~~~~~n~~d~~G~T~ 332 (580)
|+..|+ .+++++|+++|++ ++.+|..|+ ||||+|+..+. .+++++|++ + ++++|.+|..|.||
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~---gad~~~~d~~G~Tp 157 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS---GLQLLIKDKWGLTA 157 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST---TCCTTCCCTTSCCH
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc---CCCCcccCCCCCCH
Confidence 888776 5778888888888 788888888 88888888443 458888887 6 44588888888888
Q ss_pred HHHHHhcCChhHHHHhhcCccccccccc
Q 045393 333 LHLAAMGLHSDVVFTLSRHKSVNIRAKN 360 (580)
Q Consensus 333 Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n 360 (580)
||+|+..++.+++++|+.. ..+.+.++
T Consensus 158 L~~A~~~~~~~~v~~L~~~-~~~~~~~~ 184 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDY-IKKYNLKE 184 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred HHHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence 8888888888888887754 33444443
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=9.7e-25 Score=196.66 Aligned_cols=159 Identities=18% Similarity=0.130 Sum_probs=137.1
Q ss_pred CChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcH----HHHHHHHHhCCCccccccCCCCCHHHHH
Q 045393 225 QRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKL----KVLKLLINKYPDAIEIRNNSDRSILHVA 300 (580)
Q Consensus 225 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 300 (580)
+.++|+.|++.|+.+.++.+++.+.+. ..+..|.||||+|+.+|+. +++++|+++|++ ++.+|..|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence 457899999999999999999877432 2236799999999999975 599999999999 899999999999999
Q ss_pred HHcCC------HHHHHHHhcCcchhhhcccccCCCC-cHHHHHHhcCC-----hhHHHHhhcCcccccccccccCCCCCH
Q 045393 301 AKHGN------WNIVSFILRSPEMENLINLVDRNGN-TPLHLAAMGLH-----SDVVFTLSRHKSVNIRAKNHSARSNTA 368 (580)
Q Consensus 301 ~~~~~------~~iv~~Ll~~~~~~~~~n~~d~~G~-T~Lh~A~~~~~-----~~~~~~Ll~~~~~d~~~~n~~~~g~t~ 368 (580)
+..++ .+++++|+++ ++++|.+|..|+ ||||+|+..+. .+++++|+...|+|++.+|. .|+||
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~---Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~--~G~Tp 157 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEK---GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK--WGLTA 157 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT---TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT--TSCCH
T ss_pred HHcCCcchhhHHHHHHHHHHC---CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC--CCCCH
Confidence 99987 5789999999 555999999999 99999999554 45889999757999999999 99999
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHhhhhh
Q 045393 369 LEIAEITRANGKEIQKHLTLKALKTAYAKR 398 (580)
Q Consensus 369 l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~ 398 (580)
|++|.. .++.++++.|.++..+.
T Consensus 158 L~~A~~-------~~~~~~v~~L~~~~~~~ 180 (186)
T 3t8k_A 158 LEFVKR-------CQKPIALKMMEDYIKKY 180 (186)
T ss_dssp HHHHHT-------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHH-------cCCHHHHHHHHHHHHHH
Confidence 999987 45667888888766543
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=1.1e-23 Score=180.17 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=118.2
Q ss_pred ccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCC
Q 045393 27 FSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVG 106 (580)
Q Consensus 27 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~ 106 (580)
.+..+..|.||||+|+..|+.+++++|+++|.+ ++.+|..|.||||+|+. |+.+++++|+++|++++
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~--- 71 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD---------PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN--- 71 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS---
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC---------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC---
Confidence 445788899999999999999999999999988 88889999999999999 99999999999998876
Q ss_pred CcchhhhhhhccCCC-CCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 045393 107 PAPVLESLFRMTDIE-GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP 180 (580)
Q Consensus 107 ~~~~~~~~l~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 180 (580)
.+|.. |.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++++
T Consensus 72 ----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 72 ----------CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp ----------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred ----------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 47778 9999999999999999999999999876 578899999999999999999999998874
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=2.3e-23 Score=182.73 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=114.8
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCc-HHHHHHH
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGET-PLHLAAE 268 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~ 268 (580)
.|.||||.|+..|+.+++++|++.+.. ++..|..|.||||+|+ .|+.+++++|+++|+++ +.++..|.| |||+|+.
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~~ 87 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAR 87 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHH
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHH
Confidence 788999999999999999999988665 8888999999999985 89999999999999887 778899999 9999999
Q ss_pred cCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHH
Q 045393 269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336 (580)
Q Consensus 269 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A 336 (580)
.|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||.+-+
T Consensus 88 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 88 EGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAA---GGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred CCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcC---CCCCccCcCcCcccccC
Confidence 9999999999999999 8999999999999999999999999999994 45999999999998744
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=8.9e-23 Score=171.79 Aligned_cols=126 Identities=40% Similarity=0.637 Sum_probs=112.9
Q ss_pred CCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHc
Q 045393 224 HQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKH 303 (580)
Q Consensus 224 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 303 (580)
+|+||||.|+..|+.+++++|++++.++ +..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence 4889999999999999999999998877 66788899999999999999999999999988 888899999999999999
Q ss_pred CCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccc
Q 045393 304 GNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355 (580)
Q Consensus 304 ~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d 355 (580)
++.+++++|++++ .+++.+|..|+||||+|+..++.+++++|+++ |+|
T Consensus 79 ~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY 126 (126)
T ss_dssp TCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred ChHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence 9999999999984 45888999999999999999999999999865 553
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=4.7e-23 Score=176.14 Aligned_cols=126 Identities=23% Similarity=0.300 Sum_probs=110.2
Q ss_pred cCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHH
Q 045393 221 LDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVA 300 (580)
Q Consensus 221 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 300 (580)
....+.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLA 87 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHH
Confidence 3456788999999999999999999998887 67788899999999999999999999999888 888899999999999
Q ss_pred HHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393 301 AKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (580)
Q Consensus 301 ~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~ 351 (580)
+..|+.+++++|++++ .+++.+|.+|+||||+|+..++.+++++|++.
T Consensus 88 ~~~~~~~~v~~Ll~~g---~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHG---ADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHcC---CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 9999999999999884 45888999999999999999999999998864
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=6.9e-23 Score=175.13 Aligned_cols=127 Identities=23% Similarity=0.218 Sum_probs=115.0
Q ss_pred cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393 30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP 109 (580)
Q Consensus 30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 109 (580)
....+.||||+|+..|+.+++++|+++|.+ ++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------ 74 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGAD---------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN------ 74 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCC---------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------
Confidence 445688999999999999999999999988 88899999999999999999999999999998865
Q ss_pred hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcC
Q 045393 110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKS 179 (580)
Q Consensus 110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 179 (580)
.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.|||++|+..|+.+++++|+++|
T Consensus 75 -------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 75 -------AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp -------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred -------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 478899999999999999999999999999876 57889999999999999999999999864
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=3.1e-22 Score=168.44 Aligned_cols=125 Identities=28% Similarity=0.404 Sum_probs=116.3
Q ss_pred CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhh
Q 045393 33 GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE 112 (580)
Q Consensus 33 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 112 (580)
+|.||||+|+..|+.+++++|++.|.+ ++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--------- 62 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD---------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN--------- 62 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC---------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc---------
Confidence 589999999999999999999999988 78889999999999999999999999999998865
Q ss_pred hhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCC
Q 045393 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSP 180 (580)
Q Consensus 113 ~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 180 (580)
.+|..|.||||+|+..++.+++++|+++|++++ ..+..|.|||++|+..++.+++++|+++++
T Consensus 63 ----~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 63 ----AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp ----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred ----ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 478899999999999999999999999999876 578899999999999999999999999875
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=9.8e-23 Score=174.43 Aligned_cols=127 Identities=26% Similarity=0.348 Sum_probs=109.2
Q ss_pred ccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHH
Q 045393 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHV 299 (580)
Q Consensus 220 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 299 (580)
.+|.+|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence 56788999999999999999999999998877 67788899999999999999999999999888 88889999999999
Q ss_pred HHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393 300 AAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (580)
Q Consensus 300 A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~ 351 (580)
|+..|+.+++++|++. +++++.+|..|.||||+|+..+..+++++|.+.
T Consensus 83 A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 9999999999999988 445888999999999999888887777766543
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=1.2e-22 Score=173.87 Aligned_cols=126 Identities=24% Similarity=0.323 Sum_probs=113.0
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHH
Q 045393 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPL 333 (580)
Q Consensus 254 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~L 333 (580)
.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++ +.+++.+|..|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQH---KALVNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCcccCcCCCCCCHH
Confidence 5688999999999999999999999999999 899999999999999999999999999998 445999999999999
Q ss_pred HHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChhhHHHHHHHHHHH
Q 045393 334 HLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKEIQKHLTLKALKT 393 (580)
Q Consensus 334 h~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~ 393 (580)
|+|+..++.+++++|+++ |++++.+|. .|+||+++|.. ....+++++|.+
T Consensus 81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~A~~-------~~~~~~l~~l~~ 130 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSY-GASRNAVNI--FGLRPVDYTDD-------ESMKSLLLLPEK 130 (137)
T ss_dssp HHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCGGGGCCC-------HHHHHHHSCC--
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCCCCCC--CCCCHHHHHhh-------ccHHHHHhhccc
Confidence 999999999999999976 999999999 99999999976 344555555444
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=2.1e-23 Score=188.26 Aligned_cols=140 Identities=18% Similarity=0.121 Sum_probs=117.3
Q ss_pred CCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcch
Q 045393 31 SPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPV 110 (580)
Q Consensus 31 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~ 110 (580)
+.+|.||||+|+..|+.+++++|++ +.+ ++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------ 104 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD---------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH------ 104 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC---------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC---------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------
Confidence 4578899999999999999999999 776 788899999999999999999999999999988753
Q ss_pred hhhhhhccC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCC
Q 045393 111 LESLFRMTD-IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLP 189 (580)
Q Consensus 111 ~~~~l~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 189 (580)
+| ..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..++. .
T Consensus 105 -------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~------------------~- 157 (183)
T 3deo_A 105 -------RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------T- 157 (183)
T ss_dssp -------CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT------------------C-
T ss_pred -------CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC------------------c-
Confidence 45 789999999999999999999999998877 5788999999999764322 1
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhh
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGT 213 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~ 213 (580)
.+.++|+.|+..|..++++.|.++
T Consensus 158 ~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 158 PKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHcCHHHHHHHHHHh
Confidence 566888888888888888777653
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=188.90 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=108.2
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccc------cCCCCChHHHHHHHc---CChHHHHHHHHhchhcccccCCCCC
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDR------LDWHQRNPLHYAAAS---GNVKMAQRLLEESKRLAYKRDCNGE 260 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~------~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~ 260 (580)
...++|+.|+..++.+.++.+++.+.+ ++. .+..|.||||+|+.. ++.+++++|+++|+++ +.+|..|.
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~ 227 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 227 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence 455778888888888888888877765 554 577888888888886 7888888888888877 66788888
Q ss_pred cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcC
Q 045393 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGL 340 (580)
Q Consensus 261 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~ 340 (580)
||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.+.. .|.||||+|+.+|
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~g 297 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSWV 297 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhcC
Confidence 888888888888888888888888 788888888888888888888888888876432 5788888888877
Q ss_pred C
Q 045393 341 H 341 (580)
Q Consensus 341 ~ 341 (580)
+
T Consensus 298 ~ 298 (301)
T 2b0o_E 298 I 298 (301)
T ss_dssp -
T ss_pred C
Confidence 5
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=1.1e-22 Score=192.43 Aligned_cols=171 Identities=15% Similarity=0.090 Sum_probs=121.3
Q ss_pred CCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchh
Q 045393 32 PGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVL 111 (580)
Q Consensus 32 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 111 (580)
..+.+++..++..|+.+.++.+...+.+ .+..|.||||.|++.|+.++++.|++ +.+++
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~------------~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-------- 71 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD------------VVSEYETPWWTAARKADEQALSQLLE-DRDVD-------- 71 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSCHH------------HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT--------
T ss_pred CCCccHHHHHHHcCCCcccccccccccc------------cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC--------
Confidence 3456677777777777666655544443 45678899999999999999999998 77655
Q ss_pred hhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCC
Q 045393 112 ESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDE 191 (580)
Q Consensus 112 ~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 191 (580)
.+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|++++. +++..+. .|
T Consensus 72 -----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d~-~g 144 (244)
T 3ui2_A 72 -----AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDE-RG 144 (244)
T ss_dssp -----CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCT-TC
T ss_pred -----CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCC-CC
Confidence 4788899999999999999999999999988875544778888888888888888888888763 3344444 66
Q ss_pred ccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhc
Q 045393 192 LTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES 248 (580)
Q Consensus 192 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~ 248 (580)
.||||.|+..++ ...+.||||+|+..|+.+++++|++.+
T Consensus 145 ~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 145 LTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp CCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 666666653211 123455555555555555555555543
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=7.6e-22 Score=165.39 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=64.5
Q ss_pred CCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHH
Q 045393 223 WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAK 302 (580)
Q Consensus 223 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 302 (580)
..|.||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHH
Confidence 34556666666666666666666665554 44555566666666666666666666666655 55566666666666666
Q ss_pred cCCHHHHHHHhcCcchhhhcccccCCCCcHHHHH
Q 045393 303 HGNWNIVSFILRSPEMENLINLVDRNGNTPLHLA 336 (580)
Q Consensus 303 ~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A 336 (580)
.++.+++++|++++ .+++.+|.+|.||||+|
T Consensus 83 ~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 83 EGHVSCVKLLLSKG---ADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHC
T ss_pred cCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHh
Confidence 66666666666652 33555666666666665
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=1.6e-21 Score=184.37 Aligned_cols=142 Identities=23% Similarity=0.253 Sum_probs=116.9
Q ss_pred CCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc-CCCCCHHHHHH
Q 045393 223 WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRN-NSDRSILHVAA 301 (580)
Q Consensus 223 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~ 301 (580)
..|.||||.|+..|+.++++.|++ ++++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+| ..|+||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHH
Confidence 467889999999999999999998 7666 67788899999999999999999999999888 67777 77999999999
Q ss_pred HcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHHHHHHhhCChh
Q 045393 302 KHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEIAEITRANGKE 381 (580)
Q Consensus 302 ~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~a~~~~~~~~~ 381 (580)
.+|+.+++++|+++ +++++.+|..|+||||+|+..++ +. .+.|||++|..
T Consensus 120 ~~g~~~~v~~Ll~~---ga~~~~~d~~g~t~l~~A~~~~~------------------~~--~~~~~l~~a~~------- 169 (244)
T 3ui2_A 120 GYVRPEVVEALVEL---GADIEVEDERGLTALELAREILK------------------TT--PKGNPMQFGRR------- 169 (244)
T ss_dssp HTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHHT------------------TC--CCSSHHHHHHH-------
T ss_pred HcCCHHHHHHHHHC---CCCCCCCCCCCCcHHHHHHHHHh------------------cc--CCCCHHHHHHH-------
Confidence 99999999999988 44588889999999999986322 13 78899999887
Q ss_pred hHHHHHHHHHHHhhhh
Q 045393 382 IQKHLTLKALKTAYAK 397 (580)
Q Consensus 382 ~~~~~~~~~L~~~ga~ 397 (580)
....++++.|.+.+.+
T Consensus 170 ~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 170 IGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHHHHEE
T ss_pred cChHHHHHHHHHhccc
Confidence 5667788888877654
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.8e-21 Score=163.13 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=102.1
Q ss_pred cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcc
Q 045393 30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAP 109 (580)
Q Consensus 30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~ 109 (580)
.+..|.||||+|+..|+.+++++|++.|.+ ++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------ 67 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGED---------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN------ 67 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCC---------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT------
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCC---------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC------
Confidence 356788999999999999999999999988 88899999999999999999999999999998865
Q ss_pred hhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCc
Q 045393 110 VLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARL 168 (580)
Q Consensus 110 ~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~ 168 (580)
.+|..|.||||+|+..++.+++++|+++|++++ ..|..|.||+++|...+.
T Consensus 68 -------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 68 -------APDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQAI 118 (123)
T ss_dssp -------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCCHHH
T ss_pred -------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCCHHH
Confidence 478899999999999999999999999999876 578999999999944333
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=4e-22 Score=185.93 Aligned_cols=136 Identities=21% Similarity=0.250 Sum_probs=113.4
Q ss_pred ccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHh-CCCccccccCCCCCHHH
Q 045393 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINK-YPDAIEIRNNSDRSILH 298 (580)
Q Consensus 220 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh 298 (580)
..+..|.||||+|+..|+.++++.|++.|+++ +.+|..|.||||+|+..|+.+++++|+++ +++ ++.+|..|+||||
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALH 145 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHH
Confidence 34667899999999999999999999999887 67889999999999999999999999998 777 8999999999999
Q ss_pred HHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccc
Q 045393 299 VAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNH 361 (580)
Q Consensus 299 ~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~ 361 (580)
+|+..|+.+++++|+++ +++++.+|.+|.||||+|+..++.++++.|+.. +++.+.+|.
T Consensus 146 ~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~ 204 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNA 204 (222)
T ss_dssp HHHHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred HHHHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccch
Confidence 99999999999999998 455899999999999999999999999999865 777777766
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=3.8e-21 Score=173.37 Aligned_cols=138 Identities=22% Similarity=0.241 Sum_probs=118.6
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccC-CCCCcHHHHHHH
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRD-CNGETPLHLAAE 268 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A~~ 268 (580)
.|.||||.|+..|+.++++.|++ + ..++..|..|+||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+.
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-T-SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-c-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHh
Confidence 67788888888888888888888 4 348888999999999999999999999999999888 4445 889999999999
Q ss_pred cCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHh
Q 045393 269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348 (580)
Q Consensus 269 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~L 348 (580)
.|+.+++++|+++|++ ++.+|..|+||||+|++.++. ..+.+||++|+..|+.++++.|
T Consensus 120 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 120 YVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp TTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHcCHHHHHHHH
Confidence 9999999999999998 889999999999999874322 3568999999999999999988
Q ss_pred hcC
Q 045393 349 SRH 351 (580)
Q Consensus 349 l~~ 351 (580)
.++
T Consensus 179 ~~~ 181 (183)
T 3deo_A 179 EGQ 181 (183)
T ss_dssp HTC
T ss_pred HHh
Confidence 753
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=188.72 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=114.4
Q ss_pred cCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHh---CCHHHHHHHHhcCcccccCC
Q 045393 30 SSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARI---GDRAIVSEIMKYLPAVNQVG 106 (580)
Q Consensus 30 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~ 106 (580)
......++|+.|+..|+.+.++.|++.|++++.... ....+..|.||||+|+.. |+.+++++|+++|++++
T Consensus 147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~---~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn--- 220 (301)
T 2b0o_E 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP---GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD--- 220 (301)
T ss_dssp CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE---CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT---
T ss_pred ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCC---CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC---
Confidence 344567889999999999999999988877432210 112577888999999987 88999999999988865
Q ss_pred CcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCC
Q 045393 107 PAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTT 186 (580)
Q Consensus 107 ~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~ 186 (580)
.+|.+|.||||+|+..|+.+++++|+++|++++ ..|..|.|||++|+..++.+++++|+++++.
T Consensus 221 ----------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----- 284 (301)
T 2b0o_E 221 ----------AKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG----- 284 (301)
T ss_dssp ----------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----
T ss_pred ----------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----
Confidence 477889999999999999999999999988876 5788899999999999999999999988754
Q ss_pred CCCCCccHHHHHHHcCCH
Q 045393 187 RLPDELTLIHFVVMRQNY 204 (580)
Q Consensus 187 ~~~~~~t~L~~A~~~~~~ 204 (580)
.|.||||.|+..|+.
T Consensus 285 ---~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 285 ---TFAFPLHVDYSWVIS 299 (301)
T ss_dssp ---TTSSCCC--------
T ss_pred ---CCCChhHHHHhcCCc
Confidence 567889999887753
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=2.7e-20 Score=179.15 Aligned_cols=122 Identities=20% Similarity=0.288 Sum_probs=98.4
Q ss_pred ChHHHHHHHcCChHHHHHHHHhchhcc-----cccCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccccCCCCCHH
Q 045393 226 RNPLHYAAASGNVKMAQRLLEESKRLA-----YKRDCNGETPLHLAAEN---GKLKVLKLLINKYPDAIEIRNNSDRSIL 297 (580)
Q Consensus 226 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 297 (580)
.++|+.|+..|+.+.++.+++.|.+.. +..+..|.||||+|+.. |+.+++++|+++|++ ++.+|..|+|||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpL 209 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHH
Confidence 357888888888888888888877642 23367788888888888 788888888888888 788888888888
Q ss_pred HHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcC
Q 045393 298 HVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (580)
Q Consensus 298 h~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~ 351 (580)
|+|+.+|+.+++++|+++ +++++.+|.+|.||||+|+..|+.+++++|++.
T Consensus 210 h~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 260 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQA 260 (278)
T ss_dssp HHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 888888888888888887 445888888888888888888888888888865
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=7.2e-20 Score=176.10 Aligned_cols=193 Identities=17% Similarity=0.149 Sum_probs=146.8
Q ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccccCCCCHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCCCCccHHHH
Q 045393 118 TDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDIACFIIDKSPESLNTTRLPDELTLIHF 197 (580)
Q Consensus 118 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~t~L~~ 197 (580)
.|..+.++++.+...|+..+.+++...-+.........+.... .....-..+++............. ...++|+.
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~-~~l~~l~~ 136 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTA-AKLHSLCE 136 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHH-HHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccc-hhhhhhhh
Confidence 5778999999999999988887775543322211111111111 111111222333222221111111 34578999
Q ss_pred HHHcCCHHHHHHHHhhCCcc-----ccccCCCCChHHHHHHHc---CChHHHHHHHHhchhcccccCCCCCcHHHHHHHc
Q 045393 198 VVMRQNYDIMVKILGTNKEL-----IDRLDWHQRNPLHYAAAS---GNVKMAQRLLEESKRLAYKRDCNGETPLHLAAEN 269 (580)
Q Consensus 198 A~~~~~~~~~~~Ll~~~~~~-----~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 269 (580)
|+..++.+.+..++..+.+. ++..+..|.||||+|+.. |+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~ 215 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLT 215 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHT
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHc
Confidence 99999999999999988764 344588999999999999 8999999999999998 78899999999999999
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcc
Q 045393 270 GKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPE 317 (580)
Q Consensus 270 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 317 (580)
|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++++
T Consensus 216 g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 216 DNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999 89999999999999999999999999998854
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=3.9e-20 Score=184.04 Aligned_cols=147 Identities=19% Similarity=0.219 Sum_probs=115.9
Q ss_pred cCCCCChHHHHHHHc-CChHHHHHHHHhchhcccccC--CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHH
Q 045393 221 LDWHQRNPLHYAAAS-GNVKMAQRLLEESKRLAYKRD--CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL 297 (580)
Q Consensus 221 ~d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 297 (580)
.+..+.|+||.|+.. ++.++++.|++.|+++ +..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL 272 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPL 272 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence 344567899999999 9999999999999988 5556 7899999999999999999999999999 899999999999
Q ss_pred HHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCc--ccccccccccCCCCCHHHHHHH
Q 045393 298 HVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK--SVNIRAKNHSARSNTALEIAEI 374 (580)
Q Consensus 298 h~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~--~~d~~~~n~~~~g~t~l~~a~~ 374 (580)
|+|+..|+.+++++|+++ +++++.+|.+|.||||+|+..++.+++++|+... +.+....+. .+.|+++++..
T Consensus 273 h~A~~~g~~~~v~~LL~~---Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~--~~~t~l~i~~~ 346 (368)
T 3jue_A 273 HHATILGHTGLACLFLKR---GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA--GDETYLDIFRD 346 (368)
T ss_dssp HHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHHHcCcHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCC--CCCCHHHHHHH
Confidence 999999999999999999 4559999999999999999999999999998653 334445555 88999998876
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1e-19 Score=144.04 Aligned_cols=93 Identities=32% Similarity=0.467 Sum_probs=86.5
Q ss_pred CCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhh
Q 045393 33 GGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLE 112 (580)
Q Consensus 33 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 112 (580)
+|+||||+|+..|+.+++++|++.|.+ ++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------- 62 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD---------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN--------- 62 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC---------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence 489999999999999999999999998 88999999999999999999999999999999876
Q ss_pred hhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 045393 113 SLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147 (580)
Q Consensus 113 ~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 147 (580)
.+|.+|.||||+|+..|+.+++++|+++|++
T Consensus 63 ----~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 63 ----AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ----ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4788999999999999999999999999874
No 106
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=4.5e-20 Score=171.92 Aligned_cols=127 Identities=19% Similarity=0.253 Sum_probs=104.8
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhhCCccccccCCCCChHHHHHHHcCChHHHHHHHHh-chhcccccCCCCCcHHHHHHH
Q 045393 190 DELTLIHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE-SKRLAYKRDCNGETPLHLAAE 268 (580)
Q Consensus 190 ~~~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~ 268 (580)
.|.||||.|+..|+.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++. |+++ +.+|..|.||||+|+.
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAW 149 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHH
Confidence 677888888888888888888887655 788888999999999999999999999998 7766 7788899999999999
Q ss_pred cCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchh
Q 045393 269 NGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEME 319 (580)
Q Consensus 269 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~ 319 (580)
.|+.+++++|+++|++ ++.+|..|+||||+|+..++.++++.|++.+...
T Consensus 150 ~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 150 KGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp HTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred cCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 9999999999999998 8899999999999999999999999999886553
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=2.1e-19 Score=188.00 Aligned_cols=124 Identities=21% Similarity=0.221 Sum_probs=69.2
Q ss_pred HHHHHHHcCCHHHHHHHhhhcCccccc------CCCCCchhhHHHh---cCCHHHHHHHHhhCchhHHhhhhhhcccccC
Q 045393 4 ELLEVLRHGDEYKIKQLALRQDIFSTS------SPGGNAVLHMAVR---FRNQQVIREILRQQDFIALRLHYSLLRQKNL 74 (580)
Q Consensus 4 ~L~~A~~~g~~~~~~~ll~~~~~~~~~------~~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 74 (580)
.|+.|+..||.+.++.|++.+...+.. +..|.||||+|+. .|+.+++++|+++|++ ++.+|.
T Consensus 135 ~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~---------vn~~d~ 205 (497)
T 3lvq_E 135 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---------LDAKAA 205 (497)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC---------TTCCCS
T ss_pred HHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC---------CCccCC
Confidence 455566666666666666555333322 4455666666633 5556666666665555 555555
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 045393 75 MDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149 (580)
Q Consensus 75 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~ 149 (580)
.|+||||+|+..|+.+++++|+++|++++ .+|.+|.||||+|+..|+.+++++|+++|++.+
T Consensus 206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~-------------~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 206 DGNTALHYAALYNQPDCLKLLLKGRALVG-------------TVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp SSCCHHHHHTTTTCHHHHHHHHHTCCCCS-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 56666666666666666666666555544 345556666666666666666666666555544
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.7e-19 Score=188.84 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=99.3
Q ss_pred ChHHHHHHHcCChHHHHHHHHhchhccccc------CCCCCcHHHHHHH---cCcHHHHHHHHHhCCCccccccCCCCCH
Q 045393 226 RNPLHYAAASGNVKMAQRLLEESKRLAYKR------DCNGETPLHLAAE---NGKLKVLKLLINKYPDAIEIRNNSDRSI 296 (580)
Q Consensus 226 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------~~~g~tpL~~A~~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 296 (580)
.+.||.|+..|+.+.++.|++.|+++ +.. +..|.||||+|+. .|+.+++++|+++|++ ++.+|..|+||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcH
Confidence 36688888888888888888888776 333 6678888888855 7888888888888888 78888888888
Q ss_pred HHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcCChhHHHHhhcCcccccccccccCCCCCHHHH
Q 045393 297 LHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTALEI 371 (580)
Q Consensus 297 Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l~~ 371 (580)
||+|+.+|+.+++++|+++ ++++|.+|.+|+||||+|+..|+.+++++|++. |++++..+. .+.+++.+
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~~~~--h~~~~~~~ 279 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARKKHHKECEELLEQA-QAGTFAFPL--HVDYSWVI 279 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHT---CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT-CC-----------------
T ss_pred HHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCCCcc--eeeccccC
Confidence 8888888888888888887 444888888888888888888888888888865 777766444 44444333
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=2e-19 Score=142.25 Aligned_cols=90 Identities=44% Similarity=0.688 Sum_probs=65.8
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHH
Q 045393 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAA 337 (580)
Q Consensus 258 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~ 337 (580)
+|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++ .+++.+|.+|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCccCCCCCCHHHHHH
Confidence 367777777777777777777777777 6777777777777777777777777777763 347777777777777777
Q ss_pred hcCChhHHHHhhcC
Q 045393 338 MGLHSDVVFTLSRH 351 (580)
Q Consensus 338 ~~~~~~~~~~Ll~~ 351 (580)
..|+.+++++|++.
T Consensus 77 ~~~~~~~~~~Ll~~ 90 (93)
T 1n0q_A 77 RNGHLEVVKLLLEA 90 (93)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHc
Confidence 77777777777754
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.1e-19 Score=150.21 Aligned_cols=109 Identities=33% Similarity=0.472 Sum_probs=95.6
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHH
Q 045393 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPL 333 (580)
Q Consensus 254 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~L 333 (580)
.+|.+|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|++++ .+++.+|..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG---ADVNARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT---CCTTCCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC---CCCcccCCCCCCHH
Confidence 4678899999999999999999999999988 8888999999999999999999999999984 45889999999999
Q ss_pred HHHHhcCChhHHHHhhcCcccccccccccCCCCCHH
Q 045393 334 HLAAMGLHSDVVFTLSRHKSVNIRAKNHSARSNTAL 369 (580)
Q Consensus 334 h~A~~~~~~~~~~~Ll~~~~~d~~~~n~~~~g~t~l 369 (580)
|+|+..++.+++++|+++ |+|+|.++. .|.||-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~-ga~~n~~~~--~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAK-GADVNARSW--GSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTT-SSSHHHHSC--CCC---
T ss_pred HHHHHCCCHHHHHHHHHc-CCCCCcCCc--cccccc
Confidence 999999999999999964 899999998 888874
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.79 E-value=2.6e-19 Score=178.15 Aligned_cols=148 Identities=19% Similarity=0.220 Sum_probs=117.8
Q ss_pred CCccHHHHHHHc-CCHHHHHHHHhhCCccccccC--CCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHH
Q 045393 190 DELTLIHFVVMR-QNYDIMVKILGTNKELIDRLD--WHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLA 266 (580)
Q Consensus 190 ~~~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 266 (580)
.+.++||.|+.. ++.++++.|++.+.+ ++..+ ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A 275 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHA 275 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 567899999999 999999999998876 77777 89999999999999999999999999988 78899999999999
Q ss_pred HHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHHHHHhcC
Q 045393 267 AENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLHLAAMGL 340 (580)
Q Consensus 267 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh~A~~~~ 340 (580)
+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.+..+......+..+.|+++.+....
T Consensus 276 ~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 276 TILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999 8999999999999999999999999999886655556667778899999887654
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=6.4e-19 Score=145.51 Aligned_cols=109 Identities=29% Similarity=0.432 Sum_probs=98.6
Q ss_pred ccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHH
Q 045393 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHV 299 (580)
Q Consensus 220 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 299 (580)
.+|.+|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence 46889999999999999999999999999887 67789999999999999999999999999999 89999999999999
Q ss_pred HHHcCCHHHHHHHhcCcchhhhcccccCCCCcHH
Q 045393 300 AAKHGNWNIVSFILRSPEMENLINLVDRNGNTPL 333 (580)
Q Consensus 300 A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~L 333 (580)
|+..++.+++++|+++| +++|.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~g---a~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKG---ADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTS---SSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcC---CCCCcCCccccccc
Confidence 99999999999999984 55999999999873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.67 E-value=1e-16 Score=130.97 Aligned_cols=90 Identities=20% Similarity=0.316 Sum_probs=57.3
Q ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHHHHHHHcCCHHHHHHHhcCcchhhhcccccCCCCcHHH
Q 045393 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSILHVAAKHGNWNIVSFILRSPEMENLINLVDRNGNTPLH 334 (580)
Q Consensus 255 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~n~~d~~G~T~Lh 334 (580)
.+.+|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++++ .+++.+|..|+||||
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG---ADVXAQDKFGKTAFD 95 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccccccCCCcHHH
Confidence 455566666666666666666666666666 5666666666666666666666666666663 336666666666666
Q ss_pred HHHhcCChhHHHHh
Q 045393 335 LAAMGLHSDVVFTL 348 (580)
Q Consensus 335 ~A~~~~~~~~~~~L 348 (580)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 66666666666654
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=1.8e-16 Score=129.41 Aligned_cols=93 Identities=27% Similarity=0.430 Sum_probs=83.8
Q ss_pred ccccCCCCChHHHHHHHcCChHHHHHHHHhchhcccccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCCHH
Q 045393 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKRLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRNNSDRSIL 297 (580)
Q Consensus 218 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 297 (580)
....|.+|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl 94 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAF 94 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence 5566888999999999999999999999999887 67789999999999999999999999999999 899999999999
Q ss_pred HHHHHcCCHHHHHHH
Q 045393 298 HVAAKHGNWNIVSFI 312 (580)
Q Consensus 298 h~A~~~~~~~iv~~L 312 (580)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999999999999987
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=59.88 E-value=11 Score=36.29 Aligned_cols=97 Identities=7% Similarity=0.061 Sum_probs=55.2
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcc--ccccCCCCCHHHHHHHcCCHH----HHHHHhcCcc---hhhhccc
Q 045393 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAI--EIRNNSDRSILHVAAKHGNWN----IVSFILRSPE---MENLINL 324 (580)
Q Consensus 254 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~g~t~Lh~A~~~~~~~----iv~~Ll~~~~---~~~~~n~ 324 (580)
..|..|+..+......+..+..+.+++.-...+ -..++.|...+..+..++..+ +++.++.... .....-.
T Consensus 212 ~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~ 291 (351)
T 3gvo_A 212 VQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMM 291 (351)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHH
T ss_pred CCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHcc
Confidence 456667777777777766666555555432211 234566666676666666554 4444443211 0111234
Q ss_pred ccCCCCcHHHHHHhcCChhHHHHhhc
Q 045393 325 VDRNGNTPLHLAAMGLHSDVVFTLSR 350 (580)
Q Consensus 325 ~d~~G~T~Lh~A~~~~~~~~~~~Ll~ 350 (580)
+|..||-.+..+...+..+--+.++.
T Consensus 292 ~d~ygnyViq~~L~~~~~~~r~~i~~ 317 (351)
T 3gvo_A 292 KDQYANYVVQKMIDMAEPAQRKIIMH 317 (351)
T ss_dssp HSTTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCcchHHHHHHHHHhCCHHHHHHHHH
Confidence 77888888888887776655444443
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=55.43 E-value=22 Score=34.22 Aligned_cols=94 Identities=7% Similarity=0.068 Sum_probs=52.9
Q ss_pred cCCCCChHHHHHHHcCChHHHHHHHHhch--hcccccCCCCCcHHHHHHHcCcHH----HHHHHHHh--CCC---ccccc
Q 045393 221 LDWHQRNPLHYAAASGNVKMAQRLLEESK--RLAYKRDCNGETPLHLAAENGKLK----VLKLLINK--YPD---AIEIR 289 (580)
Q Consensus 221 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~tpL~~A~~~g~~~----~v~~Ll~~--~~~---~~~~~ 289 (580)
.|..|+-.+......+..+..+.+++.-. -.....++.|...+..+...+..+ +++.++.. ++. ..-..
T Consensus 213 ~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~ 292 (351)
T 3gvo_A 213 QDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMK 292 (351)
T ss_dssp TSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHH
T ss_pred CCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccC
Confidence 46667777777777776665555555321 111234556666666666666554 33444321 111 01246
Q ss_pred cCCCCCHHHHHHHcCCHHHHHHHhc
Q 045393 290 NNSDRSILHVAAKHGNWNIVSFILR 314 (580)
Q Consensus 290 d~~g~t~Lh~A~~~~~~~iv~~Ll~ 314 (580)
|..|+..+..+...+..+--+.+++
T Consensus 293 d~ygnyViq~~L~~~~~~~r~~i~~ 317 (351)
T 3gvo_A 293 DQYANYVVQKMIDMAEPAQRKIIMH 317 (351)
T ss_dssp STTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CcchHHHHHHHHHhCCHHHHHHHHH
Confidence 7888888888887777655444443
No 117
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=50.64 E-value=21 Score=34.55 Aligned_cols=62 Identities=6% Similarity=0.083 Sum_probs=33.7
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcHHHHHHHH
Q 045393 71 QKNLMDETALHIAARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHKRVIRILV 142 (580)
Q Consensus 71 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~~~v~~Ll 142 (580)
..|..|+..+......+..+..+.+++....- +.. -..+..|.-.+..+......+-...++
T Consensus 73 ~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~--------~~~--L~~~~~G~rVlQk~le~~~~~q~~~ii 134 (369)
T 3k49_A 73 SNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGN--------MKQ--LSLQMYACRVIQKALEYIDSNQRIELV 134 (369)
T ss_dssp HHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTC--------HHH--HHHSTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred hhCcccccHHHHHHHhCCHHHHHHHHHHHhhh--------HHH--HhcChhhHHHHHHHHHhCCHHHHHHHH
Confidence 46777887777777777776666666542110 000 123555665666665555444333333
No 118
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=45.40 E-value=95 Score=26.24 Aligned_cols=131 Identities=16% Similarity=0.105 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCHHHHHHHhhhcCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHHH
Q 045393 3 QELLEVLRHGDEYKIKQLALRQDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALHI 82 (580)
Q Consensus 3 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh~ 82 (580)
..+-.|...|+++....+.+.-+. .......=..|...|+.++++....+-.+ . ...+.+
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------------~--~~L~~L 69 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKLND----SITWERLIQEALAQGNASLAEMIYQTQHS--------------F--DKLSFL 69 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------------H--HHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCC----HHHHHHHHHHHHHcCChHHHHHHHHHhCC--------------H--HHHHHH
Confidence 356678888888888777654211 01122333567778888888888776544 1 133444
Q ss_pred HHHhCCHHHHHHHHhcCcccccCCCcchhhhhhhccCCCCCcHHHHHHHcCcH-HHHHHHHHcCCCCCcccccCCCCHHH
Q 045393 83 AARIGDRAIVSEIMKYLPAVNQVGPAPVLESLFRMTDIEGNTPLHNAVTNQHK-RVIRILVEKDSVPSSYINKAYQTPLS 161 (580)
Q Consensus 83 Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~l~~~d~~g~tpL~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~g~tpL~ 161 (580)
....|+.+-++.+.+.. ....+-+.+.+.+...|+. ++++.|.+.|.-+ -+..
T Consensus 70 y~~tg~~e~L~kla~iA-----------------~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~---------eA~~ 123 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIA-----------------QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP---------LAYA 123 (177)
T ss_dssp HHHHTCHHHHHHHHHHH-----------------HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH---------HHHH
T ss_pred HHHhCCHHHHHHHHHHH-----------------HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH---------HHHH
Confidence 44567776666665421 1233344567777777775 4777777665421 2455
Q ss_pred HHHHcCcHHHHHHHHhcC
Q 045393 162 IAIDARLNDIACFIIDKS 179 (580)
Q Consensus 162 ~A~~~~~~~~v~~Ll~~~ 179 (580)
.|-.+|..++.+.+++..
T Consensus 124 ~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 124 VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHTTCHHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHHh
Confidence 677788888888887654
No 119
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=43.76 E-value=20 Score=21.36 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 045393 3 QELLEVLRHGDEYKIKQL 20 (580)
Q Consensus 3 ~~L~~A~~~g~~~~~~~l 20 (580)
..++.||..||.+.++.|
T Consensus 15 QqiyvA~seGd~etv~~L 32 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHH
Confidence 356667777777777665
No 120
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=30.88 E-value=75 Score=30.56 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=45.0
Q ss_pred HHHHHHcCCHHHHHHHhhh---cCcccccCCCCCchhhHHHhcCCHHHHHHHHhhCchhHHhhhhhhcccccCCCCcHHH
Q 045393 5 LLEVLRHGDEYKIKQLALR---QDIFSTSSPGGNAVLHMAVRFRNQQVIREILRQQDFIALRLHYSLLRQKNLMDETALH 81 (580)
Q Consensus 5 L~~A~~~g~~~~~~~ll~~---~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~tpLh 81 (580)
+-.+...++.+..+.++++ ....-..|..|+..+......+..+..+.+++.-.. .-.--..+..|.-.+.
T Consensus 46 lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g------~~~~L~~~~~G~rVlQ 119 (369)
T 3k49_A 46 IQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKG------NMKQLSLQMYACRVIQ 119 (369)
T ss_dssp HHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTT------CHHHHHHSTTHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhh------hHHHHhcChhhHHHHH
Confidence 3345555666665555543 112233567777777777777777666666554322 0001123445555555
Q ss_pred HHHHhCCHHHHHHHHh
Q 045393 82 IAARIGDRAIVSEIMK 97 (580)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~ 97 (580)
.+......+-...+++
T Consensus 120 k~le~~~~~q~~~ii~ 135 (369)
T 3k49_A 120 KALEYIDSNQRIELVL 135 (369)
T ss_dssp HHHHHSCHHHHHHHHG
T ss_pred HHHHhCCHHHHHHHHH
Confidence 5555555444444443
No 121
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=22.03 E-value=1.6e+02 Score=27.87 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045393 508 GFTWIALVSMTLAFVTGLYAV 528 (580)
Q Consensus 508 ~~~~~~~~~~~~af~~~~~~~ 528 (580)
.+..++++.+..+|++|+|=|
T Consensus 281 ~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 466778888999999999976
Done!