BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045394
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P6Y|A Chain A, X-Ray Structure Of The Protein Q9km02_vibch From Vibrio
Cholerae At The Resolution 1.63 A. Northeast Structural
Genomics Consortium Target Vcr80
Length = 142
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 148 LTVNAGEDVTMKVMSFSQQ-----GSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFE 202
L + G D+ +++ QQ GS A C+ G +S + +R S TL FE
Sbjct: 7 LRLTRGXDLKQQIVQLVQQHRIHAGSIASCV----GCLSTLHIR-LADSVSTLQVSAPFE 61
Query: 203 ILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRV 236
ILSLSG+ + + +++A GRV
Sbjct: 62 ILSLSGT--------LTYQHCHLHIAVADAQGRV 87
>pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|B Chain B, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|C Chain C, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|D Chain D, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|E Chain E, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|F Chain F, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|G Chain G, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|H Chain H, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|J Chain J, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|K Chain K, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|L Chain L, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|M Chain M, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|O Chain O, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|P Chain P, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|R Chain R, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|S Chain S, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
Length = 411
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 146 HVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLT--YEGRF-- 201
H + V GE T + + + R +L+ G S T+ QP + G + Y+ F
Sbjct: 115 HTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTST-TMLQPLAELGEICRRYDALFYT 173
Query: 202 -EILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDG 234
SL G+ + +D G + S GM L GP G
Sbjct: 174 DATASLGGNPLETDVWGLDAVSAGMQXCLGGPSG 207
>pdb|4F4F|A Chain A, X-Ray Crystal Structure Of Plp Bound Threonine Synthase
From Brucella Melitensis
pdb|4F4F|B Chain B, X-Ray Crystal Structure Of Plp Bound Threonine Synthase
From Brucella Melitensis
Length = 468
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 160 VMSFSQQGSRAICILSANGTISNVTLRQPTSSGGT----LTYEGRFE 202
+ +F + + I IL NG +S V RQ TSSG + L+ EG F+
Sbjct: 154 IEAFGGRDNTDIFILFPNGRVSPVQQRQMTSSGFSNVHALSIEGNFD 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,933,303
Number of Sequences: 62578
Number of extensions: 293065
Number of successful extensions: 524
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 10
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)