BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045394
         (302 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 24/172 (13%)

Query: 99  SIPLTGEYSAWKRGRGRPVDNTKKSYK---YEHESPGEKIAYFVGANFTPHVLTVNAGED 155
           S P T   +  KR RGRP  +  K+        +SP              HVL V+ G D
Sbjct: 75  SDPNTSSSAPGKRPRGRPPGSKNKAKPPIIVTRDSPNA---------LRSHVLEVSPGAD 125

Query: 156 VTMKVMSFSQQGSRAICILSANGTISNVTLRQPTS---------SGGTLTYEGRFEILSL 206
           +   V +++++  R + +L  NGT+SNVTLRQP +          GG +T  GRFEILSL
Sbjct: 126 IVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSL 185

Query: 207 SGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSF 258
           +G+ +          +GG+S+ LAG  G+VVGG +   LIA+ PV ++  SF
Sbjct: 186 TGTVL---PPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234


>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
           GN=glmU PE=3 SV=1
          Length = 621

 Score = 42.0 bits (97), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 148 LTVNAGEDVTMKVMSFS-QQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSL 206
           L +  G+D+  ++  F+ QQ  +A  +LSA G++S  TLR    +   L  E R EIL+L
Sbjct: 473 LRLLPGQDLKQELERFARQQPLQAGFVLSAVGSLSQATLRLADQTEDYLLSE-RLEILAL 531

Query: 207 SGSYMPSDNGGTKSRSGGMSVSLAGPD--GRVVGGGLA-GFLI 246
           SGS  P           G+ + LA  D  GR  GG L  G LI
Sbjct: 532 SGSLCPD----------GVHLHLAVADAQGRTWGGHLRPGCLI 564


>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
           JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
          Length = 632

 Score = 39.7 bits (91), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 11/101 (10%)

Query: 148 LTVNAGEDVTMKVMSFS-QQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSL 206
           L +  G+D+  ++   + QQ  +A  +LSA G++S  TLR    +G  L  E R EIL+L
Sbjct: 475 LRLFPGQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHLLSE-RLEILAL 533

Query: 207 SGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLA-GFLI 246
           SGS  P    G       + +++A   G+  GG L  G LI
Sbjct: 534 SGSLCPD---GVH-----LHLTVADARGQTWGGHLRPGCLI 566


>sp|Q0V8T6|CTP5A_RAT Contactin-associated protein like 5-1 OS=Rattus norvegicus
           GN=Cntnap5a PE=2 SV=1
          Length = 1305

 Score = 36.2 bits (82), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 81  YGPDGKLTTALSPMPISASIPLTGEYSA----WKRGRG--RPVDNTKKSY 124
           Y  D  L +  SPM  S+S+ LTG YS+    WK G G   PVD+  + +
Sbjct: 28  YNCDDPLASFFSPMTFSSSLDLTGSYSSAQLNWKMGTGGWSPVDSNAQQW 77


>sp|Q8NR40|GLGB_CORGL 1,4-alpha-glucan branching enzyme GlgB OS=Corynebacterium
           glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
           LMG 3730 / NCIMB 10025) GN=glgB PE=3 SV=1
          Length = 731

 Score = 32.7 bits (73), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 23/94 (24%)

Query: 104 GEYSAWKRGRGRPVDNTKKSYKYEHE---------------SPGEKIAYFVGANFTPHVL 148
           G+   W  G+G P D         HE               SP      F G  FT    
Sbjct: 576 GQREEWAEGQGLPWDIVDGWQGEYHEAIRTLTRSLNGVYSDSPALHTQDFTGEGFT---- 631

Query: 149 TVNAGEDVTMKVMSFSQ---QGSRAICILSANGT 179
             N G+D T  +++F++    GS+ +C+ + +GT
Sbjct: 632 -WNKGDDATNNILAFTRFGSDGSQMLCVFNLSGT 664


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.130    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,608,037
Number of Sequences: 539616
Number of extensions: 5863362
Number of successful extensions: 18913
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 18230
Number of HSP's gapped (non-prelim): 660
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)