Query 045394
Match_columns 302
No_of_seqs 238 out of 602
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 22:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hx0_A Putative DNA-binding pr 99.9 2.5E-27 8.6E-32 203.4 15.9 121 138-268 13-134 (154)
2 2p6y_A Hypothetical protein VC 99.9 3.3E-27 1.1E-31 200.1 15.9 117 142-268 1-118 (142)
3 2dt4_A Hypothetical protein PH 99.9 7.1E-28 2.4E-32 203.7 10.2 119 143-268 9-130 (143)
4 3htn_A Putative DNA binding pr 99.9 2.8E-27 9.5E-32 202.1 11.8 118 143-267 15-135 (149)
5 2h6l_A Hypothetical protein; N 99.9 5.8E-27 2E-31 198.7 9.7 119 142-268 8-129 (146)
6 3hwu_A Putative DNA-binding pr 99.9 1E-24 3.4E-29 185.8 12.5 118 144-268 13-133 (147)
7 2ezd_A High mobility group pro 96.3 0.0016 5.4E-08 40.6 1.9 16 109-124 4-19 (26)
8 4dyq_A Gene 1 protein; GP1, oc 65.4 1.8 6.3E-05 35.4 0.9 14 71-84 3-16 (140)
9 1xv2_A ALDC, hypothetical prot 56.5 36 0.0012 30.8 7.9 96 153-253 96-202 (237)
10 4i95_A Putative uncharacterize 28.5 44 0.0015 28.3 3.5 34 170-205 37-70 (142)
11 1t3g_A X-linked interleukin-1 26.7 40 0.0014 27.9 2.9 36 141-176 40-77 (159)
12 3fcg_A F1 capsule-anchoring pr 22.5 95 0.0033 24.1 4.1 47 181-237 27-74 (90)
No 1
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.95 E-value=2.5e-27 Score=203.39 Aligned_cols=121 Identities=21% Similarity=0.391 Sum_probs=107.6
Q ss_pred ccCCCceeEEEEecCCChHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEeeeeeccCCCC
Q 045394 138 FVGANFTPHVLTVNAGEDVTMKVMSFSQ-QGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNG 216 (302)
Q Consensus 138 ~~g~~~~phVIrV~~GEDIve~I~~Faq-~~~~a~~ILSAiGaVSnVtLr~~~~~~~~~t~eG~fEILSLsGsis~~e~g 216 (302)
+....+++|++||++||||+++|.+||+ ++.+++||++++|++++++|+|++... +++|+|+|||+||+|||++.
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--- 88 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT--- 88 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence 4667899999999999999999999995 577789999999999999999999874 78899999999999999995
Q ss_pred CCCCCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394 217 GTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH 268 (302)
Q Consensus 217 ~~~~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~ 268 (302)
..|||++|+|.||+++||||++++++..++||+|.+| .+..++|++
T Consensus 89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~-~~~~~~R~~ 134 (154)
T 2hx0_A 89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTFSRQP 134 (154)
T ss_dssp -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC-TTEEEEEEE
T ss_pred -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEc-cCceEEEec
Confidence 2799999999999999999998777778999999985 444566654
No 2
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.95 E-value=3.3e-27 Score=200.08 Aligned_cols=117 Identities=26% Similarity=0.390 Sum_probs=103.1
Q ss_pred CceeEEEEecCCChHHHHHHHHHHh-CCccEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEeeeeeccCCCCCCCC
Q 045394 142 NFTPHVLTVNAGEDVTMKVMSFSQQ-GSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKS 220 (302)
Q Consensus 142 ~~~phVIrV~~GEDIve~I~~Faq~-~~~a~~ILSAiGaVSnVtLr~~~~~~~~~t~eG~fEILSLsGsis~~e~g~~~~ 220 (302)
.|++|++||++||||+++|.+||++ +.+++||++++|++++++|++++... +++++|+|||+||+|||++.
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~------- 72 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ------- 72 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-------
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-------
Confidence 3899999999999999999999975 66689999999999999999999874 78899999999999999984
Q ss_pred CCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394 221 RSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH 268 (302)
Q Consensus 221 ~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~ 268 (302)
..|||++|+|.||+++||||+++++++.++||+|.+| .+..++|++
T Consensus 73 -~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~-~~~~~~R~~ 118 (142)
T 2p6y_A 73 -HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY-PQHHFTREF 118 (142)
T ss_dssp -CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEEC-TTEEEEEEE
T ss_pred -CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEc-cCCeEEEee
Confidence 2699999999999999999998777788999999985 444566654
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.95 E-value=7.1e-28 Score=203.73 Aligned_cols=119 Identities=21% Similarity=0.307 Sum_probs=103.8
Q ss_pred ceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeccCCCCCCC
Q 045394 143 FTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSG---GTLTYEGRFEILSLSGSYMPSDNGGTK 219 (302)
Q Consensus 143 ~~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~e~g~~~ 219 (302)
-++|++||++||||+++|++||+++.+..|+++++|++++|+|+|++.+. ..++++|+|||+||+|||++.++
T Consensus 9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g---- 84 (143)
T 2dt4_A 9 GRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG---- 84 (143)
T ss_dssp EEEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT----
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC----
Confidence 47999999999999999999998665555556999999999999998764 36889999999999999999655
Q ss_pred CCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394 220 SRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH 268 (302)
Q Consensus 220 ~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~ 268 (302)
.++.|||++|+|.||+++||||..++ +. ++||+|.+| .+..++|.+
T Consensus 85 ~p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~-~~~~~~R~~ 130 (143)
T 2dt4_A 85 EPFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQEL-KGEKIERKP 130 (143)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEE-EESCCEEBC
T ss_pred CceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEc-CCCeEEEeC
Confidence 48999999999999999999999888 56 999999986 444567766
No 4
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.94 E-value=2.8e-27 Score=202.12 Aligned_cols=118 Identities=16% Similarity=0.255 Sum_probs=103.8
Q ss_pred ceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeccCCCCCCC
Q 045394 143 FTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSG---GTLTYEGRFEILSLSGSYMPSDNGGTK 219 (302)
Q Consensus 143 ~~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~e~g~~~ 219 (302)
-+.|++||++||||+++|.+||+++.+..|+++++|++++|+|++++.+. ..++++|+|||+||+|||++.++
T Consensus 15 gr~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG---- 90 (149)
T 3htn_A 15 GNKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE---- 90 (149)
T ss_dssp TTEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----
T ss_pred CCEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----
Confidence 38999999999999999999998777776667999999999999998764 37899999999999999999755
Q ss_pred CCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhc
Q 045394 220 SRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQK 267 (302)
Q Consensus 220 ~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~ 267 (302)
.++.|||++|+|.||+++||||..+ ++..++||+|.++.. .++|+
T Consensus 91 ~p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~--~~~R~ 135 (149)
T 3htn_A 91 QVYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE--RISRT 135 (149)
T ss_dssp EEEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS--CCEEE
T ss_pred CceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC--eeEEe
Confidence 4899999999999999999999998 567899999999633 45554
No 5
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.94 E-value=5.8e-27 Score=198.73 Aligned_cols=119 Identities=23% Similarity=0.244 Sum_probs=102.2
Q ss_pred CceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeccCCCCCC
Q 045394 142 NFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSG---GTLTYEGRFEILSLSGSYMPSDNGGT 218 (302)
Q Consensus 142 ~~~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~e~g~~ 218 (302)
.-++|++||++||||+++|++||++..+..|+++++|+|++++|++++... ..++++|+|||+||+|||++.++
T Consensus 8 ~gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg--- 84 (146)
T 2h6l_A 8 VGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS--- 84 (146)
T ss_dssp CCEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT---
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC---
Confidence 347999999999999999999997654544445999999999999998875 37899999999999999999655
Q ss_pred CCCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394 219 KSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH 268 (302)
Q Consensus 219 ~~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~ 268 (302)
.++.|||++|+ .||+++||||.+++| .++||+|.+| .+..++|++
T Consensus 85 -~p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~-~~~~~~R~~ 129 (146)
T 2h6l_A 85 -KPFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPL-SGEAPERAF 129 (146)
T ss_dssp -EEEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEEC-BSCCCBEEE
T ss_pred -CceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEc-CCCcEEEeE
Confidence 48999999999 999999999999885 6999999996 444566654
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.92 E-value=1e-24 Score=185.75 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=102.1
Q ss_pred eeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeccCCCCCCCC
Q 045394 144 TPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSG---GTLTYEGRFEILSLSGSYMPSDNGGTKS 220 (302)
Q Consensus 144 ~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~e~g~~~~ 220 (302)
+.+++||++||||+++|.+||++..+..++++++|++++++|++++.+. ...+++ ++||+||+|||+..|+ .
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~ 87 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K 87 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence 6699999999999999999999888888888999999999999998764 256788 8999999999998665 5
Q ss_pred CCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394 221 RSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH 268 (302)
Q Consensus 221 ~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~ 268 (302)
++.|||++|+|.||+++||||..+.+...|+||+|..+ +..+.|++
T Consensus 88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~--~~~~~R~~ 133 (147)
T 3hwu_A 88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY--PQRLDRFV 133 (147)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE--SSCCBEEE
T ss_pred ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc--CCeEEEEE
Confidence 89999999999999999999998855435999999974 33555543
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=96.35 E-value=0.0016 Score=40.62 Aligned_cols=16 Identities=44% Similarity=0.553 Sum_probs=14.2
Q ss_pred ccCCCCCCCCCCcCCC
Q 045394 109 WKRGRGRPVDNTKKSY 124 (302)
Q Consensus 109 ~kr~RGRP~gS~~k~k 124 (302)
.||+||||.|||||.-
T Consensus 4 pKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 4 PKRPRGRPKGSKNKGA 19 (26)
T ss_dssp CCCCSSCCTTCCCCSC
T ss_pred CcCCCCCcCcccccCc
Confidence 5999999999999853
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=65.42 E-value=1.8 Score=35.45 Aligned_cols=14 Identities=43% Similarity=0.854 Sum_probs=6.2
Q ss_pred ccccCCCCCCCCCC
Q 045394 71 GKKKRGRPRKYGPD 84 (302)
Q Consensus 71 ~kkKRGRPrkY~~d 84 (302)
.|+|+|||.||-+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 48999999999876
No 9
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=56.53 E-value=36 Score=30.77 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCCC-------eeeeecceeEEEeeeee----ccCCCCCCCCC
Q 045394 153 GEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGG-------TLTYEGRFEILSLSGSY----MPSDNGGTKSR 221 (302)
Q Consensus 153 GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~~-------~~t~eG~fEILSLsGsi----s~~e~g~~~~~ 221 (302)
-+++-+.|.+.. .....|-+-.-|..++|.+|-...... ...-+-.|++=...|++ ++.--+|- -
T Consensus 96 ~~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi--~ 171 (237)
T 1xv2_A 96 DDVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGV--G 171 (237)
T ss_dssp HHHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTT--B
T ss_pred HHHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhccc--C
Confidence 344444444443 556678889999999999997542211 11111226666666665 44332222 2
Q ss_pred CCceEEEEeCCCCcEEeeecCCceEEecceEE
Q 045394 222 SGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQV 253 (302)
Q Consensus 222 ~~HLHISLA~~dGqV~GGHL~g~lIAastVEV 253 (302)
..++|+.+-+.| +-+||||.+-.+-..++++
T Consensus 172 v~G~HlHFisdD-r~~GGHVldf~~~~~~~~~ 202 (237)
T 1xv2_A 172 SAGFHIHFADDE-RAYGGHVLDFEVDDVVVEI 202 (237)
T ss_dssp CSEEEEEEEETT-SSCEEEEEEEEEEEEEEEE
T ss_pred CceeEEEEEcCC-CCCCcceEEEEecceEEEE
Confidence 334555555444 4599999986665556665
No 10
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=28.54 E-value=44 Score=28.35 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=29.2
Q ss_pred cEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEE
Q 045394 170 AICILSANGTISNVTLRQPTSSGGTLTYEGRFEILS 205 (302)
Q Consensus 170 a~~ILSAiGaVSnVtLr~~~~~~~~~t~eG~fEILS 205 (302)
..=|||.-|.+.|+++.. + .+..++..|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~~-~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRP-G-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEec-C-CCcEEEEeEEEEecC
Confidence 567999999999999993 3 457999999999997
No 11
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=26.74 E-value=40 Score=27.91 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=28.4
Q ss_pred CCceeEEE--EecCCChHHHHHHHHHHhCCccEEEEEe
Q 045394 141 ANFTPHVL--TVNAGEDVTMKVMSFSQQGSRAICILSA 176 (302)
Q Consensus 141 ~~~~phVI--rV~~GEDIve~I~~Faq~~~~a~~ILSA 176 (302)
.+++..+- .+.+|++|.+.|.+..++..+.++|||-
T Consensus 40 ~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 40 YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 34554432 2679999999999999999999999985
No 12
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=22.45 E-value=95 Score=24.10 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=28.5
Q ss_pred eeEEEeCCCCC-CCeeeeecceeEEEeeeeeccCCCCCCCCCCCceEEEEeCCCCcEE
Q 045394 181 SNVTLRQPTSS-GGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVV 237 (302)
Q Consensus 181 SnVtLr~~~~~-~~~~t~eG~fEILSLsGsis~~e~g~~~~~~~HLHISLA~~dGqV~ 237 (302)
+.|+|+|-+.- ..+..=-|+|||--|.-. . -.+-|.|.+-+.||+.-
T Consensus 27 A~V~v~qnG~~iy~~~VppGpF~I~dl~~~----~------~~Gdl~V~v~eadG~~~ 74 (90)
T 3fcg_A 27 ARVEVLRDGYTVSNELVPSGPFELANLPLG----G------GSGELKVIIHESDGTKQ 74 (90)
T ss_dssp EEEEEESSSCEEEEEEECSEEEEECCCC-------------CCEEEEEEEECTTSCEE
T ss_pred cEEEEEECCEEEEEeEeCCCCeEEcCCccc----C------CceeEEEEEEECCCCEE
Confidence 56778873321 023344589999766421 1 12359999999999763
Done!