BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045396
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin
And Arm Domains Of Calreticulin
Length = 332
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/318 (49%), Positives = 204/318 (64%), Gaps = 31/318 (9%)
Query: 25 VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGD-PNDKGIQTSEDYRFYAI 81
++F+E+F DG W +RWV S K D G++ ++GK+ GD DKG+QTS+D RFYA+
Sbjct: 7 IYFKEQFLDGDAWTNRWVESKHKSD---FGKFVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 82 SAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDIC 141
SA+F FSNK +TLV QF+VKHEQ +DCGGGY+KL +DQK GD+ Y+IMFGPDIC
Sbjct: 64 SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 142 GYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLY 201
G TKKVH I Y G N LI K++ + D+ TH+YT I+RPD TY + IDN++ +SGSL
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 202 SDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXX 261
DWD LPPK IKDPDA KPEDWD++ I DP D KPE +D
Sbjct: 184 DDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWD-----------------KGG 226
Query: 262 XXXXXXXPTIPNPEYKGPW------KPKDDPD--LYVYPNLKYVGIELWQVKSGTMFDNV 313
I NP+YKG W P+ PD +Y Y + +G++LWQVKSGT+FDN
Sbjct: 227 SGGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNF 286
Query: 314 LVSDDPEYAKKLAEETWG 331
L+++D YA++ ETWG
Sbjct: 287 LITNDEAYAEEFGNETWG 304
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain
Length = 273
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 140/197 (71%), Gaps = 7/197 (3%)
Query: 25 VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGD-PNDKGIQTSEDYRFYAI 81
++F+E+F DG W +RWV S K D G++ ++GK+ GD DKG+QTS+D RFYA+
Sbjct: 7 IYFKEQFLDGDAWTNRWVESKHKSD---FGKFVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 82 SAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDIC 141
SA+F FSNK +TLV QF+VKHEQ +DCGGGY+KL +DQK GD+ Y+IMFGPDIC
Sbjct: 64 SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 142 GYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLY 201
G TKKVH I Y G N LI K++ + D+ TH+YT I+RPD TY + IDN++ +SGSL
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 202 SDWDLLPPK-TIKDPDA 217
DWD LPPK + PDA
Sbjct: 184 DDWDFLPPKGSGSGPDA 200
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 285 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWG 331
D ++Y Y + +G++LWQVKSGT+FDN L+++D YA++ ETWG
Sbjct: 199 DANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 245
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|B Chain B, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|C Chain C, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POW|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
Length = 265
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 133/187 (71%), Gaps = 6/187 (3%)
Query: 25 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAI 81
V+F+E+F DGW SRW+ S K D G++ ++GK+ GD DKG+QTS+D RFYA+
Sbjct: 12 VYFKEQFLDGDGWTSRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYAL 68
Query: 82 SAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDIC 141
SA F FSNK +TLV QF+VKHEQ +DCGGGY+KL +DQ GD+ Y+IMFGPDIC
Sbjct: 69 SASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDIC 128
Query: 142 GYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLY 201
G TKKVH I Y G N LI K++ C+ D+ TH+YT I+RPD TY + IDN++ +SGSL
Sbjct: 129 GPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 188
Query: 202 SDWDLLP 208
DWD LP
Sbjct: 189 DDWDFLP 195
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 285 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWG 331
DP +Y Y N +G++LWQVKSGT+FDN L+++D YA++ ETWG
Sbjct: 199 DPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 245
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|B Chain B, Structural Basis Of Carbohydrate Recognition By
Calreticulin
Length = 273
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 139/197 (70%), Gaps = 7/197 (3%)
Query: 25 VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGD-PNDKGIQTSEDYRFYAI 81
++F+E+F DG W +RWV S K D G++ ++GK+ GD DKG+QTS+D RFYA+
Sbjct: 7 IYFKEQFLDGDAWTNRWVESKHKSD---FGKFVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 82 SAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDIC 141
SA+F FSNK +TLV QF+VKHEQ +DCGGGY+KL +DQK GD+ Y+I FGPDIC
Sbjct: 64 SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDXHGDSEYNIXFGPDIC 123
Query: 142 GYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLY 201
G TKKVH I Y G N LI K++ + D+ TH+YT I+RPD TY + IDN++ +SGSL
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 202 SDWDLLPPK-TIKDPDA 217
DWD LPPK + PDA
Sbjct: 184 DDWDFLPPKGSGSGPDA 200
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 285 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWG 331
D ++Y Y + +G++LWQVKSGT+FDN L+++D YA++ ETWG
Sbjct: 199 DANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWG 245
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 171/391 (43%), Gaps = 85/391 (21%)
Query: 24 HVFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGD-------PNDKGIQTSEDY 76
V+F + FD G S W+ S KKD+ T E GKW D P DKG+
Sbjct: 25 EVYFADSFDRGTLSGWILSKAKKDD-TDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRA 83
Query: 77 RFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSG--EVDQKKFGGDTPYS 133
+ +AISA+ + F K L+ Q+ V + ++CGG Y+KLLS E++ +F TPY+
Sbjct: 84 KHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYT 143
Query: 134 IMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFILRPD 183
IMFGPD CG K+H I + + +E + TD+ TH+YT IL PD
Sbjct: 144 IMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 202
Query: 184 ATYSILIDNAEKQSGSLYSDWD--LLPPKTIKDPDAKKPEDWDDK--------------- 226
++ IL+D + SG+L +D + P + I+DP+ +KPEDWD++
Sbjct: 203 NSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWN 262
Query: 227 -----------------------EYIPDPEDKKPEGYD-DIPKEIXXXXXXXXXXXXXXX 262
EY+PDP+ +KPE +D D+ E
Sbjct: 263 EDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPG 322
Query: 263 XXXXXXPTIPNPEYKGPWKPK--DDPDL------YVYPN--------------LKYVGIE 300
P I NP YKG WKP D+P+ PN +G+E
Sbjct: 323 CGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLE 382
Query: 301 LWQVKSGTMFDNVLVSDDPEYAKKLAEETWG 331
LW + S FDN +V D A + WG
Sbjct: 383 LWSMTSDIFFDNFIVCGDRRVVDDWANDGWG 413
>pdb|1HHN|A Chain A, Calreticulin P-Domain
Length = 101
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 210 KTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXP 269
K IKDPDA KPEDWD++ I DP D KPE + D P+ I P
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDW-DKPEHIPDPDAKKPEDWDEEMDGEWEPP 60
Query: 270 TIPNPEYKGPWKPK--DDPD---LYVYPNL 294
I NPEYKG WKP+ D+PD +++P +
Sbjct: 61 VIQNPEYKGEWKPRQIDNPDYKGTWIHPEI 90
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 189-261)
Length = 74
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 210 KTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXXXXXXP 269
K IKDPDA KPEDWD++ I DP D KPE + D P+ I P
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDW-DKPEHIPDPDAKKPEDWDEEMDGEWEPP 60
Query: 270 TIPNPEYKGPWKPK 283
I NPEYKG WKP+
Sbjct: 61 VIQNPEYKGEWKPR 74
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 221-256)
Length = 37
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 209 PKTIKDPDAKKPEDWDDK 226
P+ I DPDAKKPEDWD++
Sbjct: 3 PEHIPDPDAKKPEDWDEE 20
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 62 NGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGE 120
NGD D GI T+ +Y + + P + KDK V F + K D G K+ GE
Sbjct: 260 NGDKPDGGIMTTIEYE--EVGIDHPFYVWKDKKFVPDFYYEESLKKDLGMHNSKVFKGE 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,662,332
Number of Sequences: 62578
Number of extensions: 519634
Number of successful extensions: 916
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 24
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)