Query 045396
Match_columns 399
No_of_seqs 215 out of 680
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 12:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0674 Calreticulin [Posttran 100.0 7E-130 2E-134 952.0 27.7 350 9-361 3-381 (406)
2 PF00262 Calreticulin: Calreti 100.0 9E-111 2E-115 838.9 15.2 290 25-315 1-367 (367)
3 KOG0675 Calnexin [Posttranslat 100.0 4E-102 8E-107 791.5 23.7 312 27-340 43-439 (558)
4 PF00262 Calreticulin: Calreti 99.8 1.3E-20 2.8E-25 190.0 -0.6 86 195-280 223-324 (367)
5 KOG0675 Calnexin [Posttranslat 99.7 1.5E-17 3.2E-22 171.9 12.2 178 92-283 169-388 (558)
6 KOG0674 Calreticulin [Posttran 99.7 7E-18 1.5E-22 166.7 7.8 83 194-278 210-302 (406)
7 PLN03161 Probable xyloglucan e 70.2 71 0.0015 32.5 11.9 26 171-197 141-166 (291)
8 PF06439 DUF1080: Domain of Un 64.9 49 0.0011 29.3 8.7 139 30-198 5-153 (185)
9 PF07210 DUF1416: Protein of u 41.9 35 0.00075 28.9 3.6 28 92-120 5-32 (85)
10 PF07172 GRP: Glycine rich pro 37.9 23 0.0005 30.2 2.0 16 1-17 1-16 (95)
11 PF10262 Rdx: Rdx family; Int 34.2 44 0.00095 26.6 3.0 22 176-197 35-56 (76)
12 PF11025 GP40: Glycoprotein GP 33.1 1.4E+02 0.003 27.8 6.2 72 106-198 5-76 (165)
13 PF07691 PA14: PA14 domain; I 31.1 42 0.00091 28.4 2.6 28 172-199 58-85 (145)
14 PF02973 Sialidase: Sialidase, 30.6 1.9E+02 0.0042 27.6 7.1 106 77-199 18-132 (190)
15 KOG2963 RNA-binding protein re 27.0 1.8E+02 0.004 30.7 6.7 39 299-338 294-337 (405)
16 PF02747 PCNA_C: Proliferating 21.9 96 0.0021 27.0 3.1 21 91-118 105-125 (128)
17 PF04202 Mfp-3: Foot protein 3 21.5 67 0.0015 26.2 1.9 20 1-20 1-20 (71)
No 1
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-130 Score=951.97 Aligned_cols=350 Identities=64% Similarity=1.166 Sum_probs=326.3
Q ss_pred HHHHHHHHH--hhhccceeeeeccCC--CCCCCCeEeCccccCCCCcCeEEEeccccCCCCC-CceeeeCccccceeecc
Q 045396 9 LSLTLLTIF--LTIASAHVFFEERFD--DGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISA 83 (399)
Q Consensus 9 ~~~~~~~~~--~~~~~~~v~F~E~F~--~~w~~rWv~S~~kk~~~~~G~w~~~~g~~~g~~~-D~GL~t~~~ak~yaIsa 83 (399)
+.+++||+| +++++++|||.|.|. ++|+.|||+|++++. ..|.|.+++|+|+|+++ |+||||++++||||||+
T Consensus 3 ~~~~~~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa 80 (406)
T KOG0674|consen 3 PSFWVLCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISA 80 (406)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeeeec
Confidence 334444444 246778899999995 579999999999864 57999999999999987 99999999999999999
Q ss_pred cCCCcCCCCCceEEEEEEecccccccCceeEEeccCCCCCCCcCCCCCeeEEEecCCCCCCCCeEEEEEeeCCccccccc
Q 045396 84 EFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKK 163 (399)
Q Consensus 84 ~l~~f~~~~k~LVvQYeVK~e~~idCGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~kk 163 (399)
+|++|+|++|+|||||+|||+|+|+|||||||||++++||.+|+++|||.|||||||||++|+|||+||+|+|+||+|++
T Consensus 81 ~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhlikK 160 (406)
T KOG0674|consen 81 KFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLIKK 160 (406)
T ss_pred ccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccceEEEEeCCCCceEEEECceeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 045396 164 EVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDI 243 (399)
Q Consensus 164 ~~~~~~D~~tHLYTLIi~pdntyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~Dp~d~KPeDWdd~~~I~DP~a~KPeDWDde 243 (399)
.++|++|++|||||||||||+||+|+|||+.+.+|||.+||+++||++|.||.++||+||+++++|+||+++||++|+ .
T Consensus 161 ~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe-~ 239 (406)
T KOG0674|consen 161 DIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE-K 239 (406)
T ss_pred ccccccCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC----------------------CCCCCCCCCCcceEeEEE
Q 045396 244 PKEITDPDAKKPDDWDDEEDGEWTAPTIPNPEYKGPWKPK----------------------DDPDLYVYPNLKYVGIEL 301 (399)
Q Consensus 244 p~~IpDP~a~KPedwd~~~dGeW~pp~I~NP~YkG~WkP~----------------------~dp~~~~~~~i~~vG~El 301 (399)
|++||||+|+||++||++|||+|+||||+||+|+|+|+|+ ++|++|.+.+|++|||||
T Consensus 240 pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldL 319 (406)
T KOG0674|consen 240 PEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDL 319 (406)
T ss_pred ccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeE
Confidence 9999999999999999999999999999999999999997 556678999999999999
Q ss_pred eEeecCceeeeEEEcCCHHHHHHHHHHhhccchhHHHHHHHHHHhhh--hhhhhcCCCCCCC
Q 045396 302 WQVKSGTMFDNVLVSDDPEYAKKLAEETWGKHKDAEKAAFDEAEKKR--EEEESKDAPDSDA 361 (399)
Q Consensus 302 W~~~~g~~FDNili~dd~~~A~~~~~~t~~~k~~~E~~~~~~~~~~~--~~~e~~~~~~~~~ 361 (399)
|||+|||||||||||||+++|++++++||+..+.+|++|++++.+.+ .++|.+++.++++
T Consensus 320 WQVKSgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~~~k~qrk~eee~kka~~e~e 381 (406)
T KOG0674|consen 320 WQVKSGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDKADKEQRKEEEEAKKASAEEE 381 (406)
T ss_pred EEeecceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhhhhhhcchhHHhhhcCchhhh
Confidence 99999999999999999999999999999999999999998876544 4555555544443
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=9.3e-111 Score=838.88 Aligned_cols=290 Identities=57% Similarity=1.069 Sum_probs=221.7
Q ss_pred eeeeccCCCC--CCCCeEeCccccCC---CCcCeEEEeccccCC-CCCCceeeeCccccceeecccCC-CcCCCCCceEE
Q 045396 25 VFFEERFDDG--WESRWVTSDWKKDE---NTAGEWNYTAGKWNG-DPNDKGIQTSEDYRFYAISAEFP-EFSNKDKTLVF 97 (399)
Q Consensus 25 v~F~E~F~~~--w~~rWv~S~~kk~~---~~~G~w~~~~g~~~g-~~~D~GL~t~~~ak~yaIsa~l~-~f~~~~k~LVv 97 (399)
|||+|+|+++ |.+|||+|++++++ .+.|+|++++|++++ ..+|+||||+++|||||||++|+ +|++++|+|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 7999999975 99999999999874 678999999997764 56799999999999999999998 59999999999
Q ss_pred EEEEecccccccCceeEEeccCCCCCC-CcCCCCCeeEEEecCCCCCCCCeEEEEEeeCC-------cccccccCCCCCC
Q 045396 98 QFSVKHEQKLDCGGGYMKLLSGEVDQK-KFGGDTPYSIMFGPDICGYSTKKVHAILTYNG-------TNKLIKKEVPCET 169 (399)
Q Consensus 98 QYeVK~e~~idCGGaYIKLl~~~~d~~-~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~-------~~~~~kk~~~~~~ 169 (399)
|||||||++|+|||||||||+.+.++. +|+++|||+||||||+|| .+++|||||||++ ++|+.++++.+.+
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~ 159 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT 159 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence 999999999999999999999998887 999999999999999999 6677999997753 4677778888899
Q ss_pred CCccceEEEEeCCCCceEEEECceeeccCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCC------
Q 045396 170 DQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWD--LLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYD------ 241 (399)
Q Consensus 170 D~~tHLYTLIi~pdntyeI~ID~~~~~~Gsl~~Dwd--~~pp~~I~Dp~d~KPeDWdd~~~I~DP~a~KPeDWD------ 241 (399)
|++||||||||||||||+|+|||+++.+|||.+||+ ++||++|+||+++||+||+|+++|+||+|+||+|||
T Consensus 160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~ 239 (367)
T PF00262_consen 160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF 239 (367)
T ss_dssp SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCC------------------CCCCCCCCC------
Q 045396 242 --------------DIPKEITDPDAKKPDDWDDEEDGEWTAPTIPNP------------------EYKGPWKPK------ 283 (399)
Q Consensus 242 --------------dep~~IpDP~a~KPedwd~~~dGeW~pp~I~NP------------------~YkG~WkP~------ 283 (399)
++|++|+||+|+||++||+++||+|+||||+|| +|||+|+|+
T Consensus 240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~ 319 (367)
T PF00262_consen 240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN 319 (367)
T ss_dssp EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence 689999999999999999999999999999888 888888877
Q ss_pred ----------CCCCC------CCCCCcceEeEEEeEeecCceeeeEEE
Q 045396 284 ----------DDPDL------YVYPNLKYVGIELWQVKSGTMFDNVLV 315 (399)
Q Consensus 284 ----------~dp~~------~~~~~i~~vG~ElW~~~~g~~FDNili 315 (399)
+||+| |.+.+|++||||||||++|++||||||
T Consensus 320 YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 320 YKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp ---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred ccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 56654 457899999999999999999999998
No 3
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-102 Score=791.49 Aligned_cols=312 Identities=44% Similarity=0.834 Sum_probs=282.5
Q ss_pred eeccCCCC--CCCCeEeCccccCC------CCcCeEEEeccccCCCCCCceeeeCccccceeecccCC-CcCCCCCceEE
Q 045396 27 FEERFDDG--WESRWVTSDWKKDE------NTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFP-EFSNKDKTLVF 97 (399)
Q Consensus 27 F~E~F~~~--w~~rWv~S~~kk~~------~~~G~w~~~~g~~~g~~~D~GL~t~~~ak~yaIsa~l~-~f~~~~k~LVv 97 (399)
|.++|+.+ |. |||.|.+||++ .|.|.|.+..++-.+.++|+||++++.|||||||+.|. ||+++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 66778864 45 89999998874 37899999999877888999999999999999999997 69999999999
Q ss_pred EEEEecccccccCceeEEeccCC---CCCCCcCCCCCeeEEEecCCCCCCCCeEEEEEeeCC-c-----ccccccCCC--
Q 045396 98 QFSVKHEQKLDCGGGYMKLLSGE---VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNG-T-----NKLIKKEVP-- 166 (399)
Q Consensus 98 QYeVK~e~~idCGGaYIKLl~~~---~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~-~-----~~~~kk~~~-- 166 (399)
|||||+|+|++|||||||||++. .++++|+++|||+||||||+|| .+++|||||+|++ . +|+.+.++.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l 200 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSL 200 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccC-CcccEEEEEeeccCCCCeeehhhccCCCccc
Confidence 99999999999999999999993 6789999999999999999999 9999999999974 2 455566654
Q ss_pred --CCCCCccceEEEEeCCCCceEEEECceeeccCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 045396 167 --CETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWD--LLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDD 242 (399)
Q Consensus 167 --~~~D~~tHLYTLIi~pdntyeI~ID~~~~~~Gsl~~Dwd--~~pp~~I~Dp~d~KPeDWdd~~~I~DP~a~KPeDWDd 242 (399)
..+|++||||||||+|||||+|||||++|..|||.+|+. ++||++|+||++.||+||++|+.||||+|+||+|||+
T Consensus 201 ~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE 280 (558)
T KOG0675|consen 201 KKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDE 280 (558)
T ss_pred ccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCc
Confidence 568999999999999999999999999999999999996 8999999999999999999999999999999999995
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCcccCCC--------------------------------
Q 045396 243 --------------------IPKEITDPDAKKPDDWDDEEDGEWTAPT-------------------------------- 270 (399)
Q Consensus 243 --------------------ep~~IpDP~a~KPedwd~~~dGeW~pp~-------------------------------- 270 (399)
+|.+|+||+|+||+|||+++||+|+|||
T Consensus 281 ~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~p 360 (558)
T KOG0675|consen 281 DAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILP 360 (558)
T ss_pred CCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccc
Confidence 6899999999999999999999888764
Q ss_pred -CCCCCCCCCCCCC--CCCCCC------CCCCcceEeEEEeEeecCceeeeEEEcCCHHHHHHHHHHhhccchhHHHHH
Q 045396 271 -IPNPEYKGPWKPK--DDPDLY------VYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKHKDAEKAA 340 (399)
Q Consensus 271 -I~NP~YkG~WkP~--~dp~~~------~~~~i~~vG~ElW~~~~g~~FDNili~dd~~~A~~~~~~t~~~k~~~E~~~ 340 (399)
|.||+|+|.|+|| +||+|| .+.+|.+||||||+|+++++|||||||+|++.|+.+++.||..|..+|++.
T Consensus 361 mI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~ 439 (558)
T KOG0675|consen 361 MIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK 439 (558)
T ss_pred cccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence 4566777777777 899987 468999999999999999999999999999999999999999996666543
No 4
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.78 E-value=1.3e-20 Score=189.96 Aligned_cols=86 Identities=48% Similarity=0.910 Sum_probs=46.1
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CccCCCCCCCCCCCCC------CCCCCCCCCCCC--------CCCC
Q 045396 195 KQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDK--EYIPDPEDKKPEGYDD------IPKEITDPDAKK--------PDDW 258 (399)
Q Consensus 195 ~~~Gsl~~Dwd~~pp~~I~Dp~d~KPeDWdd~--~~I~DP~a~KPeDWDd------ep~~IpDP~a~K--------Pedw 258 (399)
.....+++||+...|.+|+||++.||++|++. ++||||+|+||+|||+ ++++|+||.|.. |..-
T Consensus 223 Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~ 302 (367)
T PF00262_consen 223 DPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIK 302 (367)
T ss_dssp -SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE
T ss_pred CccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCcccccccccc
Confidence 35667899999888999999999999999884 8999999999999997 699999997774 6788
Q ss_pred CCCCCCcccCCCCCCCCCCCCC
Q 045396 259 DDEEDGEWTAPTIPNPEYKGPW 280 (399)
Q Consensus 259 d~~~dGeW~pp~I~NP~YkG~W 280 (399)
|++|.|+|+||||+||+|+|.|
T Consensus 303 Np~YkG~W~pp~I~NP~YkG~W 324 (367)
T PF00262_consen 303 NPNYKGKWKPPMIPNPNYKGEW 324 (367)
T ss_dssp -TT--SS----EEE-TT---S-
T ss_pred CccccCCccccccCCccccccc
Confidence 8899999999999999999999
No 5
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.5e-17 Score=171.93 Aligned_cols=178 Identities=27% Similarity=0.428 Sum_probs=128.0
Q ss_pred CCceEEEEEEecccccccCceeEEeccC--CCCCC-CcCCCCC--eeEEEecCCCCCCCCeEEEEEeeCCc----ccccc
Q 045396 92 DKTLVFQFSVKHEQKLDCGGGYMKLLSG--EVDQK-KFGGDTP--YSIMFGPDICGYSTKKVHAILTYNGT----NKLIK 162 (399)
Q Consensus 92 ~k~LVvQYeVK~e~~idCGGaYIKLl~~--~~d~~-~f~~~Tp--Y~IMFGPD~CG~~~~kvHfI~~~~~~----~~~~k 162 (399)
|.+.-|||-.||-+.++ |-|.--+-. ..+++ -|.+.-+ |+++.-||.-= ....-|-+++..+. .+.++
T Consensus 169 G~~~kvhFIf~hknp~t--G~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~pd~sf-eI~vDg~vv~~G~ll~Df~Ppv~ 245 (558)
T KOG0675|consen 169 GETNKVHFIFRHKNPIT--GEISEKHLKAPPSSLKKPFDDKLTHLYTLVLKPDNTF-EIRVDGKVVYKGSLLTDFEPPVT 245 (558)
T ss_pred CCcccEEEEEeeccCCC--CeeehhhccCCCcccccccccCCceeEEEEecCCCeE-EEEecCcEEEecccccccCCCCC
Confidence 57788999999999998 776543322 23443 3433333 99999997641 32233333333221 22233
Q ss_pred cCCCC--CCCCccceEEEEeCCCCceEEEECceeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CccCCCCCCCCC
Q 045396 163 KEVPC--ETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDK--EYIPDPEDKKPE 238 (399)
Q Consensus 163 k~~~~--~~D~~tHLYTLIi~pdntyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~Dp~d~KPeDWdd~--~~I~DP~a~KPe 238 (399)
.+..+ ..|.+.|-+.- +.+| ...++.+++|||...|.+|+|+++.||++|.+. ++|+||+|+||+
T Consensus 246 Pp~eI~Dp~d~KP~dWDe--------r~kI---pDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPe 314 (558)
T KOG0675|consen 246 PPKEIPDPSDKKPEDWDE--------RAKI---PDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPE 314 (558)
T ss_pred CccccCCcccCCccchhh--------hhcC---CCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCC
Confidence 33322 35666655543 2334 567788999999999999999999999999994 799999999999
Q ss_pred CCCC-------------------------CCCCCCCCCCC----CCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 045396 239 GYDD-------------------------IPKEITDPDAK----KPDDWDDEEDGEWTAPTIPNPEYKGPWKPK 283 (399)
Q Consensus 239 DWDd-------------------------ep~~IpDP~a~----KPedwd~~~dGeW~pp~I~NP~YkG~WkP~ 283 (399)
|||+ .|+||.||+++ -|+.-|+++.|+|.|+.|+||+|...-+|-
T Consensus 315 dWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~ 388 (558)
T KOG0675|consen 315 DWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPF 388 (558)
T ss_pred CCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcc
Confidence 9996 25666777666 378999999999999999999999999995
No 6
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7e-18 Score=166.67 Aligned_cols=83 Identities=42% Similarity=0.806 Sum_probs=66.9
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC------CCCCCCCCCCC---CCC-CCCCCCC
Q 045396 194 EKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDD------IPKEITDPDAK---KPD-DWDDEED 263 (399)
Q Consensus 194 ~~~~Gsl~~Dwd~~pp~~I~Dp~d~KPeDWdd~~~I~DP~a~KPeDWDd------ep~~IpDP~a~---KPe-dwd~~~d 263 (399)
...++++++||+. ...|+||+++||+||+-.++||||+|+||+|||+ +|||||||.++ ||. .-|+.+.
T Consensus 210 kdP~a~KPedWDe--r~~I~DpeD~Kp~dwe~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yK 287 (406)
T KOG0674|consen 210 KDPDAKKPEDWDE--REYIPDPEDKKPQDWEKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYK 287 (406)
T ss_pred CCccccCcccchh--hccCCCccccCccccccccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCcccc
Confidence 4567889999997 7799999999999999999999999999999997 69999999987 443 3344555
Q ss_pred CcccCCCCCCCCCCC
Q 045396 264 GEWTAPTIPNPEYKG 278 (399)
Q Consensus 264 GeW~pp~I~NP~YkG 278 (399)
|.|.+|+|.||.|..
T Consensus 288 g~w~hp~i~npey~~ 302 (406)
T KOG0674|consen 288 GKWIHPEIDNPEYPD 302 (406)
T ss_pred ceeeccccCCCcCCC
Confidence 666666666665554
No 7
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=70.20 E-value=71 Score=32.46 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=20.9
Q ss_pred CccceEEEEeCCCCceEEEECceeecc
Q 045396 171 QLTHVYTFILRPDATYSILIDNAEKQS 197 (399)
Q Consensus 171 ~~tHLYTLIi~pdntyeI~ID~~~~~~ 197 (399)
.--|.|++.-.|+ ....+|||+++..
T Consensus 141 ~dFHtYsI~Wtp~-~I~wyVDG~~iRt 166 (291)
T PLN03161 141 ADFHNYTIHWNPS-EVVWYVDGTPIRV 166 (291)
T ss_pred cCcEEEEEEEchh-hEEEEECCEEEEE
Confidence 4469999999877 4578899998874
No 8
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=64.86 E-value=49 Score=29.26 Aligned_cols=139 Identities=10% Similarity=0.112 Sum_probs=65.1
Q ss_pred cCCCCCCCCeEeCccccCCCCcCeEEEeccccC---CCCCCceeeeCccccceeecccCCCcCCCCCceEEEEEEecccc
Q 045396 30 RFDDGWESRWVTSDWKKDENTAGEWNYTAGKWN---GDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQK 106 (399)
Q Consensus 30 ~F~~~w~~rWv~S~~kk~~~~~G~w~~~~g~~~---g~~~D~GL~t~~~ak~yaIsa~l~~f~~~~k~LVvQYeVK~e~~ 106 (399)
=|+..-.+.|...... ...+.|.+..|... ......|++++. ..| ++++|+.++|+..
T Consensus 5 lf~g~~l~gW~~~~~~---~~~~~~~v~dG~l~~~~~~~~~~~~l~~~-----------~~~----~df~l~~d~k~~~- 65 (185)
T PF06439_consen 5 LFNGKDLDGWKIYGGG---WFEGGWSVKDGVLVSNGSSGSGGGYLYTD-----------KKF----SDFELEVDFKITP- 65 (185)
T ss_dssp SS-SSCGTTEEETTSS---SETTTEEEETTEEE-GGGGESSS--EEES-----------SEB----SSEEEEEEEEE-T-
T ss_pred eECCCCHHHCeeCCCC---ccccCcEeeCCEEEecccCCCCcceEEEC-----------Ccc----ccEEEEEEEEECC-
Confidence 3665456889877522 22477877777654 111122322221 112 5589999999832
Q ss_pred cccCceeEEeccCCCCCCCcCCCCCeeEEEecCCCCCCCCeEEEEEee-CCccc-----ccccCCC-CCCCCccceEEEE
Q 045396 107 LDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTY-NGTNK-----LIKKEVP-CETDQLTHVYTFI 179 (399)
Q Consensus 107 idCGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~-~~~~~-----~~kk~~~-~~~D~~tHLYTLI 179 (399)
.|.+=|-+.... .........-|++-..+..++ . .+.+ .+... ....... ...-..-|=|+++
T Consensus 66 --~~~sGi~~r~~~-~~~~~~~~~gy~~~i~~~~~~-~------~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~ 135 (185)
T PF06439_consen 66 --GGNSGIFFRAQS-PGDGQDWNNGYEFQIDNSGGG-T------GLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIV 135 (185)
T ss_dssp --T-EEEEEEEESS-ECCSSGGGTSEEEEEE-TTTC-S------TTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEE
T ss_pred --CCCeEEEEEecc-ccCCCCcceEEEEEEECCCCc-c------CCCCccceEEEeccccccccccccCCCCceEEEEEE
Confidence 223333333331 111222224478888887775 0 0001 12221 0111111 1223344555555
Q ss_pred eCCCCceEEEECceeeccC
Q 045396 180 LRPDATYSILIDNAEKQSG 198 (399)
Q Consensus 180 i~pdntyeI~ID~~~~~~G 198 (399)
++ .+++.+.|||+.|..-
T Consensus 136 ~~-g~~i~v~vnG~~v~~~ 153 (185)
T PF06439_consen 136 VK-GNRITVWVNGKPVADF 153 (185)
T ss_dssp EE-TTEEEEEETTEEEEEE
T ss_pred EE-CCEEEEEECCEEEEEE
Confidence 54 6789999999987653
No 9
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=41.94 E-value=35 Score=28.90 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=24.9
Q ss_pred CCceEEEEEEecccccccCceeEEeccCC
Q 045396 92 DKTLVFQFSVKHEQKLDCGGGYMKLLSGE 120 (399)
Q Consensus 92 ~k~LVvQYeVK~e~~idCGGaYIKLl~~~ 120 (399)
.|..|||=.|+ ..+--.||||+.||...
T Consensus 5 ~ke~VItG~V~-~~G~Pv~gAyVRLLD~s 32 (85)
T PF07210_consen 5 EKETVITGRVT-RDGEPVGGAYVRLLDSS 32 (85)
T ss_pred cceEEEEEEEe-cCCcCCCCeEEEEEcCC
Confidence 57899999999 78888899999999874
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.93 E-value=23 Score=30.15 Aligned_cols=16 Identities=31% Similarity=0.274 Sum_probs=7.0
Q ss_pred CCCcChhHHHHHHHHHH
Q 045396 1 MAKLNPSFLSLTLLTIF 17 (399)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (399)
|++ +..+++.|+|++|
T Consensus 1 MaS-K~~llL~l~LA~l 16 (95)
T PF07172_consen 1 MAS-KAFLLLGLLLAAL 16 (95)
T ss_pred Cch-hHHHHHHHHHHHH
Confidence 663 3344444444444
No 11
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=34.17 E-value=44 Score=26.59 Aligned_cols=22 Identities=5% Similarity=0.074 Sum_probs=17.1
Q ss_pred EEEEeCCCCceEEEECceeecc
Q 045396 176 YTFILRPDATYSILIDNAEKQS 197 (399)
Q Consensus 176 YTLIi~pdntyeI~ID~~~~~~ 197 (399)
.+|+.-..+.|||.+||+.|-+
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~S 56 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFS 56 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEE
T ss_pred EEEEeccCCEEEEEEccEEEEE
Confidence 4566677999999999998864
No 12
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=33.11 E-value=1.4e+02 Score=27.76 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=40.0
Q ss_pred ccccCceeEEeccCCCCCCCcCCCCCeeEEEecCCCCCCCCeEEEEEeeCCcccccccCCCCCCCCccceEEEEeCCCCc
Q 045396 106 KLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAT 185 (399)
Q Consensus 106 ~idCGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~kk~~~~~~D~~tHLYTLIi~pdnt 185 (399)
.-+||-.||--|....-...+.-. -|+|+..|.+-. -...++......+. -|+- +.|+|
T Consensus 5 keeCgtsFvmWf~~GtpvaTlkcg-~YTiVyAP~k~~------------------t~PaPrYISGev~~-VtFe-ksd~T 63 (165)
T PF11025_consen 5 KEECGTSFVMWFGEGTPVATLKCG-DYTIVYAPEKDQ------------------TDPAPRYISGEVKS-VTFE-KSDST 63 (165)
T ss_pred hhhcceeEEEEecCCcceEEEecC-CEEEEEccccCC------------------CCCCCceeecceEE-EEEe-ccCCe
Confidence 457999999888775322222221 267777766531 11222222222222 1232 36899
Q ss_pred eEEEECceeeccC
Q 045396 186 YSILIDNAEKQSG 198 (399)
Q Consensus 186 yeI~ID~~~~~~G 198 (399)
..|+|||+....=
T Consensus 64 vkIkvd~kefstl 76 (165)
T PF11025_consen 64 VKIKVDGKEFSTL 76 (165)
T ss_pred EEEEECCeEcccc
Confidence 9999999876543
No 13
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=31.14 E-value=42 Score=28.42 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=23.0
Q ss_pred ccceEEEEeCCCCceEEEECceeeccCC
Q 045396 172 LTHVYTFILRPDATYSILIDNAEKQSGS 199 (399)
Q Consensus 172 ~tHLYTLIi~pdntyeI~ID~~~~~~Gs 199 (399)
.+-.|||.+..|+.+++.|||+.+....
T Consensus 58 ~~G~y~f~~~~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 58 ETGTYTFSLTSDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSEEEEEEEEESSEEEEEETTEEEEECS
T ss_pred cCceEEEEEEecccEEEEECCEEEEcCC
Confidence 3456999999999999999999885443
No 14
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=30.59 E-value=1.9e+02 Score=27.64 Aligned_cols=106 Identities=13% Similarity=0.188 Sum_probs=64.1
Q ss_pred cceeecccCCC-cCCCCCceEEEEEEecccccccCceeEEeccCCCCCCCcCCCCCeeEEE-ecCCCCCCCCeEEEEEee
Q 045396 77 RFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMF-GPDICGYSTKKVHAILTY 154 (399)
Q Consensus 77 k~yaIsa~l~~-f~~~~k~LVvQYeVK~e~~idCGGaYIKLl~~~~d~~~f~~~TpY~IMF-GPD~CG~~~~kvHfI~~~ 154 (399)
..+-||..++. -....-+++|-|..-...++-| ||+-.-+.... -|--|+ -+.+|| +-+|-
T Consensus 18 ~~~dls~~l~~lk~L~~gTI~i~Fk~~~~~~~~s------LfsiSn~~~~n----~YF~lyv~~~~~G-------~E~R~ 80 (190)
T PF02973_consen 18 QRVDLSEDLSKLKKLEEGTIVIRFKSDSNSGIQS------LFSISNSTKGN----EYFSLYVSNNKLG-------FELRD 80 (190)
T ss_dssp CCEE-CCSCCHCCT-SSEEEEEEEEESS-SSEEE------EEEEE-TSTTS----EEEEEEEETTEEE-------EEEEE
T ss_pred CcccccchhHHHhcccccEEEEEEecCCCcceeE------EEEecCCCCcc----ceEEEEEECCEEE-------EEEec
Confidence 44677777765 3345578999999855556654 77653222111 465555 333555 66776
Q ss_pred CC--cccccccCCCC----CCCCccceEEEEeC-CCCceEEEECceeeccCC
Q 045396 155 NG--TNKLIKKEVPC----ETDQLTHVYTFILR-PDATYSILIDNAEKQSGS 199 (399)
Q Consensus 155 ~~--~~~~~kk~~~~----~~D~~tHLYTLIi~-pdntyeI~ID~~~~~~Gs 199 (399)
.. .++..-.+..+ ..+...|.-++... |+..|.+++||+.+..-+
T Consensus 81 ~~~~~~y~~~~~~~v~~~~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~ 132 (190)
T PF02973_consen 81 TKGNQNYNFSRPAKVRGGYKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLS 132 (190)
T ss_dssp TTTTCEEEEEESSE--SEETTEES-EEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred CCCCcccccccccEecccccCCceEEEEEEEEecCCCeEEEEeCCeeEEEec
Confidence 42 34544444433 45667888899888 899999999997776543
No 15
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=26.96 E-value=1.8e+02 Score=30.68 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEeEeecC-----ceeeeEEEcCCHHHHHHHHHHhhccchhHHH
Q 045396 299 IELWQVKSG-----TMFDNVLVSDDPEYAKKLAEETWGKHKDAEK 338 (399)
Q Consensus 299 ~ElW~~~~g-----~~FDNili~dd~~~A~~~~~~t~~~k~~~E~ 338 (399)
++|=-+..| ++|.- +|..++++-+.+-+..=..++..|+
T Consensus 294 lqLvKIeEGi~~GkVlyH~-hv~Kt~eEi~~l~~~~ekk~~lKeq 337 (405)
T KOG2963|consen 294 LQLVKIEEGICEGKVLYHE-HVQKTEEEIKALRKRHEKKRRLKEQ 337 (405)
T ss_pred EEEEEeeccccccceEEee-hhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 45544 3556667766654443333344443
No 16
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1IZ5_A 1IZ4_A 1GE8_A 1ISQ_A 3A2F_B 1RWZ_A 3P83_A 1RXM_A 1RXZ_A 1SXJ_F ....
Probab=21.95 E-value=96 Score=26.95 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=17.5
Q ss_pred CCCceEEEEEEecccccccCceeEEecc
Q 045396 91 KDKTLVFQFSVKHEQKLDCGGGYMKLLS 118 (399)
Q Consensus 91 ~~k~LVvQYeVK~e~~idCGGaYIKLl~ 118 (399)
.+.||.|+|++ .+||+|+++=
T Consensus 105 ~~~Pl~l~f~~-------~~~g~l~f~L 125 (128)
T PF02747_consen 105 EDMPLKLEFEL-------ADGGSLKFYL 125 (128)
T ss_dssp TTSEEEEEEEE-------TTTEEEEEEE
T ss_pred CCCCEEEEEEe-------CCCeEEEEEE
Confidence 47899999998 4789999873
No 17
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=21.47 E-value=67 Score=26.22 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=15.6
Q ss_pred CCCcChhHHHHHHHHHHhhh
Q 045396 1 MAKLNPSFLSLTLLTIFLTI 20 (399)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (399)
|++++.+.+.+|||+.++++
T Consensus 1 mnn~Si~VLlaLvLIg~fAV 20 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAV 20 (71)
T ss_pred CCchhHHHHHHHHHHhhhee
Confidence 78888888888888766543
Done!