Query 045398
Match_columns 162
No_of_seqs 116 out of 1623
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:50:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 1.2E-40 2.6E-45 270.3 13.2 154 3-160 345-499 (499)
2 KOG0156 Cytochrome P450 CYP2 s 100.0 3.4E-39 7.3E-44 263.4 13.6 153 2-160 336-488 (489)
3 PLN03234 cytochrome P450 83B1; 100.0 4.5E-39 9.7E-44 264.4 14.2 158 2-159 338-498 (499)
4 PLN02183 ferulate 5-hydroxylas 100.0 1.5E-38 3.2E-43 262.5 14.2 157 2-159 354-511 (516)
5 PLN02394 trans-cinnamate 4-mon 100.0 1.6E-38 3.4E-43 261.3 14.2 157 2-160 343-502 (503)
6 PLN02971 tryptophan N-hydroxyl 100.0 2E-38 4.3E-43 263.2 13.9 156 1-159 376-533 (543)
7 PLN02966 cytochrome P450 83A1 100.0 3.4E-38 7.3E-43 259.5 14.4 157 2-158 341-498 (502)
8 PLN02169 fatty acid (omega-1)- 100.0 3.1E-38 6.8E-43 259.8 13.7 151 3-159 346-499 (500)
9 PTZ00404 cytochrome P450; Prov 100.0 4.1E-38 9E-43 257.7 14.2 149 2-159 333-482 (482)
10 PLN00168 Cytochrome P450; Prov 100.0 4.1E-38 8.9E-43 260.0 13.8 156 2-160 357-517 (519)
11 PLN00110 flavonoid 3',5'-hydro 100.0 5E-38 1.1E-42 258.8 13.9 156 2-160 339-497 (504)
12 PLN03195 fatty acid omega-hydr 100.0 4.2E-38 9.2E-43 259.7 12.8 152 3-160 363-516 (516)
13 PLN02687 flavonoid 3'-monooxyg 100.0 7.4E-38 1.6E-42 258.4 14.0 159 2-160 347-509 (517)
14 PLN02738 carotene beta-ring hy 100.0 1E-37 2.2E-42 262.4 14.7 154 2-160 440-595 (633)
15 PF00067 p450: Cytochrome P450 100.0 2.4E-38 5.3E-43 253.3 10.2 151 3-156 313-463 (463)
16 KOG0157 Cytochrome P450 CYP4/C 100.0 5.7E-38 1.2E-42 257.9 12.3 146 10-161 350-497 (497)
17 PLN02500 cytochrome P450 90B1 100.0 1.3E-37 2.9E-42 255.3 13.7 149 2-158 334-488 (490)
18 PLN03112 cytochrome P450 famil 100.0 1.9E-37 4.2E-42 255.6 14.5 160 2-161 346-509 (514)
19 PLN02426 cytochrome P450, fami 100.0 1.5E-37 3.2E-42 255.9 13.7 155 2-160 344-500 (502)
20 PLN02290 cytokinin trans-hydro 100.0 1.7E-37 3.8E-42 255.9 13.5 150 2-160 365-515 (516)
21 KOG0159 Cytochrome P450 CYP11/ 100.0 1.4E-37 3.1E-42 249.5 11.0 151 3-160 368-518 (519)
22 PLN02774 brassinosteroid-6-oxi 100.0 4E-37 8.6E-42 251.0 13.3 146 2-158 317-462 (463)
23 PLN02655 ent-kaurene oxidase 100.0 5.7E-37 1.2E-41 250.2 13.6 154 3-161 312-465 (466)
24 PLN03141 3-epi-6-deoxocathaste 100.0 7E-37 1.5E-41 248.8 13.0 146 2-160 305-450 (452)
25 PLN03018 homomethionine N-hydr 100.0 1.6E-36 3.5E-41 251.3 15.0 156 2-160 364-524 (534)
26 PLN02936 epsilon-ring hydroxyl 100.0 2.8E-36 6E-41 247.6 13.5 154 2-160 327-482 (489)
27 PLN02196 abscisic acid 8'-hydr 100.0 1.8E-36 4E-41 247.1 12.3 146 2-159 317-462 (463)
28 PLN02302 ent-kaurenoic acid ox 100.0 4E-36 8.8E-41 246.0 12.9 148 3-161 342-489 (490)
29 PLN02987 Cytochrome P450, fami 100.0 9.8E-36 2.1E-40 243.5 14.2 150 3-161 321-470 (472)
30 KOG0684 Cytochrome P450 [Secon 100.0 3.3E-36 7.2E-41 237.6 10.4 153 3-160 325-485 (486)
31 PLN02648 allene oxide synthase 100.0 6.8E-31 1.5E-35 215.1 10.7 125 2-130 324-462 (480)
32 COG2124 CypX Cytochrome P450 [ 100.0 1.1E-29 2.4E-34 204.7 10.5 131 12-159 280-410 (411)
33 PF12508 DUF3714: Protein of u 69.6 1.5 3.3E-05 32.3 0.0 41 12-55 53-94 (200)
34 PF09201 SRX: SRX; InterPro: 66.6 5.2 0.00011 27.6 2.1 23 101-123 19-41 (148)
35 PF08492 SRP72: SRP72 RNA-bind 57.6 4.3 9.2E-05 23.8 0.4 7 74-80 44-50 (59)
36 PF11138 DUF2911: Protein of u 47.2 30 0.00065 24.2 3.3 21 37-57 53-73 (145)
37 TIGR03779 Bac_Flav_CT_M Bacter 43.8 7.7 0.00017 31.8 0.0 42 12-56 256-298 (410)
38 cd04518 TBP_archaea archaeal T 43.4 14 0.0003 26.6 1.3 36 71-106 29-64 (174)
39 PF12444 Sox_N: Sox developmen 41.6 17 0.00038 22.9 1.4 21 110-130 60-80 (84)
40 COG2101 SPT15 TATA-box binding 38.5 23 0.00051 25.5 1.7 36 71-106 35-70 (185)
41 PF15300 INT_SG_DDX_CT_C: INTS 36.8 18 0.00038 21.6 0.8 14 12-25 41-54 (65)
42 PRK06789 flagellar motor switc 36.8 36 0.00078 20.9 2.2 41 17-57 21-63 (74)
43 PRK00394 transcription factor; 35.5 24 0.00052 25.5 1.5 35 71-105 28-62 (179)
44 PF14550 Peptidase_U35_2: Puta 31.6 37 0.00079 23.0 1.8 21 35-55 72-92 (122)
45 PF11227 DUF3025: Protein of u 28.4 36 0.00079 25.3 1.4 19 59-77 193-211 (212)
46 COG1759 5-formaminoimidazole-4 28.2 1.4E+02 0.0029 24.0 4.6 26 88-116 326-351 (361)
47 KOG3506 40S ribosomal protein 27.8 27 0.00058 20.1 0.5 11 93-103 12-22 (56)
48 PLN00062 TATA-box-binding prot 26.9 34 0.00074 24.7 1.1 55 71-125 29-85 (179)
49 cd00652 TBP_TLF TATA box bindi 26.4 39 0.00084 24.2 1.3 56 71-127 29-87 (174)
50 cd04516 TBP_eukaryotes eukaryo 23.7 43 0.00092 24.1 1.1 56 71-126 29-86 (174)
51 PF02663 FmdE: FmdE, Molybdenu 21.4 68 0.0015 21.6 1.7 22 100-121 5-26 (131)
52 PHA03162 hypothetical protein; 20.2 86 0.0019 21.5 1.9 24 96-119 2-25 (135)
53 KOG3302 TATA-box binding prote 20.0 66 0.0014 23.7 1.4 36 71-106 50-85 (200)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-40 Score=270.35 Aligned_cols=154 Identities=35% Similarity=0.555 Sum_probs=137.7
Q ss_pred CCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceec-cEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 3 VEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVN-RFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 3 ~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~-~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
+|+|.+++|+||++||+||||+||+++... |.+++|++++ ++.|+||+.|.++.+++|+||++||||++|+||||.+.
T Consensus 345 ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~-R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~ 423 (499)
T KOG0158|consen 345 LTYDSLSKLKYLDMVIKETLRLYPPAPFLN-RECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEE 423 (499)
T ss_pred CCHHHHhCCcHHHHHHHHHHhhCCCccccc-ceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCC
Confidence 799999999999999999999999999954 9999999999 99999999999999999999999999999999999987
Q ss_pred CCCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeecc
Q 045398 82 SIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYRL 160 (162)
Q Consensus 82 ~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 160 (162)
+.. ...+..|+|||.|||+|+|.+||++|+|++|++||++|+|+..+.+ ... ......+.++.|++++++++++|+
T Consensus 424 ~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t-~~~-~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 424 NNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTT-IIP-LEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred ccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcc-cCc-ccCCccceeeecCCceEEEEEeCC
Confidence 644 4467799999999999999999999999999999999999998732 222 222223677899999999999985
No 2
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-39 Score=263.43 Aligned_cols=153 Identities=53% Similarity=0.959 Sum_probs=135.6
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++++|+.++||++|+|+|++|++|++|+..+|.+.+|+.|+||.|||||.|+++.|++|+||++|+||++|+||||+++
T Consensus 336 ~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~ 415 (489)
T KOG0156|consen 336 LVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDS 415 (489)
T ss_pred CCChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeecc
Q 045398 82 SIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYRL 160 (162)
Q Consensus 82 ~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 160 (162)
+ +.+.....++|||.|+|.|||..+|.+++.++++.++++|+|+++++ .+++... ++++....++.+...+|.
T Consensus 416 ~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~----~~d~~e~-~~~~~~~~pl~~~~~~r~ 488 (489)
T KOG0156|consen 416 N-DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG----KVDMEEA-GLTLKKKKPLKAVPVPRL 488 (489)
T ss_pred c-cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC----CCCCccc-ccceecCCcceeeeecCC
Confidence 5 22235779999999999999999999999999999999999999876 3344434 355666677777777664
No 3
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=4.5e-39 Score=264.38 Aligned_cols=158 Identities=42% Similarity=0.842 Sum_probs=137.1
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCC-CCCCCcCCCCcCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAW-NDPEIFFPERFVG 80 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~ 80 (162)
.++++++.+|||++|||+|+||++|+++....|.+.+|++++|+.|||||.|.++.+.+|+|+++| +||++|+|+||++
T Consensus 338 ~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~ 417 (499)
T PLN03234 338 YVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMK 417 (499)
T ss_pred CCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcC
Confidence 468899999999999999999999999987568888999999999999999999999999999999 8999999999997
Q ss_pred CCCC--CCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeee
Q 045398 81 SSID--LRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSY 158 (162)
Q Consensus 81 ~~~~--~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 158 (162)
+... ....+..++|||+|+|.|+|+++|++|++++++.|+++|+++++++..+.........++++++++++.+.+++
T Consensus 418 ~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (499)
T PLN03234 418 EHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTK 497 (499)
T ss_pred CCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeec
Confidence 5432 12346689999999999999999999999999999999999998764444455555667777888888777776
Q ss_pred c
Q 045398 159 R 159 (162)
Q Consensus 159 r 159 (162)
|
T Consensus 498 ~ 498 (499)
T PLN03234 498 H 498 (499)
T ss_pred C
Confidence 5
No 4
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=1.5e-38 Score=262.48 Aligned_cols=157 Identities=57% Similarity=1.081 Sum_probs=133.9
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++++++++|||++|||+|+||++|+++... |.+.+|++++|+.|||||.|.++.+++|+|+++|+||++|+||||+++
T Consensus 354 ~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~-r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~ 432 (516)
T PLN02183 354 RVEESDLEKLTYLKCTLKETLRLHPPIPLLL-HETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKP 432 (516)
T ss_pred CCCHHHhccChHHHHHHHHHhccCCCcccee-eeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCC
Confidence 4788999999999999999999999999976 889999999999999999999999999999999999999999999975
Q ss_pred CCCC-CCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeec
Q 045398 82 SIDL-RGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYR 159 (162)
Q Consensus 82 ~~~~-~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 159 (162)
+... ....+.++|||.|+|.|+|++||++|++++++.|+++|++++.++......+....++.+.+..+++.+.+++|
T Consensus 433 ~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 433 GVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR 511 (516)
T ss_pred CCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence 4321 12456899999999999999999999999999999999999877642222343334455555666888888877
No 5
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=1.6e-38 Score=261.35 Aligned_cols=157 Identities=42% Similarity=0.764 Sum_probs=134.1
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++++++++|||++|||+|+||++|+++...+|.+.+|++++||.||+||.|.++.+++|+|+++|+||++|+||||+++
T Consensus 343 ~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~ 422 (503)
T PLN02394 343 QVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEE 422 (503)
T ss_pred CCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCC
Confidence 46788999999999999999999999999877888899999999999999999999999999999999999999999975
Q ss_pred CCC--CCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccc-eeccCCCceeEEeee
Q 045398 82 SID--LRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFG-LVTPRAKHLLAIPSY 158 (162)
Q Consensus 82 ~~~--~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~ 158 (162)
+.. .......++|||.|+|.|+|++||++|++++++.++++|++++.++. +..+....++ +....+.+..+++.+
T Consensus 423 ~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (503)
T PLN02394 423 EAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQ--SKIDVSEKGGQFSLHIAKHSTVVFKP 500 (503)
T ss_pred CCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCC--CcCccccccCceeeccCCCceEEeec
Confidence 432 12245689999999999999999999999999999999999987663 1234443343 444355699999999
Q ss_pred cc
Q 045398 159 RL 160 (162)
Q Consensus 159 r~ 160 (162)
|.
T Consensus 501 r~ 502 (503)
T PLN02394 501 RS 502 (503)
T ss_pred CC
Confidence 86
No 6
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=2e-38 Score=263.19 Aligned_cols=156 Identities=34% Similarity=0.727 Sum_probs=133.4
Q ss_pred CCCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCC
Q 045398 1 RMVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVG 80 (162)
Q Consensus 1 r~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~ 80 (162)
+.++++++.+|||++|||+|+||++|+++...+|.+.+|++++||.||||+.|.++.+++|+|+++|+||++|+||||++
T Consensus 376 ~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~ 455 (543)
T PLN02971 376 RFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLN 455 (543)
T ss_pred CCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCC
Confidence 35788999999999999999999999999877799999999999999999999999999999999999999999999997
Q ss_pred CCCCC--CCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeee
Q 045398 81 SSIDL--RGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSY 158 (162)
Q Consensus 81 ~~~~~--~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 158 (162)
+.... ...++.++|||+|+|.|+|++||++|++++++.||++|+++++++. ...++....+ ++.-.+++.+.+++
T Consensus 456 ~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~ 532 (543)
T PLN02971 456 ECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSE--TRVELMESSH-DMFLSKPLVMVGEL 532 (543)
T ss_pred CCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCC--CCcchhhhcC-cccccccceeeeee
Confidence 54321 1245689999999999999999999999999999999999987653 2344444444 44334588888887
Q ss_pred c
Q 045398 159 R 159 (162)
Q Consensus 159 r 159 (162)
|
T Consensus 533 ~ 533 (543)
T PLN02971 533 R 533 (543)
T ss_pred c
Confidence 7
No 7
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=3.4e-38 Score=259.53 Aligned_cols=157 Identities=40% Similarity=0.830 Sum_probs=132.2
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCC-CCCCCcCCCCcCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAW-NDPEIFFPERFVG 80 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~ 80 (162)
.++++++++|||++||++|+||++|+++....|.+.+|++++|+.|||||.|.++.+++|+|+++| +||++|+||||++
T Consensus 341 ~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~ 420 (502)
T PLN02966 341 FVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLE 420 (502)
T ss_pred cCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcC
Confidence 368899999999999999999999999986669999999999999999999999999999999999 9999999999997
Q ss_pred CCCCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeee
Q 045398 81 SSIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSY 158 (162)
Q Consensus 81 ~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 158 (162)
+..........++|||.|+|.|+|++||++|++++++.|+++|++++.++......+.+...++...+.+.+.+..++
T Consensus 421 ~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (502)
T PLN02966 421 KEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPEK 498 (502)
T ss_pred CCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEEEEe
Confidence 543222345689999999999999999999999999999999999998775333455445555555444455554444
No 8
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=3.1e-38 Score=259.77 Aligned_cols=151 Identities=25% Similarity=0.472 Sum_probs=129.5
Q ss_pred CCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccce-eccEEeCCCcEEEeechhhccCCCCC-CCCCCcCCCCcCC
Q 045398 3 VEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCT-VNRFHIPKKSRVIINVWAIGRDPEAW-NDPEIFFPERFVG 80 (162)
Q Consensus 3 ~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~-i~~~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~ 80 (162)
++++++.+|||++||++|+||++|+++... |.+.+|.+ ++|+.||||+.|.++.+++|+|+++| +||++|+||||++
T Consensus 346 ~~~~dl~~L~Yl~avi~EtLRl~P~vp~~~-r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~ 424 (500)
T PLN02169 346 FDNEDLEKLVYLHAALSESMRLYPPLPFNH-KAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWIS 424 (500)
T ss_pred CCHHHHhcCHHHHHHHHHHHhcCCCCCcCc-eecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCC
Confidence 357899999999999999999999999987 66555544 59999999999999999999999999 8999999999997
Q ss_pred CCCCCC-CCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeec
Q 045398 81 SSIDLR-GHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYR 159 (162)
Q Consensus 81 ~~~~~~-~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 159 (162)
++.... ..++.|+|||+|+|.|+|++||++|++++++.|+++|+++++++. .+ ......++.|++++.|++++|
T Consensus 425 ~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~---~~--~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 425 DNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH---KI--EAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred CCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCC---Cc--ccccceEEecCCCEEEEEEeC
Confidence 543322 236789999999999999999999999999999999999987542 22 223456788999999999987
No 9
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=4.1e-38 Score=257.69 Aligned_cols=149 Identities=29% Similarity=0.549 Sum_probs=129.8
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeeccccee-ccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTV-NRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVG 80 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i-~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~ 80 (162)
.++++++++|||++||++|+||++|+++....|.+.+|+++ +|+.||||+.|.++.+++|+||++|+||++|+||||++
T Consensus 333 ~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~ 412 (482)
T PTZ00404 333 KVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLN 412 (482)
T ss_pred CCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCC
Confidence 46888999999999999999999999997656999999999 99999999999999999999999999999999999986
Q ss_pred CCCCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeec
Q 045398 81 SSIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYR 159 (162)
Q Consensus 81 ~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 159 (162)
.. .+..++|||+|+|.|+|++||++|++++++.++++|+++.++++ ........++++. +.++.|++++|
T Consensus 413 ~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~-~~~~~v~~~~R 482 (482)
T PTZ00404 413 PD-----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGK---KIDETEEYGLTLK-PNKFKVLLEKR 482 (482)
T ss_pred CC-----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCC---CCCcccccceeec-CCCceeeeecC
Confidence 42 35689999999999999999999999999999999999987653 2222223345566 56789999887
No 10
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=4.1e-38 Score=259.98 Aligned_cols=156 Identities=34% Similarity=0.597 Sum_probs=133.7
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++.+++.+|||++||++|++|++|+++....|.+.+|++++|+.||||+.|.++.+++|+|+++|+||++|+|+||++.
T Consensus 357 ~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~ 436 (519)
T PLN00168 357 EVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAG 436 (519)
T ss_pred CCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCC
Confidence 46889999999999999999999999988767999999999999999999999999999999999999999999999974
Q ss_pred CCC-----CCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEe
Q 045398 82 SID-----LRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIP 156 (162)
Q Consensus 82 ~~~-----~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 156 (162)
+.. ....++.++|||.|+|.|+|++||++|++++++.|+++|++++.++. ..+......++..+.+++.+++
T Consensus 437 ~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 513 (519)
T PLN00168 437 GDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGD---EVDFAEKREFTTVMAKPLRARL 513 (519)
T ss_pred CCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCC---cCChhhhceeEEeecCCcEEEE
Confidence 321 11234589999999999999999999999999999999999987652 2233222345566677899999
Q ss_pred eecc
Q 045398 157 SYRL 160 (162)
Q Consensus 157 ~~r~ 160 (162)
++|+
T Consensus 514 ~~R~ 517 (519)
T PLN00168 514 VPRR 517 (519)
T ss_pred Eecc
Confidence 9986
No 11
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=5e-38 Score=258.77 Aligned_cols=156 Identities=48% Similarity=0.932 Sum_probs=135.4
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++++++++|||++||++|+||++|+++....|.+.+|+.++||.||||+.|.++.+++|+|+++|+||++|+|+||+++
T Consensus 339 ~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~ 418 (504)
T PLN00110 339 RLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSE 418 (504)
T ss_pred CCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCC
Confidence 46889999999999999999999999998667999999999999999999999999999999999999999999999965
Q ss_pred CCCCC---CCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeee
Q 045398 82 SIDLR---GHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSY 158 (162)
Q Consensus 82 ~~~~~---~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 158 (162)
+.... .....++|||+|+|.|+|++||++|++++++.|+++|++++.++. ..+.....+++++|+.++.+++++
T Consensus 419 ~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 495 (504)
T PLN00110 419 KNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGV---ELNMDEAFGLALQKAVPLSAMVTP 495 (504)
T ss_pred CCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCC---ccCcccccccccccCCCceEeecc
Confidence 32211 123579999999999999999999999999999999999987653 233333446777889999999998
Q ss_pred cc
Q 045398 159 RL 160 (162)
Q Consensus 159 r~ 160 (162)
|.
T Consensus 496 r~ 497 (504)
T PLN00110 496 RL 497 (504)
T ss_pred CC
Confidence 84
No 12
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00 E-value=4.2e-38 Score=259.66 Aligned_cols=152 Identities=25% Similarity=0.364 Sum_probs=128.8
Q ss_pred CCccccCCCHHHHHHHhhhhcCCCCCCCCcceeeccccee-ccEEeCCCcEEEeechhhccCCCCC-CCCCCcCCCCcCC
Q 045398 3 VEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTV-NRFHIPKKSRVIINVWAIGRDPEAW-NDPEIFFPERFVG 80 (162)
Q Consensus 3 ~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i-~~~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~ 80 (162)
++++++.+|||++|||+|+||++|+++... |.+.+|.++ +|+.||||+.|.++.+++|+|+++| +||++|+||||++
T Consensus 363 ~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~-r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~ 441 (516)
T PLN03195 363 LTYDSLGKLQYLHAVITETLRLYPAVPQDP-KGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIK 441 (516)
T ss_pred CCHHHHhcCHHHHHHHHHHhhcCCCCcchh-hhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCC
Confidence 678899999999999999999999999886 656666555 9999999999999999999999999 9999999999996
Q ss_pred CCCCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeecc
Q 045398 81 SSIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYRL 160 (162)
Q Consensus 81 ~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 160 (162)
++......++.++|||+|+|.|+|++||++|++++++.|+++|++++.++. +... ....+..|.+++.|++++|+
T Consensus 442 ~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~--~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 442 DGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGH---PVKY--RMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred CCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCC---ccee--eeeeEEecCCCEEEEEEeCC
Confidence 432122345689999999999999999999999999999999999987542 2222 22345678899999999884
No 13
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=7.4e-38 Score=258.36 Aligned_cols=159 Identities=48% Similarity=0.939 Sum_probs=136.0
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++.+++.+|||++||++|+||++|+++....|.+.+|++++|+.||+|+.|.++.+++|+|+++|+||++|+|+||+++
T Consensus 347 ~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~ 426 (517)
T PLN02687 347 LVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPG 426 (517)
T ss_pred CCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCC
Confidence 46789999999999999999999999998666999999999999999999999999999999999999999999999975
Q ss_pred CCC----CCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEee
Q 045398 82 SID----LRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPS 157 (162)
Q Consensus 82 ~~~----~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 157 (162)
+.. ....+..++|||.|+|.|+|++||++|++++++.|+++|++++.++......+......+.+.+..++.++++
T Consensus 427 ~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (517)
T PLN02687 427 GEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPR 506 (517)
T ss_pred CCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeec
Confidence 321 1123558999999999999999999999999999999999999866432234433344556667778999999
Q ss_pred ecc
Q 045398 158 YRL 160 (162)
Q Consensus 158 ~r~ 160 (162)
+|.
T Consensus 507 ~R~ 509 (517)
T PLN02687 507 PRL 509 (517)
T ss_pred cCC
Confidence 884
No 14
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=1e-37 Score=262.38 Aligned_cols=154 Identities=29% Similarity=0.509 Sum_probs=133.8
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++++++++||||+|||+|+||++|+++... |.+.+|.+++||.|||||.|.++.+.+|+|+++|+||++|+||||+++
T Consensus 440 ~~t~edL~kLPYL~AVIkEtLRL~p~~p~~~-R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~ 518 (633)
T PLN02738 440 FPTIEDMKKLKYTTRVINESLRLYPQPPVLI-RRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLD 518 (633)
T ss_pred CCCHHHHccCHHHHHHHHHHHhcCCCccccc-eeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCC
Confidence 4688999999999999999999999999866 888999999999999999999999999999999999999999999854
Q ss_pred CC--CCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeec
Q 045398 82 SI--DLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYR 159 (162)
Q Consensus 82 ~~--~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 159 (162)
.. .....++.++|||.|+|.|+|++||++|++++++.|+++|+|++.++. .+ +....+.++.+.+++.+++++|
T Consensus 519 ~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~--~~--~~~~~~~~~~p~~~l~v~l~~R 594 (633)
T PLN02738 519 GPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGA--PP--VKMTTGATIHTTEGLKMTVTRR 594 (633)
T ss_pred CCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCC--CC--cccccceEEeeCCCcEEEEEEC
Confidence 22 122345689999999999999999999999999999999999997663 12 2222346677889999999998
Q ss_pred c
Q 045398 160 L 160 (162)
Q Consensus 160 ~ 160 (162)
.
T Consensus 595 ~ 595 (633)
T PLN02738 595 T 595 (633)
T ss_pred C
Confidence 6
No 15
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=2.4e-38 Score=253.28 Aligned_cols=151 Identities=39% Similarity=0.618 Sum_probs=124.5
Q ss_pred CCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCCC
Q 045398 3 VEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGSS 82 (162)
Q Consensus 3 ~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~ 82 (162)
++.+++++||||+|||+|++|++|+++....|.+.+|++++|+.||||+.|.++.+++|+|+++|+||++|+|+||++.+
T Consensus 313 ~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~ 392 (463)
T PF00067_consen 313 ITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDER 392 (463)
T ss_dssp HHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56788999999999999999999999966669999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEe
Q 045398 83 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIP 156 (162)
Q Consensus 83 ~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 156 (162)
.........++|||.|+|.|+|++||++|++++++.|+++|+++++++. ..........++.|+.+..|.+
T Consensus 393 ~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 463 (463)
T PF00067_consen 393 GISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGS---EPEPQEQQNGFLLPPKPLKVKF 463 (463)
T ss_dssp STBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTS---SGGEEECSCSSSEEESSSEEEE
T ss_pred cccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCC---CCCCccccCceEeeCCCcEEeC
Confidence 5223457799999999999999999999999999999999999997653 1222222213444455665543
No 16
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=5.7e-38 Score=257.95 Aligned_cols=146 Identities=34% Similarity=0.602 Sum_probs=132.1
Q ss_pred CCHHHHHHHhhhhcCCCCCCCCcceeecccceec-cEEeCCCcEEEeechhhccCCCCCC-CCCCcCCCCcCCCCCCCCC
Q 045398 10 NLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVN-RFHIPKKSRVIINVWAIGRDPEAWN-DPEIFFPERFVGSSIDLRG 87 (162)
Q Consensus 10 ~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~-~~~ip~g~~v~~~~~~~~~d~~~~~-~p~~f~p~R~~~~~~~~~~ 87 (162)
+|+|+++||+|+|||||++|... |.+.+|++++ ||.||||+.|.++.+++|||+++|+ ||++|||+||+++......
T Consensus 350 ~m~yl~~vi~EsLRLyppvp~~~-R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~ 428 (497)
T KOG0157|consen 350 QMKYLEMVIKESLRLYPPVPLVA-RKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKR 428 (497)
T ss_pred hhHHHHHHHHHHhccCCCCchhh-cccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCC
Confidence 59999999999999999999987 9999999994 8999999999999999999999997 9999999999976544345
Q ss_pred CCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeeccC
Q 045398 88 HDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYRLN 161 (162)
Q Consensus 88 ~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 161 (162)
.+++|+|||+|+|.|+|++||++|++++++.++++|++++..+.. .......++++++++.|++++|..
T Consensus 429 ~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~-----~~~~~~~~l~~~~gl~v~~~~r~~ 497 (497)
T KOG0157|consen 429 HPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDK-----PKPVPELTLRPKNGLKVKLRPRGS 497 (497)
T ss_pred CCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCC-----ceeeeEEEEEecCCeEEEEEeCCC
Confidence 578999999999999999999999999999999999999887631 445567889999999999999963
No 17
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=1.3e-37 Score=255.32 Aligned_cols=149 Identities=26% Similarity=0.379 Sum_probs=126.7
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++++++.+|||++|||+|+||++|+++... |.+.+|++++||.||||+.|.++.+++|+|+++|+||++|+|+||+++
T Consensus 334 ~~~~~d~~~lpyl~avikEtlRl~P~~~~~~-R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~ 412 (490)
T PLN02500 334 ELNWEDYKKMEFTQCVINETLRLGNVVRFLH-RKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQN 412 (490)
T ss_pred CCCHHHhccCHHHHHHHHHHHhcCCCccCee-eEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCC
Confidence 4688999999999999999999999999864 999999999999999999999999999999999999999999999975
Q ss_pred CCCCC------CCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEE
Q 045398 82 SIDLR------GHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAI 155 (162)
Q Consensus 82 ~~~~~------~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 155 (162)
+.... ..++.++|||+|+|.|+|++||++|++++++.|+++|++++.++.. ... . ..+ .+.+++.|+
T Consensus 413 ~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~----~~~-~-~~~-~~~~~l~~~ 485 (490)
T PLN02500 413 NNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQ----AFA-F-PFV-DFPKGLPIR 485 (490)
T ss_pred CcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCc----cee-c-ccc-cCCCCceEE
Confidence 42211 2356899999999999999999999999999999999999876531 111 1 222 334688888
Q ss_pred eee
Q 045398 156 PSY 158 (162)
Q Consensus 156 ~~~ 158 (162)
+++
T Consensus 486 ~~~ 488 (490)
T PLN02500 486 VRR 488 (490)
T ss_pred EEe
Confidence 765
No 18
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=255.59 Aligned_cols=160 Identities=47% Similarity=0.895 Sum_probs=137.1
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++++++++|||++|+|+|++|++|++++...|.+.+|+.++|+.||||+.|.++.+.+|+|+++|+||++|+|+||+.+
T Consensus 346 ~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~ 425 (514)
T PLN03112 346 MVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPA 425 (514)
T ss_pred cCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCC
Confidence 47889999999999999999999999998656999999999999999999999999999999999999999999998754
Q ss_pred CCC---C-CCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEee
Q 045398 82 SID---L-RGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPS 157 (162)
Q Consensus 82 ~~~---~-~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 157 (162)
... . ......++|||.|+|.|+|++||++|++++++.|+++|++++.++....+.+.....++.+++.+++.+.++
T Consensus 426 ~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (514)
T PLN03112 426 EGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVAT 505 (514)
T ss_pred CCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEee
Confidence 211 1 113458999999999999999999999999999999999998765322334444445667788899999999
Q ss_pred eccC
Q 045398 158 YRLN 161 (162)
Q Consensus 158 ~r~~ 161 (162)
+|..
T Consensus 506 ~r~~ 509 (514)
T PLN03112 506 PRLA 509 (514)
T ss_pred cCCc
Confidence 9963
No 19
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00 E-value=1.5e-37 Score=255.91 Aligned_cols=155 Identities=25% Similarity=0.357 Sum_probs=133.2
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeeccccee-ccEEeCCCcEEEeechhhccCCCCC-CCCCCcCCCCcC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTV-NRFHIPKKSRVIINVWAIGRDPEAW-NDPEIFFPERFV 79 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i-~~~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~ 79 (162)
.++++++++|||++|||+|+||++|+++... |.+.+|.++ +|+.|||||.|.++.+++|+|+++| +||++|+||||+
T Consensus 344 ~~t~~~l~~LpYl~avi~EtLRl~p~v~~~~-r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl 422 (502)
T PLN02426 344 AASFEEMKEMHYLHAALYESMRLFPPVQFDS-KFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWL 422 (502)
T ss_pred CCCHHHHhcChHHHHHHHHHHhCCCCCCCcc-eeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccC
Confidence 3688999999999999999999999999876 888888777 8999999999999999999999999 999999999999
Q ss_pred CCCCCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeec
Q 045398 80 GSSIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYR 159 (162)
Q Consensus 80 ~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 159 (162)
+++......++.++|||+|+|.|+|++||++|++++++.++++|++++.++. ........++++.|++++.|++++|
T Consensus 423 ~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~gl~v~~~~r 499 (502)
T PLN02426 423 KNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRS---NRAPRFAPGLTATVRGGLPVRVRER 499 (502)
T ss_pred CCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCC---CCCCcccceeEEecCCCEEEEEEEc
Confidence 7432222345689999999999999999999999999999999999986432 1112233457788999999999998
Q ss_pred c
Q 045398 160 L 160 (162)
Q Consensus 160 ~ 160 (162)
.
T Consensus 500 ~ 500 (502)
T PLN02426 500 V 500 (502)
T ss_pred c
Confidence 5
No 20
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=1.7e-37 Score=255.95 Aligned_cols=150 Identities=27% Similarity=0.457 Sum_probs=131.8
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCC-CCCCCcCCCCcCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAW-NDPEIFFPERFVG 80 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~ 80 (162)
.++++++++|||++|||+|+||++|+++.. .|.+.+|++++|+.||||+.|.++.+++|+|+++| +||++|+||||++
T Consensus 365 ~~~~~~l~~lpYl~avi~EtlRl~p~~~~~-~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~ 443 (516)
T PLN02290 365 TPSVDHLSKLTLLNMVINESLRLYPPATLL-PRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAG 443 (516)
T ss_pred CCCHHHHhcChHHHHHHHHHHHcCCCcccc-ceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCC
Confidence 368899999999999999999999999865 59999999999999999999999999999999999 8999999999995
Q ss_pred CCCCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeecc
Q 045398 81 SSIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYRL 160 (162)
Q Consensus 81 ~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 160 (162)
.+. .....++|||.|+|.|+|++||++|++++++.|+++|+++++++. . .......++.|++++.|++++|+
T Consensus 444 ~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~---~--~~~~~~~~~~p~~~~~~~~~~~~ 515 (516)
T PLN02290 444 RPF---APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNY---R--HAPVVVLTIKPKYGVQVCLKPLN 515 (516)
T ss_pred CCC---CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCc---c--cCccceeeecCCCCCeEEEEeCC
Confidence 421 124479999999999999999999999999999999999987652 1 11122567889999999999986
No 21
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-37 Score=249.53 Aligned_cols=151 Identities=28% Similarity=0.461 Sum_probs=137.9
Q ss_pred CCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCCC
Q 045398 3 VEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGSS 82 (162)
Q Consensus 3 ~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~ 82 (162)
++.+.+.+||||+|||||++||||.++... |+..+|.+++||.|||||.|.+..+.+.+|+++|++|.+|+|+||++++
T Consensus 368 ~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~-R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~ 446 (519)
T KOG0159|consen 368 LTQKALTNMPYLRACIKETLRLYPVVPGNG-RVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPS 446 (519)
T ss_pred cchHHHhhCHHHHHHHHhhhceeccccccc-cccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhcccc
Confidence 566788999999999999999999999987 9999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeecc
Q 045398 83 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYRL 160 (162)
Q Consensus 83 ~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 160 (162)
. .+.+++.++|||.|+|.|+|+.+|++|+.++|+.++++|+++..++. +......+++.|..++.+++++|.
T Consensus 447 ~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~-----pv~~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 447 T-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEE-----PVEYVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred c-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCC-----CccceeEEEEcCCCCcceeeeeCC
Confidence 3 44578999999999999999999999999999999999999987742 344455678889999999999986
No 22
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=4e-37 Score=251.01 Aligned_cols=146 Identities=27% Similarity=0.430 Sum_probs=126.3
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++++++.+|||++|||+|+||++|+++... |.+.+|++++|+.||||+.|+++.+.+|+|+++|+||++|+|+||+++
T Consensus 317 ~~~~~~l~~lpyl~a~ikE~lRl~P~v~~~~-R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~ 395 (463)
T PLN02774 317 PIDWNDYKSMRFTRAVIFETSRLATIVNGVL-RKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDK 395 (463)
T ss_pred CCCHHHHhcCcHHHHHHHHHHhcCCCCCCcc-cccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCC
Confidence 4688999999999999999999999998765 999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeee
Q 045398 82 SIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSY 158 (162)
Q Consensus 82 ~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 158 (162)
+.. ....++|||+|+|.|+|++||.+|++++++.|+++|++++.++. ... . ..+..|++++.|++++
T Consensus 396 ~~~---~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~---~~~---~-~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 396 SLE---SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGD---KLM---K-FPRVEAPNGLHIRVSP 462 (463)
T ss_pred CcC---CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCC---ccc---c-CCCCCCCCCceEEeee
Confidence 421 12369999999999999999999999999999999999997653 111 1 1234467999998874
No 23
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=5.7e-37 Score=250.25 Aligned_cols=154 Identities=34% Similarity=0.570 Sum_probs=135.1
Q ss_pred CCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCCC
Q 045398 3 VEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGSS 82 (162)
Q Consensus 3 ~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~ 82 (162)
++++++.++||++||++|+||++|+++....|.+.+|++++|+.||||+.|+++.+++|+|+++|+||++|+|+||++++
T Consensus 312 ~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~ 391 (466)
T PLN02655 312 VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEK 391 (466)
T ss_pred CCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCC
Confidence 67889999999999999999999999987679999999999999999999999999999999999999999999999764
Q ss_pred CCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeeccC
Q 045398 83 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYRLN 161 (162)
Q Consensus 83 ~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 161 (162)
... .....++|||+|+|.|+|++||.+|++++++.||++|++++.++.. ......+++..+.+++.+.+++|..
T Consensus 392 ~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 392 YES-ADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDE----EKEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred ccc-CCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc----cccchhheeEeecCCcEEEEeecCC
Confidence 321 2346899999999999999999999999999999999999876531 1223446677788999999999875
No 24
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=7e-37 Score=248.83 Aligned_cols=146 Identities=22% Similarity=0.319 Sum_probs=130.1
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++.+++.+|||++|||+|++|++|+++.. .|.+.+|++++||.||||+.|.++.+++|+|+++|+||++|+||||+++
T Consensus 305 ~~~~~~~~~lpyl~avi~E~lRl~p~~~~~-~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~ 383 (452)
T PLN03141 305 PLYWTDYMSLPFTQNVITETLRMGNIINGV-MRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEK 383 (452)
T ss_pred CCCHHHHhccHHHHHHHHHHHhccCCcCCc-ceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCC
Confidence 367788999999999999999999998865 4999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeecc
Q 045398 82 SIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYRL 160 (162)
Q Consensus 82 ~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 160 (162)
+. .+..++|||+|+|.|+|++||++|++++++.|+++|+++++++. .. ...++.|..++.|.+++|+
T Consensus 384 ~~----~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~ 450 (452)
T PLN03141 384 DM----NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDT----IV----NFPTVRMKRKLPIWVTRID 450 (452)
T ss_pred CC----CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCC----ee----ecccccCCCCceEEEEeCC
Confidence 32 35689999999999999999999999999999999999987652 11 1246788899999999986
No 25
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=1.6e-36 Score=251.30 Aligned_cols=156 Identities=31% Similarity=0.622 Sum_probs=131.8
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++.+++.+|||++||++|+||++|+++....|.+.+|++++|+.||||+.|.++.+++|+|+++|+||++|+|+||+++
T Consensus 364 ~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~ 443 (534)
T PLN03018 364 LVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQG 443 (534)
T ss_pred CCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCC
Confidence 46788999999999999999999999998766889999999999999999999999999999999999999999999975
Q ss_pred CCCC-----CCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEe
Q 045398 82 SIDL-----RGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIP 156 (162)
Q Consensus 82 ~~~~-----~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 156 (162)
+... ...+..++|||.|+|.|+|++||++|++++++.|+++|++++.++. ...+.....+.+.. .+++.|++
T Consensus 444 ~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~-p~~~~v~~ 520 (534)
T PLN03018 444 DGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDF--GPLSLEEDDASLLM-AKPLLLSV 520 (534)
T ss_pred CCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCC--CCCCccccccceec-CCCeEEEE
Confidence 4211 1245689999999999999999999999999999999999987652 12333223244444 46999999
Q ss_pred eecc
Q 045398 157 SYRL 160 (162)
Q Consensus 157 ~~r~ 160 (162)
++|.
T Consensus 521 ~~R~ 524 (534)
T PLN03018 521 EPRL 524 (534)
T ss_pred Eecc
Confidence 9984
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=100.00 E-value=2.8e-36 Score=247.57 Aligned_cols=154 Identities=29% Similarity=0.476 Sum_probs=131.9
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++++++++|||++||++|+||++|+++...+|.+.+|+.++|+.||+|+.|.++.+++|+|+++|+||++|+|+||++.
T Consensus 327 ~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~ 406 (489)
T PLN02936 327 PPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLD 406 (489)
T ss_pred CCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCC
Confidence 35778999999999999999999999998886666778888999999999999999999999999999999999999965
Q ss_pred CCC--CCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeec
Q 045398 82 SID--LRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYR 159 (162)
Q Consensus 82 ~~~--~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 159 (162)
+.. ....+..++|||.|+|.|+|++||++|++++++.|+++|++++++++ .... ..++++.+++++.|++++|
T Consensus 407 ~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~---~~~~--~~~~~~~~~~~~~v~~~~R 481 (489)
T PLN02936 407 GPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQ---DIVM--TTGATIHTTNGLYMTVSRR 481 (489)
T ss_pred CCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCC---ccce--ecceEEeeCCCeEEEEEee
Confidence 421 12234589999999999999999999999999999999999988653 2222 2245667789999999998
Q ss_pred c
Q 045398 160 L 160 (162)
Q Consensus 160 ~ 160 (162)
.
T Consensus 482 ~ 482 (489)
T PLN02936 482 R 482 (489)
T ss_pred e
Confidence 6
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00 E-value=1.8e-36 Score=247.14 Aligned_cols=146 Identities=24% Similarity=0.423 Sum_probs=128.8
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGS 81 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~ 81 (162)
.++++++.++||++||++|+||++|++++.. |.+.+|+.++||.||||+.|+++.+++|+|+++|+||++|+||||+++
T Consensus 317 ~~~~~~~~~l~yl~avi~EtlRl~p~~~~~~-R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~ 395 (463)
T PLN02196 317 SLTWEDTKKMPLTSRVIQETLRVASILSFTF-REAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVA 395 (463)
T ss_pred CCCHHHHhcChHHHHHHHHHHhcCCCccccc-eeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCC
Confidence 4688999999999999999999999999877 999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeec
Q 045398 82 SIDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYR 159 (162)
Q Consensus 82 ~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 159 (162)
. .+..++|||.|+|.|+|+++|++|++++++.|+++|++++++++ .++. ...+..|++++.|+++++
T Consensus 396 ~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~----~~~~--~~~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 396 P-----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTS----NGIQ--YGPFALPQNGLPIALSRK 462 (463)
T ss_pred C-----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCC----CceE--EcccccCCCCceEEEecC
Confidence 2 34589999999999999999999999999999999999987652 2232 233456889988888754
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00 E-value=4e-36 Score=246.02 Aligned_cols=148 Identities=26% Similarity=0.381 Sum_probs=130.8
Q ss_pred CCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCCC
Q 045398 3 VEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGSS 82 (162)
Q Consensus 3 ~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~ 82 (162)
++++++++|||++|+|+|++|++|+++... |.+.+|++++|+.||||+.|.++.+++|+|+++|+||++|+|+||++..
T Consensus 342 ~~~~~l~~lpyl~a~i~E~lRl~p~~~~~~-R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~ 420 (490)
T PLN02302 342 LTLKDVRKMEYLSQVIDETLRLINISLTVF-REAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT 420 (490)
T ss_pred CCHHHHhcChHHHHHHHHHHHhCCCcccch-hcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC
Confidence 678899999999999999999999998865 8889999999999999999999999999999999999999999999753
Q ss_pred CCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeeccC
Q 045398 83 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYRLN 161 (162)
Q Consensus 83 ~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 161 (162)
. .+..++|||.|+|.|+|++||.+|++++++.++++|++++.++. .++. ....+.|.+++.+++++|.+
T Consensus 421 ~----~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~----~~~~--~~~~~~p~~~~~~~~~~~~~ 489 (490)
T PLN02302 421 P----KAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPG----CKVM--YLPHPRPKDNCLARITKVAS 489 (490)
T ss_pred C----CCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCC----Ccce--eCCCCCCCCCceEEEEeccC
Confidence 2 35589999999999999999999999999999999999987542 2222 22347888999999998864
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00 E-value=9.8e-36 Score=243.48 Aligned_cols=150 Identities=27% Similarity=0.349 Sum_probs=131.8
Q ss_pred CCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCCC
Q 045398 3 VEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGSS 82 (162)
Q Consensus 3 ~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~ 82 (162)
++++++.+|||++|+++|+||++|+++... |.+.+|++++||.||||+.|+++.+.+|+|+++|+||++|+|+||++++
T Consensus 321 ~~~~~l~~lpyl~a~i~EtLRl~p~~~~~~-R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~ 399 (472)
T PLN02987 321 LEWSDYKSMPFTQCVVNETLRVANIIGGIF-RRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNS 399 (472)
T ss_pred CCHHHHhcChHHHHHHHHHHHccCCcCCcc-ccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCC
Confidence 577889999999999999999999998655 9999999999999999999999999999999999999999999999754
Q ss_pred CCCCCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeeccC
Q 045398 83 IDLRGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYRLN 161 (162)
Q Consensus 83 ~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 161 (162)
... .....++|||+|+|.|+|++||++|++++++.|+++|+++++++. + . ....++.|.+++.+++++|+.
T Consensus 400 ~~~-~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~--~--~~~~~~~p~~~~~~~~~~r~~ 470 (472)
T PLN02987 400 GTT-VPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQD---K--L--VFFPTTRTQKRYPINVKRRDV 470 (472)
T ss_pred CCC-CCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCC---c--e--eecccccCCCCceEEEEeccc
Confidence 322 234589999999999999999999999999999999999987652 2 2 223477889999999999863
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-36 Score=237.57 Aligned_cols=153 Identities=35% Similarity=0.560 Sum_probs=136.0
Q ss_pred CCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceecc----EEeCCCcEEEeechhhccCCCCCCCCCCcCCCCc
Q 045398 3 VEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVNR----FHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERF 78 (162)
Q Consensus 3 ~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~----~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~ 78 (162)
++.+++++||+|+.||+|||||+||.+... |.+.+|.++.+ |.||+|..|.++...+|+||++|+||++|+|+||
T Consensus 325 l~~d~L~~lplL~~~IkEtLRL~~p~~~~~-R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf 403 (486)
T KOG0684|consen 325 LTYDQLKDLPLLDSCIKETLRLHPPAHSLM-RKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRF 403 (486)
T ss_pred CCHHHHhcchHHHHHHHHHHhcCCchhhHH-HhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhc
Confidence 788999999999999999999999888877 99999999965 9999999999999999999999999999999999
Q ss_pred CCCCCCC----CCCCcceeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeE
Q 045398 79 VGSSIDL----RGHDFQLLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLA 154 (162)
Q Consensus 79 ~~~~~~~----~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 154 (162)
++++++. ..-.+.+||||+|.|.|||+.||.+|++.++..+|++||+++.++. .+.+++ ..++++|.+++.+
T Consensus 404 ~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~-~P~~d~---s~~v~~P~g~v~i 479 (486)
T KOG0684|consen 404 LKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGP-FPEVDY---SRMVMQPEGDVRI 479 (486)
T ss_pred cCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCC-CCCCCH---HHhhcCCCCCceE
Confidence 9877644 1234567999999999999999999999999999999999999862 333443 3568899999999
Q ss_pred Eeeecc
Q 045398 155 IPSYRL 160 (162)
Q Consensus 155 ~~~~r~ 160 (162)
++++|.
T Consensus 480 rYK~R~ 485 (486)
T KOG0684|consen 480 RYKRRP 485 (486)
T ss_pred EEeecC
Confidence 999985
No 31
>PLN02648 allene oxide synthase
Probab=99.97 E-value=6.8e-31 Score=215.08 Aligned_cols=125 Identities=25% Similarity=0.457 Sum_probs=110.1
Q ss_pred CCCccccCCCHHHHHHHhhhhcCCCCCCCCcceeecccceec----cEEeCCCcEEEeechhhccCCCCCCCCCCcCCCC
Q 045398 2 MVEESDLENLEYLDMVVKETLRLHPVGPLLIPHESTEDCTVN----RFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPER 77 (162)
Q Consensus 2 ~~~~~~~~~~~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~----~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R 77 (162)
.++++++.+|||+++|++|+||++|+++... |.+.+|++++ ||.||||+.|+++.+.+|+|+++|+||++|+|+|
T Consensus 324 ~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~-r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeR 402 (480)
T PLN02648 324 GVTFAALEKMPLVKSVVYEALRIEPPVPFQY-GRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDR 402 (480)
T ss_pred CCCHHHHhcCHHHHHHHHHHHhhcCCccccc-ceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCC
Confidence 4788999999999999999999999999877 7789999996 7999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcceeec---------cCCCCCCcChHHHHHHHHHHHHHHhhhcE-EEccCC
Q 045398 78 FVGSSIDLRGHDFQLLPF---------GSGRRGCPGMQLGLTIVKHVIVQLVHCFD-WELPGG 130 (162)
Q Consensus 78 ~~~~~~~~~~~~~~~~~f---------g~G~r~C~G~~~a~~~~~~~l~~ll~~f~-~~~~~~ 130 (162)
|++++.. ....+++| |+|+|.|+|++||++|++++++.|+++|+ +++..+
T Consensus 403 f~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 403 FMGEEGE---KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVD 462 (480)
T ss_pred CCCCCcc---ccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCC
Confidence 9875322 11234444 67789999999999999999999999998 998766
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=1.1e-29 Score=204.68 Aligned_cols=131 Identities=32% Similarity=0.430 Sum_probs=114.0
Q ss_pred HHHHHHHhhhhcCCCCCCCCcceeecccceeccEEeCCCcEEEeechhhccCCCCCCCCCCcCCCCcCCCCCCCCCCCcc
Q 045398 12 EYLDMVVKETLRLHPVGPLLIPHESTEDCTVNRFHIPKKSRVIINVWAIGRDPEAWNDPEIFFPERFVGSSIDLRGHDFQ 91 (162)
Q Consensus 12 ~~l~a~i~E~lRl~~~~~~~~~r~~~~d~~i~~~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~ 91 (162)
+|+.++++|+||++|+++. ..|.+.+|++++|+.||||+.|.++++++|+|+++|++|++|+|+||. ..
T Consensus 280 ~~~~~~v~E~LR~~ppv~~-~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~ 348 (411)
T COG2124 280 PLLEAVVEETLRLYPPVPL-ARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NA 348 (411)
T ss_pred HHHHHHHHHHHHhCCchhc-cceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CC
Confidence 6899999999999999998 559999999999999999999999999999999999999999999995 48
Q ss_pred eeeccCCCCCCcChHHHHHHHHHHHHHHhhhcEEEccCCccCcccCcccccceeccCCCceeEEeeec
Q 045398 92 LLPFGSGRRGCPGMQLGLTIVKHVIVQLVHCFDWELPGGMLLTELDMTEEFGLVTPRAKHLLAIPSYR 159 (162)
Q Consensus 92 ~~~fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 159 (162)
+++||+|+|.|+|..||++|++++++.++++|++....+ . ... ....+..+..+..+.++.+
T Consensus 349 ~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~-~---~~~--~~~~~~~~~g~~~l~v~~~ 410 (411)
T COG2124 349 HLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE-P---PPL--VRRPTLVPRGGERLPVRRR 410 (411)
T ss_pred CcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC-C---CCc--cccccccCCCcceeeeecC
Confidence 999999999999999999999999999999999877654 1 111 2234556667777776654
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=69.64 E-value=1.5 Score=32.28 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhcCCCCCCCCcce-eecccceeccEEeCCCcEEEe
Q 045398 12 EYLDMVVKETLRLHPVGPLLIPH-ESTEDCTVNRFHIPKKSRVII 55 (162)
Q Consensus 12 ~~l~a~i~E~lRl~~~~~~~~~r-~~~~d~~i~~~~ip~g~~v~~ 55 (162)
....|||.|..-+...... | +..+|+.++|..||||+.+.-
T Consensus 53 n~I~A~V~~~qtv~~Gs~v---rlRLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 53 NTIRAVVDGTQTVVDGSRV---RLRLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred CeEEEEEecceEEeCCCEE---EEEEcCceEECCEEeCCCCEEEE
Confidence 3456777777765433222 3 246889999999999987654
No 34
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=66.58 E-value=5.2 Score=27.63 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=16.7
Q ss_pred CCcChHHHHHHHHHHHHHHhhhc
Q 045398 101 GCPGMQLGLTIVKHVIVQLVHCF 123 (162)
Q Consensus 101 ~C~G~~~a~~~~~~~l~~ll~~f 123 (162)
+|.|+.||+..+-.++.+|+..-
T Consensus 19 N~~gKKFsE~QiN~FIs~lItsP 41 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITSP 41 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS-
T ss_pred cccchHHHHHHHHHHHHHHhcCC
Confidence 79999999999999999998753
No 35
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=57.61 E-value=4.3 Score=23.80 Aligned_cols=7 Identities=43% Similarity=0.724 Sum_probs=5.5
Q ss_pred CCCCcCC
Q 045398 74 FPERFVG 80 (162)
Q Consensus 74 ~p~R~~~ 80 (162)
||||||-
T Consensus 44 DPERWLP 50 (59)
T PF08492_consen 44 DPERWLP 50 (59)
T ss_pred CccccCc
Confidence 7888875
No 36
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=47.22 E-value=30 Score=24.18 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=17.2
Q ss_pred cccceeccEEeCCCcEEEeec
Q 045398 37 TEDCTVNRFHIPKKSRVIINV 57 (162)
Q Consensus 37 ~~d~~i~~~~ip~g~~v~~~~ 57 (162)
.+|++++|..||+|+.-++..
T Consensus 53 ~~dv~igGk~l~AG~Ysl~ti 73 (145)
T PF11138_consen 53 SKDVTIGGKKLKAGTYSLFTI 73 (145)
T ss_pred CCCeEECCEEcCCeeEEEEEe
Confidence 579999999999998765554
No 37
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=43.80 E-value=7.7 Score=31.80 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhcCCCCCCCCcce-eecccceeccEEeCCCcEEEee
Q 045398 12 EYLDMVVKETLRLHPVGPLLIPH-ESTEDCTVNRFHIPKKSRVIIN 56 (162)
Q Consensus 12 ~~l~a~i~E~lRl~~~~~~~~~r-~~~~d~~i~~~~ip~g~~v~~~ 56 (162)
..+.|||.|+.-+.-...+ | +..+|+.++|..||+||.+.-.
T Consensus 256 n~I~A~V~~~qtv~~G~~v---rlRLle~~~v~~~~ipkgt~l~g~ 298 (410)
T TIGR03779 256 NTIRACVHETQTVVDGSAV---KLRLLEPIQAGDLVIPKGTVLYGT 298 (410)
T ss_pred CceEEEEcCceEEecCCEE---EEEEcCceeeCCEEecCCCEEEEE
Confidence 3456677776655432221 3 2468899999999999876543
No 38
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=43.41 E-value=14 Score=26.60 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=24.3
Q ss_pred CCcCCCCcCCCCCCCCCCCcceeeccCCCCCCcChH
Q 045398 71 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGMQ 106 (162)
Q Consensus 71 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~ 106 (162)
-+|+|+||-.---....+....+-|+.|+=.|.|-.
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGak 64 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGAK 64 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEccC
Confidence 478888884211111224558899999999999874
No 39
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=41.58 E-value=17 Score=22.85 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhcEEEccCC
Q 045398 110 TIVKHVIVQLVHCFDWELPGG 130 (162)
Q Consensus 110 ~~~~~~l~~ll~~f~~~~~~~ 130 (162)
.-|+-++.++|+-|||++++-
T Consensus 60 ~~IrdAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHHHHHhccCCceeeec
Confidence 457888999999999999763
No 40
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=38.50 E-value=23 Score=25.54 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=23.9
Q ss_pred CCcCCCCcCCCCCCCCCCCcceeeccCCCCCCcChH
Q 045398 71 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGMQ 106 (162)
Q Consensus 71 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~ 106 (162)
.+|||++|-.-=-....+....+-|..|+-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 467888873210011224558899999999999976
No 41
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=36.83 E-value=18 Score=21.64 Aligned_cols=14 Identities=29% Similarity=0.840 Sum_probs=11.8
Q ss_pred HHHHHHHhhhhcCC
Q 045398 12 EYLDMVVKETLRLH 25 (162)
Q Consensus 12 ~~l~a~i~E~lRl~ 25 (162)
.+++.+|+|++|+.
T Consensus 41 ~fv~~~IkEA~RFk 54 (65)
T PF15300_consen 41 QFVEMIIKEAARFK 54 (65)
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999973
No 42
>PRK06789 flagellar motor switch protein; Validated
Probab=36.80 E-value=36 Score=20.89 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=30.0
Q ss_pred HHhhhhcCCCCCCCCcceeecc--cceeccEEeCCCcEEEeec
Q 045398 17 VVKETLRLHPVGPLLIPHESTE--DCTVNRFHIPKKSRVIINV 57 (162)
Q Consensus 17 ~i~E~lRl~~~~~~~~~r~~~~--d~~i~~~~ip~g~~v~~~~ 57 (162)
-++|.+.+.+..-...-+.+.+ |+.++|..|.+|..|.+.-
T Consensus 21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~~ 63 (74)
T PRK06789 21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNG 63 (74)
T ss_pred EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEECC
Confidence 4688899988766656566655 4556899999998887653
No 43
>PRK00394 transcription factor; Reviewed
Probab=35.50 E-value=24 Score=25.51 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=23.5
Q ss_pred CCcCCCCcCCCCCCCCCCCcceeeccCCCCCCcCh
Q 045398 71 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGM 105 (162)
Q Consensus 71 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~ 105 (162)
-+|+|+||-.---....+....+-|+.|+=.|.|.
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa 62 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTGA 62 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEcc
Confidence 47888888421111122455889999999999983
No 44
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=31.60 E-value=37 Score=23.00 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=17.1
Q ss_pred eecccceeccEEeCCCcEEEe
Q 045398 35 ESTEDCTVNRFHIPKKSRVII 55 (162)
Q Consensus 35 ~~~~d~~i~~~~ip~g~~v~~ 55 (162)
.+..|..++|-.||+|++++.
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~ 92 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVG 92 (122)
T ss_pred ecCCCcccCCeeecceEEEEE
Confidence 345688999999999998754
No 45
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=28.39 E-value=36 Score=25.32 Aligned_cols=19 Identities=32% Similarity=0.693 Sum_probs=17.0
Q ss_pred hhccCCCCCCCCCCcCCCC
Q 045398 59 AIGRDPEAWNDPEIFFPER 77 (162)
Q Consensus 59 ~~~~d~~~~~~p~~f~p~R 77 (162)
.-+.|+..|.|.+.|+|.|
T Consensus 193 ~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 193 PDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCCcccccCccccCCCC
Confidence 3489999999999999988
No 46
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=28.19 E-value=1.4e+02 Score=24.04 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=17.7
Q ss_pred CCcceeeccCCCCCCcChHHHHHHHHHHH
Q 045398 88 HDFQLLPFGSGRRGCPGMQLGLTIVKHVI 116 (162)
Q Consensus 88 ~~~~~~~fg~G~r~C~G~~~a~~~~~~~l 116 (162)
++++++-||- -.-.|+.+|. |++.++
T Consensus 326 spYs~l~~~~--pms~GrRIA~-EIk~A~ 351 (361)
T COG1759 326 SPYSNLYWGE--PMSTGRRIAR-EIKEAI 351 (361)
T ss_pred CcchhhhcCC--CcchhhHHHH-HHHHHH
Confidence 3556666653 3678999998 777654
No 47
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=27.78 E-value=27 Score=20.07 Aligned_cols=11 Identities=45% Similarity=1.002 Sum_probs=8.8
Q ss_pred eeccCCCCCCc
Q 045398 93 LPFGSGRRGCP 103 (162)
Q Consensus 93 ~~fg~G~r~C~ 103 (162)
-+||-|.|.|-
T Consensus 12 ~kfg~GsrsC~ 22 (56)
T KOG3506|consen 12 RKFGQGSRSCR 22 (56)
T ss_pred cccCCCCccee
Confidence 46899999885
No 48
>PLN00062 TATA-box-binding protein; Provisional
Probab=26.93 E-value=34 Score=24.74 Aligned_cols=55 Identities=18% Similarity=0.372 Sum_probs=31.9
Q ss_pred CCcCCCCcCCCCCCCCCCCcceeeccCCCCCCcCh-HHHHH-HHHHHHHHHhhhcEE
Q 045398 71 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGM-QLGLT-IVKHVIVQLVHCFDW 125 (162)
Q Consensus 71 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~-~~a~~-~~~~~l~~ll~~f~~ 125 (162)
-+|+|++|-.---....+....+-|+.|+=.|-|. ..... .+..-++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 57888887321111122345789999999999985 33222 233334555666554
No 49
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=26.41 E-value=39 Score=24.24 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=32.2
Q ss_pred CCcCCCCcCCCCCCCCCCCcceeeccCCCCCCcCh-HH--HHHHHHHHHHHHhhhcEEEc
Q 045398 71 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGM-QL--GLTIVKHVIVQLVHCFDWEL 127 (162)
Q Consensus 71 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~-~~--a~~~~~~~l~~ll~~f~~~~ 127 (162)
-+|+|++|-.---....+.-..+-|+.|+=.|-|. .. |...+ --++.+|+++.+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~-~~~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAA-RKYARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHH-HHHHHHHHHcCCCc
Confidence 47888887321111122455889999999999984 32 22222 33445566665443
No 50
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=23.67 E-value=43 Score=24.10 Aligned_cols=56 Identities=18% Similarity=0.363 Sum_probs=31.9
Q ss_pred CCcCCCCcCCCCCCCCCCCcceeeccCCCCCCcCh-HHHH-HHHHHHHHHHhhhcEEE
Q 045398 71 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGM-QLGL-TIVKHVIVQLVHCFDWE 126 (162)
Q Consensus 71 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~-~~a~-~~~~~~l~~ll~~f~~~ 126 (162)
-+|+|++|-.---....+....+-|+.|+=.|-|. .... ..+..-++.+|+++.+.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~ 86 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFP 86 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 57888887321111122344679999999999983 3322 11223344566666544
No 51
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=21.38 E-value=68 Score=21.57 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=17.0
Q ss_pred CCCcChHHHHHHHHHHHHHHhh
Q 045398 100 RGCPGMQLGLTIVKHVIVQLVH 121 (162)
Q Consensus 100 r~C~G~~~a~~~~~~~l~~ll~ 121 (162)
|.|||--++..+...++..|-.
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHHTS
T ss_pred CcCccHHHHHHHHHHHHHHcCC
Confidence 7899999999999988877743
No 52
>PHA03162 hypothetical protein; Provisional
Probab=20.22 E-value=86 Score=21.50 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=16.8
Q ss_pred cCCCCCCcChHHHHHHHHHHHHHH
Q 045398 96 GSGRRGCPGMQLGLTIVKHVIVQL 119 (162)
Q Consensus 96 g~G~r~C~G~~~a~~~~~~~l~~l 119 (162)
+.|.+.||++...+-++..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999997766655444443
No 53
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=20.04 E-value=66 Score=23.65 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=23.2
Q ss_pred CCcCCCCcCCCCCCCCCCCcceeeccCCCCCCcChH
Q 045398 71 EIFFPERFVGSSIDLRGHDFQLLPFGSGRRGCPGMQ 106 (162)
Q Consensus 71 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~ 106 (162)
.+|+|.||-.--.....+.....-|+.|+=.|-|..
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA~ 85 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGAK 85 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEeccC
Confidence 678999984211111123446788999999999753
Done!