Query 045399
Match_columns 802
No_of_seqs 340 out of 962
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 22:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hu3_A EIF4GII; heat repeat, t 100.0 1.3E-54 4.3E-59 459.1 20.8 242 218-468 7-260 (260)
2 2vso_E Eukaryotic initiation f 100.0 5.2E-51 1.8E-55 436.6 24.5 248 202-451 2-284 (284)
3 3rk6_A Polyadenylate-binding p 100.0 3.7E-46 1.2E-50 388.3 15.5 206 217-445 14-234 (234)
4 2i2o_A EIF4G-like protein; pro 100.0 5.9E-42 2E-46 354.5 10.6 192 234-454 12-213 (224)
5 2rg8_A Programmed cell death p 100.0 4.5E-32 1.5E-36 268.2 13.3 151 632-784 2-152 (165)
6 2ion_A PDCD4, programmed cell 100.0 1.1E-30 3.6E-35 255.0 11.1 137 635-774 4-141 (152)
7 2nsz_A Programmed cell death p 100.0 2.5E-30 8.6E-35 245.9 11.2 124 635-758 2-126 (129)
8 1ug3_A EIF4GI, eukaryotic prot 99.9 3.2E-28 1.1E-32 266.3 9.3 158 632-789 3-161 (339)
9 3eiq_C Programmed cell death p 99.9 2.4E-27 8.2E-32 260.0 8.1 148 631-780 45-192 (358)
10 2zu6_B Programmed cell death p 99.9 1.7E-26 5.7E-31 249.1 13.0 132 627-758 152-285 (307)
11 3l6a_A Eukaryotic translation 99.9 4.5E-26 1.5E-30 251.3 14.4 151 634-788 6-157 (364)
12 2zu6_B Programmed cell death p 99.9 1.3E-26 4.5E-31 249.9 8.3 143 638-782 1-143 (307)
13 3eiq_C Programmed cell death p 99.9 2.1E-25 7.3E-30 244.6 15.2 133 626-758 202-336 (358)
14 1uw4_B UPF2, regulator of nons 99.7 6.2E-16 2.1E-20 161.1 22.2 217 223-472 5-244 (248)
15 1h2v_C 80 kDa nuclear CAP bind 98.9 5.9E-09 2E-13 124.8 16.0 197 217-451 3-227 (771)
16 4b89_A General negative regula 95.2 0.097 3.3E-06 54.3 10.9 192 218-445 30-225 (249)
17 4gmj_A CCR4-NOT transcription 93.7 1.2 4.2E-05 45.7 14.8 190 220-444 5-201 (229)
18 1rf8_B Eukaryotic initiation f 89.8 0.26 8.9E-06 44.1 4.0 37 68-104 48-86 (100)
19 3hxi_C Eukaryotic translation 86.1 0.25 8.6E-06 31.7 1.1 17 77-93 2-18 (21)
20 3u0r_A Apoptosis inhibitor 5; 83.1 21 0.00071 40.5 15.6 160 221-404 177-360 (507)
21 3pev_B Nucleoporin GLE1; RECA, 77.3 66 0.0023 34.1 16.5 172 220-407 42-246 (297)
22 4g26_A Pentatricopeptide repea 50.0 42 0.0014 37.8 9.0 69 643-711 29-106 (501)
23 1juq_A ADP-ribosylation factor 40.1 62 0.0021 31.4 7.3 107 350-469 32-144 (171)
24 4b8b_A General negative regula 36.6 1.5E+02 0.005 34.5 10.6 89 637-725 445-543 (603)
25 2qk2_A LP04448P; mini spindles 36.3 2.8E+02 0.0095 27.0 11.8 83 657-747 75-163 (242)
26 4fu3_A Regulation of nuclear P 29.2 1.3E+02 0.0043 27.4 7.2 123 633-762 3-129 (135)
27 4g26_A Pentatricopeptide repea 28.2 63 0.0022 36.3 5.9 83 643-726 108-191 (501)
28 1yoz_A Hypothetical protein AF 27.1 39 0.0013 30.1 3.0 83 654-743 21-111 (116)
29 3g2s_A C-terminal fragment of 26.7 1.2E+02 0.0042 28.6 6.7 105 350-469 30-142 (149)
30 3gs3_A Symplekin, LD45768P; he 25.7 1.2E+02 0.0041 31.3 7.0 69 637-706 11-85 (257)
31 1x5b_A Signal transducing adap 24.8 2.9E+02 0.01 26.3 9.1 108 350-468 34-143 (163)
32 3rjo_A Endoplasmic reticulum a 24.6 2.1E+02 0.0073 31.0 9.2 135 641-782 252-390 (419)
33 3cz6_A DNA-binding protein RAP 21.5 2.7E+02 0.0092 27.0 7.8 62 635-703 42-105 (168)
34 3spa_A Mtrpol, DNA-directed RN 21.3 79 0.0027 39.4 5.1 86 644-729 169-265 (1134)
35 1tu9_A Hypothetical protein PA 21.3 1.5E+02 0.005 26.7 6.0 91 645-748 35-131 (134)
36 1h2v_C 80 kDa nuclear CAP bind 20.9 7E+02 0.024 29.7 13.2 95 637-733 29-145 (771)
37 3b2a_A TON_1937, putative unch 20.4 4.3E+02 0.015 27.4 9.6 107 647-762 12-120 (265)
No 1
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=100.00 E-value=1.3e-54 Score=459.09 Aligned_cols=242 Identities=38% Similarity=0.693 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHhhcCCHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhh-hCCCCCCCCC
Q 045399 218 EKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNE-KLPPFPSDEP 296 (802)
Q Consensus 218 e~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~I~s~e~Lk~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~-~lp~~~~~e~ 296 (802)
+++++.|+|++|||||||+||+.|+.||+++++.+.+.+++||++||+||+.||+|+.|||+||..|+. .+|.+ +.
T Consensus 7 ~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~---~~ 83 (260)
T 1hu3_A 7 KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMA---DK 83 (260)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-------
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcc---cC
Confidence 457899999999999999999999999999999999999999999999999999999999999999997 46654 22
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhhHH-------HHHhcCCchH--HH--HHHhHHHHHhhhhhhHHHHHHHHHhcCCCC
Q 045399 297 GGKEITFKRVLLNICQEAFEGADKLRE-------EVRQMTAPDQ--ES--ERRDKERLVKLRTLGNIRLIGELLKQKMVP 365 (802)
Q Consensus 297 ~~~~~~Frr~LL~rcQeeFe~~~~~~~-------e~~~~~~~e~--E~--E~~dke~~~Krr~lGnIrFIGELyk~~ml~ 365 (802)
.+...+||++||++||++|++.++... ++.....+++ ++ |.++.+.+.|+|++|+|+||||||+++||+
T Consensus 84 ~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~ 163 (260)
T 1hu3_A 84 PGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLT 163 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSC
T ss_pred CccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC
Confidence 335678999999999999999864321 1111111111 00 111222467899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCChhcHHHHHHHHHHHhhhhhcCCchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 045399 366 EKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLR 445 (802)
Q Consensus 366 e~Im~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~mD~~F~rL~~l~~~~~lssRIRFML~dvidLR 445 (802)
++|||+||..||.+ |+|++|||+|.||+|||+.|+. ++++..||.||.+|+.++.+.++|+|+||||+||+|||
T Consensus 164 ~~i~~~~l~~Ll~~-----~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR 237 (260)
T 1hu3_A 164 EAIMHDCVVKLLKN-----HDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLR 237 (260)
T ss_dssp HHHHHHHHHHHHHS-----CSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999986 7999999999999999999997 34557899999999999999999999999999999999
Q ss_pred hCCCCccccccCcccHHHHHHHH
Q 045399 446 ANNWVPRREEVTAKTITEIHSEA 468 (802)
Q Consensus 446 ~n~W~~r~~~~~pkti~eI~~ea 468 (802)
+|||++++.+.+||||+|||+||
T Consensus 238 ~~~W~~~~~~~~pkti~~i~~ea 260 (260)
T 1hu3_A 238 LCNWVSRRADQGPKTIEQIHKEA 260 (260)
T ss_dssp HTTTCC-----------------
T ss_pred HcCCCCCccccCCCcHHHHHhhC
Confidence 99999999999999999999987
No 2
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=100.00 E-value=5.2e-51 Score=436.61 Aligned_cols=248 Identities=29% Similarity=0.497 Sum_probs=195.8
Q ss_pred cccccCCCccccC-----------C---CChHHHHHHHHHHHhhcCCHhhHHHHHHHHHHhcc-----CCHHHHHHHHHH
Q 045399 202 LIKAEVPWSAKRG-----------N---LSEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGI-----TSADILKEVISL 262 (802)
Q Consensus 202 l~~~en~w~~~r~-----------~---~se~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~I-----~s~e~Lk~VI~l 262 (802)
|++++|+|+|+.. . ..+++++.|+|++|||||||+||+.|+.||+++++ ++.++|++||++
T Consensus 2 l~~s~~~w~P~~~~~~~~~~~~~~~~~~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~ 81 (284)
T 2vso_E 2 LVPSANRWVPKFKSKKTEKKLAPDGKTELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQ 81 (284)
T ss_dssp -----CCCCCC---------------CCCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHH
T ss_pred CCCCCCCCCChhhhcccccccCCCcccccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHH
Confidence 6788999998631 1 24588999999999999999999999999999886 678999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCCC-C--chhhHHHHHHHHHHHHHhhhhhh--H--HHHHhcCCchHHH
Q 045399 263 IFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPG-G--KEITFKRVLLNICQEAFEGADKL--R--EEVRQMTAPDQES 335 (802)
Q Consensus 263 IFeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e~~-~--~~~~Frr~LL~rcQeeFe~~~~~--~--~e~~~~~~~e~E~ 335 (802)
||+||+.||+||.|||+||..|+..+|....++.+ + +...||++||++||++|++.+.. . ++-... .++...
T Consensus 82 If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~-e~e~~~ 160 (284)
T 2vso_E 82 IFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPL-EPEMMS 160 (284)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC-------------CC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchh-hhhhhh
Confidence 99999999999999999999999988754334322 1 24689999999999999997421 1 000000 000000
Q ss_pred HHHhHHHHHhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCCCChhcHHHHHHHHHHHhhhhhcCCc------
Q 045399 336 ERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEGPK------ 409 (802)
Q Consensus 336 E~~dke~~~Krr~lGnIrFIGELyk~~ml~e~Im~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~~k------ 409 (802)
++.+++.+.|+|++|||+||||||+++||+++|||+||..||+.. ...|+|++|||||+||+|||+.|++.+.
T Consensus 161 ~e~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~-~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~ 239 (284)
T 2vso_E 161 EEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDL-TDSPSEETLESVVELLNTVGEQFETDSFRTGQAT 239 (284)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTSCC-------
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 111233578899999999999999999999999999999999731 1248999999999999999999997652
Q ss_pred --hhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhC-CCCc
Q 045399 410 --SRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLRAN-NWVP 451 (802)
Q Consensus 410 --~~~~mD~~F~rL~~l~~~~~lssRIRFML~dvidLR~n-~W~~ 451 (802)
++..||.||++|+.++++.++|+||||||+||+|||+| ||++
T Consensus 240 ~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dlidLR~n~~W~~ 284 (284)
T 2vso_E 240 LEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWNS 284 (284)
T ss_dssp -CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC-
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence 36799999999999999999999999999999999996 9985
No 3
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-46 Score=388.30 Aligned_cols=206 Identities=23% Similarity=0.415 Sum_probs=178.6
Q ss_pred ChHHHHHHHHHHHhhcCC--HhhHHHHHHHHHHh---ccCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCCCC
Q 045399 217 SEKERVLKTVKGILNKLT--PEKFDLLKGQLIDS---GITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPF 291 (802)
Q Consensus 217 se~e~l~r~Vk~ILNKLT--penfd~l~~qLl~l---~I~s~e~Lk~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~lp~~ 291 (802)
+..+.+.|+|++|||||| |+||+.++++|+++ .+++.+.|++||++||+||++||+||+|||+||.+|+..++..
T Consensus 14 ~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~ 93 (234)
T 3rk6_A 14 GRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS 93 (234)
T ss_dssp ----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCC
T ss_pred cchHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCC
Confidence 346779999999999999 99999999999987 7899999999999999999999999999999999999987654
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHhhhhhhHHHHHhcCCchHHHHHHhHHHHHhhhhhhHHHHHHHHHhc--------CC
Q 045399 292 PSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQ--------KM 363 (802)
Q Consensus 292 ~~~e~~~~~~~Frr~LL~rcQeeFe~~~~~~~e~~~~~~~e~E~E~~dke~~~Krr~lGnIrFIGELyk~--------~m 363 (802)
+ ...+||++||++||++|++.+++. + .| .++|+|++|+|+||||||++ +|
T Consensus 94 ~------~~~~Fr~lLL~rcQ~eFe~~~~~~----~---~d---------~~~k~r~lg~i~FIgELf~~l~~~~~~~~~ 151 (234)
T 3rk6_A 94 P------QSGNFRQLLLQRCRTEYEVKDQAA----K---GD---------EVTRKRFHAFVLFLGELYLNLEIKGTNGQV 151 (234)
T ss_dssp C------TTCCHHHHHHHHHHHHHTTHHHHT----S---SC---------HHHHHHHHHHHHHHHHHHHHCCEECTTSSE
T ss_pred C------chhHHHHHHHHHHHHHHHhhHHhh----h---cc---------HHHHHHHHHHHHHHHHHHhhhcccccccch
Confidence 2 246899999999999999986421 1 11 13578999999999999998 89
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCChhcHHHHHHHHHHHhhhhhcC--CchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 045399 364 VPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEG--PKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDV 441 (802)
Q Consensus 364 l~e~Im~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~--~k~~~~mD~~F~rL~~l~~~~~lssRIRFML~dv 441 (802)
++++|||.||.+||... ...|+|++|||+|+||+|||+.||+. ++++..||.||++|+.++.+.++|+||||||+||
T Consensus 152 l~e~I~~~ci~~Ll~~l-~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dl 230 (234)
T 3rk6_A 152 TRADILQVGLRELLNAL-FSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKL 230 (234)
T ss_dssp ECCHHHHHHHHHHHHHH-HHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999998741 11389999999999999999999963 2455789999999999999999999999999999
Q ss_pred HHHH
Q 045399 442 LDLR 445 (802)
Q Consensus 442 idLR 445 (802)
||||
T Consensus 231 ieLR 234 (234)
T 3rk6_A 231 VELR 234 (234)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9998
No 4
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=100.00 E-value=5.9e-42 Score=354.48 Aligned_cols=192 Identities=21% Similarity=0.353 Sum_probs=158.3
Q ss_pred CHhhHHHHHHHHHHhccC--CHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCCCCchhhHHHHHHHHH
Q 045399 234 TPEKFDLLKGQLIDSGIT--SADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNIC 311 (802)
Q Consensus 234 Tpenfd~l~~qLl~l~I~--s~e~Lk~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e~~~~~~~Frr~LL~rc 311 (802)
+-++|+..+.+|+...+. +...|++||++||+||++||+||.|||+||..|....+. +.+ ...||++||++|
T Consensus 12 ~i~~f~~~~q~ll~~~~~~~~~~~l~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~----~~g--~~~Fr~~LLn~c 85 (224)
T 2i2o_A 12 KIQSFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAK----QTN--GSVFRRNLLNRL 85 (224)
T ss_dssp CCTTSCHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHH----HHS--CCHHHHHHHHHH
T ss_pred chhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccc----ccc--chHHHHHHHHHH
Confidence 344555555555554332 223589999999999999999999999999999876432 111 345999999999
Q ss_pred HHHHhhhhhhHHHHHhcCCchHHHHHHhHHHHHhhhhhhHHHHHHHHHhc----C--CCC-HHHHHHHHHHHhcCCCCCC
Q 045399 312 QEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQ----K--MVP-EKIVHHIVQELLGHDSSTC 384 (802)
Q Consensus 312 QeeFe~~~~~~~e~~~~~~~e~E~E~~dke~~~Krr~lGnIrFIGELyk~----~--ml~-e~Im~~cI~~LL~~~~~~~ 384 (802)
|++|++.++ .+.+.|+|++|||+||||||++ + ++. ++|||.||..||... ..
T Consensus 86 Q~eFe~~ee-------------------~~~~~k~r~lG~i~FIgELf~~l~~~~~~~~~l~~i~~~cl~~Ll~~~--~~ 144 (224)
T 2i2o_A 86 QQEFKAREE-------------------TRKRSTQEWVCLVSFICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSD--AL 144 (224)
T ss_dssp HHHHHTHHH-------------------HHHHCHHHHHHHHHHHHHHHHHSCBTTBCCGGGHHHHHHHHHHHTSHH--HH
T ss_pred HHHHHChHH-------------------HHHHHHHHHhHHHHHHHHHHhHhcccCcchHHHHHHHHHHHHHHhccC--CC
Confidence 999998621 1135689999999999999999 8 456 889999999999751 24
Q ss_pred CChhcHHHHHHHHHHHhhhhhcCCchhHhHHHHHHHHHH-HhcCCCCChHHHHHHHHHHHHHhCCCCcccc
Q 045399 385 PAEENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKE-LTTNPQLAPRLRFMVRDVLDLRANNWVPRRE 454 (802)
Q Consensus 385 p~Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~mD~~F~rL~~-l~~~~~lssRIRFML~dvidLR~n~W~~r~~ 454 (802)
|+|++|||||+||+|||+.||+..+ ..||+||.+|++ ++++.++|+||||||+||||||+|||++++.
T Consensus 145 p~Ee~lEcl~~LL~tvG~~Ld~~~~--~~md~~f~~l~~~l~~~~~ls~RiRfml~dlieLR~~~W~~~~~ 213 (224)
T 2i2o_A 145 KNEEEVDCLVLQLHRIGDQLEKMNV--QLMDELFNLLRDGFLLQEDLSSMGRLLLLEILEFRAGGWKLSDT 213 (224)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHCCCCCCch
Confidence 7899999999999999999998654 789999999999 7888899999999999999999999999875
No 5
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=99.97 E-value=4.5e-32 Score=268.15 Aligned_cols=151 Identities=22% Similarity=0.257 Sum_probs=142.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhCCCcCHHH
Q 045399 632 GKLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARD 711 (802)
Q Consensus 632 ~~~s~eel~kk~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~~~~re~vs~LL~~L~~~~lls~~q 711 (802)
|.+|+||++++++++|+|||+++|++||++||+||++|.|||+||+.+|++|||+++.+||++++||++|+. ++||++|
T Consensus 2 p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~ 80 (165)
T 2rg8_A 2 LPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTD 80 (165)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999976 9999999
Q ss_pred HHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhCCC
Q 045399 712 IGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSPG 784 (802)
Q Consensus 712 ~~~Gf~~vle~LdDl~iDiP~A~~~La~~iar~I~d~~l~~~~l~~~~~~~e~~~~~~~v~~a~l~~l~~~~G 784 (802)
|.+||..+++.|||++||+|+||+|||+|+||+|.++++++.+|.+++.+.++...++++..|- ..|+...|
T Consensus 81 i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~-~ll~~~~~ 152 (165)
T 2rg8_A 81 VEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKAT-VLLSMSKG 152 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTTCCCHHHHHHHHHHH-HHHHTC--
T ss_pred HHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhccCchHHHHHHHHHH-HHHhcccc
Confidence 9999999999999999999999999999999999999999999999999988888888887777 66655533
No 6
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=99.97 E-value=1.1e-30 Score=254.99 Aligned_cols=137 Identities=23% Similarity=0.348 Sum_probs=122.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCC-CCChHHHHHHHHHHHhCCCcCHHHHH
Q 045399 635 NLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKN-PPCVDPVTKLLEYLFTQKVITARDIG 713 (802)
Q Consensus 635 s~eel~kk~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~-~~~re~vs~LL~~L~~~~lls~~q~~ 713 (802)
+.|+++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||++ +.+|+++++||.+|+++++||++||.
T Consensus 4 ~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 4 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 46799999999999999999999999999999999999999999999999996 78899999999999999999999999
Q ss_pred HHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhHhHHHHHHHHHH
Q 045399 714 TGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDA 774 (802)
Q Consensus 714 ~Gf~~vle~LdDl~iDiP~A~~~La~~iar~I~d~~l~~~~l~~~~~~~e~~~~~~~v~~a 774 (802)
+||.+|++.|+||+||+|+||++||+|+++||.+|+|+++++..+ ..++ .+|++|+.+
T Consensus 84 ~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~--p~~~-~~rk~f~s~ 141 (152)
T 2ion_A 84 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC--PSRS-RGRKRFVSE 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC--TTC-----------
T ss_pred HHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhC--CCcc-cchhhhccc
Confidence 999999999999999999999999999999999999999999985 5555 888887654
No 7
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=99.96 E-value=2.5e-30 Score=245.91 Aligned_cols=124 Identities=24% Similarity=0.376 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCC-CCChHHHHHHHHHHHhCCCcCHHHHH
Q 045399 635 NLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKN-PPCVDPVTKLLEYLFTQKVITARDIG 713 (802)
Q Consensus 635 s~eel~kk~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~-~~~re~vs~LL~~L~~~~lls~~q~~ 713 (802)
+.|+++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||++ +.+|+++++||.+|+++|+||.+||.
T Consensus 2 p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 35799999999999999999999999999999999999999999999999998 48899999999999999999999999
Q ss_pred HHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHhCCCCHHHHHHH
Q 045399 714 TGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEI 758 (802)
Q Consensus 714 ~Gf~~vle~LdDl~iDiP~A~~~La~~iar~I~d~~l~~~~l~~~ 758 (802)
+||.+|++.|+||+||+|+||++||+|++++|.+|+++++|+..+
T Consensus 82 ~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~ 126 (129)
T 2nsz_A 82 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred HHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhC
Confidence 999999999999999999999999999999999999999998754
No 8
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.95 E-value=3.2e-28 Score=266.32 Aligned_cols=158 Identities=24% Similarity=0.379 Sum_probs=150.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhCCCcCHHH
Q 045399 632 GKLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARD 711 (802)
Q Consensus 632 ~~~s~eel~kk~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~~~~re~vs~LL~~L~~~~lls~~q 711 (802)
+.+|+|+++++++++|+|||+++|++||++||+||++|+|||+||+.+|+++||+++.+|+++++||++|+++++||.+|
T Consensus 3 ~~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~ 82 (339)
T 1ug3_A 3 AALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHhCCCCH-HHHHHHHHhhHhHHHHHHHHHHHHHHHHhCCChhhhh
Q 045399 712 IGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDF-KVVQEILKKMEEEMYRKSVLDAALRIISCSPGQNILD 789 (802)
Q Consensus 712 ~~~Gf~~vle~LdDl~iDiP~A~~~La~~iar~I~d~~l~~-~~l~~~~~~~e~~~~~~~v~~a~l~~l~~~~G~~v~~ 789 (802)
|.+||.++++.++||.+|+|+||.+||+|++++|.+|++++ .++..+++.+.+.+.+..++.++++.+..+.|..-+.
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~ 161 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVG 161 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999 7778888888999999999999999998887754443
No 9
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=99.94 E-value=2.4e-27 Score=260.00 Aligned_cols=148 Identities=21% Similarity=0.244 Sum_probs=129.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhCCCcCHH
Q 045399 631 AGKLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITAR 710 (802)
Q Consensus 631 ~~~~s~eel~kk~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~~~~re~vs~LL~~L~~~~lls~~ 710 (802)
.|.+|++|++|++++||+|||+++|++||+.||+||++|.||+.||+.+|++||||++.+||++++||++|+. ++||++
T Consensus 45 ~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~ 123 (358)
T 3eiq_C 45 VLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTN 123 (358)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999995 999999
Q ss_pred HHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 045399 711 DIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIIS 780 (802)
Q Consensus 711 q~~~Gf~~vle~LdDl~iDiP~A~~~La~~iar~I~d~~l~~~~l~~~~~~~e~~~~~~~v~~a~l~~l~ 780 (802)
||.+||..+++.|+|++||+|+||+|||.||||+|.+++|++.||.++...+.+...+.++-.| -..|+
T Consensus 124 ~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a-~~~L~ 192 (358)
T 3eiq_C 124 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKA-TVLLS 192 (358)
T ss_dssp HHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHH-HHHHh
Confidence 9999999999999999999999999999999999999999999999987777766554444333 34443
No 10
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=99.93 E-value=1.7e-26 Score=249.11 Aligned_cols=132 Identities=23% Similarity=0.365 Sum_probs=125.3
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCC-CCChHHHHHHHHHHHhC
Q 045399 627 PLRP-AGKLNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKN-PPCVDPVTKLLEYLFTQ 704 (802)
Q Consensus 627 ~~~~-~~~~s~eel~kk~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~-~~~re~vs~LL~~L~~~ 704 (802)
.|+. ...+++++++++++++|+|||+++|++||++||+||+.|+|||+||+.+|+++||++ +.+|+++++||++|+++
T Consensus 152 ~WG~~~~~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 152 VWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp SSCCCSTTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 4552 334799999999999999999999999999999999999999999999999999997 78899999999999999
Q ss_pred CCcCHHHHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHhCCCCHHHHHHH
Q 045399 705 KVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEI 758 (802)
Q Consensus 705 ~lls~~q~~~Gf~~vle~LdDl~iDiP~A~~~La~~iar~I~d~~l~~~~l~~~ 758 (802)
++||.+||.+||.+|++.|+|++||+|+||++||+|+++||.+|+|++.++..+
T Consensus 232 ~~ls~~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~ 285 (307)
T 2zu6_B 232 STITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 285 (307)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999876
No 11
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.5e-26 Score=251.32 Aligned_cols=151 Identities=17% Similarity=0.266 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCC-ChHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhCCCcCHHHH
Q 045399 634 LNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPG-YHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDI 712 (802)
Q Consensus 634 ~s~eel~kk~~siL~EY~~~~D~~EA~~cvkEL~~p~-~~~e~V~~~I~~aLEk~~~~re~vs~LL~~L~~~~lls~~q~ 712 (802)
-+.||+.|++++||+|||+++|++||++||+||++|. |||+||+.+|+++||+++.+||++++||++|+.+++||.+||
T Consensus 6 ~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 6 HSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4789999999999999999999999999999999995 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhCCChhhh
Q 045399 713 GTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCSPGQNIL 788 (802)
Q Consensus 713 ~~Gf~~vle~LdDl~iDiP~A~~~La~~iar~I~d~~l~~~~l~~~~~~~e~~~~~~~v~~a~l~~l~~~~G~~v~ 788 (802)
.+||.++++.++|+.||+|+||.|||+|+||+|.++++++.+|...+.. |....++-++++.+..++|...+
T Consensus 86 ~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~----G~~~~l~l~vl~~~~k~~G~~~l 157 (364)
T 3l6a_A 86 MQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLES----GTHFPLFLLCLQQLAKLQDREWL 157 (364)
T ss_dssp HHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGG----GTTTTHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcc----cchHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999999999999999999999988754 33446777889999888885443
No 12
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=99.93 E-value=1.3e-26 Score=249.87 Aligned_cols=143 Identities=22% Similarity=0.257 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhCCCcCHHHHHHHHH
Q 045399 638 ELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCL 717 (802)
Q Consensus 638 el~kk~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~~~~re~vs~LL~~L~~~~lls~~q~~~Gf~ 717 (802)
|++|+++++|+|||+++|++||+.||+||++|.|||+||+.+|++|||+++.+||++++||++|+. ++||++||.+||.
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~ 79 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFD 79 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999995 8999999999999
Q ss_pred HHhhcchhhhcCCCchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhC
Q 045399 718 LFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKMEEEMYRKSVLDAALRIISCS 782 (802)
Q Consensus 718 ~vle~LdDl~iDiP~A~~~La~~iar~I~d~~l~~~~l~~~~~~~e~~~~~~~v~~a~l~~l~~~ 782 (802)
.+++.++|+++|+|+||++||.|+||+|.|++||+.||.++..+.++...+.++..| -..|+..
T Consensus 80 ~ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a-~~~l~~~ 143 (307)
T 2zu6_B 80 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKA-TVLLSMS 143 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHH-HHHHHTC
T ss_pred HHHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHH-HHHhccc
Confidence 999999999999999999999999999999999999999999888776666554444 3556544
No 13
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=99.92 E-value=2.1e-25 Score=244.60 Aligned_cols=133 Identities=23% Similarity=0.354 Sum_probs=125.0
Q ss_pred CCCCCCCC-CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCC-CCChHHHHHHHHHHHh
Q 045399 626 KPLRPAGK-LNLDELCRKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKN-PPCVDPVTKLLEYLFT 703 (802)
Q Consensus 626 ~~~~~~~~-~s~eel~kk~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~-~~~re~vs~LL~~L~~ 703 (802)
..|+.... .+.+++++|++++|+|||+++|++||++||+||+.|+|||+||+.+|+++||++ +.+|+++++||.+|++
T Consensus 202 ~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~ 281 (358)
T 3eiq_C 202 SVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 281 (358)
T ss_dssp -CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 45664444 378999999999999999999999999999999999999999999999999997 6899999999999999
Q ss_pred CCCcCHHHHHHHHHHHhhcchhhhcCCCchhHHHHHHHHHHHHhCCCCHHHHHHH
Q 045399 704 QKVITARDIGTGCLLFGALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEI 758 (802)
Q Consensus 704 ~~lls~~q~~~Gf~~vle~LdDl~iDiP~A~~~La~~iar~I~d~~l~~~~l~~~ 758 (802)
+++||.+||.+||.+|++.|+||+||||+||+|||+|+++||.+|+|++.|+...
T Consensus 282 ~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~ 336 (358)
T 3eiq_C 282 SSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 336 (358)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999998765
No 14
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.71 E-value=6.2e-16 Score=161.11 Aligned_cols=217 Identities=16% Similarity=0.258 Sum_probs=159.2
Q ss_pred HHHHHHHh-hcCCHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCCchHHH--HHHHHHHhhhCCCCCCCCCCCc
Q 045399 223 LKTVKGIL-NKLTPEKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMY--AQLCSDLNEKLPPFPSDEPGGK 299 (802)
Q Consensus 223 ~r~Vk~IL-NKLTpenfd~l~~qLl~l~I~s~e~Lk~VI~lIFeKAi~Ep~fs~~Y--A~LC~~L~~~lp~~~~~e~~~~ 299 (802)
...|+.+| -.|+..+.+.++++|..+++.+.++.+.+++. |-|+. .-.|..++ |.|...|....|
T Consensus 5 ~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~-l~~~~-~~ky~nI~~lA~ll~~L~~~~~---------- 72 (248)
T 1uw4_B 5 QEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICC-MINIW-NVKYNSIHCVANLLAGLVLYQE---------- 72 (248)
T ss_dssp HHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHH-HHCGG-GSCGGGHHHHHHHHHHHTTTCH----------
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHH-hcchh-hcccchHHHHHHHHHHHHhhCh----------
Confidence 34556655 67778899999999999999888876555554 44443 33566654 667777766533
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHHhcCCchHHHHHHhHHHHHhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHhcC
Q 045399 300 EITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGH 379 (802)
Q Consensus 300 ~~~Frr~LL~rcQeeFe~~~~~~~e~~~~~~~e~E~E~~dke~~~Krr~lGnIrFIGELyk~~ml~e~Im~~cI~~LL~~ 379 (802)
.|--.++...-|+.... +|.++ .+.++|.+++|+||||||+.+||+..+|++|+..|+.-
T Consensus 73 --~~~i~vVD~vlE~Ir~g----------------LE~n~--~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~f 132 (248)
T 1uw4_B 73 --DVGIHVVDGVLEDIRLG----------------MEVNQ--PKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSF 132 (248)
T ss_dssp --HHHHHHHHHHHHHHHHH----------------HHHCC--GGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred --HHhhhhHHHHHHHHHHH----------------HhcCc--HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcC
Confidence 35555555444444433 22222 23457889999999999999999999999999999972
Q ss_pred --CCCCCCChhc-------HHHHHHHHHHHhhhhhcCCchhHhHHHHHHHHHHHh----------cCCCCChHHHHHHHH
Q 045399 380 --DSSTCPAEEN-------VEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELT----------TNPQLAPRLRFMVRD 440 (802)
Q Consensus 380 --~~~~~p~Ee~-------IE~Lc~LL~tiGk~Ld~~~k~~~~mD~~F~rL~~l~----------~~~~lssRIRFML~d 440 (802)
.....+++.+ |+++|.||.|||..++.. ..+..||.|+..++... +...+|.+|+||++|
T Consensus 133 g~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~~-~~~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D 211 (248)
T 1uw4_B 133 GVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRG-SSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISD 211 (248)
T ss_dssp TCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSH-HHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHHHH
Confidence 1111234555 999999999999999963 45678999999998874 345799999999999
Q ss_pred HHHH-HhCCCCccccccCcccHHHHHHHHHHhc
Q 045399 441 VLDL-RANNWVPRREEVTAKTITEIHSEAEKNL 472 (802)
Q Consensus 441 vidL-R~n~W~~r~~~~~pkti~eI~~ea~~~~ 472 (802)
++++ |.+-|..+.-++.++.+++|.++....+
T Consensus 212 ~~~~lrp~~~~~~~~eEa~~~v~~le~~~~~~~ 244 (248)
T 1uw4_B 212 TLELLRPKIKLCNSLEESIRQVQDLEREFLIKL 244 (248)
T ss_dssp HHHHHCTTCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcccCCHHHHHHHHHHHHHHHHHHh
Confidence 9999 8888888887778888999977654443
No 15
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=98.95 E-value=5.9e-09 Score=124.85 Aligned_cols=197 Identities=15% Similarity=0.232 Sum_probs=147.0
Q ss_pred ChHHHHHHHHHHHhhcCCH-------hhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhhCC
Q 045399 217 SEKERVLKTVKGILNKLTP-------EKFDLLKGQLIDSGITSADILKEVISLIFDKAVLEPTFCPMYAQLCSDLNEKLP 289 (802)
Q Consensus 217 se~e~l~r~Vk~ILNKLTp-------enfd~l~~qLl~l~I~s~e~Lk~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~lp 289 (802)
++.+.+..++++++-||.. +|++.|+..|.+ ++. ..-..+++.|+.-++..|.++.+||.|...|+.+.|
T Consensus 3 ~~~~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~-~l~--~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~p 79 (771)
T 1h2v_C 3 SDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA-DLP--NYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNY 79 (771)
T ss_dssp -------CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHH-THH--HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCH
T ss_pred CCcccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH-HHH--hhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCCh
Confidence 4567788999999999997 555555555532 222 233347888888888899999999999999998643
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHhhhhhhHHHHHhcCCchHHHHHHhHHHHHhhhhhhHHHHHHHHHhcCCCCHHHH
Q 045399 290 PFPSDEPGGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIV 369 (802)
Q Consensus 290 ~~~~~e~~~~~~~Frr~LL~rcQeeFe~~~~~~~e~~~~~~~e~E~E~~dke~~~Krr~lGnIrFIGELyk~~ml~e~Im 369 (802)
.|...++.++...|...-+ +.+ ++++...++||++|++.+|+++..+
T Consensus 80 ------------e~G~~lv~~l~~~f~~~l~----------------~~~-----~~~~k~~lrFLa~L~n~~Vv~~~~i 126 (771)
T 1h2v_C 80 ------------NFGGEFVEAMIRQLKESLK----------------ANN-----YNEAVYLVRFLSDLVNCHVIAAPSM 126 (771)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHH----------------TTC-----HHHHHHHHHHHHHHHHTTSBCHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHHHH----------------ccC-----hHHHHHHHHHHHHhccCCeecHHHH
Confidence 5778888888888887622 111 2467789999999999999999999
Q ss_pred HHHHHHHhcCCC-CCCCC---hhcHHHHHHHHHHHhhhhhcCCchhHhHHHHHHHHHHHhcCC-C---------------
Q 045399 370 HHIVQELLGHDS-STCPA---EENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTNP-Q--------------- 429 (802)
Q Consensus 370 ~~cI~~LL~~~~-~~~p~---Ee~IE~Lc~LL~tiGk~Ld~~~k~~~~mD~~F~rL~~l~~~~-~--------------- 429 (802)
..++..|+.... ...+. ++.+.|++..|..||+.|-+. .+..++.+|++++.++... +
T Consensus 127 l~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~--~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~ 204 (771)
T 1h2v_C 127 VAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEK--KDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPH 204 (771)
T ss_dssp HHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSC
T ss_pred HHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCC
Confidence 999999998421 11232 568899999999999999763 3467899999999866332 2
Q ss_pred -CChHHHHHHHHHHHHHhCCCCc
Q 045399 430 -LAPRLRFMVRDVLDLRANNWVP 451 (802)
Q Consensus 430 -lssRIRFML~dvidLR~n~W~~ 451 (802)
...++.+|+..|..+|+++|+.
T Consensus 205 ~~~~~l~~L~~ql~~lr~~~w~~ 227 (771)
T 1h2v_C 205 PQEEYLDCLWAQIQKLKKDRWQE 227 (771)
T ss_dssp CCCBHHHHHHHHHHHHHHTTTCC
T ss_pred chhhHHHHHHHHHHHHHHCCCCC
Confidence 2479999999999999999974
No 16
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=95.21 E-value=0.097 Score=54.30 Aligned_cols=192 Identities=17% Similarity=0.224 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHhhcCCHhhHHHHHHHHHHhccCCHHHHHHHHHH-HHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCC
Q 045399 218 EKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVISL-IFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEP 296 (802)
Q Consensus 218 e~e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~I~s~e~Lk~VI~l-IFeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e~ 296 (802)
+.+.+..+|-.|+|.||++|++.-+.+|.++ + +++...=++.. |.++|..||+|-.+|.+|+..|...
T Consensus 30 P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~-l-~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~--------- 98 (249)
T 4b89_A 30 APKDVVEKVLFVLNNVTLANLNNKVDELKKS-L-TPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSG--------- 98 (249)
T ss_dssp CCHHHHHHHHHHHHHCCTTTHHHHHHHHHHH-C-CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH---------
T ss_pred cCHHHHhhhhhhhhcCChHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCH---------
Confidence 4578999999999999999999999999986 2 34445555554 6679999999999999999998742
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhhHHHHHhcCCchHHHHHHhHHHHHhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 045399 297 GGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQEL 376 (802)
Q Consensus 297 ~~~~~~Frr~LL~rcQeeFe~~~~~~~e~~~~~~~e~E~E~~dke~~~Krr~lGnIrFIGELyk~~ml~e~Im~~cI~~L 376 (802)
.+-+.+++.. |.....+ + ...+ ....+. ... +-|| .+||-|-.-.=-+-..-+-.++.|
T Consensus 99 -----~L~~~vl~~T---~~~i~~L---L---~~~~--i~~~eR-s~L--KNLG--~WLG~iTLarNkPI~~~~ld~K~L 157 (249)
T 4b89_A 99 -----LLHQFMVNVT---LRQLFVL---L---STKD--EQAIDK-KHL--KNLA--SWLGCITLALNKPIKHKNIAFREM 157 (249)
T ss_dssp -----HHHHHHHHHH---HHHHHHH---H---TBSC--GGGSCH-HHH--HHHH--HHHHHHTGGGTCCCCTTTBCHHHH
T ss_pred -----HHHHHHHHHH---HHHHHHH---h---hhcc--cChHHH-HHH--HHHH--HHHhHHHHhcCCCchhcccCHHHH
Confidence 2233333311 1111111 0 0000 000011 112 2233 567766543211110001122233
Q ss_pred hcC-CCCCCCChhcHHHHHHHHHHHh--hhhhcCCchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 045399 377 LGH-DSSTCPAEENVEAICQFVNTIG--KQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDLR 445 (802)
Q Consensus 377 L~~-~~~~~p~Ee~IE~Lc~LL~tiG--k~Ld~~~k~~~~mD~~F~rL~~l~~~~~lssRIRFML~dvidLR 445 (802)
|-. +... --+.-|-.+|++|..|- +.+. + +..++-.++.-|.++-....+---++|-|+.++.-=
T Consensus 158 L~eay~~g-~L~~vIPFVcKvLe~~k~SkiFk--P-PNPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l 225 (249)
T 4b89_A 158 LIEAYKEN-RLEIVVPFVTKILQRASESKIFK--P-PNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSF 225 (249)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHGGGTTCSSSS--T-TCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcC-CeEEEeeHHHHHHHhcccCCccC--C-CCchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHc
Confidence 321 0000 01234566677776663 2222 1 125667789999998887888899999999887643
No 17
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=93.66 E-value=1.2 Score=45.66 Aligned_cols=190 Identities=19% Similarity=0.296 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhhcCCHhhHHHHHHHHHHhccCCHHHHHHHHH-HHHHHhhcCCCchHHHHHHHHHHhhhCCCCCCCCCCC
Q 045399 220 ERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKEVIS-LIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGG 298 (802)
Q Consensus 220 e~l~r~Vk~ILNKLTpenfd~l~~qLl~l~I~s~e~Lk~VI~-lIFeKAi~Ep~fs~~YA~LC~~L~~~lp~~~~~e~~~ 298 (802)
|.+..+|-.|+|.||++|++.-+++|.++ + +++...=++. +|.++|-.||+|-.+|++|...|...
T Consensus 5 e~v~dki~Fi~NNls~~N~~~k~~elk~~-l-~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~----------- 71 (229)
T 4gmj_A 5 ENIQEKIAFIFNNLSQSNMTQKVEELKET-V-KEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNP----------- 71 (229)
T ss_dssp HHHHHHHHHHHHSCCSSTHHHHHHHHHHH-S-CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH-----------
T ss_pred HHhhhhheeehhcCCHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChH-----------
Confidence 67889999999999999999999999885 2 2333333443 46677888999999999999887532
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhHHHHHhcCCchHHHHHHhHHHHHhhhhhhHHHHHHHHHhcC--CCCHHHHHHHHHHH
Q 045399 299 KEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQK--MVPEKIVHHIVQEL 376 (802)
Q Consensus 299 ~~~~Frr~LL~rcQeeFe~~~~~~~e~~~~~~~e~E~E~~dke~~~Krr~lGnIrFIGELyk~~--ml~e~Im~~cI~~L 376 (802)
.+-+.+++ +.|.....+... ++ +... -.++ ... +-+| .+||-|-.-. -|..+ +-.++.|
T Consensus 72 ---~l~~~vl~---~T~~~i~~LL~s-~~-~~~~-~~eR----~~L--KNLG--~WLG~lTLarnkPI~~~--~l~~K~L 132 (229)
T 4gmj_A 72 ---EFNKMVLN---ETYRNIKVLLTS-DK-AAAN-FSDR----SLL--KNLG--HWLGMITLAKNKPILHT--DLDVKSL 132 (229)
T ss_dssp ---HHHHHHHH---HHHHHHHHHHTS-CC-CTTC-HHHH----HHH--HHHH--HHHHHHTGGGTCCCCTT--TCCHHHH
T ss_pred ---HHHHHHHH---HHHHHHHHHHhh-cc-cccc-hHHH----HHH--HHHH--HHHHHHHHccCCCchhc--ccCHHHH
Confidence 23344444 223322111100 00 0000 0011 122 2233 5677665432 11111 1122233
Q ss_pred hcC-CCCCC-CChhcHHHHHHHHHHHh--hhhhcCCchhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 045399 377 LGH-DSSTC-PAEENVEAICQFVNTIG--KQLDEGPKSRRINDMYFSRLKELTTNPQLAPRLRFMVRDVLDL 444 (802)
Q Consensus 377 L~~-~~~~~-p~Ee~IE~Lc~LL~tiG--k~Ld~~~k~~~~mD~~F~rL~~l~~~~~lssRIRFML~dvidL 444 (802)
|-. +.+.+ --.--|-.+|++|..|- +.+. + +..++-.++.-|.++-....+.--++|=|+-++.-
T Consensus 133 L~eay~~g~~rL~~viPFVcKvLe~~~~S~iFk--P-PNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~ 201 (229)
T 4gmj_A 133 LLEAYVKGQQELLYVVPFVAKVLESSIRSVVFR--P-PNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKN 201 (229)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHTTTTCTTTS--T-TCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCceEEEeehhHHHHHHhcccCCcCC--C-CChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHH
Confidence 321 00000 00012444566665552 2222 1 12566688999999888888888999998888754
No 18
>1rf8_B Eukaryotic initiation factor 4F subunit P150; protein biosynthesis, translation regulat biosynthetic protein, translation; HET: MTN M7G; NMR {Saccharomyces cerevisiae} SCOP: a.210.1.1
Probab=89.76 E-value=0.26 Score=44.06 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=26.3
Q ss_pred CCCCCCCCCCC-cccccCHHHHHHHHHhh-cCChHHHHH
Q 045399 68 SATGDSRFEGR-ERVRYTREQLLQLREAA-VIDDDILKI 104 (802)
Q Consensus 68 ~~~~~~~~~~~-~~~~y~~~~l~~~~~~~-~~p~~~~~~ 104 (802)
+..-|++++.. -+.+|.++|||||++.| .-|+.=|+.
T Consensus 48 I~sPdp~ln~~~~Kf~Ydp~FLLQF~~v~~~kpd~~w~~ 86 (100)
T 1rf8_B 48 IEGPDIKYKKEHVKYTYGPTFLLQFKDKLNVKADAEWVQ 86 (100)
T ss_dssp CCCSSTTGGGSSCSSCCCHHHHHHHHHHHCCCCSSHHHH
T ss_pred CCCCCHHHccCCCccccChHHHHHHHHHhccCCCHHHHH
Confidence 44556666653 35799999999999999 555554543
No 19
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=86.13 E-value=0.25 Score=31.74 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=14.9
Q ss_pred CCcccccCHHHHHHHHH
Q 045399 77 GRERVRYTREQLLQLRE 93 (802)
Q Consensus 77 ~~~~~~y~~~~l~~~~~ 93 (802)
++.||-|.|+|||+.+.
T Consensus 2 GGTrIiYdR~fLl~~rn 18 (21)
T 3hxi_C 2 GSGRIIYDRKFLMECRN 18 (26)
T ss_pred CceEEEEeHHHHHHhcc
Confidence 57899999999999864
No 20
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.09 E-value=21 Score=40.51 Aligned_cols=160 Identities=20% Similarity=0.260 Sum_probs=100.8
Q ss_pred HHHHHHHHHhhcCCHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhcCCCc----hHHHHHHHHHHhhhCCCCCCCC
Q 045399 221 RVLKTVKGILNKLTPEKFDLLKGQLIDSGI-TSADILKEVISLIFDKAVLEPTF----CPMYAQLCSDLNEKLPPFPSDE 295 (802)
Q Consensus 221 ~l~r~Vk~ILNKLTpenfd~l~~qLl~l~I-~s~e~Lk~VI~lIFeKAi~Ep~f----s~~YA~LC~~L~~~lp~~~~~e 295 (802)
-+.-.++.+|-.+|-+.|+.++.=|-.+.+ .+..-.+.++.+|.++|=.+..| ...+.+|...+...+|-|..
T Consensus 177 ~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~-- 254 (507)
T 3u0r_A 177 LILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSK-- 254 (507)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBT--
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhcc--
Confidence 467789999999999999999966655554 56777889999999998654444 46778898999888887742
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhhHHHHHhcCCchHHHHHHhHHHHHhhhhhhHHHHHHHHHhcCC-CCH--HHHHHH
Q 045399 296 PGGKEITFKRVLLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQKM-VPE--KIVHHI 372 (802)
Q Consensus 296 ~~~~~~~Frr~LL~rcQeeFe~~~~~~~e~~~~~~~e~E~E~~dke~~~Krr~lGnIrFIGELyk~~m-l~e--~Im~~c 372 (802)
+...+.|-.++.++ -|-.. ..++..+.+. + +-+-.++.++|+--+-- +.. ..+-.+
T Consensus 255 -~v~StkFv~y~~~k---IlP~l-------~~L~e~~~~~---~-------~kL~LLK~lAE~s~~~~~~e~a~~~l~~i 313 (507)
T 3u0r_A 255 -NVHSTRFVTYFCEQ---VLPNL-------GTLTTPVEGL---D-------IQLEVLKLLAEMSSFCGDMEKLETNLRKL 313 (507)
T ss_dssp -TBCCHHHHHHHHHH---TGGGT-------TCCCCC--CC---C-------HHHHHHHHHHHHHTTCCCCTTHHHHHHHH
T ss_pred -CCChHHHHHHHHHh---hccch-------hhccccccch---H-------HHHHHHHHHHHHccCCCccchHHHHHHHH
Confidence 22345566666543 23221 2233322111 1 12468888999987643 432 233334
Q ss_pred HHHHhcCCCCCCCCh----------------hcHHHHHHHHHHHhhhh
Q 045399 373 VQELLGHDSSTCPAE----------------ENVEAICQFVNTIGKQL 404 (802)
Q Consensus 373 I~~LL~~~~~~~p~E----------------e~IE~Lc~LL~tiGk~L 404 (802)
...|+.--+ ..|++ -.||||.-.|.+.|++.
T Consensus 314 y~~L~~ymP-~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~ 360 (507)
T 3u0r_A 314 FDKLLEYMP-LPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKL 360 (507)
T ss_dssp HHHHHTTSC-CCC--------------CCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCC-CCcccccccccccccCcccchhHHHHHHHHHHHHhhhC
Confidence 444443211 11221 15899999999999874
No 21
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=77.33 E-value=66 Score=34.10 Aligned_cols=172 Identities=12% Similarity=0.135 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhcCC--HhhHHHHHHHHHHhc--c-CCHH----HHHHHHHHHHHHhh----cCCCchHHHHHHHHHHhh
Q 045399 220 ERVLKTVKGILNKLT--PEKFDLLKGQLIDSG--I-TSAD----ILKEVISLIFDKAV----LEPTFCPMYAQLCSDLNE 286 (802)
Q Consensus 220 e~l~r~Vk~ILNKLT--penfd~l~~qLl~l~--I-~s~e----~Lk~VI~lIFeKAi----~Ep~fs~~YA~LC~~L~~ 286 (802)
-.+.|+|+-.+|+|| .+.+..++.+|.++- . .+.. .|..+.+.|...|. ..|..+.-||.++..|..
T Consensus 42 ~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~ 121 (297)
T 3pev_B 42 SRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLV 121 (297)
T ss_dssp HHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHH
Confidence 358899999999998 567888888888751 1 1111 33334444444332 358888999999999888
Q ss_pred hCCCCCCCCCCCchhhHHHHHHHHHHHHH--hhhh--h-hHHHH-HhcC---CchHHHHHHhHHHHHhhhhhhHHHHHHH
Q 045399 287 KLPPFPSDEPGGKEITFKRVLLNICQEAF--EGAD--K-LREEV-RQMT---APDQESERRDKERLVKLRTLGNIRLIGE 357 (802)
Q Consensus 287 ~lp~~~~~e~~~~~~~Frr~LL~rcQeeF--e~~~--~-~~~e~-~~~~---~~e~E~E~~dke~~~Krr~lGnIrFIGE 357 (802)
.+|+ |..+|+.+..+.- --.. . ..++- ..+- ..+...|. +...-.|+-|.+++-+-
T Consensus 122 ~~p~------------~~dillA~l~k~CP~~vp~~~~~~teegr~~mG~~~~~dg~~E~---~~~y~~Rm~Gi~~lyAA 186 (297)
T 3pev_B 122 QFPE------------LQELFMARLVKKCPFVIGFTCEIDTEKGRQNMGWKRNNENKWED---NTSYDERMGGILSLFAI 186 (297)
T ss_dssp HSTT------------HHHHHHHHHHHHCGGGGTCCCCCSSHHHHHHTTCCBCTTSCBCC---HHHHHHHHHHHHHHHHH
T ss_pred hCcc------------HHHHHHHHHhhcCCcccccCCCcccHHHHHHcCCeeCCCCCccc---HHHHHHHHHHHHHHHHH
Confidence 7664 4556665544331 1000 0 00111 1110 01111111 12234688999999999
Q ss_pred HHhcCC-----------CCHHHHHHHHHHHhcCCCCCCCChhcHHHHHHHHHHHhhhhhcC
Q 045399 358 LLKQKM-----------VPEKIVHHIVQELLGHDSSTCPAEENVEAICQFVNTIGKQLDEG 407 (802)
Q Consensus 358 Lyk~~m-----------l~e~Im~~cI~~LL~~~~~~~p~Ee~IE~Lc~LL~tiGk~Ld~~ 407 (802)
+..... .+-.-.=..+..+|+.... ..+.-...+|..+|+++|..|-..
T Consensus 187 I~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~-~~t~t~~~vL~~~Le~ag~~l~~~ 246 (297)
T 3pev_B 187 ITRLQLPQEFITTTSHPFPIALSWHILARICNTPLN-LITNTHFVILGSWWDAAAVQFLQA 246 (297)
T ss_dssp HHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGG-GCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcccccccCCCCCCchHHHHHHHHHhCCCHH-hhcccHHHHHHHHHHHHHHHHHHH
Confidence 986641 2223344556666664210 012223458889999999998753
No 22
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=50.03 E-value=42 Score=37.79 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhCCCCChH-HHHHHHHHHhhcCCC--------CChHHHHHHHHHHHhCCCcCHHH
Q 045399 643 TISLLEEYFNIRVLEEALMCVEELKSPGYHP-EVVKEAISLALEKNP--------PCVDPVTKLLEYLFTQKVITARD 711 (802)
Q Consensus 643 ~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~-e~V~~~I~~aLEk~~--------~~re~vs~LL~~L~~~~lls~~q 711 (802)
...+|+-|-..||+++|...+.++......| .++...+..++-+.. ...+.+.+||..+...|+.+...
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4567888999999999999999986543332 344445555543321 12356678888888887654433
No 23
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=40.06 E-value=62 Score=31.37 Aligned_cols=107 Identities=10% Similarity=0.148 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCCCCh--hcHHHHHHHHHHHhhhhhcCCchhHhHHHHHHHHHHHhcC
Q 045399 350 GNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAE--ENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTN 427 (802)
Q Consensus 350 GnIrFIGELyk~~ml~e~Im~~cI~~LL~~~~~~~p~E--e~IE~Lc~LL~tiGk~Ld~~~k~~~~mD~~F~rL~~l~~~ 427 (802)
+.+.-|+++.+.+-...+....+|++-|.+. ++.. ..|..|=.+++.||+.+...-..+. +++.|..++..
T Consensus 32 ~~ileicD~I~~~~~~~k~A~ral~krl~~~---n~~vql~AL~LLd~~vkNCG~~Fh~evas~~----Fl~eL~kl~~~ 104 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQIAVRLLAHKIQSP---QEWEALQALTVLEACMKNCGRRFHNEVGKFR----FLNELIKVVSP 104 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH----HHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH----HHHHHHHHhcc
Confidence 5667889998888666666666666666652 1211 2455666677788988773222223 44556666543
Q ss_pred ----CCCChHHHHHHHHHHHHHhCCCCccccccCcccHHHHHHHHH
Q 045399 428 ----PQLAPRLRFMVRDVLDLRANNWVPRREEVTAKTITEIHSEAE 469 (802)
Q Consensus 428 ----~~lssRIRFML~dvidLR~n~W~~r~~~~~pkti~eI~~ea~ 469 (802)
...+..||-.|..+|.-....... .|+ |.+.+++-.
T Consensus 105 k~~~~~~~~~Vk~kil~li~~W~~~f~~-----~~~-i~~~y~~Lk 144 (171)
T 1juq_A 105 KYLGDRVSEKVKTKVIELLYSWTMALPE-----EAK-IKDAYHMLK 144 (171)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHCTT-----CHH-HHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHcCC-----CcH-HHHHHHHHH
Confidence 357899999999999987654431 243 666665443
No 24
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=36.59 E-value=1.5e+02 Score=34.45 Aligned_cols=89 Identities=7% Similarity=0.161 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCCCC-Ch-HHHHHHHHHHhhcC-----CCCChHH--HHHHHHHHHhCCC
Q 045399 637 DELCRKTISLLEEYFNIR-VLEEALMCVEELKSPG-YH-PEVVKEAISLALEK-----NPPCVDP--VTKLLEYLFTQKV 706 (802)
Q Consensus 637 eel~kk~~siL~EY~~~~-D~~EA~~cvkEL~~p~-~~-~e~V~~~I~~aLEk-----~~~~re~--vs~LL~~L~~~~l 706 (802)
.++++++.+..+.+|+.. .++|++.-++.++... -+ .++..++|..-+|- +=..+|+ ++.|+-.|+..++
T Consensus 445 ~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~L 524 (603)
T 4b8b_A 445 NDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQL 524 (603)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcc
Confidence 479999999999999887 4999999999997643 23 45555555555552 2234455 8999999999999
Q ss_pred cCHHHHHHHHHHHhhcchh
Q 045399 707 ITARDIGTGCLLFGALMDD 725 (802)
Q Consensus 707 ls~~q~~~Gf~~vle~LdD 725 (802)
|+.-.+.-|+.-|++.+-+
T Consensus 525 l~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 525 LRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp SCHHHHHHHHHHHHHHHTS
T ss_pred cCcchHHHHHHHHHHHHhC
Confidence 9999999999999999988
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=36.34 E-value=2.8e+02 Score=27.00 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=57.9
Q ss_pred HHHHHHHHhhCC---CC---ChHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhCCCcCHHHHHHHHHHHhhcchhhhcCC
Q 045399 657 EEALMCVEELKS---PG---YHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDL 730 (802)
Q Consensus 657 ~EA~~cvkEL~~---p~---~~~e~V~~~I~~aLEk~~~~re~vs~LL~~L~~~~lls~~q~~~Gf~~vle~LdDl~iDi 730 (802)
..|..|+..|-. +. |+..++..++...-|++...|+.+...|..++.. ++.+++...+.. .|.+ .-
T Consensus 75 ~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~---~l~~---~~ 146 (242)
T 2qk2_A 75 AMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVE---SLSN---KN 146 (242)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHH---HTTC---SC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH---HHcC---CC
Confidence 477888877632 22 3455666666666677778899999999999874 455666555444 4443 35
Q ss_pred CchhHHHHHHHHHHHHh
Q 045399 731 PRAPNNFGEIIGKLILA 747 (802)
Q Consensus 731 P~A~~~La~~iar~I~d 747 (802)
|.+......+++.++..
T Consensus 147 ~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 147 PSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 89999999999998755
No 26
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=29.21 E-value=1.3e+02 Score=27.40 Aligned_cols=123 Identities=9% Similarity=-0.058 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCC-CCChHHHHHHHHHHHhCCCcCHH
Q 045399 633 KLNLDELCRKTISLLEEYFNIR-VLEEALMCVEELKSPGYHPEVVKEAISLALEKN-PPCVDPVTKLLEYLFTQKVITAR 710 (802)
Q Consensus 633 ~~s~eel~kk~~siL~EY~~~~-D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~-~~~re~vs~LL~~L~~~~lls~~ 710 (802)
..|++.|+++...+= .+. .+..+..-+-+- ..+..++|..+.. .|.+. ...|=.+.-|+.+++...-=...
T Consensus 3 sf~~~~l~~~L~~L~----~s~~sI~~~s~w~l~~--~~~a~~iv~~i~~-~l~~~~~~~KL~~LYLindIl~ns~~~~~ 75 (135)
T 4fu3_A 3 SFSESALEKKLSELS----NSQQSVQTLSLWLIHH--RKHAGPIVSVWHR-ELRKAKSNRKLTFLYLANDVIQNSKRKGP 75 (135)
T ss_dssp CCCHHHHHHHHHHCC----SSTTHHHHHHHHHHHT--GGGHHHHHHHHHH-HHHHSCTTTHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCHHHHHHHHHHcc----ccHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHhcccchhHHHHHHHHHHHHHHHhcCH
Confidence 567888888877651 111 233333332221 1344556655554 45444 44444555666655431101124
Q ss_pred HHHHHHHHHhhcch-hhh-cCCCchhHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 045399 711 DIGTGCLLFGALMD-DVG-IDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKM 762 (802)
Q Consensus 711 q~~~Gf~~vle~Ld-Dl~-iDiP~A~~~La~~iar~I~d~~l~~~~l~~~~~~~ 762 (802)
+|...|..+|..+= ++. ..-+....-+.+++.-.-..++.+..+|..+-..+
T Consensus 76 ~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l 129 (135)
T 4fu3_A 76 EFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSM 129 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 57777776533221 110 01134445555666666566666666666655444
No 27
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=28.16 E-value=63 Score=36.31 Aligned_cols=83 Identities=11% Similarity=-0.008 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhCCCCChH-HHHHHHHHHhhcCCCCChHHHHHHHHHHHhCCCcCHHHHHHHHHHHhh
Q 045399 643 TISLLEEYFNIRVLEEALMCVEELKSPGYHP-EVVKEAISLALEKNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGA 721 (802)
Q Consensus 643 ~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~-e~V~~~I~~aLEk~~~~re~vs~LL~~L~~~~lls~~q~~~Gf~~vle 721 (802)
...+|.-|...+++++|...++++..-...| .++...+..++=+. .+.+.+.+|+..+...|+.+.......+-..+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-GDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 5778899999999999999999986544433 34455555555443 346788899999999988776666666665555
Q ss_pred cchhh
Q 045399 722 LMDDV 726 (802)
Q Consensus 722 ~LdDl 726 (802)
...++
T Consensus 187 ~~g~~ 191 (501)
T 4g26_A 187 DTKNA 191 (501)
T ss_dssp HTTCH
T ss_pred hCCCH
Confidence 55443
No 28
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=27.08 E-value=39 Score=30.13 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHhhCCCCChHHHHHHHHHHhhc---CCCCChHHHHHHHHHHHhCCCcCHHHHHHHHHHHhhcchhhhcCC
Q 045399 654 RVLEEALMCVEELKSPGYHPEVVKEAISLALE---KNPPCVDPVTKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDL 730 (802)
Q Consensus 654 ~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLE---k~~~~re~vs~LL~~L~~~~lls~~q~~~Gf~~vle~LdDl~iDi 730 (802)
.+++|| ++|-.|....++.+.=++..++ ....+.|-+-.-|.-| ++.--+|+..-|.++++.|+|..--|
T Consensus 21 m~VeeA----k~L~D~eni~EmFRsD~E~I~~~f~~G~~t~EEa~~nl~~L---K~YavSQL~~Hy~ri~~~l~d~e~Ki 93 (116)
T 1yoz_A 21 KSVEEA----DKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLL---KTYVVSQLSIHFERLKEFAESKGFKI 93 (116)
T ss_dssp SCGGGH----HHHTCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH---HHHHHHTHHHHHHHHHHHHHTTC---
T ss_pred hhHHHH----HHccCHHHHHHHHHhhHHHHHHHHHcCCccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777 7777666666665554444443 3566666666655554 24556789999999999999999877
Q ss_pred -----CchhHHHHHHHHH
Q 045399 731 -----PRAPNNFGEIIGK 743 (802)
Q Consensus 731 -----P~A~~~La~~iar 743 (802)
|.+-+-+|-+|.|
T Consensus 94 ~kkl~~ev~~~i~~~~~~ 111 (116)
T 1yoz_A 94 EKKLDPEVINEIALYIDR 111 (116)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHhHHHHHHHH
Confidence 4444444444444
No 29
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=26.72 E-value=1.2e+02 Score=28.61 Aligned_cols=105 Identities=11% Similarity=0.173 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCCCChh----cHHHHHHHHHHHhhhhhcCCchhHhHHHHHHHHHHHh
Q 045399 350 GNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAEE----NVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELT 425 (802)
Q Consensus 350 GnIrFIGELyk~~ml~e~Im~~cI~~LL~~~~~~~p~Ee----~IE~Lc~LL~tiGk~Ld~~~k~~~~mD~~F~rL~~l~ 425 (802)
+.|.-|+++.+.+-...+....+|.+-|.+ .+.. .|..|=.+++.||..+...-.++ .+++.|..++
T Consensus 30 ~~ileicD~I~~~~~~pk~a~ral~krl~~-----~n~~v~l~AL~LLe~cvkNCG~~fh~eias~----~Fl~eL~kl~ 100 (149)
T 3g2s_A 30 ASINGFCEQLNEDFEGPPLATRLLAHKIQS-----PQEWEAIQALTVLETCMKSCGKRFHDEVGKF----RFLNELIKVV 100 (149)
T ss_dssp HHHHHHHHHGGGSSSHHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH----HHHHHHHHHH
Confidence 567788999998877677666666666664 2333 45555566677788875321222 3445566665
Q ss_pred cCC----CCChHHHHHHHHHHHHHhCCCCccccccCcccHHHHHHHHH
Q 045399 426 TNP----QLAPRLRFMVRDVLDLRANNWVPRREEVTAKTITEIHSEAE 469 (802)
Q Consensus 426 ~~~----~lssRIRFML~dvidLR~n~W~~r~~~~~pkti~eI~~ea~ 469 (802)
..+ ..+..|+-.|..+|.-....+.. .|+ |.+.+++-.
T Consensus 101 ~~k~~~~~~~~~Vk~kil~li~~W~~~f~~-----~p~-i~~~Y~~Lk 142 (149)
T 3g2s_A 101 SPKYLGSRTSEKVKNKILELLYSWTVGLPE-----EVK-IAEAYQMLK 142 (149)
T ss_dssp CTTTTGGGSCHHHHHHHHHHHHHHHHHCTT-----CHH-HHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhCC-----Cch-HHHHHHHHH
Confidence 532 46889999999999887654421 244 666666543
No 30
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=25.68 E-value=1.2e+02 Score=31.34 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHH---hh---CCCCChHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhCCC
Q 045399 637 DELCRKTISLLEEYFNIRVLEEALMCVE---EL---KSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQKV 706 (802)
Q Consensus 637 eel~kk~~siL~EY~~~~D~~EA~~cvk---EL---~~p~~~~e~V~~~I~~aLEk~~~~re~vs~LL~~L~~~~l 706 (802)
...+.++-++|.+--.+.| ++-+.+++ || +.|.++++|+..++..+.+....-|..++.+|...+.++.
T Consensus 11 ~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~ 85 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV 85 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred ccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999888887 56666655 43 3578999999999998888776778888888888777654
No 31
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=24.81 E-value=2.9e+02 Score=26.27 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=64.3
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCCCCCCh--hcHHHHHHHHHHHhhhhhcCCchhHhHHHHHHHHHHHhcC
Q 045399 350 GNIRLIGELLKQKMVPEKIVHHIVQELLGHDSSTCPAE--ENVEAICQFVNTIGKQLDEGPKSRRINDMYFSRLKELTTN 427 (802)
Q Consensus 350 GnIrFIGELyk~~ml~e~Im~~cI~~LL~~~~~~~p~E--e~IE~Lc~LL~tiGk~Ld~~~k~~~~mD~~F~rL~~l~~~ 427 (802)
+.+.-|+++.+.+-...+....+|++-|.+. +|.. ..|..|=.+++.||..+...-..+..||. |..++.
T Consensus 34 ~~~leicD~I~~~~~~~keA~ral~krl~~~---n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~e----l~~l~~- 105 (163)
T 1x5b_A 34 SLIMDICDKVGSTPNGAKDCLKAIMKRVNHK---VPHVALQALTLLGACVANCGKIFHLEVCSRDFATE----VRAVIK- 105 (163)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHH----HHHHHH-
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH----HHHHHc-
Confidence 4556688888887766776667777777652 1221 14555556677778877632222344544 444444
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCccccccCcccHHHHHHHH
Q 045399 428 PQLAPRLRFMVRDVLDLRANNWVPRREEVTAKTITEIHSEA 468 (802)
Q Consensus 428 ~~lssRIRFML~dvidLR~n~W~~r~~~~~pkti~eI~~ea 468 (802)
++....|+-.|..+|......... +..-.-|.+.+++-
T Consensus 106 ~~~~~~Vk~kil~li~~W~~~f~~---~~~l~~i~~~Y~~L 143 (163)
T 1x5b_A 106 NKAHPKVCEKLKSLMVEWSEEFQK---DPQFSLISATIKSM 143 (163)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTT---CSTTHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcC---CcccHHHHHHHHHH
Confidence 356789999999999876543332 11223466666544
No 32
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=24.62 E-value=2.1e+02 Score=31.02 Aligned_cols=135 Identities=7% Similarity=-0.017 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCC-CChHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Q 045399 641 RKTISLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNP-PCVDPVTKLLEYLFTQKVITARDIGTGCLLF 719 (802)
Q Consensus 641 kk~~siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~~-~~re~vs~LL~~L~~~~lls~~q~~~Gf~~v 719 (802)
+..+.+++.|....+.+|-..++..|.+ ...+.++...+..+|+.+. ...+ +..++..+.. +-...+ .++.=+
T Consensus 252 ~~~~~l~~~y~~s~~~~ek~~ll~aL~~-s~d~~ll~~~L~~~l~~~~ir~qD-~~~~~~~v~~-n~~g~~---~aw~fl 325 (419)
T 3rjo_A 252 EGWDFLYSKYQFSLSSTEKSQIEFALCR-TQNKEKLQWLLDESFKGDKIKTQE-FPQILTLIGR-NPVGYP---LAWQFL 325 (419)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTSSSCGGG-HHHHHHHHHT-STTTHH---HHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhc-CcchHH---HHHHHH
Confidence 3467888999999999999999999976 4568899999999997653 3333 3445555543 333322 233334
Q ss_pred hhcchhhhcCCCchhHHHHHHHHHHHHhCCCCHH---HHHHHHHhhHhHHHHHHHHHHHHHHHHhC
Q 045399 720 GALMDDVGIDLPRAPNNFGEIIGKLILAGGLDFK---VVQEILKKMEEEMYRKSVLDAALRIISCS 782 (802)
Q Consensus 720 le~LdDl~iDiP~A~~~La~~iar~I~d~~l~~~---~l~~~~~~~e~~~~~~~v~~a~l~~l~~~ 782 (802)
.+..+.|.--.+.....++.+|.- +.....+.. .|+..++.....+.....+..+++.++.+
T Consensus 326 ~~nw~~l~~~~~~~~~~~~~~i~~-~~~~~~t~~~l~e~~~Ff~~~~~~~~~~~~~~qale~i~~n 390 (419)
T 3rjo_A 326 RKNWNKLVQKFELGSSSIAHMVMG-TTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEEN 390 (419)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH-TTTTCCSHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCchhHHHHHHH-HhhcCCCHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 444444443333333345554432 234444543 34444444333221122344455555443
No 33
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.48 E-value=2.7e+02 Score=26.98 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HhhCCCCChHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHh
Q 045399 635 NLDELCRKTISLLEEYFNIRVLEEALMCV-EELKSPGYHPEVVKEAISLALEKNPPC-VDPVTKLLEYLFT 703 (802)
Q Consensus 635 s~eel~kk~~siL~EY~~~~D~~EA~~cv-kEL~~p~~~~e~V~~~I~~aLEk~~~~-re~vs~LL~~L~~ 703 (802)
|.+|+..|+..+|..=|+-.+.+--++.+ .|. .+.+.|...+|. ||...... .. ++|.+|..
T Consensus 42 st~e~~~kv~eii~~~~e~s~~~~Lv~~l~~e~---Gi~~~fs~~Ii~-ALs~tsM~~p~---~VL~~l~~ 105 (168)
T 3cz6_A 42 STRQFMDKLHEVISGDYEPSQAEKLVQDLCDET---GIRKNFSTSILT-CLSGDLMVFPR---YFLNMFKD 105 (168)
T ss_dssp SHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHH---CBCHHHHHHHHH-HTTTCGGGHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccChhhHHHHHHHHHHHh---CcccccHHHHHH-HhcCCcccCHH---HHHHHHHh
Confidence 67899999999998555555555444444 333 566777777777 77666544 22 55555554
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=21.33 E-value=79 Score=39.35 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhCCCCChH-HHHHHHHHHhhcCCCCChHHHHHHHHHHHhCCC----------cCHHHH
Q 045399 644 ISLLEEYFNIRVLEEALMCVEELKSPGYHP-EVVKEAISLALEKNPPCVDPVTKLLEYLFTQKV----------ITARDI 712 (802)
Q Consensus 644 ~siL~EY~~~~D~~EA~~cvkEL~~p~~~~-e~V~~~I~~aLEk~~~~re~vs~LL~~L~~~~l----------ls~~q~ 712 (802)
..+|+=|...|.++||...++++....+.| .+.+.+|..+|=+.....+.+.+||..+..+|+ ++.++-
T Consensus 169 NtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 455666777777777777777776555543 344666666776654445677789998888775 344444
Q ss_pred HHHHHHHhhcchhhhcC
Q 045399 713 GTGCLLFGALMDDVGID 729 (802)
Q Consensus 713 ~~Gf~~vle~LdDl~iD 729 (802)
..-+..|-..-+++..+
T Consensus 249 ~~vL~~Vrkv~P~f~p~ 265 (1134)
T 3spa_A 249 ATVLKAVHKVKPTFSLP 265 (1134)
T ss_dssp HHHHHHHGGGCCCCCCC
T ss_pred HHHHHHHHHhCcccCCC
Confidence 44455555555555554
No 35
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=21.26 E-value=1.5e+02 Score=26.75 Aligned_cols=91 Identities=9% Similarity=-0.094 Sum_probs=49.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh--CCCcCHHHHHHHHHHHhhc
Q 045399 645 SLLEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFT--QKVITARDIGTGCLLFGAL 722 (802)
Q Consensus 645 siL~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~~~~re~vs~LL~~L~~--~~lls~~q~~~Gf~~vle~ 722 (802)
.-++.||.+.|+.. |...|..+|..+++.....-+....-|...+. .--|++++|..=.+.++..
T Consensus 35 P~~k~~F~~~d~~~-------------q~~~l~~~l~~~v~~~~~~l~~~l~~L~~~H~~~~~gV~p~~f~~~~~~Ll~~ 101 (134)
T 1tu9_A 35 PQIRAKFATTDMTA-------------QKHLLRAGIMNLVMYARGMSDSKLRALGASHSRAALDIRPELYDLWLDALLMA 101 (134)
T ss_dssp HHHHHHTTTCCHHH-------------HHHHHHHHHHHHHHHHTTCCTHHHHHHHHHTSTTTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHH-------------HHHHHHHHHHHHHHcCcHhHHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHH
Confidence 45777887655332 44455555555555311112233333344444 2238888888777777777
Q ss_pred chhhhcCCC----chhHHHHHHHHHHHHhC
Q 045399 723 MDDVGIDLP----RAPNNFGEIIGKLILAG 748 (802)
Q Consensus 723 LdDl~iDiP----~A~~~La~~iar~I~d~ 748 (802)
|.++.-+.. .||.-+-..++.++..+
T Consensus 102 l~~lg~~~t~e~~~AW~~~~~~~a~~l~~~ 131 (134)
T 1tu9_A 102 VAEHDRDCDAETRDAWRDVMGRGIAVIKSY 131 (134)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777332222 46666666666555543
No 36
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.87 E-value=7e+02 Score=29.69 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhcCC--CHHHHHHHHHhhCC--C----------CChHHHHHHHHHH-------hhcCCC-CChHHH
Q 045399 637 DELCRKTISLLEEYFNIR--VLEEALMCVEELKS--P----------GYHPEVVKEAISL-------ALEKNP-PCVDPV 694 (802)
Q Consensus 637 eel~kk~~siL~EY~~~~--D~~EA~~cvkEL~~--p----------~~~~e~V~~~I~~-------aLEk~~-~~re~v 694 (802)
+.+.+-+..+.+++-..+ -++-.+.|+.+++. | ...++|...+|.. +|++.+ .....+
T Consensus 29 ~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv~~l~~~f~~~l~~~~~~~~k~~ 108 (771)
T 1h2v_C 29 SNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYL 108 (771)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHccChHHHHHH
Confidence 455555555443332222 24566777777642 1 1224444444433 444444 344577
Q ss_pred HHHHHHHHhCCCcCHHHHHHHHHHHhhcchhhhcCCCch
Q 045399 695 TKLLEYLFTQKVITARDIGTGCLLFGALMDDVGIDLPRA 733 (802)
Q Consensus 695 s~LL~~L~~~~lls~~q~~~Gf~~vle~LdDl~iDiP~A 733 (802)
.++|.+|+..++++..-+.+=|..+++.+.|. ++|.+
T Consensus 109 lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~e~--~~~q~ 145 (771)
T 1h2v_C 109 VRFLSDLVNCHVIAAPSMVAMFENFVSVTQEE--DVPQV 145 (771)
T ss_dssp HHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCS--SCCHH
T ss_pred HHHHHHhccCCeecHHHHHHHHHHHHHhhhhc--CCccc
Confidence 89999999999999999999999999988764 66754
No 37
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=20.44 E-value=4.3e+02 Score=27.38 Aligned_cols=107 Identities=13% Similarity=0.026 Sum_probs=69.5
Q ss_pred HHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhC--CCcCHHHHHHHHHHHhhcch
Q 045399 647 LEEYFNIRVLEEALMCVEELKSPGYHPEVVKEAISLALEKNPPCVDPVTKLLEYLFTQ--KVITARDIGTGCLLFGALMD 724 (802)
Q Consensus 647 L~EY~~~~D~~EA~~cvkEL~~p~~~~e~V~~~I~~aLEk~~~~re~vs~LL~~L~~~--~lls~~q~~~Gf~~vle~Ld 724 (802)
|.||+-+-+++||+..++.-+ +.+..++...=|+.+..+..+...|..+.+. +.+....+...|..+++.+-
T Consensus 12 lre~L~sWkiK~a~ela~~~e------~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk 85 (265)
T 3b2a_A 12 LRELVLSWQILDAVSLALEDK------RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS 85 (265)
T ss_dssp HHHHHHTTCHHHHHHHHHHCH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhHHHHHHHHHhch------hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 568888889999987776642 3444555554455556677777888888886 88999999999999886663
Q ss_pred hhhcCCCchhHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 045399 725 DVGIDLPRAPNNFGEIIGKLILAGGLDFKVVQEILKKM 762 (802)
Q Consensus 725 Dl~iDiP~A~~~La~~iar~I~d~~l~~~~l~~~~~~~ 762 (802)
+-. -++.-+-.+.+...+...-++.+-+..+.+-+
T Consensus 86 ~~d---Ekval~A~r~L~~LLe~vpL~~~~y~Kl~~aL 120 (265)
T 3b2a_A 86 QEN---EKVTIKALRALGYLVKDVPMGSKTFLKAAKTL 120 (265)
T ss_dssp STT---HHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred ccc---hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 211 23333344555566666666665554444443
Done!