BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045400
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 15 PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV 74
P+ KG W+ EEDQR+ +V ++G WS + + R GK CR RW N+L P +K+
Sbjct: 23 PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTS 81
Query: 75 FNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
+ +E+ I H+ LGN+W++IA+ LPGRTDN +KN+W+S
Sbjct: 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 53 RNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKN 111
R C+ RW L P L +G + +E++ ++ + G K WS IA+HL GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 112 YWHSH 116
WH+H
Sbjct: 68 RWHNH 72
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 15 PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV 74
P+ KG W+ EEDQR+ V ++G WS + + R GK CR RW N+L P +K+
Sbjct: 54 PELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTS 112
Query: 75 FNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
+ +E+ I H+ LGN+W++IA+ LPGRTDN IKN+W+S
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 153
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
K W+ EED++LK V Q+G W + N R C+ RW L P L +G + +
Sbjct: 6 KTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64
Query: 79 EEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYWHSH 116
E++ ++ L + G K WS IA+HL GR + + WH+H
Sbjct: 65 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 15 PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV 74
P KG W+ EEDQ++ V ++G W+ + + R GK CR RW N+L P +K+
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSS 61
Query: 75 FNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
+ +E+ I H++LGN+W++IA+ LPGRTDN +KN+W+S
Sbjct: 62 WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNS 102
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 68 PGLKRGVFNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYWHSH 116
P L +G + +E++ ++ L + G K W+ IA+HL GR + + WH+H
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNH 52
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
KG W+ EEDQR+ V ++G WS + + R GK CR RW N+L P +K+ + +
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 79 EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
E+ I H+ LGN+W++IA+ LPGRTDN IKN+W+S
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 70 LKRGVFNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYWHSH 116
L +G + +E++ ++ L + G K WS IA+HL GR + + WH+H
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
KG W+ EEDQR+ V ++G WS + + R GK CR RW N+L P +K+ + +
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 79 EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
E+ I H+ LGN+W++IA+ LPGRTDN IKN+W+S
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 70 LKRGVFNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYWHSH 116
L +G + +E++ ++ L + G K WS IA+HL GR + + WH+H
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQ 78
KG ++ ED ++ YV ++G W + + R+ K CR RW N+L P + + + +
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRI-TSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 79 EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
E+ETI + LG+KWS IA+ +PGRTDN IKN W+S
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNM 77
+K ++PEED+ LK V QHG W + RN + CR RW NYL P + +
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 78 QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYW 113
+E+ ++ + G +W+ IA+ PGRTD IKN W
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 23 SPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEET 82
+ EED +L+ V+++G W + + RN + CR RW NY+ P L+ ++ +E+
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 83 ILTLHRLLGNKWSQIAQHLPGRTDNEIKNYW 113
+ + G KW++I++ L R+DN I+N W
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 70 LKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
+K+ + +E+ I H+ LGN+W++IA+ LPGRTDN IKN+W+S
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 46
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 52.4 bits (124), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 70 LKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115
+K+ + +E+ + H+ LGN+W++IA+ LPGRTDN IKN+W+S
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 48
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
KG W+ EEDQRL V ++G WS + + R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 35.8 bits (81), Expect = 0.030, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 70 LKRGVFNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYWHSH 116
L +G + +E++ ++ L + G K WS IA+HL GR + + WH+H
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
KG W+ EEDQR+ V ++G WS + + R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 36.2 bits (82), Expect = 0.022, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 70 LKRGVFNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYWHSH 116
L +G + +E++ ++ L + G K WS IA+HL GR + + WH+H
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
KG W+ EEDQR+ V ++G WS + + R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 36.2 bits (82), Expect = 0.023, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 70 LKRGVFNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYWHSH 116
L +G + +E++ ++ L + G K WS IA+HL GR + + WH+H
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 35.0 bits (79), Expect = 0.052, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 21 LWSPEEDQRLKNYVLQHGHPCWSSVPINAGL--QRNGKSCRLRWINYLRPGLKR 72
+W ED+ LK V+++G WS + A L +++ K C+ RW +L P +K+
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARWYEWLDPSIKK 61
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
K W+ EED++LK V Q+G W + N R C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68
K W+ EED++LK V Q+G W + N R C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNP 51
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 75 FNMQEEETILTLHRLLGNK-WSQIAQHLPGRTDNEIKNYW 113
+ +E+E + L R G + W +A H P RTD + + W
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,548,364
Number of Sequences: 62578
Number of extensions: 311568
Number of successful extensions: 553
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 36
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)