Query 045400
Match_columns 313
No_of_seqs 234 out of 1435
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 4.6E-34 1.6E-38 230.5 9.2 105 16-121 1-105 (105)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 4.2E-34 1.4E-38 238.7 8.4 117 4-121 11-128 (128)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1E-33 3.4E-38 229.7 7.6 102 19-121 1-102 (107)
4 3osg_A MYB21; transcription-DN 100.0 4.9E-33 1.7E-37 231.9 9.5 105 13-119 5-109 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 5.3E-33 1.8E-37 233.1 9.2 104 19-123 2-105 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.1E-31 3.9E-36 231.5 5.8 109 12-121 51-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.3E-29 4.5E-34 218.6 5.6 104 16-120 3-107 (159)
8 2dim_A Cell division cycle 5-l 99.9 1.1E-22 3.9E-27 152.7 2.9 66 14-80 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 2.1E-20 7.1E-25 155.6 4.9 74 45-119 1-75 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 8.1E-19 2.8E-23 159.1 7.0 106 14-120 3-200 (246)
11 2juh_A Telomere binding protei 99.7 1.2E-18 4.3E-23 143.8 4.2 85 11-96 9-103 (121)
12 2d9a_A B-MYB, MYB-related prot 99.7 3.5E-18 1.2E-22 124.4 3.6 57 14-71 3-59 (60)
13 1gvd_A MYB proto-oncogene prot 99.7 6.4E-18 2.2E-22 119.6 3.4 52 17-69 1-52 (52)
14 2llk_A Cyclin-D-binding MYB-li 99.7 7.7E-18 2.6E-22 127.6 4.0 58 59-117 10-67 (73)
15 1ity_A TRF1; helix-turn-helix, 99.7 6.9E-18 2.4E-22 126.2 3.2 65 12-76 3-68 (69)
16 2roh_A RTBP1, telomere binding 99.7 1.9E-17 6.4E-22 136.9 5.8 80 13-93 25-114 (122)
17 1guu_A C-MYB, MYB proto-oncoge 99.7 1.1E-17 3.9E-22 118.2 2.5 52 17-69 1-52 (52)
18 2din_A Cell division cycle 5-l 99.6 1.1E-16 3.6E-21 118.7 5.3 58 65-123 2-59 (66)
19 2cu7_A KIAA1915 protein; nucle 99.6 1.1E-16 3.9E-21 120.6 3.2 58 66-123 3-60 (72)
20 3sjm_A Telomeric repeat-bindin 99.6 7.8E-17 2.7E-21 119.1 2.2 57 15-71 7-64 (64)
21 1x41_A Transcriptional adaptor 99.6 1.2E-16 4.2E-21 116.4 2.8 55 14-69 3-57 (60)
22 2din_A Cell division cycle 5-l 99.6 1.3E-16 4.4E-21 118.2 0.6 60 12-74 2-61 (66)
23 2d9a_A B-MYB, MYB-related prot 99.6 9.5E-16 3.2E-20 111.4 4.8 55 67-121 3-58 (60)
24 1guu_A C-MYB, MYB proto-oncoge 99.6 1.4E-15 4.8E-20 107.3 5.1 50 70-119 1-51 (52)
25 1gvd_A MYB proto-oncogene prot 99.6 2.5E-15 8.5E-20 106.1 5.1 50 70-119 1-51 (52)
26 2yum_A ZZZ3 protein, zinc fing 99.6 4.6E-16 1.6E-20 118.0 1.3 60 14-74 3-67 (75)
27 1w0t_A Telomeric repeat bindin 99.6 8.9E-16 3.1E-20 109.0 2.2 50 18-67 1-51 (53)
28 2elk_A SPCC24B10.08C protein; 99.5 1.4E-15 4.7E-20 110.2 2.7 51 16-66 6-56 (58)
29 1w0t_A Telomeric repeat bindin 99.5 7.7E-15 2.6E-19 104.1 5.2 49 71-119 1-52 (53)
30 1x41_A Transcriptional adaptor 99.5 7.4E-15 2.5E-19 106.9 5.1 52 67-118 3-55 (60)
31 2dim_A Cell division cycle 5-l 99.5 4.1E-15 1.4E-19 111.4 3.1 57 67-123 4-61 (70)
32 1ity_A TRF1; helix-turn-helix, 99.5 7.7E-15 2.6E-19 109.6 4.6 57 66-122 4-63 (69)
33 2cu7_A KIAA1915 protein; nucle 99.5 1.6E-15 5.5E-20 114.3 0.7 58 13-72 3-60 (72)
34 3sjm_A Telomeric repeat-bindin 99.5 2.4E-14 8.1E-19 105.7 4.7 51 70-120 9-62 (64)
35 2yum_A ZZZ3 protein, zinc fing 99.5 1.1E-14 3.9E-19 110.3 2.9 56 67-122 3-64 (75)
36 2elk_A SPCC24B10.08C protein; 99.5 4.7E-14 1.6E-18 102.0 5.2 50 68-117 5-56 (58)
37 2aje_A Telomere repeat-binding 99.5 3.5E-14 1.2E-18 114.5 4.8 80 12-91 6-94 (105)
38 2yus_A SWI/SNF-related matrix- 99.4 3.8E-14 1.3E-18 108.9 4.2 58 6-65 5-62 (79)
39 2ltp_A Nuclear receptor corepr 99.2 9E-15 3.1E-19 114.7 0.0 56 65-120 9-64 (89)
40 3zqc_A MYB3; transcription-DNA 99.4 8.8E-15 3E-19 122.1 -0.1 84 12-101 47-130 (131)
41 2ckx_A NGTRF1, telomere bindin 99.4 9E-14 3.1E-18 107.7 4.5 69 20-89 1-79 (83)
42 2llk_A Cyclin-D-binding MYB-li 99.4 5.2E-14 1.8E-18 106.5 2.7 56 11-70 15-70 (73)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.4E-13 4.7E-18 104.2 2.0 55 12-67 11-68 (73)
44 2cqr_A RSGI RUH-043, DNAJ homo 99.3 7.7E-13 2.6E-17 100.1 5.2 51 68-118 14-68 (73)
45 1gv2_A C-MYB, MYB proto-oncoge 99.3 1.7E-13 5.9E-18 109.8 0.3 56 12-69 49-104 (105)
46 2ltp_A Nuclear receptor corepr 99.0 1.6E-13 5.5E-18 107.6 0.0 55 12-68 9-63 (89)
47 2yus_A SWI/SNF-related matrix- 99.3 1.4E-12 4.9E-17 100.1 3.6 48 69-116 15-62 (79)
48 1x58_A Hypothetical protein 49 99.3 5.2E-12 1.8E-16 92.1 5.6 49 71-119 7-58 (62)
49 3osg_A MYB21; transcription-DN 99.3 4E-12 1.4E-16 105.3 5.7 55 67-121 6-60 (126)
50 2k9n_A MYB24; R2R3 domain, DNA 99.2 1.1E-12 3.8E-17 105.7 0.9 54 13-68 47-100 (107)
51 2ckx_A NGTRF1, telomere bindin 99.2 1.3E-11 4.6E-16 95.5 5.9 48 73-120 1-53 (83)
52 2aje_A Telomere repeat-binding 99.2 2.1E-11 7.3E-16 98.2 6.5 52 68-119 9-65 (105)
53 2juh_A Telomere binding protei 99.2 1.9E-11 6.4E-16 100.8 5.5 54 66-119 11-69 (121)
54 1ign_A Protein (RAP1); RAP1,ye 99.2 9.8E-12 3.4E-16 112.8 3.3 55 68-122 4-64 (246)
55 2cjj_A Radialis; plant develop 99.1 5.5E-11 1.9E-15 93.9 6.0 50 71-120 7-60 (93)
56 2cjj_A Radialis; plant develop 99.1 1.4E-11 4.9E-16 97.3 1.2 48 18-66 7-57 (93)
57 2roh_A RTBP1, telomere binding 99.1 1E-10 3.4E-15 96.6 5.9 53 68-120 27-84 (122)
58 2eqr_A N-COR1, N-COR, nuclear 98.9 7.1E-10 2.4E-14 80.7 4.9 47 71-117 11-57 (61)
59 2eqr_A N-COR1, N-COR, nuclear 98.9 3.2E-10 1.1E-14 82.6 2.8 52 14-67 7-58 (61)
60 3hm5_A DNA methyltransferase 1 98.9 1.2E-09 4.1E-14 86.1 6.3 64 56-123 18-86 (93)
61 1x58_A Hypothetical protein 49 98.8 1.8E-09 6E-14 78.8 2.7 49 17-67 6-57 (62)
62 2xag_B REST corepressor 1; ami 98.8 2.6E-09 8.9E-14 106.0 4.7 47 73-119 381-427 (482)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.8 5.8E-09 2E-13 78.5 4.8 49 69-118 5-57 (72)
64 2iw5_B Protein corest, REST co 98.7 8.3E-09 2.8E-13 92.9 5.8 49 71-119 132-180 (235)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.7 4E-09 1.4E-13 79.4 1.5 51 15-67 4-57 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.6 1.6E-08 5.4E-13 76.3 1.7 49 19-68 8-59 (73)
67 1wgx_A KIAA1903 protein; MYB D 98.5 1.1E-07 3.8E-12 71.6 4.6 47 71-117 7-57 (73)
68 2iw5_B Protein corest, REST co 98.5 5.3E-08 1.8E-12 87.7 2.5 50 16-67 130-179 (235)
69 1fex_A TRF2-interacting telome 98.4 4.2E-08 1.4E-12 71.0 1.4 48 19-67 2-58 (59)
70 4eef_G F-HB80.4, designed hema 98.3 1.2E-07 4.2E-12 71.1 1.5 45 18-63 19-66 (74)
71 1fex_A TRF2-interacting telome 98.3 4.8E-07 1.6E-11 65.4 4.2 47 72-118 2-58 (59)
72 2yqk_A Arginine-glutamic acid 98.2 1.7E-06 5.8E-11 63.2 5.8 49 67-115 4-53 (63)
73 1ofc_X ISWI protein; nuclear p 98.2 5.7E-06 1.9E-10 77.9 9.7 103 20-123 111-279 (304)
74 2yqk_A Arginine-glutamic acid 98.1 1.4E-06 4.8E-11 63.6 3.0 50 14-65 4-54 (63)
75 4eef_G F-HB80.4, designed hema 98.1 8.6E-07 2.9E-11 66.5 1.4 43 72-114 20-66 (74)
76 1ug2_A 2610100B20RIK gene prod 98.0 3.7E-06 1.3E-10 65.4 4.6 48 73-120 34-84 (95)
77 2lr8_A CAsp8-associated protei 97.2 8.7E-07 3E-11 65.4 0.0 45 74-119 16-63 (70)
78 4iej_A DNA methyltransferase 1 97.9 2.5E-05 8.4E-10 61.3 6.4 60 60-123 22-86 (93)
79 2crg_A Metastasis associated p 97.7 4.7E-05 1.6E-09 56.7 5.5 45 71-115 7-52 (70)
80 4a69_C Nuclear receptor corepr 97.7 4.2E-05 1.4E-09 60.2 4.7 44 72-115 43-86 (94)
81 2xag_B REST corepressor 1; ami 97.7 1.5E-05 5.1E-10 79.2 2.5 48 17-66 378-425 (482)
82 2crg_A Metastasis associated p 97.6 3.6E-05 1.2E-09 57.3 2.9 46 18-65 7-53 (70)
83 3hm5_A DNA methyltransferase 1 97.5 2.8E-05 9.5E-10 61.1 1.9 49 18-67 29-81 (93)
84 4a69_C Nuclear receptor corepr 97.5 3.6E-05 1.2E-09 60.5 2.4 45 19-65 43-87 (94)
85 1ug2_A 2610100B20RIK gene prod 97.4 0.00018 6.2E-09 55.9 4.9 57 7-64 21-79 (95)
86 4b4c_A Chromodomain-helicase-D 97.4 0.00076 2.6E-08 59.5 9.6 104 15-119 3-196 (211)
87 2ebi_A DNA binding protein GT- 97.0 6.9E-05 2.4E-09 57.5 -1.2 50 17-66 2-63 (86)
88 2ebi_A DNA binding protein GT- 96.8 0.00061 2.1E-08 52.1 2.9 49 72-120 4-66 (86)
89 2lr8_A CAsp8-associated protei 95.8 0.00023 7.9E-09 52.5 0.0 50 16-67 11-62 (70)
90 2y9y_A Imitation switch protei 96.1 0.012 4E-07 56.8 7.7 101 20-120 124-292 (374)
91 1irz_A ARR10-B; helix-turn-hel 95.9 0.017 5.7E-07 42.2 5.8 49 70-118 5-58 (64)
92 4iej_A DNA methyltransferase 1 95.4 0.0057 1.9E-07 47.8 2.0 49 18-67 29-81 (93)
93 1ofc_X ISWI protein; nuclear p 92.9 0.16 5.4E-06 47.7 6.3 47 73-119 111-158 (304)
94 1irz_A ARR10-B; helix-turn-hel 90.9 0.12 4E-06 37.6 2.3 50 16-65 4-56 (64)
95 4b4c_A Chromodomain-helicase-D 90.6 0.25 8.5E-06 43.1 4.6 52 69-120 4-60 (211)
96 2xb0_X Chromo domain-containin 88.3 0.19 6.6E-06 46.3 2.2 28 20-47 169-196 (270)
97 2xb0_X Chromo domain-containin 75.0 8.5 0.00029 35.3 7.8 49 72-120 3-56 (270)
98 3cz6_A DNA-binding protein RAP 72.2 2 6.9E-05 36.6 2.6 30 14-46 109-146 (168)
99 2jvw_A Uncharacterized protein 63.5 1.8 6.1E-05 33.0 0.5 46 27-85 18-70 (88)
100 2o8x_A Probable RNA polymerase 61.2 7.3 0.00025 26.7 3.4 41 78-119 18-58 (70)
101 2rq5_A Protein jumonji; develo 59.4 3.2 0.00011 33.6 1.3 47 40-89 64-114 (121)
102 1ku3_A Sigma factor SIGA; heli 57.9 9 0.00031 27.0 3.4 41 78-119 13-57 (73)
103 2y9y_A Imitation switch protei 54.7 18 0.00061 34.7 5.8 46 73-118 124-171 (374)
104 2p7v_B Sigma-70, RNA polymeras 52.5 8.9 0.0003 26.6 2.6 41 78-119 8-52 (68)
105 2li6_A SWI/SNF chromatin-remod 51.0 9.3 0.00032 30.3 2.7 38 83-120 54-99 (116)
106 3hug_A RNA polymerase sigma fa 49.2 23 0.0008 25.9 4.7 41 78-119 40-80 (92)
107 2lm1_A Lysine-specific demethy 48.4 23 0.0008 27.3 4.7 37 83-119 49-97 (107)
108 2jrz_A Histone demethylase jar 47.2 20 0.0007 28.3 4.2 39 82-120 44-94 (117)
109 2li6_A SWI/SNF chromatin-remod 45.8 4.1 0.00014 32.4 -0.2 39 29-68 53-98 (116)
110 2eqy_A RBP2 like, jumonji, at 45.4 42 0.0015 26.6 5.9 38 83-120 47-96 (122)
111 2q1z_A RPOE, ECF SIGE; ECF sig 42.3 32 0.0011 27.8 4.9 35 84-119 144-178 (184)
112 2cxy_A BAF250B subunit, HBAF25 41.5 29 0.00098 27.7 4.3 40 82-121 55-106 (125)
113 1c20_A DEAD ringer protein; DN 41.1 30 0.001 27.7 4.4 39 82-120 56-107 (128)
114 1kkx_A Transcription regulator 40.6 15 0.00052 29.5 2.5 38 83-120 53-98 (123)
115 1ig6_A MRF-2, modulator recogn 39.9 6.9 0.00024 30.4 0.3 41 29-69 37-88 (107)
116 2jrz_A Histone demethylase jar 39.6 5.7 0.00019 31.6 -0.2 40 29-68 44-93 (117)
117 1x3u_A Transcriptional regulat 39.6 33 0.0011 23.9 4.0 42 75-119 17-58 (79)
118 2jpc_A SSRB; DNA binding prote 38.9 43 0.0015 22.1 4.3 38 80-119 3-40 (61)
119 3cz6_A DNA-binding protein RAP 37.2 25 0.00085 29.9 3.3 28 57-84 98-126 (168)
120 3c57_A Two component transcrip 36.9 34 0.0012 25.4 3.9 43 74-119 27-69 (95)
121 1tty_A Sigma-A, RNA polymerase 36.4 30 0.001 25.2 3.4 41 78-119 21-65 (87)
122 3ulq_B Transcriptional regulat 35.9 46 0.0016 24.7 4.4 45 72-119 27-71 (90)
123 2rq5_A Protein jumonji; develo 35.5 33 0.0011 27.4 3.8 77 17-119 5-96 (121)
124 2kk0_A AT-rich interactive dom 35.2 35 0.0012 28.0 3.9 39 82-120 68-119 (145)
125 1or7_A Sigma-24, RNA polymeras 35.0 47 0.0016 26.9 4.8 31 88-119 153-183 (194)
126 1fse_A GERE; helix-turn-helix 34.5 34 0.0012 23.4 3.3 44 73-119 10-53 (74)
127 3i4p_A Transcriptional regulat 33.8 24 0.00081 28.9 2.7 43 78-121 3-46 (162)
128 2kk0_A AT-rich interactive dom 33.6 12 0.0004 30.9 0.8 58 29-86 68-138 (145)
129 1c20_A DEAD ringer protein; DN 33.0 8.3 0.00028 31.1 -0.3 40 29-68 56-106 (128)
130 1je8_A Nitrate/nitrite respons 33.0 36 0.0012 24.6 3.3 43 74-119 21-63 (82)
131 1xsv_A Hypothetical UPF0122 pr 32.1 48 0.0016 25.6 4.2 41 78-119 28-68 (113)
132 2rnj_A Response regulator prot 31.2 42 0.0014 24.5 3.5 43 74-119 29-71 (91)
133 2jxj_A Histone demethylase jar 30.7 21 0.00072 27.0 1.7 37 83-119 41-89 (96)
134 2p1m_A SKP1-like protein 1A; F 30.4 18 0.00063 29.9 1.5 35 43-85 119-153 (160)
135 3mzy_A RNA polymerase sigma-H 28.9 64 0.0022 25.0 4.5 30 89-119 122-151 (164)
136 1tc3_C Protein (TC3 transposas 28.7 81 0.0028 19.0 4.2 38 74-113 5-42 (51)
137 2dbb_A Putative HTH-type trans 28.6 72 0.0025 25.2 4.8 43 78-121 9-52 (151)
138 2yqf_A Ankyrin-1; death domain 28.2 59 0.002 25.1 4.1 35 76-111 14-48 (111)
139 1u78_A TC3 transposase, transp 28.2 1.9E+02 0.0064 21.9 7.2 87 20-113 5-100 (141)
140 1rp3_A RNA polymerase sigma fa 26.5 83 0.0028 26.1 5.1 40 79-119 191-230 (239)
141 2o71_A Death domain-containing 25.8 52 0.0018 25.9 3.3 29 82-111 26-54 (115)
142 1ntc_A Protein (nitrogen regul 25.7 86 0.0029 23.1 4.4 36 77-113 50-85 (91)
143 1p4w_A RCSB; solution structur 25.2 1.2E+02 0.004 22.9 5.2 45 72-119 32-76 (99)
144 3e7l_A Transcriptional regulat 25.2 67 0.0023 21.9 3.5 36 77-113 18-53 (63)
145 2e1c_A Putative HTH-type trans 24.8 62 0.0021 26.8 3.8 43 77-120 26-69 (171)
146 2of5_A Death domain-containing 24.7 49 0.0017 26.0 3.0 39 69-111 16-54 (114)
147 1s7o_A Hypothetical UPF0122 pr 24.3 78 0.0027 24.5 4.1 40 78-118 25-64 (113)
148 2k27_A Paired box protein PAX- 23.5 2.2E+02 0.0074 22.5 6.9 67 20-91 24-100 (159)
149 2hzd_A Transcriptional enhance 23.3 69 0.0024 24.0 3.4 28 18-45 5-32 (82)
150 1wxp_A THO complex subunit 1; 22.6 86 0.003 24.1 4.0 31 80-111 18-48 (110)
151 3i4p_A Transcriptional regulat 22.5 20 0.00067 29.4 0.2 43 25-69 3-45 (162)
152 2cyy_A Putative HTH-type trans 22.4 86 0.0029 24.9 4.1 43 78-121 7-50 (151)
153 2of5_H Leucine-rich repeat and 22.3 54 0.0018 25.7 2.8 31 80-111 13-43 (118)
154 1k78_A Paired box protein PAX5 21.8 1.6E+02 0.0056 22.9 5.7 100 17-120 28-146 (149)
155 2xsa_A Ogoga, hyaluronoglucosa 21.1 2E+02 0.0068 28.1 7.0 59 18-91 10-68 (447)
156 3k6g_A Telomeric repeat-bindin 20.9 47 0.0016 26.1 2.0 63 27-92 14-86 (111)
157 4ayb_F DNA-directed RNA polyme 20.2 68 0.0023 25.2 2.9 65 20-91 45-111 (113)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=4.6e-34 Score=230.46 Aligned_cols=105 Identities=43% Similarity=0.795 Sum_probs=99.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchh
Q 045400 16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWS 95 (313)
Q Consensus 16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~ 95 (313)
.+++|+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 36899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400 96 QIAQHLPGRTDNEIKNYWHSHLKKKL 121 (313)
Q Consensus 96 ~Ia~~l~gRT~~q~knrw~~llkk~l 121 (313)
.||++|||||+.+|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999988753
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=4.2e-34 Score=238.68 Aligned_cols=117 Identities=38% Similarity=0.724 Sum_probs=103.1
Q ss_pred CCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHH
Q 045400 4 KSSEKPIA-KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEET 82 (313)
Q Consensus 4 ~~~~k~~~-~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~ 82 (313)
++|..++. ..+|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||++
T Consensus 11 ~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~ 89 (128)
T 1h8a_C 11 VQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 89 (128)
T ss_dssp -----------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHH
Confidence 34555544 478999999999999999999999999888999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400 83 ILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121 (313)
Q Consensus 83 Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~l 121 (313)
|++++.+||.+|+.||++|||||+.+|++||+.++++++
T Consensus 90 L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 90 IYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999988753
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1e-33 Score=229.70 Aligned_cols=102 Identities=29% Similarity=0.564 Sum_probs=98.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchhhhc
Q 045400 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIA 98 (313)
Q Consensus 19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia 98 (313)
||+||+|||++|+++|.+||..+|..||..|| +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHH
Q 045400 99 QHLPGRTDNEIKNYWHSHLKKKL 121 (313)
Q Consensus 99 ~~l~gRT~~q~knrw~~llkk~l 121 (313)
++|||||+.+|++||..++++..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHhhHH
Confidence 99999999999999999888754
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=4.9e-33 Score=231.94 Aligned_cols=105 Identities=35% Similarity=0.655 Sum_probs=100.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCC
Q 045400 13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGN 92 (313)
Q Consensus 13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~ 92 (313)
.++..+||+||+|||++|+++|.+||. +|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 367899999999999999999999996 8999999999 99999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 93 KWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 93 ~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+|+.||+.|||||+.+|++||..++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988775
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=5.3e-33 Score=233.09 Aligned_cols=104 Identities=38% Similarity=0.728 Sum_probs=100.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchhhhc
Q 045400 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIA 98 (313)
Q Consensus 19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia 98 (313)
||+||+|||++|+++|.+||..+|..||..|| +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999989999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400 99 QHLPGRTDNEIKNYWHSHLKKKLAK 123 (313)
Q Consensus 99 ~~l~gRT~~q~knrw~~llkk~l~~ 123 (313)
++|||||+.+|++||+.++++.+..
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999887643
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.1e-31 Score=231.54 Aligned_cols=109 Identities=42% Similarity=0.779 Sum_probs=103.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhC
Q 045400 12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLG 91 (313)
Q Consensus 12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G 91 (313)
...|.+++|+||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||++|++++.+||
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 468999999999999999999999999888999999998 9999999999999999999999999999999999999999
Q ss_pred CchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400 92 NKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121 (313)
Q Consensus 92 ~~W~~Ia~~l~gRT~~q~knrw~~llkk~l 121 (313)
.+|+.||++|||||+++|++||+.++++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999988753
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=1.3e-29 Score=218.63 Aligned_cols=104 Identities=33% Similarity=0.682 Sum_probs=61.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCC-ch
Q 045400 16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGN-KW 94 (313)
Q Consensus 16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~-~W 94 (313)
.+++|+||+|||++|+++|.+||..+|..||..|| +|+++||++||.++|+|.+++++||+|||++|+++|.+||. .|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 46789999999999999999999889999999999 99999999999999999999999999999999999999996 69
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400 95 SQIAQHLPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 95 ~~Ia~~l~gRT~~q~knrw~~llkk~ 120 (313)
..||+.|||||+.||++||..+|.+.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 99999999999999999999987643
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-22 Score=152.71 Aligned_cols=66 Identities=26% Similarity=0.600 Sum_probs=64.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHH
Q 045400 14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEE 80 (313)
Q Consensus 14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED 80 (313)
.|.+++|+||+|||++|+++|.+||..+|..||..|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5789999999999999999999999889999999999 99999999999999999999999999998
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.80 E-value=2.1e-20 Score=155.63 Aligned_cols=74 Identities=30% Similarity=0.693 Sum_probs=50.7
Q ss_pred cccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCC-chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 45 VPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGN-KWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 45 IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
||+.|+ +||++||++||.++|+|.+++++||+|||++|+++|.+||. .|..||..|||||+.||++||..+|.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence 788888 99999999999999999999999999999999999999995 699999999999999999999998764
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.75 E-value=8.1e-19 Score=159.12 Aligned_cols=106 Identities=21% Similarity=0.332 Sum_probs=92.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCC-----CcccccccCCcCCccccchhhhhccCCCcc-----------------
Q 045400 14 KPKHRKGLWSPEEDQRLKNYVLQHGHPC-----WSSVPINAGLQRNGKSCRLRWINYLRPGLK----------------- 71 (313)
Q Consensus 14 kp~~kkg~WT~EED~~L~~~V~kyg~~~-----W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lk----------------- 71 (313)
.+.+.|++||+|||++|+++|.+||..+ |..||..|+ |||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3578899999999999999999998643 999999999 99999999999999999986
Q ss_pred ------------CcccCHHHHHHHHHHHHH-h------------------------------------------------
Q 045400 72 ------------RGVFNMQEEETILTLHRL-L------------------------------------------------ 90 (313)
Q Consensus 72 ------------k~~WT~EED~~Ll~lv~~-~------------------------------------------------ 90 (313)
+..||.|||-.|+..+++ +
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999999987 2
Q ss_pred -----CC----chhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400 91 -----GN----KWSQIAQHLPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 91 -----G~----~W~~Ia~~l~gRT~~q~knrw~~llkk~ 120 (313)
|. .|..||+.+|+||...+|+||+.+++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999988765
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.73 E-value=1.2e-18 Score=143.77 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=79.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCccccccc----CCcCCccccchhhhhccC-----CCccCc-ccCHHHH
Q 045400 11 AKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINA----GLQRNGKSCRLRWINYLR-----PGLKRG-VFNMQEE 80 (313)
Q Consensus 11 ~~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l----~~~Rt~~QCr~Rw~~~L~-----p~lkk~-~WT~EED 80 (313)
....+++++++||+|||+.|+++|.+||.+.|..|+..+ + +||+.||++||+++|+ |.++++ +|++||+
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~ 87 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLL 87 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHH
Confidence 346789999999999999999999999988999999985 5 9999999999999998 999999 9999999
Q ss_pred HHHHHHHHHhCCchhh
Q 045400 81 ETILTLHRLLGNKWSQ 96 (313)
Q Consensus 81 ~~Ll~lv~~~G~~W~~ 96 (313)
.+|+.++..+|++|+.
T Consensus 88 ~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 88 DRVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccchhc
Confidence 9999999999999976
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=3.5e-18 Score=124.39 Aligned_cols=57 Identities=26% Similarity=0.520 Sum_probs=54.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCcc
Q 045400 14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLK 71 (313)
Q Consensus 14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lk 71 (313)
.|.+++++||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999878999999999 99999999999999999875
No 13
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=6.4e-18 Score=119.56 Aligned_cols=52 Identities=44% Similarity=0.727 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400 17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG 69 (313)
Q Consensus 17 ~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~ 69 (313)
+++|+||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999878999999998 999999999999999984
No 14
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-18 Score=127.62 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=47.3
Q ss_pred chhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHH
Q 045400 59 RLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHL 117 (313)
Q Consensus 59 r~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~ll 117 (313)
--||.++|+|.+++++||+|||++|+++|.+||.+|+.||+.| |||+.+||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 999999999998753
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.69 E-value=6.9e-18 Score=126.24 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCC-cCCccccchhhhhccCCCccCcccC
Q 045400 12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGL-QRNGKSCRLRWINYLRPGLKRGVFN 76 (313)
Q Consensus 12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~-~Rt~~QCr~Rw~~~L~p~lkk~~WT 76 (313)
++++..++++||+|||++|+++|.+||..+|..||..|+. +||+.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5678999999999999999999999998899999999976 8999999999999999999988764
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.69 E-value=1.9e-17 Score=136.94 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=74.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCCccccccc----CCcCCccccchhhhhcc-----CCCccCcccCHHH-HHH
Q 045400 13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINA----GLQRNGKSCRLRWINYL-----RPGLKRGVFNMQE-EET 82 (313)
Q Consensus 13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l----~~~Rt~~QCr~Rw~~~L-----~p~lkk~~WT~EE-D~~ 82 (313)
...+.++++||+|||+.|+++|.+||.+.|..|+..+ + +||+.||++||++++ +|.++++.|+++| +++
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~ 103 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR 103 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence 4677899999999999999999999988999999864 5 999999999999999 8999999999999 899
Q ss_pred HHHHHHHhCCc
Q 045400 83 ILTLHRLLGNK 93 (313)
Q Consensus 83 Ll~lv~~~G~~ 93 (313)
|+.++..+|++
T Consensus 104 v~~~h~~~g~~ 114 (122)
T 2roh_A 104 VLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhhH
Confidence 99999999964
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=1.1e-17 Score=118.18 Aligned_cols=52 Identities=33% Similarity=0.617 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400 17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG 69 (313)
Q Consensus 17 ~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~ 69 (313)
+++|+||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999879999999999 999999999999999984
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=118.69 Aligned_cols=58 Identities=26% Similarity=0.395 Sum_probs=55.4
Q ss_pred ccCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400 65 YLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK 123 (313)
Q Consensus 65 ~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~l~~ 123 (313)
+|+|.+++++||+|||++|+++|+.+|.+|..||+ |+|||+.||++||..+|++.+.+
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence 69999999999999999999999999999999999 88999999999999999988764
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.62 E-value=1.1e-16 Score=120.62 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=54.5
Q ss_pred cCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400 66 LRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK 123 (313)
Q Consensus 66 L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~l~~ 123 (313)
++|.+++++||+|||++|+++|.+||.+|..||++|+|||+.||++||+.++++.+..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999886543
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.62 E-value=7.8e-17 Score=119.13 Aligned_cols=57 Identities=25% Similarity=0.436 Sum_probs=49.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccC-CcCCccccchhhhhccCCCcc
Q 045400 15 PKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG-LQRNGKSCRLRWINYLRPGLK 71 (313)
Q Consensus 15 p~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~-~~Rt~~QCr~Rw~~~L~p~lk 71 (313)
...+|++||+|||++|+++|.+||..+|..||..++ .+||+.||++||.++++|.+.
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 446789999999999999999999889999998764 389999999999999998763
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.2e-16 Score=116.39 Aligned_cols=55 Identities=16% Similarity=0.411 Sum_probs=51.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400 14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG 69 (313)
Q Consensus 14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~ 69 (313)
.+.+.+++||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3678999999999999999999999889999999999 999999999999999875
No 22
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-16 Score=118.23 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcc
Q 045400 12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV 74 (313)
Q Consensus 12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~ 74 (313)
.+.|.+++++||+|||++|+++|.+||. +|..||. ++ |||+.||++||.++|+|.+++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 3579999999999999999999999996 8999999 77 89999999999999999776653
No 23
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=9.5e-16 Score=111.41 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=51.3
Q ss_pred CCCccCcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400 67 RPGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121 (313)
Q Consensus 67 ~p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk~l 121 (313)
.|.+++++||+|||++|+++|.+|| .+|..||+.|+|||+.||++||..+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 599999999999999999999999987643
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=1.4e-15 Score=107.34 Aligned_cols=50 Identities=30% Similarity=0.543 Sum_probs=46.1
Q ss_pred ccCcccCHHHHHHHHHHHHHhCC-chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 70 LKRGVFNMQEEETILTLHRLLGN-KWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 70 lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||..+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 899999999999999999999998864
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.56 E-value=2.5e-15 Score=106.13 Aligned_cols=50 Identities=34% Similarity=0.764 Sum_probs=46.9
Q ss_pred ccCcccCHHHHHHHHHHHHHhCC-chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 70 LKRGVFNMQEEETILTLHRLLGN-KWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 70 lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||..+|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 699999999999999999999998864
No 26
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.6e-16 Score=117.98 Aligned_cols=60 Identities=20% Similarity=0.391 Sum_probs=55.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-----CCCcccccccCCcCCccccchhhhhccCCCccCcc
Q 045400 14 KPKHRKGLWSPEEDQRLKNYVLQHGH-----PCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGV 74 (313)
Q Consensus 14 kp~~kkg~WT~EED~~L~~~V~kyg~-----~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~ 74 (313)
+|.+.+++||+|||++|+++|.+||. .+|..||..|+ +||+.||+.||.++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999996 67999999999 99999999999999998777654
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.55 E-value=8.9e-16 Score=108.98 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCcccccccCC-cCCccccchhhhhccC
Q 045400 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGL-QRNGKSCRLRWINYLR 67 (313)
Q Consensus 18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~-~Rt~~QCr~Rw~~~L~ 67 (313)
++|+||+|||++|+++|.+||..+|..||..++. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999876 6999999999999875
No 28
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=1.4e-15 Score=110.16 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhcc
Q 045400 16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL 66 (313)
Q Consensus 16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L 66 (313)
.+.+++||+|||++|+++|.+||..+|..||..||.+||+.||++||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456889999999999999999998899999999987899999999999875
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=7.7e-15 Score=104.11 Aligned_cols=49 Identities=29% Similarity=0.485 Sum_probs=46.2
Q ss_pred cCcccCHHHHHHHHHHHHHhC-CchhhhcccCC--CCCHHHHHHHHHHHHHH
Q 045400 71 KRGVFNMQEEETILTLHRLLG-NKWSQIAQHLP--GRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 71 kk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~--gRT~~q~knrw~~llkk 119 (313)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 68999999999 99999999999998864
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=7.4e-15 Score=106.90 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=48.9
Q ss_pred CCCccCcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400 67 RPGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLK 118 (313)
Q Consensus 67 ~p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llk 118 (313)
.|.+.+++||+|||++|+++|.+|| .+|..||++|+|||+.||++||..+|.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 4678999999999999999999999 799999999999999999999998875
No 31
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.1e-15 Score=111.36 Aligned_cols=57 Identities=28% Similarity=0.450 Sum_probs=52.6
Q ss_pred CCCccCcccCHHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 045400 67 RPGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKKKLAK 123 (313)
Q Consensus 67 ~p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk~l~~ 123 (313)
.|.+++++||+|||++|+++|.+|| .+|..||+.|+|||+.||++||..+|++.+.+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 5788999999999999999999999 78999999999999999999999998876543
No 32
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.51 E-value=7.7e-15 Score=109.60 Aligned_cols=57 Identities=28% Similarity=0.431 Sum_probs=52.5
Q ss_pred cCCCccCcccCHHHHHHHHHHHHHhC-CchhhhcccCC--CCCHHHHHHHHHHHHHHHHH
Q 045400 66 LRPGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLP--GRTDNEIKNYWHSHLKKKLA 122 (313)
Q Consensus 66 L~p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~--gRT~~q~knrw~~llkk~l~ 122 (313)
..|..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||..+|++.+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence 45678899999999999999999999 68999999999 99999999999999987654
No 33
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.51 E-value=1.6e-15 Score=114.28 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccC
Q 045400 13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKR 72 (313)
Q Consensus 13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk 72 (313)
..|.+++|+||+|||++|+++|.+||. +|..||..|+ +||+.||+.||..+|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 368899999999999999999999995 8999999999 999999999999999876665
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.48 E-value=2.4e-14 Score=105.75 Aligned_cols=51 Identities=24% Similarity=0.453 Sum_probs=46.1
Q ss_pred ccCcccCHHHHHHHHHHHHHhC-CchhhhcccCC--CCCHHHHHHHHHHHHHHH
Q 045400 70 LKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLP--GRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 70 lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~--gRT~~q~knrw~~llkk~ 120 (313)
.++++||+|||++|+++|.+|| .+|..||+.++ |||+.||++||+.++++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999999999 58999999865 999999999999988754
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-14 Score=110.26 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=51.7
Q ss_pred CCCccCcccCHHHHHHHHHHHHHhC------CchhhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 045400 67 RPGLKRGVFNMQEEETILTLHRLLG------NKWSQIAQHLPGRTDNEIKNYWHSHLKKKLA 122 (313)
Q Consensus 67 ~p~lkk~~WT~EED~~Ll~lv~~~G------~~W~~Ia~~l~gRT~~q~knrw~~llkk~l~ 122 (313)
+|.+.+++||+|||++|+++|.+|| .+|..||++|+|||+.||++||+.+|.+.++
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999 6899999999999999999999998876543
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=4.7e-14 Score=102.04 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=46.3
Q ss_pred CCccCcccCHHHHHHHHHHHHHhC-CchhhhcccCC-CCCHHHHHHHHHHHH
Q 045400 68 PGLKRGVFNMQEEETILTLHRLLG-NKWSQIAQHLP-GRTDNEIKNYWHSHL 117 (313)
Q Consensus 68 p~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~-gRT~~q~knrw~~ll 117 (313)
..+.+++||+|||++|+++|.+|| .+|..||++|+ |||+.||+.||..++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 88999999999 999999999998764
No 37
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.46 E-value=3.5e-14 Score=114.51 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=68.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccC---CcCCccccchhhhhcc-----CCCccCcccCHHHHHH-
Q 045400 12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG---LQRNGKSCRLRWINYL-----RPGLKRGVFNMQEEET- 82 (313)
Q Consensus 12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~---~~Rt~~QCr~Rw~~~L-----~p~lkk~~WT~EED~~- 82 (313)
..++++++++||+|||+.|+++|.+||.+.|..|+..++ .+||+.+|++||++++ +|.++++.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 457889999999999999999999999889999998762 3999999999999999 6999999888777665
Q ss_pred HHHHHHHhC
Q 045400 83 ILTLHRLLG 91 (313)
Q Consensus 83 Ll~lv~~~G 91 (313)
+++++..+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
No 38
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.45 E-value=3.8e-14 Score=108.89 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhc
Q 045400 6 SEKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINY 65 (313)
Q Consensus 6 ~~k~~~~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~ 65 (313)
..++....++...+++||+|||++|+++|.+|| .+|..||.+|+ +||+.||+.||.++
T Consensus 5 ~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 5 SSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccCccCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 344444567788899999999999999999999 88999999999 99999999999997
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.16 E-value=9e-15 Score=114.71 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=53.0
Q ss_pred ccCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400 65 YLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 65 ~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~ 120 (313)
.++|.+.+++||+|||++|+++|.+||.+|..||++|+|||+.||++||..++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999988864
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.44 E-value=8.8e-15 Score=122.14 Aligned_cols=84 Identities=20% Similarity=0.316 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhC
Q 045400 12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLG 91 (313)
Q Consensus 12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G 91 (313)
...|.+++|+||+|||++|+++|.+|| ..|..||..|+ |||+.||+.||..+|++.+..++|+.+-- .......
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~~~kk 120 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPDRSKK 120 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCCCC--
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cchhhhh
Confidence 467999999999999999999999999 56999999999 99999999999999999999999887631 1111223
Q ss_pred CchhhhcccC
Q 045400 92 NKWSQIAQHL 101 (313)
Q Consensus 92 ~~W~~Ia~~l 101 (313)
.+|+.|++.|
T Consensus 121 ~~~~~i~k~~ 130 (131)
T 3zqc_A 121 RKAADVPKKL 130 (131)
T ss_dssp ----------
T ss_pred hhhhhcchhc
Confidence 4577777655
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.42 E-value=9e-14 Score=107.73 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcccccc----cCCcCCccccchhhhhcc-----CCCccCc-ccCHHHHHHHHHHHHH
Q 045400 20 GLWSPEEDQRLKNYVLQHGHPCWSSVPIN----AGLQRNGKSCRLRWINYL-----RPGLKRG-VFNMQEEETILTLHRL 89 (313)
Q Consensus 20 g~WT~EED~~L~~~V~kyg~~~W~~IA~~----l~~~Rt~~QCr~Rw~~~L-----~p~lkk~-~WT~EED~~Ll~lv~~ 89 (313)
++||+|||+.|+++|.+||.++|..|+.. ++ +||+.||++||.+++ .|.++++ +..++...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998899999985 66 999999999999988 6776665 6777887889988765
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=5.2e-14 Score=106.55 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCc
Q 045400 11 AKPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGL 70 (313)
Q Consensus 11 ~~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~l 70 (313)
....|.+++|+||+|||++|+++|.+||.. |..||..| |||+.||+.||.. |....
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~ 70 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTC 70 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCC
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHc
Confidence 357899999999999999999999999955 99999998 7999999999985 44443
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=1.4e-13 Score=104.24 Aligned_cols=55 Identities=15% Similarity=0.388 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC---CCCCcccccccCCcCCccccchhhhhccC
Q 045400 12 KPKPKHRKGLWSPEEDQRLKNYVLQHG---HPCWSSVPINAGLQRNGKSCRLRWINYLR 67 (313)
Q Consensus 12 ~~kp~~kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~ 67 (313)
+.++...+++||+|||++|++||.+|| +.+|..||..|| |||+.||+.||..++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 357888999999999999999999999 357999999999 9999999999998764
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=7.7e-13 Score=100.09 Aligned_cols=51 Identities=8% Similarity=0.219 Sum_probs=46.9
Q ss_pred CCccCcccCHHHHHHHHHHHHHhC----CchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400 68 PGLKRGVFNMQEEETILTLHRLLG----NKWSQIAQHLPGRTDNEIKNYWHSHLK 118 (313)
Q Consensus 68 p~lkk~~WT~EED~~Ll~lv~~~G----~~W~~Ia~~l~gRT~~q~knrw~~llk 118 (313)
+...+++||.|||++|+.++.+|| .+|..||++|||||+.||++||..++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 579999999999999999999998754
No 45
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.32 E-value=1.7e-13 Score=109.78 Aligned_cols=56 Identities=20% Similarity=0.390 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400 12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG 69 (313)
Q Consensus 12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~ 69 (313)
...|.+++|+||+|||++|+++|.+|| ..|..||..|| |||+.||+.||..+|...
T Consensus 49 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 49 HLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLP-GRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCT-TCCHHHHHHHHHHHTC--
T ss_pred ccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHHHhcc
Confidence 367999999999999999999999999 57999999999 999999999999988753
No 46
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.99 E-value=1.6e-13 Score=107.56 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCC
Q 045400 12 KPKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68 (313)
Q Consensus 12 ~~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p 68 (313)
...|.+.+|+||+|||++|+++|.+||. +|..||..|+ |||+.||+.||..+|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 4578999999999999999999999995 7999999999 99999999999998863
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=100.05 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=44.9
Q ss_pred CccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHH
Q 045400 69 GLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSH 116 (313)
Q Consensus 69 ~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~l 116 (313)
...+++||+|||++|+++|.+||.+|..||++|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999764
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.26 E-value=5.2e-12 Score=92.13 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=45.8
Q ss_pred cCcccCHHHHHHHHHHHHHhCCchhhhc---ccCCCCCHHHHHHHHHHHHHH
Q 045400 71 KRGVFNMQEEETILTLHRLLGNKWSQIA---QHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 71 kk~~WT~EED~~Ll~lv~~~G~~W~~Ia---~~l~gRT~~q~knrw~~llkk 119 (313)
.+.+||+|||+.|+++|++||.+|..|+ +++++||..++|+||+.+.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 678999999999999997764
No 49
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.26 E-value=4e-12 Score=105.32 Aligned_cols=55 Identities=22% Similarity=0.452 Sum_probs=50.5
Q ss_pred CCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400 67 RPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121 (313)
Q Consensus 67 ~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk~l 121 (313)
.+..++++||+|||++|+++|.+||.+|..||+.|+|||+.||+.||..+|.+.+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~ 60 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSI 60 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccc
Confidence 4578999999999999999999999999999999999999999999999886543
No 50
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.23 E-value=1.1e-12 Score=105.70 Aligned_cols=54 Identities=30% Similarity=0.511 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCC
Q 045400 13 PKPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP 68 (313)
Q Consensus 13 ~kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p 68 (313)
..|.+++|+||+|||++|+.+|.+||. .|..||..|| |||+.||+.||..++..
T Consensus 47 L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 47 INPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLK-NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp SSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHH
T ss_pred HcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCC-CCCHHHHHHHHHHHHhh
Confidence 679999999999999999999999995 7999999998 99999999999987764
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.21 E-value=1.3e-11 Score=95.46 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=44.4
Q ss_pred cccCHHHHHHHHHHHHHhCC-chhhhccc----CCCCCHHHHHHHHHHHHHHH
Q 045400 73 GVFNMQEEETILTLHRLLGN-KWSQIAQH----LPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 73 ~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~----l~gRT~~q~knrw~~llkk~ 120 (313)
.+||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+.+++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 89999995 89999999999999988754
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.19 E-value=2.1e-11 Score=98.23 Aligned_cols=52 Identities=21% Similarity=0.414 Sum_probs=47.5
Q ss_pred CCccCcccCHHHHHHHHHHHHHhCC-chhhhcccC----CCCCHHHHHHHHHHHHHH
Q 045400 68 PGLKRGVFNMQEEETILTLHRLLGN-KWSQIAQHL----PGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 68 p~lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l----~gRT~~q~knrw~~llkk 119 (313)
+..++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+.+++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999996 899999965 899999999999998874
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.18 E-value=1.9e-11 Score=100.84 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=49.5
Q ss_pred cCCCccCcccCHHHHHHHHHHHHHhCC-chhhhccc----CCCCCHHHHHHHHHHHHHH
Q 045400 66 LRPGLKRGVFNMQEEETILTLHRLLGN-KWSQIAQH----LPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 66 L~p~lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~----l~gRT~~q~knrw~~llkk 119 (313)
+.+..++++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+.+++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 456778999999999999999999996 89999997 4999999999999998875
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.16 E-value=9.8e-12 Score=112.81 Aligned_cols=55 Identities=27% Similarity=0.489 Sum_probs=48.2
Q ss_pred CCccCcccCHHHHHHHHHHHHHhCCc------hhhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 045400 68 PGLKRGVFNMQEEETILTLHRLLGNK------WSQIAQHLPGRTDNEIKNYWHSHLKKKLA 122 (313)
Q Consensus 68 p~lkk~~WT~EED~~Ll~lv~~~G~~------W~~Ia~~l~gRT~~q~knrw~~llkk~l~ 122 (313)
+.+.+++||+|||++|+++|.++|.+ |..||++|||||+++||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45788999999999999999999875 99999999999999999999999988654
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.13 E-value=5.5e-11 Score=93.91 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=45.2
Q ss_pred cCcccCHHHHHHHHHHHHHhC----CchhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400 71 KRGVFNMQEEETILTLHRLLG----NKWSQIAQHLPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 71 kk~~WT~EED~~Ll~lv~~~G----~~W~~Ia~~l~gRT~~q~knrw~~llkk~ 120 (313)
.+++||.|||++|++++.+|| .+|..||+.|||||+.+|++||..++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 57999999999999999999999977653
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.10 E-value=1.4e-11 Score=97.27 Aligned_cols=48 Identities=13% Similarity=0.255 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---CCCCcccccccCCcCCccccchhhhhcc
Q 045400 18 RKGLWSPEEDQRLKNYVLQHG---HPCWSSVPINAGLQRNGKSCRLRWINYL 66 (313)
Q Consensus 18 kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L 66 (313)
.++.||+|||++|++++.+|| +.+|..||..|| |||+.||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 367899999999999999997 467999999999 999999999999864
No 57
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.08 E-value=1e-10 Score=96.61 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=47.5
Q ss_pred CCccCcccCHHHHHHHHHHHHHhCC-chhhhccc----CCCCCHHHHHHHHHHHHHHH
Q 045400 68 PGLKRGVFNMQEEETILTLHRLLGN-KWSQIAQH----LPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 68 p~lkk~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~----l~gRT~~q~knrw~~llkk~ 120 (313)
...++++||.|||+.|+++|.+||. +|+.|++. |++||+.+||+||+.+++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457899999999999999999996 89999986 48999999999999988753
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=7.1e-10 Score=80.75 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=43.6
Q ss_pred cCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHH
Q 045400 71 KRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHL 117 (313)
Q Consensus 71 kk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~ll 117 (313)
...+||+||++++++++.+||.+|..||.+||+||..+|..+|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 46799999999999999999999999999999999999999997643
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.2e-10 Score=82.59 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=46.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccC
Q 045400 14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR 67 (313)
Q Consensus 14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~ 67 (313)
+.+...++||+||+++|++++.+|| .+|..||..|| +||..||+++|....+
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhcC
Confidence 3446778999999999999999999 78999999999 9999999999976543
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=86.05 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=57.7
Q ss_pred cccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccC-----CCCCHHHHHHHHHHHHHHHHHH
Q 045400 56 KSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHL-----PGRTDNEIKNYWHSHLKKKLAK 123 (313)
Q Consensus 56 ~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l-----~gRT~~q~knrw~~llkk~l~~ 123 (313)
.=+.++|.++|.| .+||.||+..|++|+++|+.+|..|+..+ ++||..++|+||..+.++.+..
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4568899999976 89999999999999999999999999998 5899999999999988876544
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.80 E-value=1.8e-09 Score=78.77 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCcccc---cccCCcCCccccchhhhhccC
Q 045400 17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVP---INAGLQRNGKSCRLRWINYLR 67 (313)
Q Consensus 17 ~kkg~WT~EED~~L~~~V~kyg~~~W~~IA---~~l~~~Rt~~QCr~Rw~~~L~ 67 (313)
..+.+||+|||+.|+++|++||. .|..|+ ..++ +||...+++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 36788999999999999999996 899999 4555 9999999999998664
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.79 E-value=2.6e-09 Score=106.00 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=43.5
Q ss_pred cccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 73 GVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 73 ~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
.+||+||.+++++++.+||+.|..||+.+++||..||+++|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999875553
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.77 E-value=5.8e-09 Score=78.51 Aligned_cols=49 Identities=12% Similarity=0.210 Sum_probs=43.9
Q ss_pred CccCcccCHHHHHHHHHHHHHhC----CchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400 69 GLKRGVFNMQEEETILTLHRLLG----NKWSQIAQHLPGRTDNEIKNYWHSHLK 118 (313)
Q Consensus 69 ~lkk~~WT~EED~~Ll~lv~~~G----~~W~~Ia~~l~gRT~~q~knrw~~llk 118 (313)
..+.++||.|||++|.+++.+|+ .+|..||.+| |||..+|+.||..+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 45678999999999999999997 5699999998 9999999999988644
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.74 E-value=8.3e-09 Score=92.93 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=46.2
Q ss_pred cCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 71 KRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 71 kk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
...+||+||++++++++.+||+.|..||+.|++||..||+++|..+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999988775
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.68 E-value=4e-09 Score=79.44 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=43.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcC---CCCCcccccccCCcCCccccchhhhhccC
Q 045400 15 PKHRKGLWSPEEDQRLKNYVLQHG---HPCWSSVPINAGLQRNGKSCRLRWINYLR 67 (313)
Q Consensus 15 p~~kkg~WT~EED~~L~~~V~kyg---~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~ 67 (313)
.....+.||.|||++|.+|+.+|+ +.+|..||+.+ |||+.||+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 345578899999999999999997 46799999986 5999999999987654
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.56 E-value=1.6e-08 Score=76.28 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---CCCcccccccCCcCCccccchhhhhccCC
Q 045400 19 KGLWSPEEDQRLKNYVLQHGH---PCWSSVPINAGLQRNGKSCRLRWINYLRP 68 (313)
Q Consensus 19 kg~WT~EED~~L~~~V~kyg~---~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p 68 (313)
...||.||+++|..++..|+. .+|..||..|| +||..+|+.||...+.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 357999999999999999974 56999999999 99999999999987653
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=1.1e-07 Score=71.59 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=42.6
Q ss_pred cCcccCHHHHHHHHHHHHHhCC----chhhhcccCCCCCHHHHHHHHHHHH
Q 045400 71 KRGVFNMQEEETILTLHRLLGN----KWSQIAQHLPGRTDNEIKNYWHSHL 117 (313)
Q Consensus 71 kk~~WT~EED~~Ll~lv~~~G~----~W~~Ia~~l~gRT~~q~knrw~~ll 117 (313)
...+||.||+++|..++..|+. +|..||..|+|||..+|+.||..++
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3468999999999999999984 5999999999999999999998763
No 68
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.45 E-value=5.3e-08 Score=87.73 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccC
Q 045400 16 KHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLR 67 (313)
Q Consensus 16 ~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~ 67 (313)
....++||+||++++++++.+|| ++|..||..|+ +||..||+.+|..+.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 35678999999999999999999 78999999999 9999999999987664
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.44 E-value=4.2e-08 Score=71.04 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHc--------CCCCCccccc-ccCCcCCccccchhhhhccC
Q 045400 19 KGLWSPEEDQRLKNYVLQH--------GHPCWSSVPI-NAGLQRNGKSCRLRWINYLR 67 (313)
Q Consensus 19 kg~WT~EED~~L~~~V~ky--------g~~~W~~IA~-~l~~~Rt~~QCr~Rw~~~L~ 67 (313)
|.+||+|||+.|++.|.+| |..-|..+|+ .++ ++|-.+||+||..+|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5789999999999999999 5556999999 788 9999999999999875
No 70
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.33 E-value=1.2e-07 Score=71.12 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCcccccccCCcCCccccchhhh
Q 045400 18 RKGLWSPEEDQRLKNYVLQHGH---PCWSSVPINAGLQRNGKSCRLRWI 63 (313)
Q Consensus 18 kkg~WT~EED~~L~~~V~kyg~---~~W~~IA~~l~~~Rt~~QCr~Rw~ 63 (313)
..+.||.||+++|..|+++|+. .+|.+||+.|| |||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 3567999999999999999963 47999999999 999999999986
No 71
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.31 E-value=4.8e-07 Score=65.40 Aligned_cols=47 Identities=26% Similarity=0.457 Sum_probs=42.2
Q ss_pred CcccCHHHHHHHHHHHHHh--------CCc-hhhhcc-cCCCCCHHHHHHHHHHHHH
Q 045400 72 RGVFNMQEEETILTLHRLL--------GNK-WSQIAQ-HLPGRTDNEIKNYWHSHLK 118 (313)
Q Consensus 72 k~~WT~EED~~Ll~lv~~~--------G~~-W~~Ia~-~l~gRT~~q~knrw~~llk 118 (313)
+.+||+|||..|++.|.++ |+. |..+++ .+|++|-.++++||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5789999999999999999 544 999999 7999999999999987653
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.7e-06 Score=63.19 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=45.3
Q ss_pred CCCccCcccCHHHHHHHHHHHHHhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 045400 67 RPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQ-HLPGRTDNEIKNYWHS 115 (313)
Q Consensus 67 ~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~-~l~gRT~~q~knrw~~ 115 (313)
.|.++..+||+||.++..+++.+||..|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 467888999999999999999999999999999 5899999999998864
No 73
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.18 E-value=5.7e-06 Score=77.92 Aligned_cols=103 Identities=10% Similarity=0.127 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccch-------hhhhc---------------------------
Q 045400 20 GLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL-------RWINY--------------------------- 65 (313)
Q Consensus 20 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~-------Rw~~~--------------------------- 65 (313)
+.||..|...++.++.+||-.+|..||..|+ ++|...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 899877654 12100
Q ss_pred ----------------cCCCccCcccCHHHHHHHHHHHHHhCC----chhhhc---c---------cCCCCCHHHHHHHH
Q 045400 66 ----------------LRPGLKRGVFNMQEEETILTLHRLLGN----KWSQIA---Q---------HLPGRTDNEIKNYW 113 (313)
Q Consensus 66 ----------------L~p~lkk~~WT~EED~~Ll~lv~~~G~----~W~~Ia---~---------~l~gRT~~q~knrw 113 (313)
..+..+...||+|||..||-++.+||- .|..|. + ++..||+.+|..|-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 012224458999999999999999996 499996 2 45789999999999
Q ss_pred HHHHHHHHHH
Q 045400 114 HSHLKKKLAK 123 (313)
Q Consensus 114 ~~llkk~l~~ 123 (313)
..|++-..+.
T Consensus 270 ~tLi~~iekE 279 (304)
T 1ofc_X 270 NTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998754443
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.4e-06 Score=63.63 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=45.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCCccccc-ccCCcCCccccchhhhhc
Q 045400 14 KPKHRKGLWSPEEDQRLKNYVLQHGHPCWSSVPI-NAGLQRNGKSCRLRWINY 65 (313)
Q Consensus 14 kp~~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~-~l~~~Rt~~QCr~Rw~~~ 65 (313)
.|.+....||+||-+++.+++.+|| ++|..|+. .|+ +|+..||.+-|..+
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence 5788889999999999999999999 68999998 588 99999999887654
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.07 E-value=8.6e-07 Score=66.52 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=38.8
Q ss_pred CcccCHHHHHHHHHHHHHhCC----chhhhcccCCCCCHHHHHHHHH
Q 045400 72 RGVFNMQEEETILTLHRLLGN----KWSQIAQHLPGRTDNEIKNYWH 114 (313)
Q Consensus 72 k~~WT~EED~~Ll~lv~~~G~----~W~~Ia~~l~gRT~~q~knrw~ 114 (313)
.++||.||+++|..++.+|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 6999999999999999999985
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.05 E-value=3.7e-06 Score=65.38 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=43.8
Q ss_pred cccCHHHHHHHHHHHHHhCC---chhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400 73 GVFNMQEEETILTLHRLLGN---KWSQIAQHLPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 73 ~~WT~EED~~Ll~lv~~~G~---~W~~Ia~~l~gRT~~q~knrw~~llkk~ 120 (313)
-.||+|||+.||..+++-|. .|..||+.|.+|+++||++||+.|++-.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 37999999999999999985 6999999998999999999999987743
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.24 E-value=8.7e-07 Score=65.36 Aligned_cols=45 Identities=16% Similarity=0.344 Sum_probs=41.9
Q ss_pred ccCHHHHHHHHHHHHHhCC---chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 74 VFNMQEEETILTLHRLLGN---KWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 74 ~WT~EED~~Ll~lv~~~G~---~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
-||.|||..||..+++-|. .|..||+.| +||++||++||+.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999996 699999999 99999999999998763
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.87 E-value=2.5e-05 Score=61.28 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=50.7
Q ss_pred hhhhhccCCCccCcccCHHHHHHHHHHHHHhCCchhhhcccCC-----CCCHHHHHHHHHHHHHHHHHH
Q 045400 60 LRWINYLRPGLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLP-----GRTDNEIKNYWHSHLKKKLAK 123 (313)
Q Consensus 60 ~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~-----gRT~~q~knrw~~llkk~l~~ 123 (313)
+.|..+|. ...||.||...|++|+++|.-+|..|+..+. .||..++|.||..+.++.++.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34666664 3689999999999999999999999998763 799999999999988876543
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.72 E-value=4.7e-05 Score=56.65 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=41.5
Q ss_pred cCcccCHHHHHHHHHHHHHhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 045400 71 KRGVFNMQEEETILTLHRLLGNKWSQIAQ-HLPGRTDNEIKNYWHS 115 (313)
Q Consensus 71 kk~~WT~EED~~Ll~lv~~~G~~W~~Ia~-~l~gRT~~q~knrw~~ 115 (313)
...+||+||..++.+++.+||..|..|++ .|++||..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35689999999999999999999999999 5899999999999864
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.66 E-value=4.2e-05 Score=60.16 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=41.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHH
Q 045400 72 RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHS 115 (313)
Q Consensus 72 k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~ 115 (313)
...||+||.+++.++...||+.|..|+..||+||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999864
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.65 E-value=1.5e-05 Score=79.18 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhcc
Q 045400 17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL 66 (313)
Q Consensus 17 ~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L 66 (313)
....+||.||-+++++++.+|| ++|..||..|+ +||..||+..|.++.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4578999999999999999999 78999999999 999999999887643
No 82
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.56 E-value=3.6e-05 Score=57.31 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCccccc-ccCCcCCccccchhhhhc
Q 045400 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPI-NAGLQRNGKSCRLRWINY 65 (313)
Q Consensus 18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~-~l~~~Rt~~QCr~Rw~~~ 65 (313)
....||+||-+++.+++.+|| ++|..|+. .|+ +|+..+|.+-|..+
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHhh
Confidence 345799999999999999999 68999999 588 99999999987643
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.52 E-value=2.8e-05 Score=61.07 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCcccccccC----CcCCccccchhhhhccC
Q 045400 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG----LQRNGKSCRLRWINYLR 67 (313)
Q Consensus 18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~----~~Rt~~QCr~Rw~~~L~ 67 (313)
....||.||+..|.+++.+|+ .+|..|+..+. .+||..++++||..+..
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999999 56999999983 27999999999987554
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.51 E-value=3.6e-05 Score=60.53 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhc
Q 045400 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINY 65 (313)
Q Consensus 19 kg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~ 65 (313)
...||+||-+++.+++..|| ++|..||..++ +||..+|.+.|..+
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhcc
Confidence 56799999999999999999 78999999999 99999999987643
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.39 E-value=0.00018 Score=55.92 Aligned_cols=57 Identities=14% Similarity=0.263 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC--CCCcccccccCCcCCccccchhhhh
Q 045400 7 EKPIAKPKPKHRKGLWSPEEDQRLKNYVLQHGH--PCWSSVPINAGLQRNGKSCRLRWIN 64 (313)
Q Consensus 7 ~k~~~~~kp~~kkg~WT~EED~~L~~~V~kyg~--~~W~~IA~~l~~~Rt~~QCr~Rw~~ 64 (313)
-|-+...++..+--.||.|||..|+.+..+-|. ..|..||..++ +|++.|+++|++.
T Consensus 21 AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 21 ANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp CCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred eccceecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 344434566677788999999999999999875 46999999999 9999999999987
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.37 E-value=0.00076 Score=59.48 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=68.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcC--CCCCcccccc--cCCcCCccccch-------hhhhcc-----------------
Q 045400 15 PKHRKGLWSPEEDQRLKNYVLQHG--HPCWSSVPIN--AGLQRNGKSCRL-------RWINYL----------------- 66 (313)
Q Consensus 15 p~~kkg~WT~EED~~L~~~V~kyg--~~~W~~IA~~--l~~~Rt~~QCr~-------Rw~~~L----------------- 66 (313)
|+-....||..|-..|+.++.+|| ..+|..|+.. +. +|+...++. +....+
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKV 81 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 445566799999999999999999 5789999854 44 565533322 000000
Q ss_pred ------------------------------------------CC-----CccCcccCHHHHHHHHHHHHHhC-Cchhhhc
Q 045400 67 ------------------------------------------RP-----GLKRGVFNMQEEETILTLHRLLG-NKWSQIA 98 (313)
Q Consensus 67 ------------------------------------------~p-----~lkk~~WT~EED~~Ll~lv~~~G-~~W~~Ia 98 (313)
-| ......||++||..||.++.+|| +.|..|.
T Consensus 82 ~~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir 161 (211)
T 4b4c_A 82 KGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK 161 (211)
T ss_dssp -CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence 00 00112599999999999999999 8899887
Q ss_pred c--cC------------CCCCHHHHHHHHHHHHHH
Q 045400 99 Q--HL------------PGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 99 ~--~l------------~gRT~~q~knrw~~llkk 119 (313)
. .| ..+++..+..|...+|+-
T Consensus 162 ~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 162 MDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp HCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 5 21 124566899998777663
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.98 E-value=6.9e-05 Score=57.46 Aligned_cols=50 Identities=20% Similarity=0.460 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC---------CCCcccccccC---CcCCccccchhhhhcc
Q 045400 17 HRKGLWSPEEDQRLKNYVLQHGH---------PCWSSVPINAG---LQRNGKSCRLRWINYL 66 (313)
Q Consensus 17 ~kkg~WT~EED~~L~~~V~kyg~---------~~W~~IA~~l~---~~Rt~~QCr~Rw~~~L 66 (313)
.+...||.+|...|+++...... ..|..||..|. -.||+.||+.+|.+..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999976421 14999998853 4699999999998754
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.81 E-value=0.00061 Score=52.09 Aligned_cols=49 Identities=18% Similarity=0.430 Sum_probs=40.0
Q ss_pred CcccCHHHHHHHHHHHHHhCC----------chhhhcccCC----CCCHHHHHHHHHHHHHHH
Q 045400 72 RGVFNMQEEETILTLHRLLGN----------KWSQIAQHLP----GRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 72 k~~WT~EED~~Ll~lv~~~G~----------~W~~Ia~~l~----gRT~~q~knrw~~llkk~ 120 (313)
...||.+|-..||.+...+.. .|..||..|. .||+.||+.+|..|.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999976321 4999998762 699999999999876653
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.77 E-value=0.00023 Score=52.46 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=42.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCC--CCCcccccccCCcCCccccchhhhhccC
Q 045400 16 KHRKGLWSPEEDQRLKNYVLQHGH--PCWSSVPINAGLQRNGKSCRLRWINYLR 67 (313)
Q Consensus 16 ~~kkg~WT~EED~~L~~~V~kyg~--~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~ 67 (313)
.-.--.||.|||..|+..+.+-|+ .-|..||..+ +|++.|+..||...+.
T Consensus 11 ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 344457999999999999999985 3599999887 5999999999987543
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.12 E-value=0.012 Score=56.78 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccch-------hhhhc---------------------------
Q 045400 20 GLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRL-------RWINY--------------------------- 65 (313)
Q Consensus 20 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~-------Rw~~~--------------------------- 65 (313)
+-||.-|=..++.++.+||-.+-..||..|+.++|...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998889999999965677766553 11100
Q ss_pred -------------c---CCCc--cCcccCHHHHHHHHHHHHHhCC----chhhhcc------------cCCCCCHHHHHH
Q 045400 66 -------------L---RPGL--KRGVFNMQEEETILTLHRLLGN----KWSQIAQ------------HLPGRTDNEIKN 111 (313)
Q Consensus 66 -------------L---~p~l--kk~~WT~EED~~Ll~lv~~~G~----~W~~Ia~------------~l~gRT~~q~kn 111 (313)
| .+.. +...||++||..||-++.+||- .|..|-. +|..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 0111 3446999999999999999994 4998843 247799999999
Q ss_pred HHHHHHHHH
Q 045400 112 YWHSHLKKK 120 (313)
Q Consensus 112 rw~~llkk~ 120 (313)
|-..|++-.
T Consensus 284 Rc~tLi~~I 292 (374)
T 2y9y_A 284 RGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.89 E-value=0.017 Score=42.18 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=41.7
Q ss_pred ccCcccCHHHHHHHHHHHHHhCCc---hhhhcccC--CCCCHHHHHHHHHHHHH
Q 045400 70 LKRGVFNMQEEETILTLHRLLGNK---WSQIAQHL--PGRTDNEIKNYWHSHLK 118 (313)
Q Consensus 70 lkk~~WT~EED~~Ll~lv~~~G~~---W~~Ia~~l--~gRT~~q~knrw~~llk 118 (313)
..+-.||+|..++++++|.++|.. +..|.+.| +|.|..+|+.|.++|..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 356689999999999999999954 67888875 79999999999987654
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.45 E-value=0.0057 Score=47.85 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCcccccccC----CcCCccccchhhhhccC
Q 045400 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAG----LQRNGKSCRLRWINYLR 67 (313)
Q Consensus 18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~----~~Rt~~QCr~Rw~~~L~ 67 (313)
+-..||.||...|.+++.+|+ .+|.-|+.... ..||..+.++||..+..
T Consensus 29 ~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999 56999998864 26999999999987653
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.88 E-value=0.16 Score=47.68 Aligned_cols=47 Identities=15% Similarity=0.317 Sum_probs=42.0
Q ss_pred cccCHHHHHHHHHHHHHhCC-chhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 73 GVFNMQEEETILTLHRLLGN-KWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 73 ~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+.||..|...++.++.+||. .|..||..|+|+|..+|+.++.....+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 46999999999999999995 699999999999999998887766654
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=90.87 E-value=0.12 Score=37.63 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=35.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCC--CcccccccCC-cCCccccchhhhhc
Q 045400 16 KHRKGLWSPEEDQRLKNYVLQHGHPC--WSSVPINAGL-QRNGKSCRLRWINY 65 (313)
Q Consensus 16 ~~kkg~WT~EED~~L~~~V~kyg~~~--W~~IA~~l~~-~Rt~~QCr~Rw~~~ 65 (313)
+..+-.||+|.-+++.+||...|... +..|.+.|+. |.|..+++.|.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 44566799999999999999999331 4566655442 56777777765543
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.57 E-value=0.25 Score=43.13 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=41.8
Q ss_pred CccCcccCHHHHHHHHHHHHHhC---Cchhhhccc--CCCCCHHHHHHHHHHHHHHH
Q 045400 69 GLKRGVFNMQEEETILTLHRLLG---NKWSQIAQH--LPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 69 ~lkk~~WT~EED~~Ll~lv~~~G---~~W~~Ia~~--l~gRT~~q~knrw~~llkk~ 120 (313)
.-....||+.|-..|++++.+|| .+|..|++. |.++|...|+..+..++...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 34567899999999999999999 469999864 78999999999887766653
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.34 E-value=0.19 Score=46.32 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCccccc
Q 045400 20 GLWSPEEDQRLKNYVLQHGHPCWSSVPI 47 (313)
Q Consensus 20 g~WT~EED~~L~~~V~kyg~~~W~~IA~ 47 (313)
..|+.+||..|+..|.+||.+.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999954
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=75.00 E-value=8.5 Score=35.27 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=43.0
Q ss_pred CcccCHHHHHHHHHHHHHhC---Cchhhhcc--cCCCCCHHHHHHHHHHHHHHH
Q 045400 72 RGVFNMQEEETILTLHRLLG---NKWSQIAQ--HLPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 72 k~~WT~EED~~Ll~lv~~~G---~~W~~Ia~--~l~gRT~~q~knrw~~llkk~ 120 (313)
+++||+.|-..|++.+.+|| .+|..|+. .|+.++...++.-+..++..-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999 47999986 478999999999998887753
No 98
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=72.21 E-value=2 Score=36.62 Aligned_cols=30 Identities=27% Similarity=0.681 Sum_probs=23.6
Q ss_pred CCCCCCCCCCHHHHHHH--------HHHHHHcCCCCCcccc
Q 045400 14 KPKHRKGLWSPEEDQRL--------KNYVLQHGHPCWSSVP 46 (313)
Q Consensus 14 kp~~kkg~WT~EED~~L--------~~~V~kyg~~~W~~IA 46 (313)
=|.-..|.||+|+|+.| ..+++||| |..|.
T Consensus 109 iP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp SCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 36678899999999987 57888888 55554
No 99
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=63.54 E-value=1.8 Score=33.02 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC-------ccCcccCHHHHHHHHH
Q 045400 27 DQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG-------LKRGVFNMQEEETILT 85 (313)
Q Consensus 27 D~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~-------lkk~~WT~EED~~Ll~ 85 (313)
+.+|.++|..|| |..+++.+. ..|.. .+|. +++.||-.+..+.|--
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lYL 70 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIYL 70 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHHH
Confidence 678999999999 999987766 22332 3444 3578999998887653
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=61.21 E-value=7.3 Score=26.71 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 78 QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 78 EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+.+..++.++...|..+.+||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566667667788999999999 88999999887665443
No 101
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=59.37 E-value=3.2 Score=33.57 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=34.7
Q ss_pred CCCcccccccCCcCCc----cccchhhhhccCCCccCcccCHHHHHHHHHHHHH
Q 045400 40 PCWSSVPINAGLQRNG----KSCRLRWINYLRPGLKRGVFNMQEEETILTLHRL 89 (313)
Q Consensus 40 ~~W~~IA~~l~~~Rt~----~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~ 89 (313)
+.|..||..++...+. ...+..|.++|.|- ...+++|-..|.+-|..
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~~ 114 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVLM 114 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHHH
Confidence 4699999999755433 46788899998763 34788888888776653
No 102
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=57.89 E-value=9 Score=26.99 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHH----hCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 78 QEEETILTLHRL----LGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 78 EED~~Ll~lv~~----~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+.+..++.+.-- .|..|.+||..+ |-|...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 445555666554 577899999999 99999999987765544
No 103
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=54.73 E-value=18 Score=34.69 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=39.5
Q ss_pred cccCHHHHHHHHHHHHHhCCc-hhhhcccCC-CCCHHHHHHHHHHHHH
Q 045400 73 GVFNMQEEETILTLHRLLGNK-WSQIAQHLP-GRTDNEIKNYWHSHLK 118 (313)
Q Consensus 73 ~~WT~EED~~Ll~lv~~~G~~-W~~Ia~~l~-gRT~~q~knrw~~llk 118 (313)
+.||.-|=..++.++.+||.. -..||..|. |+|..+|+.+......
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 469999999999999999954 899999996 9999999976655544
No 104
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=52.51 E-value=8.9 Score=26.63 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHHHHHH----HhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 78 QEEETILTLHR----LLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 78 EED~~Ll~lv~----~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+.+..++.+.. ..|..+.+||+.| |-|...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34455555554 3477899999999 99999999987765543
No 105
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=50.96 E-value=9.3 Score=30.25 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=29.2
Q ss_pred HHHHHHHhCC--------chhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400 83 ILTLHRLLGN--------KWSQIAQHLPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 83 Ll~lv~~~G~--------~W~~Ia~~l~gRT~~q~knrw~~llkk~ 120 (313)
|..+|...|+ .|..|++.|.--.+..++.+|..+|-+-
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 6677777774 6999999873333789999999988753
No 106
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=49.18 E-value=23 Score=25.93 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 78 QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 78 EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+.+..++.++...|-.-.+||+.| |.+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445556667666788899999999 99999999988775554
No 107
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=48.44 E-value=23 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=26.7
Q ss_pred HHHHHHHhCC--------chhhhcccCCC-CC---HHHHHHHHHHHHHH
Q 045400 83 ILTLHRLLGN--------KWSQIAQHLPG-RT---DNEIKNYWHSHLKK 119 (313)
Q Consensus 83 Ll~lv~~~G~--------~W~~Ia~~l~g-RT---~~q~knrw~~llkk 119 (313)
|..+|.+.|+ .|..|++.|.- .+ +.+++.+|.++|-+
T Consensus 49 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 49 LHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 6666666763 69999999822 22 46888889888765
No 108
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.19 E-value=20 Score=28.28 Aligned_cols=39 Identities=13% Similarity=0.263 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC--------chhhhcccCCCCC----HHHHHHHHHHHHHHH
Q 045400 82 TILTLHRLLGN--------KWSQIAQHLPGRT----DNEIKNYWHSHLKKK 120 (313)
Q Consensus 82 ~Ll~lv~~~G~--------~W~~Ia~~l~gRT----~~q~knrw~~llkk~ 120 (313)
+|..+|.+.|+ .|..|++.|.--+ ...++.+|.++|.+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 36777777774 6999999882211 568899999988864
No 109
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.76 E-value=4.1 Score=32.38 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=28.5
Q ss_pred HHHHHHHHcC-------CCCCcccccccCCcCCccccchhhhhccCC
Q 045400 29 RLKNYVLQHG-------HPCWSSVPINAGLQRNGKSCRLRWINYLRP 68 (313)
Q Consensus 29 ~L~~~V~kyg-------~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p 68 (313)
+|-.+|.+.| .+.|..||..++... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 4666666665 246999999988444 77888888888875
No 110
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.42 E-value=42 Score=26.61 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=27.6
Q ss_pred HHHHHHHhCC--------chhhhcccCCC-C-C--HHHHHHHHHHHHHHH
Q 045400 83 ILTLHRLLGN--------KWSQIAQHLPG-R-T--DNEIKNYWHSHLKKK 120 (313)
Q Consensus 83 Ll~lv~~~G~--------~W~~Ia~~l~g-R-T--~~q~knrw~~llkk~ 120 (313)
|..+|.+.|+ .|..|++.|.- . + +..+|.+|.++|-+-
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 6677777774 69999998822 1 1 358899999888764
No 111
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=42.26 E-value=32 Score=27.78 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=26.5
Q ss_pred HHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 84 LTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 84 l~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+.+....|-...+||+.| |-+...|+.+....+++
T Consensus 144 l~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 144 IERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 334344567899999999 89999999988775543
No 112
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=41.53 E-value=29 Score=27.69 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC--------chhhhcccCCC-CC---HHHHHHHHHHHHHHHH
Q 045400 82 TILTLHRLLGN--------KWSQIAQHLPG-RT---DNEIKNYWHSHLKKKL 121 (313)
Q Consensus 82 ~Ll~lv~~~G~--------~W~~Ia~~l~g-RT---~~q~knrw~~llkk~l 121 (313)
+|..+|.+.|+ .|.+|++.|.- .+ +..+|.+|.++|.+--
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 36667777764 69999998822 22 4588999988887643
No 113
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=41.15 E-value=30 Score=27.66 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC--------chhhhcccC--CCC---CHHHHHHHHHHHHHHH
Q 045400 82 TILTLHRLLGN--------KWSQIAQHL--PGR---TDNEIKNYWHSHLKKK 120 (313)
Q Consensus 82 ~Ll~lv~~~G~--------~W~~Ia~~l--~gR---T~~q~knrw~~llkk~ 120 (313)
+|..+|.+.|+ .|..|++.| +.. ....+|.+|..+|.+-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46777777774 699999988 322 2578899999988764
No 114
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=40.56 E-value=15 Score=29.47 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=27.8
Q ss_pred HHHHHHHhCC--------chhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400 83 ILTLHRLLGN--------KWSQIAQHLPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 83 Ll~lv~~~G~--------~W~~Ia~~l~gRT~~q~knrw~~llkk~ 120 (313)
|..+|.+.|+ .|..|++.|.--++..++..|.++|-+-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 5555555553 5999999873333889999999988764
No 115
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=39.88 E-value=6.9 Score=30.44 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=29.2
Q ss_pred HHHHHHHHcC-------CCCCcccccccCCcCC----ccccchhhhhccCCC
Q 045400 29 RLKNYVLQHG-------HPCWSSVPINAGLQRN----GKSCRLRWINYLRPG 69 (313)
Q Consensus 29 ~L~~~V~kyg-------~~~W~~IA~~l~~~Rt----~~QCr~Rw~~~L~p~ 69 (313)
+|-.+|.+.| .+.|..||..++...+ +.+++..|.++|.|-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4666777665 2469999999875432 367788898888763
No 116
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=39.63 E-value=5.7 Score=31.60 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=28.2
Q ss_pred HHHHHHHHcC-------CCCCcccccccCCcCC---ccccchhhhhccCC
Q 045400 29 RLKNYVLQHG-------HPCWSSVPINAGLQRN---GKSCRLRWINYLRP 68 (313)
Q Consensus 29 ~L~~~V~kyg-------~~~W~~IA~~l~~~Rt---~~QCr~Rw~~~L~p 68 (313)
+|-.+|.+.| .+.|..||..++...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4677777775 3469999999885432 35667778887765
No 117
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=39.57 E-value=33 Score=23.92 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=31.3
Q ss_pred cCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 75 FNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 75 WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+|+.|-+.| .++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455554444 444 5677899999999 88999999988776554
No 118
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.88 E-value=43 Score=22.12 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 80 EETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 80 D~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+..++.+ ...|..-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455666 45687889999999 89999999988876654
No 119
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=37.16 E-value=25 Score=29.92 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=19.3
Q ss_pred ccchhhhhccC-CCccCcccCHHHHHHHH
Q 045400 57 SCRLRWINYLR-PGLKRGVFNMQEEETIL 84 (313)
Q Consensus 57 QCr~Rw~~~L~-p~lkk~~WT~EED~~Ll 84 (313)
++-+.|..-.. |.-..|-||+|+|+.|.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 33444444333 56788999999999887
No 120
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=36.87 E-value=34 Score=25.41 Aligned_cols=43 Identities=28% Similarity=0.212 Sum_probs=32.3
Q ss_pred ccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 74 VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 74 ~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 35666555544 45 7788899999999 89999999988775544
No 121
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.39 E-value=30 Score=25.17 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHH----hCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 78 QEEETILTLHRL----LGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 78 EED~~Ll~lv~~----~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+.+..++.+.-- .|..+.+||..| |-|...|+.+-...+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 345555555544 467899999999 99999999877665443
No 122
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.93 E-value=46 Score=24.68 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=34.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 72 RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 72 k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
....|+.|-+.|..++ .|..-.+||..| |-+...|+.+...++++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3457777776655544 788899999999 99999999999887665
No 123
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=35.54 E-value=33 Score=27.43 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=49.3
Q ss_pred CCCCCCCHHHH--HHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhCC--
Q 045400 17 HRKGLWSPEED--QRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLGN-- 92 (313)
Q Consensus 17 ~kkg~WT~EED--~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G~-- 92 (313)
.=+.+|.+.+. +.|.+.....|.. ...++ .++ ||... --+|..+|.+.|+
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P-~i~-gk~lD-----------------------L~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQGIT-MDELP-LIG-GCELD-----------------------LACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTTCC-CSSCC-EET-TEECC-----------------------HHHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcCCC-CCCCC-cCC-CEecc-----------------------HHHHHHHHHHcCcHH
Confidence 33557988775 4566666777743 54454 233 34332 1236777777774
Q ss_pred ------chhhhcccC--CCC---CHHHHHHHHHHHHHH
Q 045400 93 ------KWSQIAQHL--PGR---TDNEIKNYWHSHLKK 119 (313)
Q Consensus 93 ------~W~~Ia~~l--~gR---T~~q~knrw~~llkk 119 (313)
.|..|+..| |.- ....++.+|.++|-+
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 699999988 322 246889999998876
No 124
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=35.21 E-value=35 Score=28.03 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC--------chhhhcccC--CCC---CHHHHHHHHHHHHHHH
Q 045400 82 TILTLHRLLGN--------KWSQIAQHL--PGR---TDNEIKNYWHSHLKKK 120 (313)
Q Consensus 82 ~Ll~lv~~~G~--------~W~~Ia~~l--~gR---T~~q~knrw~~llkk~ 120 (313)
+|..+|.+.|+ .|.+|++.| +.. ....++..|..+|.+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 36677777774 699999988 322 2568899999988764
No 125
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=35.01 E-value=47 Score=26.89 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=24.1
Q ss_pred HHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 88 RLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 88 ~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
...|-...+||..| |-+...|+.+....+++
T Consensus 153 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 153 ELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33466789999999 89999999987765443
No 126
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.50 E-value=34 Score=23.41 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=32.9
Q ss_pred cccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 73 GVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 73 ~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
..+|+.|-+.|.. + ..|..-.+||+.+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466666655544 4 5677899999999 88999999988776554
No 127
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.76 E-value=24 Score=28.89 Aligned_cols=43 Identities=9% Similarity=0.068 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400 78 QEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121 (313)
Q Consensus 78 EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk~l 121 (313)
+-|.+|+.+..+.| -.|.+||+.+ |-|...|+.|++.+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 55788888888777 4699999999 9999999999987665543
No 128
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=33.60 E-value=12 Score=30.94 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=35.9
Q ss_pred HHHHHHHHcC-------CCCCcccccccCCcCC----ccccchhhhhccCC--CccCcccCHHHHHHHHHH
Q 045400 29 RLKNYVLQHG-------HPCWSSVPINAGLQRN----GKSCRLRWINYLRP--GLKRGVFNMQEEETILTL 86 (313)
Q Consensus 29 ~L~~~V~kyg-------~~~W~~IA~~l~~~Rt----~~QCr~Rw~~~L~p--~lkk~~WT~EED~~Ll~l 86 (313)
+|-.+|.+.| .+.|..||..++...+ +.+++..|.++|.| ...++.=.++|-+.-++-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~~~ 138 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDS 138 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 3555666654 2459999999875442 35678888888887 234455455554444443
No 129
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.01 E-value=8.3 Score=31.05 Aligned_cols=40 Identities=25% Similarity=0.486 Sum_probs=28.1
Q ss_pred HHHHHHHHcCC-------CCCcccccccCCcCC----ccccchhhhhccCC
Q 045400 29 RLKNYVLQHGH-------PCWSSVPINAGLQRN----GKSCRLRWINYLRP 68 (313)
Q Consensus 29 ~L~~~V~kyg~-------~~W~~IA~~l~~~Rt----~~QCr~Rw~~~L~p 68 (313)
+|-.+|.+.|. +.|..||..++...+ +.+++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46666766652 469999999885443 35677888888876
No 130
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=32.96 E-value=36 Score=24.56 Aligned_cols=43 Identities=23% Similarity=0.189 Sum_probs=32.7
Q ss_pred ccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 74 VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 74 ~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
..|+.|-+.|.. + ..|..-.+||+.| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655544 4 5678899999999 89999999988776554
No 131
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.10 E-value=48 Score=25.62 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 78 QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 78 EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
+.+..++.++...|-...+||..| |-+...|+.+....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345556666667788899999999 89999999887765543
No 132
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.18 E-value=42 Score=24.47 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=32.2
Q ss_pred ccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 74 VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 74 ~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
..|+.|-+.| .++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3555555554 444 5788899999999 99999999988776554
No 133
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=30.70 E-value=21 Score=26.96 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=25.6
Q ss_pred HHHHHHHhC--------CchhhhcccC--CC-C-CHHHHHHHHHHHHHH
Q 045400 83 ILTLHRLLG--------NKWSQIAQHL--PG-R-TDNEIKNYWHSHLKK 119 (313)
Q Consensus 83 Ll~lv~~~G--------~~W~~Ia~~l--~g-R-T~~q~knrw~~llkk 119 (313)
|..+|.+.| +.|.+|++.| +. - .+.+++.+|.++|.+
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 666666665 3699999987 22 1 256888888887764
No 134
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=30.37 E-value=18 Score=29.90 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=26.9
Q ss_pred cccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHH
Q 045400 43 SSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILT 85 (313)
Q Consensus 43 ~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~ 85 (313)
..||..+. |+|+.+||.-+. + ...+|+||++.|.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 46777887 999999998653 2 34699999988754
No 135
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=28.86 E-value=64 Score=24.99 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=23.8
Q ss_pred HhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 89 LLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 89 ~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
..|-...+||+.| |-|...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466789999999 89999999888765544
No 136
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=28.72 E-value=81 Score=18.99 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=27.5
Q ss_pred ccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHH
Q 045400 74 VFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYW 113 (313)
Q Consensus 74 ~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw 113 (313)
..++++-..++.++ .-|....+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666666665 4577789999999 88888877644
No 137
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.59 E-value=72 Score=25.22 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400 78 QEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121 (313)
Q Consensus 78 EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk~l 121 (313)
+-|.+|+.++...| -.+.+||+.+ |-+...|..+.+.+.+..+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45667888777766 4699999999 8899999999988766543
No 138
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=28.20 E-value=59 Score=25.06 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHH
Q 045400 76 NMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKN 111 (313)
Q Consensus 76 T~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~kn 111 (313)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667778888899999999999999 777766544
No 139
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.20 E-value=1.9e+02 Score=21.88 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCC------CccCcccCHHHHHHHHHHHHHhC-C
Q 045400 20 GLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRP------GLKRGVFNMQEEETILTLHRLLG-N 92 (313)
Q Consensus 20 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p------~lkk~~WT~EED~~Ll~lv~~~G-~ 92 (313)
...|.++-..++.++. -| ..-..||..++ .+...++ ||...... .......+++++..|+.+ ...+ -
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCC
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCC
Confidence 4578888888887774 45 44788988887 4443332 33332211 112235788888888887 3333 3
Q ss_pred chhhhcccCCC--CCHHHHHHHH
Q 045400 93 KWSQIAQHLPG--RTDNEIKNYW 113 (313)
Q Consensus 93 ~W~~Ia~~l~g--RT~~q~knrw 113 (313)
.-.+|+..| | -+...|....
T Consensus 79 s~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 79 TARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp CHHHHHHHT-TCCSCHHHHHHHH
T ss_pred CHHHHHHHH-CCCccHHHHHHHH
Confidence 346788877 4 5666666543
No 140
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=26.49 E-value=83 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 79 EEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 79 ED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
.+..++.+....|-...+||+.| |-|...|+.+....+++
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33444444444567799999999 99999998887665443
No 141
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=25.77 E-value=52 Score=25.93 Aligned_cols=29 Identities=28% Similarity=0.525 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCchhhhcccCCCCCHHHHHH
Q 045400 82 TILTLHRLLGNKWSQIAQHLPGRTDNEIKN 111 (313)
Q Consensus 82 ~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~kn 111 (313)
.|..++...|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 45566788899999999999 777666543
No 142
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.69 E-value=86 Score=23.07 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHH
Q 045400 77 MQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYW 113 (313)
Q Consensus 77 ~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw 113 (313)
.-|.+.|.+++..++...++.|+.| |-+...++.+-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477788889999998999999999 77777665543
No 143
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.24 E-value=1.2e+02 Score=22.85 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=34.8
Q ss_pred CcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHHH
Q 045400 72 RGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLKK 119 (313)
Q Consensus 72 k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llkk 119 (313)
....|+.|-+.|.. + ..|..-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45577777766644 3 3688899999999 88999999988876665
No 144
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=25.18 E-value=67 Score=21.92 Aligned_cols=36 Identities=14% Similarity=0.005 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHH
Q 045400 77 MQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYW 113 (313)
Q Consensus 77 ~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw 113 (313)
.-|.+.|.+++..++..+++.|+.| |=+...+..+-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rkl 53 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3467788889999999999999998 66666555443
No 145
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.75 E-value=62 Score=26.77 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHHH
Q 045400 77 MQEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 77 ~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk~ 120 (313)
.+-|.+|+.++...| -.+.+||+.+ |-+...|..|.+.+.+..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 355677888887776 4699999999 889999999998765543
No 146
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=24.70 E-value=49 Score=26.02 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=26.5
Q ss_pred CccCcccCHHHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHH
Q 045400 69 GLKRGVFNMQEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKN 111 (313)
Q Consensus 69 ~lkk~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~kn 111 (313)
.+-...=|.+ .|..++...|..|..+|+.| |=+..+|..
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3333344444 45566788899999999999 777766543
No 147
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=24.34 E-value=78 Score=24.50 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCchhhhcccCCCCCHHHHHHHHHHHHH
Q 045400 78 QEEETILTLHRLLGNKWSQIAQHLPGRTDNEIKNYWHSHLK 118 (313)
Q Consensus 78 EED~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~knrw~~llk 118 (313)
+.+..++.++...|..-.+||..+ |-|...|+.+....++
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344566667667788899999999 9999999988776554
No 148
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=23.47 E-value=2.2e+02 Score=22.52 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhcc------CCCcc----CcccCHHHHHHHHHHHHH
Q 045400 20 GLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL------RPGLK----RGVFNMQEEETILTLHRL 89 (313)
Q Consensus 20 g~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L------~p~lk----k~~WT~EED~~Ll~lv~~ 89 (313)
...|.|+-..++.++. -| .....||..++ .+... ..||...+ .+... ....++++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3688998888888874 45 45788998887 33333 23444332 22211 234788888888888766
Q ss_pred hC
Q 045400 90 LG 91 (313)
Q Consensus 90 ~G 91 (313)
.+
T Consensus 99 ~~ 100 (159)
T 2k27_A 99 NP 100 (159)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 149
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=23.30 E-value=69 Score=24.04 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCccc
Q 045400 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSV 45 (313)
Q Consensus 18 kkg~WT~EED~~L~~~V~kyg~~~W~~I 45 (313)
..+.|.++=+..|.+++..|.+....+|
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~ 32 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKI 32 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCC
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccce
Confidence 4688999999999999999975544444
No 150
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=22.64 E-value=86 Score=24.10 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCchhhhcccCCCCCHHHHHH
Q 045400 80 EETILTLHRLLGNKWSQIAQHLPGRTDNEIKN 111 (313)
Q Consensus 80 D~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~kn 111 (313)
+..|-.++...|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3455566677899999999999 766665543
No 151
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.45 E-value=20 Score=29.42 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC
Q 045400 25 EEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG 69 (313)
Q Consensus 25 EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~ 69 (313)
+-|.+|+.++.+.|...|.+||+.++ -+...|+.|+......+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 46888999999988888999999988 77778888776654433
No 152
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.36 E-value=86 Score=24.86 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhC-CchhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 045400 78 QEEETILTLHRLLG-NKWSQIAQHLPGRTDNEIKNYWHSHLKKKL 121 (313)
Q Consensus 78 EED~~Ll~lv~~~G-~~W~~Ia~~l~gRT~~q~knrw~~llkk~l 121 (313)
+-|.+|+.++...| -.+.+||+.+ |-+...|..|...+....+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34667788777766 4699999999 8899999999887655443
No 153
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.29 E-value=54 Score=25.72 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCchhhhcccCCCCCHHHHHH
Q 045400 80 EETILTLHRLLGNKWSQIAQHLPGRTDNEIKN 111 (313)
Q Consensus 80 D~~Ll~lv~~~G~~W~~Ia~~l~gRT~~q~kn 111 (313)
|..|..++...|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777788899999999999 777766544
No 154
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=21.76 E-value=1.6e+02 Score=22.86 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhc-----cCCCccCcc----cCHHHHHHHHHHH
Q 045400 17 HRKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINY-----LRPGLKRGV----FNMQEEETILTLH 87 (313)
Q Consensus 17 ~kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~-----L~p~lkk~~----WT~EED~~Ll~lv 87 (313)
......|.|+-..++.++ .-| .....||..++ .+...++.-...+ +.+....+. .++++.+.|++++
T Consensus 28 ~~~~~~s~e~r~~iv~~~-~~G-~s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 103 (149)
T 1k78_A 28 VNGRPLPDVVRQRIVELA-HQG-VRPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK 103 (149)
T ss_dssp CTTSCCCHHHHHHHHHHH-HTT-CCHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH-HcC-CCHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHH
Q ss_pred HHhC-CchhhhcccC---------CCCCHHHHHHHHHHHHHHH
Q 045400 88 RLLG-NKWSQIAQHL---------PGRTDNEIKNYWHSHLKKK 120 (313)
Q Consensus 88 ~~~G-~~W~~Ia~~l---------~gRT~~q~knrw~~llkk~ 120 (313)
.+.+ -.-.+|+..| ..-+...|....+..+...
T Consensus 104 ~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~~ 146 (149)
T 1k78_A 104 RQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQP 146 (149)
T ss_dssp HHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC----
T ss_pred HhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhcCC
No 155
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=21.15 E-value=2e+02 Score=28.09 Aligned_cols=59 Identities=14% Similarity=0.332 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhC
Q 045400 18 RKGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLG 91 (313)
Q Consensus 18 kkg~WT~EED~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G 91 (313)
...+||.|+-..|++...+|+.... | -.| +.+.--|.+| +.++++||-+.|.+|++.-.
T Consensus 10 YG~PWS~e~R~~l~~f~g~~kmNtY--i--YAP--KDDpyhr~~W---------Re~Yp~eel~~l~eLv~~a~ 68 (447)
T 2xsa_A 10 YGRDWRRDERATVMDWIAAAGMNTY--I--YGP--KDDVHVRARW---------RVPYDAAGLARLTELRDAAA 68 (447)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCEE--E--ECC--TTCTTTTTTT---------TSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceE--E--Ecc--CCChHHHHhh---------cccCCHHHHHHHHHHHHHHH
Confidence 3558999999999999999985421 1 123 5555555666 35777787777777776543
No 156
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=20.90 E-value=47 Score=26.15 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCCcccccccCCcCCccccchhhhhccCCC--ccCcccCHHHHHHHH--------HHHHHhCC
Q 045400 27 DQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYLRPG--LKRGVFNMQEEETIL--------TLHRLLGN 92 (313)
Q Consensus 27 D~~L~~~V~kyg~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~--lkk~~WT~EED~~Ll--------~lv~~~G~ 92 (313)
-++|+.++.++. .+-..|.+.+. ++......--.-.+.|. ....-|+..+|..|. +|+.+||.
T Consensus 14 ~~~i~~lMeef~-~DL~sVTqAlL--K~SGel~at~~fL~~~~r~dg~PiWsr~DD~~Lqk~D~~~R~qL~~KfG~ 86 (111)
T 3k6g_A 14 IKIIRQLMEKFN-LDLSTVTQAFL--KNSGELEATSAFLASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFGA 86 (111)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHH--HTTTCHHHHHHHHHHSSCTTSCCCCCHHHHHHHTCCCHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHH--HccccHHHHHHHHhCCCcCCCCcceeeccHHHHhcCCHHHHHHHHHHHhh
Confidence 467788888888 56777776666 44444433111233342 233569999999886 67777774
No 157
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=20.15 E-value=68 Score=25.18 Aligned_cols=65 Identities=8% Similarity=-0.043 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC--CcccccccCCcCCccccchhhhhccCCCccCcccCHHHHHHHHHHHHHhC
Q 045400 20 GLWSPEEDQRLKNYVLQHGHPC--WSSVPINAGLQRNGKSCRLRWINYLRPGLKRGVFNMQEEETILTLHRLLG 91 (313)
Q Consensus 20 g~WT~EED~~L~~~V~kyg~~~--W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk~~WT~EED~~Ll~lv~~~G 91 (313)
.++++++-..|++.+...+... ...|+..+| .+....|. |-|.+.+...+.||-+.++..+.+|-
T Consensus 45 sk~~~e~a~~l~e~L~~~~l~~~~~a~IanL~P--~~~dElra-----li~s~e~~~~~deeL~~IL~~l~ky~ 111 (113)
T 4ayb_F 45 EKCDAESAQKVVEELSSIISREDVRAVLASICP--ITPDEVRS-----ILIMDSNRTYTSEDIQKIIDIIRKYI 111 (113)
T ss_dssp CSSCHHHHHHHHHHHHTTCCCHHHHHHHHHHCC--CSSCCCCT-----TTTTTCCCCCCCTHHHHHHHHC----
T ss_pred cCCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCC--CCHHHHHH-----HHHhhccCCCCHHHHHHHHHHHHHHh
Confidence 4678988888888877765332 455666667 66655543 44556666789999999999988874
Done!