BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045402
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 121/263 (46%), Gaps = 29/263 (11%)
Query: 125 GGALDAKGTSLW--ACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQ 182
G L K S W A A N + I S N ++ + +NS +H+V +
Sbjct: 124 GVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGD 183
Query: 183 DVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISI----GRG-TNNLWIE 237
I + NTDGI S+N+ I S+I TGDD ++I GR T N+ I
Sbjct: 184 GFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISIL 243
Query: 238 RVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFI 297
G GHG+SIGS + GV NVTV GT NGLRIKS + + G V GVR+
Sbjct: 244 HNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKS-DKSAAGVVNGVRYS 297
Query: 298 DAVMQNVQNPIIIDQNY-CPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCS-AK 355
+ VM+NV PI+ID Y N P SDI + ++ TS T + N AK
Sbjct: 298 NVVMKNVAKPIVIDTVYEKKEGSNVPDW------SDITFKDV--TSETKGVVVLNGENAK 349
Query: 356 YPCEGIRLYKVNLSYLKLVAQSS 378
P E V + +KL + S+
Sbjct: 350 KPIE------VTMKNVKLTSDST 366
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 31/245 (12%)
Query: 88 DITFQIDGTLVAPADYRVLGQADNW----LSFEG----VSGVSIIGGALDAKGTSLWACK 139
D+T GT V G + W +SF G ++G S G ++D +G+ W K
Sbjct: 35 DMTGLKSGTTVTFQGKTTFGYKE-WEGPLISFSGTNININGAS--GHSIDCQGSRWWDSK 91
Query: 140 AA-AGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQ-----DVLVEGAKIIA 193
+ G T P S+ +SN IKGL LN+ + IN DV+++ +
Sbjct: 92 GSNGGKTKPKFFYAHSLKSSN---IKGLNVLNTPVQAFSINSATTLGVYDVIIDNS---- 144
Query: 194 AGDSP---NTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIG 250
AGDS NTD + S V I +++K DDC++I GT N+ TC GHG+SIG
Sbjct: 145 AGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTGGTCSGGHGLSIG 203
Query: 251 SLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNV-QNPII 309
S+G D V+ VT+ + + NG+RIK+ + G V GV + + N+ + I+
Sbjct: 204 SVGGRSDNT-VKTVTISNSKIVNSDNGVRIKT-VSGATGSVSGVTYSGITLSNIAKYGIV 261
Query: 310 IDQNY 314
I+Q+Y
Sbjct: 262 IEQDY 266
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 14/223 (6%)
Query: 125 GGALDAKGTSLWACKAA-AGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQD 183
G +D G+ W K G T P + I + + + KG+ N+ + I +
Sbjct: 77 GAVIDGDGSRWWDSKGTNGGKTKPK---FMYIHDVEDSTFKGINIKNTPVQAISVQATNV 133
Query: 184 VLVEGAKIIAAGDS---PNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVT 240
L + + GD NTDG I +S V I +++K DDCI+I G ++ T
Sbjct: 134 HLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGT 192
Query: 241 CGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAV 300
C GHG+SIGS+G D+ V+NVT+ + + + NG+RIK+ + + G V + + +
Sbjct: 193 CSGGHGLSIGSVGG-RDDNTVKNVTISDSTVSNSANGVRIKTIYKET-GDVSEITYSNIQ 250
Query: 301 MQNVQN-PIIIDQNYCPHNLNCPGQVS-GVKISDIIYWNIRGT 341
+ + + I+I+Q+Y N + G S G+ I+D+ + GT
Sbjct: 251 LSGITDYGIVIEQDY--ENGSPTGTPSTGIPITDVTVDGVTGT 291
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 141/342 (41%), Gaps = 30/342 (8%)
Query: 32 NVLRFGAKGNGVIDSTEXXXXXXXXXXXSNESTIIYVPKGRYLLGS-VAFKGECQSSDIT 90
N+L +GA + +ST+ ++Y+P G Y L + V G S
Sbjct: 22 NILSYGAVAD---NSTDVGPAITSAWAACKSGGLVYIPSGNYALNTWVTLTG---GSATA 75
Query: 91 FQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGA 150
Q+DG + YR + N ++ + + A GT GA
Sbjct: 76 IQLDGII-----YRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGT---YGA 127
Query: 151 TTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRN 210
L +T+ + S+ ++ +++ +H ++ C D V I G+ DGI + S N
Sbjct: 128 RILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMA-IRGGNEGGLDGIDVWGS-N 185
Query: 211 VKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTV 270
+ + + D+C+++ NN+ +E + C G ++GSLG D D + V++ V
Sbjct: 186 IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDI----VYRNV 241
Query: 271 FTGTQNGL-RIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVK 329
+T + N + IKS +G V V + + + ID Y G GV+
Sbjct: 242 YTWSSNQMYMIKS--NGGSGTVSNVLLENFIGHGNAYSLDID-GYWSSMTAVAGD--GVQ 296
Query: 330 ISDIIYWNIRGTS---STPIAIKFNCSAKYPCEGIRLYKVNL 368
+++I N +GT +T I+ CS PC + L + +
Sbjct: 297 LNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 113 LSFEGVSGVSIIGGALDAKGTSLWACKAA-AGTTCPNGATTLSITNSNNVSIKGLLSLNS 171
L+ G SG SI G G+ W + G T P S+TNS I GL +NS
Sbjct: 74 LTITGASGHSING-----DGSRWWDGEGGNGGKTKPKFFAAHSLTNS---VISGLKIVNS 125
Query: 172 --QMYHIVIN---RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCIS 226
Q++ + + +D+ ++ + G NTD I S V I +++ DDC++
Sbjct: 126 PVQVFSVAGSDYLTLKDITIDNSDGDDNG-GHNTDAFDIGTSTYVTISGATVYNQDDCVA 184
Query: 227 IGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARP 286
+ G N++ C GHG+SIGS+G D V+NVT + + NG+RIK+
Sbjct: 185 VNSG-ENIYFSGGYCSGGHGLSIGSVGGRSDNT-VKNVTFVDSTIINSDNGVRIKT-NID 241
Query: 287 SNGFVKGVRFIDAVMQNV-QNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGT 341
+ G V V + D + ++ + I++ QNY + + P +GV I+D + N+ G+
Sbjct: 242 TTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTS-STP--TTGVPITDFVLDNVHGS 294
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 18/213 (8%)
Query: 153 LSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVK 212
IT S+ ++I GL I+ NR D AK + + NTDG I S +V
Sbjct: 130 FDITGSSQLTISGL---------ILDNRAGDK--PNAKSGSLPAAHNTDGFDISSSDHVT 178
Query: 213 IRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFT 272
+ ++ + DDC+++ GT N+ + + C GHG+SIGS+G D V V +
Sbjct: 179 LDNNHVYNQDDCVAVTSGT-NIVVSNMYCSGGHGLSIGSVGGKSDNV-VDGVQFLSSQVV 236
Query: 273 GTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQN-PIIIDQNYCPHNLNCPGQ-VSGVKI 330
+QNG RIKS + + G + V + + + N+ + + Q+Y N G+ +GVKI
Sbjct: 237 NSQNGCRIKSNSGAT-GTINNVTYQNIALTNISTYGVDVQQDYL--NGGPTGKPTNGVKI 293
Query: 331 SDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRL 363
S+I + + GT ++ F C G
Sbjct: 294 SNIKFIKVTGTVASSAQDWFILCGDGSCSGFTF 326
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 14/208 (6%)
Query: 113 LSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCP-----NGATTLSITNSNNVSIKGLL 167
+S E ++ G ++ G W K +G P +G + SIT N + L+
Sbjct: 92 MSGEHITVTGASGHLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLN-IKNTPLM 150
Query: 168 SLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISI 227
+ + Q I DV + A G NTD + S V I + DDC+++
Sbjct: 151 AFSVQANDITFT---DVTINNADGDTQG-GHNTDAFDVGNSVGVNIIKPWVHNQDDCLAV 206
Query: 228 GRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPS 287
G N+W TC GHG+SIGS+G D V+NVT+ + + ++N +RIK+ +
Sbjct: 207 NSG-ENIWFTGGTCIGGHGLSIGSVG-DRSNNVVKNVTIEHSTVSNSENAVRIKT-ISGA 263
Query: 288 NGFVKGVRFIDAVMQNVQN-PIIIDQNY 314
G V + + + VM + + ++I Q+Y
Sbjct: 264 TGSVSEITYSNIVMSGISDYGVVIQQDY 291
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 19/166 (11%)
Query: 194 AGDSPN----TDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISI 249
AGD+ N TDG + + NV I++ +K DDCI+I G NN+ E C GHGISI
Sbjct: 142 AGDTKNLGHNTDGFDVS-ANNVTIQNCIVKNQDDCIAINDG-NNIRFENNQCSGGHGISI 199
Query: 250 GSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNV-QNPI 308
GS+ + V NV + T + G+RIK+ ++ V GV + + + + +
Sbjct: 200 GSIAT---GKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGV 256
Query: 309 IIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSA 354
+I Q+Y P ++ PG +G SD+ N G ++T IK N +A
Sbjct: 257 LISQSY-PDDVGNPG--TGAPFSDV---NFTGGATT---IKVNNAA 293
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 136/362 (37%), Gaps = 88/362 (24%)
Query: 17 VSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEXXXXXXXXXXXSNESTIIYVPKGRYLLG 76
+ N++ N+L FGA+G+G D +E +I VP+G +L G
Sbjct: 14 ILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLI-VPEGVFLTG 72
Query: 77 SVAFKGECQSSDITFQIDGTL-VAPADYRVLGQADNWLSFEGV----------------- 118
+ K S+I + GT+ P R L FEG+
Sbjct: 73 PIHLK-----SNIELHVKGTIKFIPDPERYLPVV--LTRFEGIELYNYSPLVYALDCENV 125
Query: 119 --SGVSIIGGALDAKGTSLWACKAAAG--TTCPNGATTLSITNSNNVSIKGLLSLNSQMY 174
+G ++ G+ D + W K G PN + ++ +G + +++
Sbjct: 126 AITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQE--DVKKLKEMAERGT-PVEERVF 182
Query: 175 ---------HIVINRCQDVLVEGAKII---------------------AAGDSPNTDGIH 204
+ RC++VLVEG KII + PN DGI
Sbjct: 183 GKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGID 242
Query: 205 IQQSRNVKIRSSSIKTGDDCISIGRG-----------------TNNLWIERVTCGPGHGI 247
+ + + I TGDD + I G +NL I + + G G+
Sbjct: 243 PESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHG---GL 299
Query: 248 SIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNP 307
IGS +M GV+NV V+ + LR+K+ +R G+++ + FID V NV
Sbjct: 300 VIGS---EMS-GGVRNVVARNNVYMNVERALRLKTNSR-RGGYMENIFFIDNVAVNVSEE 354
Query: 308 II 309
+I
Sbjct: 355 VI 356
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 17/172 (9%)
Query: 150 ATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSR 209
++ +++ NV + G ++ + +H ++N +V I D+ N DGI S+
Sbjct: 331 SSLMTLRGVENVYLAGF-TVRNPAFHGIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQ 389
Query: 210 NVKIRSSSIKTGDDCISIGRGTNN----------LWIERVTCGPGHG-ISIGSLGKDMDE 258
NV + ++ TGDDCI+ GT W+ GHG I GS
Sbjct: 390 NVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGS----HTG 445
Query: 259 EGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIII 310
++++ V T GLR KS + G + V F + M+++ +++
Sbjct: 446 AWIEDILAENNVMYLTDIGLRAKSTSTIGGG-ARNVTFRNNAMRDLAKQVMV 496
>pdb|4GMS|H Chain H, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|I Chain I, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMS|J Chain J, Crystal Structure Of Heterosubtypic Fab S1391 IN COMPLEX
WITH Influenza A H3 Hemagglutinin
pdb|4GMT|H Chain H, Crystal Structure Of Heterosubtypic Fab S1391
pdb|4GMT|I Chain I, Crystal Structure Of Heterosubtypic Fab S1391
Length = 225
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 203 IHIQQS-RNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGV 261
+ +QQS +K +S+K C + G ++ WIE + PGHG+ +G+ + E G+
Sbjct: 2 VQLQQSGTELKKPGASVKI--SCKATGYTFSSYWIEWIKQRPGHGLEW--IGEILPEIGM 57
Query: 262 QN 263
N
Sbjct: 58 TN 59
>pdb|1F9O|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum With The Thiooligosaccharide Inhibitor
Pips- Ig3
pdb|1FAE|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiose
pdb|1FBO|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiitol
pdb|1G9G|A Chain A, Xtal-Structure Of The Free Native Cellulase Cel48f
pdb|1FCE|A Chain A, Processive Endocellulase Celf Of Clostridium
Cellulolyticum
Length = 629
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 88 DITFQIDGTLVAPADYRVLGQADNWLSFEGVSG-----VSIIGGALD-------AKGTSL 135
+I F DGT P+ GQ D W +G +G V ++ D A +
Sbjct: 448 EIKFNADGTFQIPSTIDWEGQPDTWNPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTY 507
Query: 136 WACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQ-MYHIVINRCQDVLVEGAKIIAA 194
+A K+ T+ N L +N KG+ ++ + YH ++ Q+V V
Sbjct: 508 YAAKSGDETSRQNAQKLLDAMWNNYSDSKGISTVEQRGDYHRFLD--QEVFVPAG---WT 562
Query: 195 GDSPNTDGI 203
G PN D I
Sbjct: 563 GKMPNGDVI 571
>pdb|1G9J|A Chain A, X-Tal Structure Of The Mutant E44q Of The Cellulase Cel48f
In Complex With A Thiooligosaccharide
Length = 629
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 88 DITFQIDGTLVAPADYRVLGQADNWLSFEGVSG-----VSIIGGALD-------AKGTSL 135
+I F DGT P+ GQ D W +G +G V ++ D A +
Sbjct: 448 EIKFNADGTFQIPSTIDWEGQPDTWNPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTY 507
Query: 136 WACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQ-MYHIVINRCQDVLVEGAKIIAA 194
+A K+ T+ N L +N KG+ ++ + YH ++ Q+V V
Sbjct: 508 YAAKSGDETSRQNAQKLLDAMWNNYSDSKGISTVEQRGDYHRFLD--QEVFVPAG---WT 562
Query: 195 GDSPNTDGI 203
G PN D I
Sbjct: 563 GKMPNGDVI 571
>pdb|1F9D|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellotetraose
pdb|1FBW|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellohexaose
pdb|2QNO|A Chain A, Crystal Structure Of The Mutant E55q Of The Cellulase
Cel48f In Complex With A Thio-Oligosaccharide
Length = 629
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 88 DITFQIDGTLVAPADYRVLGQADNWLSFEGVSG-----VSIIGGALD-------AKGTSL 135
+I F DGT P+ GQ D W +G +G V ++ D A +
Sbjct: 448 EIKFNADGTFQIPSTIDWEGQPDTWNPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTY 507
Query: 136 WACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQ-MYHIVINRCQDVLVEGAKIIAA 194
+A K+ T+ N L +N KG+ ++ + YH ++ Q+V V
Sbjct: 508 YAAKSGDETSRQNAQKLLDAMWNNYSDSKGISTVEQRGDYHRFLD--QEVFVPAG---WT 562
Query: 195 GDSPNTDGI 203
G PN D I
Sbjct: 563 GKMPNGDVI 571
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 196 DSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGS--LG 253
++P+ DG ++ +R S TG + N W HG+++GS
Sbjct: 270 NAPSIDGDRTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKS-------HGMNLGSNWAY 322
Query: 254 KDMDEEGVQ-----NVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRF 296
+ M EG Q NVTVW +VF ++ +W + ++G+ G F
Sbjct: 323 QVMATEGYQSSGSSNVTVWGSVFWEPKSYFNPSTWEK-ADGYSNGGVF 369
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 123 IIGGALDAKGTSLWACKAAAGTTCPNGATTLS----ITNSNNVSI 163
I+GG+LDAKG+ W K + +GAT ++ +T + N+ +
Sbjct: 103 IMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRL 147
>pdb|4FIU|A Chain A, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|B Chain B, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|C Chain C, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
Length = 515
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 157 NSNNVSIKGLLSLNSQMYHIVINRCQDVLVE----GAKIIAAGDSPNTDGIHIQQSRNVK 212
N N SI+G + + +++ +R D + + AK++ ++ T +H RN+
Sbjct: 394 NGNYDSIRGEFNQVEKRINMIADRVDDAVTDIWSYNAKLLVLIENDRTLDLHDANVRNLH 453
Query: 213 ------IRSSSIKTGDDCISIGRGTNNLWIERVTCG 242
++ ++I GD C SI N+ +E + G
Sbjct: 454 EQIKRALKDNAIDEGDGCFSILHKCNDSCMETIRNG 489
>pdb|4F23|A Chain A, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|B Chain B, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|C Chain C, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
Length = 515
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 157 NSNNVSIKGLLSLNSQMYHIVINRCQDVLVE----GAKIIAAGDSPNTDGIHIQQSRNVK 212
N N SI+G + + +++ +R D + + AK++ ++ T +H RN+
Sbjct: 394 NGNYDSIRGEFNQVEKRINMIADRVDDAVTDIWSYNAKLLVLIENDRTLDLHDANVRNLH 453
Query: 213 ------IRSSSIKTGDDCISIGRGTNNLWIERVTCG 242
++ ++I GD C SI N+ +E + G
Sbjct: 454 EQIKRALKDNAIDEGDGCFSILHKCNDSCMETIRNG 489
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,364,861
Number of Sequences: 62578
Number of extensions: 475084
Number of successful extensions: 977
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 22
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)