Query 045402
Match_columns 396
No_of_seqs 207 out of 1683
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 12:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 1.5E-77 3.3E-82 580.3 45.0 371 24-396 21-392 (394)
2 PLN02793 Probable polygalactur 100.0 5E-76 1.1E-80 578.5 48.0 368 27-396 49-423 (443)
3 PLN02218 polygalacturonase ADP 100.0 6.1E-74 1.3E-78 561.2 45.7 363 25-395 62-430 (431)
4 PLN03010 polygalacturonase 100.0 3.2E-73 6.9E-78 551.2 46.5 355 27-396 43-403 (409)
5 PLN03003 Probable polygalactur 100.0 4.7E-74 1E-78 559.7 40.5 363 25-396 18-389 (456)
6 PLN02188 polygalacturonase/gly 100.0 1.1E-73 2.4E-78 555.8 42.6 367 25-396 31-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 8E-57 1.7E-61 431.6 32.9 323 58-386 1-324 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.6E-41 3.5E-46 335.6 27.4 275 25-311 77-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 1.8E-25 3.9E-30 214.7 23.1 246 26-303 33-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 2E-21 4.4E-26 177.1 20.7 213 30-278 1-224 (225)
11 PLN02793 Probable polygalactur 99.9 1.1E-19 2.4E-24 179.6 28.2 217 88-343 144-397 (443)
12 PLN02188 polygalacturonase/gly 99.9 5.7E-19 1.2E-23 172.6 29.0 220 88-343 123-377 (404)
13 PLN02155 polygalacturonase 99.8 1.4E-18 3E-23 169.2 27.5 219 88-344 116-367 (394)
14 PLN02218 polygalacturonase ADP 99.8 1.1E-18 2.5E-23 171.6 27.0 217 88-342 157-410 (431)
15 PF00295 Glyco_hydro_28: Glyco 99.8 8E-19 1.7E-23 168.7 25.5 217 88-342 61-310 (326)
16 PLN03003 Probable polygalactur 99.8 1.7E-18 3.7E-23 170.0 26.5 218 88-343 114-360 (456)
17 PLN03010 polygalacturonase 99.8 8.8E-18 1.9E-22 164.0 27.8 214 88-343 140-377 (409)
18 PF03718 Glyco_hydro_49: Glyco 99.8 4.4E-17 9.5E-22 158.4 27.9 273 63-369 232-552 (582)
19 TIGR03805 beta_helix_1 paralle 99.7 3.8E-15 8.3E-20 142.1 27.1 226 50-311 1-250 (314)
20 TIGR03805 beta_helix_1 paralle 99.3 2.3E-10 5E-15 109.3 22.5 163 118-304 31-203 (314)
21 COG5434 PGU1 Endopygalactoruna 99.3 4.6E-11 1E-15 119.5 17.5 154 172-343 237-398 (542)
22 PRK10123 wcaM putative colanic 99.3 9.8E-11 2.1E-15 105.9 17.6 246 8-302 12-283 (464)
23 COG3866 PelB Pectate lyase [Ca 99.2 9.6E-10 2.1E-14 100.3 17.6 162 61-274 52-229 (345)
24 PF12541 DUF3737: Protein of u 99.0 1.5E-08 3.2E-13 91.2 14.6 93 180-306 135-227 (277)
25 PF13229 Beta_helix: Right han 98.7 1.3E-07 2.7E-12 80.7 11.8 140 152-311 2-145 (158)
26 TIGR03808 RR_plus_rpt_1 twin-a 98.7 3.7E-07 8.1E-12 89.0 14.6 145 152-310 108-290 (455)
27 PF12541 DUF3737: Protein of u 98.7 7.7E-07 1.7E-11 80.3 14.8 136 115-278 94-229 (277)
28 COG3420 NosD Nitrous oxidase a 98.6 3.8E-05 8.2E-10 71.6 22.9 121 110-243 69-192 (408)
29 PF13229 Beta_helix: Right han 98.5 1.8E-06 4E-11 73.4 12.8 140 113-282 3-146 (158)
30 PF05048 NosD: Periplasmic cop 98.5 5.6E-06 1.2E-10 76.1 16.4 113 152-280 37-151 (236)
31 smart00656 Amb_all Amb_all dom 98.5 5.5E-06 1.2E-10 73.5 15.4 99 175-274 33-144 (190)
32 PF14592 Chondroitinas_B: Chon 98.5 1.9E-05 4.2E-10 77.0 19.9 33 46-81 3-35 (425)
33 PF07602 DUF1565: Protein of u 98.5 8.9E-06 1.9E-10 74.3 16.4 169 47-282 15-196 (246)
34 PF05048 NosD: Periplasmic cop 98.5 5.1E-06 1.1E-10 76.4 15.0 135 152-310 15-151 (236)
35 PF03718 Glyco_hydro_49: Glyco 98.4 6E-06 1.3E-10 81.6 15.1 173 175-369 322-513 (582)
36 PLN02176 putative pectinestera 98.3 0.00034 7.4E-09 67.0 24.2 47 46-95 50-97 (340)
37 PLN02634 probable pectinestera 98.3 0.00026 5.6E-09 68.1 22.8 51 41-95 63-114 (359)
38 PLN02480 Probable pectinestera 98.3 0.0004 8.6E-09 66.8 23.9 197 45-304 58-277 (343)
39 PLN02497 probable pectinestera 98.3 0.00027 5.9E-09 67.5 22.6 47 46-95 43-90 (331)
40 PLN02773 pectinesterase 98.3 0.00016 3.5E-09 68.7 20.9 47 46-95 16-63 (317)
41 smart00656 Amb_all Amb_all dom 98.3 5.2E-05 1.1E-09 67.3 15.6 134 152-303 33-188 (190)
42 PLN02682 pectinesterase family 98.3 0.00032 7E-09 67.8 22.1 48 45-95 80-128 (369)
43 PLN02170 probable pectinestera 98.2 0.00039 8.4E-09 70.2 22.5 207 41-303 232-451 (529)
44 PF00544 Pec_lyase_C: Pectate 98.2 6.2E-06 1.3E-10 73.8 8.6 76 198-274 73-158 (200)
45 PRK10531 acyl-CoA thioesterase 98.2 0.0004 8.6E-09 68.1 21.7 53 39-95 87-141 (422)
46 PLN02665 pectinesterase family 98.1 0.0014 3.1E-08 63.5 22.7 47 46-95 79-126 (366)
47 PLN02484 probable pectinestera 98.1 0.00054 1.2E-08 70.6 20.6 209 46-304 283-509 (587)
48 COG3866 PelB Pectate lyase [Ca 98.1 0.0012 2.7E-08 61.0 20.4 133 159-309 125-281 (345)
49 PLN02916 pectinesterase family 98.0 0.00077 1.7E-08 67.7 20.0 148 46-242 198-356 (502)
50 PLN02708 Probable pectinestera 98.0 0.00071 1.5E-08 69.3 19.7 47 46-95 252-300 (553)
51 PLN02933 Probable pectinestera 98.0 0.0011 2.4E-08 67.2 20.2 148 46-242 229-384 (530)
52 PLN02506 putative pectinestera 97.9 0.0012 2.6E-08 67.3 19.9 203 46-303 243-458 (537)
53 PLN02713 Probable pectinestera 97.9 0.001 2.2E-08 68.3 19.6 178 46-274 261-455 (566)
54 PLN03043 Probable pectinestera 97.9 0.0016 3.4E-08 66.6 20.6 181 41-274 230-428 (538)
55 PLN02201 probable pectinestera 97.9 0.0018 3.8E-08 65.7 20.5 152 41-242 213-372 (520)
56 PF01095 Pectinesterase: Pecti 97.9 0.0011 2.3E-08 63.1 17.5 48 45-95 10-58 (298)
57 PLN02416 probable pectinestera 97.9 0.0022 4.8E-08 65.5 20.6 47 46-95 241-288 (541)
58 PLN02990 Probable pectinestera 97.9 0.0016 3.5E-08 66.9 19.6 182 41-274 266-462 (572)
59 PF12708 Pectate_lyase_3: Pect 97.8 0.0013 2.8E-08 59.4 17.0 123 161-308 94-224 (225)
60 PLN02671 pectinesterase 97.8 0.0051 1.1E-07 59.4 21.4 51 41-95 66-117 (359)
61 PLN02995 Probable pectinestera 97.8 0.0022 4.8E-08 65.5 19.9 184 41-274 230-427 (539)
62 PLN02745 Putative pectinestera 97.8 0.0029 6.4E-08 65.3 20.5 175 46-274 296-487 (596)
63 PLN02313 Pectinesterase/pectin 97.8 0.0025 5.5E-08 65.8 19.8 179 46-274 286-477 (587)
64 PLN02301 pectinesterase/pectin 97.8 0.0028 6E-08 64.8 19.8 177 46-274 247-438 (548)
65 PLN02304 probable pectinestera 97.8 0.006 1.3E-07 59.2 21.1 51 41-95 82-133 (379)
66 PLN02217 probable pectinestera 97.8 0.0024 5.2E-08 66.5 19.4 203 46-304 261-486 (670)
67 PLN02488 probable pectinestera 97.8 0.0057 1.2E-07 61.4 21.2 48 45-95 207-255 (509)
68 PLN02432 putative pectinestera 97.7 0.0046 1E-07 58.2 19.2 47 46-95 22-69 (293)
69 PF00544 Pec_lyase_C: Pectate 97.7 0.00095 2.1E-08 59.7 13.1 116 156-281 43-188 (200)
70 PLN02468 putative pectinestera 97.7 0.0049 1.1E-07 63.4 19.8 204 46-304 269-490 (565)
71 PLN02197 pectinesterase 97.6 0.0081 1.8E-07 61.9 20.4 211 46-304 286-514 (588)
72 PLN02314 pectinesterase 97.6 0.0041 8.8E-08 64.3 18.0 205 46-304 289-509 (586)
73 PF12218 End_N_terminal: N ter 97.2 0.00049 1.1E-08 47.7 3.9 39 38-79 1-39 (67)
74 PF01696 Adeno_E1B_55K: Adenov 97.2 0.059 1.3E-06 52.3 19.4 108 156-281 118-227 (386)
75 COG3420 NosD Nitrous oxidase a 97.0 0.014 3E-07 54.9 12.9 86 150-242 150-235 (408)
76 COG4677 PemB Pectin methyleste 96.7 0.12 2.6E-06 48.5 16.0 48 45-95 92-141 (405)
77 PF03211 Pectate_lyase: Pectat 96.4 0.13 2.8E-06 46.1 13.9 128 183-337 62-194 (215)
78 PF03211 Pectate_lyase: Pectat 95.8 1.3 2.8E-05 39.7 17.0 133 158-298 60-194 (215)
79 PLN02480 Probable pectinestera 95.3 1.1 2.5E-05 43.2 16.4 113 178-304 128-252 (343)
80 TIGR03804 para_beta_helix para 94.6 0.052 1.1E-06 35.6 3.6 39 202-241 1-39 (44)
81 PLN02698 Probable pectinestera 93.6 1.4 3E-05 45.0 13.2 42 208-251 297-338 (497)
82 TIGR03804 para_beta_helix para 93.4 0.14 3E-06 33.5 3.9 41 175-220 1-41 (44)
83 PF01696 Adeno_E1B_55K: Adenov 93.0 5.5 0.00012 38.9 15.6 86 178-278 117-204 (386)
84 PLN02773 pectinesterase 89.9 13 0.00029 35.6 14.5 40 154-193 97-141 (317)
85 PF07602 DUF1565: Protein of u 88.7 12 0.00025 34.6 12.7 133 176-341 91-225 (246)
86 PRK10123 wcaM putative colanic 88.3 2.5 5.3E-05 39.4 7.9 93 203-303 262-373 (464)
87 PF14592 Chondroitinas_B: Chon 87.5 15 0.00033 36.5 13.4 86 209-309 199-293 (425)
88 PF08480 Disaggr_assoc: Disagg 86.8 19 0.00042 31.4 12.0 93 208-305 33-144 (198)
89 PLN02665 pectinesterase family 86.8 24 0.00052 34.6 14.3 136 153-303 148-297 (366)
90 PF09251 PhageP22-tail: Salmon 85.5 9.6 0.00021 37.5 10.6 68 208-282 263-354 (549)
91 PF08480 Disaggr_assoc: Disagg 85.1 6.3 0.00014 34.3 8.2 16 260-275 62-77 (198)
92 PRK10531 acyl-CoA thioesterase 82.2 50 0.0011 32.9 14.3 84 180-273 204-302 (422)
93 PLN02217 probable pectinestera 79.9 41 0.0009 35.7 13.5 115 179-305 334-453 (670)
94 PF01095 Pectinesterase: Pecti 79.5 58 0.0013 31.0 14.7 135 155-304 83-236 (298)
95 PLN02197 pectinesterase 79.4 41 0.00089 35.2 13.2 116 178-305 360-481 (588)
96 PLN02468 putative pectinestera 78.7 46 0.00099 34.7 13.4 116 178-305 341-461 (565)
97 PLN02708 Probable pectinestera 78.0 77 0.0017 33.0 14.7 78 156-242 327-409 (553)
98 PLN02698 Probable pectinestera 77.9 69 0.0015 32.9 14.2 141 155-305 266-420 (497)
99 PLN02745 Putative pectinestera 76.5 70 0.0015 33.6 14.0 116 178-305 368-488 (596)
100 PLN02170 probable pectinestera 74.3 1.1E+02 0.0024 31.5 14.7 117 177-305 308-428 (529)
101 PLN02995 Probable pectinestera 74.1 82 0.0018 32.7 13.7 116 178-305 308-428 (539)
102 PLN02933 Probable pectinestera 73.3 93 0.002 32.1 13.7 116 177-304 300-420 (530)
103 PLN02506 putative pectinestera 72.2 82 0.0018 32.6 13.1 116 177-304 314-434 (537)
104 PF09251 PhageP22-tail: Salmon 69.5 1.2E+02 0.0027 30.1 14.9 68 232-302 264-348 (549)
105 PLN02201 probable pectinestera 69.4 1.4E+02 0.0031 30.8 14.0 116 177-304 288-408 (520)
106 PLN02916 pectinesterase family 69.3 1.4E+02 0.0031 30.6 14.3 117 177-305 272-393 (502)
107 PLN02301 pectinesterase/pectin 69.3 1.1E+02 0.0024 31.8 13.3 116 178-305 319-439 (548)
108 PLN02314 pectinesterase 69.1 1.1E+02 0.0023 32.2 13.4 117 177-305 360-481 (586)
109 PLN02416 probable pectinestera 68.2 1.2E+02 0.0025 31.6 13.2 78 156-242 314-396 (541)
110 PLN02682 pectinesterase family 67.6 1.3E+02 0.0028 29.6 13.6 134 153-304 157-305 (369)
111 PLN02713 Probable pectinestera 67.6 1.2E+02 0.0026 31.7 13.3 115 178-304 336-455 (566)
112 PLN02484 probable pectinestera 63.9 1.9E+02 0.0042 30.4 14.0 117 177-305 355-476 (587)
113 PLN02176 putative pectinestera 63.7 1.5E+02 0.0032 28.8 13.5 77 157-242 120-207 (340)
114 PF13956 Ibs_toxin: Toxin Ibs, 63.6 3.8 8.3E-05 21.2 0.8 13 1-13 1-13 (19)
115 PLN02990 Probable pectinestera 63.1 2E+02 0.0043 30.1 14.2 115 179-305 344-463 (572)
116 PLN02313 Pectinesterase/pectin 62.0 1.7E+02 0.0036 30.8 13.1 116 178-305 358-478 (587)
117 PLN02304 probable pectinestera 60.1 1.8E+02 0.0039 28.7 14.3 16 156-171 159-174 (379)
118 PLN02671 pectinesterase 59.3 1.8E+02 0.004 28.4 12.7 80 154-242 149-237 (359)
119 PLN03043 Probable pectinestera 59.1 2.3E+02 0.0049 29.5 14.2 116 177-304 308-428 (538)
120 smart00722 CASH Domain present 58.5 96 0.0021 24.9 11.3 68 156-226 73-144 (146)
121 PLN02488 probable pectinestera 57.9 2.3E+02 0.005 29.1 13.9 78 156-242 281-363 (509)
122 PLN02497 probable pectinestera 53.4 2.2E+02 0.0048 27.6 13.2 78 156-242 112-201 (331)
123 PLN02432 putative pectinestera 53.1 2.1E+02 0.0045 27.2 12.7 38 156-193 91-132 (293)
124 smart00710 PbH1 Parallel beta- 51.1 20 0.00044 19.2 2.6 11 210-220 3-13 (26)
125 PRK09973 putative outer membra 49.4 2.3 5.1E-05 32.1 -2.0 23 1-23 1-23 (85)
126 PF02402 Lysis_col: Lysis prot 48.6 6 0.00013 25.7 0.1 13 1-13 1-13 (46)
127 COG4531 ZnuA ABC-type Zn2+ tra 46.6 31 0.00068 32.1 4.3 59 3-77 5-67 (318)
128 PF10913 DUF2706: Protein of u 46.5 30 0.00065 23.3 3.1 27 1-27 1-27 (60)
129 TIGR00247 conserved hypothetic 41.7 60 0.0013 31.5 5.8 11 67-77 81-91 (342)
130 PF10855 DUF2648: Protein of u 41.5 12 0.00026 22.5 0.6 16 1-16 1-16 (33)
131 PF10162 G8: G8 domain; Inter 41.4 69 0.0015 26.1 5.3 53 62-128 11-64 (125)
132 COG5567 Predicted small peripl 38.7 31 0.00068 23.7 2.3 19 1-19 1-19 (58)
133 PRK02710 plastocyanin; Provisi 37.0 43 0.00093 27.0 3.4 9 64-72 47-55 (119)
134 PRK10081 entericidin B membran 35.8 33 0.00073 22.9 2.1 7 1-7 2-8 (48)
135 PLN02634 probable pectinestera 35.4 4.4E+02 0.0095 25.8 11.7 131 156-303 146-290 (359)
136 PF05342 Peptidase_M26_N: M26 34.4 86 0.0019 28.9 5.2 9 69-77 154-162 (250)
137 PF05984 Cytomega_UL20A: Cytom 34.4 66 0.0014 24.1 3.6 34 1-35 1-34 (100)
138 PRK10802 peptidoglycan-associa 33.6 94 0.002 26.9 5.2 14 63-76 68-81 (173)
139 PF12276 DUF3617: Protein of u 33.3 49 0.0011 28.0 3.4 15 1-15 1-15 (162)
140 COG5510 Predicted small secret 31.6 44 0.00095 21.8 2.0 20 1-20 2-22 (44)
141 TIGR03656 IsdC heme uptake pro 29.3 1.4E+02 0.0031 26.9 5.6 67 1-75 1-70 (217)
142 PRK15346 outer membrane secret 28.6 1.2E+02 0.0026 31.2 5.8 6 1-6 1-6 (499)
143 PF14262 DUF4353: Domain of un 27.6 5.1E+02 0.011 24.2 14.9 141 62-228 5-164 (264)
144 TIGR01098 3A0109s03R phosphate 27.0 1E+02 0.0022 27.9 4.6 20 1-20 1-20 (254)
145 COG4764 Uncharacterized protei 25.5 47 0.001 28.2 1.8 33 1-33 1-33 (197)
146 PRK13697 cytochrome c6; Provis 25.4 72 0.0016 25.0 2.9 12 1-12 1-12 (111)
147 COG0687 PotD Spermidine/putres 25.2 1.3E+02 0.0029 29.2 5.3 30 22-57 25-54 (363)
148 PRK09810 entericidin A; Provis 24.4 73 0.0016 20.6 2.1 6 1-6 2-7 (41)
149 COG1030 NfeD Membrane-bound se 23.7 2.5E+02 0.0053 28.2 6.6 29 26-57 24-52 (436)
150 COG3495 Uncharacterized protei 23.6 58 0.0013 27.1 1.9 17 1-17 1-17 (166)
151 PRK15240 resistance to complem 23.6 57 0.0012 28.7 2.1 11 1-11 1-11 (185)
152 PF02741 FTR_C: FTR, proximal 22.8 53 0.0011 27.5 1.6 36 41-78 104-143 (150)
153 COG2247 LytB Putative cell wal 22.8 1E+02 0.0022 29.5 3.7 87 1-103 1-92 (337)
154 PRK03577 acid shock protein pr 22.4 87 0.0019 24.2 2.5 13 1-13 1-13 (102)
155 PRK15209 long polar fimbrial p 22.1 1.1E+02 0.0024 26.3 3.6 10 1-10 1-10 (174)
156 smart00722 CASH Domain present 21.7 4.1E+02 0.0089 21.0 8.5 12 159-170 45-56 (146)
157 TIGR02001 gcw_chp conserved hy 21.6 49 0.0011 30.5 1.3 22 34-55 42-63 (243)
158 PF07437 YfaZ: YfaZ precursor; 21.6 75 0.0016 27.8 2.4 13 1-13 1-13 (180)
159 CHL00132 psaF photosystem I su 21.5 1.4E+02 0.003 26.0 3.8 12 1-13 1-12 (185)
160 PF11106 YjbE: Exopolysacchari 20.8 82 0.0018 23.2 2.0 15 1-15 1-15 (80)
161 PRK11443 lipoprotein; Provisio 20.7 80 0.0017 25.8 2.2 11 1-11 1-11 (124)
162 PF05968 Bacillus_PapR: Bacill 20.5 1E+02 0.0023 20.2 2.2 12 1-12 1-12 (48)
163 COG3017 LolB Outer membrane li 20.4 1E+02 0.0022 27.5 2.9 21 1-21 3-23 (206)
164 PRK15396 murein lipoprotein; P 20.4 14 0.0003 27.5 -2.0 23 1-23 1-24 (78)
165 TIGR01655 yxeA_fam conserved h 20.3 1.3E+02 0.0028 24.1 3.4 14 28-41 32-45 (114)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.5e-77 Score=580.31 Aligned_cols=371 Identities=51% Similarity=0.972 Sum_probs=339.3
Q ss_pred CCCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccc
Q 045402 24 SAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADY 103 (396)
Q Consensus 24 ~~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~ 103 (396)
+..+++.+||+||||++||++|||+|||+|++++|++.+|++|+||+|+|++++|.|.++||| +++|+++|+|+++.++
T Consensus 21 ~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d~ 99 (394)
T PLN02155 21 SSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGTVVAPEDY 99 (394)
T ss_pred cccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeEEECcccc
Confidence 345567999999999999999999999999987899889999999999999999999998889 9999999999999888
Q ss_pred cccCCCcceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEeceec
Q 045402 104 RVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQD 183 (396)
Q Consensus 104 ~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~n 183 (396)
..|.....|+.+.+.+|+.|+||+|||+|+.||.....+ ...+.+|+++.|.+|+|++|++++++++|.|++++..|+|
T Consensus 100 ~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~-~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~n 178 (394)
T PLN02155 100 RTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSG-QNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTN 178 (394)
T ss_pred ccccccceeEEEECcCCCEEEccEEecCceeEEEcccCC-CCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeee
Confidence 888655679999999999999999999999999864432 3445578899999999999999999999999999999999
Q ss_pred EEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCCCEEE
Q 045402 184 VLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQN 263 (396)
Q Consensus 184 v~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~~i~n 263 (396)
|+|++++|.++.+.+|+||||+.+|+||+|+||.+.++||||+++++++||+|+||+|..+||++|||+|.++..+.++|
T Consensus 179 v~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~n 258 (394)
T PLN02155 179 VVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVEN 258 (394)
T ss_pred EEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEE
Confidence 99999999999888999999999999999999999999999999999999999999999999999999988766788999
Q ss_pred EEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEecC
Q 045402 264 VTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSS 343 (396)
Q Consensus 264 i~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~~ 343 (396)
|+|+||+|.++.+|++||+|.+.++|.|+||+|+||+|+++++||.|++.|+.....|+...+.+.|+||+|+||+++..
T Consensus 259 V~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~ 338 (394)
T PLN02155 259 VTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSA 338 (394)
T ss_pred EEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEec
Confidence 99999999999999999998654679999999999999999999999999987544455555668999999999999987
Q ss_pred CCceEEEecCCCCceecEEEEeEEEEeCC-cccceeeecccccccceecCCCCC
Q 045402 344 TPIAIKFNCSAKYPCEGIRLYKVNLSYLK-LVAQSSCNNVIGKALGIVQPNTCL 396 (396)
Q Consensus 344 ~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~~~~~~c~~v~~~~~~~~~~~~~~ 396 (396)
...++.+.|.+..||+||+|+||++...+ .+..+.|.||+|.+.+++.|++|+
T Consensus 339 ~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 339 TQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred CCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence 67799999999999999999999999886 445799999999999988999996
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=5e-76 Score=578.55 Aligned_cols=368 Identities=40% Similarity=0.738 Sum_probs=335.6
Q ss_pred CCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCc-EEEeccccccCcccCccEEEEEcCEEEeeccccc
Q 045402 27 TSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKG-RYLLGSVAFKGECQSSDITFQIDGTLVAPADYRV 105 (396)
Q Consensus 27 ~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G-~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~ 105 (396)
.+++++|+||||++||++|||+|||+|++++|++.+|++|+||+| +|+++++.|.+++|| +++|+++|+|+++.++..
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~ 127 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDV 127 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHH
Confidence 357999999999999999999999999998899888999999999 599999999888779 999999999999999998
Q ss_pred cCCC--cceEEEeceeceEEec-eeEeCCCCccccccc--ccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEec
Q 045402 106 LGQA--DNWLSFEGVSGVSIIG-GALDAKGTSLWACKA--AAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINR 180 (396)
Q Consensus 106 ~~~~--~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~--~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~ 180 (396)
|+.. +.|+.+.+.+|++|+| |+|||+|+.||+... ........||+++.|.+|+|++|++++++++|.|++++..
T Consensus 128 w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~ 207 (443)
T PLN02793 128 WKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTN 207 (443)
T ss_pred ccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEc
Confidence 9743 5799999999999999 999999999997531 1112234589999999999999999999999999999999
Q ss_pred eecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCCC
Q 045402 181 CQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEG 260 (396)
Q Consensus 181 ~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~~ 260 (396)
|+||+|++++|.++.+.+|+||||+.+|+||+|+||++.++||||+++++++||+|+||+|..+||++|||+|.+...+.
T Consensus 208 ~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~ 287 (443)
T PLN02793 208 CRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSE 287 (443)
T ss_pred cCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999988766678
Q ss_pred EEEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEE
Q 045402 261 VQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRG 340 (396)
Q Consensus 261 i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~ 340 (396)
++||+|+||+|.++.+|++||+|.+ ++|.|+||+|+||+|+++.+||.|++.|+.....|......+.|+||+|+||++
T Consensus 288 V~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~G 366 (443)
T PLN02793 288 VRDITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKG 366 (443)
T ss_pred EEEEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEE
Confidence 9999999999999999999999987 679999999999999999999999999976544455556678999999999999
Q ss_pred ecCCCceEEEecCCCCceecEEEEeEEEEeCC-cccceeeecccccccceecCCCCC
Q 045402 341 TSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLK-LVAQSSCNNVIGKALGIVQPNTCL 396 (396)
Q Consensus 341 ~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~~~~~~c~~v~~~~~~~~~~~~~~ 396 (396)
+.....++.+.|++..||+||+|+||++...+ +.....|.|+++.+.+.+.|+||+
T Consensus 367 t~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 367 TSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred EEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccc
Confidence 98656689999999999999999999999875 445689999999999999999996
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=6.1e-74 Score=561.17 Aligned_cols=363 Identities=42% Similarity=0.745 Sum_probs=329.9
Q ss_pred CCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCc-EEEeccccccCcccCccEEEEEcCEEEeeccc
Q 045402 25 AATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKG-RYLLGSVAFKGECQSSDITFQIDGTLVAPADY 103 (396)
Q Consensus 25 ~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G-~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~ 103 (396)
.++++.++|+||||++||++|||+|||+|++++|++.++++|+||+| +|+++++.|++++|+ +++|+++|+|+++.++
T Consensus 62 ~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s~d~ 140 (431)
T PLN02218 62 LRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSASQKR 140 (431)
T ss_pred cCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeCCCh
Confidence 35678999999999999999999999999988899888899999999 699999999998888 9999999999999999
Q ss_pred cccCCCcceEEEeceeceEEec---eeEeCCCCccccccccc--CCCCCCCceeEEEEeecceEEeceEEecCCcceEEE
Q 045402 104 RVLGQADNWLSFEGVSGVSIIG---GALDAKGTSLWACKAAA--GTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVI 178 (396)
Q Consensus 104 ~~~~~~~~~i~~~~~~nv~I~G---G~idg~g~~~~~~~~~~--~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~ 178 (396)
..|+....|+.+.+.+||+|+| |+|||+|+.||...... ......||+++.|.+|+|++|+|++++++|+|++++
T Consensus 141 ~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~~ 220 (431)
T PLN02218 141 SDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISI 220 (431)
T ss_pred hhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEEE
Confidence 9887667899999999999999 99999999999753211 122346899999999999999999999999999999
Q ss_pred eceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCC
Q 045402 179 NRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDE 258 (396)
Q Consensus 179 ~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~ 258 (396)
..|+||+|++++|.++.+.+|+||||+.+|+||+|+||.|.++||||+++++++||+|+||+|..+||++|||++.+...
T Consensus 221 ~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~~ 300 (431)
T PLN02218 221 EKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSK 300 (431)
T ss_pred EceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCCC
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999876556
Q ss_pred CCEEEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeE
Q 045402 259 EGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNI 338 (396)
Q Consensus 259 ~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni 338 (396)
+.++||+|+||++.++.+|++||+|.+ ++|.|+||+|+||+|+++.+||.|++.|+... .|....+.+.|+||+|+||
T Consensus 301 ~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~nI~~~NI 378 (431)
T PLN02218 301 AFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKNVVYRNI 378 (431)
T ss_pred ceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEEEEEEeE
Confidence 789999999999999999999999987 78999999999999999999999999998643 2555556789999999999
Q ss_pred EEecCCCceEEEecCCCCceecEEEEeEEEEeCCcccceeeecccccccceecCCCC
Q 045402 339 RGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQSSCNNVIGKALGIVQPNTC 395 (396)
Q Consensus 339 ~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~~~c~~v~~~~~~~~~~~~~ 395 (396)
+++.....++.+.|.+..||+||+|+||++... ...|.||.+...+. ++|.|
T Consensus 379 ~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~----~~~c~n~~~~~~~~-~~p~c 430 (431)
T PLN02218 379 SGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG----KATCTNANVVDKGA-VSPQC 430 (431)
T ss_pred EEEecCCcEEEEEECCCCCEeeEEEEeEEEECC----eeeEEEeeEEEccc-CCCCC
Confidence 999876678999999999999999999999842 46899999999985 45588
No 4
>PLN03010 polygalacturonase
Probab=100.00 E-value=3.2e-73 Score=551.16 Aligned_cols=355 Identities=39% Similarity=0.731 Sum_probs=326.6
Q ss_pred CCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCC-CcEEEEcCc-EEEeccccccCcccCccEEEEEcCEEEeecccc
Q 045402 27 TSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNE-STIIYVPKG-RYLLGSVAFKGECQSSDITFQIDGTLVAPADYR 104 (396)
Q Consensus 27 ~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~-g~~v~~p~G-~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~ 104 (396)
+++.+||+||||++||++|||+|||+|++++|+..+ +++|+||+| +|+++++.|++++|+.+++|+++|+|+++.++.
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 567999999999999999999999999988775432 379999999 799999999987763389999999999999999
Q ss_pred ccCCC--cceEEEeceeceEEec-eeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEece
Q 045402 105 VLGQA--DNWLSFEGVSGVSIIG-GALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRC 181 (396)
Q Consensus 105 ~~~~~--~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~ 181 (396)
.|+.. ..|+.+.+.+|++|+| |+|||+|+.||. ++.|.+|+|++|++++++++|.|++++..|
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~--------------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~ 188 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE--------------ALHISKCDNLTINGITSIDSPKNHISIKTC 188 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc--------------eEEEEeecCeEEeeeEEEcCCceEEEEecc
Confidence 99642 4689999999999999 999999999996 589999999999999999999999999999
Q ss_pred ecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCCCE
Q 045402 182 QDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGV 261 (396)
Q Consensus 182 ~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~~i 261 (396)
++|+|++++|.++...+|+||||+.+|++|+|+||++.++||||++++++.++.|+++.|..+||++|||++.+.....+
T Consensus 189 ~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V 268 (409)
T PLN03010 189 NYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKV 268 (409)
T ss_pred ccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCee
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999876555679
Q ss_pred EEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEe
Q 045402 262 QNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGT 341 (396)
Q Consensus 262 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~ 341 (396)
+||+|+||+|.++.+|++||+|.+ +.|.|+||+|+||+|+++++||.|++.|+.....|..+...+.|+||+|+||+++
T Consensus 269 ~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT 347 (409)
T PLN03010 269 SDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGT 347 (409)
T ss_pred EEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEE
Confidence 999999999999999999999987 7899999999999999999999999999875555555667889999999999999
Q ss_pred cCCCceEEEecCCCCceecEEEEeEEEEeCC-cccceeeecccccccceecCCCCC
Q 045402 342 SSTPIAIKFNCSAKYPCEGIRLYKVNLSYLK-LVAQSSCNNVIGKALGIVQPNTCL 396 (396)
Q Consensus 342 ~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~~~~~~c~~v~~~~~~~~~~~~~~ 396 (396)
.....++.+.|++..||+||+|+||++...+ +++.+.|.||++.+.+.+.|++||
T Consensus 348 ~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 348 TSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred eCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCccc
Confidence 8777899999999999999999999999876 456899999999999999999997
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=4.7e-74 Score=559.74 Aligned_cols=363 Identities=40% Similarity=0.700 Sum_probs=326.2
Q ss_pred CCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCc-EEEeccccccCcccCccEEEEEcCEEEeeccc
Q 045402 25 AATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKG-RYLLGSVAFKGECQSSDITFQIDGTLVAPADY 103 (396)
Q Consensus 25 ~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G-~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~ 103 (396)
+..++.+||++|||++||++|||+|||+|+++||++.+|++|+||+| +|+++++.|++++|+..++++++|+|.++..
T Consensus 18 ~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~- 96 (456)
T PLN03003 18 FTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK- 96 (456)
T ss_pred eeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-
Confidence 35567899999999999999999999999999898888999999999 5899999999887762488889999987654
Q ss_pred cccCCC-cceEEEeceeceEEec-eeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEece
Q 045402 104 RVLGQA-DNWLSFEGVSGVSIIG-GALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRC 181 (396)
Q Consensus 104 ~~~~~~-~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~ 181 (396)
..|... ..||.+.+.++++|+| |+|||+|+.||+.. ..||+++.|.+|+|++|+|++++++|.|++++..|
T Consensus 97 ~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~-------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c 169 (456)
T PLN03003 97 GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK-------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISEC 169 (456)
T ss_pred ccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc-------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEecc
Confidence 346432 5799999999999999 99999999999742 24899999999999999999999999999999999
Q ss_pred ecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCCCE
Q 045402 182 QDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGV 261 (396)
Q Consensus 182 ~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~~i 261 (396)
++|+|++++|.++.+.+|+||||+.+|+||+|+||.+.++||||+++++++||+|+||+|..+||++|||++.+...+.+
T Consensus 170 ~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V 249 (456)
T PLN03003 170 NYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATV 249 (456)
T ss_pred ccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceE
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999876555779
Q ss_pred EEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCC--CCCCCCcceEEEeEEEEeEE
Q 045402 262 QNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNL--NCPGQVSGVKISDIIYWNIR 339 (396)
Q Consensus 262 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~i~ni~~~ni~ 339 (396)
+||+|+||+|.++.+|++||+|.+ ++|.++||+|+||+|+++.+||.|++.|+.... .|....+.+.|+||+|+||+
T Consensus 250 ~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~ 328 (456)
T PLN03003 250 ENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFI 328 (456)
T ss_pred EEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEE
Confidence 999999999999999999999987 679999999999999999999999999975322 13334456899999999999
Q ss_pred EecCCCceEEEecCCCCceecEEEEeEEEEeCC----cccceeeecccccccceecCCCCC
Q 045402 340 GTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLK----LVAQSSCNNVIGKALGIVQPNTCL 396 (396)
Q Consensus 340 ~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~----~~~~~~c~~v~~~~~~~~~~~~~~ 396 (396)
++.....++.+.|++..||+||+|+||++.... ....+.|.||++.+.++++|++|+
T Consensus 329 GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 329 GTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred EEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCcc
Confidence 998777799999999999999999999998763 235799999999999888888996
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.1e-73 Score=555.79 Aligned_cols=367 Identities=43% Similarity=0.791 Sum_probs=327.8
Q ss_pred CCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEEEeccccccCcccC-ccEEEEEcCEEEeeccc
Q 045402 25 AATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQS-SDITFQIDGTLVAPADY 103 (396)
Q Consensus 25 ~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~~i~l~~~~~s-~~v~l~~~G~l~~~~~~ 103 (396)
-+.++.+||+||||++||++|||+|||+|++++|++.+|++|+||+|+|+++++.|++++|+ .+++| +|+++.++
T Consensus 31 ~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l----~L~~s~d~ 106 (404)
T PLN02188 31 GSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF----TLKAATDL 106 (404)
T ss_pred cCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE----EEEcCCCH
Confidence 44567999999999999999999999999988899888899999999999999999987753 04555 89999999
Q ss_pred cccCCCcceEEEeceeceEEec-eeEeCCCCcccccccc-cCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEece
Q 045402 104 RVLGQADNWLSFEGVSGVSIIG-GALDAKGTSLWACKAA-AGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRC 181 (396)
Q Consensus 104 ~~~~~~~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~~-~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~ 181 (396)
.+|+....|+.+...+||+|+| |+|||+|+.||+.... .......||+++.|.+|+|++|++++++++|+|++++..|
T Consensus 107 ~~y~~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~ 186 (404)
T PLN02188 107 SRYGSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVEC 186 (404)
T ss_pred HHCCCccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEcc
Confidence 9998766799988899999999 9999999999974321 1123456899999999999999999999999999999999
Q ss_pred ecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCCCE
Q 045402 182 QDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGV 261 (396)
Q Consensus 182 ~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~~i 261 (396)
++|+|++++|.++.+.+|+||||+.+|+||+|+||+|.++||||+++++++||+|+|+.|..+||++|||+|.+...+.+
T Consensus 187 ~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V 266 (404)
T PLN02188 187 RNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDV 266 (404)
T ss_pred ccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcE
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999887667889
Q ss_pred EEEEEEeeEEecCCeEEEEEeecCC-CCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCC-CCCcceEEEeEEEEeEE
Q 045402 262 QNVTVWKTVFTGTQNGLRIKSWARP-SNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCP-GQVSGVKISDIIYWNIR 339 (396)
Q Consensus 262 ~ni~i~n~~~~~~~~gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~i~ni~~~ni~ 339 (396)
+||+|+||+|.++.+|++||+|.+. +.|.++||+|+||+|+++.+||.|++.|+.... |. .....+.|+||+|+||+
T Consensus 267 ~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~-~~~~~~s~v~I~nIt~~nI~ 345 (404)
T PLN02188 267 TGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYS-CESKYPSGVTLSDIYFKNIR 345 (404)
T ss_pred EEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCC-CCcCCCCCcEEEeEEEEEEE
Confidence 9999999999999999999999652 468999999999999999999999999876332 32 23345789999999999
Q ss_pred EecCCCceEEEecCCCCceecEEEEeEEEEeCC--cccceeeecccccccceecCCCCC
Q 045402 340 GTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLK--LVAQSSCNNVIGKALGIVQPNTCL 396 (396)
Q Consensus 340 ~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~--~~~~~~c~~v~~~~~~~~~~~~~~ 396 (396)
++.....++.+.|.+..||+||+|+||++...+ +...+.|.||++.+.+.+.|+||.
T Consensus 346 gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 346 GTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred EEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 998766789999999999999999999999874 345799999999999999999995
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=8e-57 Score=431.64 Aligned_cols=323 Identities=36% Similarity=0.624 Sum_probs=277.1
Q ss_pred hhcCCCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceeceEEec-eeEeCCCCccc
Q 045402 58 CASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG-GALDAKGTSLW 136 (396)
Q Consensus 58 ~~~~~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G~idg~g~~~~ 136 (396)
|++.++++|+||+|+|+++++.|++++.+ ++++.++|++.++.....++. ..||.+.+++|++|+| |+|||+|+.||
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~ 78 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWW 78 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECET-TCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTC
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhh
Confidence 66667889999999999999998865546 899999999998765555554 6789999999999999 99999999999
Q ss_pred ccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEcc
Q 045402 137 ACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSS 216 (396)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~ 216 (396)
+...........||+++.|.+|++++|++++++++|.|++++..|+||+|++++|.++.+.+|+|||++.+|+||+|+||
T Consensus 79 ~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~ 158 (326)
T PF00295_consen 79 DGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENC 158 (326)
T ss_dssp SSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESE
T ss_pred ccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEe
Confidence 86532113445789999999999999999999999999999999999999999999987779999999999999999999
Q ss_pred EEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEE
Q 045402 217 SIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRF 296 (396)
Q Consensus 217 ~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~ 296 (396)
+++++||||+++++..||+|+||+|..+||++|||++.......++||+|+||+|.++.+|++||++.+ ++|.|+||+|
T Consensus 159 ~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-~~G~v~nI~f 237 (326)
T PF00295_consen 159 FIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-GGGYVSNITF 237 (326)
T ss_dssp EEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT-TSEEEEEEEE
T ss_pred ecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc-cceEEeceEE
Confidence 999999999999988899999999999999999998754333469999999999999999999999976 7899999999
Q ss_pred EeEEEecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEecCCCceEEEecCCCCceecEEEEeEEEEeCCcccc
Q 045402 297 IDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQ 376 (396)
Q Consensus 297 ~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~ 376 (396)
+||+|+++.+|+.|.+.|... ..+..++..+.|+||+|+||+++.....++.+.|.+..||+||+|+||++.. +...
T Consensus 238 ~ni~~~~v~~pi~i~~~y~~~-~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g~~~ 314 (326)
T PF00295_consen 238 ENITMENVKYPIFIDQDYRDG-GPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--GKKP 314 (326)
T ss_dssp EEEEEEEESEEEEEEEEECTT-EESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--SBSE
T ss_pred EEEEecCCceEEEEEeccccc-cccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--CCcC
Confidence 999999999999999988762 2233344567899999999999988767999999999999999999999997 3677
Q ss_pred eeeecccccc
Q 045402 377 SSCNNVIGKA 386 (396)
Q Consensus 377 ~~c~~v~~~~ 386 (396)
..|+||+.+.
T Consensus 315 ~~c~nv~~~~ 324 (326)
T PF00295_consen 315 AQCKNVPSGI 324 (326)
T ss_dssp SEEBSCCTT-
T ss_pred eEEECCCCCC
Confidence 8999998653
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-41 Score=335.59 Aligned_cols=275 Identities=32% Similarity=0.479 Sum_probs=234.6
Q ss_pred CCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEEEeccccccCcccCccEEEEE-cC-EEEeecc
Q 045402 25 AATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQI-DG-TLVAPAD 102 (396)
Q Consensus 25 ~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~-~G-~l~~~~~ 102 (396)
+++.+.++|.+|||++||.+|+++|||+||++ |+..+|++|+||+|+|+.++|+|+ | +++|++ +| +|+.+.+
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~-ca~a~Gg~V~lPaGtylsg~l~LK----S-~~~L~l~egatl~~~~~ 150 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDA-CASAGGGTVLLPAGTYLSGPLFLK----S-NVTLHLAEGATLLASSN 150 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHh-hhhhcCceEEECCceeEeeeEEEe----c-ccEEEecCCceeeCCCC
Confidence 45667899999999999999999999999975 787899999999999999999999 8 999999 47 9999999
Q ss_pred ccccCC--------Cc-----------------------ceEEEeceeceE-Eec-eeEeCCCC----cccccccccC-C
Q 045402 103 YRVLGQ--------AD-----------------------NWLSFEGVSGVS-IIG-GALDAKGT----SLWACKAAAG-T 144 (396)
Q Consensus 103 ~~~~~~--------~~-----------------------~~i~~~~~~nv~-I~G-G~idg~g~----~~~~~~~~~~-~ 144 (396)
+.+|+. .. ..+.....+|.. |.| ++++|+++ .||....... +
T Consensus 151 p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~ 230 (542)
T COG5434 151 PKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETR 230 (542)
T ss_pred hhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhc
Confidence 998883 11 112222345666 888 88888652 2665432100 1
Q ss_pred C--CCCCceeEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCC
Q 045402 145 T--CPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGD 222 (396)
Q Consensus 145 ~--~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d 222 (396)
- ...||..+.+..|.||+++|++|.+++.|++++..|+|++++|++|.+.... |+||+++.+|+||.|++|+|.++|
T Consensus 231 i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgD 309 (542)
T COG5434 231 IGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGD 309 (542)
T ss_pred ccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCC
Confidence 1 1158999999999999999999999999999999999999999999997655 999999999999999999999999
Q ss_pred ceEEecCC-----------CeeEEEEeeeecCCce-EEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecCCCCce
Q 045402 223 DCISIGRG-----------TNNLWIERVTCGPGHG-ISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGF 290 (396)
Q Consensus 223 D~i~~~~~-----------s~ni~i~n~~~~~~~g-i~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~ 290 (396)
|||+++++ ++|++|+||++..+|| +.+||+ ..++++||+++||.|.++.+||+||+..+ .+|.
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~ 384 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGGG 384 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc-ccee
Confidence 99999985 5899999999999996 889887 46889999999999999999999999877 6799
Q ss_pred EEeEEEEeEEEecCCccEEEE
Q 045402 291 VKGVRFIDAVMQNVQNPIIID 311 (396)
Q Consensus 291 v~nI~~~ni~~~~~~~~i~i~ 311 (396)
++||+|+++++.++..+..|.
T Consensus 385 v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 385 VRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred EEEEEEecccccCcccceeee
Confidence 999999999999986555544
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.94 E-value=1.8e-25 Score=214.69 Aligned_cols=246 Identities=20% Similarity=0.238 Sum_probs=181.5
Q ss_pred CCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEEEeccccccCcccCccEEEEEc-CEE--Eeecc
Q 045402 26 ATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQID-GTL--VAPAD 102 (396)
Q Consensus 26 ~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~-G~l--~~~~~ 102 (396)
.+.+.+++++|||++||++|+|+|||+||++| + .++++|.||+|+|+.+++.|+ + +++|.++ |.. ....+
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L~----s-pltL~G~~gAt~~vIdG~ 105 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRLP----S-GAQLIGVRGATRLVFTGG 105 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEEC----C-CcEEEecCCcEEEEEcCC
Confidence 45667999999999999999999999999865 4 356899999999999999998 6 8999997 332 12111
Q ss_pred ccccCCCcceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEecee
Q 045402 103 YRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQ 182 (396)
Q Consensus 103 ~~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~ 182 (396)
+.++.....++|+|+|-+|+++|..|. .++.+|.+..|++++|+++++.++..|+|.+..|+
T Consensus 106 -------~~lIiai~A~nVTIsGLtIdGsG~dl~-----------~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~ 167 (455)
T TIGR03808 106 -------PSLLSSEGADGIGLSGLTLDGGGIPLP-----------QRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVS 167 (455)
T ss_pred -------ceEEEEecCCCeEEEeeEEEeCCCccc-----------CCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCc
Confidence 345666678999999999999996432 36789999999999999999999988999999999
Q ss_pred ----------------------cEEEEeEEEEcCCC--------------------------------CCCCCceeeecc
Q 045402 183 ----------------------DVLVEGAKIIAAGD--------------------------------SPNTDGIHIQQS 208 (396)
Q Consensus 183 ----------------------nv~I~~~~i~~~~~--------------------------------~~~~DGi~~~~s 208 (396)
++.|++-+|....+ ....+||+++.+
T Consensus 168 ~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a 247 (455)
T TIGR03808 168 GDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRA 247 (455)
T ss_pred ceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEcc
Confidence 77777777776443 234568888888
Q ss_pred eeEEEEccEEecCC-ceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeec-CC
Q 045402 209 RNVKIRSSSIKTGD-DCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWA-RP 286 (396)
Q Consensus 209 ~nv~I~n~~i~~~d-D~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~-~~ 286 (396)
.+++|+++.++.++ |+|.+.+ ++|++|+++.|+.-.=..+.++ +.. +.-.|+|+++.+...|+.+.... +.
T Consensus 248 ~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym--fs~----~g~~i~~N~~~g~~~G~av~nf~~gg 320 (455)
T TIGR03808 248 GNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE--FAF----EGAVIANNTVDGAAVGVSVCNFNEGG 320 (455)
T ss_pred CCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE--EeC----CCcEEeccEEecCcceEEEEeecCCc
Confidence 88888888888877 8888877 7788888887764211122222 111 11347777777777787776542 11
Q ss_pred CCceEEeEEEEeEEEec
Q 045402 287 SNGFVKGVRFIDAVMQN 303 (396)
Q Consensus 287 ~~g~v~nI~~~ni~~~~ 303 (396)
....+..=.++|++-+.
T Consensus 321 r~~~~~gn~irn~~~~~ 337 (455)
T TIGR03808 321 RLAVVQGNIIRNLIPKR 337 (455)
T ss_pred eEEEEecceeeccccCC
Confidence 22345666677776654
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.89 E-value=2e-21 Score=177.10 Aligned_cols=213 Identities=29% Similarity=0.399 Sum_probs=118.5
Q ss_pred eeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEEEecc-ccccCcccCccEEEEEcC---E-EEeecccc
Q 045402 30 VYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGS-VAFKGECQSSDITFQIDG---T-LVAPADYR 104 (396)
Q Consensus 30 ~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~~-i~l~~~~~s~~v~l~~~G---~-l~~~~~~~ 104 (396)
.+||++|||++||++|||+|||+||+++ +..++++||||+|+|+++. +.++ + +++|+++| + +.......
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G~Y~i~~~l~~~----s-~v~l~G~g~~~~~~~~~~~~~ 74 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPGTYRISGTLIIP----S-NVTLRGAGGNSTILFLSGSGD 74 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SEEEEESS-EEE-----T-TEEEEESSTTTEEEEECTTTS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCcEEEEeCCeEcC----C-CeEEEccCCCeeEEEecCccc
Confidence 4799999999999999999999999654 6678999999999999887 8887 6 99999986 3 33222222
Q ss_pred ccCCCcceEEEec-eec--eEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEece
Q 045402 105 VLGQADNWLSFEG-VSG--VSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRC 181 (396)
Q Consensus 105 ~~~~~~~~i~~~~-~~n--v~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~ 181 (396)
.+........+.. ..+ +.|++.++++.+...- .....+.+..++++.|+++++.++...++.+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~~-----------~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~ 143 (225)
T PF12708_consen 75 SFSVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDPN-----------NNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTG 143 (225)
T ss_dssp TSCCEEEEEECCSCSCCEEEEEEEEEEEETCGCE------------SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECC
T ss_pred ccccccceeeeecCCCCceEEEEeeEEEcccccCC-----------CCceEEEEEeCCeEEEEeEEEEccCccEEEEEcc
Confidence 2210001111111 111 2244444554443110 0134566666777777777777776666666644
Q ss_pred ecEEEEeEEEEcCCCCCCCCceeeec-ceeEEEEccEEecCCceEEecCCCeeEEEEeeeecC-C-ceEEEEeccccCCC
Q 045402 182 QDVLVEGAKIIAAGDSPNTDGIHIQQ-SRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGP-G-HGISIGSLGKDMDE 258 (396)
Q Consensus 182 ~nv~I~~~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~-~-~gi~igs~~~~~~~ 258 (396)
....+.+..... ++.+.. +.++.+.++.+..+++++..+ .+++.++||.+.. . .|+.+...
T Consensus 144 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~i~n~~~~~~~~~gi~i~~~------ 207 (225)
T PF12708_consen 144 TDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIILG--NNNITISNNTFEGNCGNGINIEGG------ 207 (225)
T ss_dssp EECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEECE--EEEEEEECEEEESSSSESEEEEEC------
T ss_pred ccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEee--cceEEEEeEEECCccceeEEEECC------
Confidence 443333332221 233322 345555666666666663222 2566666666654 2 35555321
Q ss_pred CCEEEEEEEeeEEecCCeEE
Q 045402 259 EGVQNVTVWKTVFTGTQNGL 278 (396)
Q Consensus 259 ~~i~ni~i~n~~~~~~~~gi 278 (396)
.++.++|++|+++..|+
T Consensus 208 ---~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 ---SNIIISNNTIENCDDGI 224 (225)
T ss_dssp ---SEEEEEEEEEESSSEEE
T ss_pred ---eEEEEEeEEEECCccCc
Confidence 13566666666655554
No 11
>PLN02793 Probable polygalacturonase
Probab=99.87 E-value=1.1e-19 Score=179.58 Aligned_cols=217 Identities=18% Similarity=0.239 Sum_probs=169.7
Q ss_pred cEEEEEcCEEEeeccccccCC------------CcceEEEeceeceEEece-eEeCCCCcccccccccCCCCCCCceeEE
Q 045402 88 DITFQIDGTLVAPADYRVLGQ------------ADNWLSFEGVSGVSIIGG-ALDAKGTSLWACKAAAGTTCPNGATTLS 154 (396)
Q Consensus 88 ~v~l~~~G~l~~~~~~~~~~~------------~~~~i~~~~~~nv~I~GG-~idg~g~~~~~~~~~~~~~~~~~~~~i~ 154 (396)
|++|.+.|+|.+... ..|.. ...++.+.+++|++|+|- ..+.. .+.+.
T Consensus 144 ni~ItG~G~IDG~G~-~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp------------------~~~i~ 204 (443)
T PLN02793 144 HLTVEGGGTVNGMGH-EWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ------------------QMHIA 204 (443)
T ss_pred eEEEEeceEEECCCc-ccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC------------------CeEEE
Confidence 899999888876432 12211 134788999999999994 44332 23588
Q ss_pred EEeecceEEeceEEecC----CcceEEEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecC
Q 045402 155 ITNSNNVSIKGLLSLNS----QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGR 229 (396)
Q Consensus 155 ~~~~~nv~i~~v~i~~~----~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~ 229 (396)
+.+|+|++|+++++.++ ..++|++..|+||+|+|++|.+. .|+|.+. .|+||+|+||....+. ||++++
T Consensus 205 ~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~g-----DDcIaik~~s~nI~I~n~~c~~Gh-GisIGS 278 (443)
T PLN02793 205 FTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTG-----DDCISIVGNSSRIKIRNIACGPGH-GISIGS 278 (443)
T ss_pred EEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCC-----CCeEEecCCcCCEEEEEeEEeCCc-cEEEec
Confidence 99999999999999863 35799999999999999999984 5789886 6899999999997764 799987
Q ss_pred C--------CeeEEEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecCC---------CCceE
Q 045402 230 G--------TNNLWIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARP---------SNGFV 291 (396)
Q Consensus 230 ~--------s~ni~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~---------~~g~v 291 (396)
. .+||+|+||++.++ .|++|++... ..+.++||+|+|++|.+..++|.|...+.. ....|
T Consensus 279 lg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I 356 (443)
T PLN02793 279 LGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKV 356 (443)
T ss_pred ccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEE
Confidence 2 58999999999876 5899998632 235799999999999999999999876531 12468
Q ss_pred EeEEEEeEEEecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEecC
Q 045402 292 KGVRFIDAVMQNVQ-NPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSS 343 (396)
Q Consensus 292 ~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~~ 343 (396)
+||+|+|++.+... .++.+.- . +..+++||+|+||+++..
T Consensus 357 ~nI~~~nI~Gt~~~~~ai~l~c---s---------~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 357 ENISFVHIKGTSATEEAIKFAC---S---------DSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred EeEEEEEEEEEEcccccEEEEe---C---------CCCCEeeEEEEeeEEEec
Confidence 99999999988753 4555542 2 234799999999998864
No 12
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.86 E-value=5.7e-19 Score=172.61 Aligned_cols=220 Identities=17% Similarity=0.186 Sum_probs=169.7
Q ss_pred cEEEEEcCEEEeeccccccCC-----------CcceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEE
Q 045402 88 DITFQIDGTLVAPADYRVLGQ-----------ADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSIT 156 (396)
Q Consensus 88 ~v~l~~~G~l~~~~~~~~~~~-----------~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~ 156 (396)
+++|.+.|+|.+... ..|.. ...++.+.+++|+.|.|-++.... .+.+.+.
T Consensus 123 ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp-----------------~w~i~~~ 184 (404)
T PLN02188 123 GLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSK-----------------FFHIALV 184 (404)
T ss_pred eEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCC-----------------CeEEEEE
Confidence 788888888876543 22321 134788889999999995443221 2468999
Q ss_pred eecceEEeceEEecC----CcceEEEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecC--
Q 045402 157 NSNNVSIKGLLSLNS----QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGR-- 229 (396)
Q Consensus 157 ~~~nv~i~~v~i~~~----~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~-- 229 (396)
+|+|++|+++++.++ ..++|++..|+||+|+|++|.+. .|+|.+. .++||+|+|+....+ .||++++
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~G-----DDcIaiksg~~nI~I~n~~c~~g-hGisiGSlG 258 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTG-----DDCISIGQGNSQVTITRIRCGPG-HGISVGSLG 258 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCC-----CcEEEEccCCccEEEEEEEEcCC-CcEEeCCCC
Confidence 999999999999863 34799999999999999999984 5789986 578999999998666 5799877
Q ss_pred ------CCeeEEEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecC---------CCCceEEe
Q 045402 230 ------GTNNLWIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWAR---------PSNGFVKG 293 (396)
Q Consensus 230 ------~s~ni~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~---------~~~g~v~n 293 (396)
+.+||+|+||++.++ .|++|++.......+.++||+|+|++|.+...+|.|...+. +....|+|
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~n 338 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSD 338 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEe
Confidence 268999999999986 59999885322234679999999999999989999986432 12367999
Q ss_pred EEEEeEEEecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEecC
Q 045402 294 VRFIDAVMQNVQ-NPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSS 343 (396)
Q Consensus 294 I~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~~ 343 (396)
|+|+||+.+... .++.+.- . +..+++||+|+||+++..
T Consensus 339 It~~nI~gt~~~~~a~~l~c---s---------~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 339 IYFKNIRGTSSSQVAVLLKC---S---------RGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEEEEEEEecCceEEEEEE---C---------CCCCEeeEEEEeeEEEec
Confidence 999999998753 3454442 2 234799999999999854
No 13
>PLN02155 polygalacturonase
Probab=99.84 E-value=1.4e-18 Score=169.17 Aligned_cols=219 Identities=17% Similarity=0.185 Sum_probs=165.7
Q ss_pred cEEEEEcCEEEeeccccccC---------CCcceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEee
Q 045402 88 DITFQIDGTLVAPADYRVLG---------QADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNS 158 (396)
Q Consensus 88 ~v~l~~~G~l~~~~~~~~~~---------~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (396)
+++|.+ |+|-+... ..|. ....++.+.+++|++|.|-++... ....+.+.+|
T Consensus 116 ~i~i~G-G~iDGqG~-~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS-----------------p~w~i~~~~~ 176 (394)
T PLN02155 116 RFSLVG-GTFDARAN-GFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS-----------------QVSHMTLNGC 176 (394)
T ss_pred CCEEEc-cEEecCce-eEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-----------------CCeEEEEECe
Confidence 677776 77654322 1121 112468888999999999444221 1346899999
Q ss_pred cceEEeceEEecCC----cceEEEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCC---
Q 045402 159 NNVSIKGLLSLNSQ----MYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRG--- 230 (396)
Q Consensus 159 ~nv~i~~v~i~~~~----~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~--- 230 (396)
+|++|++++|.++. .++|++..|+||+|+|++|.+. .|+|.+. +|+||+|+||....+ .||++++.
T Consensus 177 ~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~g-----DDcIaik~gs~nI~I~n~~c~~G-hGisIGS~g~~ 250 (394)
T PLN02155 177 TNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTG-----DDCVAIGPGTRNFLITKLACGPG-HGVSIGSLAKE 250 (394)
T ss_pred eeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecC-----CceEEcCCCCceEEEEEEEEECC-ceEEecccccc
Confidence 99999999998743 4799999999999999999984 4788887 478999999999876 57999882
Q ss_pred -----CeeEEEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecCC---------CCceEEeEE
Q 045402 231 -----TNNLWIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARP---------SNGFVKGVR 295 (396)
Q Consensus 231 -----s~ni~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~---------~~g~v~nI~ 295 (396)
.+||+|+||++.++ .|++|++... ...+.++||+|+|++|.+...+|.|.+.+.+ ....|+||+
T Consensus 251 ~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It 329 (394)
T PLN02155 251 LNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVT 329 (394)
T ss_pred CCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEE
Confidence 48999999999876 5899988411 1246799999999999999999999765431 123699999
Q ss_pred EEeEEEecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEecCC
Q 045402 296 FIDAVMQNVQ-NPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSST 344 (396)
Q Consensus 296 ~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~~~ 344 (396)
|+|++.+... .++.+.- . +..+++||+|+||+++...
T Consensus 330 ~~ni~gt~~~~~a~~l~c---~---------~~~pc~~I~l~nv~i~~~~ 367 (394)
T PLN02155 330 YKNIQGTSATQEAMKLVC---S---------KSSPCTGITLQDIKLTYNK 367 (394)
T ss_pred EEeeEEEecCCceEEEEe---C---------CCCCEEEEEEEeeEEEecC
Confidence 9999998763 4555542 2 2347999999999998653
No 14
>PLN02218 polygalacturonase ADPG
Probab=99.84 E-value=1.1e-18 Score=171.64 Aligned_cols=217 Identities=18% Similarity=0.201 Sum_probs=167.6
Q ss_pred cEEEEEc--CEEEeeccccccCC------------CcceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeE
Q 045402 88 DITFQID--GTLVAPADYRVLGQ------------ADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTL 153 (396)
Q Consensus 88 ~v~l~~~--G~l~~~~~~~~~~~------------~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i 153 (396)
|++|.+. |+|-+... ..|.. ...++.+.+++|++|+|-++.... .+.+
T Consensus 157 ni~I~G~~~GtIDG~G~-~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp-----------------~w~i 218 (431)
T PLN02218 157 NLSVDGGSTGVVDGNGE-TWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQ-----------------QIQI 218 (431)
T ss_pred EEEEECCCCcEEeCCch-hhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCC-----------------CEEE
Confidence 7888885 78875431 22211 124688999999999995543221 2468
Q ss_pred EEEeecceEEeceEEecC----CcceEEEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEec
Q 045402 154 SITNSNNVSIKGLLSLNS----QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIG 228 (396)
Q Consensus 154 ~~~~~~nv~i~~v~i~~~----~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~ 228 (396)
.+.+|+|++|+++++..+ ..++|++.+|+||.|+|++|.+. .|.|.+. +|+||+|+||....+ .||+++
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tG-----DDcIaIksgs~nI~I~n~~c~~G-HGisIG 292 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTG-----DDCISIESGSQNVQINDITCGPG-HGISIG 292 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecC-----CceEEecCCCceEEEEeEEEECC-CCEEEC
Confidence 999999999999999863 35799999999999999999984 4788887 589999999999765 579998
Q ss_pred CC--------CeeEEEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecCC--------CCceE
Q 045402 229 RG--------TNNLWIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARP--------SNGFV 291 (396)
Q Consensus 229 ~~--------s~ni~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~v 291 (396)
+. .+||+|+||++.+. .|++|++... ..+.++||+|+|++|.+..++|.|...+.. ....|
T Consensus 293 S~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G--g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I 370 (431)
T PLN02218 293 SLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG--GSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQV 370 (431)
T ss_pred cCCCCCCCceEEEEEEEccEEecCCcceEEeecCC--CCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEE
Confidence 72 47999999999886 5999998632 246799999999999999999999876431 23469
Q ss_pred EeEEEEeEEEecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEec
Q 045402 292 KGVRFIDAVMQNVQ-NPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTS 342 (396)
Q Consensus 292 ~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~ 342 (396)
+||+|+||+.+... .++.+. |. +..+++||+|+||.++.
T Consensus 371 ~nI~~~NI~gtsa~~~ai~l~---cs---------~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 371 KNVVYRNISGTSASDVAITFN---CS---------KNYPCQGIVLDNVNIKG 410 (431)
T ss_pred EEEEEEeEEEEecCCcEEEEE---EC---------CCCCEeeEEEEeEEEEC
Confidence 99999999998653 344444 22 23479999999999975
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.84 E-value=8e-19 Score=168.73 Aligned_cols=217 Identities=23% Similarity=0.254 Sum_probs=165.1
Q ss_pred cEEEEEcCEEEeeccccccC----------CCcceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEe
Q 045402 88 DITFQIDGTLVAPADYRVLG----------QADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITN 157 (396)
Q Consensus 88 ~v~l~~~G~l~~~~~~~~~~----------~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~ 157 (396)
++++.+.|+|.+... ..|. .+..++.+.+++|++|+|-++.... .+.+.+.+
T Consensus 61 ni~i~G~G~IDG~G~-~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp-----------------~w~~~~~~ 122 (326)
T PF00295_consen 61 NITITGKGTIDGNGQ-AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP-----------------FWHIHIND 122 (326)
T ss_dssp EEECTTSSEEE--GG-GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S-----------------SESEEEES
T ss_pred EEEecCCceEcCchh-hhhccccccccccccccceeeeeeecceEEEeeEecCCC-----------------eeEEEEEc
Confidence 677766778776433 1121 1135788999999999994443211 23588999
Q ss_pred ecceEEeceEEecCC----cceEEEeceecEEEEeEEEEcCCCCCCCCceeeecce-eEEEEccEEecCCceEEecC---
Q 045402 158 SNNVSIKGLLSLNSQ----MYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSR-NVKIRSSSIKTGDDCISIGR--- 229 (396)
Q Consensus 158 ~~nv~i~~v~i~~~~----~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~~~~--- 229 (396)
|+|++|++++|.++. .++|++..|+||+|+|+.|++. .|+|.+.+.+ ||+|+||.+..+ .|+++++
T Consensus 123 ~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~g-----DD~Iaiks~~~ni~v~n~~~~~g-hGisiGS~~~ 196 (326)
T PF00295_consen 123 CDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNG-----DDCIAIKSGSGNILVENCTCSGG-HGISIGSEGS 196 (326)
T ss_dssp EEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESS-----SESEEESSEECEEEEESEEEESS-SEEEEEEESS
T ss_pred cCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccc-----cCcccccccccceEEEeEEEecc-ccceeeeccC
Confidence 999999999998754 4699999999999999999984 5789998655 999999999876 4588875
Q ss_pred C-----CeeEEEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecCC--------CCceEEeEE
Q 045402 230 G-----TNNLWIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARP--------SNGFVKGVR 295 (396)
Q Consensus 230 ~-----s~ni~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~v~nI~ 295 (396)
+ .+||+|+||++.++ .|+.|++.. ...+.++||+|+|++|.+..+++.|...+.. ....++||+
T Consensus 197 ~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~ 274 (326)
T PF00295_consen 197 GGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNIT 274 (326)
T ss_dssp SSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEE
T ss_pred CccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEE
Confidence 2 47999999999876 589998852 2346799999999999998899998865331 235799999
Q ss_pred EEeEEEecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEec
Q 045402 296 FIDAVMQNVQ-NPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTS 342 (396)
Q Consensus 296 ~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~ 342 (396)
|+||+.+... .++.+.. . +..+++||+|+||.++.
T Consensus 275 ~~nitg~~~~~~~i~i~~---~---------~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 275 FRNITGTSAGSSAISIDC---S---------PGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEEEEEESTSEEEEEE----B---------TTSSEEEEEEEEEEEES
T ss_pred EEeeEEEeccceEEEEEE---C---------CcCcEEeEEEEeEEEEc
Confidence 9999998776 5666653 1 23379999999999997
No 16
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.84 E-value=1.7e-18 Score=170.01 Aligned_cols=218 Identities=17% Similarity=0.209 Sum_probs=169.0
Q ss_pred cEEEEEcCEEEeeccccccCC---CcceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEe
Q 045402 88 DITFQIDGTLVAPADYRVLGQ---ADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIK 164 (396)
Q Consensus 88 ~v~l~~~G~l~~~~~~~~~~~---~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~ 164 (396)
+++|.+.|+|.+... ..|.. +..++.+.+++|+.|.|-++.... ...+.+.+|+|++|+
T Consensus 114 ~i~I~G~GtIDGqG~-~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp-----------------~w~i~i~~c~nV~i~ 175 (456)
T PLN03003 114 GLVIEGDGEINGQGS-SWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP-----------------MAHIHISECNYVTIS 175 (456)
T ss_pred ceEEeccceEeCCch-hhhhcccCCceEEEEEecCCcEEeCeEEecCC-----------------cEEEEEeccccEEEE
Confidence 899999998876432 22321 235788999999999994442211 246899999999999
Q ss_pred ceEEecC----CcceEEEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCC--------C
Q 045402 165 GLLSLNS----QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRG--------T 231 (396)
Q Consensus 165 ~v~i~~~----~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~--------s 231 (396)
++++..+ ..++|++..|+||.|+|++|.+. .|+|.+. +|+||+|+||....+ .||++++. .
T Consensus 176 ~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tG-----DDCIaiksgs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V 249 (456)
T PLN03003 176 SLRINAPESSPNTDGIDVGASSNVVIQDCIIATG-----DDCIAINSGTSNIHISGIDCGPG-HGISIGSLGKDGETATV 249 (456)
T ss_pred EEEEeCCCCCCCCCcEeecCcceEEEEecEEecC-----CCeEEeCCCCccEEEEeeEEECC-CCeEEeeccCCCCcceE
Confidence 9999864 24799999999999999999984 4788887 578999999999766 57999872 6
Q ss_pred eeEEEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecCC-----------CCceEEeEEEEeE
Q 045402 232 NNLWIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARP-----------SNGFVKGVRFIDA 299 (396)
Q Consensus 232 ~ni~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~-----------~~g~v~nI~~~ni 299 (396)
+||+|+||++.++ .|++|++.... .+.++||+|+|++|.+..++|.|...+.+ ....|+||+|+||
T Consensus 250 ~NV~v~n~~~~~T~nGvRIKT~~Gg--~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI 327 (456)
T PLN03003 250 ENVCVQNCNFRGTMNGARIKTWQGG--SGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNF 327 (456)
T ss_pred EEEEEEeeEEECCCcEEEEEEeCCC--CeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeE
Confidence 8999999999986 59999986321 35799999999999999999999765531 1246899999999
Q ss_pred EEecC-CccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEecC
Q 045402 300 VMQNV-QNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSS 343 (396)
Q Consensus 300 ~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~~ 343 (396)
+.+.. +.++.+. |. +..+.+||+|+||.++..
T Consensus 328 ~GTs~~~~ai~l~---Cs---------~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 328 IGTSKSEYGVDFR---CS---------ERVPCTEIFLRDMKIETA 360 (456)
T ss_pred EEEeCccceEEEE---eC---------CCCCeeeEEEEEEEEEec
Confidence 98654 3455554 32 234789999999998754
No 17
>PLN03010 polygalacturonase
Probab=99.82 E-value=8.8e-18 Score=163.95 Aligned_cols=214 Identities=18% Similarity=0.208 Sum_probs=163.9
Q ss_pred cEEEEEcCEEEeeccccccCCCcceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceE
Q 045402 88 DITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLL 167 (396)
Q Consensus 88 ~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~ 167 (396)
|++|.+.|+|.+.. ..|. .++.+.+++|++|+|-++.... .+.+.+.+|+|++|++++
T Consensus 140 nv~I~G~G~IDG~G--~~ww---~~l~~~~~~nv~v~gitl~nsp-----------------~~~i~i~~~~nv~i~~i~ 197 (409)
T PLN03010 140 GLMIDGSGTIDGRG--SSFW---EALHISKCDNLTINGITSIDSP-----------------KNHISIKTCNYVAISKIN 197 (409)
T ss_pred ccEEeeceEEeCCC--cccc---ceEEEEeecCeEEeeeEEEcCC-----------------ceEEEEeccccEEEEEEE
Confidence 78888888887643 2232 1588889999999994442211 236889999999999999
Q ss_pred EecCC----cceEEEeceecEEEEeEEEEcCCCCCCCCceeeec-ceeEEEEccEEecCCceEEecCC--------CeeE
Q 045402 168 SLNSQ----MYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQ-SRNVKIRSSSIKTGDDCISIGRG--------TNNL 234 (396)
Q Consensus 168 i~~~~----~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~~~~~--------s~ni 234 (396)
+..+. .++|++..|++|+|+|++|.+. .|+|.+.+ +.++.|+++....+ .||++++. .+||
T Consensus 198 I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~g-----DDcIaiksgs~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV 271 (409)
T PLN03010 198 ILAPETSPNTDGIDISYSTNINIFDSTIQTG-----DDCIAINSGSSNINITQINCGPG-HGISVGSLGADGANAKVSDV 271 (409)
T ss_pred EeCCCCCCCCCceeeeccceEEEEeeEEecC-----CCeEEecCCCCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEE
Confidence 98743 4799999999999999999994 47888873 56777777776654 57999873 5899
Q ss_pred EEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecCC---------CCceEEeEEEEeEEEecC
Q 045402 235 WIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARP---------SNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 235 ~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~---------~~g~v~nI~~~ni~~~~~ 304 (396)
+|+||++.++ .|++|++... ..+.++||+|+|++|.+..++|.|...+.. ..-.|+||+|+|++.+..
T Consensus 272 ~v~n~~i~~t~~GirIKt~~G--~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~ 349 (409)
T PLN03010 272 HVTHCTFNQTTNGARIKTWQG--GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTS 349 (409)
T ss_pred EEEeeEEeCCCcceEEEEecC--CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeC
Confidence 9999999986 5899988632 235799999999999999999999876532 112689999999999754
Q ss_pred C-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEecC
Q 045402 305 Q-NPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSS 343 (396)
Q Consensus 305 ~-~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~~ 343 (396)
. .++.+. |+. ..+.+||+|+||+++..
T Consensus 350 ~~~~i~l~---Cs~---------~~pC~ni~~~~v~l~~~ 377 (409)
T PLN03010 350 NENAITLK---CSA---------ITHCKDVVMDDIDVTME 377 (409)
T ss_pred CCccEEEE---eCC---------CCCEeceEEEEEEEEec
Confidence 3 455554 331 23689999999999864
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.80 E-value=4.4e-17 Score=158.37 Aligned_cols=273 Identities=16% Similarity=0.193 Sum_probs=154.2
Q ss_pred CcEEEEcCcEEEecc---ccccCcccCcc-EEEEEc-CEEEeeccccccCCCcceEEEeceeceEEec-eeEeCCCCccc
Q 045402 63 STIIYVPKGRYLLGS---VAFKGECQSSD-ITFQID-GTLVAPADYRVLGQADNWLSFEGVSGVSIIG-GALDAKGTSLW 136 (396)
Q Consensus 63 g~~v~~p~G~Y~~~~---i~l~~~~~s~~-v~l~~~-G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G~idg~g~~~~ 136 (396)
-.+|||+||+|.++. +.|+ + | -+++++ |.+.. +++......+|+.|.| |++.|....|.
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~----s-n~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~ 296 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLP----S-NTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYE 296 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-----T-T--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TT
T ss_pred cceEEeCCceEEeCCCccEEEC----C-CccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEe
Confidence 369999999999875 6776 5 5 489997 65554 4454445789999999 99999887663
Q ss_pred cccc-c-----cCCCCC-CCceeEE---EEeecceEEeceEEecCCcceEEEecee----cEEEEeEEEEcCCCCCCCCc
Q 045402 137 ACKA-A-----AGTTCP-NGATTLS---ITNSNNVSIKGLLSLNSQMYHIVINRCQ----DVLVEGAKIIAAGDSPNTDG 202 (396)
Q Consensus 137 ~~~~-~-----~~~~~~-~~~~~i~---~~~~~nv~i~~v~i~~~~~~~i~~~~~~----nv~I~~~~i~~~~~~~~~DG 202 (396)
.... + ++..++ ..-+++. ...++++.++|++|.++|+|.+.+.... +..|+|.++...++ .++||
T Consensus 297 A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qtDG 375 (582)
T PF03718_consen 297 ADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQTDG 375 (582)
T ss_dssp BBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT---
T ss_pred ccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-eccCC
Confidence 3211 1 111111 1224454 3455689999999999999999999555 58999999998665 58999
Q ss_pred eeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCc-e--EEEEeccccCCCCCEEEEEEEeeEEecCC----
Q 045402 203 IHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGH-G--ISIGSLGKDMDEEGVQNVTVWKTVFTGTQ---- 275 (396)
Q Consensus 203 i~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~-g--i~igs~~~~~~~~~i~ni~i~n~~~~~~~---- 275 (396)
|.+. ++-+|+||+++..||+|.+.. .++.|+||+++..+ | +.+|.. ...+++|.|+|+.+..++
T Consensus 376 i~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~ 446 (582)
T PF03718_consen 376 IELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWH 446 (582)
T ss_dssp -B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSG
T ss_pred cccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecc
Confidence 9996 677889999999999998766 69999999998754 3 666542 456999999999999763
Q ss_pred -----eEEEEEee-c---CC-----CCceEEeEEEEeEEEecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEE
Q 045402 276 -----NGLRIKSW-A---RP-----SNGFVKGVRFIDAVMQNVQ-NPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRG 340 (396)
Q Consensus 276 -----~gi~i~~~-~---~~-----~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~ 340 (396)
.+|...+. + +. +.-.||+++|+|++++..- ..+.|.+... .....|+|+.|+...+
T Consensus 447 ~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plqn---------~~nl~ikN~~~~~w~~ 517 (582)
T PF03718_consen 447 NNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQN---------YDNLVIKNVHFESWNG 517 (582)
T ss_dssp GCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SEE---------EEEEEEEEEEECEET-
T ss_pred cCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecCC---------CcceEEEEeecccccC
Confidence 34433321 1 10 1125899999999999864 3556654311 1224566666664433
Q ss_pred ecCCCceEEEe---cC---CCCceecEEEEeEEEE
Q 045402 341 TSSTPIAIKFN---CS---AKYPCEGIRLYKVNLS 369 (396)
Q Consensus 341 ~~~~~~~~~i~---~~---~~~~i~~i~~~ni~i~ 369 (396)
..-......+- .. ......+|.|+|.+|.
T Consensus 518 ~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVg 552 (582)
T PF03718_consen 518 LDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVG 552 (582)
T ss_dssp CGCSTT-EEE---CCTTT--B--EEEEEEEEEEET
T ss_pred cccccceeeccccccccccccccccceEEEeEEEC
Confidence 32111011111 11 1234688999998885
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.73 E-value=3.8e-15 Score=142.09 Aligned_cols=226 Identities=20% Similarity=0.276 Sum_probs=144.3
Q ss_pred HHHHHHHHhhcCCCcEEEEcCcEEEe-ccccccCcccCccEEEEEcC---E-EEeeccccccCCCcceEEEeceeceEEe
Q 045402 50 FAKAWAAACASNESTIIYVPKGRYLL-GSVAFKGECQSSDITFQIDG---T-LVAPADYRVLGQADNWLSFEGVSGVSII 124 (396)
Q Consensus 50 iq~Ai~~a~~~~~g~~v~~p~G~Y~~-~~i~l~~~~~s~~v~l~~~G---~-l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
||+|+++| .+|++|+||+|+|.+ +++.+.. + +++|.++| + |.+..... .+..+.. .+++|+|+
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~~---~-~Iti~G~g~~~tvid~~~~~~----~~~~i~v-~a~~VtI~ 68 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLDA---D-GVTIRGAGMDETILDFSGQVG----GAEGLLV-TSDDVTLS 68 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEeC---C-CeEEEecCCCccEEecccCCC----CCceEEE-EeCCeEEE
Confidence 69999876 669999999999986 5677762 4 79998876 3 33322110 1223333 36778888
Q ss_pred ceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEec-------CCcceEEEeceecEEEEeEEEEcCCCC
Q 045402 125 GGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLN-------SQMYHIVINRCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~-------~~~~~i~~~~~~nv~I~~~~i~~~~~~ 197 (396)
|-++...+ ...|.+..|++++|+++++.. ...++|.+..|++++|++++++..
T Consensus 69 ~ltI~~~~-----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~--- 128 (314)
T TIGR03805 69 DLAVENTK-----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA--- 128 (314)
T ss_pred eeEEEcCC-----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC---
Confidence 74443221 125667778888888888752 235778888888888888888763
Q ss_pred CCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEecCCe
Q 045402 198 PNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTGTQN 276 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~ 276 (396)
..+||.+..|++++|++++++....||.+.. +.+++|+++.+.+. .|+.+-..... .....++++|+++.+.+...
T Consensus 129 -~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~n~~ 205 (314)
T TIGR03805 129 -SDAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVRVFDNIIFDNNT 205 (314)
T ss_pred -CcccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceEEECCEEECCCC
Confidence 2247888878888888888887777887776 67788888877654 46666332111 12345678888888876421
Q ss_pred -EE-----EEEeecCCCCceE----EeEEEEeEEEecCCc-cEEEE
Q 045402 277 -GL-----RIKSWARPSNGFV----KGVRFIDAVMQNVQN-PIIID 311 (396)
Q Consensus 277 -gi-----~i~~~~~~~~g~v----~nI~~~ni~~~~~~~-~i~i~ 311 (396)
.+ .+...+. +.|.+ +++.|+|.++++... ++.+.
T Consensus 206 ~n~~~~gn~v~~~~~-g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 206 PNFAPAGSIVASVPA-GTGVVVMANRDVEIFGNVISNNDTANVLIS 250 (314)
T ss_pred CCCcccCCceecCCC-CcEEEEEcccceEEECCEEeCCcceeEEEE
Confidence 11 1111111 23433 778888888877663 55554
No 20
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.35 E-value=2.3e-10 Score=109.31 Aligned_cols=163 Identities=23% Similarity=0.359 Sum_probs=125.4
Q ss_pred eeceEEec-e----eEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEE
Q 045402 118 VSGVSIIG-G----ALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKII 192 (396)
Q Consensus 118 ~~nv~I~G-G----~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~ 192 (396)
.++|+|.| | ++++.++. .....+ ...+++++|+++++.++..++|.+..|++++|+++++.
T Consensus 31 ~~~Iti~G~g~~~tvid~~~~~-------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~ 96 (314)
T TIGR03805 31 ADGVTIRGAGMDETILDFSGQV-------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVE 96 (314)
T ss_pred CCCeEEEecCCCccEEecccCC-------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEE
Confidence 37798988 5 37766541 012234 44689999999999999999999999999999999998
Q ss_pred cCCC---CCCCCceeeecceeEEEEccEEecC-CceEEecCCCeeEEEEeeeecCCc-eEEEEeccccCCCCCEEEEEEE
Q 045402 193 AAGD---SPNTDGIHIQQSRNVKIRSSSIKTG-DDCISIGRGTNNLWIERVTCGPGH-GISIGSLGKDMDEEGVQNVTVW 267 (396)
Q Consensus 193 ~~~~---~~~~DGi~~~~s~nv~I~n~~i~~~-dD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~~~~~~~~~i~ni~i~ 267 (396)
.... ....+||.+..|++++|++|.++.. |+||.++. +++++|+||+++... |+.+-. ..++.++
T Consensus 97 ~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~ 166 (314)
T TIGR03805 97 WTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVY 166 (314)
T ss_pred eccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEE
Confidence 4321 1356899999999999999999985 56999987 899999999998754 777632 2478899
Q ss_pred eeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 268 KTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 268 n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
++++.+...|+.+...++...-.-+++++++.++.+.
T Consensus 167 ~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 167 NNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred CCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 9999988789988765432222346788888888654
No 21
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=4.6e-11 Score=119.50 Aligned_cols=154 Identities=23% Similarity=0.297 Sum_probs=126.1
Q ss_pred CcceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCC----ceEEecCCCeeEEEEeeeecCCc-e
Q 045402 172 QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGD----DCISIGRGTNNLWIERVTCGPGH-G 246 (396)
Q Consensus 172 ~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d----D~i~~~~~s~ni~i~n~~~~~~~-g 246 (396)
....+.+..|+||++++++|.+++. .++++..|+|++++|.++.+.+ ||+.+.+ ++|++|++|+|..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 3456889999999999999999653 6799999999999999998854 5999999 999999999999876 5
Q ss_pred EEEEeccccC---CCCCEEEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCC
Q 045402 247 ISIGSLGKDM---DEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPG 323 (396)
Q Consensus 247 i~igs~~~~~---~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~ 323 (396)
+.+.+..... .....++|.|+||.|.....++.+.++ ..|.|+||+++|+.|.+...++.|+.....
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~~~~d~GLRikt~~~~------- 381 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVMDNTDRGLRIKTNDGR------- 381 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee---cCCceeEEEEEeeeeccCcceeeeeeeccc-------
Confidence 8887642211 123469999999999976556777777 458899999999999999999999976432
Q ss_pred CCcceEEEeEEEEeEEEecC
Q 045402 324 QVSGVKISDIIYWNIRGTSS 343 (396)
Q Consensus 324 ~~~~~~i~ni~~~ni~~~~~ 343 (396)
++.++||+|+++.+...
T Consensus 382 ---gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 382 ---GGGVRNIVFEDNKMRNV 398 (542)
T ss_pred ---ceeEEEEEEecccccCc
Confidence 36899999999987765
No 22
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=99.33 E-value=9.8e-11 Score=105.87 Aligned_cols=246 Identities=17% Similarity=0.276 Sum_probs=149.4
Q ss_pred HHHHHHHhhhhcCCCCCCCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEE--Ee-ccccccCcc
Q 045402 8 LIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRY--LL-GSVAFKGEC 84 (396)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y--~~-~~i~l~~~~ 84 (396)
+.++.+|.++..+.+.|..+.+.+++.||-.+ |--++|.+|+.+ +.||.+|+|-- -+ ..+.++
T Consensus 12 ~ta~sala~~hsp~~ra~~~~~~vni~dy~~~-----dwiasfkqaf~e------~qtvvvpagl~cenint~ifip--- 77 (464)
T PRK10123 12 LTASSALAFLHTPFARALPARQSVNINDYNPH-----DWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIP--- 77 (464)
T ss_pred hhhhhHHHHhcCHhhhhcCCCceeehhhcCcc-----cHHHHHHHHhcc------CcEEEecCccEecccccceEeC---
Confidence 33444444444455555567789999999864 778999999964 58999999953 23 457776
Q ss_pred cCccEEEEEcCEEEeeccccccCCCcceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEE-EeecceEE
Q 045402 85 QSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSI-TNSNNVSI 163 (396)
Q Consensus 85 ~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~-~~~~nv~i 163 (396)
. +-||.+.|.|++..+ +.++..++| .+.| .+ ..+-+.+.+ ...++..|
T Consensus 78 -~-gktl~v~g~l~gngr-------grfvlqdg~---qv~g-----e~--------------~g~~hnitldvrgsdc~i 126 (464)
T PRK10123 78 -P-GKTLHILGSLRGNGR-------GRFVLQDGS---QVTG-----EE--------------GGSMHNITLDVRGSDCTI 126 (464)
T ss_pred -C-CCeEEEEEEeecCCc-------eeEEEecCC---Eeec-----CC--------------CceeeeEEEeeccCceEE
Confidence 4 789999988886443 334443333 2333 00 001111222 12345667
Q ss_pred eceEEecC-CcceEEEec-----eecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEec-CCceEEecC--CCeeE
Q 045402 164 KGLLSLNS-QMYHIVINR-----CQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKT-GDDCISIGR--GTNNL 234 (396)
Q Consensus 164 ~~v~i~~~-~~~~i~~~~-----~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~~~~--~s~ni 234 (396)
+++.+..- |...|.+.. -+|++|+++++....++--..|+|-+ -..+.|.||.|.. ..|+|.... .-+++
T Consensus 127 kgiamsgfgpvtqiyiggk~prvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnvaindr~i 205 (464)
T PRK10123 127 KGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAINDRDI 205 (464)
T ss_pred eeeeecccCceeEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEEEecccce
Confidence 77666432 223343333 35788888888765443334566654 3778899999987 567776543 12455
Q ss_pred EEE-----eeeecCC---ceEEEEeccc-----cCCCCCEEEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEE
Q 045402 235 WIE-----RVTCGPG---HGISIGSLGK-----DMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVM 301 (396)
Q Consensus 235 ~i~-----n~~~~~~---~gi~igs~~~-----~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~ 301 (396)
+|+ +..|.++ +|+.||-.|. |++.+.++|..+.|++-.++..-+.+... ..-.||||.-+||+-
T Consensus 206 lisdhvie~inctngkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhveng---khfvirnvkaknitp 282 (464)
T PRK10123 206 LISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENG---KHFVIRNIKAKNITP 282 (464)
T ss_pred eeehheheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecCC---cEEEEEeeeccccCC
Confidence 544 4555554 5888876654 33446689999999998888777776532 234466666666654
Q ss_pred e
Q 045402 302 Q 302 (396)
Q Consensus 302 ~ 302 (396)
+
T Consensus 283 d 283 (464)
T PRK10123 283 D 283 (464)
T ss_pred C
Confidence 3
No 23
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=9.6e-10 Score=100.27 Aligned_cols=162 Identities=20% Similarity=0.283 Sum_probs=97.7
Q ss_pred CCCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceeceEEec-e---eEeCCCCccc
Q 045402 61 NESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG-G---ALDAKGTSLW 136 (396)
Q Consensus 61 ~~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G---~idg~g~~~~ 136 (396)
.+|..|++..+.=+..-+.-.++ - .+.|.+.|+|..+. ++ +..+++..+.|++|.| | ++.|
T Consensus 52 ~~g~~v~v~ta~~l~~~~sa~~~--~-t~ii~v~Gti~~s~-ps-----~~k~~iki~sNkTivG~g~~a~~~g------ 116 (345)
T COG3866 52 SGGDIVTVRTANDLETYLSASGK--Y-TVIIVVKGTITAST-PS-----DKKITIKIGSNKTIVGSGADATLVG------ 116 (345)
T ss_pred CCCcEEEEeeHHHHHHHhhccCc--e-EEEEEEcceEeccC-CC-----CceEEEeeccccEEEeeccccEEEe------
Confidence 34566766655322211112221 1 35777888888763 11 1236777788888888 4 2322
Q ss_pred ccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEEcCCC-CCCCCceee-ecceeEEEE
Q 045402 137 ACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGD-SPNTDGIHI-QQSRNVKIR 214 (396)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~-~~~~DGi~~-~~s~nv~I~ 214 (396)
|++.+.+.+||.|+|++|+.... .++-|+|.+ ..++|++|+
T Consensus 117 -------------------------------------~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWID 159 (345)
T COG3866 117 -------------------------------------GGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWID 159 (345)
T ss_pred -------------------------------------ceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEE
Confidence 23333334444555555443221 123477888 567889999
Q ss_pred ccEEec---------CCceEEecCCCeeEEEEeeeecCCc-eEEEEeccccCCCCCEEEEEEEeeEEecC
Q 045402 215 SSSIKT---------GDDCISIGRGTNNLWIERVTCGPGH-GISIGSLGKDMDEEGVQNVTVWKTVFTGT 274 (396)
Q Consensus 215 n~~i~~---------~dD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~~~~~~~~~i~ni~i~n~~~~~~ 274 (396)
+|++.. +|..+.++.++..|+|++|+|...+ ++-+|+.-......+-.+|+++++.|.+.
T Consensus 160 H~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 160 HNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred eeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 998886 2445678888899999999998764 67777653222224457899999999884
No 24
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.98 E-value=1.5e-08 Score=91.22 Aligned_cols=93 Identities=16% Similarity=0.275 Sum_probs=64.8
Q ss_pred ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCC
Q 045402 180 RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEE 259 (396)
Q Consensus 180 ~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~ 259 (396)
.|+|+.++++.+.+. ..+++++||.|+|+++.+.| |++. ++||+|.|+.+. |=.+ ||
T Consensus 135 ~s~ni~id~l~~~Gn--------Y~Fq~~kNvei~ns~l~sKD---AFWn-~eNVtVyDS~i~---GEYL---gW----- 191 (277)
T PF12541_consen 135 NSENIYIDNLVLDGN--------YSFQYCKNVEIHNSKLDSKD---AFWN-CENVTVYDSVIN---GEYL---GW----- 191 (277)
T ss_pred eccceEEeceEEeCC--------EEeeceeeEEEEccEEeccc---cccc-CCceEEEcceEe---eeEE---EE-----
Confidence 345555555555542 34567899999999999876 4666 899999999874 2111 11
Q ss_pred CEEEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCCc
Q 045402 260 GVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQN 306 (396)
Q Consensus 260 ~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~ 306 (396)
..+|+++.||++.+. +|+ -+++|++++|+++.++.-
T Consensus 192 ~SkNltliNC~I~g~-QpL----------CY~~~L~l~nC~~~~tdl 227 (277)
T PF12541_consen 192 NSKNLTLINCTIEGT-QPL----------CYCDNLVLENCTMIDTDL 227 (277)
T ss_pred EcCCeEEEEeEEecc-Ccc----------EeecceEEeCcEeeccee
Confidence 247999999999976 333 456789999999987653
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.75 E-value=1.3e-07 Score=80.70 Aligned_cols=140 Identities=22% Similarity=0.283 Sum_probs=97.1
Q ss_pred eEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCC
Q 045402 152 TLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGT 231 (396)
Q Consensus 152 ~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s 231 (396)
.|.+....+++|++++|.+...+++.+..+..++|++++|.. ...|+.+....++++++|.+.....++.+.. +
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~-~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVSG-S 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECCS--
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEEe-c
Confidence 356677788999999999998999999999999999999998 4578999888999999999998777777774 8
Q ss_pred eeEEEEeeeecCCc--eEEEEeccccCCCCCEEEEEEEeeEEecCC-eEEEEEeecCCCCceEEeEEEEeEEEecCC-cc
Q 045402 232 NNLWIERVTCGPGH--GISIGSLGKDMDEEGVQNVTVWKTVFTGTQ-NGLRIKSWARPSNGFVKGVRFIDAVMQNVQ-NP 307 (396)
Q Consensus 232 ~ni~i~n~~~~~~~--gi~igs~~~~~~~~~i~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~-~~ 307 (396)
.+++|++|.+.... |+.+.. ...+++|++++|.+.. .|+.+.... -.++++++.++.+.. .+
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~g 141 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNG 141 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCccee
Confidence 89999999998653 666621 1347889999999865 788777543 235778888887765 45
Q ss_pred EEEE
Q 045402 308 IIID 311 (396)
Q Consensus 308 i~i~ 311 (396)
+.+.
T Consensus 142 i~~~ 145 (158)
T PF13229_consen 142 IYLI 145 (158)
T ss_dssp EE-T
T ss_pred EEEE
Confidence 5443
No 26
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.70 E-value=3.7e-07 Score=88.96 Aligned_cols=145 Identities=19% Similarity=0.189 Sum_probs=99.8
Q ss_pred eEEEEeecceEEeceEEecCC------cceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEec-CCce
Q 045402 152 TLSITNSNNVSIKGLLSLNSQ------MYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKT-GDDC 224 (396)
Q Consensus 152 ~i~~~~~~nv~i~~v~i~~~~------~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~ 224 (396)
.+.-...++++|++++|.++. ..+|.+..|++++|++++|.++. .-||.++.|+ ..|.++.+.. .+.+
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 555677899999999998765 24789999999999999999842 3578888877 6666666654 4556
Q ss_pred EEecCCCeeEEEEeeeecCCc--eEEEEec------------------------cccCCC---CCEEEEEEEeeEEecCC
Q 045402 225 ISIGRGTNNLWIERVTCGPGH--GISIGSL------------------------GKDMDE---EGVQNVTVWKTVFTGTQ 275 (396)
Q Consensus 225 i~~~~~s~ni~i~n~~~~~~~--gi~igs~------------------------~~~~~~---~~i~ni~i~n~~~~~~~ 275 (396)
|.++. +++.+|+++++.... ||.+... ++++.. ....+++|+++++.+++
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 76666 777777777776532 4444322 111110 12467889999999887
Q ss_pred -eEEEEEeecCCCCceEEeEEEEeEEEecCCc-cEEE
Q 045402 276 -NGLRIKSWARPSNGFVKGVRFIDAVMQNVQN-PIII 310 (396)
Q Consensus 276 -~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~-~i~i 310 (396)
.|+++.+. +|+.|++.++++..+ +++.
T Consensus 262 ~dgI~~nss--------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 262 YSAVRGNSA--------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred cceEEEEcc--------cCcEEECcEeeeeeeeEEEE
Confidence 88888764 346666666666665 5543
No 27
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.67 E-value=7.7e-07 Score=80.26 Aligned_cols=136 Identities=17% Similarity=0.263 Sum_probs=96.9
Q ss_pred EeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEEcC
Q 045402 115 FEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAA 194 (396)
Q Consensus 115 ~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~~~ 194 (396)
|..+++|+|..-.+.-....+|.+..-.-++... ..-..+.+++|+.++++.+... ..+++|+||.|+|.++.+.
T Consensus 94 fR~~~~i~L~nv~~~~A~Et~W~c~~i~l~nv~~-~gdYf~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sK 168 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADETLWNCRGIKLKNVQA-NGDYFFMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSK 168 (277)
T ss_pred hhcccCcEEEeeEeCCCcccCEEeCCeEEEeEEE-eceEeeeeccceEEeceEEeCC----EEeeceeeEEEEccEEecc
Confidence 4457888888866655556677754211001010 1224567788888888888543 4678999999999999985
Q ss_pred CCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCCCEEEEEEEeeEEecC
Q 045402 195 GDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGT 274 (396)
Q Consensus 195 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~ 274 (396)
+ .++.|+||+|.|+.+.+. .++-.++|+++.||++.+.+|+. +++|++++||+|.++
T Consensus 169 D--------AFWn~eNVtVyDS~i~GE----YLgW~SkNltliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~t 225 (277)
T PF12541_consen 169 D--------AFWNCENVTVYDSVINGE----YLGWNSKNLTLINCTIEGTQPLC-----------YCDNLVLENCTMIDT 225 (277)
T ss_pred c--------ccccCCceEEEcceEeee----EEEEEcCCeEEEEeEEeccCccE-----------eecceEEeCcEeecc
Confidence 3 378899999999999852 33333799999999987666654 367999999999987
Q ss_pred CeEE
Q 045402 275 QNGL 278 (396)
Q Consensus 275 ~~gi 278 (396)
..++
T Consensus 226 dlaF 229 (277)
T PF12541_consen 226 DLAF 229 (277)
T ss_pred eeee
Confidence 6554
No 28
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.56 E-value=3.8e-05 Score=71.65 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=89.2
Q ss_pred cceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEeceecEEEEeE
Q 045402 110 DNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGA 189 (396)
Q Consensus 110 ~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~ 189 (396)
+..+... .+++.|+|-+..+.|...-+. ....+.-...+.-.|+...+..+ .++|.+..+.++.|+..
T Consensus 69 G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m----------~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n 136 (408)
T COG3420 69 GSYVTVA-APDVIVEGLTVRGSGRSLPAM----------DAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGN 136 (408)
T ss_pred ccEEEEe-CCCceeeeEEEecCCCCcccc----------cceEEeccCcccceEEccccccc-ceEEEEeccCceEEEee
Confidence 3455554 688999997777776522111 11223334455666777777665 46899999999999999
Q ss_pred EEEcCCC---CCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecC
Q 045402 190 KIIAAGD---SPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGP 243 (396)
Q Consensus 190 ~i~~~~~---~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~ 243 (396)
+|....+ ....+||.++++++..|....+.-+.|||.... +++-.|+++.++.
T Consensus 137 ~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~~ 192 (408)
T COG3420 137 TIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFRD 192 (408)
T ss_pred EEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccchhh
Confidence 9997554 246789999999999999999999999999988 7777788877754
No 29
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.53 E-value=1.8e-06 Score=73.44 Aligned_cols=140 Identities=25% Similarity=0.351 Sum_probs=95.3
Q ss_pred EEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEE
Q 045402 113 LSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKII 192 (396)
Q Consensus 113 i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~ 192 (396)
|.+.+..+++|.+..+...+ ...+.+..+..++|++.+|.+ ...++.+....++.++++++.
T Consensus 3 i~i~~~~~~~i~~~~i~~~~-----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~ 64 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNG-----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTIS 64 (158)
T ss_dssp EEETTCEC-EEESEEEESSS-----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEE
T ss_pred EEEECCcCeEEeeeEEEeCC-----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEE
Confidence 34555677788776665432 346888888889999999999 778999999999999999999
Q ss_pred cCCCCCCCCceeeecceeEEEEccEEecC-CceEEecCCCeeEEEEeeeecCC--ceEEEEeccccCCCCCEEEEEEEee
Q 045402 193 AAGDSPNTDGIHIQQSRNVKIRSSSIKTG-DDCISIGRGTNNLWIERVTCGPG--HGISIGSLGKDMDEEGVQNVTVWKT 269 (396)
Q Consensus 193 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~~-dD~i~~~~~s~ni~i~n~~~~~~--~gi~igs~~~~~~~~~i~ni~i~n~ 269 (396)
... .|+.+..+.+++|++|.+... +.||.+....++++|++|++... .|+.+... .-.+++|++|
T Consensus 65 ~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n 132 (158)
T PF13229_consen 65 DNG-----SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENN 132 (158)
T ss_dssp S-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECE
T ss_pred Ecc-----ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEE
Confidence 842 688888899999999999985 44898874267899999999864 47776442 1347889999
Q ss_pred EEecCC-eEEEEEe
Q 045402 270 VFTGTQ-NGLRIKS 282 (396)
Q Consensus 270 ~~~~~~-~gi~i~~ 282 (396)
++.+.. .|+.+..
T Consensus 133 ~i~~~~~~gi~~~~ 146 (158)
T PF13229_consen 133 TISNNGGNGIYLIS 146 (158)
T ss_dssp EEECESSEEEE-TT
T ss_pred EEEeCcceeEEEEC
Confidence 999864 7776653
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.51 E-value=5.6e-06 Score=76.14 Aligned_cols=113 Identities=23% Similarity=0.230 Sum_probs=91.9
Q ss_pred eEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCC
Q 045402 152 TLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGT 231 (396)
Q Consensus 152 ~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s 231 (396)
.+.+..+.+++|++.++.+. .+++++..+++++|++..+.. +..||.+..+.+.+|+++.+.....||.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 46788899999999999887 788999999999999999997 3478999888877999999988777998877 6
Q ss_pred eeEEEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEecC-CeEEEE
Q 045402 232 NNLWIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTGT-QNGLRI 280 (396)
Q Consensus 232 ~ni~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~-~~gi~i 280 (396)
.+.+|+++++... .|+.+... .+.+|++++|.+. ..|+.+
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEE
Confidence 7788999888743 47777431 4777888888887 788884
No 31
>smart00656 Amb_all Amb_all domain.
Probab=98.50 E-value=5.5e-06 Score=73.46 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=72.2
Q ss_pred eEEEeceecEEEEeEEEEcCCC--CCCCCceeeecceeEEEEccEEecC----------CceEEecCCCeeEEEEeeeec
Q 045402 175 HIVINRCQDVLVEGAKIIAAGD--SPNTDGIHIQQSRNVKIRSSSIKTG----------DDCISIGRGTNNLWIERVTCG 242 (396)
Q Consensus 175 ~i~~~~~~nv~I~~~~i~~~~~--~~~~DGi~~~~s~nv~I~n~~i~~~----------dD~i~~~~~s~ni~i~n~~~~ 242 (396)
++.+..++||.|+|++|+.... ..+.|+|.+..+++|+|++|.+..+ |..+.++.++.++++++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3445556677777777776432 1367999999999999999999986 445677888999999999997
Q ss_pred CCc-eEEEEeccccCCCCCEEEEEEEeeEEecC
Q 045402 243 PGH-GISIGSLGKDMDEEGVQNVTVWKTVFTGT 274 (396)
Q Consensus 243 ~~~-gi~igs~~~~~~~~~i~ni~i~n~~~~~~ 274 (396)
..+ +.-+|+..... .....+|++.++.+.++
T Consensus 113 ~h~~~~liG~~d~~~-~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 113 NHWKVMLLGHSDSDT-DDGKMRVTIAHNYFGNL 144 (190)
T ss_pred cCCEEEEEccCCCcc-ccccceEEEECcEEcCc
Confidence 654 67777632211 12245899999999864
No 32
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.48 E-value=1.9e-05 Score=77.03 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHhhcCCCcEEEEcCcEEEecccccc
Q 045402 46 STEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFK 81 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~~i~l~ 81 (396)
+.++||+||++| .+|++|+++.|+|.-..+.+.
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~ 35 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFK 35 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEE
Confidence 568999999877 679999999999984344443
No 33
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.48 E-value=8.9e-06 Score=74.28 Aligned_cols=169 Identities=20% Similarity=0.244 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEcCcEEEec-----cccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceece
Q 045402 47 TEAFAKAWAAACASNESTIIYVPKGRYLLG-----SVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGV 121 (396)
Q Consensus 47 t~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~-----~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
-+.|++|++.| ..|.+|+|.+|+|... ||.++ + .++|.++..=++ ..++
T Consensus 15 ~~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i~----~-gVtl~G~~~~kG------------------~~~i 68 (246)
T PF07602_consen 15 FKTITKALQAA---QPGDTIQLAPGTYSEATGETFPIIIK----P-GVTLIGNESNKG------------------QIDI 68 (246)
T ss_pred HHHHHHHHHhC---CCCCEEEECCceeccccCCcccEEec----C-CeEEeecccCCC------------------cceE
Confidence 36799999876 6789999999999754 35555 5 788877642111 1123
Q ss_pred EEec-e---eEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecC---CcceEEEeceecEEEEeEEEEcC
Q 045402 122 SIIG-G---ALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNS---QMYHIVINRCQDVLVEGAKIIAA 194 (396)
Q Consensus 122 ~I~G-G---~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~---~~~~i~~~~~~nv~I~~~~i~~~ 194 (396)
.+.| + ++++.+.. .. ...+.+....+.+|+++++.++ ...++.+..+ +.+|+|+++.+.
T Consensus 69 l~~g~~~~~~I~g~~~~-----------~~--~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~ 134 (246)
T PF07602_consen 69 LITGGGTGPTISGGGPD-----------LS--GQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNN 134 (246)
T ss_pred EecCCceEEeEeccCcc-----------cc--ceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECC
Confidence 3332 1 23333320 00 1234555567777777777766 2345555554 666666666652
Q ss_pred CCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecC-CceEEEEeccccCCCCCEEEEEEEeeEEec
Q 045402 195 GDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGP-GHGISIGSLGKDMDEEGVQNVTVWKTVFTG 273 (396)
Q Consensus 195 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~-~~gi~igs~~~~~~~~~i~ni~i~n~~~~~ 273 (396)
..+||.+... ..+....++.|+++.+.. ..|+.+-.. ...++ ..|+|+.+++
T Consensus 135 ----~~~GI~v~g~-----------------~~~~~i~~~vI~GN~~~~~~~Gi~i~~~-----~~~~~-n~I~NN~I~~ 187 (246)
T PF07602_consen 135 ----GREGIFVTGT-----------------SANPGINGNVISGNSIYFNKTGISISDN-----AAPVE-NKIENNIIEN 187 (246)
T ss_pred ----ccccEEEEee-----------------ecCCcccceEeecceEEecCcCeEEEcc-----cCCcc-ceeeccEEEe
Confidence 2344443211 112234566677776664 347776432 12233 3568888887
Q ss_pred CCeEEEEEe
Q 045402 274 TQNGLRIKS 282 (396)
Q Consensus 274 ~~~gi~i~~ 282 (396)
...||.+..
T Consensus 188 N~~Gi~~~~ 196 (246)
T PF07602_consen 188 NNIGIVAIG 196 (246)
T ss_pred CCcCeEeec
Confidence 667877653
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.47 E-value=5.1e-06 Score=76.40 Aligned_cols=135 Identities=21% Similarity=0.196 Sum_probs=111.6
Q ss_pred eEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCC
Q 045402 152 TLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGT 231 (396)
Q Consensus 152 ~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s 231 (396)
.+.+..+++..|++.++.+. ..++.+..+.+++|++.++.. +..||++..+++++|+++.+.....||.+.. +
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-s 87 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMG-S 87 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEc-C
Confidence 57888889999999999765 467899999999999999998 4679999999999999999999889999988 5
Q ss_pred eeEEEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecC-CccEE
Q 045402 232 NNLWIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNV-QNPII 309 (396)
Q Consensus 232 ~ni~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~-~~~i~ 309 (396)
.+.+|+++++... .||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+. ..++.
T Consensus 88 ~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 88 SNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccceE
Confidence 5559999999865 4776632 23578999999988899999753 4577888888877 67777
Q ss_pred E
Q 045402 310 I 310 (396)
Q Consensus 310 i 310 (396)
+
T Consensus 151 ~ 151 (236)
T PF05048_consen 151 F 151 (236)
T ss_pred E
Confidence 3
No 35
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.44 E-value=6e-06 Score=81.55 Aligned_cols=173 Identities=17% Similarity=0.129 Sum_probs=100.9
Q ss_pred eEEEeceecEEEEeEEEEcCCCCCCCCceeeecce----eEEEEccEEec----CCceEEecCCCeeEEEEeeeecCCc-
Q 045402 175 HIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSR----NVKIRSSSIKT----GDDCISIGRGTNNLWIERVTCGPGH- 245 (396)
Q Consensus 175 ~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~----nv~I~n~~i~~----~dD~i~~~~~s~ni~i~n~~~~~~~- 245 (396)
++....++++.+++++|..+.. ..+++.+.. +..|+|.+... ..||+.+.. +-+|+||.++..+
T Consensus 322 ~~~~~g~q~~~~~GiTI~~pP~----~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~---nS~i~dcF~h~nDD 394 (582)
T PF03718_consen 322 HISANGGQTLTCEGITINDPPF----HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP---NSTIRDCFIHVNDD 394 (582)
T ss_dssp ECS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B--T---T-EEEEEEEEESS-
T ss_pred hhccCCcceEEEEeeEecCCCc----ceEEecCCccccccceeeceeeeeeEEeccCCccccC---CCeeeeeEEEecCc
Confidence 3446678899999999998653 347776433 58889988775 478999876 4488999998665
Q ss_pred eEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCC---------ccEEEE-eecC
Q 045402 246 GISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQ---------NPIIID-QNYC 315 (396)
Q Consensus 246 gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~---------~~i~i~-~~~~ 315 (396)
+|++.. .++.++|+++....+|--|...+ ....++||.|+|+.+-... .+|.-. ..|.
T Consensus 395 ~iKlYh----------S~v~v~~~ViWk~~Ngpiiq~GW--~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~ 462 (582)
T PF03718_consen 395 AIKLYH----------SNVSVSNTVIWKNENGPIIQWGW--TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYD 462 (582)
T ss_dssp SEE--S----------TTEEEEEEEEEE-SSS-SEE--C--S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTT
T ss_pred hhheee----------cCcceeeeEEEecCCCCeEEeec--cccccCceEEeeeEEEeeeeecccCCCCceeEecccccc
Confidence 687732 38899999999866554343222 3456999999999996542 233332 3442
Q ss_pred CCCCCCCCCCcceEEEeEEEEeEEEecCCCceEEEecCCCCceecEEEEeEEEE
Q 045402 316 PHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLS 369 (396)
Q Consensus 316 ~~~~~~~~~~~~~~i~ni~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~ 369 (396)
+ ........+...|++++|+|++..+.- +..+.-.|...-+|+.++|+.+.
T Consensus 463 ~-~~s~~~adp~~ti~~~~~~nv~~EG~~--~~l~ri~plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 463 D-MASTKTADPSTTIRNMTFSNVRCEGMC--PCLFRIYPLQNYDNLVIKNVHFE 513 (582)
T ss_dssp S--SSS--BEEEEEEEEEEEEEEEEECCE---ECEEE--SEEEEEEEEEEEEEC
T ss_pred c-ccCCCCCCcccceeeEEEEeEEEeccc--ceeEEEeecCCCcceEEEEeecc
Confidence 1 111223334568999999999998865 44444445566677888888886
No 36
>PLN02176 putative pectinesterase
Probab=98.34 E-value=0.00034 Score=67.01 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 46 STEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
|-..||+||+++..... --+|+|++|+|... +.++.. |. +++|.++|
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~Ip~~-k~-~vtl~G~g 97 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNGIYREK-VTIPKE-KG-YIYMQGKG 97 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCcEEEEE-EEECCC-Cc-cEEEEEcC
Confidence 57889999987633221 23689999999865 333211 24 89999886
No 37
>PLN02634 probable pectinesterase
Probab=98.31 E-value=0.00026 Score=68.14 Aligned_cols=51 Identities=27% Similarity=0.272 Sum_probs=33.6
Q ss_pred CCCcccHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 41 NGVIDSTEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 41 dg~tddt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
||. -|-..||+||+++..... --+|+|.+|+|... +.++.. |. +++|+++|
T Consensus 63 dGs-Gdf~TIQaAIda~P~~~~~r~vI~Ik~GvY~Ek-V~Ip~~-k~-~ItL~G~g 114 (359)
T PLN02634 63 NGH-GDFRSVQDAVDSVPKNNTMSVTIKINAGFYREK-VVVPAT-KP-YITFQGAG 114 (359)
T ss_pred CCC-CCccCHHHHHhhCcccCCccEEEEEeCceEEEE-EEEcCC-CC-eEEEEecC
Confidence 443 357889999997632211 24799999999865 233211 24 89999887
No 38
>PLN02480 Probable pectinesterase
Probab=98.31 E-value=0.0004 Score=66.79 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=113.6
Q ss_pred ccHHHHHHHHHHHhhcCCCc----EEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceec
Q 045402 45 DSTEAFAKAWAAACASNEST----IIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSG 120 (396)
Q Consensus 45 ddt~aiq~Ai~~a~~~~~g~----~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 120 (396)
.|-..||+||+++ +.+. +|+|.+|+|.. .+.++.. |. +++|.+++. +.
T Consensus 58 g~f~TIQ~AIdaa---p~~~~~~~~I~Ik~GvY~E-~V~I~~~-kp-~ItL~G~g~----------------------~~ 109 (343)
T PLN02480 58 GDFTSVQSAIDAV---PVGNSEWIIVHLRKGVYRE-KVHIPEN-KP-FIFMRGNGK----------------------GR 109 (343)
T ss_pred CCcccHHHHHhhC---ccCCCceEEEEEcCcEEEE-EEEECCC-Cc-eEEEEecCC----------------------CC
Confidence 5688999999976 2333 48899999984 3445311 13 788877651 11
Q ss_pred eEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCC---------cceEEE-eceecEEEEeEE
Q 045402 121 VSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQ---------MYHIVI-NRCQDVLVEGAK 190 (396)
Q Consensus 121 v~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~---------~~~i~~-~~~~nv~I~~~~ 190 (396)
..|.+ +... . .+ ... .......++++++|++|.|.. ..++.+ ..++.+.+.||+
T Consensus 110 TvI~~-----~~~~--~------~~--~~s-aTvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~ 173 (343)
T PLN02480 110 TSIVW-----SQSS--S------DN--AAS-ATFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCA 173 (343)
T ss_pred eEEEc-----cccc--c------CC--CCc-eEEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeE
Confidence 11111 0000 0 00 001 122334577888888888762 134444 367889999999
Q ss_pred EEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC-------ce-EEEEeccccCCCCCEE
Q 045402 191 IIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG-------HG-ISIGSLGKDMDEEGVQ 262 (396)
Q Consensus 191 i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~-------~g-i~igs~~~~~~~~~i~ 262 (396)
+....| -+-.. ...-..+||.|...=|-| ++ .-...++||++..- .| +.-- +.. ...-.
T Consensus 174 f~G~QD-----TLy~~-~gR~yf~~C~IeG~VDFI-FG--~g~a~fe~C~i~s~~~~~~~~~G~ITA~--~r~--~~~~~ 240 (343)
T PLN02480 174 FYSTHN-----TLFDY-KGRHYYHSCYIQGSIDFI-FG--RGRSIFHNCEIFVIADRRVKIYGSITAH--NRE--SEDNS 240 (343)
T ss_pred Eecccc-----eeEeC-CCCEEEEeCEEEeeeeEE-cc--ceeEEEEccEEEEecCCCCCCceEEEcC--CCC--CCCCC
Confidence 987443 23222 345778888888754422 22 35778889987631 23 2221 111 12334
Q ss_pred EEEEEeeEEecCCeEEEEE-eecCCCCceEEeEEEEeEEEecC
Q 045402 263 NVTVWKTVFTGTQNGLRIK-SWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 263 ni~i~n~~~~~~~~gi~i~-~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
...|.||++.+.. .+++. .| +....+.|.|..|.+.
T Consensus 241 GfvF~~C~i~g~g-~~yLGRPW-----~~ya~vVf~~t~l~~~ 277 (343)
T PLN02480 241 GFVFIKGKVYGIG-EVYLGRAK-----GAYSRVIFAKTYLSKT 277 (343)
T ss_pred EEEEECCEEcccC-ceeeecCC-----CCcceEEEEecccCCe
Confidence 6889999998742 34444 22 3367788888888764
No 39
>PLN02497 probable pectinesterase
Probab=98.31 E-value=0.00027 Score=67.47 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 46 STEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
|-..||+||+++..... --+|+|.+|+|+.. +.++.. |. +++|.++|
T Consensus 43 df~TIq~AIdavP~~~~~~~~I~Ik~G~Y~Ek-V~Ip~~-k~-~itl~G~g 90 (331)
T PLN02497 43 NFTTIQSAIDSVPSNNKHWFCINVKAGLYREK-VKIPYD-KP-FIVLVGAG 90 (331)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCcEEEEE-EEecCC-CC-cEEEEecC
Confidence 47789999987633221 13699999999765 233211 24 89998876
No 40
>PLN02773 pectinesterase
Probab=98.30 E-value=0.00016 Score=68.67 Aligned_cols=47 Identities=23% Similarity=0.110 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 46 STEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
|-..||+||+++..... --+|+|.+|+|... |.++.. |. +++|.+++
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G~Y~E~-V~I~~~-k~-~itl~G~~ 63 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPGVYRQP-VYVPKT-KN-LITLAGLS 63 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCceEEEE-EEECcC-Cc-cEEEEeCC
Confidence 47789999997733222 23789999999854 444321 13 79998875
No 41
>smart00656 Amb_all Amb_all domain.
Probab=98.26 E-value=5.2e-05 Score=67.26 Aligned_cols=134 Identities=17% Similarity=0.194 Sum_probs=91.5
Q ss_pred eEEEEeecceEEeceEEecCC------cceEEEeceecEEEEeEEEEcCCC----CCCCCce-eee-cceeEEEEccEEe
Q 045402 152 TLSITNSNNVSIKGLLSLNSQ------MYHIVINRCQDVLVEGAKIIAAGD----SPNTDGI-HIQ-QSRNVKIRSSSIK 219 (396)
Q Consensus 152 ~i~~~~~~nv~i~~v~i~~~~------~~~i~~~~~~nv~I~~~~i~~~~~----~~~~DGi-~~~-~s~nv~I~n~~i~ 219 (396)
.|.+..++||.|++++|.+.. .++|.+..+++|.|++|++..... ....||. ++. .+.+++|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 456667889999999998753 368999999999999999997410 1124554 443 5799999999998
Q ss_pred cCCceEEecCCCe-------eEEEEeeeecCCce--EEEEeccccCCCCCEEEEEEEeeEEecCC-eEEEEEeecCCCCc
Q 045402 220 TGDDCISIGRGTN-------NLWIERVTCGPGHG--ISIGSLGKDMDEEGVQNVTVWKTVFTGTQ-NGLRIKSWARPSNG 289 (396)
Q Consensus 220 ~~dD~i~~~~~s~-------ni~i~n~~~~~~~g--i~igs~~~~~~~~~i~ni~i~n~~~~~~~-~gi~i~~~~~~~~g 289 (396)
..+-+.-++++.+ +|++.+|.+.+..+ -.+. .+ .+++-|+.+++.. +++.+...
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r--------~g--~~hv~NN~~~n~~~~~~~~~~~------ 176 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR--------FG--YVHVYNNYYTGWTSYAIGGRMG------ 176 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc--------CC--EEEEEeeEEeCcccEeEecCCC------
Confidence 8766676766422 69999998865321 2221 11 6889999998764 55544321
Q ss_pred eEEeEEEEeEEEec
Q 045402 290 FVKGVRFIDAVMQN 303 (396)
Q Consensus 290 ~v~nI~~~ni~~~~ 303 (396)
..|.+|+..+++
T Consensus 177 --~~v~~E~N~F~~ 188 (190)
T smart00656 177 --ATILSEGNYFEA 188 (190)
T ss_pred --cEEEEECeEEEC
Confidence 146666666654
No 42
>PLN02682 pectinesterase family protein
Probab=98.25 E-value=0.00032 Score=67.79 Aligned_cols=48 Identities=21% Similarity=0.152 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 45 DSTEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 45 ddt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
-|-..||+||+++..... --+|+|.+|+|... +.++.. |+ +++|+++|
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~Ek-V~Ip~~-k~-~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAGTYREK-VNIPPL-KA-YITLEGAG 128 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCceeeEE-EEEecc-Cc-eEEEEecC
Confidence 357789999997632221 24799999999754 333211 25 89999886
No 43
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=98.21 E-value=0.00039 Score=70.19 Aligned_cols=207 Identities=14% Similarity=0.244 Sum_probs=101.0
Q ss_pred CCCcccHHHHHHHHHHHhhc--CCCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEece
Q 045402 41 NGVIDSTEAFAKAWAAACAS--NESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGV 118 (396)
Q Consensus 41 dg~tddt~aiq~Ai~~a~~~--~~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~ 118 (396)
||. -|-..||+||+++... ..--+|+|.+|+|... +.++.. |. +++|.++|.
T Consensus 232 dGs-G~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-nItl~G~g~---------------------- 285 (529)
T PLN02170 232 DGS-GTHKTIGEALLSTSLESGGGRTVIYLKAGTYHEN-LNIPTK-QK-NVMLVGDGK---------------------- 285 (529)
T ss_pred CCC-CchhhHHHHHHhcccccCCceEEEEEeCCeeEEE-EecCCC-Cc-eEEEEEcCC----------------------
Confidence 443 3578899999864221 1235799999999854 333221 24 899998871
Q ss_pred eceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEc
Q 045402 119 SGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIA 193 (396)
Q Consensus 119 ~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~ 193 (396)
+...|+|..-.+.| |.. -..+-.....+++..+|++|.|... .++.+. ..+...+.+|++..
T Consensus 286 ~~TiIt~~~~~~~g---~~T----------~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~G 352 (529)
T PLN02170 286 GKTVIVGSRSNRGG---WTT----------YQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEG 352 (529)
T ss_pred CCeEEEeCCcCCCC---Ccc----------ccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEec
Confidence 11111110000000 000 0112334456778888888887632 222222 45667777777776
Q ss_pred CCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC-----ceEEEEeccccCCCCCEEEEEEEe
Q 045402 194 AGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG-----HGISIGSLGKDMDEEGVQNVTVWK 268 (396)
Q Consensus 194 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~-----~gi~igs~~~~~~~~~i~ni~i~n 268 (396)
..| -+..+. ..-..++|.|...=|-| + |.....++||.+..- .| .|-..+. .+...-..+.|.|
T Consensus 353 yQD-----TLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avFq~C~I~~~~~~~~~g-~ITAq~R-~~~~~~~Gfvf~~ 421 (529)
T PLN02170 353 YQD-----SLYTHS-KRQFYRETDITGTVDFI-F--GNSAVVFQSCNIAARKPSGDRN-YVTAQGR-SDPNQNTGISIHN 421 (529)
T ss_pred cCC-----cceeCC-CCEEEEeeEEcccccee-c--ccceEEEeccEEEEecCCCCce-EEEecCC-CCCCCCceEEEEe
Confidence 332 222222 33455677766543322 1 224566667766421 12 1111111 1112234566777
Q ss_pred eEEecCCeEEEEE-eecCCCCceEEeEEEEeEEEec
Q 045402 269 TVFTGTQNGLRIK-SWARPSNGFVKGVRFIDAVMQN 303 (396)
Q Consensus 269 ~~~~~~~~gi~i~-~~~~~~~g~v~nI~~~ni~~~~ 303 (396)
|++.... -.+++ .| ..-..+.|.+..|.+
T Consensus 422 C~it~~~-~~yLGRPW-----~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 422 CRITAES-MTYLGRPW-----KEYSRTVVMQSFIDG 451 (529)
T ss_pred eEEecCC-ceeeeCCC-----CCCceEEEEecccCC
Confidence 7776542 22332 22 123456666666654
No 44
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.20 E-value=6.2e-06 Score=73.78 Aligned_cols=76 Identities=30% Similarity=0.407 Sum_probs=53.9
Q ss_pred CCCCceeeecceeEEEEccEEecC---------CceEEecCCCeeEEEEeeeecCCc-eEEEEeccccCCCCCEEEEEEE
Q 045402 198 PNTDGIHIQQSRNVKIRSSSIKTG---------DDCISIGRGTNNLWIERVTCGPGH-GISIGSLGKDMDEEGVQNVTVW 267 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~---------dD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~~~~~~~~~i~ni~i~ 267 (396)
...|+|.+..+++|+|++|.+..+ |..+.++.++.+|+|++|.|.+.+ +..+|+......... .++++.
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~h 151 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFH 151 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEE
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEE
Confidence 467899999999999999999876 445788888999999999997643 455666422222334 899999
Q ss_pred eeEEecC
Q 045402 268 KTVFTGT 274 (396)
Q Consensus 268 n~~~~~~ 274 (396)
++.+.++
T Consensus 152 hN~f~~~ 158 (200)
T PF00544_consen 152 HNYFANT 158 (200)
T ss_dssp S-EEEEE
T ss_pred eEEECch
Confidence 9999864
No 45
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.20 E-value=0.0004 Score=68.13 Aligned_cols=53 Identities=25% Similarity=0.194 Sum_probs=34.1
Q ss_pred cCCCCcccHHHHHHHHHHHhhcCC--CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 39 KGNGVIDSTEAFAKAWAAACASNE--STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 39 ~~dg~tddt~aiq~Ai~~a~~~~~--g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
.+||.. |-..||+||+++..... --+|+|.+|+|... |.++.. |. +++|+++|
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~Ek-V~Ip~~-kp-~ItL~G~G 141 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQGT-VYVPAA-AP-PITLYGTG 141 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeEEE-EEeCCC-Cc-eEEEEecC
Confidence 345532 46789999986532211 24789999999865 334321 24 89999875
No 46
>PLN02665 pectinesterase family protein
Probab=98.09 E-value=0.0014 Score=63.49 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 46 STEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
|-..||+||+++.+... --+|+|.+|+|... +.++.. |. +++|++++
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~GvY~Ek-V~Ip~~-kp-~Itl~G~~ 126 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPGEYNEK-ITIDRS-KP-FVTLYGSP 126 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCcEEEEE-EEecCC-CC-EEEEEecC
Confidence 57789999987633221 23688999999854 333211 24 88888875
No 47
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=98.07 E-value=0.00054 Score=70.57 Aligned_cols=209 Identities=15% Similarity=0.190 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceeceEEe
Q 045402 46 STEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSII 124 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
|-..||+||+++..... --+|+|.+|+|....+.++.. |. |++|.++|. +...|+
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k~-ni~l~G~g~----------------------~~TiIt 338 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRK-KT-NLMFIGDGK----------------------GKTVIT 338 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCC-Cc-eEEEEecCC----------------------CCeEEe
Confidence 47789999987633221 247899999998854444322 24 899988871 011111
Q ss_pred ce--eEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCCC
Q 045402 125 GG--ALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 GG--~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~ 197 (396)
|+ ..++.+ .+ ..+-.....+++..+|++|.|... .++.+. ..+...+.+|++....|
T Consensus 339 ~~~~~~~~~~-t~--------------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QD- 402 (587)
T PLN02484 339 GGKSIFDNLT-TF--------------HTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQD- 402 (587)
T ss_pred cCCcccCCCc-cc--------------ceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCc-
Confidence 10 000000 00 012233456777788888877532 233333 46777777777776433
Q ss_pred CCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC------ceEEEEeccccCCCCCEEEEEEEeeEE
Q 045402 198 PNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG------HGISIGSLGKDMDEEGVQNVTVWKTVF 271 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~~~~~~~~~i~ni~i~n~~~ 271 (396)
-+..+ +..-..++|.|...=|-| .|.....++||++..- .|. |-..+. .+...-..+.|.||++
T Consensus 403 ----TLy~~-~~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~~~~~~~~~~~-ITAq~r-~~~~~~~G~vf~~c~i 472 (587)
T PLN02484 403 ----TLYVH-SNRQFFRECDIYGTVDFI---FGNAAVVLQNCSIYARKPMAQQKNT-ITAQNR-KDPNQNTGISIHACRI 472 (587)
T ss_pred ----ccccC-CCcEEEEecEEEecccee---cccceeEEeccEEEEecCCCCCceE-EEecCC-CCCCCCcEEEEEeeEE
Confidence 22222 234567777777643322 2234667777776521 121 111111 1122345677778877
Q ss_pred ecCCeEE----EEEeecCCCCceEEeEEEEeEEEecC
Q 045402 272 TGTQNGL----RIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 272 ~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
.....-. ..+.+-|.+=.....+.|.+..|.+.
T Consensus 473 ~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~ 509 (587)
T PLN02484 473 LAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDH 509 (587)
T ss_pred ecCCccccccCccceeccCCCCCCceEEEEecccCCe
Confidence 7532100 00111111112345666777666653
No 48
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.0012 Score=60.97 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=83.6
Q ss_pred cceEEeceEEecCC-----cceEEE-eceecEEEEeEEEEcCCC---CCCCCc-eeee-cceeEEEEccEEecCCceEEe
Q 045402 159 NNVSIKGLLSLNSQ-----MYHIVI-NRCQDVLVEGAKIIAAGD---SPNTDG-IHIQ-QSRNVKIRSSSIKTGDDCISI 227 (396)
Q Consensus 159 ~nv~i~~v~i~~~~-----~~~i~~-~~~~nv~I~~~~i~~~~~---~~~~DG-i~~~-~s~nv~I~n~~i~~~dD~i~~ 227 (396)
.||.|+|++|...+ ++.|.+ ...+|+.|+++++..... ....|| +++. .+..|+|++|+|..++-..-+
T Consensus 125 ~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~ 204 (345)
T COG3866 125 GNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLL 204 (345)
T ss_pred CcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeee
Confidence 45555555555443 456777 688899999999987332 112344 3443 578899999999998777766
Q ss_pred cCC--------CeeEEEEeeeecCC--ce--EEEEeccccCCCCCEEEEEEEeeEEecCC-eEEEEEeecCCCCceEEeE
Q 045402 228 GRG--------TNNLWIERVTCGPG--HG--ISIGSLGKDMDEEGVQNVTVWKTVFTGTQ-NGLRIKSWARPSNGFVKGV 294 (396)
Q Consensus 228 ~~~--------s~ni~i~n~~~~~~--~g--i~igs~~~~~~~~~i~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~v~nI 294 (396)
++. -.+|++.+|.|.+. .+ +++| -+++-|+++++.. .|+.+.. |.--.|
T Consensus 205 G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG------------~vHvyNNYy~~~~~~g~a~~i------G~~Aki 266 (345)
T COG3866 205 GSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG------------MVHVYNNYYEGNPKFGVAITI------GTSAKI 266 (345)
T ss_pred ccCCcccccCCceeEEEeccccccccccCCceEee------------EEEEeccccccCcccceEEee------ccceEE
Confidence 652 24599999999864 22 5554 4567777777532 4443321 112237
Q ss_pred EEEeEEEecCCccEE
Q 045402 295 RFIDAVMQNVQNPII 309 (396)
Q Consensus 295 ~~~ni~~~~~~~~i~ 309 (396)
..|+..+++...++.
T Consensus 267 yvE~NyF~~~~~~~~ 281 (345)
T COG3866 267 YVENNYFENGSEGLG 281 (345)
T ss_pred EEecceeccCCCCce
Confidence 777777776554443
No 49
>PLN02916 pectinesterase family protein
Probab=98.01 E-value=0.00077 Score=67.73 Aligned_cols=148 Identities=15% Similarity=0.134 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHhhc----CCCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceece
Q 045402 46 STEAFAKAWAAACAS----NESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGV 121 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~----~~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
|-..||+||+++.+. ..--+|+|.+|+|... +.++.. |. +++|.++|. ...
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~G~g~----------------------~~T 252 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAGVYNEK-VEIDRH-MK-NVMFVGDGM----------------------DKT 252 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCceeeEE-EEecCC-Cc-eEEEEecCC----------------------CCc
Confidence 567899999876321 1124799999999854 333321 24 899988871 011
Q ss_pred EEece--eEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcC
Q 045402 122 SIIGG--ALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAA 194 (396)
Q Consensus 122 ~I~GG--~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~ 194 (396)
.|++. .-+|.+ . -..+-.....+++..+|++|.|... .++.+. .++...+.+|+|...
T Consensus 253 iIt~~~~~~~g~~-T--------------~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~ 317 (502)
T PLN02916 253 IITNNRNVPDGST-T--------------YSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGY 317 (502)
T ss_pred EEEeCCccCCCCc-c--------------eeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecc
Confidence 11110 001100 0 0112233445677788888877532 222222 456667777777763
Q ss_pred CCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeec
Q 045402 195 GDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCG 242 (396)
Q Consensus 195 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~ 242 (396)
. |-+.... ..-..++|.|...=|-| + |.....++||.+.
T Consensus 318 Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avFq~C~I~ 356 (502)
T PLN02916 318 Q-----DTLFVHS-LRQFYRDCHIYGTIDFI-F--GDAAVVFQNCDIF 356 (502)
T ss_pred C-----ceeEeCC-CCEEEEecEEeccccee-c--cCceEEEecCEEE
Confidence 3 2232222 33456666666543322 1 2345666666654
No 50
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.99 E-value=0.00071 Score=69.29 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHhhcC--CCcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 46 STEAFAKAWAAACASN--ESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~--~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
|-..||+||+++.... .--+|+|.+|+|... +.++.. |. +++|.++|
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E~-V~i~~~-k~-~v~l~G~g 300 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEET-VRVPLE-KK-NVVFLGDG 300 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCceEEee-eeecCC-Cc-cEEEEecC
Confidence 4678999998773311 224899999999864 333211 24 89998887
No 51
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.97 E-value=0.0011 Score=67.16 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceeceEEe
Q 045402 46 STEAFAKAWAAACASN-ESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSII 124 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~-~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-..||+||+++.... .--+|+|.+|+|... +.++.. |. +++|+++|. ....|+
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~itl~G~g~----------------------~~TiIt 283 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGGEYFEN-VELPKK-KT-MIMFIGDGI----------------------GKTVIK 283 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCceEEEE-EEecCC-Cc-eEEEEEcCC----------------------CCcEEE
Confidence 5778999998763321 124799999999854 444322 24 899988872 001111
Q ss_pred c--eeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCCC
Q 045402 125 G--GALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--G~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~ 197 (396)
+ -..+| |... ..+-.....+++..+|++|.|... .++.+. .++...+.+|++....|
T Consensus 284 ~~~~~~dg-----~~T~----------~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD- 347 (530)
T PLN02933 284 ANRSRIDG-----WSTF----------QTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQD- 347 (530)
T ss_pred eCCccCCC-----Cccc----------cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEeccc-
Confidence 1 00011 0000 112234456778888888887532 233333 46677777777776433
Q ss_pred CCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeec
Q 045402 198 PNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCG 242 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~ 242 (396)
-+..+. ..-..++|.|...=|-| + |.....++||.+.
T Consensus 348 ----TLy~~~-~Rqyy~~C~IeGtVDFI-F--G~a~avFq~C~i~ 384 (530)
T PLN02933 348 ----TLYVHS-AKQFYRECDIYGTIDFI-F--GNAAVVFQNCSLY 384 (530)
T ss_pred ----ccccCC-CceEEEeeEEeccccee-c--cCceEEEeccEEE
Confidence 222222 33466777777543322 2 2345667777664
No 52
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.93 E-value=0.0012 Score=67.35 Aligned_cols=203 Identities=15% Similarity=0.177 Sum_probs=100.0
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceeceEEe
Q 045402 46 STEAFAKAWAAACASN-ESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSII 124 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~-~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
|-..||+||+++.... +--+|+|.+|+|...- .++.. |. +++|.++|. +...|+
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~V-~I~~~-k~-~i~l~G~g~----------------------~~tiIt 297 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKGVYKENI-DMKKK-KT-NIMLVGDGI----------------------GQTVVT 297 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCeeeEEE-eccCC-Cc-eEEEEEcCC----------------------CCeEEE
Confidence 4678999998763322 2348999999997652 22211 24 888888861 011111
Q ss_pred ceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCCCCC
Q 045402 125 GGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDSPN 199 (396)
Q Consensus 125 GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~ 199 (396)
+..-...| |.. -..+-.....+++..+|++|.|... ..+.+. ..+.+.+.+|+|....|
T Consensus 298 ~~~~~~~g---~~T----------~~saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QD--- 361 (537)
T PLN02506 298 GNRNFMQG---WTT----------FRTATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQD--- 361 (537)
T ss_pred eCccccCC---CCc----------ccceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccc---
Confidence 10000001 000 0112234556788888888887632 222222 45667777777776332
Q ss_pred CCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC------ceEEEEeccccCCCCCEEEEEEEeeEEec
Q 045402 200 TDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG------HGISIGSLGKDMDEEGVQNVTVWKTVFTG 273 (396)
Q Consensus 200 ~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~~~~~~~~~i~ni~i~n~~~~~ 273 (396)
-+..+. ..-..++|.|...=|-| ++ .....++||.+..- .| .|-..+.. +...-..+.|.||++..
T Consensus 362 --TLy~~~-~rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~r~~~~~~~~-~iTA~~r~-~~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 362 --TLYAHS-LRQFYRECEIYGTIDFI-FG--NGAAVLQNCKIYTRVPLPLQKV-TITAQGRK-SPHQSTGFSIQDSYVLA 433 (537)
T ss_pred --cceecC-CceEEEeeEEecccceE-cc--CceeEEeccEEEEccCCCCCCc-eEEccCCC-CCCCCcEEEEEcCEEcc
Confidence 222222 33466677766543322 22 24566777766421 12 11111111 11223456677777765
Q ss_pred CCeEEEEE-eecCCCCceEEeEEEEeEEEec
Q 045402 274 TQNGLRIK-SWARPSNGFVKGVRFIDAVMQN 303 (396)
Q Consensus 274 ~~~gi~i~-~~~~~~~g~v~nI~~~ni~~~~ 303 (396)
. ...+++ .| +....+.|.+..|.+
T Consensus 434 ~-~~~yLGRPW-----~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 434 T-QPTYLGRPW-----KQYSRTVFMNTYMSQ 458 (537)
T ss_pred C-CceEEecCC-----CCCceEEEEecCCCC
Confidence 3 223333 22 224556666666655
No 53
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.93 E-value=0.001 Score=68.25 Aligned_cols=178 Identities=16% Similarity=0.168 Sum_probs=92.6
Q ss_pred cHHHHHHHHHHHhhcC----CCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceece
Q 045402 46 STEAFAKAWAAACASN----ESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGV 121 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~----~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
|-..||+||+++.... .--+|+|.+|+|... +.++.. |. +++|.++|. ...
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~----------------------~~T 315 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEY-VSIPKN-KK-YLMMIGDGI----------------------NQT 315 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEEE-EEecCC-Cc-eEEEEecCC----------------------CCc
Confidence 4778999998763321 113799999999864 333221 24 899988871 111
Q ss_pred EEec--eeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcC
Q 045402 122 SIIG--GALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAA 194 (396)
Q Consensus 122 ~I~G--G~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~ 194 (396)
.|+| -..+| |... +. +-.....+++..+|++|.|... .++.+. .++...+.+|+|...
T Consensus 316 iIt~~~~~~~g-----~~T~---------~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~ 380 (566)
T PLN02713 316 VITGNRSVVDG-----WTTF---------NS-ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAY 380 (566)
T ss_pred EEEcCCcccCC-----Cccc---------cc-eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccC
Confidence 1111 00111 1000 11 2223345788888888888532 223222 566777777777763
Q ss_pred CCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC------ceEEEEeccccCCCCCEEEEEEEe
Q 045402 195 GDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG------HGISIGSLGKDMDEEGVQNVTVWK 268 (396)
Q Consensus 195 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~~~~~~~~~i~ni~i~n 268 (396)
. |-+..+. ..-..++|.|...=|-| + |.....++||.+... .| .|-..+.. +...-..+.|.|
T Consensus 381 Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~~~~~~~~~~-~iTAq~r~-~~~~~~G~vf~~ 449 (566)
T PLN02713 381 Q-----DTLYTHS-LRQFYRECDIYGTVDFI-F--GNAAVVFQNCNLYPRLPMQGQFN-TITAQGRT-DPNQNTGTSIQN 449 (566)
T ss_pred C-----cceEECC-CCEEEEeeEEeccccee-c--ccceEEEeccEEEEecCCCCCcc-eeeecCCC-CCCCCCEEEEEc
Confidence 3 3333332 34567777776543322 2 234667777776421 12 11111111 122334677777
Q ss_pred eEEecC
Q 045402 269 TVFTGT 274 (396)
Q Consensus 269 ~~~~~~ 274 (396)
|++...
T Consensus 450 c~i~~~ 455 (566)
T PLN02713 450 CTIKAA 455 (566)
T ss_pred CEEecC
Confidence 777754
No 54
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.92 E-value=0.0016 Score=66.56 Aligned_cols=181 Identities=15% Similarity=0.182 Sum_probs=94.7
Q ss_pred CCCcccHHHHHHHHHHHhhcCC----CcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEe
Q 045402 41 NGVIDSTEAFAKAWAAACASNE----STIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFE 116 (396)
Q Consensus 41 dg~tddt~aiq~Ai~~a~~~~~----g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~ 116 (396)
||. -+-..||+||+++..... --+|||.+|+|... +.++.. |. +++|.++|.
T Consensus 230 dGs-G~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~E~-V~i~~~-k~-~i~l~G~g~-------------------- 285 (538)
T PLN03043 230 YGT-DNFTTITDAIAAAPNNSKPEDGYFVIYAREGYYEEY-VVVPKN-KK-NIMLIGDGI-------------------- 285 (538)
T ss_pred CCC-CCCcCHHHHHHhccccCCCCcceEEEEEcCeeeEEE-EEeCCC-CC-cEEEEecCC--------------------
Confidence 443 347789999987633211 13799999999864 333211 24 899988871
Q ss_pred ceeceEEec--eeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeE
Q 045402 117 GVSGVSIIG--GALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGA 189 (396)
Q Consensus 117 ~~~nv~I~G--G~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~ 189 (396)
....|+| -..|| |... ..+-.....+++..+|++|.|... .++.+. .++...+.+|
T Consensus 286 --~~tiIt~~~~~~dg-----~~T~----------~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C 348 (538)
T PLN03043 286 --NKTIITGNHSVVDG-----WTTF----------NSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRC 348 (538)
T ss_pred --CCeEEEeCCccCCC-----Cccc----------cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEee
Confidence 1111111 00111 1100 112233456788888888887532 233333 4566777777
Q ss_pred EEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC------ce-EEEEeccccCCCCCEE
Q 045402 190 KIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG------HG-ISIGSLGKDMDEEGVQ 262 (396)
Q Consensus 190 ~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~------~g-i~igs~~~~~~~~~i~ 262 (396)
+|....| -+..+ +..-..+||.|...=|-| ++ .....++||.+..- .+ +.- .+.. +...-.
T Consensus 349 ~~~gyQD-----TLy~~-~~rq~y~~c~I~GtVDFI-FG--~a~avfq~c~i~~r~~~~~~~~~iTA--~~r~-~~~~~t 416 (538)
T PLN03043 349 SFEGYQD-----TLYVH-SLRQFYRECDIYGTVDFI-FG--NAAAIFQNCNLYARKPMANQKNAFTA--QGRT-DPNQNT 416 (538)
T ss_pred EEeccCc-----ccccC-CCcEEEEeeEEeeccceE-ee--cceeeeeccEEEEecCCCCCCceEEe--cCCC-CCCCCc
Confidence 7776433 22222 234567777777643322 22 34667777776421 12 221 1111 122334
Q ss_pred EEEEEeeEEecC
Q 045402 263 NVTVWKTVFTGT 274 (396)
Q Consensus 263 ni~i~n~~~~~~ 274 (396)
.+.|.||++...
T Consensus 417 G~~~~~c~i~~~ 428 (538)
T PLN03043 417 GISIINCTIEAA 428 (538)
T ss_pred eEEEEecEEecC
Confidence 677777777754
No 55
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.91 E-value=0.0018 Score=65.72 Aligned_cols=152 Identities=17% Similarity=0.200 Sum_probs=79.1
Q ss_pred CCCcccHHHHHHHHHHHhhcC-CCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEecee
Q 045402 41 NGVIDSTEAFAKAWAAACASN-ESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVS 119 (396)
Q Consensus 41 dg~tddt~aiq~Ai~~a~~~~-~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ 119 (396)
||. -|-..||+||+++.... .--+|+|.+|+|... +.++.. |. +++|.++|. +
T Consensus 213 dGs-G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~G~g~----------------------~ 266 (520)
T PLN02201 213 DGT-GNFTTIMDAVLAAPDYSTKRYVIYIKKGVYLEN-VEIKKK-KW-NIMMVGDGI----------------------D 266 (520)
T ss_pred CCC-CCccCHHHHHHhchhcCCCcEEEEEeCceeEEE-EEecCC-Cc-eEEEEecCC----------------------C
Confidence 443 35788999998763322 234799999999854 333321 24 899988871 0
Q ss_pred ceEEec--eeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEE
Q 045402 120 GVSIIG--GALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKII 192 (396)
Q Consensus 120 nv~I~G--G~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~ 192 (396)
...|++ -..+| |... ..+-.....+++..+|++|.|... .++.+. .++...+.+|++.
T Consensus 267 ~TiIt~~~~~~~g-----~~T~----------~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~ 331 (520)
T PLN02201 267 ATVITGNRSFIDG-----WTTF----------RSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMR 331 (520)
T ss_pred CcEEEeCCccCCC-----Cccc----------ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeee
Confidence 011111 00011 0000 112233446777788888877532 223332 4566677777777
Q ss_pred cCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeec
Q 045402 193 AAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCG 242 (396)
Q Consensus 193 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~ 242 (396)
... |-+..+. ..-..++|.|...=|-| ++ .....++||++.
T Consensus 332 G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~ 372 (520)
T PLN02201 332 GYQ-----DTLYTHT-MRQFYRECRITGTVDFI-FG--DATAVFQNCQIL 372 (520)
T ss_pred ccC-----CeeEeCC-CCEEEEeeEEeecccEE-ec--CceEEEEccEEE
Confidence 632 2233322 33455666666543322 22 245666777664
No 56
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.88 E-value=0.0011 Score=63.05 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 45 DSTEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 45 ddt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
-|-..||+||+++..... --+|+|.||+|... +.++.. |. +++|.+++
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~-V~i~~~-k~-~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPGTYREK-VTIPRS-KP-NVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SEEEE---EEE-ST-ST-TEEEEES-
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCeeEccc-cEeccc-cc-eEEEEecC
Confidence 456779999998632211 24799999999854 344321 14 88888876
No 57
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.87 E-value=0.0022 Score=65.48 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 46 STEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
|-..||+||+++..... --+|+|.+|+|... +.++.. |. +++|.++|
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~E~-V~i~~~-k~-~i~l~G~g 288 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREGVYEEN-VEIPIY-KT-NIVLIGDG 288 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCceeEEE-EecCCC-Cc-cEEEEecC
Confidence 57789999987633222 23689999999754 333211 24 89998887
No 58
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.86 E-value=0.0016 Score=66.94 Aligned_cols=182 Identities=17% Similarity=0.206 Sum_probs=93.3
Q ss_pred CCCcccHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC---E-EEeeccccccCCCcceEEE
Q 045402 41 NGVIDSTEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG---T-LVAPADYRVLGQADNWLSF 115 (396)
Q Consensus 41 dg~tddt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G---~-l~~~~~~~~~~~~~~~i~~ 115 (396)
||. -|-..||+||+++..... --+|+|.+|+|... +.++.. |. +++|.++| + |...
T Consensus 266 dGs-G~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~E~-V~i~~~-k~-~i~l~G~g~~~TiIt~~--------------- 326 (572)
T PLN02990 266 DGS-GQYKTINEALNAVPKANQKPFVIYIKQGVYNEK-VDVTKK-MT-HVTFIGDGPTKTKITGS--------------- 326 (572)
T ss_pred CCC-CCCcCHHHHHhhCcccCCceEEEEEeCceeEEE-EEecCC-CC-cEEEEecCCCceEEEec---------------
Confidence 443 356789999987632211 24799999999864 334321 24 89999987 2 2211
Q ss_pred eceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEE
Q 045402 116 EGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAK 190 (396)
Q Consensus 116 ~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~ 190 (396)
.+.. ++. |... +. +-.....+++..+|++|.|... .++.+. .++...+.+|+
T Consensus 327 ---~~~~------~g~----~~T~---------~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~ 383 (572)
T PLN02990 327 ---LNFY------IGK----VKTY---------LT-ATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQ 383 (572)
T ss_pred ---cccC------CCC----ccce---------ee-eEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeee
Confidence 1100 000 0000 01 1223346778888888887642 233333 46677777777
Q ss_pred EEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC---ce--EEEEeccccCCCCCEEEEE
Q 045402 191 IIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG---HG--ISIGSLGKDMDEEGVQNVT 265 (396)
Q Consensus 191 i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~---~g--i~igs~~~~~~~~~i~ni~ 265 (396)
|....| -+..+ +..-..++|.|...=|-| ++ .....++||++..- .| -.|-..+. .+...-..+.
T Consensus 384 ~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~v 453 (572)
T PLN02990 384 IDGYQD-----TLYVH-SHRQFFRDCTVSGTVDFI-FG--DAKVVLQNCNIVVRKPMKGQSCMITAQGR-SDVRESTGLV 453 (572)
T ss_pred Eecccc-----hhccC-CCcEEEEeeEEecccceE-cc--CceEEEEccEEEEecCCCCCceEEEeCCC-CCCCCCceEE
Confidence 776332 22222 234566777777643322 22 34567777776421 11 11211111 1122334677
Q ss_pred EEeeEEecC
Q 045402 266 VWKTVFTGT 274 (396)
Q Consensus 266 i~n~~~~~~ 274 (396)
|.||++...
T Consensus 454 f~~C~it~~ 462 (572)
T PLN02990 454 LQNCHITGE 462 (572)
T ss_pred EEeeEEecC
Confidence 777777764
No 59
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.84 E-value=0.0013 Score=59.41 Aligned_cols=123 Identities=24% Similarity=0.401 Sum_probs=80.7
Q ss_pred eEEeceEEecCC------cceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeE
Q 045402 161 VSIKGLLSLNSQ------MYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNL 234 (396)
Q Consensus 161 v~i~~v~i~~~~------~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni 234 (396)
+.|+++++.... ..++++..++++.|+|+++.+. +.+|+.+..+....+.+.... .++.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 347787776433 2468888899999999999874 457788775555454443322 123333334667
Q ss_pred EEEeeeecCC-ceEEEEeccccCCCCCEEEEEEEeeEEec-CCeEEEEEeecCCCCceEEeEEEEeEEEecCCccE
Q 045402 235 WIERVTCGPG-HGISIGSLGKDMDEEGVQNVTVWKTVFTG-TQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPI 308 (396)
Q Consensus 235 ~i~n~~~~~~-~gi~igs~~~~~~~~~i~ni~i~n~~~~~-~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i 308 (396)
.+.|+.+..+ .|+..++ ++++++||++.+ ...|+.+.... ++.++|++++++..++
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCccCc
Confidence 7788877654 3543322 699999999998 67889887542 2888888888776554
No 60
>PLN02671 pectinesterase
Probab=97.83 E-value=0.0051 Score=59.39 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=33.4
Q ss_pred CCCcccHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 41 NGVIDSTEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 41 dg~tddt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
||. -|-..||+||+++.+... --+|+|.+|+|... +.++.. |. +++|.++|
T Consensus 66 dGs-Gdf~TIQ~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~I~~~-k~-~Itl~G~g 117 (359)
T PLN02671 66 NGG-GDSLTVQGAVDMVPDYNSQRVKIYILPGIYREK-VLVPKS-KP-YISFIGNE 117 (359)
T ss_pred CCC-CCccCHHHHHHhchhcCCccEEEEEeCceEEEE-EEECCC-CC-eEEEEecC
Confidence 443 357889999997633222 24799999999865 333211 24 88888875
No 61
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.83 E-value=0.0022 Score=65.49 Aligned_cols=184 Identities=16% Similarity=0.185 Sum_probs=91.4
Q ss_pred CCCcccHHHHHHHHHHHhhc---CCCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEec
Q 045402 41 NGVIDSTEAFAKAWAAACAS---NESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEG 117 (396)
Q Consensus 41 dg~tddt~aiq~Ai~~a~~~---~~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~ 117 (396)
||. -|-..||+||+++... ..--+|+|.+|+|... +.++.. |. +++|.++|.
T Consensus 230 dGs-G~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~--------------------- 284 (539)
T PLN02995 230 DGS-GHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRLN-ND-DIMLVGDGM--------------------- 284 (539)
T ss_pred CCC-CCccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecCC-CC-cEEEEEcCC---------------------
Confidence 443 3577899999876321 1234799999999875 333211 24 899999871
Q ss_pred eeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEE
Q 045402 118 VSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKII 192 (396)
Q Consensus 118 ~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~ 192 (396)
+...|+|..--+.| |.. -..+-.....+++..+|++|.|... .++.+. .++...+.+|+|.
T Consensus 285 -~~TvIt~~~~~~~~---~~T----------~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~ 350 (539)
T PLN02995 285 -RSTIITGGRSVKGG---YTT----------YNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIE 350 (539)
T ss_pred -CCeEEEeCCccCCC---Ccc----------cceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEe
Confidence 00111110000000 000 0111223346777888888877532 233332 4566777777777
Q ss_pred cCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC------ceEEEEeccccCCCCCEEEEEE
Q 045402 193 AAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG------HGISIGSLGKDMDEEGVQNVTV 266 (396)
Q Consensus 193 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~~~~~~~~~i~ni~i 266 (396)
...|. +..+. ..-..++|.|...=|-| ++ .....++||++..- .| .|-..+. .+...-..+.|
T Consensus 351 G~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf 419 (539)
T PLN02995 351 GYQDT-----LMVHS-QRQFYRECYIYGTVDFI-FG--NAAAVFQNCIILPRRPLKGQAN-VITAQGR-ADPFQNTGISI 419 (539)
T ss_pred cccch-----hccCC-CceEEEeeEEeeccceE-ec--ccceEEeccEEEEecCCCCCcc-eEecCCC-CCCCCCceEEE
Confidence 64332 22222 33466677776543322 22 24566777766421 12 1111111 11122356677
Q ss_pred EeeEEecC
Q 045402 267 WKTVFTGT 274 (396)
Q Consensus 267 ~n~~~~~~ 274 (396)
.||++...
T Consensus 420 ~~c~i~~~ 427 (539)
T PLN02995 420 HNSRILPA 427 (539)
T ss_pred EeeEEecC
Confidence 77777763
No 62
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.81 E-value=0.0029 Score=65.31 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEEcCcEEEeccccccCcccCccEEEEEcC---EEE-eeccccccCCCcceEEEeceec
Q 045402 46 STEAFAKAWAAACASN-ESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDG---TLV-APADYRVLGQADNWLSFEGVSG 120 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~-~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G---~l~-~~~~~~~~~~~~~~i~~~~~~n 120 (396)
|-..||+||+++.... .--+|+|.+|+|... +.++.. |. +++|.++| ++. ... +
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~G~g~~~TiIt~~~------------------~ 354 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYDET-VTVDKK-MV-NVTMYGDGSQKTIVTGNK------------------N 354 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeEEE-EEEcCC-Cc-eEEEEecCCCceEEEECC------------------c
Confidence 5778999998763321 124799999999864 333321 24 89999887 221 110 0
Q ss_pred eEEec-eeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcC
Q 045402 121 VSIIG-GALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAA 194 (396)
Q Consensus 121 v~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~ 194 (396)
. ..| ++. +. +-.....+++..+|++|.|... .++.+. .++...+.+|+|...
T Consensus 355 ~-~~g~~T~--------------------~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~ 412 (596)
T PLN02745 355 F-ADGVRTF--------------------RT-ATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGY 412 (596)
T ss_pred c-cCCCcce--------------------ee-EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeec
Confidence 0 001 110 01 2223356778888888887532 223322 467777788887774
Q ss_pred CCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC------ceEEEEeccccCCCCCEEEEEEEe
Q 045402 195 GDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG------HGISIGSLGKDMDEEGVQNVTVWK 268 (396)
Q Consensus 195 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~~~~~~~~~i~ni~i~n 268 (396)
.| -+..+ ...-..++|.|...=|-| ++ .....++||.+... .| .|-..+. .+...-..+.|.|
T Consensus 413 QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~-~iTAq~r-~~~~~~~Gfvf~~ 481 (596)
T PLN02745 413 QD-----TLYAQ-THRQFYRSCVITGTIDFI-FG--DAAAIFQNCLIFVRKPLPNQQN-TVTAQGR-VDKFETTGIVLQN 481 (596)
T ss_pred cc-----ccccC-CCcEEEEeeEEEeeccEE-ec--ceeEEEEecEEEEecCCCCCCc-eEEecCC-CCCCCCceEEEEe
Confidence 33 22222 234567777777643322 22 35667777776421 12 1111111 1122345677777
Q ss_pred eEEecC
Q 045402 269 TVFTGT 274 (396)
Q Consensus 269 ~~~~~~ 274 (396)
|++...
T Consensus 482 c~i~~~ 487 (596)
T PLN02745 482 CRIAPD 487 (596)
T ss_pred eEEecC
Confidence 777754
No 63
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.79 E-value=0.0025 Score=65.77 Aligned_cols=179 Identities=16% Similarity=0.183 Sum_probs=90.8
Q ss_pred cHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceeceEEe
Q 045402 46 STEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSII 124 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
|-..||+||+++..... --+|||.+|+|... +.++.. |. |++|.++|. +...|+
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E~-V~i~~~-k~-ni~l~Gdg~----------------------~~TiIt 340 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAGVYREN-VEVTKK-KK-NIMFLGDGR----------------------GKTIIT 340 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCceeEEE-EEeCCC-CC-eEEEEecCC----------------------CccEEE
Confidence 57789999987633221 23899999999864 233211 24 899988871 111111
Q ss_pred c--eeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCCC
Q 045402 125 G--GALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--G~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~ 197 (396)
| -..+|.+ .+ ..+-.....+++..+|++|.|... .++.+. .++...+.+|.|....|
T Consensus 341 ~~~~~~~g~~-t~--------------~sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QD- 404 (587)
T PLN02313 341 GSRNVVDGST-TF--------------HSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQD- 404 (587)
T ss_pred eCCcccCCCC-ce--------------eeEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccc-
Confidence 1 0011110 00 012233445677888888887532 233222 45667777777776332
Q ss_pred CCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC---ce--EEEEeccccCCCCCEEEEEEEeeEEe
Q 045402 198 PNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG---HG--ISIGSLGKDMDEEGVQNVTVWKTVFT 272 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~---~g--i~igs~~~~~~~~~i~ni~i~n~~~~ 272 (396)
-+..+. ..-..++|.|...=|-| + |.....++||.+..- .| -.|-..|.. +...-..+.|.||++.
T Consensus 405 ----TLy~~~-~rq~y~~c~I~GtvDFI-F--G~a~avfq~c~i~~r~~~~~~~~~iTAqgr~-~~~~~tG~v~~~c~i~ 475 (587)
T PLN02313 405 ----TLYVHS-NRQFFVKCHITGTVDFI-F--GNAAAVLQDCDINARRPNSGQKNMVTAQGRS-DPNQNTGIVIQNCRIG 475 (587)
T ss_pred ----hhccCC-CcEEEEeeEEeecccee-c--cceeEEEEccEEEEecCCCCCcceEEecCCC-CCCCCceEEEEecEEe
Confidence 222222 33466777776643322 1 234667777766421 11 112111111 1223446777777776
Q ss_pred cC
Q 045402 273 GT 274 (396)
Q Consensus 273 ~~ 274 (396)
..
T Consensus 476 ~~ 477 (587)
T PLN02313 476 GT 477 (587)
T ss_pred cC
Confidence 54
No 64
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.79 E-value=0.0028 Score=64.78 Aligned_cols=177 Identities=16% Similarity=0.203 Sum_probs=92.0
Q ss_pred cHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceeceEEe
Q 045402 46 STEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSII 124 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
|-..||+||+++..... --+|+|.+|+|... +.++.. |. +++|.++|. +.-.|+
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~----------------------~~TiIt 301 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKGTYKEN-VEIGKK-KK-NLMLVGDGM----------------------DSTIIT 301 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCceeeEE-EEecCC-Cc-eEEEEecCC----------------------CCcEEE
Confidence 57789999987733221 23799999999864 333221 24 899988871 000111
Q ss_pred c--eeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCCC
Q 045402 125 G--GALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--G~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~ 197 (396)
| -..||.+ . -..+-.....+++..+|++|.|... .++.+. .++...+.+|+|....|
T Consensus 302 ~~~~~~dg~~-T--------------~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD- 365 (548)
T PLN02301 302 GSLNVIDGST-T--------------FRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD- 365 (548)
T ss_pred eCCccCCCCC-c--------------eeeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc-
Confidence 1 0001100 0 0112233446778888888887532 233222 45677777777776433
Q ss_pred CCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC------ce-EEEEeccccCCCCCEEEEEEEeeE
Q 045402 198 PNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG------HG-ISIGSLGKDMDEEGVQNVTVWKTV 270 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~------~g-i~igs~~~~~~~~~i~ni~i~n~~ 270 (396)
-+..+. ..-..+||.|...=|-| .|.....++||.+..- .+ +.- .+. .+...-..+.|.||+
T Consensus 366 ----TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~c~i~~~~~~~~~~~~iTA--qgr-~~~~~~tG~vf~~c~ 434 (548)
T PLN02301 366 ----TLYAHS-LRQFYRDSYITGTVDFI---FGNAAVVFQNCKIVARKPMAGQKNMVTA--QGR-TDPNQNTGISIQKCD 434 (548)
T ss_pred ----cceecC-CcEEEEeeEEEecccee---cccceeEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCCEEEEEeeE
Confidence 233222 33467777777643322 1234667777766421 12 211 111 112234467777777
Q ss_pred EecC
Q 045402 271 FTGT 274 (396)
Q Consensus 271 ~~~~ 274 (396)
+...
T Consensus 435 i~~~ 438 (548)
T PLN02301 435 IIAS 438 (548)
T ss_pred EecC
Confidence 7754
No 65
>PLN02304 probable pectinesterase
Probab=97.79 E-value=0.006 Score=59.21 Aligned_cols=51 Identities=25% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCCcccHHHHHHHHHHHhhcC-CCcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 41 NGVIDSTEAFAKAWAAACASN-ESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 41 dg~tddt~aiq~Ai~~a~~~~-~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
||. -|-..||+||+++.+.. .--+|+|.+|+|... +.++.. |+ +++|+++|
T Consensus 82 dGs-Gdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~Ek-V~Ip~~-K~-~Itl~G~g 133 (379)
T PLN02304 82 NGC-CNFTTVQSAVDAVGNFSQKRNVIWINSGIYYEK-VTVPKT-KP-NITFQGQG 133 (379)
T ss_pred CCC-CCccCHHHHHhhCcccCCCcEEEEEeCeEeEEE-EEECCC-CC-cEEEEecC
Confidence 443 34778999999763322 124699999999854 333211 24 89999886
No 66
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.78 E-value=0.0024 Score=66.45 Aligned_cols=203 Identities=12% Similarity=0.095 Sum_probs=113.9
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEEcCcEEEeccccccCcccCccEEEEEcC---E-EEeeccccccCCCcceEEEeceec
Q 045402 46 STEAFAKAWAAACASN-ESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDG---T-LVAPADYRVLGQADNWLSFEGVSG 120 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~-~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G---~-l~~~~~~~~~~~~~~~i~~~~~~n 120 (396)
|-..||+||+++.... .--+|+|.+|+|... +.++.. |. +++|.++| + |.+.. +
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~Gdg~~~TiIt~~~------------------~ 319 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAGIYKEY-VQVNRS-MT-HLVFIGDGPDKTVISGSK------------------S 319 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCCceEEE-EEEcCC-CC-cEEEEecCCCCeEEEcCC------------------c
Confidence 5778999998763321 123799999999874 333221 24 88888886 2 22110 0
Q ss_pred eEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCC
Q 045402 121 VSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAG 195 (396)
Q Consensus 121 v~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~ 195 (396)
. -+|.+ .+ +. +-.....+++..+|++|.|... ..+.+. ..+...+.+|+|....
T Consensus 320 ~------~dg~~-T~-------------~S-AT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q 378 (670)
T PLN02217 320 Y------KDGIT-TY-------------KT-ATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ 378 (670)
T ss_pred c------CCCCC-cc-------------ce-EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc
Confidence 0 01100 00 11 2233346788888888888642 334333 5788889999998744
Q ss_pred CCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC-----ceEEEEeccccCCCCCEEEEEEEeeE
Q 045402 196 DSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG-----HGISIGSLGKDMDEEGVQNVTVWKTV 270 (396)
Q Consensus 196 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~-----~gi~igs~~~~~~~~~i~ni~i~n~~ 270 (396)
| -+..+ ...-..++|.|...=|-| + |.....++||.+... ..-.|-..+. .+...-..+.|.||+
T Consensus 379 D-----TLy~~-~~Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~ 448 (670)
T PLN02217 379 D-----TLYAH-SHRQFYRDCTISGTIDFL-F--GDAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCT 448 (670)
T ss_pred c-----hhccC-CCcEEEEeCEEEEeccEE-e--cCceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeE
Confidence 3 33333 245678888888754432 2 235688888887531 1112212221 122334578899999
Q ss_pred EecCCeE--------EEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 271 FTGTQNG--------LRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 271 ~~~~~~g--------i~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
+.....- .+++ ++=.....+.|.+..|.+.
T Consensus 449 i~~~~~~~~~~~~~~~yLG----RPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 449 IVGEPDYLAVKETSKAYLG----RPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred EecCccccccccccceeec----cCCCCCceEEEEecccCCe
Confidence 9875321 2232 1223356777888877764
No 67
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.77 E-value=0.0057 Score=61.39 Aligned_cols=48 Identities=25% Similarity=0.283 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 45 DSTEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 45 ddt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
-+-..||+||+++..... --+|+|.+|+|... +.++.. |. +++|.++|
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-nItliGdg 255 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDEI-VRIGST-KP-NLTLIGDG 255 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCCeeEEE-EEecCC-Cc-cEEEEecC
Confidence 457789999987633221 24799999999864 333211 24 89999887
No 68
>PLN02432 putative pectinesterase
Probab=97.75 E-value=0.0046 Score=58.25 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 46 STEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
|-..||+||+++.+... --+|+|.+|+|... +.++.. |. +++|.+++
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~-V~ip~~-k~-~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPGIYREK-VVVPAD-KP-FITLSGTQ 69 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCceeEEE-EEEecc-Cc-eEEEEEcC
Confidence 57889999997633221 24789999999654 333211 24 88888875
No 69
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.69 E-value=0.00095 Score=59.73 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=73.5
Q ss_pred EeecceEEeceEEec---------------CCcceEEEeceecEEEEeEEEEcCCC---CCCCCc-eeee-cceeEEEEc
Q 045402 156 TNSNNVSIKGLLSLN---------------SQMYHIVINRCQDVLVEGAKIIAAGD---SPNTDG-IHIQ-QSRNVKIRS 215 (396)
Q Consensus 156 ~~~~nv~i~~v~i~~---------------~~~~~i~~~~~~nv~I~~~~i~~~~~---~~~~DG-i~~~-~s~nv~I~n 215 (396)
.+++||.|++++|.. ...+++.+..+++|.|++|++..... ....|| +++. .+.+|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 478899999999987 24467999999999999999997511 111454 5765 589999999
Q ss_pred cEEecCCceEEecCC-------CeeEEEEeeeecCCce--EEEEeccccCCCCCEEEEEEEeeEEec-CCeEEEEE
Q 045402 216 SSIKTGDDCISIGRG-------TNNLWIERVTCGPGHG--ISIGSLGKDMDEEGVQNVTVWKTVFTG-TQNGLRIK 281 (396)
Q Consensus 216 ~~i~~~dD~i~~~~~-------s~ni~i~n~~~~~~~g--i~igs~~~~~~~~~i~ni~i~n~~~~~-~~~gi~i~ 281 (396)
|.|.+.+.+..+++. ..++++-+|.+.+..+ -.+ ..-.+++-|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~----------r~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV----------RFGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE----------CSCEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc----------cccEEEEEEeeeECCCCEEEEcc
Confidence 999876444434331 2588888888754321 111 11257888887765 45666554
No 70
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.68 E-value=0.0049 Score=63.44 Aligned_cols=204 Identities=14% Similarity=0.157 Sum_probs=103.0
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceeceEEe
Q 045402 46 STEAFAKAWAAACASN-ESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSII 124 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~-~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-..||+||+++.... .--+|+|.+|+|... +.++.. |. |++|.++|. +...|+
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~E~-V~i~~~-k~-~i~~~G~g~----------------------~~tiIt 323 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKGVYFEN-VRVEKK-KW-NVVMVGDGM----------------------SKTIVS 323 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCceEEE-EEecCC-CC-eEEEEecCC----------------------CCCEEE
Confidence 4678999998763322 234899999999854 333221 24 899988871 000111
Q ss_pred ce--eEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCCC
Q 045402 125 GG--ALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 GG--~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~ 197 (396)
|. ..||.. . + +. +-.....+++..+|++|.|... .++.+. .++...+.+|+|....|
T Consensus 324 ~~~~~~dg~~-t-~------------~s-aT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD- 387 (565)
T PLN02468 324 GSLNFVDGTP-T-F------------ST-ATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQD- 387 (565)
T ss_pred eCCccCCCCC-c-c------------ce-eeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccc-
Confidence 10 001110 0 0 01 1223345778888888887532 223222 56777777777776433
Q ss_pred CCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC------ceEEEEeccccCCCCCEEEEEEEeeEE
Q 045402 198 PNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG------HGISIGSLGKDMDEEGVQNVTVWKTVF 271 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~~~~~~~~~i~ni~i~n~~~ 271 (396)
-+..+. ..-..++|.|...=|-| + |.....++||.+..- .+ .|-..+.. +......+.|.||++
T Consensus 388 ----TLy~~~-~rq~y~~C~I~GtvDFI-F--G~a~avfq~c~i~~~~~~~~~~~-~iTA~~r~-~~~~~~G~vf~~c~i 457 (565)
T PLN02468 388 ----TLYAHA-QRQFYRECNIYGTVDFI-F--GNSAVVFQNCNILPRRPMKGQQN-TITAQGRT-DPNQNTGISIQNCTI 457 (565)
T ss_pred ----hhccCC-CceEEEeeEEeccccee-e--ccceEEEeccEEEEecCCCCCCc-eEEecCCC-CCCCCceEEEEccEE
Confidence 222222 33457777777643322 2 234677777776421 12 12111111 123345677777777
Q ss_pred ecCCe----EEEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 272 TGTQN----GLRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 272 ~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
..... -.+++ .+=.....+.|.+..|.+.
T Consensus 458 ~~~~~~~~~~~yLG----RPW~~~sr~v~~~s~~~~~ 490 (565)
T PLN02468 458 LPLGDLTSVKTFLG----RPWKNYSTTVIMHSMMGSL 490 (565)
T ss_pred ecCCCccccceeee----cCCCCCceEEEEecccCCe
Confidence 75422 12222 1112234566666666553
No 71
>PLN02197 pectinesterase
Probab=97.62 E-value=0.0081 Score=61.89 Aligned_cols=211 Identities=13% Similarity=0.112 Sum_probs=104.2
Q ss_pred cHHHHHHHHHHHhhcCCC-cEEEEcCcEEEeccccccCcccCccEEEEEcC---EEEeeccccccCCCcceEEEeceece
Q 045402 46 STEAFAKAWAAACASNES-TIIYVPKGRYLLGSVAFKGECQSSDITFQIDG---TLVAPADYRVLGQADNWLSFEGVSGV 121 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~g-~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
|-..||+||+++...... -+|+|.+|+|... +.++.. |. +++|.++| ++.- .. .++
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-ni~l~G~g~~~TiIt---------------~~--~~~ 345 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAGIYNEQ-VTIPKK-KN-NIFMFGDGARKTVIS---------------YN--RSV 345 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCceEEEE-EEccCC-Cc-eEEEEEcCCCCeEEE---------------ec--ccc
Confidence 577899999876332222 3689999999864 333321 24 89999887 2211 10 000
Q ss_pred EEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCC
Q 045402 122 SIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGD 196 (396)
Q Consensus 122 ~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~ 196 (396)
.. .+|.+ . .+. +-.....+++..+|++|.|... .++.+. .++...+.+|+|....
T Consensus 346 ~~----~~g~~-T-------------~~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ- 405 (588)
T PLN02197 346 KL----SPGTT-T-------------SLS-GTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ- 405 (588)
T ss_pred cc----CCCCc-c-------------cce-eEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC-
Confidence 00 00100 0 001 2233456778888888887532 233333 4677777777777633
Q ss_pred CCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC---ce--EEEEeccccCCCCCEEEEEEEeeEE
Q 045402 197 SPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG---HG--ISIGSLGKDMDEEGVQNVTVWKTVF 271 (396)
Q Consensus 197 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~---~g--i~igs~~~~~~~~~i~ni~i~n~~~ 271 (396)
|-+..+. ..-..++|.|...=|-| ++ .....++||.+... .| -.|-..+.......-..+.|.||++
T Consensus 406 ----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~i 477 (588)
T PLN02197 406 ----DTLYVNN-GRQFYRNIVVSGTVDFI-FG--KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRI 477 (588)
T ss_pred ----cceEecC-CCEEEEeeEEEeccccc-cc--ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEE
Confidence 3233332 34567777777643322 22 23467777776421 11 1121111110012234677777777
Q ss_pred ecCCeE----EEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 272 TGTQNG----LRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 272 ~~~~~g----i~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
.....- ...+.+-|.+=.....+.|.+.+|.+.
T Consensus 478 t~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~~ 514 (588)
T PLN02197 478 VPDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGDL 514 (588)
T ss_pred ecCCcccccccccccccCCCCCCCceEEEEecccCCe
Confidence 764211 011111111122355666766666553
No 72
>PLN02314 pectinesterase
Probab=97.60 E-value=0.0041 Score=64.34 Aligned_cols=205 Identities=14% Similarity=0.178 Sum_probs=102.6
Q ss_pred cHHHHHHHHHHHhhcCC-CcEEEEcCcEEEeccccccCcccCccEEEEEcC---E-EEeeccccccCCCcceEEEeceec
Q 045402 46 STEAFAKAWAAACASNE-STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG---T-LVAPADYRVLGQADNWLSFEGVSG 120 (396)
Q Consensus 46 dt~aiq~Ai~~a~~~~~-g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G---~-l~~~~~~~~~~~~~~~i~~~~~~n 120 (396)
|-..||+||+++..... --+|+|.+|+|... +.++.. |. |++|.++| + |.... +
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~~~tiIt~~~------------------~ 347 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEGTYVEN-VLLDKS-KW-NVMIYGDGKDKTIISGSL------------------N 347 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCceEEEE-EEecCC-Cc-eEEEEecCCCCcEEEecC------------------C
Confidence 56779999987633221 23799999999864 333211 24 89999887 2 22110 0
Q ss_pred eEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCC
Q 045402 121 VSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAG 195 (396)
Q Consensus 121 v~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~ 195 (396)
. .||.. .+ +. +-.....+++..+|++|.|... .++.+. ..+...+.+|++....
T Consensus 348 ~------~~g~~-t~-------------~s-aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q 406 (586)
T PLN02314 348 F------VDGTP-TF-------------ST-ATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ 406 (586)
T ss_pred c------CCCCC-cc-------------ce-EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc
Confidence 0 01110 00 01 2223356778888888887532 223332 4566777777777643
Q ss_pred CCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCC------ceEEEEeccccCCCCCEEEEEEEee
Q 045402 196 DSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPG------HGISIGSLGKDMDEEGVQNVTVWKT 269 (396)
Q Consensus 196 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~~~~~~~~~i~ni~i~n~ 269 (396)
| -+..+. ..-..++|.|...=|-| + |.....++||.+..- .+ .|-..+.. +...-..+.|.||
T Consensus 407 D-----TLy~~~-~rq~y~~C~I~GtvDFI-F--G~a~avf~~c~i~~~~~~~~~~~-~iTA~~r~-~~~~~~G~vf~~c 475 (586)
T PLN02314 407 D-----TLYAHS-NRQFYRDCDITGTIDFI-F--GNAAVVFQNCNIQPRQPLPNQFN-TITAQGKK-DPNQNTGISIQRC 475 (586)
T ss_pred c-----hheeCC-CCEEEEeeEEEecccee-c--cCceeeeeccEEEEecCCCCCCc-eEecCCCC-CCCCCCEEEEEee
Confidence 2 232222 33566777777643322 2 234667777776421 12 12111111 1233456777777
Q ss_pred EEecCCeEEEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 270 VFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 270 ~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
++..... +....+-|.+=.....+.|.+..|.+.
T Consensus 476 ~i~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 476 TISAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred EEecCCc-ccccccccCCCCCCceEEEEecccCCc
Confidence 7776432 111111111112244566666666654
No 73
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.21 E-value=0.00049 Score=47.67 Aligned_cols=39 Identities=33% Similarity=0.346 Sum_probs=23.4
Q ss_pred ccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEEEecccc
Q 045402 38 AKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVA 79 (396)
Q Consensus 38 a~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~~i~ 79 (396)
|+|||+||||+||.+||++. +.|..|--..=||.+.++.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeCc
Confidence 68999999999999999753 4555554444489998754
No 74
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.21 E-value=0.059 Score=52.30 Aligned_cols=108 Identities=11% Similarity=0.109 Sum_probs=69.8
Q ss_pred EeecceEEeceEEecCC-cceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeE
Q 045402 156 TNSNNVSIKGLLSLNSQ-MYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNL 234 (396)
Q Consensus 156 ~~~~nv~i~~v~i~~~~-~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni 234 (396)
.+-.+|++.|+.|...+ ..++-+....++++.+|.+.+. . |.-++......|+.|.|....-||.-.+ ...+
T Consensus 118 ~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~--g~cl~~~~~~~VrGC~F~~C~~gi~~~~-~~~l 190 (386)
T PF01696_consen 118 VGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----H--GTCLESWAGGEVRGCTFYGCWKGIVSRG-KSKL 190 (386)
T ss_pred eeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----c--ceeEEEcCCcEEeeeEEEEEEEEeecCC-cceE
Confidence 33456778888887665 5677777778888888888863 2 3444444678888888887665664333 5677
Q ss_pred EEEeeeecCCc-eEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEE
Q 045402 235 WIERVTCGPGH-GISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIK 281 (396)
Q Consensus 235 ~i~n~~~~~~~-gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~ 281 (396)
.|++|.|+.+. |+.. .| +..+++|.+.++.-.+.++
T Consensus 191 sVk~C~FekC~igi~s--~G---------~~~i~hn~~~ec~Cf~l~~ 227 (386)
T PF01696_consen 191 SVKKCVFEKCVIGIVS--EG---------PARIRHNCASECGCFVLMK 227 (386)
T ss_pred EeeheeeeheEEEEEe--cC---------CeEEecceecccceEEEEc
Confidence 88888887664 6533 21 3446677776664444443
No 75
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.014 Score=54.95 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=46.0
Q ss_pred ceeEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecC
Q 045402 150 ATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGR 229 (396)
Q Consensus 150 ~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~ 229 (396)
...+.++++++..|.+-.+..- .++|..+.+++..+++-+++.. .-|.|...+.+..|+++..+...-|+++.-
T Consensus 150 GnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~~~~-----RygvHyM~t~~s~i~dn~s~~N~vG~ALMy 223 (408)
T COG3420 150 GNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRFRDL-----RYGVHYMYTNDSRISDNSSRDNRVGYALMY 223 (408)
T ss_pred cCceEEEcCCCcEEEcCccccc-cceEEEcccccceecccchhhe-----eeeEEEEeccCcEeecccccCCcceEEEEE
Confidence 3455666666665555444321 2455555555555555555532 234555555566666655555555555555
Q ss_pred CCeeEEEEeeeec
Q 045402 230 GTNNLWIERVTCG 242 (396)
Q Consensus 230 ~s~ni~i~n~~~~ 242 (396)
+++++|.|+.-.
T Consensus 224 -s~~l~V~~nrS~ 235 (408)
T COG3420 224 -SDRLKVSDNRSS 235 (408)
T ss_pred -eccEEEEcCccc
Confidence 556666665544
No 76
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.12 Score=48.53 Aligned_cols=48 Identities=21% Similarity=0.123 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHhhcCC--CcEEEEcCcEEEeccccccCcccCccEEEEEcC
Q 045402 45 DSTEAFAKAWAAACASNE--STIIYVPKGRYLLGSVAFKGECQSSDITFQIDG 95 (396)
Q Consensus 45 ddt~aiq~Ai~~a~~~~~--g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G 95 (396)
++-..||+|+++|..+.+ -..+.+.+|.|... +.++.. ...+||++++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e~-v~Vp~~--~~~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQET-VYVPAA--PGGITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceecee-EEecCC--CCceeEEecC
Confidence 677889999998733333 23566789999653 233321 1148888875
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=96.41 E-value=0.13 Score=46.07 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=67.6
Q ss_pred cEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEec-CCceEEecCCCeeEEEEeeeecCCce--EEEEeccccCCCC
Q 045402 183 DVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKT-GDDCISIGRGTNNLWIERVTCGPGHG--ISIGSLGKDMDEE 259 (396)
Q Consensus 183 nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~~~~~s~ni~i~n~~~~~~~g--i~igs~~~~~~~~ 259 (396)
..+++|+.|-. +..||||..+ +.+|+|+.+.. +.|++.++..+..++|.+.-..+... |.. .
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~---------N 126 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQH---------N 126 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE----------
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEe---------c
Confidence 34555555543 2457888775 77788877776 77888887744455555554433322 222 1
Q ss_pred CEEEEEEEeeEEecCCeEEEEEeecC-CC-CceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEe
Q 045402 260 GVQNVTVWKTVFTGTQNGLRIKSWAR-PS-NGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWN 337 (396)
Q Consensus 260 ~i~ni~i~n~~~~~~~~gi~i~~~~~-~~-~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~n 337 (396)
.--.++|+|-+..+. |-..++..+ .. .+.-|+|.+++........-+.|...|.+ ...|++++++.
T Consensus 127 g~Gtv~I~nF~a~d~--GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD----------~ati~~~~~~~ 194 (215)
T PF03211_consen 127 GGGTVTIKNFYAEDF--GKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD----------TATISNSCIKG 194 (215)
T ss_dssp SSEEEEEEEEEEEEE--EEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT----------TEEEEEEEEEE
T ss_pred CceeEEEEeEEEcCC--CEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC----------eEEEEEEEecC
Confidence 112566777555543 433443321 01 13456677776665544444556666654 34666666665
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.76 E-value=1.3 Score=39.75 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=88.4
Q ss_pred ecceEEeceEEecCCcceEEEeceecEEEEeEEEEcCCCCCCCCceeeecce-eEEEEccEEecCCceEEecCCCeeEEE
Q 045402 158 SNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSR-NVKIRSSSIKTGDDCISIGRGTNNLWI 236 (396)
Q Consensus 158 ~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~~~~~s~ni~i 236 (396)
-+..+|+|+.|-.+...+||... +.+|+|++...- ..|++.+.+.. .++|.+.-.++.+|-|-=..+.-.+.|
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I 133 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTI 133 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEE
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEE
Confidence 46789999999777778999998 889999999874 55889998766 899999999987776555555677888
Q ss_pred EeeeecCCceEEEEeccccCCC-CCEEEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEe
Q 045402 237 ERVTCGPGHGISIGSLGKDMDE-EGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFID 298 (396)
Q Consensus 237 ~n~~~~~~~gi~igs~~~~~~~-~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~n 298 (396)
+|-+.. ..|--+-|-|.-... +.-|++.+++........-+.|....+ +...++++.+..
T Consensus 134 ~nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g-D~ati~~~~~~~ 194 (215)
T PF03211_consen 134 KNFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG-DTATISNSCIKG 194 (215)
T ss_dssp EEEEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT-TTEEEEEEEEEE
T ss_pred EeEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC-CeEEEEEEEecC
Confidence 885443 234333344432222 245678777766544333346666666 667777777666
No 79
>PLN02480 Probable pectinesterase
Probab=95.35 E-value=1.1 Score=43.24 Aligned_cols=113 Identities=9% Similarity=0.058 Sum_probs=77.2
Q ss_pred EeceecEEEEeEEEEcCCC---C--CCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEe
Q 045402 178 INRCQDVLVEGAKIIAAGD---S--PNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGS 251 (396)
Q Consensus 178 ~~~~~nv~I~~~~i~~~~~---~--~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs 251 (396)
....++++++|++|.|... . ...-++.+. .+.++.++||.|....|-+.... ..-.++||++.+.-.+-+|.
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~ 205 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR 205 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc
Confidence 4456889999999999632 1 123455553 57899999999999888776544 46789999998776777765
Q ss_pred ccccCCCCCEEEEEEEeeEEecCC------eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 252 LGKDMDEEGVQNVTVWKTVFTGTQ------NGLRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 252 ~~~~~~~~~i~ni~i~n~~~~~~~------~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
. ...|+||++.... .|. |-.... ....-....|.|+++...
T Consensus 206 g----------~a~fe~C~i~s~~~~~~~~~G~-ITA~~r-~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 G----------RSIFHNCEIFVIADRRVKIYGS-ITAHNR-ESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred e----------eEEEEccEEEEecCCCCCCceE-EEcCCC-CCCCCCEEEEECCEEccc
Confidence 2 6679999998542 132 332222 112334578999999764
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=94.59 E-value=0.052 Score=35.59 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=20.6
Q ss_pred ceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeee
Q 045402 202 GIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTC 241 (396)
Q Consensus 202 Gi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~ 241 (396)
||.++.|.+.+|+++.+....+||.+.. +++.+++++++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEE
Confidence 4555555555555555555555555554 34444444444
No 81
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=93.62 E-value=1.4 Score=44.97 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=21.1
Q ss_pred ceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEe
Q 045402 208 SRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGS 251 (396)
Q Consensus 208 s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs 251 (396)
+....+.+|.|...-|-+..+. ..-.+++|++.+.-.+-+|.
T Consensus 297 ~D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG~ 338 (497)
T PLN02698 297 SDHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFGN 338 (497)
T ss_pred CCcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEecc
Confidence 3555566666665555554443 12355555555444444443
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.40 E-value=0.14 Score=33.53 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=31.6
Q ss_pred eEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEec
Q 045402 175 HIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKT 220 (396)
Q Consensus 175 ~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 220 (396)
+|.+..+.+.+|++.++.. +.+||.+..+++.+|+++.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 4667777777888888886 5568888888888888887764
No 83
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=93.01 E-value=5.5 Score=38.94 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=63.8
Q ss_pred EeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecC-CceEEecCCCeeEEEEeeeecCCc-eEEEEecccc
Q 045402 178 INRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTG-DDCISIGRGTNNLWIERVTCGPGH-GISIGSLGKD 255 (396)
Q Consensus 178 ~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~-dD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~~~~ 255 (396)
+..-.+|++.|+.+...+ ...|+-+.+..++++++|.|.+- .-|+..+. ...|+.|+|.+++ |+.-
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi~~------ 184 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGIVS------ 184 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEeec------
Confidence 445568899999999753 24577888889999999999984 44555544 6799999997664 5532
Q ss_pred CCCCCEEEEEEEeeEEecCCeEE
Q 045402 256 MDEEGVQNVTVWKTVFTGTQNGL 278 (396)
Q Consensus 256 ~~~~~i~ni~i~n~~~~~~~~gi 278 (396)
.+...+.|++|+|+...-|+
T Consensus 185 ---~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 ---RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred ---CCcceEEeeheeeeheEEEE
Confidence 34457888999999876666
No 84
>PLN02773 pectinesterase
Probab=89.94 E-value=13 Score=35.61 Aligned_cols=40 Identities=10% Similarity=0.134 Sum_probs=20.9
Q ss_pred EEEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEc
Q 045402 154 SITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIA 193 (396)
Q Consensus 154 ~~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~ 193 (396)
.....+++..+|++|.|... .++.+. ..+.+.+.+|++..
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G 141 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLG 141 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeec
Confidence 33456677777777776531 112111 34555555555554
No 85
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=88.70 E-value=12 Score=34.56 Aligned_cols=133 Identities=14% Similarity=0.208 Sum_probs=70.5
Q ss_pred EEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEec-CCceEEecCCCeeEEEEeeeecCCceEEEEeccc
Q 045402 176 IVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKT-GDDCISIGRGTNNLWIERVTCGPGHGISIGSLGK 254 (396)
Q Consensus 176 i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~ 254 (396)
+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.. .. +|+.+-...
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~----------------------~GI~v~g~~- 145 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGR----------------------EGIFVTGTS- 145 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCcc----------------------ccEEEEeee-
Confidence 444555677888888887521 12234444432 44444444443 12 243331110
Q ss_pred cCCCCCEEEEEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCC-CCcceEEEeE
Q 045402 255 DMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPG-QVSGVKISDI 333 (396)
Q Consensus 255 ~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~~i~ni 333 (396)
....+.++.|+.+.+.....|+.+..... + +.+ .++|..+++...++.+...- ...+.... .+..-.|++-
T Consensus 146 --~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~-~~n-~I~NN~I~~N~~Gi~~~~~~-pDlG~~s~~~~g~N~~~~N 217 (246)
T PF07602_consen 146 --ANPGINGNVISGNSIYFNKTGISISDNAA---P-VEN-KIENNIIENNNIGIVAIGDA-PDLGTGSEGSPGNNIFRNN 217 (246)
T ss_pred --cCCcccceEeecceEEecCcCeEEEcccC---C-ccc-eeeccEEEeCCcCeEeeccC-CccccCCCCCCCCcEEecC
Confidence 13467788899999998888998875433 2 222 44777777766677765432 22221111 1222356666
Q ss_pred EEEeEEEe
Q 045402 334 IYWNIRGT 341 (396)
Q Consensus 334 ~~~ni~~~ 341 (396)
..-||...
T Consensus 218 ~~~Dl~~~ 225 (246)
T PF07602_consen 218 GRYDLNNS 225 (246)
T ss_pred cceeeEec
Confidence 66666553
No 86
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=88.26 E-value=2.5 Score=39.36 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=51.3
Q ss_pred eeeecceeEEEEccEEecC--C---------ceEEecCCCeeEEEEeeeecCCceEEEEec---cccCCCCCEEEEEEEe
Q 045402 203 IHIQQSRNVKIRSSSIKTG--D---------DCISIGRGTNNLWIERVTCGPGHGISIGSL---GKDMDEEGVQNVTVWK 268 (396)
Q Consensus 203 i~~~~s~nv~I~n~~i~~~--d---------D~i~~~~~s~ni~i~n~~~~~~~gi~igs~---~~~~~~~~i~ni~i~n 268 (396)
+|++..++..|+|.+..+= | .-+++.. +.|..|.|..+.++.|+-||-- |.|. .-.+|....|
T Consensus 262 vhvengkhfvirnvkaknitpdfskkagidnatvaiyg-cdnfvidni~mvnsagmligygvikg~yl--sipqnfkln~ 338 (464)
T PRK10123 262 IHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYG-CDNFVIDNIEMINSAGMLIGYGVIKGKYL--SIPQNFKLNN 338 (464)
T ss_pred EEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEc-ccceEEeccccccccccEEEeeeeeccEe--cccccceece
Confidence 4555556666666655541 1 1233333 6778888888777777555431 2221 2235666666
Q ss_pred eEEecC-----CeEEEEEeecCCCCceEEeEEEEeEEEec
Q 045402 269 TVFTGT-----QNGLRIKSWARPSNGFVKGVRFIDAVMQN 303 (396)
Q Consensus 269 ~~~~~~-----~~gi~i~~~~~~~~g~v~nI~~~ni~~~~ 303 (396)
+.+.++ -+||.|.+ +...+-|-+.|+.|..
T Consensus 339 i~ldn~~l~yklrgiqiss-----gnatsfvaitn~~mkr 373 (464)
T PRK10123 339 IQLDNTHLAYKLRGIQISA-----GNAVSFVALTNIEMKR 373 (464)
T ss_pred EeecccccceeeeeeEecc-----CCcceEEEEeeeehhh
Confidence 666654 35777753 2334556666666654
No 87
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=87.48 E-value=15 Score=36.49 Aligned_cols=86 Identities=20% Similarity=0.287 Sum_probs=32.2
Q ss_pred eeEEEEccEEecCC---ceEEecCCCeeEEEEeeeecCCce-EEEEeccccCCCCCEEEEEEEeeEEecC-----CeEEE
Q 045402 209 RNVKIRSSSIKTGD---DCISIGRGTNNLWIERVTCGPGHG-ISIGSLGKDMDEEGVQNVTVWKTVFTGT-----QNGLR 279 (396)
Q Consensus 209 ~nv~I~n~~i~~~d---D~i~~~~~s~ni~i~n~~~~~~~g-i~igs~~~~~~~~~i~ni~i~n~~~~~~-----~~gi~ 279 (396)
++.+|+++.|...| .-|.+|+ ..-+|++++|..+.| +.+-. |. +-+|+++.|.+. ..|||
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISvKS--~~N~ir~Ntf~es~G~ltlRH-Gn--------~n~V~gN~FiGng~~~~tGGIR 267 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISVKS--SDNTIRNNTFRESQGSLTLRH-GN--------RNTVEGNVFIGNGVKEGTGGIR 267 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEEES--BT-EEES-EEES-SSEEEEEE--S--------S-EEES-EEEE-SSSS-B--EE
T ss_pred cceeeecchhhhcCCceeEEEeec--CCceEeccEEEeccceEEEec-CC--------CceEeccEEecCCCcCCCCceE
Confidence 55666666665532 2344454 334555555555544 44321 11 122444444432 12555
Q ss_pred EEeecCCCCceEEeEEEEeEEEecCCccEE
Q 045402 280 IKSWARPSNGFVKGVRFIDAVMQNVQNPII 309 (396)
Q Consensus 280 i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~ 309 (396)
|-. .+-.|.|=+|++++-.....++.
T Consensus 268 Ii~----~~H~I~nNY~~gl~g~~~~~~~~ 293 (425)
T PF14592_consen 268 IIG----EGHTIYNNYFEGLTGTRFRGALA 293 (425)
T ss_dssp E-S----BS-EEES-EEEESSB-TTTTSEE
T ss_pred Eec----CCcEEEcceeeccccceeeccee
Confidence 542 22345555666655555444554
No 88
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=86.83 E-value=19 Score=31.39 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=52.2
Q ss_pred ceeEEEEccEEec-CC-------ceEEecCCCeeEEEEeeeecCCceEEEEec---cccCCCCCEEEEEEEeeEEecCC-
Q 045402 208 SRNVKIRSSSIKT-GD-------DCISIGRGTNNLWIERVTCGPGHGISIGSL---GKDMDEEGVQNVTVWKTVFTGTQ- 275 (396)
Q Consensus 208 s~nv~I~n~~i~~-~d-------D~i~~~~~s~ni~i~n~~~~~~~gi~igs~---~~~~~~~~i~ni~i~n~~~~~~~- 275 (396)
.++|.|++..|+. |- .||. .++-+|.+|||+.|.+..+..|... ......+.---.+++|+.|.++.
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv-~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIV-TSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEE-eccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 4688888888876 21 2332 2336789999999987654332221 11111222334677777777753
Q ss_pred -------eEEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 276 -------NGLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 276 -------~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
.|..|... ...-..+.++|..+.+..
T Consensus 112 r~~~~~GtGYgv~N~----L~~tHsFvLenNclYnN~ 144 (198)
T PF08480_consen 112 RKSSPAGTGYGVINY----LPETHSFVLENNCLYNNA 144 (198)
T ss_pred cccCCCCceeEEEec----CCCcceEEEEccceeccC
Confidence 24444322 122355777777776654
No 89
>PLN02665 pectinesterase family protein
Probab=86.83 E-value=24 Score=34.57 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=64.7
Q ss_pred EEEEeecceEEeceEEecCCc---------ceEEEe-ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCC
Q 045402 153 LSITNSNNVSIKGLLSLNSQM---------YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGD 222 (396)
Q Consensus 153 i~~~~~~nv~i~~v~i~~~~~---------~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d 222 (396)
-....++++..+|++|+|... .++.+. ..+...+.||++....| -+... ...-..+||.|...=
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QD-----TL~~~-~gr~yf~~CyIeG~V 221 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQD-----TLCDD-KGRHFFKDCYIEGTV 221 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccc-----eeEeC-CCCEEEEeeEEeecc
Confidence 344567788888888887531 222222 35666677777665332 22221 234556666666543
Q ss_pred ceEEecCCCeeEEEEeeeecC-Cce--EEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEE-eecCCCCceEEeEEEEe
Q 045402 223 DCISIGRGTNNLWIERVTCGP-GHG--ISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIK-SWARPSNGFVKGVRFID 298 (396)
Q Consensus 223 D~i~~~~~s~ni~i~n~~~~~-~~g--i~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~-~~~~~~~g~v~nI~~~n 298 (396)
|-| ++ .....+++|++.. ..+ -.|-..+. .....-....|.||++.+....+++. .| +.-..+.|.+
T Consensus 222 DFI-FG--~g~a~fe~C~i~s~~~~~~g~ITA~~r-~~~~~~~GfvF~~C~itg~~~~~yLGRpW-----~~ysrvVf~~ 292 (366)
T PLN02665 222 DFI-FG--SGKSLYLNTELHVVGDGGLRVITAQAR-NSEAEDSGFSFVHCKVTGTGTGAYLGRAW-----MSRPRVVFAY 292 (366)
T ss_pred cee-cc--ccceeeEccEEEEecCCCcEEEEcCCC-CCCCCCceEEEEeeEEecCCCceeecCCC-----CCcceEEEEc
Confidence 322 12 2345666666642 111 01101111 01112235567777776643233443 22 1234566666
Q ss_pred EEEec
Q 045402 299 AVMQN 303 (396)
Q Consensus 299 i~~~~ 303 (396)
..|.+
T Consensus 293 t~m~~ 297 (366)
T PLN02665 293 TEMSS 297 (366)
T ss_pred cccCC
Confidence 66654
No 90
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=85.52 E-value=9.6 Score=37.48 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=33.1
Q ss_pred ceeEEEEccEEec-CCceEEecCC-----------------------CeeEEEEeeeecCCceEEEEeccccCCCCCEEE
Q 045402 208 SRNVKIRSSSIKT-GDDCISIGRG-----------------------TNNLWIERVTCGPGHGISIGSLGKDMDEEGVQN 263 (396)
Q Consensus 208 s~nv~I~n~~i~~-~dD~i~~~~~-----------------------s~ni~i~n~~~~~~~gi~igs~~~~~~~~~i~n 263 (396)
|-|..++|+.... -.||+.+++. -.|-.|+|....++.|+.++.-|+ .+.++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG~---~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDGK---GGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEECC---S-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecCC---CceEee
Confidence 3455666655433 5677777653 135667777666666666654432 334555
Q ss_pred EEEEeeEEecCCeEEEEEe
Q 045402 264 VTVWKTVFTGTQNGLRIKS 282 (396)
Q Consensus 264 i~i~n~~~~~~~~gi~i~~ 282 (396)
|++++| ...|+.+..
T Consensus 340 i~~~d~----~g~G~~~~~ 354 (549)
T PF09251_consen 340 ITVQDC----AGAGIFIRG 354 (549)
T ss_dssp EEEES-----SSESEEEEC
T ss_pred EEeecc----cCCceEEee
Confidence 555555 234555554
No 91
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=85.11 E-value=6.3 Score=34.30 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=8.7
Q ss_pred CEEEEEEEeeEEecCC
Q 045402 260 GVQNVTVWKTVFTGTQ 275 (396)
Q Consensus 260 ~i~ni~i~n~~~~~~~ 275 (396)
+..|-.|||+.|.+..
T Consensus 62 GF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 62 GFYNTLIENNVFDGVY 77 (198)
T ss_pred cccccEEEeeeecccc
Confidence 3445556666665543
No 92
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=82.16 E-value=50 Score=32.94 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=41.4
Q ss_pred ceecEEEEeEEEEcCCCC----CCCCceeee-cceeEEEEccEEecCCceEEecCC----------CeeEEEEeeeecCC
Q 045402 180 RCQDVLVEGAKIIAAGDS----PNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRG----------TNNLWIERVTCGPG 244 (396)
Q Consensus 180 ~~~nv~I~~~~i~~~~~~----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~----------s~ni~i~n~~~~~~ 244 (396)
..+++..+|++|.|.... .+...+.+. ....+.+.+|.|....|-+..... ...-.++||++.+.
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~ 283 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGD 283 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeec
Confidence 445555555555554210 111222222 245666666666665555554210 12456666666655
Q ss_pred ceEEEEeccccCCCCCEEEEEEEeeEEec
Q 045402 245 HGISIGSLGKDMDEEGVQNVTVWKTVFTG 273 (396)
Q Consensus 245 ~gi~igs~~~~~~~~~i~ni~i~n~~~~~ 273 (396)
-.+-+|.. ...|+||++..
T Consensus 284 VDFIFG~g----------~AvFenC~I~s 302 (422)
T PRK10531 284 VDFVFGRG----------AVVFDNTEFRV 302 (422)
T ss_pred ccEEccCc----------eEEEEcCEEEE
Confidence 55555442 44466666654
No 93
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=79.91 E-value=41 Score=35.69 Aligned_cols=115 Identities=7% Similarity=0.035 Sum_probs=79.3
Q ss_pred eceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCC
Q 045402 179 NRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMD 257 (396)
Q Consensus 179 ~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~ 257 (396)
...+++..+|++|+|.........+.+. .+....+.||.|....|-+..+. ..-.+++|++.+.-.+-+|..
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 406 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGDA----- 406 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecCc-----
Confidence 3567899999999997543333445554 46889999999999888877765 456899999987777777653
Q ss_pred CCCEEEEEEEeeEEecCC----eEEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 258 EEGVQNVTVWKTVFTGTQ----NGLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 258 ~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. ..-.|-.........-..+.|.|+++....
T Consensus 407 -----~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 407 -----AAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred -----eEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCc
Confidence 5679999998531 122343322112233456899999998753
No 94
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=79.53 E-value=58 Score=30.98 Aligned_cols=135 Identities=15% Similarity=0.183 Sum_probs=63.0
Q ss_pred EEeecceEEeceEEecCCc------ceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEec
Q 045402 155 ITNSNNVSIKGLLSLNSQM------YHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIG 228 (396)
Q Consensus 155 ~~~~~nv~i~~v~i~~~~~------~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~ 228 (396)
....+++.+++++|.|... -++.+ ..+.+.+.+|++.+. .|-+.... ....++||.|...-|-| ++
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~-----QDTL~~~~-~r~y~~~c~IeG~vDFI-fG 154 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGY-----QDTLYANG-GRQYFKNCYIEGNVDFI-FG 154 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-S-----TT-EEE-S-SEEEEES-EEEESEEEE-EE
T ss_pred cccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccc-----cceeeecc-ceeEEEeeEEEecCcEE-EC
Confidence 3457888888888887532 12332 456777777777763 33343332 45667777777654433 22
Q ss_pred CCCeeEEEEeeeecC-----CceEEEEeccccCCCCCEEEEEEEeeEEecCC--------eEEEEEeecCCCCceEEeEE
Q 045402 229 RGTNNLWIERVTCGP-----GHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQ--------NGLRIKSWARPSNGFVKGVR 295 (396)
Q Consensus 229 ~~s~ni~i~n~~~~~-----~~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~--------~gi~i~~~~~~~~g~v~nI~ 295 (396)
. ....++||++.. +..-.|-..+. .+...-..+.|.||++.... ...++.- +=+.-..+.
T Consensus 155 ~--~~a~f~~c~i~~~~~~~~~~~~ItA~~r-~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGR----pW~~~s~vv 227 (298)
T PF01095_consen 155 N--GTAVFENCTIHSRRPGGGQGGYITAQGR-TSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGR----PWGPYSRVV 227 (298)
T ss_dssp S--SEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE------SSEETEEE
T ss_pred C--eeEEeeeeEEEEeccccccceeEEeCCc-cccCCCeEEEEEEeEEecCccccccccceeEEecC----cccceeeEE
Confidence 2 355677777652 11111211111 11223456677777777532 1233331 112344677
Q ss_pred EEeEEEecC
Q 045402 296 FIDAVMQNV 304 (396)
Q Consensus 296 ~~ni~~~~~ 304 (396)
|.|..|.+.
T Consensus 228 f~~t~m~~~ 236 (298)
T PF01095_consen 228 FINTYMDDH 236 (298)
T ss_dssp EES-EE-TT
T ss_pred EEccccCCe
Confidence 777777764
No 95
>PLN02197 pectinesterase
Probab=79.38 E-value=41 Score=35.21 Aligned_cols=116 Identities=5% Similarity=0.079 Sum_probs=78.7
Q ss_pred EeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccC
Q 045402 178 INRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDM 256 (396)
Q Consensus 178 ~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~ 256 (396)
....+++..+|++|.|.........+.+. .+....+.+|.|....|-+..++ ..-.++||++++.-.+-+|..
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 433 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGKS---- 433 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccce----
Confidence 34678899999999996532233445554 46889999999999888888776 345899999987777777653
Q ss_pred CCCCEEEEEEEeeEEecCC--eE--EEEEeecCCC-CceEEeEEEEeEEEecCC
Q 045402 257 DEEGVQNVTVWKTVFTGTQ--NG--LRIKSWARPS-NGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 257 ~~~~i~ni~i~n~~~~~~~--~g--i~i~~~~~~~-~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. .| -.|....... ...-..+.|.|+++....
T Consensus 434 ------~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 434 ------ATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred ------eeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCC
Confidence 4679999887421 11 1333221111 133456899999998743
No 96
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=78.70 E-value=46 Score=34.74 Aligned_cols=116 Identities=5% Similarity=0.013 Sum_probs=80.0
Q ss_pred EeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccC
Q 045402 178 INRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDM 256 (396)
Q Consensus 178 ~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~ 256 (396)
....+++..+|++|.|.........+.+. .+....+.||.|....|-+..++ ..-.++||++.+.-.+-+|..
T Consensus 341 ~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a---- 414 (565)
T PLN02468 341 AVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGNS---- 414 (565)
T ss_pred eEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeeccc----
Confidence 34568999999999986543233444443 46889999999999888887776 345799999988778878763
Q ss_pred CCCCEEEEEEEeeEEecCCe----EEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 257 DEEGVQNVTVWKTVFTGTQN----GLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 257 ~~~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... .-.|..........-..+.|.|+++....
T Consensus 415 ------~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 415 ------AVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred ------eEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCC
Confidence 67799999974311 12333322112234456899999998653
No 97
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=78.04 E-value=77 Score=33.01 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=37.4
Q ss_pred EeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCC
Q 045402 156 TNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRG 230 (396)
Q Consensus 156 ~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~ 230 (396)
...+++..+|++|.|... .++.+. .++.+.+.||+|....| -+..+. ..-..++|.|...=|-| ++
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~~-~rq~y~~C~I~GtVDFI-FG-- 397 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD-----TLYAHS-LRQFYKSCRIQGNVDFI-FG-- 397 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceeCC-CceEEEeeEEeecCCEE-ec--
Confidence 345677777777776532 222222 35556666666665322 222222 23345566665543322 11
Q ss_pred CeeEEEEeeeec
Q 045402 231 TNNLWIERVTCG 242 (396)
Q Consensus 231 s~ni~i~n~~~~ 242 (396)
.....++||.+.
T Consensus 398 ~a~avfq~c~i~ 409 (553)
T PLN02708 398 NSAAVFQDCAIL 409 (553)
T ss_pred CceEEEEccEEE
Confidence 235556666553
No 98
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=77.91 E-value=69 Score=32.87 Aligned_cols=141 Identities=9% Similarity=0.009 Sum_probs=84.4
Q ss_pred EEeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecC
Q 045402 155 ITNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGR 229 (396)
Q Consensus 155 ~~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~ 229 (396)
....+++..+|++|.|... .++.+. ..+...+.+|.|.... |-+.... ..-..++|.|...=|-| ++
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFI-FG- 337 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFI-FG- 337 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceE-ec-
Confidence 3457899999999998643 233333 5789999999999844 3333333 34588899999754433 23
Q ss_pred CCeeEEEEeeeecCC---ce--EEEEeccccCCCCCEEEEEEEeeEEecCCeEEEE----EeecCCCCceEEeEEEEeEE
Q 045402 230 GTNNLWIERVTCGPG---HG--ISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRI----KSWARPSNGFVKGVRFIDAV 300 (396)
Q Consensus 230 ~s~ni~i~n~~~~~~---~g--i~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i----~~~~~~~~g~v~nI~~~ni~ 300 (396)
.....++||++... .+ -.|-..+.. +...-..+.|.||++......... +..-|.+=.....+.|.+..
T Consensus 338 -~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s~ 415 (497)
T PLN02698 338 -NAAAVFQNCYLFLRRPHGKSYNVILANGRS-DPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMESY 415 (497)
T ss_pred -ccceeecccEEEEecCCCCCceEEEecCCC-CCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEecc
Confidence 35679999988531 11 112111211 123346899999999975321111 11111122335678888888
Q ss_pred EecCC
Q 045402 301 MQNVQ 305 (396)
Q Consensus 301 ~~~~~ 305 (396)
|.+.-
T Consensus 416 l~~~I 420 (497)
T PLN02698 416 IDDAI 420 (497)
T ss_pred cCCcc
Confidence 87643
No 99
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=76.46 E-value=70 Score=33.61 Aligned_cols=116 Identities=6% Similarity=0.041 Sum_probs=79.3
Q ss_pred EeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccC
Q 045402 178 INRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDM 256 (396)
Q Consensus 178 ~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~ 256 (396)
....+++..+|++|.|.........+.+. .+....+.||.|....|-+..+. ..-.++||++.+.-.+-+|..
T Consensus 368 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 441 (596)
T PLN02745 368 VALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGDA---- 441 (596)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecce----
Confidence 34678899999999986432233344443 46899999999999888877665 457999999988777777653
Q ss_pred CCCCEEEEEEEeeEEecCCe----EEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 257 DEEGVQNVTVWKTVFTGTQN----GLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 257 ~~~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... .-.|..........-..+.|.|++++...
T Consensus 442 ------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 442 ------AAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ------eEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCc
Confidence 67799999875311 11333222112233456899999998643
No 100
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=74.26 E-value=1.1e+02 Score=31.54 Aligned_cols=117 Identities=7% Similarity=0.090 Sum_probs=79.9
Q ss_pred EEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEecccc
Q 045402 177 VINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKD 255 (396)
Q Consensus 177 ~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~ 255 (396)
.....+++..+|++|.|.........+.+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|..
T Consensus 308 v~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 382 (529)
T PLN02170 308 VAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGNS--- 382 (529)
T ss_pred EEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceecccc---
Confidence 345678899999999997532233344443 46889999999999888887766 345789999988777777653
Q ss_pred CCCCCEEEEEEEeeEEecCCe---EEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 256 MDEEGVQNVTVWKTVFTGTQN---GLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 256 ~~~~~i~ni~i~n~~~~~~~~---gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++..... .-.|-.........-..+.|.|++++...
T Consensus 383 -------~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 383 -------AVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred -------eEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 56799999885321 12343221112233356899999998753
No 101
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=74.13 E-value=82 Score=32.68 Aligned_cols=116 Identities=8% Similarity=0.041 Sum_probs=79.3
Q ss_pred EeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccC
Q 045402 178 INRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDM 256 (396)
Q Consensus 178 ~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~ 256 (396)
....+++..+|++|.|.........+.+. .+....+.+|.|....|-+..+. ..-.++||++.+.-.+-+|..
T Consensus 308 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 381 (539)
T PLN02995 308 GIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGNA---- 381 (539)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEeccc----
Confidence 34578899999999986532233445554 46889999999999888777765 345999999988777777653
Q ss_pred CCCCEEEEEEEeeEEecCCe----EEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 257 DEEGVQNVTVWKTVFTGTQN----GLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 257 ~~~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++..... .-.|-.........-..+.|.|+++....
T Consensus 382 ------~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 382 ------AAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAP 428 (539)
T ss_pred ------ceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCC
Confidence 56688888875321 12333222112233457899999998743
No 102
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=73.26 E-value=93 Score=32.14 Aligned_cols=116 Identities=7% Similarity=0.109 Sum_probs=77.3
Q ss_pred EEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEecccc
Q 045402 177 VINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKD 255 (396)
Q Consensus 177 ~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~ 255 (396)
.....+++..+|++|.|.........+.+. .+....+.+|.|....|-+..+. ..-.+++|++.+.-.+-+|..
T Consensus 300 ~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~IeGtVDFIFG~a--- 374 (530)
T PLN02933 300 VGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS--AKQFYRECDIYGTIDFIFGNA--- 374 (530)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC--CceEEEeeEEecccceeccCc---
Confidence 344668899999999996543233445554 46889999999999888887766 345999999988777777653
Q ss_pred CCCCCEEEEEEEeeEEecCC----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 256 MDEEGVQNVTVWKTVFTGTQ----NGLRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 256 ~~~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
...|+||++.-.. ..-.|-.........-..+.|.|+++...
T Consensus 375 -------~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 375 -------AVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred -------eEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 5668888886431 11123222111222334588999998764
No 103
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=72.17 E-value=82 Score=32.65 Aligned_cols=116 Identities=9% Similarity=0.057 Sum_probs=79.6
Q ss_pred EEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEecccc
Q 045402 177 VINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKD 255 (396)
Q Consensus 177 ~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~ 255 (396)
.....+++..+|++|.|.........+.+. .+..+.+.+|.|....|-+..+. ..-.++||++.+.-.+-+|..
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~a--- 388 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGNG--- 388 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccCc---
Confidence 345678999999999997543233444443 46899999999999888887766 346999999988777877763
Q ss_pred CCCCCEEEEEEEeeEEecCCe----EEEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 256 MDEEGVQNVTVWKTVFTGTQN----GLRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 256 ~~~~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
...|+||++..... .-.|....+.....-..+.|.|+++...
T Consensus 389 -------~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 389 -------AAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred -------eeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 57799999985321 1233322211222335688999999864
No 104
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=69.50 E-value=1.2e+02 Score=30.08 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=31.2
Q ss_pred eeEEEEeeeecCC--ceEEEEeccc---------------cCCCCCEEEEEEEeeEEecCCeEEEEEeecCCCCceEEeE
Q 045402 232 NNLWIERVTCGPG--HGISIGSLGK---------------DMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGV 294 (396)
Q Consensus 232 ~ni~i~n~~~~~~--~gi~igs~~~---------------~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI 294 (396)
.|..++|...-.+ +|+-+++-.. |.-.+-..|=.|+|+...++ .|+.+.. ...+++|+||
T Consensus 264 YnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~~--DG~~~yvsni 340 (549)
T PF09251_consen 264 YNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIGM--DGKGGYVSNI 340 (549)
T ss_dssp BS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEE--ECCS-EEEEE
T ss_pred eeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeeee--cCCCceEeeE
Confidence 5788888765443 3677765311 11112235666777777765 3443322 2256788888
Q ss_pred EEEeEEEe
Q 045402 295 RFIDAVMQ 302 (396)
Q Consensus 295 ~~~ni~~~ 302 (396)
+.+++.-.
T Consensus 341 ~~~d~~g~ 348 (549)
T PF09251_consen 341 TVQDCAGA 348 (549)
T ss_dssp EEES-SSE
T ss_pred EeecccCC
Confidence 77765443
No 105
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=69.38 E-value=1.4e+02 Score=30.76 Aligned_cols=116 Identities=5% Similarity=0.018 Sum_probs=78.1
Q ss_pred EEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEecccc
Q 045402 177 VINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKD 255 (396)
Q Consensus 177 ~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~ 255 (396)
.....+++..+|++|.|.........+.+. .+....+.+|.|....|-+..+. ..-.++||++.+.-.+-+|..
T Consensus 288 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 362 (520)
T PLN02201 288 FAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGDA--- 362 (520)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecCc---
Confidence 344678899999999997542233444544 46889999999999888888776 345789999988777777653
Q ss_pred CCCCCEEEEEEEeeEEecCC----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 256 MDEEGVQNVTVWKTVFTGTQ----NGLRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 256 ~~~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
...|+||++.... ..-.|..........-..+.|.|+++...
T Consensus 363 -------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 363 -------TAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred -------eEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 5678888887521 11123322211223344588999988763
No 106
>PLN02916 pectinesterase family protein
Probab=69.33 E-value=1.4e+02 Score=30.63 Aligned_cols=117 Identities=9% Similarity=0.010 Sum_probs=79.3
Q ss_pred EEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEecccc
Q 045402 177 VINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKD 255 (396)
Q Consensus 177 ~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~ 255 (396)
.....+++..+|++|.|.........+.+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|..
T Consensus 272 ~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 346 (502)
T PLN02916 272 FGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGDA--- 346 (502)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccCc---
Confidence 344567899999999986543333444544 46889999999999888888776 346889999988777777653
Q ss_pred CCCCCEEEEEEEeeEEecCC----eEEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 256 MDEEGVQNVTVWKTVFTGTQ----NGLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 256 ~~~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. ..-.|-.........-..+.|.|+++....
T Consensus 347 -------~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 347 -------AVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred -------eEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 6678888887532 112333221112233456889999997643
No 107
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=69.26 E-value=1.1e+02 Score=31.83 Aligned_cols=116 Identities=6% Similarity=0.039 Sum_probs=79.2
Q ss_pred EeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccC
Q 045402 178 INRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDM 256 (396)
Q Consensus 178 ~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~ 256 (396)
....+++..+|++|.|.........+.+. .+....+.+|.|....|-+..++ ..-.++||++.+.-.+-+|..
T Consensus 319 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 392 (548)
T PLN02301 319 AAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGNA---- 392 (548)
T ss_pred EEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceecccc----
Confidence 44568899999999986532233444443 46889999999999888888776 345999999988777777663
Q ss_pred CCCCEEEEEEEeeEEecCCe----EEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 257 DEEGVQNVTVWKTVFTGTQN----GLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 257 ~~~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... .-.|..........-..+.|.|+++....
T Consensus 393 ------~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 393 ------AVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASS 439 (548)
T ss_pred ------eeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCc
Confidence 66789999875321 11233222112233456889999998643
No 108
>PLN02314 pectinesterase
Probab=69.08 E-value=1.1e+02 Score=32.19 Aligned_cols=117 Identities=9% Similarity=0.063 Sum_probs=80.1
Q ss_pred EEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEecccc
Q 045402 177 VINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKD 255 (396)
Q Consensus 177 ~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~ 255 (396)
.....+++..+|++|.|.........+.+. .+....+.||.|....|-+..++ ..-.++||++.+.-.+-+|..
T Consensus 360 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a--- 434 (586)
T PLN02314 360 FAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGNA--- 434 (586)
T ss_pred EEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccCc---
Confidence 344678899999999996532233444544 46889999999999888887776 345899999988777777653
Q ss_pred CCCCCEEEEEEEeeEEecCC----eEEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 256 MDEEGVQNVTVWKTVFTGTQ----NGLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 256 ~~~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 435 -------~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 435 -------AVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred -------eeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 6679999997431 111333222112234456899999998754
No 109
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=68.23 E-value=1.2e+02 Score=31.64 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=38.5
Q ss_pred EeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCC
Q 045402 156 TNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRG 230 (396)
Q Consensus 156 ~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~ 230 (396)
...+++..+|++|.|... .++.+. .++.+.+.+|+|....| -+..+ +..-..++|.|...=|-| + |
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-F--G 384 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQD-----TLYVH-SFRQFYRECDIYGTIDYI-F--G 384 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccc-----hhccC-CCceEEEeeEEeecccee-e--c
Confidence 346677777777776532 122222 34566666666665332 12222 233456666666543322 1 1
Q ss_pred CeeEEEEeeeec
Q 045402 231 TNNLWIERVTCG 242 (396)
Q Consensus 231 s~ni~i~n~~~~ 242 (396)
.....++||++.
T Consensus 385 ~a~avfq~c~i~ 396 (541)
T PLN02416 385 NAAVVFQACNIV 396 (541)
T ss_pred cceEEEeccEEE
Confidence 235566666653
No 110
>PLN02682 pectinesterase family protein
Probab=67.63 E-value=1.3e+02 Score=29.57 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=63.6
Q ss_pred EEEEeecceEEeceEEecCCc---------ceEEEe-ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCC
Q 045402 153 LSITNSNNVSIKGLLSLNSQM---------YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGD 222 (396)
Q Consensus 153 i~~~~~~nv~i~~v~i~~~~~---------~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d 222 (396)
-.....+++..+|++|.|... .++.+. ..+...+.+|++....| -+-.. ...-..+||.|...=
T Consensus 157 T~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QD-----TLy~~-~gRqyf~~C~IeG~V 230 (369)
T PLN02682 157 TFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQD-----TLYDH-LGRHYFKDCYIEGSV 230 (369)
T ss_pred EEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecccc-----ceEEC-CCCEEEEeeEEcccc
Confidence 334456778888888887531 122222 45666666666666332 22221 234556666666543
Q ss_pred ceEEecCCCeeEEEEeeeecC---Cce-EEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEE-eecCCCCceEEeEEEE
Q 045402 223 DCISIGRGTNNLWIERVTCGP---GHG-ISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIK-SWARPSNGFVKGVRFI 297 (396)
Q Consensus 223 D~i~~~~~s~ni~i~n~~~~~---~~g-i~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~-~~~~~~~g~v~nI~~~ 297 (396)
|-| ++ .....+++|++.. ..| +.- .+.. ....-....|.||++.+.. -+++. .| +....+.|.
T Consensus 231 DFI-FG--~g~a~Fe~C~I~s~~~~~G~ITA--~~r~-~~~~~~GfvF~~C~itg~g-~~yLGRpW-----~~yarvVf~ 298 (369)
T PLN02682 231 DFI-FG--NGLSLYEGCHLHAIARNFGALTA--QKRQ-SVLEDTGFSFVNCKVTGSG-ALYLGRAW-----GTFSRVVFA 298 (369)
T ss_pred cEE-ec--CceEEEEccEEEEecCCCeEEec--CCCC-CCCCCceEEEEeeEecCCC-ceEeecCC-----CCcceEEEE
Confidence 322 12 2356666666642 122 111 1100 1112235666677766532 23332 22 124456666
Q ss_pred eEEEecC
Q 045402 298 DAVMQNV 304 (396)
Q Consensus 298 ni~~~~~ 304 (396)
|..|.+.
T Consensus 299 ~t~m~~~ 305 (369)
T PLN02682 299 YTYMDNI 305 (369)
T ss_pred eccCCCc
Confidence 6666553
No 111
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=67.62 E-value=1.2e+02 Score=31.66 Aligned_cols=115 Identities=8% Similarity=0.024 Sum_probs=79.4
Q ss_pred EeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccC
Q 045402 178 INRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDM 256 (396)
Q Consensus 178 ~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~ 256 (396)
....+++..+|++|.|........++.+. .+....+.+|.|....|-+..++ ..-.++||++++.-.+-+|..
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 409 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGNA---- 409 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceecccc----
Confidence 34568999999999996543333445544 46889999999999888888776 346999999988777777663
Q ss_pred CCCCEEEEEEEeeEEecCC----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 257 DEEGVQNVTVWKTVFTGTQ----NGLRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 257 ~~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
.+.|+||++.... ..-.|..........-..+.|.|+++...
T Consensus 410 ------~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 410 ------AVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred ------eEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 6779999997531 11123322111223345688999999764
No 112
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=63.91 E-value=1.9e+02 Score=30.36 Aligned_cols=117 Identities=7% Similarity=0.065 Sum_probs=79.7
Q ss_pred EEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEecccc
Q 045402 177 VINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKD 255 (396)
Q Consensus 177 ~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~ 255 (396)
.....+++..+|++|.|.........+.+. .+....+.||.|....|-+..++ ..-.++||++.+.-.+-+|..
T Consensus 355 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 429 (587)
T PLN02484 355 FAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGNA--- 429 (587)
T ss_pred EEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceecccc---
Confidence 344678899999999986542233444444 46889999999999888887766 346899999988777777663
Q ss_pred CCCCCEEEEEEEeeEEecCC----eEEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 256 MDEEGVQNVTVWKTVFTGTQ----NGLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 256 ~~~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. ..-.|-.........-..+.|.|+++....
T Consensus 430 -------~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 430 -------AVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAAS 476 (587)
T ss_pred -------eeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCC
Confidence 6679999997531 112333222112233456899999997643
No 113
>PLN02176 putative pectinesterase
Probab=63.69 E-value=1.5e+02 Score=28.83 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=38.8
Q ss_pred eecceEEeceEEecCCc----------ceEEEe-ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceE
Q 045402 157 NSNNVSIKGLLSLNSQM----------YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCI 225 (396)
Q Consensus 157 ~~~nv~i~~v~i~~~~~----------~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i 225 (396)
..+++..+|++|.|... .++.+. ..+...+.+|++....| -+-.. ...-..++|.|...=|-|
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QD-----TLy~~-~gRqyf~~CyIeG~VDFI 193 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQD-----TLFDG-KGRHYYKRCVISGGIDFI 193 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccc-----eeEeC-CcCEEEEecEEEecccEE
Confidence 46777777777776521 122221 34566666666665322 22221 234556666666543322
Q ss_pred EecCCCeeEEEEeeeec
Q 045402 226 SIGRGTNNLWIERVTCG 242 (396)
Q Consensus 226 ~~~~~s~ni~i~n~~~~ 242 (396)
++ .....++||++.
T Consensus 194 -FG--~a~a~Fe~C~I~ 207 (340)
T PLN02176 194 -FG--YAQSIFEGCTLK 207 (340)
T ss_pred -ec--CceEEEeccEEE
Confidence 12 234566666654
No 114
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=63.58 E-value=3.8 Score=21.20 Aligned_cols=13 Identities=31% Similarity=0.582 Sum_probs=7.6
Q ss_pred ChhhHHHHHHHHH
Q 045402 1 MAKFLISLIFSIF 13 (396)
Q Consensus 1 m~~~l~~~~~~~~ 13 (396)
|.|++++|+.+++
T Consensus 1 MMk~vIIlvvLLl 13 (19)
T PF13956_consen 1 MMKLVIILVVLLL 13 (19)
T ss_pred CceehHHHHHHHh
Confidence 7777655554444
No 115
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=63.14 E-value=2e+02 Score=30.14 Aligned_cols=115 Identities=7% Similarity=0.067 Sum_probs=79.1
Q ss_pred eceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCC
Q 045402 179 NRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMD 257 (396)
Q Consensus 179 ~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~ 257 (396)
...+++..+|++|.|.........+.+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|..
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 416 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGDA----- 416 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccCc-----
Confidence 3567899999999986532233445554 46889999999999888887766 346889999988777777653
Q ss_pred CCCEEEEEEEeeEEecCCe----EEEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 258 EEGVQNVTVWKTVFTGTQN----GLRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 258 ~~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... .-.|.....+....-..+.|.|+++....
T Consensus 417 -----~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 417 -----KVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred -----eEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 57799999974311 12343322111223346899999998754
No 116
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=61.98 E-value=1.7e+02 Score=30.84 Aligned_cols=116 Identities=7% Similarity=0.086 Sum_probs=79.4
Q ss_pred EeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccC
Q 045402 178 INRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDM 256 (396)
Q Consensus 178 ~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~ 256 (396)
....+++..+|++|.|.........+.+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|..
T Consensus 358 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~a---- 431 (587)
T PLN02313 358 AAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGNA---- 431 (587)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccce----
Confidence 34567899999999996542233444443 46889999999999888888776 344899999988777777653
Q ss_pred CCCCEEEEEEEeeEEecCCe--E--EEEEeecCCCCceEEeEEEEeEEEecCC
Q 045402 257 DEEGVQNVTVWKTVFTGTQN--G--LRIKSWARPSNGFVKGVRFIDAVMQNVQ 305 (396)
Q Consensus 257 ~~~~i~ni~i~n~~~~~~~~--g--i~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... + -.|-.........-..+.|.|+++....
T Consensus 432 ------~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 432 ------AAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ------eEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 67799999985321 1 1233322212233456899999997654
No 117
>PLN02304 probable pectinesterase
Probab=60.09 E-value=1.8e+02 Score=28.67 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=9.9
Q ss_pred EeecceEEeceEEecC
Q 045402 156 TNSNNVSIKGLLSLNS 171 (396)
Q Consensus 156 ~~~~nv~i~~v~i~~~ 171 (396)
...+++..+|++|.|.
T Consensus 159 v~a~~F~a~nITf~Nt 174 (379)
T PLN02304 159 VFASNFIAKNISFMNV 174 (379)
T ss_pred EECCCeEEEeeEEEec
Confidence 3356666666666664
No 118
>PLN02671 pectinesterase
Probab=59.28 E-value=1.8e+02 Score=28.44 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=39.1
Q ss_pred EEEeecceEEeceEEecCCc--------ceEEEe-ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCce
Q 045402 154 SITNSNNVSIKGLLSLNSQM--------YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDC 224 (396)
Q Consensus 154 ~~~~~~nv~i~~v~i~~~~~--------~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~ 224 (396)
.....+++..+|++|.|... .++.+. ..+.+.+.+|++....| -+-.. ...-..+||.|...=|-
T Consensus 149 v~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QD-----TLy~~-~gR~yf~~CyIeG~VDF 222 (359)
T PLN02671 149 VTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQD-----TLLDE-TGSHYFYQCYIQGSVDF 222 (359)
T ss_pred EEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEecccc-----ccEeC-CCcEEEEecEEEEeccE
Confidence 34456777777777777621 122221 34566666666665322 12111 22345566666554332
Q ss_pred EEecCCCeeEEEEeeeec
Q 045402 225 ISIGRGTNNLWIERVTCG 242 (396)
Q Consensus 225 i~~~~~s~ni~i~n~~~~ 242 (396)
| ++ .....++||++.
T Consensus 223 I-FG--~g~A~Fe~C~I~ 237 (359)
T PLN02671 223 I-FG--NAKSLYQDCVIQ 237 (359)
T ss_pred E-ec--ceeEEEeccEEE
Confidence 2 12 234566666654
No 119
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=59.13 E-value=2.3e+02 Score=29.49 Aligned_cols=116 Identities=5% Similarity=0.055 Sum_probs=79.4
Q ss_pred EEeceecEEEEeEEEEcCCCCCCCCceeee-cceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEecccc
Q 045402 177 VINRCQDVLVEGAKIIAAGDSPNTDGIHIQ-QSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKD 255 (396)
Q Consensus 177 ~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~ 255 (396)
.....+++..+|++|.|.........+.+. .+....+.+|.|....|-+..++ ..-.++||++.+.-.+-+|..
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~a--- 382 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGNA--- 382 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeecc---
Confidence 344568899999999996543233445554 46889999999999888887776 346899999988778878763
Q ss_pred CCCCCEEEEEEEeeEEecCC----eEEEEEeecCCCCceEEeEEEEeEEEecC
Q 045402 256 MDEEGVQNVTVWKTVFTGTQ----NGLRIKSWARPSNGFVKGVRFIDAVMQNV 304 (396)
Q Consensus 256 ~~~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
...|+||++.-.. ..-.|..........-..+.|.|+++...
T Consensus 383 -------~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 383 -------AAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred -------eeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecC
Confidence 6779999997531 11123322111222334688999999864
No 120
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=58.48 E-value=96 Score=24.94 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=42.7
Q ss_pred EeecceEEeceEEecC---CcceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEc-cEEecCCceEE
Q 045402 156 TNSNNVSIKGLLSLNS---QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRS-SSIKTGDDCIS 226 (396)
Q Consensus 156 ~~~~nv~i~~v~i~~~---~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n-~~i~~~dD~i~ 226 (396)
....+..+.+-.+.+. ..+++.+..+.+..+.+-.+. .. .. .+|++++.+.+..+.+ .......||+.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 5566677777666665 377888877666655555554 11 12 6788888777777776 44444555554
No 121
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=57.91 E-value=2.3e+02 Score=29.14 Aligned_cols=78 Identities=12% Similarity=0.014 Sum_probs=36.0
Q ss_pred EeecceEEeceEEecCCc----ceEEEe-ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCC
Q 045402 156 TNSNNVSIKGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRG 230 (396)
Q Consensus 156 ~~~~nv~i~~v~i~~~~~----~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~ 230 (396)
...+++..+|++|.|... .++.+. .++...+.+|.|.... |-+..+ +..-..++|.|...=|-| + |
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQ-----DTLy~~-~~RqyyrdC~I~GtVDFI-F--G 351 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQ-----DALYPH-RDRQFYRECFITGTVDFI-C--G 351 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccC-----cceeeC-CCCEEEEeeEEeeccceE-e--c
Confidence 345666666666666421 222222 3455556666665532 222222 233455555555432222 1 2
Q ss_pred CeeEEEEeeeec
Q 045402 231 TNNLWIERVTCG 242 (396)
Q Consensus 231 s~ni~i~n~~~~ 242 (396)
.....++||.+.
T Consensus 352 ~a~avFq~C~I~ 363 (509)
T PLN02488 352 NAAAVFQFCQIV 363 (509)
T ss_pred ceEEEEEccEEE
Confidence 245555666553
No 122
>PLN02497 probable pectinesterase
Probab=53.36 E-value=2.2e+02 Score=27.56 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=39.6
Q ss_pred EeecceEEeceEEecCCc-----------ceEEEe-ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCc
Q 045402 156 TNSNNVSIKGLLSLNSQM-----------YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDD 223 (396)
Q Consensus 156 ~~~~nv~i~~v~i~~~~~-----------~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD 223 (396)
...+++..+|++|.|... .++.+. ..+...+.+|++....| -+-.. ...-..+||.|...=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QD-----TLy~~-~gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQD-----TLWDS-DGRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccc-----ceeeC-CCcEEEEeCEEEeccc
Confidence 456777788888777532 122221 35566666666665332 12111 2345566666665433
Q ss_pred eEEecCCCeeEEEEeeeec
Q 045402 224 CISIGRGTNNLWIERVTCG 242 (396)
Q Consensus 224 ~i~~~~~s~ni~i~n~~~~ 242 (396)
-| ++ .....++||++.
T Consensus 186 FI-FG--~g~a~Fe~C~I~ 201 (331)
T PLN02497 186 FI-FG--SGQSIYESCVIQ 201 (331)
T ss_pred EE-cc--CceEEEEccEEE
Confidence 22 12 234566666654
No 123
>PLN02432 putative pectinesterase
Probab=53.10 E-value=2.1e+02 Score=27.20 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=18.7
Q ss_pred EeecceEEeceEEecCCc---ceEEEe-ceecEEEEeEEEEc
Q 045402 156 TNSNNVSIKGLLSLNSQM---YHIVIN-RCQDVLVEGAKIIA 193 (396)
Q Consensus 156 ~~~~nv~i~~v~i~~~~~---~~i~~~-~~~nv~I~~~~i~~ 193 (396)
...+++..+|++|+|... .++.+. ..+...+.+|++..
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G 132 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILS 132 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEec
Confidence 345667777777766521 111111 33445555555554
No 124
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=51.05 E-value=20 Score=19.23 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=5.2
Q ss_pred eEEEEccEEec
Q 045402 210 NVKIRSSSIKT 220 (396)
Q Consensus 210 nv~I~n~~i~~ 220 (396)
+++|++|.+..
T Consensus 3 ~~~i~~n~i~~ 13 (26)
T smart00710 3 NVTIENNTIRN 13 (26)
T ss_pred CEEEECCEEEe
Confidence 34444444444
No 125
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=49.39 E-value=2.3 Score=32.08 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=13.7
Q ss_pred ChhhHHHHHHHHHHhhhhcCCCC
Q 045402 1 MAKFLISLIFSIFLFTVSNNLNP 23 (396)
Q Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~ 23 (396)
||+.|++..+.+.+++++.|...
T Consensus 1 mk~klll~aviLs~~LLaGCAs~ 23 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVNE 23 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCCc
Confidence 88776544444445566666554
No 126
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=48.64 E-value=6 Score=25.67 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=7.4
Q ss_pred ChhhHHHHHHHHH
Q 045402 1 MAKFLISLIFSIF 13 (396)
Q Consensus 1 m~~~l~~~~~~~~ 13 (396)
|||.+..+++.+.
T Consensus 1 MkKi~~~~i~~~~ 13 (46)
T PF02402_consen 1 MKKIIFIGIFLLT 13 (46)
T ss_pred CcEEEEeHHHHHH
Confidence 8886544444444
No 127
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=46.58 E-value=31 Score=32.09 Aligned_cols=59 Identities=25% Similarity=0.237 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCCCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcE----EEecc
Q 045402 3 KFLISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGR----YLLGS 77 (396)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~----Y~~~~ 77 (396)
+.++++.+++++++++++ +.++++-..+++..| -|-+||.+- .+...|++|+|- |-+++
T Consensus 5 ~~~~l~~A~~A~~~~~~~--a~A~~~Vv~SIKPl~-----------~iasaI~dG---Vg~p~vlvp~gASpHdYsLrP 67 (318)
T COG4531 5 KKTLLLSALFALLLGSAP--AAAAAAVVTSIKPLG-----------FIASAIADG---VGEPEVLLPGGASPHDYSLRP 67 (318)
T ss_pred HHHHHHHHHHHHHhccch--hcccccceeeeccHH-----------HHHHHHHcc---CCCCceecCCCCCcccccCCh
Confidence 445444455555554432 233444455555544 355666432 445679999984 76665
No 128
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=46.47 E-value=30 Score=23.32 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=12.7
Q ss_pred ChhhHHHHHHHHHHhhhhcCCCCCCCC
Q 045402 1 MAKFLISLIFSIFLFTVSNNLNPSAAT 27 (396)
Q Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~~~~~ 27 (396)
|.|.|-+++..+.|..+..|.++|+.+
T Consensus 1 mlk~lkf~lv~imlaqllsctpsapye 27 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSCTPSAPYE 27 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 676543433333333444455555444
No 129
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=41.66 E-value=60 Score=31.54 Aligned_cols=11 Identities=36% Similarity=0.618 Sum_probs=8.4
Q ss_pred EEcCcEEEecc
Q 045402 67 YVPKGRYLLGS 77 (396)
Q Consensus 67 ~~p~G~Y~~~~ 77 (396)
-|.+|+|.+.+
T Consensus 81 ~lkaG~Y~l~~ 91 (342)
T TIGR00247 81 QFKAGTYLLNG 91 (342)
T ss_pred cccceEEEECC
Confidence 48899998753
No 130
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=41.51 E-value=12 Score=22.50 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=11.7
Q ss_pred ChhhHHHHHHHHHHhh
Q 045402 1 MAKFLISLIFSIFLFT 16 (396)
Q Consensus 1 m~~~l~~~~~~~~~~~ 16 (396)
|++++++|++..+++.
T Consensus 1 MKkl~i~L~l~ga~f~ 16 (33)
T PF10855_consen 1 MKKLAIILILGGAAFY 16 (33)
T ss_pred CCceeehhhhhhHHHH
Confidence 8998877777766554
No 131
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=41.45 E-value=69 Score=26.07 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=30.3
Q ss_pred CCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccccccCCCcceEEEeceeceEEec-eeE
Q 045402 62 ESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG-GAL 128 (396)
Q Consensus 62 ~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G~i 128 (396)
.|..|+||+|...+-....+ . =-.|.++|+|.+.++. + +.+ .++.|.|.| |.+
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~----~-l~~l~I~G~L~f~~~~-~-------~~L-~a~~I~V~~Gg~l 64 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTP----K-LGSLIIGGTLIFDDDR-D-------ITL-RAEYILVEGGGRL 64 (125)
T ss_pred CCCEEEECCCCEEEEcCCCh----h-eeEEEEEEEEEEccCC-C-------CEE-EEEEEEECCCCeE
Confidence 37899999997543222222 0 1234458999887651 1 111 156788887 344
No 132
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=38.71 E-value=31 Score=23.66 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=10.2
Q ss_pred ChhhHHHHHHHHHHhhhhc
Q 045402 1 MAKFLISLIFSIFLFTVSN 19 (396)
Q Consensus 1 m~~~l~~~~~~~~~~~~~~ 19 (396)
|++.+..++++..|+.+++
T Consensus 1 mk~~~~s~~ala~l~sLA~ 19 (58)
T COG5567 1 MKNVFKSLLALATLFSLAG 19 (58)
T ss_pred ChhHHHHHHHHHHHHHHHh
Confidence 7875445555444455543
No 133
>PRK02710 plastocyanin; Provisional
Probab=37.01 E-value=43 Score=26.98 Aligned_cols=9 Identities=11% Similarity=0.379 Sum_probs=5.1
Q ss_pred cEEEEcCcE
Q 045402 64 TIIYVPKGR 72 (396)
Q Consensus 64 ~~v~~p~G~ 72 (396)
..|.+++|.
T Consensus 47 ~~i~v~~Gd 55 (119)
T PRK02710 47 STLTIKAGD 55 (119)
T ss_pred CEEEEcCCC
Confidence 356666663
No 134
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=35.85 E-value=33 Score=22.89 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=3.3
Q ss_pred ChhhHHH
Q 045402 1 MAKFLIS 7 (396)
Q Consensus 1 m~~~l~~ 7 (396)
|||.+.+
T Consensus 2 mKk~i~~ 8 (48)
T PRK10081 2 VKKTIAA 8 (48)
T ss_pred hHHHHHH
Confidence 4554433
No 135
>PLN02634 probable pectinesterase
Probab=35.41 E-value=4.4e+02 Score=25.84 Aligned_cols=131 Identities=13% Similarity=0.111 Sum_probs=65.2
Q ss_pred EeecceEEeceEEecCCc---------ceEEEe-ceecEEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceE
Q 045402 156 TNSNNVSIKGLLSLNSQM---------YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCI 225 (396)
Q Consensus 156 ~~~~nv~i~~v~i~~~~~---------~~i~~~-~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i 225 (396)
...+++..+|++|.|... .++.+. ..+...+.+|++....| -+-.. ...-..+||.|...=|-|
T Consensus 146 V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QD-----TL~~~-~gR~yf~~CyIeG~VDFI 219 (359)
T PLN02634 146 VYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQD-----TLCDD-AGRHYFKECYIEGSIDFI 219 (359)
T ss_pred EECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccc-----eeeeC-CCCEEEEeeEEcccccEE
Confidence 346778888888887531 122222 45667777777776332 22221 234566677776543322
Q ss_pred EecCCCeeEEEEeeeecCC---ceEEEEeccccCCCCCEEEEEEEeeEEecCCeEEEEE-eecCCCCceEEeEEEEeEEE
Q 045402 226 SIGRGTNNLWIERVTCGPG---HGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIK-SWARPSNGFVKGVRFIDAVM 301 (396)
Q Consensus 226 ~~~~~s~ni~i~n~~~~~~---~gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~-~~~~~~~g~v~nI~~~ni~~ 301 (396)
++ .....++||++..- .|.-. ..+.. ....-....|.||++.+.. -+++. .| +....+.|.+..|
T Consensus 220 -FG--~g~a~Fe~C~I~s~~~~~g~IT-A~~R~-~~~~~~GfvF~~C~vtg~g-~~yLGRPW-----~~yarvVf~~t~l 288 (359)
T PLN02634 220 -FG--NGRSMYKDCELHSIASRFGSIA-AHGRT-CPEEKTGFAFVGCRVTGTG-PLYVGRAM-----GQYSRIVYAYTYF 288 (359)
T ss_pred -cC--CceEEEeccEEEEecCCCcEEE-eCCCC-CCCCCcEEEEEcCEEcCCc-ceEecCCC-----CCcceEEEEeccc
Confidence 22 23556777776531 23111 11111 1122345677777776542 23333 22 2244566666666
Q ss_pred ec
Q 045402 302 QN 303 (396)
Q Consensus 302 ~~ 303 (396)
.+
T Consensus 289 ~~ 290 (359)
T PLN02634 289 DA 290 (359)
T ss_pred CC
Confidence 54
No 136
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=34.42 E-value=86 Score=28.91 Aligned_cols=9 Identities=56% Similarity=1.165 Sum_probs=6.3
Q ss_pred cCcEEEecc
Q 045402 69 PKGRYLLGS 77 (396)
Q Consensus 69 p~G~Y~~~~ 77 (396)
|.|+|+++.
T Consensus 154 p~Gty~Lga 162 (250)
T PF05342_consen 154 PSGTYKLGA 162 (250)
T ss_pred CCceEEECC
Confidence 677887664
No 137
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=34.40 E-value=66 Score=24.09 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=14.6
Q ss_pred ChhhHHHHHHHHHHhhhhcCCCCCCCCCeeeEEee
Q 045402 1 MAKFLISLIFSIFLFTVSNNLNPSAATSSVYNVLR 35 (396)
Q Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d 35 (396)
|.|.|.+|-++...+++|. ++++....+++.|..
T Consensus 1 MaRRlwiLslLAVtLtVAL-AAPsQKsKRSVtveq 34 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVAL-AAPSQKSKRSVTVEQ 34 (100)
T ss_pred CchhhHHHHHHHHHHHHHh-hccccccccceeecC
Confidence 7775433333333333322 123334455666543
No 138
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=33.59 E-value=94 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.524 Sum_probs=11.5
Q ss_pred CcEEEEcCcEEEec
Q 045402 63 STIIYVPKGRYLLG 76 (396)
Q Consensus 63 g~~v~~p~G~Y~~~ 76 (396)
...|||+.+.|.+.
T Consensus 68 ~~~v~F~~d~~~l~ 81 (173)
T PRK10802 68 NNIVYFDLDKYDIR 81 (173)
T ss_pred CCeEEecCCCccCC
Confidence 56899999998764
No 139
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=33.29 E-value=49 Score=28.00 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=9.0
Q ss_pred ChhhHHHHHHHHHHh
Q 045402 1 MAKFLISLIFSIFLF 15 (396)
Q Consensus 1 m~~~l~~~~~~~~~~ 15 (396)
|+|++++++++++|+
T Consensus 1 M~~~~~~~~~~~~~~ 15 (162)
T PF12276_consen 1 MKRRLLLALALALLA 15 (162)
T ss_pred CchHHHHHHHHHHHH
Confidence 888875555554443
No 140
>COG5510 Predicted small secreted protein [Function unknown]
Probab=31.59 E-value=44 Score=21.76 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=8.9
Q ss_pred Chhh-HHHHHHHHHHhhhhcC
Q 045402 1 MAKF-LISLIFSIFLFTVSNN 20 (396)
Q Consensus 1 m~~~-l~~~~~~~~~~~~~~~ 20 (396)
|||. |+.+++++..+.+++|
T Consensus 2 mk~t~l~i~~vll~s~llaaC 22 (44)
T COG5510 2 MKKTILLIALVLLASTLLAAC 22 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 5563 3233333334555544
No 141
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=29.27 E-value=1.4e+02 Score=26.87 Aligned_cols=67 Identities=16% Similarity=0.327 Sum_probs=30.4
Q ss_pred ChhhHHH-HHHHHHHhhh-hcCCC-CCCCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEEEe
Q 045402 1 MAKFLIS-LIFSIFLFTV-SNNLN-PSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLL 75 (396)
Q Consensus 1 m~~~l~~-~~~~~~~~~~-~~~~~-~~~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~ 75 (396)
|+++|.+ +.+++|.|.+ .++.+ ++......|.| +|-+--++ +|.+--....++. -.+|.+..|.|.+
T Consensus 1 mk~~~~~~~~~~~~~f~~~~~~~~~~~~L~DGtYsV-~fkVlK~~-tde~Smmn~Y~~k------PAkv~VknGK~~V 70 (217)
T TIGR03656 1 MKKILVFAFFTTILAFIILSAGFSNSANLADGTYTI-NYTVYKAD-NDSASMANDYFEK------PAKLIVKNGKMTV 70 (217)
T ss_pred CcchhhHHHHHHHHHHhcccccccccccccCceEEE-EEEEEeCC-CCchhhHHhhccC------CcEEEEECCEEEE
Confidence 8876644 2333443322 12222 23333444444 23332222 3444444444432 3578888887654
No 142
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=28.55 E-value=1.2e+02 Score=31.18 Aligned_cols=6 Identities=67% Similarity=0.949 Sum_probs=4.3
Q ss_pred ChhhHH
Q 045402 1 MAKFLI 6 (396)
Q Consensus 1 m~~~l~ 6 (396)
|+|+|+
T Consensus 1 ~~~~~~ 6 (499)
T PRK15346 1 MKKLLI 6 (499)
T ss_pred CchhHH
Confidence 788774
No 143
>PF14262 DUF4353: Domain of unknown function (DUF4353)
Probab=27.57 E-value=5.1e+02 Score=24.17 Aligned_cols=141 Identities=19% Similarity=0.318 Sum_probs=66.6
Q ss_pred CCcEEEEc-CcEEEec------cccccCcccCccEEEEEcC-EEEeeccccccCCCcceEEEeceeceEEec--ee---E
Q 045402 62 ESTIIYVP-KGRYLLG------SVAFKGECQSSDITFQIDG-TLVAPADYRVLGQADNWLSFEGVSGVSIIG--GA---L 128 (396)
Q Consensus 62 ~g~~v~~p-~G~Y~~~------~i~l~~~~~s~~v~l~~~G-~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G--G~---i 128 (396)
.+.+|.+- +|+|.+. ++.+...-.. .++|.|+| .|.-+.. +.|+++..+.+.|.= |+ +
T Consensus 5 ~~~~vtIt~~GtY~lsGs~~~g~i~V~a~~~~-~v~lvL~gv~it~~~~--------a~I~v~~a~k~~i~la~gt~N~l 75 (264)
T PF14262_consen 5 SGSTVTITKAGTYVLSGSLSDGQIVVDAGDTD-KVRLVLDGVSITNSSG--------AAIYVKSADKVFITLAEGTTNTL 75 (264)
T ss_pred eCCEEEEcCCEEEEEEEEccCcEEEEEcCCCc-eEEEEECCeEEeCCCC--------CCEEEEeCCeEEEEEcCCCceEE
Confidence 46788884 6799763 3333321112 68899998 5554432 345555555555542 21 2
Q ss_pred -eCCCCcccccccccCCCCCCCceeEEEEeecceEEec---eEEecCCcceEEEeceecEEEEeEEEEcCCCCCCCCcee
Q 045402 129 -DAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKG---LLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIH 204 (396)
Q Consensus 129 -dg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~---v~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~ 204 (396)
|+..+ -.. ....|. -.++.-.+++|.+ +++.....++|+- .++++|.+=+|.-.. ..|||+
T Consensus 76 sd~~~~--~~~-------~~~~~~-aai~sk~dLti~G~GtL~V~g~~~~GI~s--~d~L~I~~Gti~V~a---~~dGi~ 140 (264)
T PF14262_consen 76 SDGSSY--TDS-------DDDEPD-AAIYSKGDLTINGSGTLTVTGNYKHGIHS--KDDLVITGGTITVTA---ADDGIK 140 (264)
T ss_pred ecCccc--ccc-------cCCCcc-EEEEECCCEEEcceEEEEEEecccCcEEe--CCeEEEEecEEEEEE---ccccee
Confidence 22111 100 001121 2333345666665 3444444455543 335566554444321 335554
Q ss_pred eecceeEEEEccEEe--cCCceEEec
Q 045402 205 IQQSRNVKIRSSSIK--TGDDCISIG 228 (396)
Q Consensus 205 ~~~s~nv~I~n~~i~--~~dD~i~~~ 228 (396)
-. ..|.|.+=.+. ..+|+|...
T Consensus 141 g~--d~v~I~gGti~i~a~~DGI~s~ 164 (264)
T PF14262_consen 141 GK--DSVTINGGTITITAGGDGIKSD 164 (264)
T ss_pred cc--eEEEEeCCEEEEEeCCCccccc
Confidence 42 35666655443 356666544
No 144
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=27.01 E-value=1e+02 Score=27.86 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=11.0
Q ss_pred ChhhHHHHHHHHHHhhhhcC
Q 045402 1 MAKFLISLIFSIFLFTVSNN 20 (396)
Q Consensus 1 m~~~l~~~~~~~~~~~~~~~ 20 (396)
|+|.++++.+.++++.+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (254)
T TIGR01098 1 MKRLLALLAALLGASLAAAC 20 (254)
T ss_pred ChhHHHHHHHHHHHHHHhhc
Confidence 88866544444444445554
No 145
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.55 E-value=47 Score=28.17 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=18.0
Q ss_pred ChhhHHHHHHHHHHhhhhcCCCCCCCCCeeeEE
Q 045402 1 MAKFLISLIFSIFLFTVSNNLNPSAATSSVYNV 33 (396)
Q Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 33 (396)
|+.+++.+++.++|+.|+.|+.+.......+-|
T Consensus 1 r~~s~~r~~~~v~lL~LagCaTaP~~~~N~Cav 33 (197)
T COG4764 1 RTPSMMRLVFAVVLLALAGCATAPSQVNNVCAV 33 (197)
T ss_pred CCchhHHHHHHHHHHHHhhcccCCcCccchhhh
Confidence 445555566666666777665544333444433
No 146
>PRK13697 cytochrome c6; Provisional
Probab=25.37 E-value=72 Score=24.99 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=7.0
Q ss_pred ChhhHHHHHHHH
Q 045402 1 MAKFLISLIFSI 12 (396)
Q Consensus 1 m~~~l~~~~~~~ 12 (396)
|+|++.+.++++
T Consensus 1 m~~~~~~~~~~~ 12 (111)
T PRK13697 1 MKKILSLVLLGL 12 (111)
T ss_pred ChhHHHHHHHHH
Confidence 888774443333
No 147
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=25.24 E-value=1.3e+02 Score=29.17 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=17.6
Q ss_pred CCCCCCCeeeEEeeccccCCCCcccHHHHHHHHHHH
Q 045402 22 NPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAA 57 (396)
Q Consensus 22 ~~~~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a 57 (396)
..+.+..+.++|..+|-- .++. +.+.+.+.
T Consensus 25 ~~a~a~~~~l~v~~w~gy----~~~~--~~~~F~k~ 54 (363)
T COG0687 25 AAAAAEGKTLNVYNWGGY----IDPA--LLKPFEKE 54 (363)
T ss_pred hhhhhhcCEEEEEccccc----CCHH--HHHHHHHH
Confidence 345556667999888733 2322 66666543
No 148
>PRK09810 entericidin A; Provisional
Probab=24.38 E-value=73 Score=20.58 Aligned_cols=6 Identities=17% Similarity=0.805 Sum_probs=3.0
Q ss_pred ChhhHH
Q 045402 1 MAKFLI 6 (396)
Q Consensus 1 m~~~l~ 6 (396)
|+|++.
T Consensus 2 Mkk~~~ 7 (41)
T PRK09810 2 MKRLIV 7 (41)
T ss_pred hHHHHH
Confidence 555553
No 149
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=23.70 E-value=2.5e+02 Score=28.24 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=14.9
Q ss_pred CCCeeeEEeeccccCCCCcccHHHHHHHHHHH
Q 045402 26 ATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAA 57 (396)
Q Consensus 26 ~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a 57 (396)
++.+.+-+.==|+..-+ ...-+|++|+.|
T Consensus 24 ~~~~v~vi~i~g~I~~~---s~~~l~r~l~~A 52 (436)
T COG1030 24 AEKKVYVIEIDGAIDPA---SADYLQRALQSA 52 (436)
T ss_pred cCCeEEEEEecCccCHH---HHHHHHHHHHHH
Confidence 44445444444555333 124577777765
No 150
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.60 E-value=58 Score=27.09 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=10.4
Q ss_pred ChhhHHHHHHHHHHhhh
Q 045402 1 MAKFLISLIFSIFLFTV 17 (396)
Q Consensus 1 m~~~l~~~~~~~~~~~~ 17 (396)
|+||+....+.+++++.
T Consensus 1 M~rf~~i~lL~~A~lls 17 (166)
T COG3495 1 MNRFTSITLLAAALLLS 17 (166)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 89987555555553433
No 151
>PRK15240 resistance to complement killing; Provisional
Probab=23.57 E-value=57 Score=28.65 Aligned_cols=11 Identities=27% Similarity=0.470 Sum_probs=7.0
Q ss_pred ChhhHHHHHHH
Q 045402 1 MAKFLISLIFS 11 (396)
Q Consensus 1 m~~~l~~~~~~ 11 (396)
|||.|+++.++
T Consensus 1 Mkk~~~~~~~~ 11 (185)
T PRK15240 1 MKKIVLSSLLL 11 (185)
T ss_pred CchhHHHHHHH
Confidence 99987544443
No 152
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=22.85 E-value=53 Score=27.49 Aligned_cols=36 Identities=31% Similarity=0.590 Sum_probs=22.3
Q ss_pred CCCccc--HHHHHHHHHHHhhcCCCcEEEEcCcEE--Eeccc
Q 045402 41 NGVIDS--TEAFAKAWAAACASNESTIIYVPKGRY--LLGSV 78 (396)
Q Consensus 41 dg~tdd--t~aiq~Ai~~a~~~~~g~~v~~p~G~Y--~~~~i 78 (396)
||.+.+ .+|++..|+++|+ ..+++.|-+|.| .+++-
T Consensus 104 dGl~~~av~~Amr~Gi~Aa~~--~~Gv~~IsAGNYGGkLG~~ 143 (150)
T PF02741_consen 104 DGLSEEAVAEAMRAGIEAACA--VPGVVRISAGNYGGKLGPY 143 (150)
T ss_dssp EESSHHHHHHHHHHHHHHHTT--STTEEEEE---STTSSSSE
T ss_pred cCCCHHHHHHHHHHHHHHHhc--CCCeEEEecCCcCCccCcc
Confidence 454433 4777888887763 467999999999 56653
No 153
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=22.76 E-value=1e+02 Score=29.48 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=41.2
Q ss_pred ChhhHHHHHHHHHHhhhhcCCCCCCCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcC-cEEEecc--
Q 045402 1 MAKFLISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPK-GRYLLGS-- 77 (396)
Q Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~-G~Y~~~~-- 77 (396)
|+|+|.+|+++++.+. +.++ .+++..++ +.-=.++|...|-+.|+.=|= . -...|+.-| |.|--..
T Consensus 1 Mrr~l~lll~~~l~l~-s~~a-v~A~~~~~---~~VIlvsDn~aD~~lA~~iae--l----lNA~Vlttpwg~ynes~~~ 69 (337)
T COG2247 1 MRRLLMLLLASLLALS-SPPA-VSAQSQNT---TVVILVSDNEADLLLALPIAE--L----LNAPVLTTPWGIYNESVLD 69 (337)
T ss_pred CccHHHHHHHHHHHHh-cchh-hhhhhcCc---eEEEEecchHHHHHHhhHHHH--H----hCCeeEecCcccccHHHHH
Confidence 8998865555555333 2221 22222221 011134555556665533221 1 122455766 9985432
Q ss_pred --ccccCcccCccEEEEEcCEEEeeccc
Q 045402 78 --VAFKGECQSSDITFQIDGTLVAPADY 103 (396)
Q Consensus 78 --i~l~~~~~s~~v~l~~~G~l~~~~~~ 103 (396)
+.+. . ...|.+.|.+--+.++
T Consensus 70 eI~~ln----p-d~VLIIGGp~AVs~~y 92 (337)
T COG2247 70 EIIELN----P-DLVLIIGGPIAVSPNY 92 (337)
T ss_pred HHHhhC----C-ceEEEECCCCcCChhH
Confidence 2332 2 5667777765555444
No 154
>PRK03577 acid shock protein precursor; Provisional
Probab=22.36 E-value=87 Score=24.15 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=9.0
Q ss_pred ChhhHHHHHHHHH
Q 045402 1 MAKFLISLIFSIF 13 (396)
Q Consensus 1 m~~~l~~~~~~~~ 13 (396)
|++.|.+++..++
T Consensus 1 MKKVLAlvVAa~~ 13 (102)
T PRK03577 1 MKKVLALVVAAAM 13 (102)
T ss_pred ChHHHHHHHHHHH
Confidence 8997766665555
No 155
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=22.05 E-value=1.1e+02 Score=26.31 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=6.3
Q ss_pred ChhhHHHHHH
Q 045402 1 MAKFLISLIF 10 (396)
Q Consensus 1 m~~~l~~~~~ 10 (396)
|||.++.+++
T Consensus 1 Mkk~~~~~~~ 10 (174)
T PRK15209 1 MKKVVFALSA 10 (174)
T ss_pred CchHHHHHHH
Confidence 8987644433
No 156
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=21.69 E-value=4.1e+02 Score=21.02 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=6.6
Q ss_pred cceEEeceEEec
Q 045402 159 NNVSIKGLLSLN 170 (396)
Q Consensus 159 ~nv~i~~v~i~~ 170 (396)
.+++++|+++.+
T Consensus 45 ~~~~~~G~~~~~ 56 (146)
T smart00722 45 NDVRVDGITIGG 56 (146)
T ss_pred CCCEEECeEEEe
Confidence 444566666554
No 157
>TIGR02001 gcw_chp conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.
Probab=21.64 E-value=49 Score=30.49 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=13.8
Q ss_pred eeccccCCCCcccHHHHHHHHH
Q 045402 34 LRFGAKGNGVIDSTEAFAKAWA 55 (396)
Q Consensus 34 ~d~Ga~~dg~tddt~aiq~Ai~ 55 (396)
.||=-+|=.++++.+|||-.++
T Consensus 42 SdY~~RGisqt~~~pavQg~~~ 63 (243)
T TIGR02001 42 SDYVFRGVSQTNSDPAIQGGLD 63 (243)
T ss_pred EeeEEeCcccCCCCcEEEeEEE
Confidence 3566665556676777776664
No 158
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=21.58 E-value=75 Score=27.80 Aligned_cols=13 Identities=31% Similarity=0.582 Sum_probs=8.0
Q ss_pred ChhhHHHHHHHHH
Q 045402 1 MAKFLISLIFSIF 13 (396)
Q Consensus 1 m~~~l~~~~~~~~ 13 (396)
|||+++..+++++
T Consensus 1 m~k~~~a~~~~l~ 13 (180)
T PF07437_consen 1 MKKFLLASAAALL 13 (180)
T ss_pred CchHHHHHHHHHH
Confidence 9998854444333
No 159
>CHL00132 psaF photosystem I subunit III; Validated
Probab=21.48 E-value=1.4e+02 Score=25.99 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=6.7
Q ss_pred ChhhHHHHHHHHH
Q 045402 1 MAKFLISLIFSIF 13 (396)
Q Consensus 1 m~~~l~~~~~~~~ 13 (396)
|+|++. ++++++
T Consensus 1 mrrl~~-l~l~~~ 12 (185)
T CHL00132 1 MKKFNL-LFLLLA 12 (185)
T ss_pred ChhHHH-HHHHHH
Confidence 888763 333333
No 160
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=20.78 E-value=82 Score=23.22 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=7.9
Q ss_pred ChhhHHHHHHHHHHh
Q 045402 1 MAKFLISLIFSIFLF 15 (396)
Q Consensus 1 m~~~l~~~~~~~~~~ 15 (396)
|||.+..+.+.++|.
T Consensus 1 MKK~~~~~~~i~~l~ 15 (80)
T PF11106_consen 1 MKKIIYGLFAILALA 15 (80)
T ss_pred ChhHHHHHHHHHHHH
Confidence 899774333333333
No 161
>PRK11443 lipoprotein; Provisional
Probab=20.71 E-value=80 Score=25.82 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=5.9
Q ss_pred ChhhHHHHHHH
Q 045402 1 MAKFLISLIFS 11 (396)
Q Consensus 1 m~~~l~~~~~~ 11 (396)
||+++++++++
T Consensus 1 Mk~~~~~~~~~ 11 (124)
T PRK11443 1 MKKFIAPLLAL 11 (124)
T ss_pred ChHHHHHHHHH
Confidence 87666433333
No 162
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=20.51 E-value=1e+02 Score=20.19 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=7.0
Q ss_pred ChhhHHHHHHHH
Q 045402 1 MAKFLISLIFSI 12 (396)
Q Consensus 1 m~~~l~~~~~~~ 12 (396)
|||+|+--++.+
T Consensus 1 mkkll~~slltl 12 (48)
T PF05968_consen 1 MKKLLIGSLLTL 12 (48)
T ss_pred CchHHHhHHHHH
Confidence 888875433333
No 163
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.45 E-value=1e+02 Score=27.49 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=11.2
Q ss_pred ChhhHHHHHHHHHHhhhhcCC
Q 045402 1 MAKFLISLIFSIFLFTVSNNL 21 (396)
Q Consensus 1 m~~~l~~~~~~~~~~~~~~~~ 21 (396)
|.|.+.+++++++++++++|.
T Consensus 3 ~~~~~~~~l~~~As~LL~aC~ 23 (206)
T COG3017 3 MMKRLLFLLLALASLLLTACT 23 (206)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 344444566666655565553
No 164
>PRK15396 murein lipoprotein; Provisional
Probab=20.43 E-value=14 Score=27.54 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=11.8
Q ss_pred Chh-hHHHHHHHHHHhhhhcCCCC
Q 045402 1 MAK-FLISLIFSIFLFTVSNNLNP 23 (396)
Q Consensus 1 m~~-~l~~~~~~~~~~~~~~~~~~ 23 (396)
|.| .|++..+++.++++++|...
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCc
Confidence 765 34334444445566666543
No 165
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=20.29 E-value=1.3e+02 Score=24.09 Aligned_cols=14 Identities=0% Similarity=-0.297 Sum_probs=7.6
Q ss_pred CeeeEEeeccccCC
Q 045402 28 SSVYNVLRFGAKGN 41 (396)
Q Consensus 28 ~~~~~v~d~Ga~~d 41 (396)
.-.+.++..|+.-+
T Consensus 32 nyyvki~~~~~~~~ 45 (114)
T TIGR01655 32 NYYIKIKNDYKEVP 45 (114)
T ss_pred ccEEEEeeCCEEEe
Confidence 33555666666544
Done!