BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045403
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UW3|A Chain A, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
pdb|3UW3|B Chain B, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
Length = 377
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 91 MHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131
M + G P + LC +G MR HS+AL ++ KD+ D
Sbjct: 261 MGEPGSVPVDGLC----VRIGAMRCHSQALTIKLKKDVPLD 297
>pdb|2V5V|A Chain A, W57e Flavodoxin From Anabaena
pdb|2V5V|B Chain B, W57e Flavodoxin From Anabaena
Length = 169
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 9 GC-FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
GC E +L D+E Y + D V N L AY TGD
Sbjct: 53 GCPTENIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 37 LCAYC-----RTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK-------EKMYMLA 84
LC +C RTG + +V +V + L I PD++ F +++K ++ E+ Y
Sbjct: 229 LCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTEEQYRFL 288
Query: 85 YRTMVDM 91
Y T+ M
Sbjct: 289 YHTVAQM 295
>pdb|1OBV|A Chain A, Y94f Flavodoxin From Anabaena
Length = 169
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|1QHE|A Chain A, Energetics Of A Hydrogen Bond (Charged And Neutral) And
Of A Cation-Pi Interaction In Apoflavodoxin
pdb|1FTG|A Chain A, Structure Of Apoflavodoxin: Closure Of A
TyrosineTRYPTOPHAN AROMATIC Gate Leads To A Compact
Fold
Length = 168
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 60 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 90
>pdb|1FLV|A Chain A, Structure Of The Oxidized Long Chain Flavodoxin From
Anabaena 7120 At 2 Angstroms Resolution
pdb|1RCF|A Chain A, Structure Of The Trigonal Form Of Recombinant Oxidized
Flavodoxin From Anabaena 7120 At 1.40 Angstroms
Resolution
Length = 169
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena
pdb|1DX9|B Chain B, W57a Apoflavodoxin From Anabaena
pdb|1DX9|C Chain C, W57a Apoflavodoxin From Anabaena
pdb|1DX9|D Chain D, W57a Apoflavodoxin From Anabaena
Length = 169
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|2V5U|A Chain A, I92a Flavodoxin From Anabaena
pdb|2V5U|B Chain B, I92a Flavodoxin From Anabaena
Length = 169
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|3ESZ|A Chain A, K2ak3a Flavodoxin From Anabaena
pdb|3ESZ|B Chain B, K2ak3a Flavodoxin From Anabaena
Length = 169
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|1OBO|A Chain A, W57l Flavodoxin From Anabaena
pdb|1OBO|B Chain B, W57l Flavodoxin From Anabaena
Length = 169
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|2KQU|A Chain A, F98n Apoflavodoxin From Anabaena Pcc 7119
Length = 169
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|3ESX|A Chain A, E16ke61kd126kd150k Flavodoxin From Anabaena
pdb|3ESX|B Chain B, E16ke61kd126kd150k Flavodoxin From Anabaena
Length = 169
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 KLQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|3ESY|A Chain A, E16ke61k Flavodoxin From Anabaena
pdb|3ESY|B Chain B, E16ke61k Flavodoxin From Anabaena
pdb|3ESY|C Chain C, E16ke61k Flavodoxin From Anabaena
pdb|3ESY|D Chain D, E16ke61k Flavodoxin From Anabaena
Length = 169
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 KLQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,136,141
Number of Sequences: 62578
Number of extensions: 145429
Number of successful extensions: 387
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 13
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)