BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045403
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910,
chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2
SV=1
Length = 664
Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 104/122 (85%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MISA CR F+EAK+L+RD E Y+K D+V+LN+MLCAYCR G+MESV+ +M+K+DE A
Sbjct: 383 MISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQA 442
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPDYNTFHILIKYF KEK+++LAY+T +DMH KGH+ EEELCSSLI+HLGK+RA +EA
Sbjct: 443 VSPDYNTFHILIKYFIKEKLHLLAYQTTLDMHSKGHRLEEELCSSLIYHLGKIRAQAEAF 502
Query: 121 CL 122
+
Sbjct: 503 SV 504
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C+ G + A L + E K K D++ N+++ +C G + ++R + +
Sbjct: 269 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
ISP+ TF +LI F KE A + + +M ++G P +SLI K EA+
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC G +++ +L RD + +VV + ++ ++ + G + +++++ +
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRG 363
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
I+P+ T++ LI F KE A + + M KG P+
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPD 402
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I +F + G EA QL ++ + + + NS++ +C+ +E I ++ +
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 61 ISPDYNTFHILIKYF 75
PD TF+ILI +
Sbjct: 399 CDPDIMTFNILINGY 413
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 36/162 (22%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ FC+ G E AK+L ++ ++ + D+V +L C G++E + + K+++
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503
Query: 61 ISPDYNTFHILIKY------------------FRKEKMYMLAYRTMVD------------ 90
+ D + I+I + K+ AY M+
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKAD 563
Query: 91 -----MHKKGHQPEEELCSSLI-FHLGKMRAHSEALCLQHVK 126
M ++GH P+E + LI HLG A + A ++ +K
Sbjct: 564 ILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMK 605
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 47/99 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC+ EEA Q+ +K D++ N ++ YC+ ++ + + R++
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
+ + T++ L++ F + +A + +M + +P+
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/72 (18%), Positives = 38/72 (52%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ +C+ ++ +L R+ + + V N+++ +C++G +E + +++
Sbjct: 409 LINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRR 468
Query: 61 ISPDYNTFHILI 72
+ PD ++ IL+
Sbjct: 469 VRPDIVSYKILL 480
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 51/122 (41%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+ SA + +E L + E+K + + L+ M+ +CR + M K+ +L
Sbjct: 94 LFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLG 153
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD F+ L+ E A + M + GH+P ++L+ L S+A+
Sbjct: 154 YEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAV 213
Query: 121 CL 122
L
Sbjct: 214 VL 215
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++ C+ G EEA +L +FEA D V +++ AYC++G+M+ +++++
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ P TF++L+ F M + + M KG P +SL+
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+IS FC+ G EA +L + K + D V ++ YC+ G M+ V + +
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
SP+ T+ LI KE A + +M K G QP +S++ L K EA+
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 121 CL 122
L
Sbjct: 512 KL 513
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 46/98 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C+ G + A +L + + ++ NS++ C++G++E + ++ + +
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
++ D T+ L+ + K A + +M KG QP
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 559
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C+ G +EA L E K DV+ ++++ YCR G+++ V ++ +
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL---GKMRAHS 117
+ P+ + +I + A +M ++G P+ + ++LI G +RA S
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAAS 371
Query: 118 EALCLQHVKDIAKD 131
+ H +DI D
Sbjct: 372 KFFYEMHSRDITPD 385
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++ FC G E+ ++L AK + NS++ YC ++++ + + +
Sbjct: 567 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 626
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ PD T+ L+K K + A+ +M KG S LI K + EA
Sbjct: 627 VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEA 685
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC+ G A + + ++ DV+ +++ +C+ GDM + ++
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL---GKMRAHS 117
+ PD TF LI + K A+R M + G P ++LI L G + + +
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476
Query: 118 EAL 120
E L
Sbjct: 477 ELL 479
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/102 (17%), Positives = 47/102 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ +C + A + +D ++ D +++ +C+ +M+ + +++
Sbjct: 602 LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG 661
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEEL 102
S +T+ +LIK F K K ++ A M ++G ++E+
Sbjct: 662 FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEI 703
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 48/107 (44%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I CR EA++ + + D V+ +++ +C+ GD+ + ++
Sbjct: 322 IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 381
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
I+PD T+ +I F + + A + +M KG +P+ + LI
Sbjct: 382 ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 428
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI C+G +A+ + + E K ++ + NSML Y D + + V +++ E
Sbjct: 898 MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG 957
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ PD T++ LI + +++ Y M M G P+ + SLI GK + +A
Sbjct: 958 LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQA 1016
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MIS + R G EA++L + E K D V NS+L A+ R + E V V +++ ++
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG 397
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK-KGHQPEEELCSSLIFHLGKMRAHSEA 119
D T++ +I + K+ LA + DM G P+ + LI LGK EA
Sbjct: 398 FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEA 457
Query: 120 LCL 122
L
Sbjct: 458 AAL 460
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++SA R + A ++ D EA + D+ N+M+ Y R G + +L+
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T++ L+ F +E+ M K G +E +++I GK L
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLD--L 420
Query: 121 CLQHVKDI 128
LQ KD+
Sbjct: 421 ALQLYKDM 428
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+ISAF + C E+A+QL + +K K D ++M+ +G +++ +
Sbjct: 1003 LISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAG 1062
Query: 61 ISPDYNTFHILI 72
I P T H+L+
Sbjct: 1063 IEPTLATMHLLM 1074
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTM 88
D N+++ YCR E +M+++ L + P +T+ LI F K+K A +
Sbjct: 961 DETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLF 1020
Query: 89 VDMHKKG 95
++ KG
Sbjct: 1021 EELLSKG 1027
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 45/107 (42%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++SA+ + GC+E A+ + V +N +L A C G +E + V+ +L ++
Sbjct: 793 LMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMG 852
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
++ +++ F + + M G+ P L +I
Sbjct: 853 FKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMI 899
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 59/107 (55%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I CR EA +L K K D+V++N+++ +C G+M+ +++++D ++
Sbjct: 438 LIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMS 497
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
I+PD T++ L++ E + A M +M ++G +P+ ++LI
Sbjct: 498 INPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLI 544
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ C G FEEA++L + + + K D + N+++ Y + GD + V ++ L
Sbjct: 508 LMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLG 567
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRA 115
+P T++ L+K K + LA + +M +G P + S+I + + A
Sbjct: 568 FNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDA 622
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ F G E A+ + + ++K + D+ N +L C G V+R++ E+
Sbjct: 266 LVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRAS---EVLREMKEIG 322
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL 110
+ PD +++ILI+ +A+ +M K+G P ++LI L
Sbjct: 323 LVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGL 372
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C G E A QL +F + + +V+ + ++ +C G E ++ ++++
Sbjct: 208 LIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKER 267
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
I PD TF+ILI RK+ + M KG +P +++ L + + EA
Sbjct: 268 IEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEA 326
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC G FEEA +L E + + D + N ++ + G +E I ++ ++
Sbjct: 243 LIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKG 302
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
P+ T+ ++ +K + A M M G +P
Sbjct: 303 CEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMISWGMRP 340
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++S FCR G A ++ ++ E + K V ++ + R+ +ME I + ++EL
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD +T+ +LI F + A R M +K +P E + +++I LG + S
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMI--LGYCKEGSSYR 496
Query: 121 CLQHVKDIAKDRCA 134
L+ +K++ + A
Sbjct: 497 ALKLLKEMEEKELA 510
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 50/107 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC G +A L RD +++ +V N ++ +CR GD ++++++E
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
I P T+ ILI F + A + + M + G P+ S LI
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 51/104 (49%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC G EA +L + K + + V+ N+M+ YC+ G + ++++++E
Sbjct: 449 LIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE 508
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCS 104
++P+ ++ +I+ KE+ A R + M G P + S
Sbjct: 509 LAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILS 552
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 51/107 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I CR EA ++ ++ +++ N+++ +C G + + + R L
Sbjct: 309 LIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRG 368
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+SP T++IL+ F ++ A + + +M ++G +P + + LI
Sbjct: 369 LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 47/119 (39%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I F R E+A QL E DV + ++ +C G M + + + E
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
P+ ++ +I + KE A + + +M +K P +I L K R EA
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEA 532
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ CR G EEA + ++ + D+V NS++ CR G +E + + RKL
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664
Query: 61 ISPDYNTFHILIKYFRK 77
I PD TF+ L+ + K
Sbjct: 665 IPPDTVTFNTLMSWLCK 681
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 52/107 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+ISAFC+ EA ++ R+ K K DV NS++ C +++ + ++R +
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ + T++ LI F + A + + +M +G +E +SLI
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLI 571
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 50/107 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+AF R G +EA++L + + D + NS++ CR G+++ + K+
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+P + +ILI + M A +M +G P+ +SLI
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLI 641
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + + G A ++ D K K +V ++ +C+ G ++ +V+ ++
Sbjct: 395 LIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADG 454
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ F+ LI F KE A +M +KG +P+ +SLI L ++ AL
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 514
Query: 121 CL 122
L
Sbjct: 515 WL 516
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59
+I F G ++AK + D Y DV NS++ Y + G + + V+ +
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 60 AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
P+ ++ IL+ F K AY + +M G +P
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKP 457
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 47/112 (41%)
Query: 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT 67
G C + A + D ++ + ++ A+C +++S + ++R + + P+
Sbjct: 195 GNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVI 254
Query: 68 FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ LI K A + + +M G P+ E + +I L K +EA
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEA 306
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C+ G + A L + E K K D+++ +++ +C G + ++R + +
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I+PD F LI F KE A +M ++G P+ +SLI K +A
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA- 371
Query: 121 CLQHVKDIAKDRCAMPFMRKFFIF 144
H+ D+ + P +R F I
Sbjct: 372 --NHMLDLMVSKGCGPNIRTFNIL 393
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC G E AK+L ++ ++ + D+V +L C G+ E + + K+++
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ D ++I+I A+ + KG +P+ + + +I L K + SEA
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEA 546
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I F + G EA++L ++ + D V S++ +C+ ++ H++ +
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIF---HLGKMRAHS 117
P+ TF+ILI + K + M +G + ++LI LGK+
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442
Query: 118 E 118
E
Sbjct: 443 E 443
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C ++A L K K DV N M+ C+ G + + RK++E
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Query: 61 ISPDYNTFHILIK 73
SP+ T++ILI+
Sbjct: 558 HSPNGCTYNILIR 570
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/72 (19%), Positives = 35/72 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ +C+ ++ +L R + D V N+++ +C G +E + +++
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452
Query: 61 ISPDYNTFHILI 72
+ PD ++ IL+
Sbjct: 453 VRPDIVSYKILL 464
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 49/122 (40%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+ S R ++ L + E K +++ L+ M+ CR + M K+ +L
Sbjct: 78 LFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLG 137
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD TF LI E A + M + GH+P ++L+ L S+A+
Sbjct: 138 YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAV 197
Query: 121 CL 122
L
Sbjct: 198 LL 199
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 1 MISAFCRGGCFEEAKQLA-RDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59
+++ C G +A L R E + +V +L C++G + ++RK++E
Sbjct: 183 LVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY-GPVLKVMCKSGQTALAMELLRKMEER 241
Query: 60 AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
I D + I+I K+ A+ +M KG + + + ++LI
Sbjct: 242 KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLI 289
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ F + G EA ++ R+ VV N+++ +C TG ME I V+ + E
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
+SPD ++ ++ F + A R +M +KG +P+ SSLI + R EA
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ C G E+A + D + K DVV +++L +CR+ D++ + V R++ E
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
I PD T+ LI+ F +++ A +M + G P+E ++LI
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALI 527
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 49/107 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I +C+ G F +A + + V+ S++ + C+ G+M + + ++
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ P+ T+ L+ F ++ AYR + +M+ G P ++LI
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI 422
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I +C+ ++ +L R K + +++ N ++ CR G M+ V V+ +++
Sbjct: 246 LIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG 305
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
S D T++ LIK + KE + A +M + G P +SLI
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLI 352
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++S FCR +EA ++ R+ K K D + +S++ +C + + ++ +
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ PD T+ LI + E A + +M +KG P+ S LI L K EA
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREA 574
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC G + A L E K +VV N+++ YC+ ++ ++R +
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG 270
Query: 61 ISPDYNTFHILIKYF-RKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ P+ +++++I R+ +M +++ + +M+++G+ +E ++LI
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSF-VLTEMNRRGYSLDEVTYNTLI 317
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC +EA L + D +++ AYC GD+E + + ++ E
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ PD T+ +LI K+ A R ++ + + P + +LI
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLI 597
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+I FC G EA Q+ K K D N M+ +CR GD+
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDI 656
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FCRGG E A ++ ++ + + D V ++++C C+ G + +R++
Sbjct: 421 LIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAG 480
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
I PD T+ +++ F K+ ++ + +M GH P
Sbjct: 481 IKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPS 519
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 51/100 (51%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++ FC+ G A+ + + + D + +++ +CR GD+E+ + + +++D+
Sbjct: 386 LVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNG 445
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEE 100
I D F L+ KE + A R + +M + G +P++
Sbjct: 446 IELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDD 485
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 55/107 (51%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++ FC+ G +A+++ + + + VV N+++ YC+ G+++ + ++++
Sbjct: 246 LMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSR 305
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
PD T+ LI KE A+ +M K+G P + + ++LI
Sbjct: 306 TRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLI 352
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 50/107 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I R G + K+ + +K + D+VL N+++ +C+ GD+ + +++ +
Sbjct: 351 LIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ PD T+ LI F + A +M + G + + S+L+
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALV 457
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
M+ AFC+ G + +L ++ ++ VV N +L C+ G M++ ++ + +
Sbjct: 491 MMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIG 550
Query: 61 ISPDYNTFHILI-----------KYFRKEKMYMLA----YRTMVD 90
+ PD T++ L+ +Y +K ++ ++A Y+++V+
Sbjct: 551 VVPDDITYNTLLEGHHRHANSSKRYIQKPEIGIVADLASYKSIVN 595
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 48/107 (44%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ +C+ G +E +L E + DV ++++ A C+ M+ + ++ +
Sbjct: 281 LINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRG 340
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ P+ F LI + L + M KG QP+ L ++L+
Sbjct: 341 LIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLV 387
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 52/107 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + C+ G F++A L + E K K DVV +S++ C G + ++R++
Sbjct: 251 VIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRN 310
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
I PD TF LI F KE + A +M +G P+ +SLI
Sbjct: 311 IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 357
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I F + G EAK+L + + D + NS++ +C+ E+ +H ++ +L
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK----ENCLHEANQMFDLM 376
Query: 61 IS----PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL---GKM 113
+S PD T+ ILI + K K R ++ KG P ++L+ GK+
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436
Query: 114 RAHSE 118
A E
Sbjct: 437 NAAKE 441
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C ++A L K K DVV N M+ C+ G + + RK+ E
Sbjct: 496 IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555
Query: 61 ISPDYNTFHILIK 73
+PD T++ILI+
Sbjct: 556 CTPDDFTYNILIR 568
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 46/98 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC+ C EA Q+ +K + D+V + ++ +YC+ ++ + + R++
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
+ P+ T++ L+ F + A +M +G P
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 453
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 49/107 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C G +++ ++ R+ + DVV ++++ + + G + + ++
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
I+PD T++ LI F KE A + M KG +P+ S LI
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 39/72 (54%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+++C+ ++ +L R+ +K + + N+++ +C++G + + + +++
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 61 ISPDYNTFHILI 72
+ P T+ IL+
Sbjct: 451 VPPSVVTYGILL 462
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ FC+ G AK+L ++ ++ VV +L C G++ + + K+ +
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
++ ++I+I A+ + KG +P+ + +I L K + SEA
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEAD 545
Query: 121 CLQHVKDIAKDRC 133
L + + +D C
Sbjct: 546 ML--FRKMKEDGC 556
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 49/122 (40%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+ SA R ++ + E ++D+ + M+ YCR + V+ + +L
Sbjct: 76 LCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLG 135
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD TF L+ F E A + M + +P+ S+LI L SEAL
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195
Query: 121 CL 122
L
Sbjct: 196 VL 197
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I F R G F+EA+++ K K DVV N+M+ +CR+G ++ + M +++E
Sbjct: 491 LIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEH 550
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ PD T+ +I + K++ A + M K +P +SLI
Sbjct: 551 LVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLI 597
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ C G E ++L K ++V N+++ YC+ GD+E+ V ++L
Sbjct: 211 LVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKG 270
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95
P TF +I F KE ++ + R + ++ ++G
Sbjct: 271 FMPTLETFGTMINGFCKEGDFVASDRLLSEVKERG 305
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI FCR G +EA ++ D ++++ Y + DM + I + R +++
Sbjct: 526 MIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNK 585
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112
P+ T+ LI F + + +A T +M + P ++LI L K
Sbjct: 586 CKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAK 637
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG----DMESVIHVMRKL 56
MI+ FC+ G F + +L + + + + V LN+++ A R G ES+ ++
Sbjct: 281 MINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIAN- 339
Query: 57 DELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
PD T++ILI KE +A + + KKG P + LI
Sbjct: 340 ---DCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLI 387
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I A+C+ ++ A +L + K D+V ++ +G M+ +++ KL +
Sbjct: 386 LIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRG 445
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+SPD +++L+ K ++ A +M + P+ + ++LI
Sbjct: 446 VSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLI 492
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+IS+ C G +E ++LA FE Y N+++ C+ D + +MR++ E
Sbjct: 222 VISSMCEVGLVKEGRELAERFEPVVSVY-----NALINGLCKEHDYKGAFELMREMVEKG 276
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
ISP+ ++ LI LA+ + M K+G P SSL+
Sbjct: 277 ISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLV 323
Score = 35.8 bits (81), Expect = 0.090, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 5 FCRGGCFEEA---KQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI 61
F RG F+ Q+ R F + + VV N+++ +C G++ + V ++E+
Sbjct: 327 FLRGTTFDALDLWNQMIRGFGLQPN---VVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGC 383
Query: 62 SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALC 121
SP+ T+ LI F K A M G P + ++++ L + EA
Sbjct: 384 SPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAES 443
Query: 122 LQHVKDIAKDRCA 134
L ++ ++K+ CA
Sbjct: 444 L--IEIMSKENCA 454
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKY--DVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58
+I A+C+ G E A Q+ K+ DV+ +++ CR+ E + ++ ++
Sbjct: 569 IILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMIS 628
Query: 59 LAISPDYNTFHILIKYF 75
I P T+ +LI F
Sbjct: 629 AGIVPSIATWSVLINCF 645
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI+ + G ++AK++ R+ K +V NSM+ C G+ ++++++
Sbjct: 365 MITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRG 424
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH 96
+P++ + L+ Y RK A + + +M KKGH
Sbjct: 425 CNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKGH 460
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I R G E K + + DVV M+ Y +G+++ + R++
Sbjct: 330 LIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKG 389
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
P+ T++ +I+ + A + +M +G P + S+L+ +L K SEA
Sbjct: 390 QLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEA 448
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTM 88
DV+ N +L R G M+ + ++ SPD T++IL+ K + A T+
Sbjct: 253 DVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTL 312
Query: 89 VDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRC 133
M + G P ++LI L RA + C + ++ K C
Sbjct: 313 NHMKEVGIDPSVLHYTTLIDGLS--RAGNLEACKYFLDEMVKAGC 355
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI 61
I+AFC+GG EEA +L E +VV N+++ G + K+ E +
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339
Query: 62 SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
P T+ IL+K + K AY + +M KKG P + ++LI
Sbjct: 340 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLI 385
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 3/141 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI C+ EE ++ + +K + + V+ N ++ AYCR+G + + + +
Sbjct: 629 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 688
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
ISP+ T+ LIK A +M +G +P ++LI GK+ +
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 748
Query: 121 CL---QHVKDIAKDRCAMPFM 138
CL H K++ ++ M
Sbjct: 749 CLLREMHSKNVHPNKITYTVM 769
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++++ R F++ + A D K DV L + + A+C+ G +E + + K++E
Sbjct: 245 LLTSLVRANEFQKCCE-AFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAG 303
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
++P+ TF+ +I Y A+ M ++G +P S L+ L + + +A
Sbjct: 304 VAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDA 362
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+IS C+ G +A +L F K D N++L C G ++ + +++
Sbjct: 489 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRG 548
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
D +++ LI +K A+ + +M K+G +P+ S LI L M EA+
Sbjct: 549 CVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAI 608
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 44/88 (50%)
Query: 12 EEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHIL 71
EEAK L + + + +V +++ Y + G M V ++R++ + P+ T+ ++
Sbjct: 710 EEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVM 769
Query: 72 IKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
I + ++ A R + +M +KG P+
Sbjct: 770 IGGYARDGNVTEASRLLNEMREKGIVPD 797
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ A C+ G +EA ++ D K+ ++ S+L +CR G + V+ ++ E
Sbjct: 208 LLDALCKNGSVKEASKVFEDMREKFPP-NLRYFTSLLYGWCREGKLMEAKEVLVQMKEAG 266
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL 110
+ PD F L+ + AY M DM K+G +P + LI L
Sbjct: 267 LEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQAL 316
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ +CR G EAK++ + + D+V+ ++L Y G M +M + +
Sbjct: 242 LLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRG 301
Query: 61 ISPDYNTFHILIKYF-RKEKMYMLAYRTMVDMHKKG 95
P+ N + +LI+ R EK A R V+M + G
Sbjct: 302 FEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYG 337
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVIHVMRKLDEL 59
++S + G +A L D + + +V ++ A CRT M+ + V +++
Sbjct: 277 LLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERY 336
Query: 60 AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEE 100
D T+ LI F K M Y + DM KKG P +
Sbjct: 337 GCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQ 377
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHI 70
FEE +L + + D+++ N ++ C+ G+++ + + +++ +SP +TF I
Sbjct: 393 FEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVI 452
Query: 71 LIKYFRKEKMYMLAYRTMVDMHKKG--HQPEEELCSSLIFHL 110
+I F + + A +M +G P+ SL+ +L
Sbjct: 453 MINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNL 494
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 48/75 (64%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + +GG ++EA ++ R+F++ + DVVL ++++ A C+ G + S + ++ ++ +
Sbjct: 520 LIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG 579
Query: 61 ISPDYNTFHILIKYF 75
ISP+ T++ +I F
Sbjct: 580 ISPNVVTYNSIIDAF 594
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++S + + G EEA + R+ + K DVV N++L Y + G + V V ++
Sbjct: 450 LLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREH 509
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112
+ P+ T+ LI + K +Y A + G + + L S+LI L K
Sbjct: 510 VLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCK 561
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++ RGG +E A+ L + + + DV N++L A C+ G M+ ++ ++
Sbjct: 345 LLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKR 404
Query: 61 ISPDYNTFHILIKYFRK------------EKMYM------LAYRTMVDMHKKGHQPEEEL 102
I P+ ++ +I F K E Y+ ++Y T++ ++ K + EE L
Sbjct: 405 IMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEAL 464
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 35/155 (22%)
Query: 1 MISAFCRGG----CFEEAKQL--------------ARDFEAKYDKYDVVL---------- 32
++ A C+GG FE Q+ D AK ++D L
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG 439
Query: 33 -------LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAY 85
N++L Y + G E + ++R++ + I D T++ L+ + K+ Y
Sbjct: 440 IALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVK 499
Query: 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ +M ++ P S+LI K + EA+
Sbjct: 500 KVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM 534
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYD---KYDVVLLNSMLCAYCRTGDMESVIHVMRKLD 57
+I A +GG E KQ+A+ F+ + D + NS+L R G E+ ++ ++
Sbjct: 309 VIDACGKGGM--EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMT 366
Query: 58 ELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHS 117
I D +++ L+ K LA+ + M K P S++I K
Sbjct: 367 NRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFD 426
Query: 118 EALCL 122
EAL L
Sbjct: 427 EALNL 431
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ A C+ G ++A +L D ++ ++ S+L +CR G M +V+ +++E
Sbjct: 224 LLDALCKHGSVKDAAKLFEDMRMRF-PVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAG 282
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD + L+ + AY + DM ++G +P + LI L K+ EA+
Sbjct: 283 FEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAM 342
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MISAFCRGGCFEEAKQ-LARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59
++ +CR G EAK L + EA ++ D+V ++L Y G M ++R +
Sbjct: 258 LLYGWCRVGKMMEAKYVLVQMNEAGFEP-DIVDYTNLLSGYANAGKMADAYDLLRDMRRR 316
Query: 60 AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK 93
P+ N + +LI+ K A + V+M +
Sbjct: 317 GFEPNANCYTVLIQALCKVDRMEEAMKVFVEMER 350
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++S + G +A L RD + + + ++ A C+ ME + V +++
Sbjct: 293 LLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYE 352
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEE 100
D T+ L+ F K Y + DM KKG P E
Sbjct: 353 CEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSE 392
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIK 73
D+ + N ++ C+ G+++ + + +++E +SP +TF I+I
Sbjct: 426 DIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMIN 470
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I A C+ EEA ++ + E + DVV +++ +C+ G ++ V+ + +
Sbjct: 328 LIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKG 387
Query: 61 ISPDYNTF-HILIKYFRKE 78
+ P T+ HI++ + +KE
Sbjct: 388 LMPSELTYMHIMVAHEKKE 406
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 57/115 (49%)
Query: 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD 64
FC+ G + A + E K + +VV N+M+ A+CR +M+ + ++ E + P+
Sbjct: 459 FCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPN 518
Query: 65 YNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
T+ ILI F K K A+ + M+ + E + +++I L K+ S+A
Sbjct: 519 NFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKA 573
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I AF + G EEA ++ + V+ S++ YC+ ++ + + +++E
Sbjct: 316 VIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEG 375
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
++PD F +++++F K A + M P L ++I G ++A S
Sbjct: 376 LAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMI--QGCLKAESPEA 433
Query: 121 CLQHVKDIAKDRCAMPFM--RKFFIF 144
L+ D + A FM + F +F
Sbjct: 434 ALEIFNDSFESWIAHGFMCNKIFLLF 459
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ FC+ + A ++ + ++ K D+ +++ +C+ DM++ + +L EL
Sbjct: 631 LINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELG 690
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94
+ P+ + ++ LI FR + +D++KK
Sbjct: 691 LMPNVSVYNSLISGFRN----LGKMDAAIDLYKK 720
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 1 MISAFCRGGCFEEAKQLARDF--EAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58
+I+ C+ G +AK++ ++ E +Y NS++ + + GD +S + R++ E
Sbjct: 560 IINGLCKVGQTSKAKEMLQNLIKEKRY-SMSCTSYNSIIDGFVKVGDTDSAVETYREMSE 618
Query: 59 LAISPDYNTFHILIKYFRKEKMYMLAYRTMVDM 91
SP+ TF LI F K LA +M
Sbjct: 619 NGKSPNVVTFTSLINGFCKSNRMDLALEMTHEM 651
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + CR GC + A L ++ E K K VV NS++ C+ G +++ +
Sbjct: 234 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
I P+ TF++L+ F KE A +M +G P
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C+GG E+A L K K +V+ M+ C+ G + ++RK++E
Sbjct: 479 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538
Query: 61 ISPDYNTFHILIK 73
+P+ T++ LI+
Sbjct: 539 NAPNDCTYNTLIR 551
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTM 88
DVV NS++ CR+GD + ++RK++E + D T+ +I ++ A
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 251
Query: 89 VDMHKKGHQPEEELCSSLIFHLGK 112
+M KG + +SL+ L K
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCK 275
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MIS C+ G EA L R E + + N+++ A+ R GD+ + ++ ++
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573
Query: 61 ISPDYNTFHILI 72
S D ++ ++I
Sbjct: 574 FSADASSIKMVI 585
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 38/73 (52%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++ CR G A L R E + K DV ++++ + CR G +++ I + ++++
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258
Query: 61 ISPDYNTFHILIK 73
I T++ L++
Sbjct: 259 IKSSVVTYNSLVR 271
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 39/97 (40%)
Query: 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS 62
SA R F + E +++ LN M+ +CR V+ K+ +L
Sbjct: 96 SAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYE 155
Query: 63 PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
PD TF+ LIK E A + M + G QP+
Sbjct: 156 PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPD 192
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 43/95 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ F + G +EA +L ++ + +++ N+++ YC + +++ +
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95
SPD TF LIK + K + ++ K+G
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 49/96 (51%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI+ + GG E+A+++ ++ K +V NSM+ +C G + ++++++
Sbjct: 368 MITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRG 427
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH 96
+P++ + L+ + + A+ + DM +KGH
Sbjct: 428 CNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKGH 463
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 54/113 (47%)
Query: 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN 66
R F +++++ R+ AK K D++ N+++ AYCR M + ++ I PD
Sbjct: 676 RSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVI 735
Query: 67 TFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
T++ I + + M+ A + M K G +P + +S++ K+ EA
Sbjct: 736 TYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA 788
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+ISA+ R G +EA +L K K DV ++L + R G +ES + + ++
Sbjct: 355 LISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG 414
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSE 118
P+ TF+ IK + + + +++ G P+ ++L+ G+ SE
Sbjct: 415 CKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 39/75 (52%)
Query: 33 LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH 92
N+++ AY R G E + V R++ + ++PD +T++ ++ + M+ + + + +M
Sbjct: 492 FNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME 551
Query: 93 KKGHQPEEELCSSLI 107
+P E SL+
Sbjct: 552 DGRCKPNELTYCSLL 566
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 48/99 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ RG +EA Q+ + +A YD V N++L Y ++ + + V+ ++
Sbjct: 285 LITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNG 344
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
SP T++ LI + ++ M A M +KG +P+
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPD 383
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVIHVMRKLDEL 59
+ISAF G + EA + + E K ++ N +L + + G + ++ K+
Sbjct: 214 LISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSD 273
Query: 60 AISPDYNTFHILIKYFRKEKMYMLA------------------YRTMVDMHKKGHQPEEE 101
I+PD T++ LI ++ ++ A Y ++D++ K H+P+E
Sbjct: 274 GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEA 333
Query: 102 L 102
+
Sbjct: 334 M 334
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMV 89
+V NS++ AY R G ++ + + ++ E PD T+ L+ F + A
Sbjct: 349 IVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFE 408
Query: 90 DMHKKGHQP 98
+M G +P
Sbjct: 409 EMRNAGCKP 417
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++A RGG +E+++++ + E K + + S+L AY ++ + + ++
Sbjct: 530 VLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV 589
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I P L+ K + A R ++ ++G P+ +S++ G+ + ++A
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKA- 648
Query: 121 CLQHVKDIAKDRCAMPFMRKF 141
V D K+R P M +
Sbjct: 649 --NGVLDYMKERGFTPSMATY 667
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I A+CR +A ++ + DV+ N+ + +Y E I V+R + +
Sbjct: 705 VIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHG 764
Query: 61 ISPDYNTFHILIKYFRK 77
P+ NT++ ++ + K
Sbjct: 765 CRPNQNTYNSIVDGYCK 781
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+A C+ ++A ++ D + NS+L YC +G + I ++K+
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
+ PD T+ +L+ Y K M A + M K+G +PE
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE 335
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 59/120 (49%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ +C G +EA +L + K + V ++++ YC+ ME + + ++++
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPD T++I+++ + + A V + + G Q E + ++ L K + +AL
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 36 MLCAYCRTGDMESVIHVMRKLDELAISPDYNTF----HILIKYFRKEKMYMLAYRTMVDM 91
++CAY + G ++ + V K+ + ++P+ T+ IL K R E ML + M+D
Sbjct: 377 LICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA-MLYFEQMID- 434
Query: 92 HKKGHQPEEELCSSLIFHL 110
+G P + +SLI L
Sbjct: 435 --EGLSPGNIVYNSLIHGL 451
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 52/122 (42%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C +E A++L + + + + NS++ ++C+ G + + + +
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ T++ LI + A + + M G +P S+LI K+ +AL
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566
Query: 121 CL 122
L
Sbjct: 567 VL 568
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59
++SA+ +EA + ++ K D+V N+M+ A CR G M+ ++ + +L++
Sbjct: 163 LLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKN 222
Query: 60 AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
PD +F+ L++ F + ++++ R M K P +S + L + + ++A
Sbjct: 223 GFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDA 282
Query: 120 LCL 122
L L
Sbjct: 283 LNL 285
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++ FC+G F+EA L + +VV+ N+++ C+ D+ + + V +++
Sbjct: 155 LLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKG 214
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
I D T++ LI + A R + DM K+ P ++LI
Sbjct: 215 IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 261
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ FC+ E+ +L + + D N+++ YC+ G + V ++ +
Sbjct: 330 LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 389
Query: 61 ISPDYNTFHILI 72
+SPD T++IL+
Sbjct: 390 VSPDIVTYNILL 401
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 41/102 (40%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ C G E+A + D + D++ N ++ CRT ++ + R L
Sbjct: 400 LLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKG 459
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEEL 102
+ PD + +I ++ + A + M + G P E +
Sbjct: 460 VKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERI 501
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ FC GC +AK + +K DVV N+++ +C++ +E + + ++
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 354
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
+ D T++ LI + + +A + M G P+
Sbjct: 355 LVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPD 393
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C+ G A +L + E K DVV N++L C +G ++R + + +
Sbjct: 182 LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS 241
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL 110
I+PD TF LI F K+ A +M + P +S+I L
Sbjct: 242 INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGL 291
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+IS FC+ +E +L + + D+ N+++ YC+ G + + + +
Sbjct: 322 LISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRR 381
Query: 61 ISPDYNTFHILI 72
++PD T IL+
Sbjct: 382 VTPDIITHCILL 393
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMV 89
+V +L A E+VI+ +K++ IS D +F ILI F + A +
Sbjct: 71 IVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLG 130
Query: 90 DMHKKGHQPEEELCSSLI 107
M K G++P SL+
Sbjct: 131 KMMKLGYEPSIVTFGSLL 148
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I++F R G +EA + + E K D++ NS++ + GD++ +++ E
Sbjct: 483 LIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG 542
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
++PD T+ L++ F K + +AY +M KG QP
Sbjct: 543 LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPN 581
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTM 88
D+ N ++ ++ R G+++ I++ +L+ PD +++ LI K A+
Sbjct: 476 DIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRF 535
Query: 89 VDMHKKGHQPEEELCSSLIFHLGK 112
+M +KG P+ S+L+ GK
Sbjct: 536 KEMQEKGLNPDVVTYSTLMECFGK 559
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
M+ + C G EA ++ K D ++ N++ A + + + + K+ +
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDG 472
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
SPD T++ILI F + A ++ + +P+ +SLI LGK EA
Sbjct: 473 PSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEA 531
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++S+ C+ G ++A +L + + + DVV N M+ + GD++S ++ +
Sbjct: 535 LLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAG 594
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+SPD T+ LI F K A M G +P+ +C S++
Sbjct: 595 LSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVL 641
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI FC+ G AK L + V N +L + C+ G ++ + ++
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDN 559
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD +F+I+I K A +V M + G P+ S LI K+ EA+
Sbjct: 560 NFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAI 619
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I AFC+ G +EA ++ + + D+V+ S++ +C G+++ + ++ E
Sbjct: 218 LIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERG 277
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
SP T++ LI+ F K A M ++G +P + LI L + EAL
Sbjct: 278 DSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEAL 337
Query: 121 CLQHV 125
L ++
Sbjct: 338 QLLNL 342
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 38/75 (50%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC G E+A +LA + + + +V ++ A+C+ G M+ + ++++ +
Sbjct: 183 VIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMG 242
Query: 61 ISPDYNTFHILIKYF 75
+ D + LI+ F
Sbjct: 243 LEADLVVYTSLIRGF 257
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMES---VIHVMRKLD 57
+I+ C+ G +A ++ + + + D + N +L C GD++ ++++M K D
Sbjct: 358 IINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLK-D 416
Query: 58 ELAISPDYNTFHILIKYFRKEK 79
PD +++ LI KE
Sbjct: 417 SSYTDPDVISYNALIHGLCKEN 438
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C+ G + A L + E K +++ N ++ +C G + ++R + +
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I+P+ TF +LI F KE A +M +G P+ +SLI K +A
Sbjct: 329 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKA- 387
Query: 121 CLQHVKDIAKDRCAMPFMRKFFIF 144
+ D+ + P +R F I
Sbjct: 388 --NQMVDLMVSKGCDPNIRTFNIL 409
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC G AK+L ++ ++ ++V +L C G+ E + + K+++
Sbjct: 444 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ D ++I+I A+ + KG +P + + +I L K SEA
Sbjct: 504 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 562
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 36/75 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC+ ++A Q+ +K ++ N ++ YC+ ++ + + RK+
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433
Query: 61 ISPDYNTFHILIKYF 75
+ D T++ LI+ F
Sbjct: 434 VVADTVTYNTLIQGF 448
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C ++A L K K V N M+ C+ G + + RK++E
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573
Query: 61 ISPDYNTFHILIK 73
+PD T++ILI+
Sbjct: 574 HAPDGWTYNILIR 586
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+ SA + ++ L + E K +++ L+ M+ +CR + M K+ +L
Sbjct: 94 LFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLG 153
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
P+ TF LI E A + M + GH+P+ ++L+ L +EA+
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213
Query: 121 CL 122
L
Sbjct: 214 LL 215
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/72 (18%), Positives = 34/72 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ +C+ ++ +L R + D V N+++ +C G + + +++
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468
Query: 61 ISPDYNTFHILI 72
+ P+ T+ IL+
Sbjct: 469 VPPNIVTYKILL 480
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 33/80 (41%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI C+ G EA+ L R E D N ++ A+ GD + ++ +L
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608
Query: 61 ISPDYNTFHILIKYFRKEKM 80
S D +T ++I ++
Sbjct: 609 FSVDASTIKMVIDMLSDGRL 628
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 36/75 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I +F + G EA++L ++ + D + S++ +C+ ++ ++ +
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398
Query: 61 ISPDYNTFHILIKYF 75
P+ TF+ILI +
Sbjct: 399 CDPNIRTFNILINGY 413
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%)
Query: 12 EEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHIL 71
++A L RD V+ + + A +T + V+ + ++++ I+ + T I+
Sbjct: 70 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIM 129
Query: 72 IKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I F + + LA+ M + K G++P S+LI L SEAL
Sbjct: 130 INCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEAL 178
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG---DMESVIHVMRKLD 57
++ AF + G ++ L +D + DV N ++ AY + G +ME+V+ MR +
Sbjct: 214 LLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNE 273
Query: 58 ELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR 114
PD TF++LI + K++ + +T + + +P +S+I + GK R
Sbjct: 274 ---CKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKAR 327
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTM 88
+VV N +L A+ ++G ++ V + + LD +SPD TF+ ++ + K M +
Sbjct: 207 NVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVL 266
Query: 89 VDMHKKGHQPEEELCSSLIFHLGK 112
M +P+ + LI GK
Sbjct: 267 TRMRSNECKPDIITFNVLIDSYGK 290
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHI 70
FEE + R +A LN+ML YCR G + + PD +T+
Sbjct: 371 FEEVGESDRVLKAS-------TLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKF 423
Query: 71 LIKYFRKEKMYMLAYRTMVDMHKKGHQPEE 100
L K + K M M M K G P +
Sbjct: 424 LYKAYTKADMKEQVQILMKKMEKDGIVPNK 453
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FC+ F++A+ + + DVV S + AYC+ GD V ++ ++ E
Sbjct: 279 LIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENG 338
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112
+P+ T+ I++ K K A M + G P+ + SSLI L K
Sbjct: 339 CNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSK 390
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 5 FCRGGCFEEAKQLARDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP 63
+ G + +A + E Y K D + +NS++ A + +E V KL + I P
Sbjct: 213 LAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFD-TIKP 271
Query: 64 DYNTFHILIKYFRKEKMYMLAYRTMVDMHK 93
D TF+ILI F K + + A R M+D+ K
Sbjct: 272 DARTFNILIHGFCKARKFDDA-RAMMDLMK 300
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++S + G EA L R E + D+ N +L + RTG I + +
Sbjct: 520 LMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSG 579
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKM 113
I PD T++ L+ F M+ A R M +M KG + + SS++ +G +
Sbjct: 580 IKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNV 632
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 47/107 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI F + G EA L + + + DV N+++ + G + ++RK++E
Sbjct: 485 MIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENG 544
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
D N+ +I++ F + + A + G +P+ ++L+
Sbjct: 545 CRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLL 591
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDM 91
+ ++L Y + G +E + + ++ SP T+ LIK K AY DM
Sbjct: 270 IYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDM 329
Query: 92 HKKGHQPEEELCSSLIFHLGKM 113
+ G P+ ++L+ LGK+
Sbjct: 330 LRDGLTPDVVFLNNLMNILGKV 351
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + G +EA +D DVV LN+++ + G +E + +V ++
Sbjct: 309 LIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWR 368
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVD-MHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
+P +++ +IK + K ++ + D M P E S LI K +A
Sbjct: 369 CTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKA 428
Query: 120 LCL 122
L L
Sbjct: 429 LLL 431
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 36 MLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95
++ YC+T +E + ++ ++DE P + LI K K Y A ++ +
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474
Query: 96 HQPEEELCSSLIFHLGKMRAHSEALCL 122
+ + +I H GK SEA+ L
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDL 501
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKY--DVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58
+I F R +A L + E + DV NS+L +CR M+ V+RK+ E
Sbjct: 626 LIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIE 685
Query: 59 LAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEEL 102
++PD +T+ +I F + A+R +M ++G P+++
Sbjct: 686 RGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 46/112 (41%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
M++A C+ G E+ + K D+V N+++ AY G ME +M +
Sbjct: 241 MVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG 300
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112
SP T++ +I K Y A +M + G P+ SL+ K
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 51/107 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C+ G + A +L + + K + DVV N++L + + GD+++ + +
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
I P ++ IL+ + A+R +M K +P +C+S+I
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMI 592
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + R G E A + ++ +V LN M+ A C+ G ME V + ++ E
Sbjct: 206 LIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKG 265
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
+ PD T++ LI + + + A+ M M KG P
Sbjct: 266 VYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSP 303
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 47/94 (50%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++A C G EA ++ + +K K V++ NSM+ YCR+G+ + K+
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94
PD +++ LI F +E+ A+ + M ++
Sbjct: 616 FVPDCISYNTLIYGFVREENMSKAFGLVKKMEEE 649
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 46/90 (51%)
Query: 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY 65
C+ G E +++ D ++ D+V +SM+ + R+G+++ + + E + PD
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410
Query: 66 NTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95
+ ILI+ + ++ M +A +M ++G
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQG 440
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+ISA+ G EEA +L K V N+++ C+ G E V ++
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+SPD T+ L+ K+ + + DM + P+ SS++
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMM 382
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I +CR G A L + + DVV N++L C+ + + ++ E A
Sbjct: 416 LIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERA 475
Query: 61 ISPDYNTFHILI 72
+ PD T ILI
Sbjct: 476 LFPDSYTLTILI 487
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDM---ESVIHVMRKLD 57
+I+ C+ G +E AK++ + D S+L C+ GD+ E V MR D
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370
Query: 58 ELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHS 117
+ PD F ++ F + A + + G P+ + + LI G R
Sbjct: 371 ---VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILI--QGYCRKGM 425
Query: 118 EALCLQHVKDIAKDRCAM 135
++ + ++ + CAM
Sbjct: 426 ISVAMNLRNEMLQQGCAM 443
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ C+ EA +L + + D L ++ +C+ G++++ + + +K+ E
Sbjct: 451 ILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKR 510
Query: 61 ISPDYNTFHILIKYFRK 77
I D T++ L+ F K
Sbjct: 511 IRLDVVTYNTLLDGFGK 527
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI +C+ G ++A + RD E + + D + +M+ A D S + + +++DE
Sbjct: 263 MIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKG 322
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I + F ++I KE Y +M +KG +P + + LI K + +A+
Sbjct: 323 IQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAI 382
Query: 121 CLQH 124
L H
Sbjct: 383 RLLH 386
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 43/100 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I +F + G EE + R + + + N ++ ++S V ++
Sbjct: 193 LIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGR 252
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEE 100
I PD T++ +IK + K A + DM +GH+ ++
Sbjct: 253 IKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADK 292
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVI---HVMRKLD 57
+I + + G E+A +L + K DVV + ++ C+ G +E + H R D
Sbjct: 368 LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCR-FD 426
Query: 58 ELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHS 117
LAI+ + + LI K A R +M +KG + ++LI K R
Sbjct: 427 GLAINSMF--YSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVD 484
Query: 118 EALCL 122
EA+ L
Sbjct: 485 EAIAL 489
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 50/98 (51%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
M+S F R +++A+ + D+V NS++ Y R G+ +++ L++
Sbjct: 637 MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
+ PD +++ +IK F + + A R + +M ++G +P
Sbjct: 697 LKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRP 734
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP--- 63
RG C++ A+++ + E K D+V N+++ +CR G M+ + ++ ++ E I P
Sbjct: 679 RGECWK-AEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIF 737
Query: 64 DYNTF 68
YNTF
Sbjct: 738 TYNTF 742
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++SA R G EAK+ + ++ + V N++L + + G + V+++++E +
Sbjct: 287 VLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENS 346
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
D T++ L+ + + A + M KKG P +++I GK EAL
Sbjct: 347 CPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEAL 406
Query: 121 CL 122
L
Sbjct: 407 KL 408
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 50/118 (42%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ F + G + EA + ++ E D V N ++ AY R G + V+ + +
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKG 381
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSE 118
+ P+ T+ +I + K A + M + G P ++++ LGK +E
Sbjct: 382 VMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNE 439
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 38/141 (26%)
Query: 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK----------- 77
DV ++L AY RTG E I + ++ E+ SP T+++++ F K
Sbjct: 209 DVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGV 268
Query: 78 -------------------------EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112
E + A ++ G++P ++L+ GK
Sbjct: 269 LDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGK 328
Query: 113 MRAHSEALCLQHVKDIAKDRC 133
++EAL + +K++ ++ C
Sbjct: 329 AGVYTEALSV--LKEMEENSC 347
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86
K D+V+ NSML + R + ++ + E +SPD T++ L+ + + A
Sbjct: 628 KPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEE 687
Query: 87 TMVDMHKKGHQPE 99
+ + K +P+
Sbjct: 688 ILKTLEKSQLKPD 700
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I A R G +A+ + R+ + + K DVV N+++ Y +T + V ++ ++
Sbjct: 449 LIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAG 508
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
ISPD T++ILI A + ++ ++G P + +I K EA
Sbjct: 509 ISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAF 568
Query: 121 CL 122
L
Sbjct: 569 IL 570
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I F + G F+EA L K DVV +++L YC+ ME I + KL +
Sbjct: 554 VIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAG 613
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL-GKMRAHSEA 119
+ PD ++ LI + A + M ++G P E +L+ L GK +SE
Sbjct: 614 LKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGLEGKRFVNSET 673
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI 61
I FC+ G EEA +L F + + + + +S L C TGDM + +++ EL +
Sbjct: 348 IDGFCKVGKPEEAIKLIHSFRLRPN---IFVYSSFLSNICSTGDMLRASTIFQEIFELGL 404
Query: 62 SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
PD + +I + A++ + K G+ P + LI + + S+A
Sbjct: 405 LPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDA 462
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ +C+ G E+A + E++ + N ++ YC++ ++ + V+ K+ E
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERK 457
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ PD T++ LI + + AYR + M+ +G P++ +S+I L K + EA
Sbjct: 458 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEA 516
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + G F+ A + + K D + + YCR G + +M K+ E
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL-----GKMRA 115
+SPD T+ LIK + A+ + M G +P + SLI HL GK +
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKG 727
Query: 116 HSEALC 121
LC
Sbjct: 728 SEPELC 733
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++++ R G +E KQ+ + ++ N M+ YC+ G++E + K+ E
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG 248
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD+ T+ LI + + K A++ +M KG + E + LI L R EA+
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAM 308
Query: 121 CLQHVKDIAKDRCAMPFMRKFFIF 144
L VK KD P +R + +
Sbjct: 309 DL-FVK--MKDDECFPTVRTYTVL 329
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + C FE+A++L K +V+ N+++ YC+ G +E + V+ ++
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423
Query: 61 ISPDYNTFHILIKYFRKEKMY 81
+SP+ T++ LIK + K ++
Sbjct: 424 LSPNTRTYNELIKGYCKSNVH 444
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I +C+ + L + E K DVV NS++ CR+G+ +S ++ +++
Sbjct: 434 LIKGYCKSNVHKAMGVLNKMLERKVLP-DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ PD T+ +I K K A + +KG P + ++LI
Sbjct: 493 LVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALI 539
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 47/107 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I +C+ G +EA + +K + + N+++ C G ++ + K+ ++
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ P +T ILI K+ + AY M G +P+ ++ I
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFI 644
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI + C+ EEA L E K +VV+ +++ YC+ G ++ ++ K+
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112
P+ TF+ LI + A M K G QP + LI L K
Sbjct: 563 CLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLK 614
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 37 LCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK-KG 95
LCA + ++V+ ++ K+ E +++P+ ++ LI + +A + M + +G
Sbjct: 732 LCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEG 791
Query: 96 HQPEEELCSSLIFHLGKMRAHSEA-------LCLQHVKDI 128
P E + ++L+ K++ H+EA +C+ H+ +
Sbjct: 792 ISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQL 831
>sp|Q3EDA9|PPR46_ARATH Putative pentatricopeptide repeat-containing protein At1g16830
OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2
Length = 608
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%)
Query: 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY 65
CR GC EA Q+ V + + ++ + R+G+ + + + K+ ++ SP+
Sbjct: 223 CRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNL 282
Query: 66 NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
T+ LIK F M A+ + + +G P+ LC+ +I ++ EA
Sbjct: 283 VTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEA 336
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I F G +EA + +++ D+VL N M+ Y R G E V L++
Sbjct: 288 LIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRK 347
Query: 61 ISPDYNTF 68
+ PD TF
Sbjct: 348 LVPDQYTF 355
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ C+GG EA++ + A D V+ N++L A C++G++ + + ++ + +
Sbjct: 584 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 643
Query: 61 ISPDYNTFHILIKYF-RKEK 79
I PD T+ LI RK K
Sbjct: 644 ILPDSYTYTSLISGLCRKGK 663
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ C G FE++ L + E +V N++L YC+ G ++ I ++ +
Sbjct: 199 LINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKG 258
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ D T+++LI + Y + DM K+ P E ++LI
Sbjct: 259 VDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLI 305
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVIHVMRKL 56
++ C+ F+ LAR F + + V + M+ C+ G ++ + ++ ++
Sbjct: 374 LLDGLCKNAEFD----LARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM 429
Query: 57 DELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAH 116
+ I PD T+ LI F K + A + +++ G P + S+LI++ +M
Sbjct: 430 SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL 489
Query: 117 SEAL 120
EA+
Sbjct: 490 KEAI 493
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK---MYMLAY 85
D+V N+M+ Y R G +E ++ ++ P+ T++IL+ + K K L Y
Sbjct: 718 DIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLY 777
Query: 86 RTMVDMHKKGHQPEEELCSSLIFHL 110
R+++ G P++ C SL+ +
Sbjct: 778 RSII---LNGILPDKLTCHSLVLGI 799
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%)
Query: 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD 64
+C+ G F+ A +L ++K DV N ++ CR+ + ++R + + I P+
Sbjct: 238 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 297
Query: 65 YNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
T++ LI F E ++A + + +M G P ++LI
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALI 340
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%)
Query: 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY 65
CR GC +EA ++ + D N ++ + C+ G + MR + I P+
Sbjct: 484 CRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNT 543
Query: 66 NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
+F LI + + A+ +M K GH P
Sbjct: 544 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHP 576
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + R G +++ ++ R V N++L + ++G+ SV ++++ +
Sbjct: 129 LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRK 188
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL----GKMRAH 116
I PD TF+ILI E + + M M K G+ P + + + H G+ +A
Sbjct: 189 ICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAP-TIVTYNTVLHWYCKKGRFKAA 247
Query: 117 SEALCLQHVKDIAKDRCA 134
E L K + D C
Sbjct: 248 IELLDHMKSKGVDADVCT 265
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 11/136 (8%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I CR + L RD + + V N+++ + G + ++ ++
Sbjct: 269 LIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG 328
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEE--------ELCSSLIFHLGK 112
+SP++ TF+ LI E + A + M KG P E LC + F L +
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLAR 388
Query: 113 ---MRAHSEALCLQHV 125
MR +C+ +
Sbjct: 389 GFYMRMKRNGVCVGRI 404
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/110 (18%), Positives = 44/110 (40%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ C E ++ + F + + D N ++ C G++ +++ + L
Sbjct: 795 LVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLG 854
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL 110
IS D +T ++ + + + + +M K+G PE LI L
Sbjct: 855 ISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGL 904
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 60/122 (49%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ +C+ G EA+Q+ K D N+++ YCR G ++ + + ++ +
Sbjct: 372 LINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKE 431
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P T++IL+K + + + M K+G +E CS+L+ L K+ +EA+
Sbjct: 432 VVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAM 491
Query: 121 CL 122
L
Sbjct: 492 KL 493
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59
+++A+CR G ++A A++ E+ + +VV NS++ Y GD+E + V+R + E
Sbjct: 231 VVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSER 290
Query: 60 AISPDYNTFHILIKYFRKEKM 80
+S + T+ LIK + K+ +
Sbjct: 291 GVSRNVVTYTSLIKGYCKKGL 311
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ + G E ++ R + +VV S++ YC+ G ME HV L E
Sbjct: 267 LINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKK 326
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ D + + +L+ + + A R +M + G + +C+SLI
Sbjct: 327 LVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLI 373
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 47/107 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I +C+ G EEA+ + + K D + ++ YCRTG + + V + E+
Sbjct: 302 LIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIG 361
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+ + + LI + K + A + M+ +P+ ++L+
Sbjct: 362 VRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLV 408
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTM 88
++V N+++ C+ G+++ ++ KL + I+P+ T++ LI K A R
Sbjct: 789 NIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLK 848
Query: 89 VDMHKKG 95
M +KG
Sbjct: 849 EKMIEKG 855
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 2 ISAFCRGGCFEEAKQLARDFEAK----YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLD 57
I+ C+ G E+A++L D + D+Y +L CA GD+ + ++
Sbjct: 726 IAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHG-CAI--AGDINKAFTLRDEMA 782
Query: 58 ELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHS 117
I P+ T++ LIK K A R + + +KG P ++LI L K +
Sbjct: 783 LKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVA 842
Query: 118 EALCLQ 123
EA+ L+
Sbjct: 843 EAMRLK 848
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI +CR G A+ E + K D + N ++ +C G+ME+ + K+
Sbjct: 395 MIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKG 454
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SP T++ILI + ++ + + + +M G P +LI L K S+ L
Sbjct: 455 VSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCK---GSKLL 511
Query: 121 CLQHVKDIAKDRCAMPFMR 139
Q VK +DR P +R
Sbjct: 512 EAQIVKRDMEDRGVSPKVR 530
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++A C+ G E+A+++ AK + V+ N+M+ YCR GD+ + +++
Sbjct: 360 LLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQG 419
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD+ ++ LI+ F + A + + M KG P E + LI G R +
Sbjct: 420 MKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYG--RKYEFDK 477
Query: 121 CLQHVKDIAKDRCAMP 136
C +K++ +D MP
Sbjct: 478 CFDILKEM-EDNGTMP 492
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C+G +A+QL + A+ ++ N+++ YC+ G+ E V ++
Sbjct: 220 LIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADH 279
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
I P TF+ L+K K M A + +M G P+
Sbjct: 280 IEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPD 318
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I G EA+ L + K K DV NS++ Y G+++ I + ++
Sbjct: 570 LIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSG 629
Query: 61 ISPDYNTFHILIKYFRKEKM 80
I P T+H+LI KE +
Sbjct: 630 IKPTLKTYHLLISLCTKEGI 649
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ C+G EA+ + RD E + V + N ++ C G +E +++ +
Sbjct: 500 LINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKG 559
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLG 111
I + T++ LI A ++++ +KG +P+ +SLI G
Sbjct: 560 IELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYG 610
>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330
OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1
Length = 471
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+IS+ + G E + + K K D V N ++ +C D ES V+ ++ E
Sbjct: 264 LISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKG 323
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE--------EELCSSLIFH 109
+ PD ++++++ F + K + A DM ++G P+ + LC L F
Sbjct: 324 LKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFE 380
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 1 MISAFCRGGCFEEAKQLARD-FEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59
+I A C+ G A +L + +E K K D + ++++ + + G V ++ ++ E
Sbjct: 229 LIKALCQIGELSFAFKLKDEAYEGKI-KVDAAIYSTLISSLIKAGRSNEVSMILEEMSEK 287
Query: 60 AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
PD T+++LI F E A R + +M +KG +P+
Sbjct: 288 GCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPD 327
>sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650,
mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2
SV=1
Length = 576
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 44/75 (58%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+IS + +GG +EA+++ + + K+ K V ++++ YC+ + + + ++ ++D
Sbjct: 448 IISGYAKGGMMDEAQEILAEAKKKHKKLSPVTYHALIRGYCKIEEYDEALKLLNEMDRFG 507
Query: 61 ISPDYNTFHILIKYF 75
+ P+ + ++ LI+ F
Sbjct: 508 VQPNADEYNKLIQSF 522
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 58/127 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + CR ++AK L D +K + N ++ A +TGD++ V++ ++
Sbjct: 378 VIHSLCRMRNVKDAKALLLDMISKGPAPGNAVFNLVVHACSKTGDLDEAKEVLKLMESRG 437
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T+ ++I + K M A + + KK + +LI K+ + EAL
Sbjct: 438 LKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKHKKLSPVTYHALIRGYCKIEEYDEAL 497
Query: 121 CLQHVKD 127
L + D
Sbjct: 498 KLLNEMD 504
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMR--KLDE 58
++ A + G +EAK++ + E++ K DV ++ Y + G M+ ++ K
Sbjct: 413 VVHACSKTGDLDEAKEVLKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKH 472
Query: 59 LAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
+SP T+H LI+ + K + Y A + + +M + G QP + + LI
Sbjct: 473 KKLSP--VTYHALIRGYCKIEEYDEALKLLNEMDRFGVQPNADEYNKLI 519
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ A C+ E A ++ + + ++V ++L Y GDMES V+ ++ +
Sbjct: 197 LVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRG 256
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ +L+ + K + A M DM K +P E +I L K + EA
Sbjct: 257 WYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEA- 315
Query: 121 CLQHVKDIAKDRCAMP 136
+++ D +R MP
Sbjct: 316 --RNMFDEMLERSFMP 329
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ + G E AK++ + + D ++ YC+ G VM +++
Sbjct: 232 ILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNE 291
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I P+ T+ ++I+ KEK A +M ++ P+ LC +I +AL
Sbjct: 292 IEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVI----------DAL 341
Query: 121 CLQHVKDIA 129
C H D A
Sbjct: 342 CEDHKVDEA 350
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 34 NSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK 93
N ++ A C+ D+ES V+ ++ + + P+ T+ ++ + A R + +M
Sbjct: 195 NLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLD 254
Query: 94 KGHQPEEELCSSLIFHLGKMRAHSEA 119
+G P+ + L+ K+ SEA
Sbjct: 255 RGWYPDATTYTVLMDGYCKLGRFSEA 280
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ CR G E AK+L +K D+V + ++ YCR G+ +++++ ++
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTSK-GLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMG 500
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94
+ P + T++I++K + KE A M K+
Sbjct: 501 LKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKE 534
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCR---TGDMESVIHVMRKLD 57
+I+A C+ G +A+ + D + +VV N+++ YC+ G M V++++
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288
Query: 58 ELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHS 117
E +SP+ TF+ILI F K+ + + +M + +P +SLI L S
Sbjct: 289 ENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKIS 348
Query: 118 EALCLQ 123
EA+ ++
Sbjct: 349 EAISMR 354
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I A+C+ G ++ L + E + DV N ++ CR G++E+ + +L
Sbjct: 407 LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG 466
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
+ PD TFHIL++ + ++ A + +M K G +P
Sbjct: 467 L-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKP 503
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+ FC+ +EA + + + + N ++ AYC+ G ++ + +++
Sbjct: 372 LINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG 431
Query: 61 ISPDYNTFHILI 72
I PD T++ LI
Sbjct: 432 IVPDVGTYNCLI 443
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI C+ G +EA +L + E K + +VV +M+ + G +E+ + ++ ++
Sbjct: 750 MIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKG 809
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
++P+Y T+ +LI + K +A+ + +M K+ H P
Sbjct: 810 VAPNYVTYRVLIDHCCKNGALDVAHNLLEEM-KQTHWP 846
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 52/119 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ FC+ EEA++L + + + ++ ++++ C+ G ++ V ++ E
Sbjct: 645 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG 704
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119
T+ LI + K K LA + + M + P + + +I L K+ EA
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEA 763
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 37/98 (37%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+IS C FEEA A +VV +++LC + V+ +
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
P F+ L+ + + AY+ + M K GH P
Sbjct: 368 CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMP 405
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDM 91
+ NS++ AYC +GD +++K+ + P Y ++ILI +K + ++D+
Sbjct: 374 IFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNC--DLLDL 431
Query: 92 HKKGHQPEEELCSSLIFHLGKMRAHSEALC 121
+K + E L + ++ + + + + LC
Sbjct: 432 AEKAYS--EMLAAGVVLNKINVSSFTRCLC 459
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I FCR G +A ++ E DV+ N M+ YC+ G++ + + V LD ++
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSV---LDRMS 199
Query: 61 ISPDYNTFHILIK 73
+SPD T++ +++
Sbjct: 200 VSPDVVTYNTILR 212
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 55/124 (44%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ FC+ + A + ++ D+V N+ML A C+ G +E + ++ +L
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
SP T++ +I K A + + +M K +P+ SSL+ L + EA+
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504
Query: 121 CLQH 124
H
Sbjct: 505 KFFH 508
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I A CR A +L + + DVV N ++ C+ G ++ I + +
Sbjct: 245 LIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG 304
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
P+ T +I+++ +M A + + DM +KG P
Sbjct: 305 CQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP 342
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MIS +C+ G A + D VV N++L + C +G ++ + V+ ++ +
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVSPD---VVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
PD T+ ILI+ ++ A + + +M +G P+
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD 273
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+++ C+ G +EA + D + + +V+ N +L + C TG ++ +
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
SP TF+ILI + ++ + A + M + G QP
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 46/99 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
++ + C G + +A++L D K VV N ++ CR G + I ++ K+ +
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
P+ +++ L+ F KEK A + M +G P+
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 6/140 (4%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I + G +A +L + AK K D + +S++ R G ++ I + + +
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I P+ TF+ ++ K + A +V M +G +P E + LI L EAL
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574
Query: 121 CLQHVKDIAKDRCAMPFMRK 140
++ + C M+K
Sbjct: 575 ------ELLNELCNKGLMKK 588
Score = 35.8 bits (81), Expect = 0.095, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59
++ + C G ++A ++ D + D Y DV+ ++ A CR V H M+ LDE+
Sbjct: 210 ILRSLCDSGKLKQAMEVL-DRMLQRDCYPDVITYTILIEATCRD---SGVGHAMKLLDEM 265
Query: 60 ---AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98
+PD T+++L+ KE A + + DM G QP
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQP 307
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 52/120 (43%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
M++A C+ G E+A ++ +K ++ N+++ + G I ++ ++
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T+ L+ +E A + + + G +P +S++ L K R A+
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 51/107 (47%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I+AFCR G + A + + D+V N++L C+ G + + + KL E+
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107
SP+ ++++ + + A +++M G P+E +S+I
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMI 480
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MIS CR G +EA +L D + VV N +L +C+ +E I+V+ +
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG 538
Query: 61 ISPDYNTFHILIK 73
P+ T+ +LI+
Sbjct: 539 CRPNETTYTVLIE 551
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 1 MISAFCRGGCFEEAKQL-ARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59
++ A G +EE ++L + F K D +VV + ++ CR G +E +++++ + E
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSEKCDP-NVVTYSILITTLCRDGKIEEAMNLLKLMKEK 362
Query: 60 AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
++PD ++ LI F +E +A + M G P+
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPD 402
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
+I C+ G + A ++ R+ E K + DV+ N +L A G E +M K+
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
P+ T+ ILI ++ A + M +KG P+
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 367
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 34 NSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK 93
N+M A +GD +H++ ++ I PD T++ +I +E M A+ +VDM
Sbjct: 442 NTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRS 501
Query: 94 KGHQPEEELCSSLIFHLGKMRAH 116
P + + I LG +AH
Sbjct: 502 CEFHP--SVVTYNIVLLGFCKAH 522
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 40/94 (42%)
Query: 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTM 88
D + NSM+ CR G ++ ++ + P T++I++ F K A +
Sbjct: 472 DEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVL 531
Query: 89 VDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCL 122
M G +P E + LI +G +EA+ L
Sbjct: 532 ESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 46/99 (46%)
Query: 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60
MI + C G + A ++ + + V+ ++ A G ++ + +M ++
Sbjct: 199 MIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG 258
Query: 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
+ PD T++ +I+ KE M A+ + ++ KG +P+
Sbjct: 259 LKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPD 297
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 34/75 (45%)
Query: 24 KYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83
K+ + DV N+++ +C+ ++ V+ ++ SPD T++I+I L
Sbjct: 152 KFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDL 211
Query: 84 AYRTMVDMHKKGHQP 98
A + + + QP
Sbjct: 212 ALKVLNQLLSDNCQP 226
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY 65
CR G + E+ L K DV+L ++ + ++ + VM L++ PD
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158
Query: 66 NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
++ LI F K A R + M K P+
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPD 192
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY 65
C+ G +A +L ++ +++ K DVV N+++ A + +E I V R++ E P+
Sbjct: 235 CKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNV 294
Query: 66 NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99
T + +IK ++ AYR + +M K+G QP+
Sbjct: 295 ATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPD 328
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,729,446
Number of Sequences: 539616
Number of extensions: 1901269
Number of successful extensions: 7298
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 5841
Number of HSP's gapped (non-prelim): 1394
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)