Query 045403
Match_columns 144
No_of_seqs 130 out of 1367
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:53:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.6E-28 7.9E-33 190.8 17.6 126 2-127 586-711 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.6E-28 1E-32 190.2 17.6 129 1-129 620-748 (1060)
3 PLN03081 pentatricopeptide (PP 99.9 3.6E-27 7.9E-32 180.8 13.9 137 1-142 265-401 (697)
4 PLN03081 pentatricopeptide (PP 99.9 9.7E-27 2.1E-31 178.4 15.2 139 1-139 296-465 (697)
5 PLN03077 Protein ECB2; Provisi 99.9 3.5E-26 7.5E-31 178.7 14.6 132 1-137 530-662 (857)
6 PLN03077 Protein ECB2; Provisi 99.9 1.2E-25 2.6E-30 175.6 14.4 137 1-142 228-364 (857)
7 PF13041 PPR_2: PPR repeat fam 99.8 1.9E-18 4.1E-23 89.9 6.4 50 28-77 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 6.9E-17 1.5E-21 84.0 6.9 50 63-112 1-50 (50)
9 PF12854 PPR_1: PPR repeat 99.3 3E-12 6.4E-17 60.8 4.3 32 25-56 2-33 (34)
10 PF12854 PPR_1: PPR repeat 99.3 3.7E-12 8.1E-17 60.4 4.0 32 60-91 2-33 (34)
11 PRK11788 tetratricopeptide rep 99.3 1.5E-10 3.3E-15 83.6 13.3 122 4-128 189-310 (389)
12 PRK11788 tetratricopeptide rep 99.3 4.2E-10 9.1E-15 81.3 15.0 126 2-128 148-277 (389)
13 KOG4422 Uncharacterized conser 99.3 1.2E-10 2.5E-15 83.6 11.2 125 1-129 213-342 (625)
14 TIGR02917 PEP_TPR_lipo putativ 99.1 1.2E-08 2.5E-13 79.9 16.8 124 3-129 575-698 (899)
15 KOG4422 Uncharacterized conser 99.1 3.7E-09 8E-14 76.1 12.0 101 27-131 204-308 (625)
16 TIGR02917 PEP_TPR_lipo putativ 99.1 1.8E-08 4E-13 78.8 16.1 121 5-129 679-799 (899)
17 TIGR00756 PPR pentatricopeptid 99.0 6.7E-10 1.4E-14 52.7 4.4 33 32-64 2-34 (35)
18 PF13812 PPR_3: Pentatricopept 99.0 8.7E-10 1.9E-14 52.1 4.2 33 31-63 2-34 (34)
19 TIGR02521 type_IV_pilW type IV 98.9 3.8E-07 8.3E-12 60.6 16.3 121 6-128 76-197 (234)
20 PF08579 RPM2: Mitochondrial r 98.9 3.4E-08 7.4E-13 58.8 9.5 82 31-112 26-116 (120)
21 TIGR02521 type_IV_pilW type IV 98.9 5.2E-07 1.1E-11 59.9 16.5 126 3-130 39-165 (234)
22 TIGR00756 PPR pentatricopeptid 98.9 6E-09 1.3E-13 49.3 4.0 34 66-99 1-34 (35)
23 PF08579 RPM2: Mitochondrial r 98.9 1.7E-07 3.7E-12 55.8 10.9 76 2-77 32-116 (120)
24 PF13429 TPR_15: Tetratricopep 98.8 2.6E-08 5.7E-13 69.3 8.4 125 2-129 117-243 (280)
25 PRK12370 invasion protein regu 98.8 9.1E-07 2E-11 67.2 17.1 121 4-128 347-469 (553)
26 PF01535 PPR: PPR repeat; Int 98.8 7.2E-09 1.6E-13 47.8 3.2 30 32-61 2-31 (31)
27 PF13812 PPR_3: Pentatricopept 98.8 1.7E-08 3.7E-13 47.6 4.4 33 66-98 2-34 (34)
28 PF06239 ECSIT: Evolutionarily 98.8 6E-07 1.3E-11 59.5 12.4 89 27-115 44-153 (228)
29 PF13429 TPR_15: Tetratricopep 98.8 2.5E-07 5.3E-12 64.4 11.2 119 6-128 88-208 (280)
30 TIGR00990 3a0801s09 mitochondr 98.7 2.4E-06 5.3E-11 65.7 17.2 117 7-126 343-459 (615)
31 TIGR00990 3a0801s09 mitochondr 98.7 3.5E-06 7.7E-11 64.8 16.4 123 4-129 374-496 (615)
32 PRK10370 formate-dependent nit 98.7 7.7E-06 1.7E-10 54.3 15.5 123 7-132 51-176 (198)
33 PRK15174 Vi polysaccharide exp 98.6 5.4E-06 1.2E-10 64.3 16.5 122 4-128 221-346 (656)
34 PF10037 MRP-S27: Mitochondria 98.6 9.4E-07 2E-11 64.6 11.5 105 25-129 61-167 (429)
35 PRK12370 invasion protein regu 98.6 9E-06 2E-10 61.9 16.7 120 7-130 316-436 (553)
36 PRK15174 Vi polysaccharide exp 98.6 5.8E-06 1.2E-10 64.1 15.8 81 8-91 89-170 (656)
37 TIGR02552 LcrH_SycD type III s 98.6 1.7E-05 3.6E-10 49.1 14.8 110 17-129 5-114 (135)
38 PF01535 PPR: PPR repeat; Int 98.6 7.8E-08 1.7E-12 44.2 3.1 29 67-95 2-30 (31)
39 PF10037 MRP-S27: Mitochondria 98.6 1.2E-06 2.5E-11 64.1 10.5 112 2-113 73-186 (429)
40 PRK11189 lipoprotein NlpI; Pro 98.6 1.6E-05 3.6E-10 55.9 16.1 119 4-127 73-192 (296)
41 PF06239 ECSIT: Evolutionarily 98.6 1.4E-06 3.1E-11 57.8 9.7 76 6-81 63-154 (228)
42 PRK15359 type III secretion sy 98.5 2.5E-05 5.5E-10 49.2 14.1 108 16-129 14-121 (144)
43 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.2E-05 2.6E-10 58.5 13.9 121 1-128 175-296 (395)
44 PRK09782 bacteriophage N4 rece 98.5 3.5E-05 7.7E-10 62.1 17.5 23 103-125 680-702 (987)
45 COG2956 Predicted N-acetylgluc 98.5 1.3E-05 2.9E-10 56.2 12.8 119 8-131 48-172 (389)
46 PRK15359 type III secretion sy 98.5 1.5E-05 3.3E-10 50.2 12.3 95 4-102 33-127 (144)
47 KOG4318 Bicoid mRNA stability 98.4 3.4E-07 7.3E-12 71.0 5.3 91 16-118 11-101 (1088)
48 COG3063 PilF Tfp pilus assembl 98.4 4.8E-05 1E-09 51.1 14.6 125 4-131 44-170 (250)
49 PRK09782 bacteriophage N4 rece 98.4 3.1E-05 6.8E-10 62.4 16.2 122 4-129 551-672 (987)
50 PRK11447 cellulose synthase su 98.4 2.2E-05 4.8E-10 64.5 15.2 120 4-126 612-737 (1157)
51 PRK11447 cellulose synthase su 98.4 3.3E-05 7.1E-10 63.5 15.6 120 3-129 581-700 (1157)
52 PRK14574 hmsH outer membrane p 98.4 5E-05 1.1E-09 60.2 15.7 123 5-130 44-166 (822)
53 PRK14574 hmsH outer membrane p 98.4 7.2E-05 1.6E-09 59.3 16.5 128 2-129 299-445 (822)
54 PF04733 Coatomer_E: Coatomer 98.4 2.4E-05 5.2E-10 54.9 12.3 132 2-138 138-274 (290)
55 PF09976 TPR_21: Tetratricopep 98.3 0.0001 2.3E-09 46.4 14.0 117 7-125 23-143 (145)
56 PRK10747 putative protoheme IX 98.3 8.2E-05 1.8E-09 54.5 15.3 121 8-132 97-219 (398)
57 TIGR00540 hemY_coli hemY prote 98.3 0.00012 2.7E-09 53.7 16.2 127 7-135 96-222 (409)
58 cd00189 TPR Tetratricopeptide 98.3 4.8E-05 1E-09 42.8 11.5 93 33-127 3-95 (100)
59 PRK10049 pgaA outer membrane p 98.3 9.6E-05 2.1E-09 58.5 16.3 125 4-131 319-458 (765)
60 PRK11189 lipoprotein NlpI; Pro 98.3 0.0002 4.4E-09 50.4 16.4 122 8-132 39-164 (296)
61 TIGR02552 LcrH_SycD type III s 98.3 4.1E-05 8.9E-10 47.3 11.6 98 3-104 25-122 (135)
62 PRK15179 Vi polysaccharide bio 98.3 6.8E-05 1.5E-09 58.5 15.0 123 4-129 95-217 (694)
63 KOG4626 O-linked N-acetylgluco 98.3 3.3E-05 7.2E-10 58.6 12.7 121 3-127 294-415 (966)
64 PRK10049 pgaA outer membrane p 98.3 0.00014 3E-09 57.6 16.9 121 4-128 24-144 (765)
65 KOG1155 Anaphase-promoting com 98.3 8.1E-05 1.8E-09 54.6 14.2 120 5-128 340-460 (559)
66 PF04733 Coatomer_E: Coatomer 98.3 8.5E-06 1.8E-10 57.2 8.8 119 4-132 111-233 (290)
67 COG3063 PilF Tfp pilus assembl 98.3 0.00015 3.2E-09 48.7 13.5 127 3-131 77-204 (250)
68 KOG3081 Vesicle coat complex C 98.2 0.0001 2.2E-09 50.5 12.8 123 4-136 117-243 (299)
69 cd00189 TPR Tetratricopeptide 98.2 4.3E-05 9.2E-10 43.0 9.8 90 3-94 8-97 (100)
70 PF12895 Apc3: Anaphase-promot 98.2 3.9E-06 8.4E-11 47.9 5.2 81 8-90 2-83 (84)
71 KOG4318 Bicoid mRNA stability 98.2 4.9E-06 1.1E-10 64.8 7.1 140 1-141 31-245 (1088)
72 COG5010 TadD Flp pilus assembl 98.2 0.00012 2.6E-09 49.8 12.9 122 3-127 108-229 (257)
73 COG2956 Predicted N-acetylgluc 98.2 0.00021 4.6E-09 50.3 14.0 128 3-134 77-214 (389)
74 TIGR00540 hemY_coli hemY prote 98.2 0.00011 2.5E-09 53.9 13.6 124 5-129 163-292 (409)
75 TIGR03302 OM_YfiO outer membra 98.2 0.00019 4.1E-09 48.6 13.7 125 3-129 41-195 (235)
76 PRK10747 putative protoheme IX 98.2 0.00021 4.5E-09 52.4 14.7 117 3-126 271-387 (398)
77 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00033 7.1E-09 41.9 12.6 96 33-128 5-104 (119)
78 PF12895 Apc3: Anaphase-promot 98.1 5.5E-06 1.2E-10 47.2 4.4 81 43-125 2-83 (84)
79 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00029 6.2E-09 42.2 12.1 93 3-95 10-106 (119)
80 COG4783 Putative Zn-dependent 98.1 0.00036 7.9E-09 51.4 14.2 119 5-127 316-435 (484)
81 TIGR03302 OM_YfiO outer membra 98.1 0.0005 1.1E-08 46.5 14.3 121 4-128 79-231 (235)
82 PLN03088 SGT1, suppressor of 98.1 0.00031 6.7E-09 50.8 13.6 96 4-103 11-106 (356)
83 PF14559 TPR_19: Tetratricopep 98.1 4.1E-05 8.9E-10 41.6 6.9 64 6-72 2-65 (68)
84 KOG1155 Anaphase-promoting com 98.1 0.00037 8E-09 51.3 13.3 120 5-128 374-494 (559)
85 KOG2002 TPR-containing nuclear 98.0 6.4E-05 1.4E-09 59.2 9.8 118 8-127 625-743 (1018)
86 COG3071 HemY Uncharacterized e 98.0 0.0013 2.7E-08 47.5 15.2 127 8-136 97-223 (400)
87 KOG3941 Intermediate in Toll s 98.0 0.00022 4.9E-09 49.5 11.0 90 27-116 64-174 (406)
88 PF12921 ATP13: Mitochondrial 98.0 0.00037 7.9E-09 42.9 10.8 87 29-115 1-103 (126)
89 KOG4626 O-linked N-acetylgluco 98.0 6.7E-05 1.5E-09 57.1 8.9 120 5-128 262-382 (966)
90 cd05804 StaR_like StaR_like; a 98.0 0.00076 1.6E-08 48.3 14.2 96 32-128 116-214 (355)
91 KOG1070 rRNA processing protei 97.9 0.00059 1.3E-08 56.0 13.7 125 1-129 1536-1663(1710)
92 KOG1129 TPR repeat-containing 97.9 0.00035 7.7E-09 49.5 11.0 122 3-129 231-353 (478)
93 PRK10370 formate-dependent nit 97.9 0.00084 1.8E-08 44.6 12.3 96 3-101 81-179 (198)
94 PRK15363 pathogenicity island 97.9 0.00056 1.2E-08 43.5 10.7 88 37-126 42-129 (157)
95 PF12569 NARP1: NMDA receptor- 97.9 0.00093 2E-08 50.6 13.5 125 3-129 202-334 (517)
96 PF05843 Suf: Suppressor of fo 97.9 0.00053 1.1E-08 48.0 11.5 125 2-129 8-136 (280)
97 KOG3081 Vesicle coat complex C 97.8 0.0022 4.8E-08 44.2 13.2 130 4-138 146-280 (299)
98 PRK02603 photosystem I assembl 97.8 0.0021 4.6E-08 41.5 12.8 99 29-128 34-148 (172)
99 KOG1126 DNA-binding cell divis 97.8 0.00021 4.6E-09 54.2 8.8 117 4-126 430-549 (638)
100 PLN03088 SGT1, suppressor of 97.8 0.0015 3.3E-08 47.3 13.0 91 38-130 10-100 (356)
101 KOG2076 RNA polymerase III tra 97.8 0.0058 1.3E-07 48.3 16.4 125 8-136 152-277 (895)
102 cd05804 StaR_like StaR_like; a 97.8 0.0034 7.4E-08 44.9 14.6 120 5-129 53-177 (355)
103 COG5010 TadD Flp pilus assembl 97.8 0.0025 5.4E-08 43.6 12.8 120 7-129 78-197 (257)
104 PF09976 TPR_21: Tetratricopep 97.8 0.00057 1.2E-08 43.0 9.4 86 3-90 56-143 (145)
105 CHL00033 ycf3 photosystem I as 97.8 0.0025 5.3E-08 41.0 12.3 113 11-124 15-137 (168)
106 PF05843 Suf: Suppressor of fo 97.7 0.00058 1.3E-08 47.8 9.8 97 31-129 2-99 (280)
107 COG3071 HemY Uncharacterized e 97.7 0.0026 5.7E-08 45.9 12.9 122 5-128 163-291 (400)
108 PF13432 TPR_16: Tetratricopep 97.7 0.00021 4.6E-09 38.4 6.1 54 4-58 6-59 (65)
109 CHL00033 ycf3 photosystem I as 97.7 0.0017 3.8E-08 41.7 11.1 87 4-91 44-139 (168)
110 KOG1840 Kinesin light chain [C 97.7 0.0023 5E-08 48.3 12.8 125 3-127 333-477 (508)
111 PF03704 BTAD: Bacterial trans 97.7 0.00025 5.4E-09 44.6 6.6 74 30-104 62-140 (146)
112 KOG1915 Cell cycle control pro 97.7 0.0054 1.2E-07 45.7 14.1 82 7-92 153-234 (677)
113 KOG1126 DNA-binding cell divis 97.7 0.0032 6.9E-08 48.1 13.0 119 5-127 499-618 (638)
114 PF03704 BTAD: Bacterial trans 97.6 0.00097 2.1E-08 41.9 9.0 105 7-129 18-125 (146)
115 PRK15363 pathogenicity island 97.6 0.0052 1.1E-07 39.2 11.7 87 5-93 45-131 (157)
116 PF14559 TPR_19: Tetratricopep 97.6 0.00063 1.4E-08 36.8 6.6 50 43-93 4-53 (68)
117 KOG1840 Kinesin light chain [C 97.6 0.0032 6.9E-08 47.6 12.1 126 2-127 206-352 (508)
118 KOG2076 RNA polymerase III tra 97.6 0.0034 7.3E-08 49.5 12.4 121 6-128 388-511 (895)
119 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0015 3.3E-08 47.8 10.0 88 2-92 207-295 (395)
120 PRK15179 Vi polysaccharide bio 97.6 0.0044 9.5E-08 48.7 13.1 102 2-106 127-228 (694)
121 PF12921 ATP13: Mitochondrial 97.6 0.0024 5.2E-08 39.3 9.5 66 64-129 1-81 (126)
122 KOG1173 Anaphase-promoting com 97.5 0.0034 7.4E-08 47.3 11.5 121 5-127 390-516 (611)
123 PRK02603 photosystem I assembl 97.5 0.0095 2.1E-07 38.5 14.4 81 4-85 44-126 (172)
124 PF04840 Vps16_C: Vps16, C-ter 97.5 0.0021 4.6E-08 45.8 9.9 101 4-124 186-286 (319)
125 KOG3941 Intermediate in Toll s 97.5 0.0018 3.8E-08 45.2 8.9 85 7-91 84-185 (406)
126 KOG1129 TPR repeat-containing 97.5 0.0027 5.9E-08 45.2 10.0 122 5-128 334-457 (478)
127 KOG2003 TPR repeat-containing 97.5 0.014 3E-07 43.5 13.6 116 9-128 572-688 (840)
128 KOG2002 TPR-containing nuclear 97.4 0.003 6.6E-08 50.3 10.7 128 4-132 655-801 (1018)
129 PRK10153 DNA-binding transcrip 97.4 0.021 4.6E-07 43.5 15.0 117 9-128 356-481 (517)
130 PF13432 TPR_16: Tetratricopep 97.4 0.0017 3.7E-08 34.8 6.8 53 74-127 6-58 (65)
131 PLN02789 farnesyltranstransfer 97.4 0.024 5.2E-07 40.6 14.9 123 4-129 46-171 (320)
132 KOG4340 Uncharacterized conser 97.4 0.0064 1.4E-07 42.9 10.8 120 5-125 154-335 (459)
133 KOG0553 TPR repeat-containing 97.4 0.0067 1.4E-07 42.4 10.6 100 5-109 91-191 (304)
134 PF12688 TPR_5: Tetratrico pep 97.3 0.012 2.7E-07 35.9 12.4 101 5-111 11-117 (120)
135 KOG1915 Cell cycle control pro 97.3 0.022 4.8E-07 42.6 13.4 104 25-129 432-536 (677)
136 KOG2053 Mitochondrial inherita 97.3 0.012 2.6E-07 46.7 12.5 116 6-127 20-137 (932)
137 PRK10803 tol-pal system protei 97.3 0.018 3.8E-07 40.1 12.3 99 30-130 143-247 (263)
138 PF13414 TPR_11: TPR repeat; P 97.3 0.0047 1E-07 33.4 7.6 62 30-92 3-65 (69)
139 KOG0547 Translocase of outer m 97.3 0.0078 1.7E-07 44.9 10.5 117 4-126 437-563 (606)
140 PRK14720 transcript cleavage f 97.3 0.013 2.8E-07 47.1 12.5 124 1-129 37-178 (906)
141 PF13371 TPR_9: Tetratricopept 97.3 0.0026 5.6E-08 34.8 6.5 55 3-58 3-57 (73)
142 smart00299 CLH Clathrin heavy 97.2 0.018 3.9E-07 35.8 11.0 107 2-125 14-121 (140)
143 PF12569 NARP1: NMDA receptor- 97.2 0.056 1.2E-06 41.2 16.0 38 102-139 196-233 (517)
144 PF12688 TPR_5: Tetratrico pep 97.2 0.018 3.9E-07 35.2 11.2 88 38-127 9-102 (120)
145 PRK10803 tol-pal system protei 97.2 0.021 4.6E-07 39.7 11.8 89 6-94 154-246 (263)
146 PF13424 TPR_12: Tetratricopep 97.2 0.0026 5.6E-08 35.4 6.0 62 31-92 6-73 (78)
147 PF13170 DUF4003: Protein of u 97.1 0.015 3.2E-07 41.2 10.5 123 11-133 78-215 (297)
148 PF13414 TPR_11: TPR repeat; P 97.1 0.0065 1.4E-07 32.8 7.1 64 64-128 2-66 (69)
149 KOG1128 Uncharacterized conser 97.1 0.012 2.7E-07 45.7 10.2 121 6-130 496-617 (777)
150 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.032 6.9E-07 41.5 11.9 65 28-94 73-141 (453)
151 KOG1070 rRNA processing protei 97.0 0.057 1.2E-06 45.2 14.0 115 6-124 1469-1588(1710)
152 PRK14720 transcript cleavage f 97.0 0.034 7.3E-07 44.9 12.2 125 3-131 124-254 (906)
153 KOG2047 mRNA splicing factor [ 96.9 0.081 1.8E-06 41.1 13.3 119 6-128 113-276 (835)
154 PRK15331 chaperone protein Sic 96.9 0.02 4.4E-07 36.8 8.7 85 7-93 49-133 (165)
155 KOG1125 TPR repeat-containing 96.9 0.021 4.6E-07 43.3 10.0 114 10-127 409-525 (579)
156 KOG1173 Anaphase-promoting com 96.9 0.025 5.5E-07 42.9 10.3 104 7-113 426-535 (611)
157 KOG2376 Signal recognition par 96.8 0.041 8.9E-07 42.0 11.1 118 2-129 19-139 (652)
158 PF13371 TPR_9: Tetratricopept 96.8 0.027 5.8E-07 30.7 7.9 56 38-94 3-58 (73)
159 KOG1128 Uncharacterized conser 96.8 0.016 3.6E-07 45.1 8.8 129 2-135 431-587 (777)
160 PRK10866 outer membrane biogen 96.8 0.093 2E-06 36.1 14.2 71 5-75 42-114 (243)
161 PF14938 SNAP: Soluble NSF att 96.7 0.046 1E-06 38.3 10.5 134 4-138 123-272 (282)
162 KOG0547 Translocase of outer m 96.7 0.062 1.3E-06 40.4 11.2 119 4-126 369-488 (606)
163 KOG0495 HAT repeat protein [RN 96.7 0.077 1.7E-06 41.4 11.8 128 7-141 731-860 (913)
164 KOG3785 Uncharacterized conser 96.7 0.028 6E-07 40.7 8.9 116 9-129 373-490 (557)
165 COG3629 DnrI DNA-binding trans 96.7 0.07 1.5E-06 37.4 10.7 80 31-111 154-238 (280)
166 PF13424 TPR_12: Tetratricopep 96.7 0.0089 1.9E-07 33.2 5.4 62 66-127 6-73 (78)
167 KOG3060 Uncharacterized conser 96.7 0.12 2.5E-06 35.8 14.6 83 43-127 99-181 (289)
168 KOG2003 TPR repeat-containing 96.7 0.074 1.6E-06 39.8 11.2 109 3-115 600-709 (840)
169 COG4783 Putative Zn-dependent 96.7 0.18 3.8E-06 37.8 13.4 89 3-93 348-436 (484)
170 KOG0495 HAT repeat protein [RN 96.6 0.24 5.3E-06 38.8 13.8 112 8-124 597-709 (913)
171 KOG4570 Uncharacterized conser 96.6 0.043 9.3E-07 39.1 9.1 101 24-128 58-163 (418)
172 PRK15331 chaperone protein Sic 96.6 0.06 1.3E-06 34.6 9.1 88 38-128 45-133 (165)
173 KOG1914 mRNA cleavage and poly 96.5 0.18 3.8E-06 38.5 12.4 116 11-129 347-464 (656)
174 PF09205 DUF1955: Domain of un 96.4 0.12 2.5E-06 32.3 9.8 64 31-95 87-150 (161)
175 PF14938 SNAP: Soluble NSF att 96.3 0.15 3.2E-06 35.8 11.0 123 6-129 85-225 (282)
176 PF04840 Vps16_C: Vps16, C-ter 96.3 0.04 8.6E-07 39.4 8.2 88 31-128 178-265 (319)
177 PF00637 Clathrin: Region in C 96.3 0.0017 3.7E-08 40.6 0.9 85 1-92 13-97 (143)
178 KOG1125 TPR repeat-containing 96.3 0.36 7.9E-06 36.9 14.2 132 5-141 295-469 (579)
179 KOG1914 mRNA cleavage and poly 96.2 0.39 8.5E-06 36.8 13.3 121 6-129 377-501 (656)
180 KOG2047 mRNA splicing factor [ 96.1 0.48 1E-05 37.1 13.0 135 7-143 489-629 (835)
181 PLN02789 farnesyltranstransfer 96.1 0.31 6.8E-06 34.9 15.7 133 7-142 83-227 (320)
182 KOG0543 FKBP-type peptidyl-pro 96.1 0.33 7.1E-06 35.6 11.7 124 3-129 216-355 (397)
183 KOG4555 TPR repeat-containing 96.1 0.17 3.8E-06 31.6 11.5 90 4-95 52-145 (175)
184 KOG0548 Molecular co-chaperone 96.1 0.2 4.3E-06 37.9 10.7 103 4-110 11-114 (539)
185 COG3629 DnrI DNA-binding trans 96.0 0.16 3.4E-06 35.7 9.6 75 67-142 155-233 (280)
186 KOG0553 TPR repeat-containing 96.0 0.15 3.2E-06 36.0 9.3 86 40-127 91-176 (304)
187 PRK04841 transcriptional regul 96.0 0.33 7.1E-06 39.4 12.7 125 4-128 500-640 (903)
188 PF10300 DUF3808: Protein of u 96.0 0.47 1E-05 35.9 12.6 120 7-129 245-376 (468)
189 KOG3616 Selective LIM binding 95.9 0.054 1.2E-06 42.9 7.6 105 6-123 743-847 (1636)
190 KOG2376 Signal recognition par 95.9 0.46 9.9E-06 36.7 12.1 123 2-128 383-519 (652)
191 PF04053 Coatomer_WDAD: Coatom 95.9 0.13 2.9E-06 38.5 9.3 100 6-126 329-428 (443)
192 PF07035 Mic1: Colon cancer-as 95.9 0.25 5.5E-06 32.0 13.3 104 14-127 13-116 (167)
193 KOG4162 Predicted calmodulin-b 95.9 0.69 1.5E-05 36.7 13.6 118 4-125 659-779 (799)
194 PF13512 TPR_18: Tetratricopep 95.8 0.23 5.1E-06 31.2 9.9 51 43-93 23-75 (142)
195 PRK04841 transcriptional regul 95.8 0.5 1.1E-05 38.4 12.9 124 5-128 462-601 (903)
196 PF13929 mRNA_stabil: mRNA sta 95.7 0.36 7.8E-06 34.0 10.3 118 8-125 141-263 (292)
197 COG1729 Uncharacterized protei 95.7 0.41 8.9E-06 33.3 11.3 102 30-134 142-249 (262)
198 PF04184 ST7: ST7 protein; In 95.7 0.32 7E-06 36.8 10.4 60 69-128 263-323 (539)
199 KOG3060 Uncharacterized conser 95.6 0.45 9.8E-06 33.0 13.8 117 7-127 98-218 (289)
200 PF10602 RPN7: 26S proteasome 95.6 0.36 7.8E-06 31.6 10.1 97 30-128 36-141 (177)
201 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.19 4.2E-06 37.5 8.9 64 63-128 73-140 (453)
202 KOG4340 Uncharacterized conser 95.5 0.12 2.5E-06 36.8 7.1 117 8-129 125-270 (459)
203 KOG1156 N-terminal acetyltrans 95.4 0.7 1.5E-05 36.1 11.5 122 2-128 378-510 (700)
204 KOG3617 WD40 and TPR repeat-co 95.4 0.35 7.7E-06 39.0 10.1 105 4-124 737-850 (1416)
205 KOG2280 Vacuolar assembly/sort 95.3 0.15 3.2E-06 40.2 8.0 101 5-124 694-794 (829)
206 PRK10153 DNA-binding transcrip 95.2 1 2.2E-05 34.7 12.1 89 11-103 400-489 (517)
207 COG4235 Cytochrome c biogenesi 95.2 0.71 1.5E-05 32.5 15.0 116 12-130 139-257 (287)
208 KOG2796 Uncharacterized conser 95.1 0.66 1.4E-05 32.6 9.7 118 9-129 191-315 (366)
209 KOG3616 Selective LIM binding 95.0 0.16 3.4E-06 40.5 7.2 113 3-126 773-908 (1636)
210 KOG2053 Mitochondrial inherita 94.8 0.87 1.9E-05 36.8 10.8 86 5-93 53-138 (932)
211 COG5107 RNA14 Pre-mRNA 3'-end 94.8 0.53 1.2E-05 35.4 9.2 92 30-124 397-490 (660)
212 KOG1127 TPR repeat-containing 94.7 0.37 8E-06 39.5 8.7 29 99-127 595-623 (1238)
213 PF13176 TPR_7: Tetratricopept 94.7 0.094 2E-06 24.5 3.7 23 33-55 2-24 (36)
214 KOG0548 Molecular co-chaperone 94.7 0.93 2E-05 34.5 10.3 88 4-94 367-455 (539)
215 PF13929 mRNA_stabil: mRNA sta 94.6 1.1 2.3E-05 31.7 10.0 88 25-112 197-290 (292)
216 KOG4162 Predicted calmodulin-b 94.6 0.51 1.1E-05 37.4 9.0 89 5-95 694-784 (799)
217 PF13170 DUF4003: Protein of u 94.5 1.2 2.6E-05 31.7 11.3 120 10-129 118-250 (297)
218 PF02284 COX5A: Cytochrome c o 94.5 0.55 1.2E-05 27.8 8.3 74 33-108 11-87 (108)
219 PF04184 ST7: ST7 protein; In 94.4 0.32 6.9E-06 36.8 7.4 72 4-76 268-342 (539)
220 KOG1156 N-terminal acetyltrans 94.4 1.9 4.2E-05 33.8 12.6 122 6-131 52-174 (700)
221 KOG2796 Uncharacterized conser 94.4 1.2 2.6E-05 31.3 10.5 102 30-131 177-283 (366)
222 COG4649 Uncharacterized protei 94.3 0.95 2.1E-05 29.8 13.9 124 5-128 68-195 (221)
223 KOG3785 Uncharacterized conser 94.2 0.63 1.4E-05 34.0 8.3 91 35-127 364-455 (557)
224 PF13512 TPR_18: Tetratricopep 94.1 0.86 1.9E-05 28.7 11.5 77 6-82 21-99 (142)
225 PF13176 TPR_7: Tetratricopept 94.1 0.11 2.4E-06 24.2 3.2 24 102-125 1-24 (36)
226 COG4700 Uncharacterized protei 94.1 1.1 2.5E-05 29.8 12.5 114 3-120 97-213 (251)
227 KOG0276 Vesicle coat complex C 93.9 1.4 3E-05 34.4 9.9 99 6-125 648-746 (794)
228 KOG0985 Vesicle coat protein c 93.8 2.3 5E-05 35.5 11.4 111 5-123 1058-1189(1666)
229 PF13525 YfiO: Outer membrane 93.8 1.3 2.8E-05 29.5 12.4 126 4-131 14-172 (203)
230 PF13762 MNE1: Mitochondrial s 93.7 1.1 2.4E-05 28.4 11.2 96 22-117 29-132 (145)
231 PF10602 RPN7: 26S proteasome 93.6 1.3 2.8E-05 29.0 8.8 90 3-92 44-140 (177)
232 PF13428 TPR_14: Tetratricopep 93.6 0.19 4.1E-06 24.6 3.6 26 68-93 4-29 (44)
233 COG3118 Thioredoxin domain-con 93.6 1.8 4E-05 30.7 12.5 121 5-129 144-265 (304)
234 smart00299 CLH Clathrin heavy 93.5 1.1 2.3E-05 27.7 9.9 56 32-89 9-64 (140)
235 KOG4570 Uncharacterized conser 93.5 1.7 3.7E-05 31.3 9.2 86 7-94 76-164 (418)
236 KOG2114 Vacuolar assembly/sort 93.2 1.1 2.4E-05 36.1 8.7 81 5-92 378-458 (933)
237 PF13281 DUF4071: Domain of un 93.2 2.5 5.5E-05 31.1 14.2 126 8-136 195-340 (374)
238 KOG0624 dsRNA-activated protei 93.2 2.5 5.4E-05 31.0 14.8 122 4-127 115-250 (504)
239 PF09205 DUF1955: Domain of un 93.2 1.3 2.9E-05 27.8 12.9 118 7-128 14-148 (161)
240 PF00637 Clathrin: Region in C 93.2 0.02 4.4E-07 35.7 -0.5 88 35-129 12-99 (143)
241 PF13428 TPR_14: Tetratricopep 93.1 0.52 1.1E-05 22.9 5.4 28 32-59 3-30 (44)
242 PF11207 DUF2989: Protein of u 93.1 1.8 3.9E-05 29.0 9.7 82 37-120 114-198 (203)
243 cd00923 Cyt_c_Oxidase_Va Cytoc 93.0 1.1 2.4E-05 26.3 9.3 62 45-108 22-84 (103)
244 PF07079 DUF1347: Protein of u 93.0 3.1 6.8E-05 31.5 10.6 128 5-136 16-166 (549)
245 PF13374 TPR_10: Tetratricopep 92.9 0.43 9.2E-06 22.5 4.3 27 31-57 3-29 (42)
246 PF13431 TPR_17: Tetratricopep 92.9 0.2 4.3E-06 23.1 2.9 22 29-50 12-33 (34)
247 KOG1127 TPR repeat-containing 92.6 2.6 5.6E-05 34.9 10.0 84 5-92 572-657 (1238)
248 COG5107 RNA14 Pre-mRNA 3'-end 92.4 3.9 8.3E-05 31.1 10.6 118 7-128 409-530 (660)
249 KOG0985 Vesicle coat protein c 92.2 4.6 0.0001 33.9 10.9 57 29-87 1132-1188(1666)
250 cd00923 Cyt_c_Oxidase_Va Cytoc 92.1 1.5 3.2E-05 25.8 6.5 49 80-128 22-70 (103)
251 PF13374 TPR_10: Tetratricopep 91.5 0.58 1.3E-05 22.0 3.8 28 101-128 3-30 (42)
252 KOG4648 Uncharacterized conser 91.5 1.5 3.4E-05 32.0 7.1 78 4-91 106-184 (536)
253 PF00515 TPR_1: Tetratricopept 91.4 0.73 1.6E-05 20.7 4.3 27 32-58 3-29 (34)
254 PF10366 Vps39_1: Vacuolar sor 91.3 2 4.4E-05 25.7 6.7 27 67-93 41-67 (108)
255 COG4105 ComL DNA uptake lipopr 91.3 3.6 7.9E-05 28.6 14.7 72 6-77 45-118 (254)
256 KOG2610 Uncharacterized conser 91.3 4.5 9.7E-05 29.6 10.1 87 38-125 183-272 (491)
257 KOG2114 Vacuolar assembly/sort 91.0 5.9 0.00013 32.2 10.3 113 3-127 342-458 (933)
258 PF08631 SPO22: Meiosis protei 90.9 4.2 9E-05 28.5 14.6 125 6-131 4-152 (278)
259 KOG0543 FKBP-type peptidyl-pro 90.9 5.1 0.00011 29.7 9.3 87 3-92 265-353 (397)
260 PF07163 Pex26: Pex26 protein; 90.6 4.7 0.0001 28.6 10.0 92 33-124 86-182 (309)
261 KOG2280 Vacuolar assembly/sort 90.5 2 4.4E-05 34.2 7.4 92 27-128 681-772 (829)
262 KOG1174 Anaphase-promoting com 90.3 6.3 0.00014 29.7 13.4 121 4-127 343-498 (564)
263 TIGR03504 FimV_Cterm FimV C-te 90.3 0.76 1.7E-05 22.7 3.5 21 72-92 6-26 (44)
264 COG4455 ImpE Protein of avirul 89.8 3.5 7.6E-05 28.2 7.2 73 2-75 8-82 (273)
265 COG1729 Uncharacterized protei 89.7 5.4 0.00012 27.9 12.4 93 5-100 151-248 (262)
266 PF13525 YfiO: Outer membrane 89.6 4.4 9.6E-05 26.9 8.9 57 38-94 13-71 (203)
267 KOG1174 Anaphase-promoting com 89.6 7.4 0.00016 29.3 11.6 27 99-125 367-393 (564)
268 PF02284 COX5A: Cytochrome c o 89.1 3.3 7.1E-05 24.6 8.8 62 68-129 11-74 (108)
269 COG4105 ComL DNA uptake lipopr 88.7 6.3 0.00014 27.4 8.6 82 29-111 34-117 (254)
270 COG1747 Uncharacterized N-term 88.0 11 0.00024 29.3 12.1 124 2-130 73-235 (711)
271 PF07721 TPR_4: Tetratricopept 87.6 0.83 1.8E-05 19.5 2.3 20 105-124 6-25 (26)
272 PF11846 DUF3366: Domain of un 87.6 6 0.00013 26.0 7.5 31 62-92 141-171 (193)
273 PF11846 DUF3366: Domain of un 87.4 4.8 0.0001 26.5 6.9 57 72-128 115-172 (193)
274 KOG4077 Cytochrome c oxidase, 87.3 5.2 0.00011 24.9 7.7 48 45-92 64-111 (149)
275 PRK10866 outer membrane biogen 87.2 7.7 0.00017 26.7 12.2 76 32-109 35-113 (243)
276 PF14689 SPOB_a: Sensor_kinase 87.1 2.6 5.7E-05 22.4 4.5 22 70-91 28-49 (62)
277 COG3947 Response regulator con 86.8 5.4 0.00012 28.6 6.9 101 26-127 223-340 (361)
278 COG3118 Thioredoxin domain-con 86.7 9.4 0.0002 27.3 10.7 117 2-121 175-293 (304)
279 TIGR02508 type_III_yscG type I 86.7 4.9 0.00011 23.9 9.2 50 40-95 49-98 (115)
280 COG4455 ImpE Protein of avirul 86.4 8.6 0.00019 26.5 7.9 59 32-91 3-61 (273)
281 PF13281 DUF4071: Domain of un 86.2 12 0.00025 27.8 10.6 75 36-110 147-227 (374)
282 PF00515 TPR_1: Tetratricopept 86.2 2.1 4.5E-05 19.1 4.5 27 67-93 3-29 (34)
283 KOG4077 Cytochrome c oxidase, 86.1 4.7 0.0001 25.1 5.6 46 83-128 67-112 (149)
284 TIGR02508 type_III_yscG type I 85.8 5.5 0.00012 23.7 7.8 87 45-138 20-106 (115)
285 TIGR03504 FimV_Cterm FimV C-te 85.7 2.8 6.1E-05 20.7 3.8 22 106-127 5-26 (44)
286 PF10579 Rapsyn_N: Rapsyn N-te 85.7 3.9 8.4E-05 23.1 4.7 46 42-87 18-65 (80)
287 PF10300 DUF3808: Protein of u 85.6 14 0.0003 28.2 12.9 128 2-131 195-336 (468)
288 PRK10564 maltose regulon perip 85.6 2.6 5.6E-05 30.0 4.9 29 34-62 261-289 (303)
289 KOG4555 TPR repeat-containing 85.5 7 0.00015 24.7 9.6 86 39-126 52-141 (175)
290 COG4235 Cytochrome c biogenesi 85.4 11 0.00024 26.8 11.4 102 3-109 164-269 (287)
291 PF11848 DUF3368: Domain of un 85.3 3.3 7.2E-05 20.7 5.0 30 78-107 15-44 (48)
292 KOG2908 26S proteasome regulat 85.2 13 0.00027 27.3 8.6 78 5-82 85-174 (380)
293 cd08819 CARD_MDA5_2 Caspase ac 85.1 5.4 0.00012 22.9 7.0 66 49-120 21-86 (88)
294 PF14689 SPOB_a: Sensor_kinase 84.9 4.2 9.2E-05 21.6 5.0 47 10-58 5-51 (62)
295 PF11848 DUF3368: Domain of un 84.8 3.6 7.7E-05 20.6 5.1 35 40-74 12-46 (48)
296 COG5108 RPO41 Mitochondrial DN 84.1 7 0.00015 31.3 7.0 77 1-77 34-115 (1117)
297 PRK10564 maltose regulon perip 84.1 3.4 7.4E-05 29.5 5.0 47 61-107 252-299 (303)
298 COG3898 Uncharacterized membra 83.5 17 0.00036 27.4 14.0 24 105-128 268-291 (531)
299 PF04053 Coatomer_WDAD: Coatom 83.4 18 0.00038 27.5 12.0 110 7-126 273-399 (443)
300 COG0735 Fur Fe2+/Zn2+ uptake r 83.1 9.3 0.0002 24.1 6.5 64 16-80 7-70 (145)
301 PF10366 Vps39_1: Vacuolar sor 83.0 6.3 0.00014 23.5 5.3 27 102-128 41-67 (108)
302 TIGR02561 HrpB1_HrpK type III 82.9 9.9 0.00021 24.3 9.1 51 8-60 23-74 (153)
303 PF11663 Toxin_YhaV: Toxin wit 82.9 1.5 3.3E-05 27.3 2.6 30 79-110 109-138 (140)
304 COG4649 Uncharacterized protei 82.9 11 0.00025 25.0 11.0 99 4-102 103-204 (221)
305 PF02847 MA3: MA3 domain; Int 82.7 5.2 0.00011 23.7 4.9 61 34-96 6-68 (113)
306 PF07719 TPR_2: Tetratricopept 82.5 3.2 6.9E-05 18.3 4.3 25 33-57 4-28 (34)
307 PRK15180 Vi polysaccharide bio 82.3 21 0.00045 27.7 8.6 115 9-127 303-418 (831)
308 KOG4648 Uncharacterized conser 82.0 7.4 0.00016 28.7 6.0 48 38-87 105-153 (536)
309 KOG2041 WD40 repeat protein [G 81.9 12 0.00026 30.3 7.5 106 9-124 748-876 (1189)
310 COG0457 NrfG FOG: TPR repeat [ 81.9 11 0.00023 23.9 14.5 121 5-127 140-263 (291)
311 PF10155 DUF2363: Uncharacteri 81.8 9.9 0.00021 23.5 10.7 113 9-127 3-125 (126)
312 PF11838 ERAP1_C: ERAP1-like C 81.7 16 0.00034 25.9 13.5 113 8-124 143-261 (324)
313 PF08771 Rapamycin_bind: Rapam 81.7 2.8 6E-05 24.7 3.4 51 40-92 24-75 (100)
314 PF13174 TPR_6: Tetratricopept 81.4 3.4 7.5E-05 18.0 3.4 22 72-93 7-28 (33)
315 PF09613 HrpB1_HrpK: Bacterial 81.4 12 0.00026 24.2 11.8 52 6-59 21-73 (160)
316 PF11207 DUF2989: Protein of u 81.2 14 0.0003 24.9 9.4 73 12-85 123-198 (203)
317 KOG1550 Extracellular protein 81.2 24 0.00052 27.5 12.8 121 5-130 259-394 (552)
318 PF02847 MA3: MA3 domain; Int 80.7 7 0.00015 23.1 5.0 61 68-130 5-67 (113)
319 PF10475 DUF2450: Protein of u 80.4 18 0.00039 25.6 8.3 29 30-58 127-155 (291)
320 PF13181 TPR_8: Tetratricopept 80.3 4 8.7E-05 18.1 4.4 23 69-91 5-27 (34)
321 PRK11639 zinc uptake transcrip 80.2 13 0.00029 24.0 6.7 61 21-82 17-77 (169)
322 PF07163 Pex26: Pex26 protein; 79.9 19 0.00042 25.6 9.6 85 2-88 90-181 (309)
323 KOG1538 Uncharacterized conser 79.3 20 0.00043 28.9 7.9 47 74-129 756-802 (1081)
324 PF14840 DNA_pol3_delt_C: Proc 79.1 2.6 5.7E-05 25.9 2.7 28 8-35 10-37 (125)
325 KOG3617 WD40 and TPR repeat-co 78.6 38 0.00082 28.3 10.8 71 8-90 813-883 (1416)
326 cd00280 TRFH Telomeric Repeat 78.5 17 0.00037 24.2 7.8 48 11-58 85-139 (200)
327 PF14669 Asp_Glu_race_2: Putat 78.4 12 0.00025 25.2 5.6 56 70-125 137-206 (233)
328 cd07153 Fur_like Ferric uptake 78.0 7.3 0.00016 23.2 4.5 47 36-82 6-52 (116)
329 PF09613 HrpB1_HrpK: Bacterial 77.6 16 0.00036 23.6 11.3 77 32-112 9-89 (160)
330 PF11663 Toxin_YhaV: Toxin wit 77.1 2.5 5.4E-05 26.4 2.2 29 45-75 110-138 (140)
331 KOG0403 Neoplastic transformat 77.1 13 0.00029 28.3 6.2 70 4-78 518-587 (645)
332 COG4700 Uncharacterized protei 76.9 20 0.00043 24.2 14.0 106 26-133 85-193 (251)
333 PRK11906 transcriptional regul 76.3 32 0.00069 26.3 13.5 114 8-125 317-432 (458)
334 PF09477 Type_III_YscG: Bacter 76.1 15 0.00032 22.2 7.9 82 45-133 21-102 (116)
335 KOG1538 Uncharacterized conser 75.9 20 0.00044 28.8 7.1 77 41-128 758-845 (1081)
336 KOG0550 Molecular chaperone (D 75.7 32 0.0007 26.0 10.0 86 7-92 215-314 (486)
337 PF07035 Mic1: Colon cancer-as 75.5 20 0.00042 23.4 8.9 54 49-106 13-66 (167)
338 PF13762 MNE1: Mitochondrial s 75.4 18 0.00039 23.0 8.0 82 3-84 47-134 (145)
339 COG0735 Fur Fe2+/Zn2+ uptake r 75.2 18 0.00039 22.8 6.2 43 53-96 9-51 (145)
340 PF09454 Vps23_core: Vps23 cor 75.0 11 0.00024 20.3 4.6 34 28-61 6-39 (65)
341 KOG2908 26S proteasome regulat 74.9 31 0.00066 25.4 8.6 67 35-101 80-156 (380)
342 KOG2610 Uncharacterized conser 74.7 32 0.00069 25.5 11.0 117 8-126 116-235 (491)
343 PF02184 HAT: HAT (Half-A-TPR) 74.3 5.8 0.00013 18.2 2.5 21 46-68 3-23 (32)
344 PF09454 Vps23_core: Vps23 cor 74.3 11 0.00025 20.3 4.1 51 62-113 5-55 (65)
345 PF01475 FUR: Ferric uptake re 73.8 6.6 0.00014 23.6 3.5 46 34-79 11-56 (120)
346 PF09477 Type_III_YscG: Bacter 73.6 17 0.00037 21.9 8.4 88 10-105 21-108 (116)
347 COG3947 Response regulator con 73.5 32 0.00068 24.9 8.3 73 31-104 280-357 (361)
348 COG0457 NrfG FOG: TPR repeat [ 73.3 20 0.00044 22.5 14.4 51 76-126 178-228 (291)
349 PF10579 Rapsyn_N: Rapsyn N-te 73.2 14 0.00031 20.8 5.6 47 77-123 18-66 (80)
350 KOG0550 Molecular chaperone (D 73.1 38 0.00083 25.7 9.5 87 5-95 259-351 (486)
351 KOG1130 Predicted G-alpha GTPa 72.9 26 0.00057 26.6 6.8 121 5-125 205-340 (639)
352 PF13934 ELYS: Nuclear pore co 72.6 28 0.0006 23.8 8.2 20 36-55 114-133 (226)
353 smart00386 HAT HAT (Half-A-TPR 72.5 6.8 0.00015 16.8 3.9 28 9-37 1-28 (33)
354 PF12796 Ank_2: Ankyrin repeat 71.8 15 0.00032 20.4 5.0 15 5-19 4-18 (89)
355 PF11817 Foie-gras_1: Foie gra 71.7 30 0.00065 23.8 8.0 60 68-127 181-245 (247)
356 COG2987 HutU Urocanate hydrata 70.7 4.7 0.0001 30.5 2.7 60 7-79 215-278 (561)
357 PF07079 DUF1347: Protein of u 69.4 50 0.0011 25.4 13.5 118 8-128 393-523 (549)
358 PF02607 B12-binding_2: B12 bi 69.3 11 0.00023 20.7 3.5 39 42-80 13-51 (79)
359 cd08819 CARD_MDA5_2 Caspase ac 69.2 20 0.00042 20.7 7.3 66 14-85 21-86 (88)
360 cd07153 Fur_like Ferric uptake 68.5 9.9 0.00022 22.6 3.5 45 2-46 7-51 (116)
361 PF10475 DUF2450: Protein of u 68.3 39 0.00085 24.0 6.9 79 2-85 134-217 (291)
362 KOG0403 Neoplastic transformat 68.0 53 0.0011 25.3 7.5 60 68-128 512-571 (645)
363 PF02607 B12-binding_2: B12 bi 67.7 6.9 0.00015 21.5 2.5 41 6-46 12-52 (79)
364 KOG4234 TPR repeat-containing 67.5 37 0.0008 23.2 9.6 89 5-94 105-197 (271)
365 KOG3807 Predicted membrane pro 66.8 50 0.0011 24.5 8.9 20 74-93 284-303 (556)
366 PF09435 DUF2015: Fungal prote 66.7 28 0.00061 21.6 5.1 19 46-64 101-121 (128)
367 PRK09857 putative transposase; 66.2 45 0.00098 23.8 8.7 60 68-128 209-268 (292)
368 KOG1920 IkappaB kinase complex 66.0 89 0.0019 27.1 9.8 87 27-125 932-1024(1265)
369 KOG0991 Replication factor C, 65.8 44 0.00096 23.5 10.8 100 6-109 170-281 (333)
370 TIGR01228 hutU urocanate hydra 65.0 7.5 0.00016 29.8 2.8 59 8-79 207-269 (545)
371 PF09670 Cas_Cas02710: CRISPR- 64.4 56 0.0012 24.2 7.4 51 7-58 143-197 (379)
372 KOG4567 GTPase-activating prot 64.3 53 0.0012 23.9 7.4 42 51-92 264-305 (370)
373 PRK05414 urocanate hydratase; 64.1 7.7 0.00017 29.8 2.7 64 8-84 216-284 (556)
374 KOG1464 COP9 signalosome, subu 64.0 52 0.0011 23.7 9.9 136 1-136 71-227 (440)
375 PF08631 SPO22: Meiosis protei 63.1 50 0.0011 23.2 14.1 87 11-100 103-192 (278)
376 PF09868 DUF2095: Uncharacteri 62.8 32 0.0007 20.9 5.5 36 70-106 66-101 (128)
377 KOG1941 Acetylcholine receptor 62.5 64 0.0014 24.2 7.2 121 4-125 131-271 (518)
378 smart00028 TPR Tetratricopepti 62.2 11 0.00023 15.2 3.8 25 68-92 4-28 (34)
379 PHA02875 ankyrin repeat protei 62.1 25 0.00055 25.9 5.2 12 36-47 38-49 (413)
380 KOG2223 Uncharacterized conser 62.1 70 0.0015 24.5 9.8 59 16-77 460-518 (586)
381 PRK14956 DNA polymerase III su 61.5 74 0.0016 24.6 8.7 34 67-100 250-283 (484)
382 KOG2396 HAT (Half-A-TPR) repea 61.5 76 0.0017 24.8 10.6 79 47-127 88-167 (568)
383 PF05944 Phage_term_smal: Phag 61.4 29 0.00063 21.6 4.6 34 63-97 47-80 (132)
384 PF07443 HARP: HepA-related pr 60.4 3.4 7.3E-05 21.5 0.3 33 9-41 6-38 (55)
385 cd08790 DED_DEDD Death Effecto 60.2 21 0.00045 21.0 3.5 59 41-101 35-93 (97)
386 KOG3807 Predicted membrane pro 60.2 33 0.00072 25.3 5.2 69 7-76 287-359 (556)
387 KOG1920 IkappaB kinase complex 60.1 49 0.0011 28.5 6.6 115 6-129 862-994 (1265)
388 PF12926 MOZART2: Mitotic-spin 59.7 32 0.00069 19.8 7.9 62 29-92 9-70 (88)
389 PRK09462 fur ferric uptake reg 59.1 42 0.00091 21.1 6.9 61 20-81 7-68 (148)
390 cd00280 TRFH Telomeric Repeat 58.7 52 0.0011 22.0 7.6 66 46-114 85-157 (200)
391 KOG1585 Protein required for f 58.7 62 0.0014 22.9 10.2 27 30-56 91-117 (308)
392 COG5108 RPO41 Mitochondrial DN 58.7 64 0.0014 26.3 6.8 93 35-127 33-130 (1117)
393 PF10345 Cohesin_load: Cohesin 58.5 91 0.002 24.7 10.7 125 4-129 109-254 (608)
394 TIGR03581 EF_0839 conserved hy 58.3 58 0.0012 22.4 6.4 82 46-127 137-235 (236)
395 COG2178 Predicted RNA-binding 57.5 56 0.0012 22.0 6.0 53 7-59 41-98 (204)
396 COG4003 Uncharacterized protei 57.1 35 0.00076 19.5 5.1 26 70-95 36-61 (98)
397 PF07575 Nucleopor_Nup85: Nup8 56.9 40 0.00088 26.4 5.7 63 28-92 403-465 (566)
398 KOG0890 Protein kinase of the 56.6 1.5E+02 0.0033 27.9 9.1 110 5-124 1393-1507(2382)
399 PF09090 MIF4G_like_2: MIF4G l 56.2 65 0.0014 22.4 10.8 115 27-142 8-134 (253)
400 PF01475 FUR: Ferric uptake re 54.9 13 0.00028 22.3 2.2 42 3-44 15-56 (120)
401 PRK14958 DNA polymerase III su 54.4 1E+02 0.0022 24.0 8.0 63 8-71 211-286 (509)
402 KOG1130 Predicted G-alpha GTPa 54.4 14 0.0003 28.0 2.6 48 40-88 27-78 (639)
403 PF11817 Foie-gras_1: Foie gra 53.9 70 0.0015 22.0 8.7 57 35-91 183-244 (247)
404 smart00544 MA3 Domain in DAP-5 53.8 44 0.00096 19.6 10.9 61 34-96 6-68 (113)
405 KOG4567 GTPase-activating prot 53.2 87 0.0019 22.9 7.4 44 85-128 263-306 (370)
406 COG5210 GTPase-activating prot 52.7 67 0.0014 24.8 6.1 48 49-96 361-408 (496)
407 PF14840 DNA_pol3_delt_C: Proc 52.4 16 0.00034 22.5 2.3 29 42-70 9-37 (125)
408 PF02840 Prp18: Prp18 domain; 52.2 58 0.0012 20.7 4.8 41 87-127 46-86 (144)
409 PF04910 Tcf25: Transcriptiona 52.1 94 0.002 22.9 9.6 78 2-80 110-194 (360)
410 smart00164 TBC Domain in Tre-2 52.0 64 0.0014 21.0 5.8 82 10-95 108-197 (199)
411 PF03745 DUF309: Domain of unk 51.9 36 0.00078 18.1 5.5 46 42-87 11-61 (62)
412 KOG4507 Uncharacterized conser 51.5 1.1E+02 0.0024 24.7 6.9 82 44-126 621-702 (886)
413 PF08870 DUF1832: Domain of un 50.7 55 0.0012 19.8 4.8 89 12-114 6-96 (113)
414 COG5159 RPN6 26S proteasome re 49.8 89 0.0019 22.7 5.8 27 6-32 14-40 (421)
415 TIGR03362 VI_chp_7 type VI sec 49.6 41 0.00089 24.2 4.3 58 37-94 220-279 (301)
416 PF05664 DUF810: Protein of un 49.3 1.4E+02 0.0031 24.3 8.2 68 25-92 212-290 (677)
417 PF05261 Tra_M: TraM protein, 48.9 63 0.0014 20.0 5.1 67 3-74 5-72 (127)
418 KOG2041 WD40 repeat protein [G 48.1 1.6E+02 0.0035 24.4 9.4 106 26-141 848-966 (1189)
419 COG5210 GTPase-activating prot 47.9 88 0.0019 24.1 6.1 83 46-128 319-405 (496)
420 PF12862 Apc5: Anaphase-promot 47.6 53 0.0011 18.7 6.3 19 40-58 51-69 (94)
421 KOG0275 Conserved WD40 repeat- 47.6 1.1E+02 0.0024 22.5 7.0 43 78-124 53-98 (508)
422 PF02840 Prp18: Prp18 domain; 47.5 56 0.0012 20.8 4.2 42 51-92 45-86 (144)
423 PF07575 Nucleopor_Nup85: Nup8 47.3 17 0.00037 28.4 2.3 58 2-61 412-469 (566)
424 KOG1147 Glutamyl-tRNA syntheta 47.2 68 0.0015 25.3 5.3 72 52-131 255-334 (712)
425 KOG2471 TPR repeat-containing 47.2 59 0.0013 25.4 4.9 115 5-121 250-393 (696)
426 PF14649 Spatacsin_C: Spatacsi 46.2 1.1E+02 0.0024 22.0 6.9 91 15-111 5-99 (296)
427 KOG1114 Tripeptidyl peptidase 46.0 1.8E+02 0.0038 25.0 7.5 85 33-117 1177-1284(1304)
428 KOG1464 COP9 signalosome, subu 45.4 1.1E+02 0.0025 22.0 10.3 121 7-129 39-174 (440)
429 KOG1166 Mitotic checkpoint ser 45.0 2E+02 0.0043 24.6 8.1 62 42-103 90-152 (974)
430 COG5159 RPN6 26S proteasome re 44.8 1.2E+02 0.0026 22.1 9.2 44 41-84 14-64 (421)
431 KOG2422 Uncharacterized conser 44.8 93 0.002 24.8 5.7 70 72-141 349-420 (665)
432 PRK14962 DNA polymerase III su 44.6 1.4E+02 0.003 23.0 6.7 48 31-79 245-292 (472)
433 TIGR03581 EF_0839 conserved hy 44.6 1E+02 0.0022 21.2 5.8 83 10-92 136-235 (236)
434 KOG0276 Vesicle coat complex C 44.0 1.7E+02 0.0038 23.7 7.3 73 4-91 675-747 (794)
435 TIGR02561 HrpB1_HrpK type III 43.9 87 0.0019 20.2 9.3 50 42-95 22-74 (153)
436 KOG1586 Protein required for f 43.6 1.1E+02 0.0025 21.5 9.8 19 111-129 165-183 (288)
437 cd08780 Death_TRADD Death Doma 43.4 66 0.0014 18.6 4.6 52 34-88 36-88 (90)
438 KOG0624 dsRNA-activated protei 43.4 1.4E+02 0.003 22.4 12.5 93 4-100 164-256 (504)
439 PF10963 DUF2765: Protein of u 43.1 47 0.001 18.9 3.1 33 26-58 12-44 (83)
440 PF09797 NatB_MDM20: N-acetylt 43.0 1.2E+02 0.0026 22.2 6.1 71 33-104 183-256 (365)
441 smart00638 LPD_N Lipoprotein N 42.9 1.6E+02 0.0035 23.0 11.7 144 1-144 346-504 (574)
442 PF04762 IKI3: IKI3 family; I 42.8 2.1E+02 0.0046 24.3 9.9 124 2-129 701-843 (928)
443 KOG2297 Predicted translation 42.7 81 0.0018 23.1 4.8 16 67-82 323-338 (412)
444 PF04124 Dor1: Dor1-like famil 42.3 73 0.0016 23.2 4.8 23 70-92 111-133 (338)
445 KOG4642 Chaperone-dependent E3 42.1 1.2E+02 0.0027 21.4 11.1 117 5-125 20-142 (284)
446 PF15469 Sec5: Exocyst complex 42.1 96 0.0021 20.2 7.3 44 9-58 71-114 (182)
447 PF01175 Urocanase: Urocanase; 42.0 8.8 0.00019 29.5 0.1 66 8-86 206-276 (546)
448 PF14669 Asp_Glu_race_2: Putat 41.9 1.1E+02 0.0023 20.8 5.0 57 34-90 136-206 (233)
449 COG0320 LipA Lipoate synthase 41.7 29 0.00062 24.7 2.5 48 45-96 195-242 (306)
450 PF04910 Tcf25: Transcriptiona 41.5 1.4E+02 0.0031 22.0 13.1 100 29-128 39-167 (360)
451 PF02259 FAT: FAT domain; Int 41.3 1.3E+02 0.0028 21.4 7.5 65 64-128 145-212 (352)
452 COG3898 Uncharacterized membra 41.1 1.6E+02 0.0035 22.5 11.2 125 3-135 271-398 (531)
453 PRK11639 zinc uptake transcrip 40.5 1E+02 0.0022 20.0 6.5 64 54-118 15-78 (169)
454 KOG0481 DNA replication licens 40.5 61 0.0013 25.6 4.2 16 100-115 683-698 (729)
455 smart00804 TAP_C C-terminal do 40.4 46 0.001 17.8 2.7 22 43-64 38-60 (63)
456 PRK14962 DNA polymerase III su 40.4 1.7E+02 0.0037 22.6 11.2 48 66-114 245-292 (472)
457 KOG1586 Protein required for f 40.2 1.3E+02 0.0028 21.2 8.2 69 45-113 129-209 (288)
458 KOG1498 26S proteasome regulat 39.7 1.7E+02 0.0036 22.2 7.3 85 4-95 140-242 (439)
459 COG2405 Predicted nucleic acid 39.6 92 0.002 19.8 4.2 41 68-109 113-153 (157)
460 PF11768 DUF3312: Protein of u 39.5 1.8E+02 0.0038 23.1 6.4 95 36-131 414-509 (545)
461 KOG2297 Predicted translation 38.7 1.2E+02 0.0026 22.2 5.2 14 102-115 323-336 (412)
462 PF09797 NatB_MDM20: N-acetylt 38.6 1.6E+02 0.0034 21.6 6.8 61 10-71 198-258 (365)
463 KOG4414 COP9 signalosome, subu 38.2 1E+02 0.0022 19.8 4.3 29 63-91 37-65 (197)
464 KOG2066 Vacuolar assembly/sort 38.1 2.4E+02 0.0051 23.5 7.4 52 38-91 364-418 (846)
465 PF12793 SgrR_N: Sugar transpo 38.0 93 0.002 18.8 5.1 60 63-124 17-94 (115)
466 COG2812 DnaX DNA polymerase II 37.9 1.8E+02 0.0039 22.9 6.4 61 6-67 209-282 (515)
467 PF00244 14-3-3: 14-3-3 protei 37.9 1.1E+02 0.0024 21.0 4.9 77 1-77 7-84 (236)
468 PF04097 Nic96: Nup93/Nic96; 37.8 2.1E+02 0.0046 22.9 8.6 92 35-131 263-358 (613)
469 COG4259 Uncharacterized protei 37.6 92 0.002 18.7 5.6 54 46-103 53-108 (121)
470 KOG2659 LisH motif-containing 37.6 1.4E+02 0.003 20.7 10.9 99 26-126 22-129 (228)
471 PF11123 DNA_Packaging_2: DNA 37.3 77 0.0017 17.7 3.5 34 10-44 12-45 (82)
472 cd08315 Death_TRAILR_DR4_DR5 D 37.2 87 0.0019 18.2 5.7 70 21-96 26-95 (96)
473 PRK09462 fur ferric uptake reg 37.1 1.1E+02 0.0023 19.2 6.5 63 54-117 6-69 (148)
474 PF04124 Dor1: Dor1-like famil 37.0 59 0.0013 23.7 3.6 24 35-58 111-134 (338)
475 PF04348 LppC: LppC putative l 36.5 12 0.00025 29.2 0.0 82 3-84 32-117 (536)
476 COG2040 MHT1 Homocysteine/sele 36.5 1.1E+02 0.0023 22.1 4.6 66 55-124 20-86 (300)
477 KOG2063 Vacuolar assembly/sort 36.5 2.7E+02 0.0058 23.6 8.0 38 75-112 601-638 (877)
478 PF14649 Spatacsin_C: Spatacsi 36.3 1.6E+02 0.0036 21.2 7.0 117 5-129 33-155 (296)
479 PF09868 DUF2095: Uncharacteri 36.2 1E+02 0.0022 18.8 5.8 27 35-61 66-92 (128)
480 PRK13342 recombination factor 36.2 1.9E+02 0.004 21.7 11.9 46 69-114 231-279 (413)
481 TIGR02710 CRISPR-associated pr 35.8 1.9E+02 0.0041 21.7 7.0 51 39-89 139-195 (380)
482 PRK11906 transcriptional regul 35.6 2.1E+02 0.0045 22.1 14.7 113 10-125 273-397 (458)
483 KOG1585 Protein required for f 35.4 1.6E+02 0.0036 20.9 10.1 77 46-124 74-154 (308)
484 PF00531 Death: Death domain; 35.4 78 0.0017 17.2 3.4 41 46-88 40-80 (83)
485 PHA02875 ankyrin repeat protei 35.0 1.9E+02 0.004 21.4 6.2 35 20-54 53-89 (413)
486 KOG2058 Ypt/Rab GTPase activat 34.8 2.1E+02 0.0045 22.0 6.3 42 21-62 308-349 (436)
487 KOG4234 TPR repeat-containing 34.6 1.6E+02 0.0034 20.4 9.0 89 38-129 103-197 (271)
488 PF08311 Mad3_BUB1_I: Mad3/BUB 34.5 1.1E+02 0.0024 18.7 8.9 43 83-125 81-124 (126)
489 COG3294 HD supefamily hydrolas 34.5 32 0.0007 23.7 1.8 21 47-67 67-87 (269)
490 PF04090 RNA_pol_I_TF: RNA pol 34.4 1.5E+02 0.0032 20.1 7.4 29 31-59 42-70 (199)
491 TIGR01529 argR_whole arginine 34.4 85 0.0018 19.9 3.7 37 37-73 7-43 (146)
492 KOG0292 Vesicle coat complex C 34.3 3E+02 0.0065 23.6 7.4 48 5-58 653-700 (1202)
493 KOG4507 Uncharacterized conser 34.3 2.5E+02 0.0055 22.8 9.1 86 8-94 620-705 (886)
494 KOG1308 Hsp70-interacting prot 34.1 95 0.0021 23.0 4.1 116 7-127 126-242 (377)
495 PF06552 TOM20_plant: Plant sp 34.1 1.4E+02 0.0031 19.9 9.5 99 11-112 7-125 (186)
496 PF14744 WASH-7_mid: WASH comp 34.1 1.4E+02 0.0029 22.2 4.9 30 45-74 281-310 (350)
497 TIGR01503 MthylAspMut_E methyl 34.0 1.4E+02 0.003 23.1 5.1 45 80-127 69-113 (480)
498 cd08304 DD_superfamily The Dea 34.0 82 0.0018 17.0 3.4 32 48-83 34-65 (69)
499 PF14853 Fis1_TPR_C: Fis1 C-te 34.0 71 0.0015 16.3 4.8 20 74-93 10-29 (53)
500 PRK13270 treF trehalase; Provi 33.9 2.4E+02 0.0052 22.4 6.9 57 72-129 181-252 (549)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=3.6e-28 Score=190.80 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=66.7
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
|++|++.|++++|.++|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
++|.+++++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=4.6e-28 Score=190.24 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=109.2
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
||++|++.|++++|.++|++|.+.|+.||..+|+++|++|++.|++++|.+++++|.+.|+.||..+|+++|.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 46788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|...
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 8888888888888888888888888888888888888888888888753
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=3.6e-27 Score=180.76 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=109.9
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
||++|+++|++++|.++|++|. ++|+.+||++|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|+
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4677888888888888888885 468888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHHHHHhh
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPFMRKFF 142 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~ 142 (144)
+++|.++++.|.+.|+.||..+|++|+++|++.|++++|.++|++|.+ .+..+|+.+...|
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y 401 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAGY 401 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-CCeeeHHHHHHHH
Confidence 888888888888888888888888888888888888888888888764 5566676665544
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=9.7e-27 Score=178.42 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=99.1
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC------------------
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS------------------ 62 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~------------------ 62 (144)
||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++..|.+.|+.
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC
Confidence 46677777777777777777777777777777777777776666666666666666666643
Q ss_pred -------------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 63 -------------PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 63 -------------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+.
T Consensus 376 ~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 5666677777777777777777777777777788888888888888888888888888888888754
Q ss_pred CCCCcHHHHH
Q 045403 130 KDRCAMPFMR 139 (144)
Q Consensus 130 ~~~~~~~~~~ 139 (144)
....|....|
T Consensus 456 ~g~~p~~~~y 465 (697)
T PLN03081 456 HRIKPRAMHY 465 (697)
T ss_pred cCCCCCccch
Confidence 3333333333
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.94 E-value=3.5e-26 Score=178.68 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=120.8
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
||++|+|+|++++|.++|+.+ .||+.+||+||.+|+++|+.++|.++|++|.+.|+.||.+||+++|.+|++.|+
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 478899999999999999887 679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHH
Q 045403 81 YMLAYRTMVDMH-KKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPF 137 (144)
Q Consensus 81 ~~~a~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~ 137 (144)
+++|.++|++|. +.|+.|+..+|++++++|++.|++++|.+++++|+...+...|..
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 999999999999 789999999999999999999999999999999964333333433
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.94 E-value=1.2e-25 Score=175.64 Aligned_cols=137 Identities=19% Similarity=0.232 Sum_probs=118.2
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
||++|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|.+|.+.|+.||..||+++|.+|++.|+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 4778889999999999998885 578889999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHHHHHhh
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPFMRKFF 142 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~ 142 (144)
.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. .+..+|+.+...|
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~ 364 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGY 364 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHH
Confidence 999999999998888889999999999999999999999999998875 5666777666544
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.77 E-value=1.9e-18 Score=89.88 Aligned_cols=50 Identities=32% Similarity=0.674 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 045403 28 YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK 77 (144)
Q Consensus 28 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 77 (144)
||+.+||++|++|++.|++++|.++|++|++.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888764
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.71 E-value=6.9e-17 Score=83.96 Aligned_cols=50 Identities=30% Similarity=0.415 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 045403 63 PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112 (144)
Q Consensus 63 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 112 (144)
||.++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.33 E-value=3e-12 Score=60.79 Aligned_cols=32 Identities=22% Similarity=0.535 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 045403 25 YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKL 56 (144)
Q Consensus 25 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 56 (144)
|++||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555666666666666666666666655555
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.31 E-value=3.7e-12 Score=60.43 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 045403 60 AISPDYNTFHILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 60 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 91 (144)
|+.||.+|||++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.29 E-value=1.5e-10 Score=83.61 Aligned_cols=122 Identities=13% Similarity=0.030 Sum_probs=82.2
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|.+.|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.+..+|...|+.++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 45567777777777777766432 24556667777777777777777777777654322223556777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|...++++.+. .|+...+..+...+.+.|++++|.++++++.+
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777654 35555566677777777777777777776554
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.28 E-value=4.2e-10 Score=81.33 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=71.5
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK 77 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 77 (144)
..++.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHH
Confidence 34556666666666666666655443321 234455556666666666666666665432 1234455556666666
Q ss_pred hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 78 EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.+
T Consensus 227 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 227 QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666665432212234455666666666666666666666554
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.2e-10 Score=83.58 Aligned_cols=125 Identities=17% Similarity=0.210 Sum_probs=105.1
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
||.+.||--..++|.+++++-.......+..+||.+|.+-.-... -++..+|.+..+.||..|||+++.+..+.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 578889999999999999999988888999999999987654332 6788999999999999999999999999997
Q ss_pred HHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHhhhc
Q 045403 81 YML----AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSE-ALCLQHVKDIA 129 (144)
Q Consensus 81 ~~~----a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~l~~~m~~~ 129 (144)
++. +.+++.+|++.|+.|.-.+|-.+|..+++.++..+ |..++..+..+
T Consensus 289 F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 765 56678889999999999999999999998887654 55666655544
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.11 E-value=1.2e-08 Score=79.95 Aligned_cols=124 Identities=13% Similarity=0.052 Sum_probs=76.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.++++.+.+.. +.+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 34556666667777666665542 3356667777777777777777777777666542 234555666666666677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+|..+++++.+.. +.+..++..+...+.+.|++++|.++++.+...
T Consensus 653 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 653 KAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777766666432 233555666666666666666666666666543
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=3.7e-09 Score=76.06 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 27 KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
+-+..+|.+||.+.++-...+.|.++|++-.+...+.+..+||.+|.+.+-..+ .+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 447789999999999999999999999999998899999999999998766555 7899999998899999999999
Q ss_pred HHHHhccCChHH----HHHHHHHhhhcCC
Q 045403 107 IFHLGKMRAHSE----ALCLQHVKDIAKD 131 (144)
Q Consensus 107 ~~~~~~~g~~~~----a~~l~~~m~~~~~ 131 (144)
+++..+.|+++. |.+++.+|++-..
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGV 308 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGV 308 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCC
Confidence 999999998765 5667777775433
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.06 E-value=1.8e-08 Score=78.82 Aligned_cols=121 Identities=15% Similarity=0.041 Sum_probs=64.9
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
+.+.|++++|.++++.+.+..+ ++...+..+...+...|++++|...|+.+.+. .|+..++..+..++.+.|+.++|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 3444445555555544444332 24444555555555555555555555555443 23334455555555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
...++++.+.. +.+...+..+...|.+.|+.++|..+++++.+.
T Consensus 756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 55555555432 334556666666666666666666666666543
No 17
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.03 E-value=6.7e-10 Score=52.72 Aligned_cols=33 Identities=24% Similarity=0.619 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPD 64 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 64 (144)
+||++|++|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 18
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=99.00 E-value=8.7e-10 Score=52.13 Aligned_cols=33 Identities=21% Similarity=0.502 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISP 63 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 63 (144)
.+||++|++|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567777777777777777777777777777776
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.93 E-value=3.8e-07 Score=60.58 Aligned_cols=121 Identities=12% Similarity=-0.014 Sum_probs=53.0
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHHhCcHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-SPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a 84 (144)
.+.|++++|.+.+++..+.... +...+..+...+...|++++|...+++..+... ..+...+..+..++...|++++|
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444433221 333444444444444444444444444443211 11223344444444555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
...+++..+.. +.+...+..+...+.+.|++++|...+++...
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 155 EKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555544321 11233444455555555555555555555443
No 20
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.92 E-value=3.4e-08 Score=58.75 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHHHCCCCCCHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAI-SPDYNTFHILIKYFRKEK--------MYMLAYRTMVDMHKKGHQPEEE 101 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~ 101 (144)
.|-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++++-.+.. ++-..+.++++|...+++|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3445667777777888888889988888888 788888988888877744 2445678888888888889999
Q ss_pred HHHHHHHHHhc
Q 045403 102 LCSSLIFHLGK 112 (144)
Q Consensus 102 ~~~~l~~~~~~ 112 (144)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99888887665
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.91 E-value=5.2e-07 Score=59.95 Aligned_cols=126 Identities=12% Similarity=0.031 Sum_probs=102.8
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.+.+++..+..+ .+...+..+...+...|++++|.+.+++..+... .+...+..+...+...|+++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYE 116 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHH
Confidence 467788999999999999887643 3678888899999999999999999999887543 45677888889999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 83 LAYRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
+|...+++..+....+ ....+..+..++.+.|++++|.+.+++.....
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999998643222 34567778888999999999999999877543
No 22
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.85 E-value=6e-09 Score=49.33 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCC
Q 045403 66 NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99 (144)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 99 (144)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999887
No 23
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.85 E-value=1.7e-07 Score=55.82 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=67.9
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYD-KYDVVLLNSMLCAYCRTG--------DMESVIHVMRKLDELAISPDYNTFHILI 72 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~~~~li 72 (144)
|.-|...+++.....+|+.++..|+ .|++.+||.++++.+++. ++-+.+.+|++|...+++|+..||++++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4556777999999999999999999 999999999999998765 2557899999999999999999999999
Q ss_pred HHHHH
Q 045403 73 KYFRK 77 (144)
Q Consensus 73 ~~~~~ 77 (144)
....+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 98765
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.84 E-value=2.6e-08 Score=69.26 Aligned_cols=125 Identities=19% Similarity=0.172 Sum_probs=93.1
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKY-DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEK 79 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 79 (144)
+..+.+.|+++++.++++...... .+++...|..+...+.+.|+.++|..++++..+. .| |....+.++..+...|
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCC
Confidence 455677889999999988876432 3567788888888889999999999999888764 45 4677888888888889
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+.+++..+++...+.. ..+...+..+..+|...|+.++|..++++....
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 9888888888887653 445567788888888899999999999987653
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=98.83 E-value=9.1e-07 Score=67.24 Aligned_cols=121 Identities=11% Similarity=-0.052 Sum_probs=85.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY-NTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~ 82 (144)
++...|++++|...|++..+..+. +...|..+...+...|++++|...+++..+. .|+. ..+..+...+...|+++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHH
Confidence 355678888888888888776443 5667777888888888888888888887764 3432 22333344455678888
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 83 LAYRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+|...+++..+.. .| +...+..+-.++...|+.++|...++++..
T Consensus 424 eA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 424 DAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 8888888876543 23 344566677777788888888888887654
No 26
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.79 E-value=7.2e-09 Score=47.80 Aligned_cols=30 Identities=30% Similarity=0.698 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAI 61 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 61 (144)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777664
No 27
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.79 E-value=1.7e-08 Score=47.58 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCC
Q 045403 66 NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98 (144)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 98 (144)
.||+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 588899999999999999999999998888877
No 28
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.76 E-value=6e-07 Score=59.54 Aligned_cols=89 Identities=20% Similarity=0.336 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC----------------cHHHHH
Q 045403 27 KYDVVLLNSMLCAYCR-----TGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK----------------MYMLAY 85 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~ 85 (144)
..+..+|..+++.|.+ +|+.+-....+..|.+-|+.-|..+|+.||+.+-+.. +.+.|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 5688999999999975 4788999999999999999999999999999987633 577899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 045403 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRA 115 (144)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 115 (144)
+++++|...|+.||..++..+++.|++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999998776
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.76 E-value=2.5e-07 Score=64.40 Aligned_cols=119 Identities=24% Similarity=0.175 Sum_probs=49.2
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
...+++++|.++++...+. .++...+..++..+...++++++.+++++..+. ..+.|...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4556666666666554433 234455556666666666666666666665532 2334555566666666666666666
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 85 YRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 85 ~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
...+++..+. .| +....+.++..+...|+.+++..+++....
T Consensus 166 ~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 166 LRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 6666666653 24 344555666666666666666666655544
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.74 E-value=2.4e-06 Score=65.67 Aligned_cols=117 Identities=10% Similarity=-0.137 Sum_probs=50.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
..|++++|...|++.....+. +...|..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|..
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 344555555555544433111 23344444444444455555555554443321 1233444444444444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 87 TMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 87 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
.|++..+.. +.+...+..+..++.+.|++++|...+++.
T Consensus 421 ~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 421 DYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444444321 112233333444444444444444444443
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.68 E-value=3.5e-06 Score=64.79 Aligned_cols=123 Identities=11% Similarity=-0.138 Sum_probs=104.1
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+...|++++|...|++..+..+. +...|..+...+...|++++|...|++..+..- .+...+..+...+.+.|++++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHH
Confidence 466789999999999999876433 678899999999999999999999999887532 356778888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
|...+++..+.. +.+...++.+-.++...|++++|.+.+++...-
T Consensus 452 A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 452 SMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 999999998642 335778889999999999999999999986543
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=7.7e-06 Score=54.30 Aligned_cols=123 Identities=10% Similarity=-0.076 Sum_probs=97.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHHhCc--HHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKY-FRKEKM--YML 83 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~--~~~ 83 (144)
..++.+++...++...+..+. |...|..+...|...|++++|...|++..+..- -|...+..+-.+ +...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 345567777777776665444 899999999999999999999999999887532 366777777776 467777 599
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCC
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDR 132 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~ 132 (144)
|..++++..+.+ +-+...+..+-..+.+.|++++|...++++.+..++
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999764 236678888888999999999999999998765443
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.64 E-value=5.4e-06 Score=64.28 Aligned_cols=122 Identities=13% Similarity=0.027 Sum_probs=64.4
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMES----VIHVMRKLDELAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 79 (144)
++.+.|++++|.+.+++.....+. +...+..+-..+...|++++ |...|++..+.. +.+...+..+...+...|
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC
Confidence 344455556666665555544322 44555555555555555553 555555554431 123445555555666666
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
++++|...+++..+.. +.+...+..+..++.+.|++++|...++++..
T Consensus 299 ~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 299 QNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666655432 11233444555556666666666666665544
No 34
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.64 E-value=9.4e-07 Score=64.61 Aligned_cols=105 Identities=13% Similarity=0.021 Sum_probs=89.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHH
Q 045403 25 YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL--AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEEL 102 (144)
Q Consensus 25 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 102 (144)
+.+.+.....++++.+....+.+++..++.+.+.. ....-..|..++|+.|.+.|..+.+..++++=...|+=||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557778888888888888999999999998865 3333345667999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 103 CSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 103 ~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
++.||+.|.+.|++..|.++..+|...
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999999999999999999999987654
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=98.61 E-value=9e-06 Score=61.89 Aligned_cols=120 Identities=9% Similarity=-0.060 Sum_probs=95.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
..+++++|...+++..+..+. +...+..+-..+...|++++|...|++..+.+ +.+...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 346689999999999887555 77888899899999999999999999998753 2345678888899999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 87 TMVDMHKKGHQPEE-ELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 87 ~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
.+++..+.. |+. ..+..+...+...|++++|...+++.....
T Consensus 394 ~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 394 TINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 999998754 432 233334445667899999999999876543
No 36
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.61 E-value=5.8e-06 Score=64.13 Aligned_cols=81 Identities=6% Similarity=-0.071 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
.|++++|.+.++++....+. +...+..+...+...|++++|...+++..+. .| +...+..+...+...|+.++|..
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHH
Confidence 44444444444444433222 2333444444444444444444444444332 12 22333444444444444444444
Q ss_pred HHHHH
Q 045403 87 TMVDM 91 (144)
Q Consensus 87 ~~~~m 91 (144)
.+.++
T Consensus 166 ~~~~~ 170 (656)
T PRK15174 166 LARTQ 170 (656)
T ss_pred HHHHH
Confidence 44433
No 37
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.59 E-value=1.7e-05 Score=49.05 Aligned_cols=110 Identities=9% Similarity=-0.003 Sum_probs=87.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC
Q 045403 17 LARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 17 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 96 (144)
+++......+. +......+...+...|++++|...++...+.+ +.+...|..+..++...|++++|..++++..+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 45555543222 44556677788889999999999999988754 2477888899999999999999999999987764
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 97 QPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+.+...+..+-.+|...|+.++|...+++..+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445667777888999999999999999987754
No 38
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.58 E-value=7.8e-08 Score=44.20 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 67 TFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
||+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 39
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.57 E-value=1.2e-06 Score=64.12 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=92.9
Q ss_pred hhhhhccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAK--YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 79 (144)
++.+.+..+++.+..++-..... ....-..|..++|+.|.+.|..++++.+++.=...|+=||.+|+|.+++.+.+.|
T Consensus 73 vn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~ 152 (429)
T PF10037_consen 73 VNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKG 152 (429)
T ss_pred HhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcc
Confidence 34556667788888888888765 2222233446999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKM 113 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 113 (144)
++..|.++...|...+.-.+..|+..-+.+|.+.
T Consensus 153 ~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 153 NYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999777767778887777777665
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.57 E-value=1.6e-05 Score=55.90 Aligned_cols=119 Identities=11% Similarity=0.015 Sum_probs=90.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 82 (144)
.+.+.|++++|...|++..+..+. +...|+.+-..+...|++++|...|++..+. .| +..+|..+..++...|+++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHH
Confidence 456789999999999998876544 6788999999999999999999999998763 34 4567788888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+|.+.+++..+. .|+..............++.++|...+++..
T Consensus 150 eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 150 LAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999998864 3443322222223445678999999996644
No 41
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.56 E-value=1.4e-06 Score=57.78 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=67.1
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHhhhCCCCCCHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG----------------DMESVIHVMRKLDELAISPDYNTFH 69 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~g~~p~~~~~~ 69 (144)
.+.|.++-...-+..|.+-|+.-|..+|+.||+.+=+.. +-+-|.+++++|...||-||..|+.
T Consensus 63 ~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~ 142 (228)
T PF06239_consen 63 RRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQ 142 (228)
T ss_pred CCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 356889999999999999999999999999999986522 2367999999999999999999999
Q ss_pred HHHHHHHHhCcH
Q 045403 70 ILIKYFRKEKMY 81 (144)
Q Consensus 70 ~li~~~~~~g~~ 81 (144)
.+++.+++.+..
T Consensus 143 ~ll~iFG~~s~p 154 (228)
T PF06239_consen 143 MLLNIFGRKSHP 154 (228)
T ss_pred HHHHHhccccHH
Confidence 999999998853
No 42
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=2.5e-05 Score=49.19 Aligned_cols=108 Identities=11% Similarity=-0.070 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 16 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
.+|++..+. .|+ .+..+..++...|++++|...|+....... .+...|..+-.++...|++++|...|++..+.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445554442 344 355677888899999999999999876533 477888999999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 96 HQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+.+...+..+-.++.+.|+.++|...+++....
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346778888888899999999999999987654
No 43
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.50 E-value=1.2e-05 Score=58.55 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=99.9
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
|+..+...++++.|..+|+++.+.. |+ ....+.+.+...++-.+|.+++++..+. .+-|......-.+.+...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3556677899999999999999764 44 4456888888889999999999998864 22466677777778999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 81 YMLAYRTMVDMHKKGHQPEE-ELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+.|..+.++..+. .|+. .+|..|..+|.+.|+++.|+-.+..++-
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999874 5654 4999999999999999999999998773
No 44
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.48 E-value=3.5e-05 Score=62.14 Aligned_cols=23 Identities=4% Similarity=0.086 Sum_probs=9.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHH
Q 045403 103 CSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 103 ~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
+..+-.++...|++++|...+++
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 33333333344444444444333
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=1.3e-05 Score=56.19 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=86.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH------HHHHHHHHHHHhCcH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN------TFHILIKYFRKEKMY 81 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~ 81 (144)
+.+.++|..+|-+|.+...+ +..+--+|-+.|-++|..|+|..+.+.+.++ ||.. ..-.|-.-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46778888888888875333 4455557888888888899999988888775 4432 234455667788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
|+|+.+|..+.+.+ ..-...-..|+..|-...++++|.++-+++....+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 88888888887643 23445666788888888888888888887765433
No 46
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=1.5e-05 Score=50.17 Aligned_cols=95 Identities=8% Similarity=-0.117 Sum_probs=81.7
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
++.+.|++++|...|+......+. +...|..+..++...|++++|...|++..+.. +.+..++..+-.++...|+.++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 567889999999999999876444 88999999999999999999999999998753 2578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 045403 84 AYRTMVDMHKKGHQPEEEL 102 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~ 102 (144)
|...++...+. .|+...
T Consensus 111 Ai~~~~~Al~~--~p~~~~ 127 (144)
T PRK15359 111 AREAFQTAIKM--SYADAS 127 (144)
T ss_pred HHHHHHHHHHh--CCCChH
Confidence 99999999874 455433
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.45 E-value=3.4e-07 Score=71.00 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 16 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
.++-.+...|+.|+.+||..+|.-||..|+.+.|- +|.-|+-+..+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667888999999999999999999999999999 9999998888889999999999999999988776
Q ss_pred CCCCHHHHHHHHHHHhccCChHH
Q 045403 96 HQPEEELCSSLIFHLGKMRAHSE 118 (144)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~~~~ 118 (144)
.|...||+.|..+|.++||+.-
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 6888899999999999999875
No 48
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.44 E-value=4.8e-05 Score=51.05 Aligned_cols=125 Identities=10% Similarity=-0.022 Sum_probs=88.5
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 82 (144)
.|-+.|+...|..-++...+..++ +.-+|.++-..|-+.|+.+.|.+-|+...+. .| +-...|..-.-+|..|+++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChH
Confidence 466778888888888887776544 6677888888888888888888888776653 33 4445666666677778888
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 83 LAYRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
+|...|++....-..+ ...+|..+.-|..+.|+.+.|.+.+++-....+
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 8888888777543322 244677777777788888888888887555433
No 49
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.44 E-value=3.1e-05 Score=62.44 Aligned_cols=122 Identities=10% Similarity=0.026 Sum_probs=98.7
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
++.+.|++++|.+.+++..+..+. +...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 567899999999999999876533 3333434444455669999999999998864 5778899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
|...+.+..+.. +-+...+..+-.++.+.|+.++|...+++..+.
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999998753 234567778888999999999999999987754
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.42 E-value=2.2e-05 Score=64.53 Aligned_cols=120 Identities=12% Similarity=0.019 Sum_probs=66.4
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 82 (144)
.+.+.|+.++|.+.|++..+..+. +...+..+...+...|++++|...++...+. .| +..++..+..++...|+.+
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHH
Confidence 344556666666666666554332 4556666666666666666666666655432 22 3344455555566666666
Q ss_pred HHHHHHHHHHHCCC--CC---CHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 83 LAYRTMVDMHKKGH--QP---EEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 83 ~a~~~~~~m~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
+|.++++++....- .| +...+..+...+.+.|+.++|...+++.
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666654321 11 1234444455566666666666666654
No 51
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.39 E-value=3.3e-05 Score=63.54 Aligned_cols=120 Identities=9% Similarity=-0.037 Sum_probs=99.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
+.+...|+.++|.++++. .+++...+..+-..+.+.|++++|...|++..+.. +.+...+..+...+...|+.+
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 356778999999999882 24566778889999999999999999999998753 246788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+|...++...+.. +.+...+..+..++.+.|+.++|.++++++...
T Consensus 655 eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 655 AARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 9999999887542 224556677888899999999999999998764
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.37 E-value=5e-05 Score=60.19 Aligned_cols=123 Identities=14% Similarity=0.044 Sum_probs=87.5
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
.++.|+++.|+..|++..+..+.-....+ .++..+...|+.++|...+++.... -..+......+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 46788999999999988875433212344 7788888888899999988888721 112233333345577778999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
..+++++.+.. +-+...+..+...+.+.++.++|++.++++....
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 99999988653 2235566677888888889999998888887643
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.37 E-value=7.2e-05 Score=59.33 Aligned_cols=128 Identities=13% Similarity=-0.048 Sum_probs=88.9
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCCHHHHHHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA-----ISPDYNTFHILIKYFR 76 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~ 76 (144)
|-++.+.|+..++++.|+.+...+.+....+--.+.++|...+++++|..+|....... ..++......|..++.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34667778888888888888877766556677778888888888888888888875432 1234444567888888
Q ss_pred HhCcHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 77 KEKMYMLAYRTMVDMHKKGH-------------QPEEE-LCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~-------------~~~~~-~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..+++++|..+++++.+... .||-. .+..++..+.-.|++.+|++.++.+...
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888876211 12222 3344566677788888888888887653
No 54
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.36 E-value=2.4e-05 Score=54.93 Aligned_cols=132 Identities=9% Similarity=0.046 Sum_probs=82.8
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYC----RTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK 77 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 77 (144)
+..|.+.++++.|.+.++.|.+. ..|... ..+..++. ....+.+|.-+|+++.+. ..++..+.+.+..+...
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQI--DEDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCC--SCCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHH
Confidence 45677788888888888888764 334332 33333332 233578888888887543 55777778888888888
Q ss_pred hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHhhhcCCCCcHHHH
Q 045403 78 EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAH-SEALCLQHVKDIAKDRCAMPFM 138 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~l~~~m~~~~~~~~~~~~ 138 (144)
.|++++|.+++.+..+.+ +-+..+...++.+....|+- +.+.+.+.+++...+..++..-
T Consensus 214 ~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp CT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred hCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 888888888877765432 22444555666666666666 6677788887766665655443
No 55
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=0.0001 Score=46.36 Aligned_cols=117 Identities=15% Similarity=0.061 Sum_probs=87.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHHhCcHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLN--SMLCAYCRTGDMESVIHVMRKLDELAISPDY--NTFHILIKYFRKEKMYM 82 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~ 82 (144)
..++...+...++.+.+......-.... .+-..+...|++++|...|+...+....|+. ...-.+...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4788999999999998864442122222 3446688899999999999999987633332 24555678888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
+|...++..... ......+...-++|.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999775433 23455677788899999999999999875
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.34 E-value=8.2e-05 Score=54.51 Aligned_cols=121 Identities=12% Similarity=0.001 Sum_probs=92.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHHhCcHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFH--ILIKYFRKEKMYMLAY 85 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~ 85 (144)
.|++++|.+......+.+-. ....|-....+..+.|+++.+...+.++.+. .|+..... .....+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 59999999888876553222 2333444455558899999999999999764 45554333 3356788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCC
Q 045403 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDR 132 (144)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~ 132 (144)
..+++..+.+ +-+......+...|.+.|++++|.+++..+.+....
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 9999998764 335678889999999999999999999999875444
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.33 E-value=0.00012 Score=53.73 Aligned_cols=127 Identities=12% Similarity=-0.052 Sum_probs=95.8
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
..|+++.|.+.+....+.... +...+-..-.+..+.|+++++...+.+..+..-.++...--.....+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 479999999999887665332 2333345567778889999999999998764322222344445777888999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcH
Q 045403 87 TMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAM 135 (144)
Q Consensus 87 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~ 135 (144)
.++.+.+.+ +-+......+...+.+.|++++|.++++++.+.....+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 999999764 335668889999999999999999999999876444443
No 58
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.33 E-value=4.8e-05 Score=42.76 Aligned_cols=93 Identities=17% Similarity=0.096 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 112 (144)
+..+...+...|++++|...+.+..+..- .+...+..+...+...|++++|.+.+++..+.. ..+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 44455566667777777777777655421 233556666677777777777777777766543 2233466666677777
Q ss_pred cCChHHHHHHHHHhh
Q 045403 113 MRAHSEALCLQHVKD 127 (144)
Q Consensus 113 ~g~~~~a~~l~~~m~ 127 (144)
.|+.++|...+.+..
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 777777777776654
No 59
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.32 E-value=9.6e-05 Score=58.46 Aligned_cols=125 Identities=7% Similarity=-0.077 Sum_probs=101.3
Q ss_pred hhhccCCHHHHHHHHHHHHhcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYD-----------KYD---VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFH 69 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 69 (144)
++.+.|++++|.++++.+....+ .|+ ...+..+...+...|++++|.++++++.+.. +-+...+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~ 397 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRI 397 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 56788999999999999886532 123 2355677788899999999999999997652 34677899
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 70 ILIKYFRKEKMYMLAYRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
.+...+...|+.++|.+.+++..+. .|+ ...+..+...+.+.|++++|..+++++.+..+
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999875 355 55666777788999999999999999887443
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.32 E-value=0.0002 Score=50.43 Aligned_cols=122 Identities=11% Similarity=-0.105 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHHHHHhcCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYD-KYD--VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~-~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
.+..+.++.-+.++..... .|+ ...|..+-..+...|+.++|...|++..+... .+...|+.+-..+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 4556778888888775322 222 45688888899999999999999999887532 4678899999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCC
Q 045403 85 YRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDR 132 (144)
Q Consensus 85 ~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~ 132 (144)
...|++..+. .| +...|..+..++...|++++|.+.+++.....+.
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999864 35 4667788888899999999999999997764433
No 61
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=4.1e-05 Score=47.27 Aligned_cols=98 Identities=12% Similarity=0.007 Sum_probs=81.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|+.++|.+.|+.....+.. +...|..+-..+...|++++|..+++...+.+ +.+..++..+-.++...|+.+
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 4567889999999999999876543 78889999999999999999999999987654 356778888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q 045403 83 LAYRTMVDMHKKGHQPEEELCS 104 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~ 104 (144)
+|...++...+. .|+...+.
T Consensus 103 ~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 103 SALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHh--ccccchHH
Confidence 999999999875 35544433
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.31 E-value=6.8e-05 Score=58.46 Aligned_cols=123 Identities=12% Similarity=-0.033 Sum_probs=102.1
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
+..+.|..++|.++++...+..+. +....-.+...+.+.+++++|...+++..+... -+......+-.++...|++++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchHH
Confidence 455789999999999999886444 667788899999999999999999999887522 355567778888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
|..+|++.... ..-+..++..+-.++-+.|+.++|...|+.....
T Consensus 173 A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 173 ADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999973 2334778889999999999999999999986544
No 63
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.31 E-value=3.3e-05 Score=58.63 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=96.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..|...|+++-|+..|++..+..+. -...||.|-.++-..|++.+|++.|+....-.. --..+.+.|-..|.+.|.++
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccch
Confidence 3577889999999999998876444 567899999999999999999999998776421 23456788888999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 83 LAYRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+|..+|..... +-|+ ...++.|...|-+.|++++|...+++..
T Consensus 372 ~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 372 EATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 99988887764 3343 4567888888888999999988888754
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.31 E-value=0.00014 Score=57.55 Aligned_cols=121 Identities=11% Similarity=0.023 Sum_probs=77.5
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
...-.|+.++|+++|++.... -+.+...+..+..++...|++++|..+|++..+.. +.+...+..+...+...|+.++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 445567777777777776642 13345557777777777777777777777765531 1234556666666777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|...+++..+.. +.+.. +..+..++...|+.++|...+++..+
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777776542 22333 66666667777777777777777665
No 65
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=8.1e-05 Score=54.60 Aligned_cols=120 Identities=16% Similarity=0.107 Sum_probs=87.7
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
|+-.++-++|...|+...+.++. ....|+.|.+-|.+.++...|.+-|++.++-. +.|-..|-.+-.+|...++..=|
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHH
Confidence 45567889999999999887555 67889999999999999999999999877642 24666677777777777776666
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 85 YRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 85 ~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+-.|++..+ ++| |+..|.+|-.+|.+.++.++|.+.|.+...
T Consensus 418 LyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 418 LYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 666666654 333 566677777777777777777777766543
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.29 E-value=8.5e-06 Score=57.17 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=90.1
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH--h--C
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK--E--K 79 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~--g 79 (144)
.+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|.+. -+..+...+..++.. . +
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHhCch
Confidence 456789999998887642 36778888999999999999999999999874 233455555555544 2 3
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCC
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDR 132 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~ 132 (144)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+..
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 588999999998754 5678899999999999999999999999996654433
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.25 E-value=0.00015 Score=48.75 Aligned_cols=127 Identities=13% Similarity=-0.054 Sum_probs=105.7
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHhCcH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~ 81 (144)
..|.+.|..+.|.+-|++..+..+. +..+-|..-..+|..|++++|...|++.... ...--..||..+.-|..+.|+.
T Consensus 77 ~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~ 155 (250)
T COG3063 77 HYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQF 155 (250)
T ss_pred HHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc
Confidence 3577889999999999999887555 7788999999999999999999999998876 2333457899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
+.|...+++-.+.. +-...+...+.....+.|++..|...++.......
T Consensus 156 ~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 156 DQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred hhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 99999999998753 22345677788899999999999999998875433
No 68
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0001 Score=50.51 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=87.6
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----hC
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK----EK 79 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 79 (144)
.|++.|++++|.+..+... +....-.=...+.+..+.+-|...+.+|.+- -+..|.+-|..++.+ .+
T Consensus 117 i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 4778889999988877622 2223222233445566788888888888873 566777777777666 34
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHH
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMP 136 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 136 (144)
.+.+|..+|++|-+. ..|+..+-+-...++...|++++|..++++........|.+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 677888888888643 56888888888888888889999999888877655555443
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.24 E-value=4.3e-05 Score=42.98 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=74.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|...+++..+.... +...+..+...+...+++++|.+.+++..+... .+..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHH
Confidence 3567789999999999998876433 457788899999999999999999999877543 44468888899999999999
Q ss_pred HHHHHHHHHHHC
Q 045403 83 LAYRTMVDMHKK 94 (144)
Q Consensus 83 ~a~~~~~~m~~~ 94 (144)
.|...+....+.
T Consensus 86 ~a~~~~~~~~~~ 97 (100)
T cd00189 86 EALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHcc
Confidence 999999887653
No 70
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.23 E-value=3.9e-06 Score=47.86 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDK-YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
.|+++.|+.+++.+.+.... |+...+-.+..++.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35556666666665554331 2333333355556666666666666655 11111 111222333555555666666655
Q ss_pred HHHH
Q 045403 87 TMVD 90 (144)
Q Consensus 87 ~~~~ 90 (144)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.23 E-value=4.9e-06 Score=64.83 Aligned_cols=140 Identities=16% Similarity=0.112 Sum_probs=83.7
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHHHhcCCHHH---HHHHH
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYD------------------------KYDVVLLNSMLCAYCRTGDMES---VIHVM 53 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~------------------------~p~~~~~~~li~~~~~~~~~~~---a~~~~ 53 (144)
||.-||..|+.+.|- +|..|+.... .|...+|+.|.++|.++|+... +++.+
T Consensus 31 LiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli~fe~veqdL 109 (1088)
T KOG4318|consen 31 LIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLILFEVVEQDL 109 (1088)
T ss_pred HHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchHHHHHHHHHH
Confidence 466789999999888 8887765422 2677899999999999998644 33322
Q ss_pred HHh----hhCCC-----------------CCCHHH----------HHHHHHHHHHhC-----------------cHHHHH
Q 045403 54 RKL----DELAI-----------------SPDYNT----------FHILIKYFRKEK-----------------MYMLAY 85 (144)
Q Consensus 54 ~~m----~~~g~-----------------~p~~~~----------~~~li~~~~~~g-----------------~~~~a~ 85 (144)
... ...|+ -||..+ |..+++-..+.. +..-..
T Consensus 110 e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpve 189 (1088)
T KOG4318|consen 110 ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVE 189 (1088)
T ss_pred HHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHH
Confidence 222 22333 122221 222222221110 000011
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHHHHHh
Q 045403 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPFMRKF 141 (144)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~ 141 (144)
++.+..+..--.|++.+|.+.+++-.-+|+++.|..++.+|++..-+..+.++|-+
T Consensus 190 kLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 190 KLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 11111111111588889999999988899999999999999887777776666544
No 72
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00012 Score=49.81 Aligned_cols=122 Identities=16% Similarity=0.037 Sum_probs=97.7
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
....+.|++..|.+.|++.... -++|...||-+--+|.+.|+.++|..-|.+..+--. -+....|.+.-.+...|+.+
T Consensus 108 k~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 108 KNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred HHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHH
Confidence 3456789999999999988754 356899999999999999999999999988877422 34567888888889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
.|..++......+ .-|..+-..+.-.-...|++++|.++..+-.
T Consensus 186 ~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 186 DAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999888654 2356666667777788999999999887644
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=0.00021 Score=50.32 Aligned_cols=128 Identities=14% Similarity=0.155 Sum_probs=96.3
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDV------VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFR 76 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 76 (144)
+.|-+.|.+++|+++.+.+.+ +||. ..---|-.-|...|-+|.|+++|..+.+.|. .-......|+..|.
T Consensus 77 nLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ 152 (389)
T COG2956 77 NLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHH
Confidence 356788999999999999875 3443 2223445557788899999999999988655 55677889999999
Q ss_pred HhCcHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCc
Q 045403 77 KEKMYMLAYRTMVDMHKKGHQPEE----ELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCA 134 (144)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~ 134 (144)
...+|++|.++-.++.+.+-.+.. ..|.-|...+.-..++++|..++++-.+.+..|.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv 214 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV 214 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce
Confidence 999999999999999887655442 2355566666677888888888888666555554
No 74
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.20 E-value=0.00011 Score=53.95 Aligned_cols=124 Identities=14% Similarity=0.056 Sum_probs=72.4
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH---HHhCcH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYF---RKEKMY 81 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~ 81 (144)
+.+.|+++.|.+.++.+.+..+. +......+...+.+.|++++|.+++..+.+.++.++...-..-..++ ...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777777766443 55566677777777777777777777777665532222111111111 112222
Q ss_pred HHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 82 MLAYRTMVDMHKKG---HQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 82 ~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+.....+..+.+.. .+.+...+..+...+.+.|+.++|.+++++..+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 22222333333221 1126677788888889999999999999987653
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.19 E-value=0.00019 Score=48.58 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=78.8
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCH-HHHHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDK-YD-VVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS-PDY-NTFHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~~~li~~~~~~ 78 (144)
..+.+.|++++|...|++.....+. |. ...+..+..++...|++++|...+++..+..-. |.. .++..+-.++...
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence 3566788888888888887765332 11 246677788888888888888888888764221 111 1344444444443
Q ss_pred --------CcHHHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 79 --------KMYMLAYRTMVDMHKKGHQPEEE-LC-----------------SSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 79 --------g~~~~a~~~~~~m~~~~~~~~~~-~~-----------------~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
|+.+.|.+.+++..+.. |+.. .+ ..+...+.+.|+.++|...+++....
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 121 IDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 66777888887776542 2211 11 13445677778888888888776654
No 76
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.19 E-value=0.00021 Score=52.42 Aligned_cols=117 Identities=17% Similarity=0.122 Sum_probs=93.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
.++.+.|+.++|.+++++..+. +||... .++.+....++.+++.+..+...+... -|.....++-..+...++++
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHH
Confidence 4677889999999999988874 444422 234444566899999999988876522 34556778888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
+|.+.|+...+. .|+..++..+..++-+.|+.++|.+++++-
T Consensus 346 ~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 346 EASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999874 699999999999999999999999999874
No 77
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=0.00033 Score=41.92 Aligned_cols=96 Identities=13% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRKLDELAI--SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG--HQPEEELCSSLIF 108 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~ 108 (144)
+-.....+.+.|++++|.+.|..+.+..- ......+..+..++.+.|+++.|...++...... .......+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666666654311 0112344455666666666666666666665421 1111334555555
Q ss_pred HHhccCChHHHHHHHHHhhh
Q 045403 109 HLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~~~m~~ 128 (144)
++.+.|+.++|.+.++++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 56666666666666666554
No 78
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.13 E-value=5.5e-06 Score=47.22 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 045403 43 TGDMESVIHVMRKLDELAI-SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALC 121 (144)
Q Consensus 43 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 121 (144)
.|+++.|..+++++.+..- .|+...+-.+..++.+.|++++|..++++ .+.+. .+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5889999999999987633 22455666689999999999999999988 32221 122344456888999999999999
Q ss_pred HHHH
Q 045403 122 LQHV 125 (144)
Q Consensus 122 l~~~ 125 (144)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=0.00029 Score=42.18 Aligned_cols=93 Identities=16% Similarity=0.066 Sum_probs=74.3
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDK--YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS--PDYNTFHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~ 78 (144)
..+.+.|++++|.+.|+++...... .....+..+..++.+.|++++|...|+...+..-. .....+..+..++...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 89 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL 89 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh
Confidence 3567889999999999999875332 12456777999999999999999999998864211 2245678888889999
Q ss_pred CcHHHHHHHHHHHHHCC
Q 045403 79 KMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~ 95 (144)
|+.++|...+++..+..
T Consensus 90 ~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 90 GDKEKAKATLQQVIKRY 106 (119)
T ss_pred CChHHHHHHHHHHHHHC
Confidence 99999999999998763
No 80
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.00036 Score=51.38 Aligned_cols=119 Identities=15% Similarity=0.045 Sum_probs=99.0
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHhCcHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD-YNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 83 (144)
+...|+.++|...++.+.+.-+. |+.-+......+.+.++..+|.+.++++... .|+ ...+-.+-.++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 45678999999999998877444 8888888999999999999999999999874 566 5667777888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
|..++++.... .+-|...|..|-.+|.+.|+..++..-..+.-
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999865 35688899999999999998877766655543
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.10 E-value=0.0005 Score=46.53 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=66.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhc--------CCHHHHHHHHHHhhhCCCCCCH-HHHH---
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDV--VLLNSMLCAYCRT--------GDMESVIHVMRKLDELAISPDY-NTFH--- 69 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~-~~~~--- 69 (144)
++.+.|++++|...++++.+..+.... .++..+-.++.+. |++++|...|++..+. .|+. ..+.
T Consensus 79 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~ 156 (235)
T TIGR03302 79 AYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKK 156 (235)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHH
Confidence 455667777777777777654332222 1333344444433 5567777777776654 2322 1111
Q ss_pred --------------HHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCChHHHHHHHHHhhh
Q 045403 70 --------------ILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCS----SLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 70 --------------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+-..+.+.|++++|...+++..+. .|+..-.. .+..++.+.|+.++|.++++.+..
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN--YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2234455667777777777776643 34433334 245556667777777777776654
No 82
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.08 E-value=0.00031 Score=50.80 Aligned_cols=96 Identities=14% Similarity=-0.013 Sum_probs=79.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
...+.|++++|+++|++....... +...|..+-.++...|++++|...+++..+..- .+...|..+-.+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHH
Confidence 456789999999999999987555 778899999999999999999999999987532 366778888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHH
Q 045403 84 AYRTMVDMHKKGHQPEEELC 103 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~ 103 (144)
|...+++..+. .|+....
T Consensus 89 A~~~~~~al~l--~P~~~~~ 106 (356)
T PLN03088 89 AKAALEKGASL--APGDSRF 106 (356)
T ss_pred HHHHHHHHHHh--CCCCHHH
Confidence 99999999875 3443333
No 83
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.06 E-value=4.1e-05 Score=41.58 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=42.8
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILI 72 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 72 (144)
.+.|++++|.++|++..+..+. +...+-.+..++.+.|++++|..+++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 3567778888888877766444 6666667777777888888888887777654 45544444443
No 84
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00037 Score=51.29 Aligned_cols=120 Identities=14% Similarity=-0.013 Sum_probs=102.8
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 83 (144)
|....+...|++-++...+-.+. |-..|-.+..+|...++..=|+-.|++..+ ++| |...|.+|-++|.+.+++++
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHH
Confidence 34456778888888888876444 889999999999999999999999999776 455 89999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|.++|.+....| ..+...+.-|.+.|-+.++..+|-+.++.-.+
T Consensus 451 AiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 451 AIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998765 33667899999999999999999999887544
No 85
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.04 E-value=6.4e-05 Score=59.22 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=101.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
.+..++|+++|.+.....+. |...-|-+--.++..|++.+|.+||...++... -+..+|-.+-++|...|++..|.++
T Consensus 625 kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHH
Confidence 45678999999998876555 888889899999999999999999999988754 4557899999999999999999999
Q ss_pred HHHHHH-CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 88 MVDMHK-KGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 88 ~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
|+...+ ..-.-+..+...|.+++.+.|.+.+|.+....-.
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999874 4445577888899999999999999998887654
No 86
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.02 E-value=0.0013 Score=47.47 Aligned_cols=127 Identities=14% Similarity=0.053 Sum_probs=107.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
.|+|.+|.++...-.+.+-. .+..|..-.++--+.|+.+.+...+.+..+..-.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 69999999999997776655 56778889999999999999999999998864457777788888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHH
Q 045403 88 MVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMP 136 (144)
Q Consensus 88 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 136 (144)
++++.+.+ +.++........+|.+.|++....++...|.+.+...+..
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 99998754 4467788999999999999999999999999865544433
No 87
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=98.02 E-value=0.00022 Score=49.53 Aligned_cols=90 Identities=18% Similarity=0.287 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC----------------cHHHHH
Q 045403 27 KYDVVLLNSMLCAYCRT-----GDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK----------------MYMLAY 85 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~a~ 85 (144)
..|-.+|-.++.-|.++ ++.+-...-+..|.+.|+.-|..+|+.||+.+-+.. +-..+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 55778888888888654 577888888899999999999999999999876644 455689
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 045403 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRAH 116 (144)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 116 (144)
+++++|..+|+.||..+--.++.+|.+.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 9999999999999999999999999997764
No 88
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=98.00 E-value=0.00037 Score=42.94 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh---------------hhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH-
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKL---------------DELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH- 92 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m---------------~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~- 92 (144)
|..++.++|-++++.|+.+....+.+.. ..+...|+..+..+++.+|+..|++..|.++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888888888888888888887653 122356899999999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhccCC
Q 045403 93 KKGHQPEEELCSSLIFHLGKMRA 115 (144)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~g~ 115 (144)
..++..+..+|..|+.-....-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 46788889999999987664333
No 89
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.99 E-value=6.7e-05 Score=57.06 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=82.5
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHhCcHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD-YNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 83 (144)
|...+.+++|...|.......+. ..+.+..|-..|.++|..|.|.+.|++..+. .|+ ...|+.|-.++-..|+..+
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHH
Confidence 33445556666666555543222 4466777777777788888888888777663 343 4578888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|.+++++..... .-.....+.|-.+|.+.|.+++|..+|..-.+
T Consensus 339 a~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 339 AVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 888888877642 33455777788888888888888888876443
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.99 E-value=0.00076 Score=48.32 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC-CCCH--HHHHHHHH
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH-QPEE--ELCSSLIF 108 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~--~~~~~l~~ 108 (144)
....+...+...|++++|...+++..+.. +.+...+..+-..+...|++++|...+++.....- .|+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33455567778889999999999988753 24456778888888899999999999888875421 2332 34556778
Q ss_pred HHhccCChHHHHHHHHHhhh
Q 045403 109 HLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+...|+.++|..++++...
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhc
Confidence 88899999999999998753
No 91
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.94 E-value=0.00059 Score=56.05 Aligned_cols=125 Identities=11% Similarity=-0.051 Sum_probs=98.6
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHH
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY---NTFHILIKYFRK 77 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~ 77 (144)
|...|.+.+++++|.++++.|.+.- ......|...+..+.++.+.+.|..++++..+. -|-. .........-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 3456788899999999999998752 257888999999999999999999999887764 2431 223444445567
Q ss_pred hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 78 EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.|+.+++..+|+.....- +-....|+..++.=.++|+.+.++++|++...-
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 899999999999998642 335668999999999999999999999998743
No 92
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00035 Score=49.52 Aligned_cols=122 Identities=11% Similarity=-0.099 Sum_probs=91.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-HHHHHHHHHhCcH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTF-HILIKYFRKEKMY 81 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~ 81 (144)
.+|.+.|-+.+|.+.|++-... .|-+.||-.|-++|.+..+++.|+.++.+-.+. -|-.+|+ .-+...+-..++.
T Consensus 231 kCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhH
Confidence 5788899999999999998876 455667778889999999999999999886653 4655554 4455667778888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
++|.++++...+.. ..+.....++...|.-.++.+.|+..++++.+.
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm 353 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM 353 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh
Confidence 88888888887652 334555555666666677777777777776653
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.91 E-value=0.00084 Score=44.59 Aligned_cols=96 Identities=10% Similarity=0.080 Sum_probs=78.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAY-CRTGD--MESVIHVMRKLDELAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 79 (144)
..|...|++++|...|+...+..+. +...+..+-.++ ...|+ .++|..++++..+..- -+..++..+-..+.+.|
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g 158 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQA 158 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcC
Confidence 3577899999999999999987655 788888888864 67676 5999999999987643 36778888889999999
Q ss_pred cHHHHHHHHHHHHHCCCCCCHH
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEE 101 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~ 101 (144)
++++|...++++.+.. .|+..
T Consensus 159 ~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 159 DYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred CHHHHHHHHHHHHhhC-CCCcc
Confidence 9999999999998754 34443
No 94
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.91 E-value=0.00056 Score=43.54 Aligned_cols=88 Identities=6% Similarity=-0.097 Sum_probs=46.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 045403 37 LCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAH 116 (144)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 116 (144)
-.-+...|++++|..+|+-+..... -+..-|-.|-.++...|++++|...|....... +-|...+-.+-.++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 3344555666666666665554221 233445555555555666666666666655443 12344444455555566666
Q ss_pred HHHHHHHHHh
Q 045403 117 SEALCLQHVK 126 (144)
Q Consensus 117 ~~a~~l~~~m 126 (144)
+.|.+-|+..
T Consensus 120 ~~A~~aF~~A 129 (157)
T PRK15363 120 CYAIKALKAV 129 (157)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.90 E-value=0.00093 Score=50.59 Aligned_cols=125 Identities=16% Similarity=0.051 Sum_probs=101.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..|-..|++++|.+.++...+..+. .+..|.+-.+.+-..|++.+|.+.++..++-.. -|...=+-.++.+.+.|+.+
T Consensus 202 qhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 202 QHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHH
Confidence 3566789999999999998886433 478899999999999999999999999887655 78888899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--------HHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 83 LAYRTMVDMHKKGHQPEEELC--------SSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~--------~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+|.+++.-..+.+..|....+ ..--.+|.+.|++..|++-|..+...
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999876654433222 34567788999999998888876543
No 96
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.00053 Score=47.98 Aligned_cols=125 Identities=11% Similarity=0.103 Sum_probs=94.3
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
|+..-+.+..+.|..+|.+..+.+. ...+....++|..++ .++.+.|..||+...+. ...+...|..-++.+.+.++
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCc
Confidence 4455566779999999999986543 455555555554432 45677899999998875 55678889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 81 YMLAYRTMVDMHKKGHQPE---EELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+.|..+|++.... +.++ ...|...++-=.+.|+++.+.++.+++.+.
T Consensus 86 ~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 86 INNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999864 3222 248999999999999999999999988764
No 97
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0022 Score=44.15 Aligned_cols=130 Identities=9% Similarity=0.045 Sum_probs=94.6
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYC----RTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 79 (144)
.+.|..+++-|.+.+++|.+. . +-.|.+-|-.++. ..+.+..|.-+|++|.+. ..|+.-+-+-...++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 456777889999999999873 3 4455555555554 455789999999999653 6799999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHHH
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELC-SSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPFM 138 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~ 138 (144)
++++|..+++........ ++.+. |.++.+.-...+-+-..+.+.+++...+..++..-
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKH 280 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHH
Confidence 999999999999865433 34444 44444444444555667778888776666665543
No 98
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.0021 Score=41.53 Aligned_cols=99 Identities=6% Similarity=-0.069 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD--YNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
....+..+...+...|++++|...|++..+.+..++ ...+..+...+.+.|++++|...+.+..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677778888888999999999988876543332 3577888888888899999998888887642 2245566667
Q ss_pred HHHHhccCC--------------hHHHHHHHHHhhh
Q 045403 107 IFHLGKMRA--------------HSEALCLQHVKDI 128 (144)
Q Consensus 107 ~~~~~~~g~--------------~~~a~~l~~~m~~ 128 (144)
..++...|+ +++|.+++++...
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 777777776 5778888887664
No 99
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.00021 Score=54.20 Aligned_cols=117 Identities=10% Similarity=-0.012 Sum_probs=56.4
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH---HHHHHHHHHHhCc
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT---FHILIKYFRKEKM 80 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~ 80 (144)
+|+-.++-+.|++.|+...+.... ...+|+.+-.=+.....+|.|...|+.... .|... |--+--.|.+.++
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEK 504 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhheeccch
Confidence 444456677777777766653211 445555555555555555555555544332 22222 2223333445555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
.+.|+..|+...+-+ +.+.+....+...+-+.|+.++|++++++.
T Consensus 505 ~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred hhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 555555554444322 123334444444445555555555555543
No 100
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.0015 Score=47.28 Aligned_cols=91 Identities=7% Similarity=-0.138 Sum_probs=76.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHS 117 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 117 (144)
......|++++|...|.+..+..- -+...|..+..+|.+.|++++|...+++..+.. ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 445678999999999999987533 467788889999999999999999999998753 235667888889999999999
Q ss_pred HHHHHHHHhhhcC
Q 045403 118 EALCLQHVKDIAK 130 (144)
Q Consensus 118 ~a~~l~~~m~~~~ 130 (144)
+|...+++.....
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999877543
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.79 E-value=0.0058 Score=48.30 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=100.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
.|++++|.+++.+..+..+. +...|-+|-..|-+.|+.+++...+-- .....| |...|-.+-+-..+.|.++.|.-
T Consensus 152 rg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~ll--AAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLL--AAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHH--HHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 49999999999999887544 888999999999999999988776644 444444 67889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHH
Q 045403 87 TMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMP 136 (144)
Q Consensus 87 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 136 (144)
+|.+..+.. +++....---...|-+.|+..+|.+-|.++-...+++.+.
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e 277 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE 277 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH
Confidence 999999864 3444444456778889999999999999987765544443
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.79 E-value=0.0034 Score=44.95 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=84.1
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHhC
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYC----RTGDMESVIHVMRKLDELAISPD-YNTFHILIKYFRKEK 79 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 79 (144)
+...|++++|.+.+++.....+. |...++. ...+. ..+..+.+...+.. .....|+ ......+...+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 45679999999999998876433 4445553 22222 23455556665554 2222343 344456667788999
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
++++|...+++..+.. +.+...+..+-.++...|++++|...+++....
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 9999999999998754 334567778888999999999999999986654
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.0025 Score=43.57 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=92.9
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
-.|+-+....+..+.... .+.|...-+..+....+.|++.+|...+++...- -++|..+|+.+-.+|-+.|+.++|..
T Consensus 78 ~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHH
Confidence 345555555554443322 2346677788999999999999999999998653 34899999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 87 TMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 87 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
-|.+..+.- .-+....+.+.-.+.-.|+.+.|..++..-...
T Consensus 156 ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 156 AYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999988642 234556777888888899999999999876643
No 104
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.78 E-value=0.00057 Score=42.98 Aligned_cols=86 Identities=13% Similarity=0.099 Sum_probs=67.5
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDV--VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
..+...|++++|...|++.......|+. ...-.+-..+...|++++|...++...... .....+...-+.+...|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCC
Confidence 4567789999999999999987644433 234456777889999999999997754332 445667788888999999
Q ss_pred HHHHHHHHHH
Q 045403 81 YMLAYRTMVD 90 (144)
Q Consensus 81 ~~~a~~~~~~ 90 (144)
.++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 105
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.76 E-value=0.0025 Score=41.04 Aligned_cols=113 Identities=6% Similarity=-0.059 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 11 FEEAKQLARDFE-AKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP--DYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 11 ~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
+..+...+..+. ..+-.-....|..+...+...|++++|...|.+.......| ...++..+-..+...|+.++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444442 33333346677888888889999999999999987653222 235788899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHh-------ccCChHHHHHHHH
Q 045403 88 MVDMHKKGHQPEEELCSSLIFHLG-------KMRAHSEALCLQH 124 (144)
Q Consensus 88 ~~~m~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~l~~ 124 (144)
+++..+.. +....++..+...+. +.|++++|...++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 99988642 223455666666777 7778775544444
No 106
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.74 E-value=0.00058 Score=47.78 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELA-ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
.+|..+|+..-+.+..+.|..+|.+.++.+ +..+.....+++. |...++.+.|.++|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578999999999999999999999998653 3344444444443 33457778899999999875 45677889999999
Q ss_pred HhccCChHHHHHHHHHhhhc
Q 045403 110 LGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 110 ~~~~g~~~~a~~l~~~m~~~ 129 (144)
+.+.|+.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 99999999999999998754
No 107
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.74 E-value=0.0026 Score=45.89 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=96.4
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-------HHHHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN-------TFHILIKYFRK 77 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~li~~~~~ 77 (144)
....|+.+.|..-.+++...++. ++..-.....+|.+.|++.++.+++..|.+.|+--|+. +|..+++-...
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888888877655 77788999999999999999999999999998865554 57777777777
Q ss_pred hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 78 EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+..+.-...+++.-.. .+-++..-.+++.-+.++|+.++|.++.++-..
T Consensus 242 ~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred cccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77777777777777543 345666777788888999999999998887543
No 108
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.74 E-value=0.00021 Score=38.40 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=30.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
.+.+.|++++|.+.|++..+..+. +...+..+-.++...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666655433 555566666666666666666666665543
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.71 E-value=0.0017 Score=41.74 Aligned_cols=87 Identities=9% Similarity=-0.094 Sum_probs=64.5
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH-----
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKY--DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFR----- 76 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----- 76 (144)
.+...|++++|...|+........| ...+|..+-..+...|++++|...+.+..+.. +....++..+...+.
T Consensus 44 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 44 SAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQ 122 (168)
T ss_pred HHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHH
Confidence 4556799999999999997654333 23588999999999999999999999987642 233455667776777
Q ss_pred --HhCcHHHHHHHHHHH
Q 045403 77 --KEKMYMLAYRTMVDM 91 (144)
Q Consensus 77 --~~g~~~~a~~~~~~m 91 (144)
..|++++|...+++-
T Consensus 123 ~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 123 AIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHcccHHHHHHHHHHH
Confidence 677777665555543
No 110
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.70 E-value=0.0023 Score=48.28 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=95.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC--CC-CHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAK---YDKY----DVVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AI--SP-DYNTF 68 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~--~p-~~~~~ 68 (144)
..|+..+.+++|..+++...+. -+.+ -..+++.|-..|...|++++|+++|.+..+. +- .+ .....
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 4577889999999998876543 1222 2478999999999999999999999987643 11 22 24567
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH----CC-CCCC-HHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHK----KG-HQPE-EELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+.+-..|.+.+..++|.++|.+-.. -| -.|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8888889999999988888877652 22 1233 5589999999999999999999998765
No 111
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.68 E-value=0.00025 Score=44.56 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK-----KGHQPEEELCS 104 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~ 104 (144)
..+...++..+...|++++|..+.+....... .|...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 35667788888899999999999999987533 6888999999999999999999999998863 58888877654
No 112
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.0054 Score=45.70 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=65.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
..|++..|.++|+.... .+|+...|++.|+.=.+.+..+.|..||++.+- +.|++.+|---.+--.++|....+..
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 35788888888888766 589999999999999999999999999998876 45888888777777677777666666
Q ss_pred HHHHHH
Q 045403 87 TMVDMH 92 (144)
Q Consensus 87 ~~~~m~ 92 (144)
+++...
T Consensus 229 VyerAi 234 (677)
T KOG1915|consen 229 VYERAI 234 (677)
T ss_pred HHHHHH
Confidence 665554
No 113
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.0032 Score=48.10 Aligned_cols=119 Identities=10% Similarity=-0.023 Sum_probs=61.8
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
|.|.++++.|.-.|+...+-.+. +.+....+...+-+.|+.|+|+++|++...-.- -|..+--.....+...++.++|
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHHH
Confidence 44555666666666655554333 444445555555555666666666665543222 2233333333444445556666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 85 YRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+..++++++ +.|+ ...|-.+.+.|-+.|..+.|..-|.-+.
T Consensus 577 l~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 577 LQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 666666654 2343 3345555566666666666665555443
No 114
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.65 E-value=0.00097 Score=41.85 Aligned_cols=105 Identities=22% Similarity=0.087 Sum_probs=72.1
Q ss_pred ccCCHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 7 RGGCFEEAKQLARDFEAK--YD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
..|+.+.+.+.+++.... |. -|+... .........-+..+.- .+...++..+...|++++
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~~-------~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELYL-------DALERLAEALLEAGDYEE 80 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHHH-------HHHHHHHHHHHHTT-HHH
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccCHHH
Confidence 456777777777777653 22 122111 2233444444444432 567778888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
|..+........ +.+...|..+|.+|...|+..+|.++|+++...
T Consensus 81 a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 81 ALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999998753 458889999999999999999999999987654
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.61 E-value=0.0052 Score=39.19 Aligned_cols=87 Identities=7% Similarity=-0.060 Sum_probs=75.0
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
+...|++++|.++|+......+. +..-|-.|--++-..|++++|.+.|.....-.. -|...+-.+-.++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 56789999999999999886544 666677788888888999999999999988664 6778888999999999999999
Q ss_pred HHHHHHHHH
Q 045403 85 YRTMVDMHK 93 (144)
Q Consensus 85 ~~~~~~m~~ 93 (144)
.+.|+....
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 999998874
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.59 E-value=0.00063 Score=36.77 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 045403 43 TGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 43 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 93 (144)
.|++++|..+|++..+..- -|...+-.+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555443311 1444444455555555555555555555443
No 117
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.58 E-value=0.0032 Score=47.56 Aligned_cols=126 Identities=19% Similarity=0.154 Sum_probs=89.2
Q ss_pred hhhhhccCCHHHHHHHHHHHHhc-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCC----HHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAK-----YD-KYDVVL-LNSMLCAYCRTGDMESVIHVMRKLDEL---AISPD----YNT 67 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~ 67 (144)
-..|...|++++|+.++++.... |. .|.+.+ -+.+-..|...+++++|..+|+++..- ...++ ..+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 35788999999999999997654 21 233333 334666788899999999999998742 22222 235
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHH-----CCC-CCCHH-HHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHK-----KGH-QPEEE-LCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~~~~~-~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
++.|-..|.+.|++++|..++++..+ .|. .|... .++.+...+...+++++|..++++..
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 67777789999999998888777652 122 22333 35567777889999999999998644
No 118
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.58 E-value=0.0034 Score=49.55 Aligned_cols=121 Identities=12% Similarity=0.006 Sum_probs=95.6
Q ss_pred hccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKY--DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
......+.+..+........ +.-++..|--+-++|...|++.+|..+|..+...-.--+...|--+-.+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 33444444444555555554 5556788999999999999999999999999987555678899999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 84 AYRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|...++..... .|+ ...--.|-..+.+.|+.++|.+.++++..
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 99999999864 344 33445677788899999999999998753
No 119
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.56 E-value=0.0015 Score=47.79 Aligned_cols=88 Identities=18% Similarity=0.084 Sum_probs=73.0
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHhCc
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY-NTFHILIKYFRKEKM 80 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~ 80 (144)
...+...++-.+|.+++++..+..+ .+....+.-.+.+.+.++++.|..+.++..+. .|+. .+|..|..+|...|+
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCC
Confidence 3455567788999999999886533 37777777788899999999999999999874 5655 499999999999999
Q ss_pred HHHHHHHHHHHH
Q 045403 81 YMLAYRTMVDMH 92 (144)
Q Consensus 81 ~~~a~~~~~~m~ 92 (144)
++.|+..++.+-
T Consensus 284 ~e~ALlaLNs~P 295 (395)
T PF09295_consen 284 FENALLALNSCP 295 (395)
T ss_pred HHHHHHHHhcCc
Confidence 999999888774
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.56 E-value=0.0044 Score=48.68 Aligned_cols=102 Identities=7% Similarity=-0.069 Sum_probs=84.3
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
..++.+.+++++|...+++.....+. +....+.+-.++.+.|++++|..+|++....+ .-+..++..+-.++-+.|+.
T Consensus 127 a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 127 LRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 35788999999999999999987655 77888888899999999999999999999732 23478999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
++|...|.+..+.- .+....|+-.
T Consensus 205 ~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 205 WRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHHHhh-CcchHHHHHH
Confidence 99999999998642 3444555443
No 121
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.56 E-value=0.0024 Score=39.33 Aligned_cols=66 Identities=12% Similarity=0.024 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 64 DYNTFHILIKYFRKEKMYMLAYRTMVDMHK---------------KGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|+.++..+|.++++.|+++....+++..=. ....|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 578899999999999999999888876521 13568999999999999999999999999999876
Q ss_pred c
Q 045403 129 A 129 (144)
Q Consensus 129 ~ 129 (144)
.
T Consensus 81 ~ 81 (126)
T PF12921_consen 81 K 81 (126)
T ss_pred H
Confidence 5
No 122
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0034 Score=47.32 Aligned_cols=121 Identities=13% Similarity=0.057 Sum_probs=87.7
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCC----CHHHHHHHHHHHHHh
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL--AISP----DYNTFHILIKYFRKE 78 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~ 78 (144)
|.+-++++.|.++|.+.....+. |+...+-+--.....+.+.+|...|+.-... .+.+ -..+++.+-.+|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 44567788888888887765433 7777777777777778888888888776521 1111 234577777888888
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 79 KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+..++|...+++-... .+-+..++.++--.|...|+++.|.+.|..-.
T Consensus 469 ~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 8888888888887754 24577788888888888888888888887643
No 123
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.0095 Score=38.49 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=61.6
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
.+.+.|++++|...|++..+....++ ...+..+...+.+.|++++|...+.+..+... -+...+..+...+...|+.
T Consensus 44 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 44 SAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCh
Confidence 45678999999999999887544433 46788999999999999999999999887422 2456677777778777765
Q ss_pred HHHH
Q 045403 82 MLAY 85 (144)
Q Consensus 82 ~~a~ 85 (144)
..+.
T Consensus 123 ~~a~ 126 (172)
T PRK02603 123 AEEA 126 (172)
T ss_pred HhHh
Confidence 4433
No 124
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.0021 Score=45.84 Aligned_cols=101 Identities=12% Similarity=0.008 Sum_probs=71.4
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
-|...|+...|.++-.+.+ .|+..-|-..|++++..++|++.+.+-.. +-+++-|-.++.+|.+.|...+
T Consensus 186 ~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 4556677777777766664 46888888888888888888887776432 1233778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
|..++..+ .+..-+..|.+.|++.+|.+...
T Consensus 256 A~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 256 ASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 88777762 22445666777777777765543
No 125
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.48 E-value=0.0018 Score=45.23 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=67.3
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------------HHHHHHHHHHhhhCCCCCCHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD----------------MESVIHVMRKLDELAISPDYNTFHI 70 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------------~~~a~~~~~~m~~~g~~p~~~~~~~ 70 (144)
+.+.++--..-++.|.+.|+..|..+|+.||+.+-+-.- -+-+.+++++|...|+-||..+--.
T Consensus 84 ~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~ 163 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDI 163 (406)
T ss_pred ccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHH
Confidence 346667777778889999999999999999999865432 2568999999999999999999999
Q ss_pred HHHHHHHhCcH-HHHHHHHHHH
Q 045403 71 LIKYFRKEKMY-MLAYRTMVDM 91 (144)
Q Consensus 71 li~~~~~~g~~-~~a~~~~~~m 91 (144)
+++++++.+-. .+..++..-|
T Consensus 164 lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 164 LVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHhccccccHHHHHHHHHhh
Confidence 99999998853 2344444444
No 126
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.0027 Score=45.19 Aligned_cols=122 Identities=12% Similarity=-0.014 Sum_probs=91.5
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHHhCcHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN--TFHILIKYFRKEKMYM 82 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~ 82 (144)
|.=.++++-|.+.|+.+.+.|+. +...|+.+--+|.-.+++|-++.-|++..+....|+.. .|-.+-....-.||+.
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n 412 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN 412 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH
Confidence 34457788888888888888887 77778877777777788888888888877654445443 4666666677788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.|.+.|.-...++ .-+...++.|.-.-.+.|++++|..++..-.+
T Consensus 413 lA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 413 LAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 8888888776543 23566788777777899999999999987653
No 127
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.014 Score=43.50 Aligned_cols=116 Identities=14% Similarity=0.063 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTM 88 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 88 (144)
.+..+|++++.+.... ++-|....+-|-..|-+.|+-.+|...+-+--.. .+-|..|..=|-..|....=++++..+|
T Consensus 572 ed~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred hCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444332 3345566666666666666666666655442221 2234444444555555555566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH-hccCChHHHHHHHHHhhh
Q 045403 89 VDMHKKGHQPEEELCSSLIFHL-GKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 89 ~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~l~~~m~~ 128 (144)
++.. -++|+..-|..++..| .+.|++++|+++++....
T Consensus 650 ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 650 EKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6553 3689999999877654 468999999999998764
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.003 Score=50.26 Aligned_cols=128 Identities=11% Similarity=0.081 Sum_probs=97.3
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
+++..|++++|..+|.+....... +..+|-.+-++|...|++..|.++|+.-.+. .-+-+....+.|-+++-+.|++.
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 567899999999999999887553 5667889999999999999999999876654 44567788899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHh------------------ccCChHHHHHHHHHhhhcCCC
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLG------------------KMRAHSEALCLQHVKDIAKDR 132 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~------------------~~g~~~~a~~l~~~m~~~~~~ 132 (144)
+|.+...........-+...||..+-..- ..+..+.|.++|..|....++
T Consensus 734 eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 734 EAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99887776665433334556665443321 123477788888888766444
No 129
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.021 Score=43.50 Aligned_cols=117 Identities=9% Similarity=-0.128 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHhC
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG--------DMESVIHVMRKLDEL-AISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g 79 (144)
++.++|.++|++..+..+. +...|..+..++.... ++..+.+...+.... ....+...|.++--.....|
T Consensus 356 ~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 3478999999999986444 4455555444443221 123344444433332 23345677887766666789
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
++++|...+++....+ |+...|..+-+++...|+.++|.+.+++-..
T Consensus 435 ~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 435 KTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999765 6888999999999999999999999998654
No 130
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.41 E-value=0.0017 Score=34.76 Aligned_cols=53 Identities=17% Similarity=-0.031 Sum_probs=23.6
Q ss_pred HHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 74 YFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
.+...|++++|...|++..+.. +-+...+..+-.++.+.|++++|...+++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555554332 1133344444444445555555555554443
No 131
>PLN02789 farnesyltranstransferase
Probab=97.40 E-value=0.024 Score=40.58 Aligned_cols=123 Identities=11% Similarity=-0.020 Sum_probs=90.4
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH-
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY- 81 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~- 81 (144)
++.+.++.++|+.+.++..+..+. +..+|+..-.++...| .++++++.++++.+... -+..+|+..-..+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchh
Confidence 455677888999998888876444 5567777766666766 67999999999887543 3445677665556666653
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 82 -MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 82 -~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+++..+.+.+.+.. .-+.+.|+...-++.+.|+++++++.++++.+.
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 66788888887653 346778888888888889999999999998764
No 132
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0064 Score=42.90 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=81.7
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------------CCCHHH----
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-------------SPDYNT---- 67 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~~---- 67 (144)
..+.|+.+.|.+-|+...+-|--.+...||+.+..|. .++++.|.+...+++++|+ .||+..
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 4688999999999999887555457788998887765 5678999999999999987 233322
Q ss_pred ----HHHHHHH-------HHHhCcHHHHHHHHHHHH-HC--------------------------------CCCC-CHHH
Q 045403 68 ----FHILIKY-------FRKEKMYMLAYRTMVDMH-KK--------------------------------GHQP-EEEL 102 (144)
Q Consensus 68 ----~~~li~~-------~~~~g~~~~a~~~~~~m~-~~--------------------------------~~~~-~~~~ 102 (144)
-+.++.+ +-+.|+.+.|.+.+-+|- +. ++.| ...|
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHH
Confidence 2333333 445677777777666663 11 1222 4556
Q ss_pred HHHHHHHHhccCChHHHHHHHHH
Q 045403 103 CSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 103 ~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
|..++-.||+..-++-|-+++-+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 66667777777667666666654
No 133
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0067 Score=42.43 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=77.3
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 83 (144)
..+++++++|+..|.+..+..+. |.+-|..---+|.+-|+++.|.+=...-.+- .| -..+|..|-.+|.-.|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 45778899999999998887544 8888899999999999998888777666552 23 34578888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
|...|+.-.. +.|+..+|-.=++.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 9988877764 57777777654443
No 134
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.34 E-value=0.012 Score=35.87 Aligned_cols=101 Identities=15% Similarity=-0.046 Sum_probs=54.9
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---H-HHHHHHHHHHHHh
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD---Y-NTFHILIKYFRKE 78 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~-~~~~~li~~~~~~ 78 (144)
+-..|+.++|+.+|++....|...+ ...+-.+-..+...|++++|..++++..... |+ . .....+--++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHC
Confidence 3445777777777777776665543 2334445555666677777777776665431 32 1 1122223345566
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045403 79 KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLG 111 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 111 (144)
|+.++|...+-.... ++..-|.--|..|.
T Consensus 89 gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 89 GRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred CCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 777777666655432 23334444444443
No 135
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.022 Score=42.62 Aligned_cols=104 Identities=9% Similarity=-0.128 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC-CCCCHHHH
Q 045403 25 YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG-HQPEEELC 103 (144)
Q Consensus 25 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~ 103 (144)
|..|-..+|-..|..=.+-+.+|.+..+|.+..+.+. -|..+|......--..|+.|.|..+|.-..+.. +.-....|
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 3445555555555555555555555555555555322 344555555555555556666655555554321 11223345
Q ss_pred HHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 104 SSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 104 ~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+.|+-=...|.+++|..+++++...
T Consensus 511 kaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 511 KAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 55555555566666666666665543
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.31 E-value=0.012 Score=46.71 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=92.5
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAY--CRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
...+++.+|.+...+..+. .|+ ..|...+.++ .+.|..++|..+++....-+.. |..|..++..+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3568899999999998765 333 3466677775 4678999999999988765553 99999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+..++++..+. .|+......++.+|.+.+++.+-.+.-=+|-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~Ly 137 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLY 137 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999864 5778888889999999998877555444443
No 137
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.30 E-value=0.018 Score=40.10 Aligned_cols=99 Identities=9% Similarity=-0.073 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHhCcHHHHHHHHHHHHHCC--CCCCHHHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY----NTFHILIKYFRKEKMYMLAYRTMVDMHKKG--HQPEEELC 103 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~ 103 (144)
...|+..+..+.+.|++++|...|+.+.+.. |+. ..+--+-..|...|++++|...|+.+.+.- .......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 4567777766677899999999999998752 443 467778888999999999999999998531 11123344
Q ss_pred HHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 104 SSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 104 ~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
-.+..++.+.|+.++|.++++++....
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 445667778999999999999987643
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.28 E-value=0.0047 Score=33.39 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK-MYMLAYRTMVDMH 92 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 92 (144)
..+|..+-..+...|++++|...|.+..+.. +-+...|..+-.++...| ++++|.+.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3455555555666666666666665555432 124445555555555555 4556655555544
No 139
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0078 Score=44.94 Aligned_cols=117 Identities=15% Similarity=0.037 Sum_probs=83.3
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---------HHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD---------YNTFHILIKY 74 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---------~~~~~~li~~ 74 (144)
+..+.+++++++..|++-++. .+.-+.+||-.-..+...++++.|.+.|+...+- .|+ ....-.++-
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~- 512 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV- 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-
Confidence 345677888899999888766 4557788888888888999999999988877642 222 111111111
Q ss_pred HHHhCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 75 FRKEKMYMLAYRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
+.=.+++..|..++.+..+. .| -...|..|-..-.+.|++++|.++|+.-
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11237888888888887654 23 3457888888889999999999999864
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.26 E-value=0.013 Score=47.14 Aligned_cols=124 Identities=12% Similarity=0.045 Sum_probs=84.7
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH------------------HHHhhhCCCC
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHV------------------MRKLDELAIS 62 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~------------------~~~m~~~g~~ 62 (144)
|+..+-..+++++|.++.+...+..+..-..-|-.-+ .+.+.++++.+..+ ++.|.+. .
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~--~ 113 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLY--G 113 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhh--h
Confidence 4667778999999999999776653331112222222 55555555544444 2233221 1
Q ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 63 PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 63 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
-+....-.+..+|-+.|+.+++..+++++.+.. .-+....|-+...|... ++++|.+++.+....
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 122567778888888999999999999999876 45677888898899888 999999988876543
No 141
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.0026 Score=34.83 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=29.9
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
..|.+.+++++|.+.++.+....+. +...|...-.++.+.|++++|...|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455555555555555555554333 445555555555555555555555555554
No 142
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.24 E-value=0.018 Score=35.81 Aligned_cols=107 Identities=13% Similarity=0.064 Sum_probs=76.1
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
+..+.+.+..+.+..+++.+...+. .+...+|.+|..|++.. ..+..+.+.. .++.......++.|.+.+.+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 5667778899999999999888764 68889999999999875 3455555552 13445556678888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CChHHHHHHHHH
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKM-RAHSEALCLQHV 125 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~l~~~ 125 (144)
+++..++.++.. +...+..+.+. ++++.|.+.+.+
T Consensus 86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 888888877731 22233333333 788888887775
No 143
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.23 E-value=0.056 Score=41.22 Aligned_cols=38 Identities=13% Similarity=-0.059 Sum_probs=25.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHHHH
Q 045403 102 LCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPFMR 139 (144)
Q Consensus 102 ~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~ 139 (144)
++..+...|-..|++++|++.+++-.+..+..+..++.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~ 233 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMT 233 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 33456677788889999999888877655554444443
No 144
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.21 E-value=0.018 Score=35.17 Aligned_cols=88 Identities=19% Similarity=0.089 Sum_probs=67.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHh
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAISPD--YNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE----EELCSSLIFHLG 111 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~ 111 (144)
.++-..|+.++|..+|++-...|...+ ...+-.+-..+...|+.++|..++++....- |+ ......+.-++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 456678999999999999999887654 3356667777999999999999999998542 33 233334455777
Q ss_pred ccCChHHHHHHHHHhh
Q 045403 112 KMRAHSEALCLQHVKD 127 (144)
Q Consensus 112 ~~g~~~~a~~l~~~m~ 127 (144)
..|+.++|.+++-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8999999999887643
No 145
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.19 E-value=0.021 Score=39.67 Aligned_cols=89 Identities=9% Similarity=-0.059 Sum_probs=69.7
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHHhCcH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVIHVMRKLDELAI--SPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~ 81 (144)
.+.|++++|...|+.+.+.-+... ...+--+..+|...|++++|...|..+.+.-- ......+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 457999999999999998644321 35667888889999999999999999986421 12344555566778899999
Q ss_pred HHHHHHHHHHHHC
Q 045403 82 MLAYRTMVDMHKK 94 (144)
Q Consensus 82 ~~a~~~~~~m~~~ 94 (144)
++|...+++..+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999865
No 146
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.17 E-value=0.0026 Score=35.39 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCC---CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDEL--AIS---PD-YNTFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
.+|+.+-..|...|++++|.+.|++..+. ... |+ ..++..+-.++...|++++|..++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777776532 111 22 3456666677777777777777776654
No 147
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=97.12 E-value=0.015 Score=41.18 Aligned_cols=123 Identities=11% Similarity=0.100 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHHhC--
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCR--TG----DMESVIHVMRKLDELA---ISPDYNTFHILIKYFRKEK-- 79 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g-- 79 (144)
+++...+++.|++.|...+..+|-+..-.... .. ...++..+|+.|++.. ..++-.++.+++..-...-
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~ 157 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHH
Confidence 66778899999999999888877764444333 22 3568999999999875 3578888888877722211
Q ss_pred cHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCC---hHHHHHHHHHhhhcCCCC
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEE-LCSSLIFHLGKMRA---HSEALCLQHVKDIAKDRC 133 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~---~~~a~~l~~~m~~~~~~~ 133 (144)
-.+++..+++.+.+.|+..+.. -+.+-+-++..... +.++.++++.+++.+.+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki 215 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI 215 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc
Confidence 2466788899998888877544 33333444343222 457888899998764443
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.11 E-value=0.0065 Score=32.81 Aligned_cols=64 Identities=13% Similarity=-0.033 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHhhh
Q 045403 64 DYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR-AHSEALCLQHVKDI 128 (144)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~l~~~m~~ 128 (144)
+..+|..+-..+...|++++|...|++..+.. +-+...|..+-.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45788889999999999999999999999764 335668888999999999 79999999988654
No 149
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.06 E-value=0.012 Score=45.69 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=100.5
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHhCcHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD-YNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a 84 (144)
.++++++++.+.|+.-....+ --..+|=.+-.+..+.+++..|.+.|..-.. ..|| ...||.+-.+|.+.|+-.+|
T Consensus 496 ~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHH
Confidence 346889999999988665433 3667888888999999999999999998765 3564 45799999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
...+++..+-+ .-+..+|...+-...+.|.++.|.+.+.++...+
T Consensus 573 ~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 573 FRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999998876 5566678888888899999999999999987653
No 150
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.04 E-value=0.032 Score=41.47 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 28 YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY----NTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 28 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
.+...|+.+..+|...|++++|...|++-.+. .||. .+|..+-.+|...|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46688888999999999999999999887663 4653 35888999999999999998888888764
No 151
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.02 E-value=0.057 Score=45.22 Aligned_cols=115 Identities=16% Similarity=0.073 Sum_probs=47.8
Q ss_pred hccCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKY-----DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
.+.++.++|.+++++.... +.+ -...|.++++.-...|.-+...++|++..+. .-.-..|..|...|.+.+.
T Consensus 1469 LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek 1545 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEK 1545 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhc
Confidence 3445555555555555432 110 1134444444444444444444444444432 0112234444444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
.++|.++++.|.+. +.-...+|......+.+..+-+.|..++.
T Consensus 1546 ~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1546 NDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred chhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 44444444444432 11223334444444444444344444333
No 152
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.96 E-value=0.034 Score=44.92 Aligned_cols=125 Identities=10% Similarity=0.043 Sum_probs=69.8
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH---HH--
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYF---RK-- 77 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~-- 77 (144)
.+|-+.|+.++|...|++..+..+. |+.+-|.+-..|... ++++|..++.+....-+ |..-|+.+.... +.
T Consensus 124 ~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 124 EAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcC
Confidence 4566678888888888888776633 777777777777777 77777777776655311 111122221111 11
Q ss_pred hCcHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 78 EKMYMLAYRTMVDMHKK-GHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
..+.+.-.++.+.+... |..--..++-.+-..|-+.++++++..+++.+.+..+
T Consensus 200 ~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 200 SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 11222223333333321 3333344555566667777777777777777665433
No 153
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.92 E-value=0.081 Score=41.11 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=80.0
Q ss_pred hccCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 6 CRGGCFEEAKQLARDFEA-KYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
-+.|++..-...|+.... .-+......|...|.....++-++-+..+|.+..+ .++..-+--|..+++.+++++|
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHH
Confidence 456666667777766543 33344456677777777777777777777777765 3334466667777777777776
Q ss_pred HHHHHHHHHC----------------------------------------CC--CCCHH--HHHHHHHHHhccCChHHHH
Q 045403 85 YRTMVDMHKK----------------------------------------GH--QPEEE--LCSSLIFHLGKMRAHSEAL 120 (144)
Q Consensus 85 ~~~~~~m~~~----------------------------------------~~--~~~~~--~~~~l~~~~~~~g~~~~a~ 120 (144)
.+-+...... |+ -+|.. .|++|.+-|.+.|++++|.
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 6555554321 21 24543 5889999999999999999
Q ss_pred HHHHHhhh
Q 045403 121 CLQHVKDI 128 (144)
Q Consensus 121 ~l~~~m~~ 128 (144)
+++++-..
T Consensus 269 Dvyeeai~ 276 (835)
T KOG2047|consen 269 DVYEEAIQ 276 (835)
T ss_pred HHHHHHHH
Confidence 99998543
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=96.89 E-value=0.02 Score=36.77 Aligned_cols=85 Identities=9% Similarity=-0.046 Sum_probs=38.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
+.|++++|..+|+-+...++- +..=|..|-.++-..+++++|...|.....-+. -|...+--.-.++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 445555555555555443222 222233333333344555555555554433222 222223333445555555555555
Q ss_pred HHHHHHH
Q 045403 87 TMVDMHK 93 (144)
Q Consensus 87 ~~~~m~~ 93 (144)
.|+....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555543
No 155
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.021 Score=43.27 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 10 CFEEAKQLARDFE-AKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 10 ~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
.+.+..++|-++- ..+..+|..+++.|--.|...|++++|.+.|+.... ++| |...||-|-..+....+.++|...
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 3455666666665 345457888899999999999999999999999877 456 677899999999999999999999
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 88 MVDMHKKGHQPEEE-LCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 88 ~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
|.+..+. +|+-+ ..--|--.|...|.+.+|.+.|-...
T Consensus 487 Y~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 487 YNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999874 56522 33334556699999999988776533
No 156
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.025 Score=42.88 Aligned_cols=104 Identities=15% Similarity=0.003 Sum_probs=83.5
Q ss_pred ccCCHHHHHHHHHHHHhc--CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 7 RGGCFEEAKQLARDFEAK--YD----KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~--~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
+.+.+.+|...|+.-... .+ ....-+++.|..++.+.+.+++|...|+.-... .+-|..+++++--.|...|+
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcC
Confidence 457788999999887621 11 125567999999999999999999999998764 23688999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKM 113 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 113 (144)
++.|.+.|.+-. .+.|+..+-+.+++.+...
T Consensus 505 ld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 505 LDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 999999998876 4689988888888766543
No 157
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.041 Score=42.04 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=81.7
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH--HhC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFR--KEK 79 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g 79 (144)
++-+.+.|++++|.+...+....++. |...+-.=+-+..+.+.+++|+.+.+.-.. ...+.+-+ +=++|| +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHcc
Confidence 35567889999999999999987644 556666666677888899999866554321 11111111 345554 578
Q ss_pred cHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 80 MYMLAYRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+.|+|...++ |+.++ ..+-..-...+.+.|++++|.++|+.+...
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 8999998888 33343 335555667788999999999999998543
No 158
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.79 E-value=0.027 Score=30.67 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=37.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
..|.+.+++++|.++++++.+.+- .+...|...-.++...|++++|...+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 355667777777777777766422 35555666667777777777777777777654
No 159
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.77 E-value=0.016 Score=45.05 Aligned_cols=129 Identities=12% Similarity=-0.010 Sum_probs=95.1
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC---------------
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-----AI--------------- 61 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~--------------- 61 (144)
|-+|+..|+-.+|..+..+..+ -+||...|..+.+......-+++|.++.+..-.+ |.
T Consensus 431 i~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHL 508 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHH
Confidence 5678888999999998888776 4789999999999887777777777777654322 11
Q ss_pred -------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCC
Q 045403 62 -------SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRC 133 (144)
Q Consensus 62 -------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~ 133 (144)
+.-..+|-.+-.+..+.+++..+.+.|...... .|| ...||.+-.+|.+.|+..+|...+.+-.+.+ ..
T Consensus 509 e~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~ 585 (777)
T KOG1128|consen 509 ERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQ 585 (777)
T ss_pred HHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CC
Confidence 012223444455556677888888888888753 464 5689999999999999999999999876654 33
Q ss_pred cH
Q 045403 134 AM 135 (144)
Q Consensus 134 ~~ 135 (144)
+|
T Consensus 586 ~w 587 (777)
T KOG1128|consen 586 HW 587 (777)
T ss_pred CC
Confidence 44
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.76 E-value=0.093 Score=36.06 Aligned_cols=71 Identities=10% Similarity=0.163 Sum_probs=47.1
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLL--NSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYF 75 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 75 (144)
+.+.|++++|.+.|++....-+.+..... =.+..++.+.+++++|...+++..+....-...-+.-.+.+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 34578999999999999876444322221 245677788899999999999988764333333444444443
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.74 E-value=0.046 Score=38.29 Aligned_cols=134 Identities=11% Similarity=0.012 Sum_probs=79.9
Q ss_pred hhhcc-CCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-----CCCHH-HHHHH
Q 045403 4 AFCRG-GCFEEAKQLARDFEAK----YDK-YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-----SPDYN-TFHIL 71 (144)
Q Consensus 4 ~~~~~-g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~-~~~~l 71 (144)
.|-+. |++++|++.|++.... +-+ .-..++..+...+.+.|++++|.++|++....-. +++.. .|-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34555 7889999988886543 211 1235566777888999999999999998876432 22222 23334
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHHH
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHKK--GHQPE--EELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPFM 138 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~ 138 (144)
+-++...||.-.|...+++.... ++..+ ......|+.+ .+.||.+.-.+.+.+-..-.+..+|...
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A-~~~~D~e~f~~av~~~d~~~~ld~w~~~ 272 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA-YEEGDVEAFTEAVAEYDSISRLDNWKTK 272 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH-HHTT-CCCHHHHCHHHTTSS---HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-HHhCCHHHHHHHHHHHcccCccHHHHHH
Confidence 44667788999999999998743 33333 3345556777 4566766666666665554666666544
No 162
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.062 Score=40.41 Aligned_cols=119 Identities=12% Similarity=0.009 Sum_probs=68.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 82 (144)
.|....+.++....|+...+..+. |.-+|----......+++++|..=|++-++ +.| +...|-.+--+.-+.+.++
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHH
Confidence 345555566666666665554332 223333333333334456666666666554 223 2334444444445566777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
++...|++.++. ++.-+..|+.....+...++++.|.+-|+.-
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 777777777654 4445667777777788888888888777753
No 163
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.70 E-value=0.077 Score=41.38 Aligned_cols=128 Identities=13% Similarity=0.033 Sum_probs=67.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
+.|.+.+|..+++.-+..++. +...|-..|++=.+.|..+.|..+..+..+. ++-+...|..-|....+.++--.+.
T Consensus 731 k~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~- 807 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI- 807 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH-
Confidence 456777888888877766555 7778888888888888888887777665443 2223333444443333333311111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc--CCCCcHHHHHHh
Q 045403 87 TMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA--KDRCAMPFMRKF 141 (144)
Q Consensus 87 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~~~~~~ 141 (144)
+.|++ +.-|.++.-++...|-....+++|++.|.+-..- ..+..|-.+|++
T Consensus 808 --DALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 808 --DALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred --HHHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 11111 2234444444444444444555555555543322 234444444443
No 164
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.028 Score=40.71 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHHhCcHHHHHHH
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFH-ILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~ 87 (144)
.++++++..+...+..-..-|.+.+| +-.+++-.|.+.+|+++|-+...-.+ .|..+|. .+.++|.+++.++.|+.+
T Consensus 373 ~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 45666666666665554444555444 45667778888999999877765444 4555654 455778889999888887
Q ss_pred HHHHHHCCCCCCHHHHH-HHHHHHhccCChHHHHHHHHHhhhc
Q 045403 88 MVDMHKKGHQPEEELCS-SLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 88 ~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+-.+.. ..+..+.- .+..-|.+.+++--|.+.|+.++..
T Consensus 451 ~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 451 MLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 766532 22333332 3455677888888888888877653
No 165
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.68 E-value=0.07 Score=37.40 Aligned_cols=80 Identities=23% Similarity=0.200 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK-----KGHQPEEELCSS 105 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ 105 (144)
.++..++..+...|+++.+...++++..... .|...|..++.+|.+.|+...|...++++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4556677777777888888888888876543 6788888888888888888888888887765 477888777776
Q ss_pred HHHHHh
Q 045403 106 LIFHLG 111 (144)
Q Consensus 106 l~~~~~ 111 (144)
......
T Consensus 233 y~~~~~ 238 (280)
T COG3629 233 YEEILR 238 (280)
T ss_pred HHHHhc
Confidence 666633
No 166
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.67 E-value=0.0089 Score=33.16 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 66 NTFHILIKYFRKEKMYMLAYRTMVDMHKK----GH-QPE-EELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
.+++.+-..|...|++++|...+++..+. |- .|+ ..++..+-.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46888899999999999999999998743 21 122 4567788899999999999999999754
No 167
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.12 Score=35.79 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 045403 43 TGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCL 122 (144)
Q Consensus 43 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 122 (144)
.|++++|.++|+...+.. +-|.+++--=+...--.|+--+|.+-+.+..+. +..|...|.-+-..|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 355666666666665544 234444444444444444444444444444432 445666666666666666666666666
Q ss_pred HHHhh
Q 045403 123 QHVKD 127 (144)
Q Consensus 123 ~~~m~ 127 (144)
++++.
T Consensus 177 lEE~l 181 (289)
T KOG3060|consen 177 LEELL 181 (289)
T ss_pred HHHHH
Confidence 66654
No 168
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.66 E-value=0.074 Score=39.83 Aligned_cols=109 Identities=18% Similarity=0.211 Sum_probs=86.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HHhCcH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYF-RKEKMY 81 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~ 81 (144)
+.|-+.|+-.+|++.+=+--.. .+-+..+..=|-.-|....-++++...|++.. =+.|+.+-|..||..| .+.|++
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccH
Confidence 4566788888888776544332 45688888888888889899999999998854 3679999999999875 458999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRA 115 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 115 (144)
.+|++++++.... ++-|......|+..+...|.
T Consensus 677 qka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 677 QKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999999854 56677788889998888775
No 169
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.65 E-value=0.18 Score=37.78 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=75.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
+.+.+.++.++|.+-++.+....+. ....+-++-.++.+.|++.+|..++++...+ .+-|...|.-|-.+|...|+..
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchH
Confidence 4567889999999999999986333 2677888999999999999999999998765 3468899999999999999999
Q ss_pred HHHHHHHHHHH
Q 045403 83 LAYRTMVDMHK 93 (144)
Q Consensus 83 ~a~~~~~~m~~ 93 (144)
++.....+...
T Consensus 426 ~a~~A~AE~~~ 436 (484)
T COG4783 426 EALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHH
Confidence 98887777764
No 170
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.60 E-value=0.24 Score=38.79 Aligned_cols=112 Identities=13% Similarity=-0.001 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
+|++..|..++.+.-+.... +...|-..++.-.++..+++|..+|.+... ..|+...|.--++.---.+..++|.++
T Consensus 597 agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 34555555555544443322 444455555555555555555555554333 234444444444444444455555555
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHH
Q 045403 88 MVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 88 ~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
+++..+. -|+ ...|-.+-..+-+.++++.|.+-|.
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5444432 222 1233333333444444444444443
No 171
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.043 Score=39.06 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=78.1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCC--CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCC
Q 045403 24 KYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA---ISP--DYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP 98 (144)
Q Consensus 24 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 98 (144)
.|.+....+...+++.-....+++.++..+-+++.+- ..| ..++|--++ ..-+.+++..+...-.+.|+=|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 3566777788888888888888999999998887641 222 233333333 3346678999999999999999
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 99 EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|..+++.+|+.|.+.+++..|.++.-.|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999998887654
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=96.55 E-value=0.06 Score=34.64 Aligned_cols=88 Identities=10% Similarity=-0.069 Sum_probs=68.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCh
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH-QPEEELCSSLIFHLGKMRAH 116 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~ 116 (144)
.-+...|++++|..+|.-+.-.+. -|..-|..|-.++...+++++|...|......+. .|.+.. -.-.+|...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f--~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF--FTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc--hHHHHHHHhCCH
Confidence 345678999999999999987544 4566688888889999999999999988775432 233333 366788999999
Q ss_pred HHHHHHHHHhhh
Q 045403 117 SEALCLQHVKDI 128 (144)
Q Consensus 117 ~~a~~l~~~m~~ 128 (144)
+.|++.|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999997765
No 173
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.52 E-value=0.18 Score=38.53 Aligned_cols=116 Identities=12% Similarity=0.044 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHHHHHHHHH
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYMLAYRTMV 89 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 89 (144)
.+.....++..+..-..--+-+|...|+.--+..-+..|..+|.+.++.+..+ .+...++++..||. ++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44445555555443222234557777777777767777777777777776655 66677777776653 45566777776
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 90 DMHKKGHQPEEELC-SSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 90 ~m~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
-=.+. -+|...| ...++-+...++-..+..+|++....
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 54432 2233333 34666666677777777777776654
No 174
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.36 E-value=0.12 Score=32.30 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
.-.+..++....+|.-|+..++++++.+. -.++....-.+-.+|.+.|+..++-+++.+.-+.|
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33455555555555555555555555432 22444555555555555555555555555555444
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.35 E-value=0.15 Score=35.77 Aligned_cols=123 Identities=17% Similarity=0.094 Sum_probs=76.8
Q ss_pred hccCCHHHHHHHHHHHHhc---CCCCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHhhhC----CCCCC--HHHHHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAK---YDKYD--VVLLNSMLCAYCRT-GDMESVIHVMRKLDEL----AISPD--YNTFHILIK 73 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~---~~~p~--~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~ 73 (144)
.+.+++++|.+.+++.... .-.|+ ..++..+-..|-.. |++++|.+.|++..+. | .+. ..++..+..
T Consensus 85 ~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 85 YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 3445777777777775532 11222 34666777777777 8899999888876542 3 121 234667778
Q ss_pred HHHHhCcHHHHHHHHHHHHHCCC-----CCCHH-HHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 74 YFRKEKMYMLAYRTMVDMHKKGH-----QPEEE-LCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~-~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+.+.|++++|.++|++....-. +.+.. .|-..+-++.-.||...|.+.+++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999999876432 12222 2223344556678999999999987654
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.34 E-value=0.04 Score=39.45 Aligned_cols=88 Identities=13% Similarity=0.059 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL 110 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 110 (144)
.+.+..|.-+...|+...|.++-.+.+ | ||..-|...+++++..++|++..++... +-.+..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 455666777788899888888877764 3 9999999999999999999988776433 22457899999999
Q ss_pred hccCChHHHHHHHHHhhh
Q 045403 111 GKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 111 ~~~g~~~~a~~l~~~m~~ 128 (144)
.+.|...+|..++.++..
T Consensus 248 ~~~~~~~eA~~yI~k~~~ 265 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPD 265 (319)
T ss_pred HHCCCHHHHHHHHHhCCh
Confidence 999999999999988553
No 177
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.27 E-value=0.0017 Score=40.59 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=61.9
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
+|+.+.+.+.++.+.++++...+.+..-+....|.++..|++.+..+++.++++... + .-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 467788889999999999999987777789999999999999988788888887322 2 333455666666666
Q ss_pred HHHHHHHHHHHH
Q 045403 81 YMLAYRTMVDMH 92 (144)
Q Consensus 81 ~~~a~~~~~~m~ 92 (144)
++++.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666666666554
No 178
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.25 E-value=0.36 Score=36.92 Aligned_cols=132 Identities=11% Similarity=0.061 Sum_probs=84.7
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 83 (144)
+-+.|++.+|.-.|+...+..+. +...|--|...-.+.++-..|+.-+.+-.+- .| |....-.|--+|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 45789999999999999887655 7788888888888877777777777766552 34 33344444444444443333
Q ss_pred H-----------------------------------------HHHHHHHH-HCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 045403 84 A-----------------------------------------YRTMVDMH-KKGHQPEEELCSSLIFHLGKMRAHSEALC 121 (144)
Q Consensus 84 a-----------------------------------------~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 121 (144)
| .++|-++. ..+..+|..++..|--.|.-.|++++|.+
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 3 33333333 22334677777777777888888888888
Q ss_pred HHHHhhhcCCCCcHHHHHHh
Q 045403 122 LQHVKDIAKDRCAMPFMRKF 141 (144)
Q Consensus 122 l~~~m~~~~~~~~~~~~~~~ 141 (144)
.|+... ...+....+|+-
T Consensus 452 cf~~AL--~v~Pnd~~lWNR 469 (579)
T KOG1125|consen 452 CFEAAL--QVKPNDYLLWNR 469 (579)
T ss_pred HHHHHH--hcCCchHHHHHH
Confidence 888766 333444444443
No 179
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.20 E-value=0.39 Score=36.76 Aligned_cols=121 Identities=11% Similarity=0.137 Sum_probs=97.0
Q ss_pred hccCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH-hhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVIHVMRK-LDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
-+..-++.|..+|....+.+..+ ++..++++|.-+|.. +.+-|.++|+- |++-| -+..--...++-+...++-..
T Consensus 377 rR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N 453 (656)
T KOG1914|consen 377 RRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNN 453 (656)
T ss_pred HHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchh
Confidence 34455888999999999988876 999999999999864 57889999965 33322 233445677888889999899
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 84 AYRTMVDMHKKGHQPE--EELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+..+|++....++.|| ..+|..+++-=...|++..+.++-+++-..
T Consensus 454 ~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 454 ARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9999999998876665 468999999999999999999998876543
No 180
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.12 E-value=0.48 Score=37.13 Aligned_cols=135 Identities=14% Similarity=0.082 Sum_probs=85.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHH---hCcHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN-TFHILIKYFRK---EKMYM 82 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~---~g~~~ 82 (144)
..|-++....+++.+.+..+.......|- --.+-.+.-++++.++|++=+.-=--|+.. .|++-+.-+.+ ...++
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 35677788888888876555422222221 112345566788888887654432235544 47776666554 23689
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCChHHHHHHHHHhhhcCCCCcHHHHHHhhc
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFH--LGKMRAHSEALCLQHVKDIAKDRCAMPFMRKFFI 143 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~ 143 (144)
.|..+|++..+ |++|...-+--|+.+ =-+.|....|++++++.-..-.+...-.+|++||
T Consensus 568 raRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 568 RARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999998 777653332223222 2247888999999999766566666777787775
No 181
>PLN02789 farnesyltranstransferase
Probab=96.12 E-value=0.31 Score=34.95 Aligned_cols=133 Identities=11% Similarity=0.107 Sum_probs=90.8
Q ss_pred ccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 7 RGG-CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD--MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 7 ~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
+.| ++++++..++++.+..++ +..+|+-.-..+.+.+. .+++.++++++.+... -|..+|+..-..+...|++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHH
Confidence 445 679999999998877665 66678866555555555 3678889988886543 578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCh----HHHHHHHHHhhh-c-CCCCcHHHHHHhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKM---RAH----SEALCLQHVKDI-A-KDRCAMPFMRKFF 142 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~l~~~m~~-~-~~~~~~~~~~~~~ 142 (144)
+.+.++++.+.+. -+...|+.....+.+. |.. ++..+....... . ++..+|.+...+|
T Consensus 161 eL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll 227 (320)
T PLN02789 161 ELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF 227 (320)
T ss_pred HHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 9999999997653 3455666554444443 222 345555544332 2 4556666555444
No 182
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.33 Score=35.63 Aligned_cols=124 Identities=15% Similarity=0.062 Sum_probs=91.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhc-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAK-----YD---------KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTF 68 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~-----~~---------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 68 (144)
+.|.|.|++..|..-|+...+. +. ..-..+++.+.-++.+.+++.+|...-+.-...+- +|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 3678899999999998875432 11 12346788888889999999999999888776533 677777
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChH-HHHHHHHHhhhc
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELC-SSLIFHLGKMRAHS-EALCLQHVKDIA 129 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~g~~~-~a~~l~~~m~~~ 129 (144)
----.++...|+++.|...|+.+.+. .|+...- +.++.+-.+..+.. +..++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788899999999999999999974 5655544 45555555544444 457788877543
No 183
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.07 E-value=0.17 Score=31.57 Aligned_cols=90 Identities=17% Similarity=0.025 Sum_probs=68.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHH---HHHHHHHhC
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AISPDYNTFHI---LIKYFRKEK 79 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~---li~~~~~~g 79 (144)
+.+..|+++.|++.|.+....-+ -....||.--.++--.|+.++|++=+++..+- |-+ ....+.+ ---.|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 46778999999999999877533 37788999999999999999999999888764 332 3333333 333477788
Q ss_pred cHHHHHHHHHHHHHCC
Q 045403 80 MYMLAYRTMVDMHKKG 95 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~ 95 (144)
+-+.|..=|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888777665
No 184
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.2 Score=37.95 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=81.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD-YNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 82 (144)
+.+..|+++.|+.+|.+.....+. |.+.|+.-..+|...|++++|.+=-.+-++ +.|+ ...|+-.-.+..=.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 557889999999999998877555 999999999999999999998876665544 4565 346777777777788999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHL 110 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 110 (144)
+|..-|.+=.+.. +-+...++-+..++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999998877642 23455666677666
No 185
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.02 E-value=0.16 Score=35.71 Aligned_cols=75 Identities=9% Similarity=-0.046 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc----CCCCcHHHHHHhh
Q 045403 67 TFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA----KDRCAMPFMRKFF 142 (144)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~----~~~~~~~~~~~~~ 142 (144)
++..++..+...|+++.+...++++.... +.+...|..+|.+|.+.|+...|...++++.+- -...|.+...++|
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45667888888999999999999998753 568999999999999999999999999998762 2344555544443
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.02 E-value=0.15 Score=35.98 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=68.7
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 045403 40 YCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119 (144)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 119 (144)
+.+.+++.+|+..|.+.++-. +-|.+-|+.--.+|++.|+++.|++-.+...... .-...+|..|=.+|...|++.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 467889999999999988742 2477788899999999999999887766665432 12355888899999999999999
Q ss_pred HHHHHHhh
Q 045403 120 LCLQHVKD 127 (144)
Q Consensus 120 ~~l~~~m~ 127 (144)
.+-|+.-.
T Consensus 169 ~~aykKaL 176 (304)
T KOG0553|consen 169 IEAYKKAL 176 (304)
T ss_pred HHHHHhhh
Confidence 99988644
No 187
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.98 E-value=0.33 Score=39.42 Aligned_cols=125 Identities=12% Similarity=-0.029 Sum_probs=83.2
Q ss_pred hhhccCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--C-CHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYD-----KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AIS--P-DYNTFHIL 71 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~l 71 (144)
++...|++++|...+++...... .+...+.+.+-..+...|++++|...+++.... |.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 34568999999999988764311 112345566677788899999999998876542 221 1 23334455
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHKK--GHQPE--EELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
...+...|++++|...+.+.... ...+. ...+..+...+...|+.++|...+++...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56677789999999988887542 11122 33444456677789999999998887643
No 188
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.97 E-value=0.47 Score=35.92 Aligned_cols=120 Identities=14% Similarity=0.020 Sum_probs=83.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhhhC--CC-CCCHHHHHHHHHHHHHhCcHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSM-LCAYCRTGDMESVIHVMRKLDEL--AI-SPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~--g~-~p~~~~~~~li~~~~~~g~~~ 82 (144)
.....+.|.++++.+.+. -|+...|... -+.+...|++++|.+.|++.... .. ......+--+.-++....+++
T Consensus 245 ~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred cCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 356789999999999875 5666666533 34456679999999999976532 11 123345666677788899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCCh-------HHHHHHHHHhhhc
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIF-HLGKMRAH-------SEALCLQHVKDIA 129 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~l~~~m~~~ 129 (144)
+|...|..+.+.+-. ...+|.-+.. ++...|+. ++|.+++.+.+.-
T Consensus 323 ~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999975422 2334443332 34467777 8899999887654
No 189
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.94 E-value=0.054 Score=42.92 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=59.2
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 85 (144)
.....|.+|+.+++-+...... ..-|.-+-..|+..|+++.|+++|-+- ..++.-|..|++.|+|+.|.
T Consensus 743 i~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 3455666677776666544222 234566667777777777777777553 23556677777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 045403 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQ 123 (144)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 123 (144)
++-.+... -......|-+-..-.-+.|.+.+|.+++
T Consensus 812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 77666531 1222333333333334445554444444
No 190
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.46 Score=36.67 Aligned_cols=123 Identities=11% Similarity=0.040 Sum_probs=86.7
Q ss_pred hhhhhccCCHHHHHHHHH--------HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCCCHHH
Q 045403 2 ISAFCRGGCFEEAKQLAR--------DFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL------AISPDYNT 67 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~ 67 (144)
+......|+++.|.+++. ...+.+..|-++ ..+...+.+.++-+.|-.++.+.... +-..=..+
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 345667899999999999 666655555555 45555666666655566666554432 11112234
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+......-.+.|..++|..+++++.+.+ ++|..+...++.+|++. |.++|..+-..+.-
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 5555555667899999999999999754 57899999999999987 88888888776653
No 191
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.90 E-value=0.13 Score=38.53 Aligned_cols=100 Identities=13% Similarity=0.037 Sum_probs=70.0
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 85 (144)
.+.|+++.|.++.++ .++...|..|-+...+.|+++-|++.|++... |..|+-.|.-.|+.+...
T Consensus 329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 345566666555322 34777899999999999999999999988754 667777788888888777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
++-+.....| -++..+.++.-.|++++..+++.+-
T Consensus 394 kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7777776655 3666667777778888888887753
No 192
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.90 E-value=0.25 Score=31.98 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 045403 14 AKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 14 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 93 (144)
..+..+.+.+.+++|+...|..+|+.+.+.|++... ..+...++-+|+......+-.+.... ..+.++--+|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~--~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQY--PPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccC--hHHHHHHHHHHH
Confidence 355666777889999999999999999999986654 45556677788888777665554432 333444334432
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 94 KGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+ -...+..++..+...|++-+|.++.+...
T Consensus 87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 87 R----LGTAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred H----hhhhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 1 01145667788888999999999888753
No 193
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.86 E-value=0.69 Score=36.74 Aligned_cols=118 Identities=14% Similarity=0.021 Sum_probs=94.1
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD-YNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 82 (144)
.+.+.+..++|...+.+..+.. +-....|...-..+...|..++|...|..-.. +.|| +-.-+++-.++.+.|+..
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcc
Confidence 4566778888887777776553 33667778777888889999999999988665 3454 446788889999999887
Q ss_pred HHHH--HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 83 LAYR--TMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 83 ~a~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
.+.+ +..++.+.+ +.+...|-.+-..+-+.|+.++|.+.|+-
T Consensus 736 la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 7777 888888765 45677999999999999999999999985
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.85 E-value=0.23 Score=31.21 Aligned_cols=51 Identities=18% Similarity=0.091 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 045403 43 TGDMESVIHVMRKLDELAI--SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 43 ~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 93 (144)
.|++++|.+.|+.+..+-- +-..-+--.++.+|.+.+++++|...+++..+
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445555555555544310 11222333444445555555555555555544
No 195
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.79 E-value=0.5 Score=38.37 Aligned_cols=124 Identities=16% Similarity=0.035 Sum_probs=83.9
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CC-CC--HHHHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYD----VVLLNSMLCAYCRTGDMESVIHVMRKLDELA--IS-PD--YNTFHILIKYF 75 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~-p~--~~~~~~li~~~ 75 (144)
+...|++++|...+++....-...+ ....+.+...+...|++++|...+.+..... .. +. ..+...+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 4568999999999998765322222 2345666667788999999999998876421 11 11 23445556677
Q ss_pred HHhCcHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 76 RKEKMYMLAYRTMVDMHK----KGHQ--P-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~----~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
...|++++|...+++... .+.. + ....+..+...+...|++++|...+++...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 889999999998887653 2221 1 223344555667778999999999887543
No 196
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.75 E-value=0.36 Score=34.00 Aligned_cols=118 Identities=8% Similarity=0.041 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 8 GGCFEEAKQLARDFEA-KYDKYDVVLLNSMLCAYCR-TG-DMESVIHVMRKLDE-LAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
+..+.+|.++|+.... ..+-.|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...+|+.+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3446677777774332 3355688888888888776 22 34444445555543 3556888999999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 84 AYRTMVDMHKK-GHQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 84 a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
-.++++..... +..-|...|..+|+...+.||..-..++.+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 99999988754 5567888999999999999999988887763
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=0.41 Score=33.27 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC-CCCC-CHHHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELA----ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK-GHQP-EEELC 103 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~-~~~~~ 103 (144)
...|+..+..+- .|++..|..-|...++.. ..||..-| |-.++...|+.++|..+|..+.+. +-.| -+...
T Consensus 142 ~~~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 457888777654 556999999999888763 23444444 678888999999999999999864 2222 23455
Q ss_pred HHHHHHHhccCChHHHHHHHHHhhhcCCCCc
Q 045403 104 SSLIFHLGKMRAHSEALCLQHVKDIAKDRCA 134 (144)
Q Consensus 104 ~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~ 134 (144)
--|-.+..+.|+.++|...++++.++-++.+
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 5667777889999999999999887544443
No 198
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.69 E-value=0.32 Score=36.77 Aligned_cols=60 Identities=20% Similarity=0.074 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHKKGHQ-PEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..+-.+.-+.|+.++|.+.+.+|.+..-. -...+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33455555667777777777777654211 1233566677777777777777777776543
No 199
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.45 Score=33.00 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=87.3
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
..|.+++|++.++...+..+. |.++|--=+-..--.|+--+|.+-+++..+. ...|...|.-+-..|...|+++.|.-
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 468899999999999987644 7777776566666667666888888887765 44899999999999999999999999
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhc---cCChHHHHHHHHHhh
Q 045403 87 TMVDMHKKGHQPEEE-LCSSLIFHLGK---MRAHSEALCLQHVKD 127 (144)
Q Consensus 87 ~~~~m~~~~~~~~~~-~~~~l~~~~~~---~g~~~~a~~l~~~m~ 127 (144)
+++++.=. .|..+ -|..+-+.+.- ..++.-+++.+.+-.
T Consensus 176 ClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 176 CLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999853 45444 44455555433 334566777777654
No 200
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.59 E-value=0.36 Score=31.55 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHHhCcHHHHHHHHHHHHHC---CCCCCHH---
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY--NTFHILIKYFRKEKMYMLAYRTMVDMHKK---GHQPEEE--- 101 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~--- 101 (144)
...+..+.+.|.+.|+.++|.+.|.++.+....|.. ..+-.+|......++++.+...+.+.... |...+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 367889999999999999999999999887554443 35788899999999999998888877643 2211211
Q ss_pred -HHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 102 -LCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 102 -~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.|..+. +...|++.+|-++|-....
T Consensus 116 k~~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHH--HHHhchHHHHHHHHHccCc
Confidence 222222 2347799998888877654
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.54 E-value=0.19 Score=37.48 Aligned_cols=64 Identities=6% Similarity=-0.205 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 63 PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEE----ELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 63 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+...|+.+-.+|.+.|++++|...|++-.+. .|+. ..|..+-.+|.+.|++++|...+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667999999999999999999999998764 4653 4589999999999999999999998765
No 202
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.12 Score=36.83 Aligned_cols=117 Identities=10% Similarity=0.152 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
.+++..+..+.++.... -+..+.+..-+...+.|++++|.+=|+...+- |. -....||.-+..| +.|+.+.|.+
T Consensus 125 e~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy-qpllAYniALaHy-~~~qyasALk 199 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY-QPLLAYNLALAHY-SSRQYASALK 199 (459)
T ss_pred cccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCC-CchhHHHHHHHHH-hhhhHHHHHH
Confidence 34444444444443321 23445555556667889999999999998775 55 4467899888877 5678899999
Q ss_pred HHHHHHHCCCC-------------CC--------HHHHHHHHHH-------HhccCChHHHHHHHHHhhhc
Q 045403 87 TMVDMHKKGHQ-------------PE--------EELCSSLIFH-------LGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 87 ~~~~m~~~~~~-------------~~--------~~~~~~l~~~-------~~~~g~~~~a~~l~~~m~~~ 129 (144)
...+..++|++ || .-.-++++.+ +.+.|+.+.|.+-+-.|+-+
T Consensus 200 ~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 200 HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 99998877543 22 1123344444 44678888888888877654
No 203
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.40 E-value=0.7 Score=36.06 Aligned_cols=122 Identities=12% Similarity=0.004 Sum_probs=87.0
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYD-VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
...+-+.|+++.|...++..... .|+ +..|-+=-+.+.-.|.+++|..++++.++-.. ||...=+-..+-..+.++
T Consensus 378 aqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccc
Confidence 34567789999999998888764 333 34555666778888999999999988876554 777777788888888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH----------HHHHhccCChHHHHHHHHHhhh
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSL----------IFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l----------~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.++|..+.....+.|. +...+-+- -.+|.+.|++.+|++=|..+..
T Consensus 455 i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred cHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 9999988888877664 22221111 3456677777777777766654
No 204
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.37 E-value=0.35 Score=39.03 Aligned_cols=105 Identities=10% Similarity=0.014 Sum_probs=69.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CC--------CCCHHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AI--------SPDYNTFHILIKY 74 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~--------~p~~~~~~~li~~ 74 (144)
.|.-.|+.+.|.+-.+..+ +...|..|-+.|.+..++|-|.-++..|... |. .|+ .+=.-+.-.
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 3566799999998888765 5678999999999999999999999888743 43 232 222222222
Q ss_pred HHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 75 FRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
-.+.|++++|..++.+.++. -.|=+.|...|.+++|.++-+
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE 850 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAE 850 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHh
Confidence 34677888888887777643 223333444555555555444
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=0.15 Score=40.19 Aligned_cols=101 Identities=16% Similarity=0.022 Sum_probs=75.2
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
+..-|+..+|.++-.+.+ -||-..|=.-+.+++..+++++.+++-+.+++ +.-|.-.+.+|.+.|+.++|
T Consensus 694 li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 694 LILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHH
Confidence 445677777777766665 57888888888999999999888888777653 36677788889999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
.+++.+... .+ -...+|.+.|++.+|.++--
T Consensus 764 ~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 764 KKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 888877631 11 46677777777777776654
No 206
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.24 E-value=1 Score=34.67 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Q 045403 11 FEEAKQLARDFEAK-YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMV 89 (144)
Q Consensus 11 ~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 89 (144)
+..+.+..+..... ..+.+...|.++--.....|++++|...+++..+. .|+...|..+-+.+...|+.++|...++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555543332 23345577888766677789999999999998875 4788899999999999999999999999
Q ss_pred HHHHCCCCCCHHHH
Q 045403 90 DMHKKGHQPEEELC 103 (144)
Q Consensus 90 ~m~~~~~~~~~~~~ 103 (144)
+.... .|...+|
T Consensus 478 ~A~~L--~P~~pt~ 489 (517)
T PRK10153 478 TAFNL--RPGENTL 489 (517)
T ss_pred HHHhc--CCCCchH
Confidence 98764 3443343
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.71 Score=32.55 Aligned_cols=116 Identities=14% Similarity=-0.042 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC---cHHHHHHHH
Q 045403 12 EEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK---MYMLAYRTM 88 (144)
Q Consensus 12 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~ 88 (144)
+....-++.-....+ -|...|-.|-..|...|+++.|..-|..-.+-- .+|...+..+-.++.... +-.++..++
T Consensus 139 ~~l~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 333333444334444 499999999999999999999999999887631 234455555555543332 455789999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 89 VDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 89 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
++..+.. .-+...-..|-..+...|++.+|...++.|....
T Consensus 217 ~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 217 RQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9998753 2345555667778899999999999999988763
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.66 Score=32.58 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-----HHHhCcHHH
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKY-----FRKEKMYML 83 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~ 83 (144)
|.+.-....+.+..+...+.++...+.+.+.-.+.|+.+.|...|++..+..-+.|..+++.++.- |.-.+++..
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence 344444555555555555566666677777777777777777777766655444555555555432 223445555
Q ss_pred HHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHHHHHHhhhc
Q 045403 84 AYRTMVDMHKKGHQPEEELCS--SLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+...+.+.....- .|...-| +|+..| .|+...|.+..+.|...
T Consensus 271 a~r~~~~i~~~D~-~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 271 AHRFFTEILRMDP-RNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHhhccccCC-CchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc
Confidence 5556655553321 1222222 233333 45777777777777653
No 209
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.98 E-value=0.16 Score=40.49 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=65.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
+.|++.|+++.|.++|.+. ..++-.|..|.+.|+|+.|.++-.+.- |.....+.|-+-..-.-+.|++.
T Consensus 773 dhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchh
Confidence 5688889999999987643 236677888999999988888876543 22233344444333344445444
Q ss_pred HHHHHH-------------HHH------HH--CCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 83 LAYRTM-------------VDM------HK--KGHQPE--EELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 83 ~a~~~~-------------~~m------~~--~~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
+|.+++ ++- .+ ....|+ ..|...+.+-|-..|++..|..-|-+.
T Consensus 842 eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 842 EAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 443332 211 00 001122 234445566666777777777666543
No 210
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.81 E-value=0.87 Score=36.82 Aligned_cols=86 Identities=19% Similarity=0.260 Sum_probs=71.2
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
..+.|+.++|..+++.....+.. |..|-.++-.+|.+.++.++|..+|++.... -|+..-...+..+|.+.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999988777666 9999999999999999999999999998753 58888889999999998887765
Q ss_pred HHHHHHHHH
Q 045403 85 YRTMVDMHK 93 (144)
Q Consensus 85 ~~~~~~m~~ 93 (144)
.+.--+|.+
T Consensus 130 Qkaa~~LyK 138 (932)
T KOG2053|consen 130 QKAALQLYK 138 (932)
T ss_pred HHHHHHHHH
Confidence 444444443
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.79 E-value=0.53 Score=35.44 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHH-HHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELA-ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCS-SLI 107 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l~ 107 (144)
+.+|+..|+.-.+..-++.|..+|-+.++.| +.+++..+++++..++. |+...|..+|+-=... -||...|. -.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4566667777666666777777777777776 45677777777766643 4445555555543322 23333332 344
Q ss_pred HHHhccCChHHHHHHHH
Q 045403 108 FHLGKMRAHSEALCLQH 124 (144)
Q Consensus 108 ~~~~~~g~~~~a~~l~~ 124 (144)
.-+...++-+.|..+|+
T Consensus 474 ~fLi~inde~naraLFe 490 (660)
T COG5107 474 LFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHhCcHHHHHHHHH
Confidence 44555566666666665
No 212
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.71 E-value=0.37 Score=39.46 Aligned_cols=29 Identities=17% Similarity=-0.056 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 99 EEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
|...|..+..+|.++|.+.-|.++|.+.-
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 56678888899999999999999887654
No 213
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.71 E-value=0.094 Score=24.51 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRK 55 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~ 55 (144)
|+.|-+.|.+.|++++|..+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45556666666666666666655
No 214
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.93 Score=34.52 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=63.5
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD-YNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 82 (144)
.+.+.|++..|++.|.++.+..+. |...|+..--+|.+.+.+..|.+=.+.-.+. .|+ ...|.-=..++....+++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998887644 8899999999999999988888876666653 232 233433344444555777
Q ss_pred HHHHHHHHHHHC
Q 045403 83 LAYRTMVDMHKK 94 (144)
Q Consensus 83 ~a~~~~~~m~~~ 94 (144)
.|.+.|++-.+.
T Consensus 444 kAleay~eale~ 455 (539)
T KOG0548|consen 444 KALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhc
Confidence 788777777654
No 215
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.64 E-value=1.1 Score=31.74 Aligned_cols=88 Identities=14% Similarity=0.075 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH-----HHCCCCC
Q 045403 25 YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AISPDYNTFHILIKYFRKEKMYMLAYRTMVDM-----HKKGHQP 98 (144)
Q Consensus 25 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~~~~~ 98 (144)
|..++..+.-.+|..+++.+++.+..+++..-... +..-|...|..+|+.....|+..-..+++++= ++.|+..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v 276 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV 276 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC
Confidence 45678888899999999999999999999988765 66789999999999999999976555554432 2335556
Q ss_pred CHHHHHHHHHHHhc
Q 045403 99 EEELCSSLIFHLGK 112 (144)
Q Consensus 99 ~~~~~~~l~~~~~~ 112 (144)
+...-.++-..|.+
T Consensus 277 ~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 277 TDELRSQLSELFKK 290 (292)
T ss_pred CHHHHHHHHHHHHh
Confidence 66666666555543
No 216
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.58 E-value=0.51 Score=37.44 Aligned_cols=89 Identities=15% Similarity=-0.004 Sum_probs=72.8
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIH--VMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
+-..|.+++|.+.|.......+. ++.+-+++-.++.+.|+..-|.+ ++.++.+.+. -+...|--+-..+-+.|+.+
T Consensus 694 ~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchH
Confidence 34567888888888887765444 56778889999999998877777 9999988654 67889999999999999999
Q ss_pred HHHHHHHHHHHCC
Q 045403 83 LAYRTMVDMHKKG 95 (144)
Q Consensus 83 ~a~~~~~~m~~~~ 95 (144)
.|.++|+...+..
T Consensus 772 ~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 772 QAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887643
No 217
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.49 E-value=1.2 Score=31.71 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHHhCc---
Q 045403 10 CFEEAKQLARDFEAKYD---KYDVVLLNSMLCAYCRTG--DMESVIHVMRKLDELAISPDYN-TFHILIKYFRKEKM--- 80 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~--- 80 (144)
...+|.++|+.|++..+ .++-..+.+++..-...- -.+.++.+|+.+.+.|...+.. -+.+-+-+++....
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 46789999999998743 466677777766622221 2478899999999988875433 44444444444322
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCC---hHHHHHHHHHhhhc
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSL-IFHLGKMRA---HSEALCLQHVKDIA 129 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~~g~---~~~a~~l~~~m~~~ 129 (144)
..++..+++.+.+.|+++....|..+ +-++...+. ++...++.+.+.+.
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhC
Confidence 45788899999999999988888764 333344443 55666666666654
No 218
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.48 E-value=0.55 Score=27.83 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 045403 33 LNSMLCAYCRTG--DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH-KKGHQPEEELCSSLIF 108 (144)
Q Consensus 33 ~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~l~~ 108 (144)
|+.---.|...+ +..++.+-++.+....+.|+.....+.+++|.+.+++..|.++++-.+ +-|-. ...|..++.
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 343334444433 456777888888887888999999999999999999999998888887 33322 226665554
No 219
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.43 E-value=0.32 Score=36.82 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=52.2
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDK-YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY--NTFHILIKYFR 76 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~ 76 (144)
++-+.|+.++|++.|++|.+.... -+....-.||.++...+.+.++..++.+..+... |.+ .+|+..+-.+.
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLkaR 342 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKAR 342 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHHH
Confidence 344679999999999999865433 2456788899999999999999999999865433 433 44666554433
No 220
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.41 E-value=1.9 Score=33.78 Aligned_cols=122 Identities=13% Similarity=-0.019 Sum_probs=80.1
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 85 (144)
+..|+.++|....+--....+. +.++|.++.-.+-..+++++|.+.|......+- -|...|..+--.-.+.++++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHH
Confidence 3456666666666654443333 667777777777777778888888877655321 34455555555556666766666
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 86 RTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 86 ~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
..-.++.+. .|+ ...|..+.-+..-.|+...|..+.++..+...
T Consensus 130 ~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 130 ETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 665555543 344 34677777888888999999999998877654
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=1.2 Score=31.31 Aligned_cols=102 Identities=9% Similarity=-0.109 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHH-----H
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELC-----S 104 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-----~ 104 (144)
..+-+.+.+.+...|.+.-..+++++.++..-+-+...-+.+...-...||.+.|...|++..+..-+.+..++ .
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 35567788888888999999999999998776678888888888899999999999999988765434444443 3
Q ss_pred HHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 105 SLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 105 ~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
.....|.-.+++..|-..+.++....+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~ 283 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDP 283 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCC
Confidence 444556677888888888887766533
No 222
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.29 E-value=0.95 Score=29.78 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=85.3
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH-H--HHHhCc
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVL-LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIK-Y--FRKEKM 80 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~--~~~~g~ 80 (144)
+++.+..++|+.-|.++.+.|...-... ---+-....+.|+...|..-|++.-...-.|-..--..-++ + +.-.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4567889999999999998765422211 11223345678999999999999987655565553333333 2 344677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
++....-.+.+...+-.-....-.+|--+-.+.|++..|.++|+++-+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888777777776544333344455677777799999999999999876
No 223
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.63 Score=34.04 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhcc
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCS-SLIFHLGKM 113 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~ 113 (144)
++-.++....+++++.-.++..++.-..-|.+-+| +..+++..|...+|+++|-+.....+ .+..+|. .|.++|.+.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhc
Confidence 44555555666788887777777665544555444 56778888999999999877754333 3556665 477889999
Q ss_pred CChHHHHHHHHHhh
Q 045403 114 RAHSEALCLQHVKD 127 (144)
Q Consensus 114 g~~~~a~~l~~~m~ 127 (144)
+..+.|.+++-.+.
T Consensus 442 kkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTN 455 (557)
T ss_pred CCchHHHHHHHhcC
Confidence 99999988876553
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.13 E-value=0.86 Score=28.70 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=59.0
Q ss_pred hccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYD--KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
.+.|++++|.+.|+.+...-+ +-....-=.++.+|.+.+++++|...+++.++.+-..-.+-|.-.+.+++.....+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 467999999999999987632 22345566789999999999999999999998765444466777777776655543
No 225
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.11 E-value=0.11 Score=24.23 Aligned_cols=24 Identities=8% Similarity=-0.136 Sum_probs=19.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHH
Q 045403 102 LCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 102 ~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
++..|-..|.+.|++++|.+++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466788888899999999999887
No 226
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.07 E-value=1.1 Score=29.84 Aligned_cols=114 Identities=17% Similarity=0.085 Sum_probs=69.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHHhC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA---ISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g 79 (144)
.+....|+..+|...|++....-...|....-.+-++-...+++..+...++++-+.. -.|| +.-.+-..+.-.|
T Consensus 97 ~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g 174 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQG 174 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcC
Confidence 3456677777777777777665555666666666677777777777777777766543 2232 3344455666677
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 120 (144)
....|...|+..... .|+...-.-.-..+.+.|..+++.
T Consensus 175 ~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 175 KYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred CchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 777777777777653 455443333344445555544443
No 227
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=1.4 Score=34.42 Aligned_cols=99 Identities=13% Similarity=-0.004 Sum_probs=65.5
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 85 (144)
.+.|+++.|.++..+.. +..-|..|-++....+++..|.+.|.+... |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 35566666666655443 566688888888888888888888776543 455666666777766555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
.+-...++.| ..|..+-+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQG------KNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHHh
Confidence 5555555444 234455667778888888887764
No 228
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=2.3 Score=35.49 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=68.4
Q ss_pred hhccCCHHHHHHHHHHHHhcC---------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 045403 5 FCRGGCFEEAKQLARDFEAKY---------------------DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP 63 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~---------------------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 63 (144)
+..++.+++|+++|+.....+ ..-....|+.+-.+=.+.|...+|.+-|=+ .-
T Consensus 1058 ai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------ad 1131 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------AD 1131 (1666)
T ss_pred HhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cC
Confidence 445566777777777653210 001234455555555555555555443322 14
Q ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 045403 64 DYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQ 123 (144)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 123 (144)
|...|.-+++...+.|.+++..+++.-.++..-.|. +-+.|+-+|++.+++.+..+.+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh
Confidence 567788888888888888888877776666554554 4456888888888777766554
No 229
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.81 E-value=1.3 Score=29.50 Aligned_cols=126 Identities=16% Similarity=0.114 Sum_probs=76.8
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh---
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDK--YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE--- 78 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--- 78 (144)
.+.+.|++++|.+.|+.+....+. --....-.+..++.+.|+++.|...+++..+.--.-...-+...+.+.+..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 356789999999999999876443 223445567888999999999999999988753222223333333333321
Q ss_pred ----------CcHHHHHHHHHHHHHCCCCCCHH------H-----H-------HHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 79 ----------KMYMLAYRTMVDMHKKGHQPEEE------L-----C-------SSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 79 ----------g~~~~a~~~~~~m~~~~~~~~~~------~-----~-------~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
+....|...|+.+.+. -|++. . . -.+.+-|.+.|.+..|..-++.+.+.-
T Consensus 94 ~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS
T ss_pred ccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 2234567777777643 12111 0 0 113566788899999988888887653
Q ss_pred C
Q 045403 131 D 131 (144)
Q Consensus 131 ~ 131 (144)
+
T Consensus 172 p 172 (203)
T PF13525_consen 172 P 172 (203)
T ss_dssp T
T ss_pred C
Confidence 3
No 230
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.70 E-value=1.1 Score=28.36 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=72.5
Q ss_pred HhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---C--CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHHH
Q 045403 22 EAKYDKYDV--VLLNSMLCAYCRTGDMESVIHVMRKLDELA---I--SPDYNTFHILIKYFRKEKMYM-LAYRTMVDMHK 93 (144)
Q Consensus 22 ~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~--~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~ 93 (144)
.+.+.++++ ...|++++-....+.......+++.+..-. + ..|..+|.+++++.+...-.. .+..+|+-|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 444555555 456888888888899998888888874321 1 255667999999997777633 57789999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCChH
Q 045403 94 KGHQPEEELCSSLIFHLGKMRAHS 117 (144)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~g~~~ 117 (144)
.+.+++..-|..+|+++.+....+
T Consensus 109 ~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCc
Confidence 888999999999999977654443
No 231
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.62 E-value=1.3 Score=28.96 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=63.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHH--H
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDV--VLLNSMLCAYCRTGDMESVIHVMRKLDEL---AISPDYNTFHILIKY--F 75 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~--~ 75 (144)
+.|++.|+.+.|.+.|.++.+....|.. ..+-.+|+.....+++..+.....+.... |-.++...--....+ +
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~ 123 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLAN 123 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 5689999999999999999987655443 55668888999999999999998887653 222222221122222 3
Q ss_pred HHhCcHHHHHHHHHHHH
Q 045403 76 RKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~ 92 (144)
...+++..|-+.|-+..
T Consensus 124 l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 124 LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHhchHHHHHHHHHccC
Confidence 34678888888877765
No 232
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.61 E-value=0.19 Score=24.56 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHH
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~ 93 (144)
|..+-..|...|++++|.+++++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555554
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=1.8 Score=30.66 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=80.3
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
....|++.+|..+|......... +...--.+..+|...|+.+.|..++..+-..--.........-|....+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 45678999999999998876554 45666778899999999999999999875432222222322334455555555555
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 85 YRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 85 ~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..+-.+... .| |...--.+...+...|+.+.|++.+=.+...
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555543 34 4445556777788888888877766554443
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.51 E-value=1.1 Score=27.73 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMV 89 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 89 (144)
....+|..+.+.+....+...++.+.+.+. .+...++.++..|++.+.- +....+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~-~ll~~l~ 64 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQ-KEIERLD 64 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHH-HHHHHHH
Confidence 345778888888899999999999988874 7888999999999987653 3333443
No 235
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=1.7 Score=31.35 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=61.1
Q ss_pred ccCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 7 RGGCFEEAKQLARDFEAK---YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
+...++.+...+=.++.. ...|+... -+.++.+.+ =+++++.-++..-++.|+=||.++++.+++.+.+.+++.+
T Consensus 76 ~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~ 153 (418)
T KOG4570|consen 76 SREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKD 153 (418)
T ss_pred cccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHH
Confidence 456677777776666542 11222222 223333333 3577999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHC
Q 045403 84 AYRTMVDMHKK 94 (144)
Q Consensus 84 a~~~~~~m~~~ 94 (144)
|.++.-.|...
T Consensus 154 aa~vvt~~~~q 164 (418)
T KOG4570|consen 154 AASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHHH
Confidence 99988887744
No 236
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.25 E-value=1.1 Score=36.12 Aligned_cols=81 Identities=10% Similarity=0.109 Sum_probs=53.2
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
+.+.|++++|..-|-+-... +.| +-+|.-|.......+....++.+.+.|+ .+...-+.|+.+|.+.++.++.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHH
Confidence 45667777777776655432 222 2345666666667777777777777777 6666777888888888877666
Q ss_pred HHHHHHHH
Q 045403 85 YRTMVDMH 92 (144)
Q Consensus 85 ~~~~~~m~ 92 (144)
.++.+...
T Consensus 451 ~efI~~~~ 458 (933)
T KOG2114|consen 451 TEFISKCD 458 (933)
T ss_pred HHHHhcCC
Confidence 55554443
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.20 E-value=2.5 Score=31.09 Aligned_cols=126 Identities=17% Similarity=0.021 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhCCCCCCHHH---HHHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRT---------GDMESVIHVMRKLDELAISPDYNT---FHILIKYF 75 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~ 75 (144)
.|+.++|.+++.........++..+|..+.+.|-.. ...++|.+.|.+--+ +.||..+ +.+|+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHc
Confidence 688888888888866555667777888777776431 135667766665433 2344333 33344433
Q ss_pred HHhCc-HHHHHHHH---HHHH-HCC---CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHH
Q 045403 76 RKEKM-YMLAYRTM---VDMH-KKG---HQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMP 136 (144)
Q Consensus 76 ~~~g~-~~~a~~~~---~~m~-~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 136 (144)
+.... -.+..++. ..+. +.| -..+-..+.+++.+..-.|+.++|.+..++|... .+..|.
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l-~~~~W~ 340 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL-KPPAWE 340 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCcchh
Confidence 33211 11222222 2222 233 2356667888999999999999999999998864 455553
No 238
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.18 E-value=2.5 Score=30.96 Aligned_cols=122 Identities=15% Similarity=0.001 Sum_probs=88.2
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCC------------CCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDK------------YDVVLLN--SMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFH 69 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~------------p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 69 (144)
.+.|.|.+++|..=|++..+...+ +....|+ ..+..+...|+...|......+.+-.+ -|...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHH
Confidence 467899999999999999876443 1122222 345556678899999999999887533 6888999
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 70 ILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
.-.++|...|++..|..=+....+.. .-++.++--+-..+...|+.+.++..+++-.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999988877666665543 2234444455566777888888887777644
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.15 E-value=1.3 Score=27.75 Aligned_cols=118 Identities=11% Similarity=0.116 Sum_probs=73.8
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CC----------------CCCHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AI----------------SPDYNTFH 69 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~----------------~p~~~~~~ 69 (144)
-.|.+++..++..+..+ +.+..-||=.|.-....-+=+-+.++++..-+. .+ ..+...+.
T Consensus 14 ldG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD 90 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVD 90 (161)
T ss_dssp HTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHH
T ss_pred HhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHH
Confidence 35888888888888775 345666666666665555555555555554432 00 12333455
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 70 ILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.-++.....|+-|.-.++..++.+ +-.+++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 567777777888888888888876 3478888899999999999999999999988654
No 240
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.15 E-value=0.02 Score=35.67 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR 114 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 114 (144)
.+|..+.+.+....+..+++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 456777888889999999999998776678999999999999998877777766622 1122334566666677
Q ss_pred ChHHHHHHHHHhhhc
Q 045403 115 AHSEALCLQHVKDIA 129 (144)
Q Consensus 115 ~~~~a~~l~~~m~~~ 129 (144)
.++++.-++.++...
T Consensus 85 l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNH 99 (143)
T ss_dssp SHHHHHHHHHCCTTH
T ss_pred hHHHHHHHHHHcccH
Confidence 777777776665443
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.12 E-value=0.52 Score=22.94 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDEL 59 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (144)
+|..+-.+|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667778888888888888888888775
No 242
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.09 E-value=1.8 Score=29.00 Aligned_cols=82 Identities=11% Similarity=0.104 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhcc
Q 045403 37 LCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK---KGHQPEEELCSSLIFHLGKM 113 (144)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~l~~~~~~~ 113 (144)
-.-+.+.|+ +.|...|-.+...+.--+...-.. +..|-...+.+++..++.+..+ .+-.+|+..+.+|.+.|.+.
T Consensus 114 Yy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 114 YYHWSRFGD-QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 334455565 788888888888877545444444 4445557778889988888774 33478999999999999999
Q ss_pred CChHHHH
Q 045403 114 RAHSEAL 120 (144)
Q Consensus 114 g~~~~a~ 120 (144)
|+.+.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9998875
No 243
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.99 E-value=1.1 Score=26.34 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 045403 45 DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH-KKGHQPEEELCSSLIF 108 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~l~~ 108 (144)
+..++.+-++.+....+.|+.....+.+++|.+.+|+..|.++++-.+ +-|. +..+|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 677888888888888888999999999999999999999999998887 4332 4446665554
No 244
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.95 E-value=3.1 Score=31.48 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=82.3
Q ss_pred hhccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDK-YD----VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKY--FRK 77 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~ 77 (144)
+-+.+++.+|.++|...-++.-. |. ...-+-+|+||...+ .+.....+....+. .| ...|-.+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 34678999999999988765332 11 344567888888764 66666666666553 12 3345555554 335
Q ss_pred hCcHHHHHHHHHHHHHC--CCC------------CCHHHHHHHHHHHhccCChHHHHHHHHHhhhc--CCCCcHH
Q 045403 78 EKMYMLAYRTMVDMHKK--GHQ------------PEEELCSSLIFHLGKMRAHSEALCLQHVKDIA--KDRCAMP 136 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~ 136 (144)
.++.++|.+.+..=.++ +-. +|-..-+..+.++.+.|.+++++.++.++... ++.+.|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 77788877766555432 211 22223345677888999999999999998766 4555554
No 245
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.93 E-value=0.43 Score=22.46 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLD 57 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (144)
.+++.+-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455666666666666666666666654
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.89 E-value=0.2 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVI 50 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~ 50 (144)
|...|+.+-..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 6677777777777777777664
No 247
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.57 E-value=2.6 Score=34.95 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=61.1
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHHhCcHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKY--FRKEKMYM 82 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~ 82 (144)
|-+.++..+|+.-|+......+. |...|..+..+|.++|++..|.++|.+... +.|+ .+|...-.+ -+-.|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHHHHHhhhHH
Confidence 45667788888888887765555 889999999999999999999999988665 3443 344443333 34467788
Q ss_pred HHHHHHHHHH
Q 045403 83 LAYRTMVDMH 92 (144)
Q Consensus 83 ~a~~~~~~m~ 92 (144)
++...+....
T Consensus 648 eald~l~~ii 657 (1238)
T KOG1127|consen 648 EALDALGLII 657 (1238)
T ss_pred HHHHHHHHHH
Confidence 8877776665
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.39 E-value=3.9 Score=31.13 Aligned_cols=118 Identities=10% Similarity=0.027 Sum_probs=87.5
Q ss_pred ccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHHhCcHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKY-DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT-FHILIKYFRKEKMYMLA 84 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a 84 (144)
+-.-++.|..+|-...+.| +.|++..++++|..++.. +..-|..+|+-=... . ||... -+-.+.-+...++-+.|
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~-d~~ta~~ifelGl~~-f-~d~~~y~~kyl~fLi~inde~na 485 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG-DRATAYNIFELGLLK-F-PDSTLYKEKYLLFLIRINDEENA 485 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC-CcchHHHHHHHHHHh-C-CCchHHHHHHHHHHHHhCcHHHH
Confidence 3445888999999999998 789999999999998864 567888888642221 2 55544 35667777888998999
Q ss_pred HHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 85 YRTMVDMHKKGHQP--EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 85 ~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..+|+.-... +.- -..+|..+|+--...|++..+..+-+++..
T Consensus 486 raLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 486 RALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 9999954421 112 256899999988899999777777776654
No 249
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.16 E-value=4.6 Score=33.90 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
|+..|.-.|+...+.|.+++..+.+...++..-.|.. -+.+|-+|.+.+++.+...+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHH
Confidence 6778889999999999999999988888777655644 45788888888887765544
No 250
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.12 E-value=1.5 Score=25.79 Aligned_cols=49 Identities=8% Similarity=-0.007 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|.=++.+.++.+....+.|++.+..+.+++|.+.+|+.-|.++++-++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345677788888888999999999999999999999999999998764
No 251
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.49 E-value=0.58 Score=21.96 Aligned_cols=28 Identities=18% Similarity=-0.076 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 101 ELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 101 ~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+++.|-..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777788888888888888887554
No 252
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.48 E-value=1.5 Score=31.98 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=50.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
-|.+.|.+++|+..|..-... .| |.++|..--.+|.+...+..|+.=...... .-...+++|++.+...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--------Ld~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--------LDKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--------hhHHHHHHHHHHHHHH
Confidence 467888888888888876653 44 888888888888888877766654444332 1123456666665555
Q ss_pred HHHHHHHHH
Q 045403 83 LAYRTMVDM 91 (144)
Q Consensus 83 ~a~~~~~~m 91 (144)
.++....+.
T Consensus 176 ~~Lg~~~EA 184 (536)
T KOG4648|consen 176 ESLGNNMEA 184 (536)
T ss_pred HHHhhHHHH
Confidence 444444443
No 253
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.39 E-value=0.73 Score=20.73 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
+|..+..++...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555556666666666666655544
No 254
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=91.33 E-value=2 Score=25.68 Aligned_cols=27 Identities=7% Similarity=0.240 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 045403 67 TFHILIKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 93 (144)
-|..++..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888888888888888888876
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.30 E-value=3.6 Score=28.57 Aligned_cols=72 Identities=14% Similarity=0.237 Sum_probs=48.3
Q ss_pred hccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYD--KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK 77 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 77 (144)
.+.|++++|.+.|+.+...-+ +-...+-=.++.++.+.+++++|....++.....-.....-|..-|++.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 357899999999999886533 223455556777788889999999999888765332233344444444443
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.30 E-value=4.5 Score=29.63 Aligned_cols=87 Identities=7% Similarity=-0.109 Sum_probs=50.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccC
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK---KGHQPEEELCSSLIFHLGKMR 114 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~l~~~~~~~g 114 (144)
.++.+.|.+++|++.-++-.+-+- .|.-.-.+.....-..|++.++.+...+-.. .+...-.+.|=.-.-.+...+
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~a 261 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGA 261 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhccc
Confidence 334456777777777666554322 4444555566666667777777666554431 111122223333344556778
Q ss_pred ChHHHHHHHHH
Q 045403 115 AHSEALCLQHV 125 (144)
Q Consensus 115 ~~~~a~~l~~~ 125 (144)
+++.|+++|++
T Consensus 262 eye~aleIyD~ 272 (491)
T KOG2610|consen 262 EYEKALEIYDR 272 (491)
T ss_pred chhHHHHHHHH
Confidence 99999999885
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.00 E-value=5.9 Score=32.25 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=76.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCA----YCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~----~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 78 (144)
+...+-..++-|+.+ .+..+..++ .--.+... +.+.|++++|..-|-+-... +.| +-+|+-|...
T Consensus 342 ~iL~kK~ly~~Ai~L---Ak~~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 342 DILFKKNLYKVAINL---AKSQHLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHhhhHHHHHHH---HHhcCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 344555556666666 334434433 33333333 55789999999988775532 223 3456777778
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 79 KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
..+..-..+++.+.+.|+ -+...-+.|+.+|.+.++.++-.+..+.-.
T Consensus 411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 888888889999999886 455566789999999999888777776544
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.88 E-value=4.2 Score=28.53 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=79.7
Q ss_pred hccCCHHHHHHHHHHHHhcC--CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhC--------CCCCCH----
Q 045403 6 CRGGCFEEAKQLARDFEAKY--DKYDV------VLLNSMLCAYCRTGDMESVIHVMRKLDEL--------AISPDY---- 65 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~--~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~---- 65 (144)
.+.|+.+.|...+.+..... ..|+. ..||+-...+.+..+++.|...+++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46899999999999987643 33333 55666666666653666555555443221 223333
Q ss_pred -HHHHHHHHHHHHhCcHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 66 -NTFHILIKYFRKEKMYML---AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 66 -~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
.+...++.+|...+..+. |..+++.+.+. ..-...++-.-++.+.+.++.+++.+++.+|...-+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 357778888888776554 55566666433 222344565667777778999999999999886533
No 259
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=5.1 Score=29.67 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=64.9
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHHhCcH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFH-ILIKYFRKEKMY 81 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~ 81 (144)
.+|.|.+.+..|++..+.....+.. |+...=---.++...++++.|...|+++.+ +.|+...-+ -++.+-.+..+.
T Consensus 265 ~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 265 ACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHH
Confidence 4678889999999999998876544 777777778889999999999999999987 467655544 444444444444
Q ss_pred H-HHHHHHHHHH
Q 045403 82 M-LAYRTMVDMH 92 (144)
Q Consensus 82 ~-~a~~~~~~m~ 92 (144)
. ...++|..|-
T Consensus 342 ~~kekk~y~~mF 353 (397)
T KOG0543|consen 342 EEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHh
Confidence 4 3467888885
No 260
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=90.58 E-value=4.7 Score=28.59 Aligned_cols=92 Identities=9% Similarity=-0.060 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLG- 111 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~- 111 (144)
...=|.|+++.+++.++....-..-+.--+.......-.|-.|++.++...+.++-..=.+..-.-+...|.++...|.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3456888999999999887665544332223345556666678899998887777666553211223334666665555
Q ss_pred ----ccCChHHHHHHHH
Q 045403 112 ----KMRAHSEALCLQH 124 (144)
Q Consensus 112 ----~~g~~~~a~~l~~ 124 (144)
=.|.+++|+++..
T Consensus 166 ~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHhccccHHHHHHHHh
Confidence 4799999988873
No 261
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=2 Score=34.24 Aligned_cols=92 Identities=9% Similarity=-0.026 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 27 KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
...--+.+--+.-+...|+-.+|.++-.+.+- ||...|.--+.+++..+++++.+++-+.++ .+..|...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 33334455556666778888999998888763 999999999999999999998877766663 25578889
Q ss_pred HHHHhccCChHHHHHHHHHhhh
Q 045403 107 IFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 107 ~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+.+|.+.|+.++|.+.+-+...
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC
Confidence 9999999999999999987653
No 262
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=6.3 Score=29.69 Aligned_cols=121 Identities=9% Similarity=0.009 Sum_probs=88.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh----hhC-------C---CCCCHH---
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKL----DEL-------A---ISPDYN--- 66 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~-------g---~~p~~~--- 66 (144)
++.+.|+.++|.--|+...... +.+..+|--|+..|.-.|...+|.-+-+.. ..+ | +-||++
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHH
Confidence 4566788899999998877653 348899999999999998888776554432 211 1 012222
Q ss_pred ------------------HHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 67 ------------------TFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 67 ------------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
..+.+...+...|..+++..++++-.. ..||...++.|-+.+.-.+.+++|++.|..-.
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 234455567778888888888888775 36899999999999999999999998888644
No 263
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.29 E-value=0.76 Score=22.72 Aligned_cols=21 Identities=5% Similarity=-0.096 Sum_probs=10.4
Q ss_pred HHHHHHhCcHHHHHHHHHHHH
Q 045403 72 IKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~ 92 (144)
-.+|...|+.+.|..++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344555555555555555444
No 264
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.75 E-value=3.5 Score=28.25 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=55.1
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL--AISPDYNTFHILIKYF 75 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~ 75 (144)
++.+.+.+++.+++...++=.+..+. |..+--.++..++-.|++++|..-++-.-.- .-.+-..+|..+|.+-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 45677889999999999888777555 7888889999999999999998877765432 2234455676666653
No 265
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.67 E-value=5.4 Score=27.92 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=71.0
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC-CHHHHHHHHHHHHHhC
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVL---LNSMLCAYCRTGDMESVIHVMRKLDELA-ISP-DYNTFHILIKYFRKEK 79 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g 79 (144)
+.+.|++..|..-|....+..+. +..+ +==|..++...|++++|-.+|..+.+.- =.| -..+.--+-.+..+.|
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 56789999999999999887554 3333 3347788999999999999999988752 112 3356777778888999
Q ss_pred cHHHHHHHHHHHHHCCCCCCH
Q 045403 80 MYMLAYRTMVDMHKKGHQPEE 100 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~ 100 (144)
+.++|+..+++..+. .|+.
T Consensus 230 ~~d~A~atl~qv~k~--YP~t 248 (262)
T COG1729 230 NTDEACATLQQVIKR--YPGT 248 (262)
T ss_pred CHHHHHHHHHHHHHH--CCCC
Confidence 999999999999875 3543
No 266
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=89.65 E-value=4.4 Score=26.91 Aligned_cols=57 Identities=19% Similarity=0.106 Sum_probs=42.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAI--SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
......|++++|...|+++..... +--....-.+..++-+.|+++.|...++++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678999999999999987522 223345567788899999999999999998864
No 267
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=7.4 Score=29.35 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 99 EEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
+-..|.-|+.+|.-.|.+.+|.-.-..
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 566888888888888888887665543
No 268
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.08 E-value=3.3 Score=24.65 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCcHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 68 FHILIKYFRKEKMYM--LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 68 ~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
|.+--..|....+.| +..+-++.+....+.|++.+..+.+++|.+.+|+.-|.++++-++..
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333344444444444 56777888888889999999999999999999999999999988764
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.70 E-value=6.3 Score=27.43 Aligned_cols=82 Identities=17% Similarity=0.069 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI--SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
-...|+..+.. .+.|++++|.+.|+.+.++.. +-..-+--.++.++-+.++.+.|...+++..+.-..-...-|..-
T Consensus 34 ~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 33445544443 345666777777776665422 123334444555566666777777666666643222223334444
Q ss_pred HHHHh
Q 045403 107 IFHLG 111 (144)
Q Consensus 107 ~~~~~ 111 (144)
|.+.+
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 44444
No 270
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.96 E-value=11 Score=29.30 Aligned_cols=124 Identities=11% Similarity=0.008 Sum_probs=74.0
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
++.++++-++.-+..+..+|...| -+-..|-.++.+|.++ .-+.-..+|.++.+..+ |.+...--+.-+.+.++.
T Consensus 73 ~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yEkik~ 147 (711)
T COG1747 73 LTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYEKIKK 147 (711)
T ss_pred HHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHHHhch
Confidence 566777777888888888887653 3566677788888887 45677777777766433 222222222222222333
Q ss_pred HHHHH--------------------------------------HHHHHH-HCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 045403 82 MLAYR--------------------------------------TMVDMH-KKGHQPEEELCSSLIFHLGKMRAHSEALCL 122 (144)
Q Consensus 82 ~~a~~--------------------------------------~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 122 (144)
+.+.. +..... +.|.......+.-+.+-|....++++|.++
T Consensus 148 sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~I 227 (711)
T COG1747 148 SKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRI 227 (711)
T ss_pred hhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHH
Confidence 33222 222222 124444555666667778888889999998
Q ss_pred HHHhhhcC
Q 045403 123 QHVKDIAK 130 (144)
Q Consensus 123 ~~~m~~~~ 130 (144)
+..+.+..
T Consensus 228 lk~il~~d 235 (711)
T COG1747 228 LKHILEHD 235 (711)
T ss_pred HHHHhhhc
Confidence 88655443
No 271
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.64 E-value=0.83 Score=19.50 Aligned_cols=20 Identities=25% Similarity=0.012 Sum_probs=12.3
Q ss_pred HHHHHHhccCChHHHHHHHH
Q 045403 105 SLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 105 ~l~~~~~~~g~~~~a~~l~~ 124 (144)
.+-.++...|+.++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 45555666666666666654
No 272
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=87.64 E-value=6 Score=25.99 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 62 SPDYNTFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 62 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
.|+..++..++..+...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555544
No 273
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=87.42 E-value=4.8 Score=26.46 Aligned_cols=57 Identities=9% Similarity=-0.035 Sum_probs=41.2
Q ss_pred HHHHHHhCcHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHK-KGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+.......+.+......+...+ ....|+..+|..++.++...|+.++|.++.+++..
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333355555554444444432 23579999999999999999999999999998764
No 274
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.31 E-value=5.2 Score=24.88 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 45 DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
+-.++.+-++......+.|+......-+.++.+.+|+..|.++|+-.+
T Consensus 64 D~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445677777777777777888888888888888888888888888776
No 275
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=87.21 E-value=7.7 Score=26.72 Aligned_cols=76 Identities=12% Similarity=-0.018 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH---HHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTF---HILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIF 108 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 108 (144)
.|..- ..+.+.|++++|...|++....-..+ ...- -.+..++.+.+++++|...+++..+....-...-+...+.
T Consensus 35 ~Y~~A-~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATA-QQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHH-HHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 44433 34466899999999999998753322 2222 3456778899999999999999987532222233444444
Q ss_pred H
Q 045403 109 H 109 (144)
Q Consensus 109 ~ 109 (144)
+
T Consensus 113 g 113 (243)
T PRK10866 113 G 113 (243)
T ss_pred H
Confidence 4
No 276
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=87.09 E-value=2.6 Score=22.39 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=8.9
Q ss_pred HHHHHHHHhCcHHHHHHHHHHH
Q 045403 70 ILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~m 91 (144)
.+|.++...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444433
No 277
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.84 E-value=5.4 Score=28.56 Aligned_cols=101 Identities=11% Similarity=0.038 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCC-------CC---------HHHHHHHHHHHHHhCcHHHHHHHH
Q 045403 26 DKYDVVLLNSMLCAYCRTG-DMESVIHVMRKLDELAIS-------PD---------YNTFHILIKYFRKEKMYMLAYRTM 88 (144)
Q Consensus 26 ~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~-------p~---------~~~~~~li~~~~~~g~~~~a~~~~ 88 (144)
+..|+.-|-+.++-..... .++++-++....+..=++ -| ..+++..-..|.++|.+.+|.++.
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~ 302 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLH 302 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4456666666666554433 355555555544321110 01 123566677899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 89 VDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 89 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+...+.. +.+...+-.++..+...||-..+.+-++++.
T Consensus 303 qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 303 QRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 9988754 5677788899999999999777776666554
No 278
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.75 E-value=9.4 Score=27.26 Aligned_cols=117 Identities=10% Similarity=0.084 Sum_probs=76.7
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCc
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKM 80 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 80 (144)
..+|...|+++.|..++..+...--......-..-|..+.+.....+..++-.+.-+. | |...--.+-..+...|+
T Consensus 175 a~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~ 251 (304)
T COG3118 175 AECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGR 251 (304)
T ss_pred HHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCC
Confidence 4578889999999999999875433323233233455555555555555555555543 6 66677788888999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHH
Q 045403 81 YMLAYRTMVDMHKK-GHQPEEELCSSLIFHLGKMRAHSEALC 121 (144)
Q Consensus 81 ~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 121 (144)
.+.|.+.+-.+.+. --.-|...-..++..|.-.|.-|.+-.
T Consensus 252 ~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 252 NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 99988876666533 223455666777887777775554333
No 279
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.72 E-value=4.9 Score=23.94 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=24.2
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 40 YCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
+..+|+|++|..+.+.+ +-||...|-++-. .+.|..+....-+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 44455555555555444 2355555554432 24455454444455554443
No 280
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.41 E-value=8.6 Score=26.46 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 91 (144)
|.+.-|..+.+.+...++.....+=++... -|.-+-..+++.++..|++++|..-++-.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 345567778888899999999887766522 36667788899999999999986654443
No 281
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.18 E-value=12 Score=27.77 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=42.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC-CC-C-CHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 36 MLCAYCRTGDMESVIHVMRKLDELA-IS-P-DYNTFHILIKYFRK---EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~g-~~-p-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
++-+|-...+++...++.+.+..-- +. + ....--...-++.+ .|+-++|.+++.......-.++..++..+-..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3335777777888888887776531 10 1 11111122233444 67778888887775544445666666665544
Q ss_pred H
Q 045403 110 L 110 (144)
Q Consensus 110 ~ 110 (144)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 4
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.17 E-value=2.1 Score=19.14 Aligned_cols=27 Identities=11% Similarity=-0.049 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 045403 67 TFHILIKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 93 (144)
+|..+-.+|...|++++|...+++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666554
No 283
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.06 E-value=4.7 Score=25.09 Aligned_cols=46 Identities=4% Similarity=0.052 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+..+.++.+....+.|++.+..+-+.++.+-+|+..|.++++-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3556677777788999999999999999999999999999998864
No 284
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.81 E-value=5.5 Score=23.72 Aligned_cols=87 Identities=13% Similarity=-0.028 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 45 DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
..++|..|-+-+...+.. ...+--+-+..+...|++++|..+.+.+ +.||...|-+|-. -+.|..++...-+-
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 357888888887765432 3334444455677889999999877666 6899998877654 47888888888887
Q ss_pred HhhhcCCCCcHHHH
Q 045403 125 VKDIAKDRCAMPFM 138 (144)
Q Consensus 125 ~m~~~~~~~~~~~~ 138 (144)
+|..+..+....|.
T Consensus 93 rla~sg~p~lq~Fa 106 (115)
T TIGR02508 93 RLAASGDPRLQTFV 106 (115)
T ss_pred HHHhCCCHHHHHHH
Confidence 78766655554443
No 285
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.75 E-value=2.8 Score=20.69 Aligned_cols=22 Identities=18% Similarity=-0.164 Sum_probs=12.3
Q ss_pred HHHHHhccCChHHHHHHHHHhh
Q 045403 106 LIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 106 l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+..+|.+.|+.+.|.++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4455555555555555555554
No 286
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.68 E-value=3.9 Score=23.06 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHhhhCCCCC-C-HHHHHHHHHHHHHhCcHHHHHHH
Q 045403 42 RTGDMESVIHVMRKLDELAISP-D-YNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~g~~p-~-~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
...+-++|+.+|....+.-..| + ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778888887776553332 2 23577788888888888877664
No 287
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=85.62 E-value=14 Score=28.18 Aligned_cols=128 Identities=9% Similarity=-0.045 Sum_probs=83.3
Q ss_pred hhhhhccCCHHHHHHHHHHHHhc-CCCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAK-YDKYDV-----VLLNSMLCAYCR----TGDMESVIHVMRKLDELAISPDYNTFHIL 71 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~-~~~p~~-----~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 71 (144)
+...+=.||-+.+.+++.+-.+. ++.... -.|...+..++. ....+.+.+++..+.++ -|+..-|...
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~ 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFF 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 34444568888888888875543 233222 345555555544 34678999999999874 4887777555
Q ss_pred HH-HHHHhCcHHHHHHHHHHHHH--CCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 72 IK-YFRKEKMYMLAYRTMVDMHK--KGHQ-PEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 72 i~-~~~~~g~~~~a~~~~~~m~~--~~~~-~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
-. .+...|++++|.+.|++... ...+ .....+=-+.-++.-.+++++|.+.|.++.+...
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 43 36668999999999997653 1111 1112222344456778899999999999986433
No 288
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=85.60 E-value=2.6 Score=30.03 Aligned_cols=29 Identities=14% Similarity=0.398 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 045403 34 NSMLCAYCRTGDMESVIHVMRKLDELAIS 62 (144)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 62 (144)
|..|+...+.|++++|+.++++.++.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 35555555555555555555555555543
No 289
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.52 E-value=7 Score=24.65 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=64.3
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC-CCCCCHH---HHHHHHHHHhccC
Q 045403 39 AYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK-GHQPEEE---LCSSLIFHLGKMR 114 (144)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~---~~~~l~~~~~~~g 114 (144)
+.++.|+++.|.+.|.....- .+-+...||.-..++...|+.++|++=+++..+. |-+ +.. .|..--..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 467889999999999987764 2347789999999999999999999888877753 322 322 3333344567788
Q ss_pred ChHHHHHHHHHh
Q 045403 115 AHSEALCLQHVK 126 (144)
Q Consensus 115 ~~~~a~~l~~~m 126 (144)
+-+.|..=|+.-
T Consensus 130 ~dd~AR~DFe~A 141 (175)
T KOG4555|consen 130 NDDAARADFEAA 141 (175)
T ss_pred chHHHHHhHHHH
Confidence 888888777753
No 290
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.37 E-value=11 Score=26.79 Aligned_cols=102 Identities=16% Similarity=0.060 Sum_probs=72.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRT---GDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 78 (144)
.+|.+.|+++.|..-|....+...+ |...+..+-.++... .+-.++..+|++..+. .| |..+-.-+--.+...
T Consensus 164 ~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~lLA~~afe~ 240 (287)
T COG4235 164 RAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSLLAFAAFEQ 240 (287)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHc
Confidence 4677889999999999998765332 555555555554433 3567899999999874 45 455566666679999
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 79 KMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
|++.+|...|+.|.+.. |....+..+|..
T Consensus 241 g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 241 GDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred ccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 99999999999999763 444445555443
No 291
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=85.32 E-value=3.3 Score=20.74 Aligned_cols=30 Identities=7% Similarity=0.145 Sum_probs=13.5
Q ss_pred hCcHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045403 78 EKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 107 (144)
.|-++++..++++|.+.|+..+...+..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344444444444444444444444444433
No 292
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=85.20 E-value=13 Score=27.26 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=50.7
Q ss_pred hhccCCHHHHHHHHHHHHhc---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCHHH-HHHHH-
Q 045403 5 FCRGGCFEEAKQLARDFEAK---YDKYDVVLLN--SMLCAYCRTGDMESVIHVMRKLDE-----LAISPDYNT-FHILI- 72 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~-~~~li- 72 (144)
.-+.++.++|.+.++++... .-.|+.+.|. .+.+.+...|+..++.+++.+.++ .|+.|++++ |..+-
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 34556888888888888753 2345665554 566667788899999888888877 678776654 33333
Q ss_pred HHHHHhCcHH
Q 045403 73 KYFRKEKMYM 82 (144)
Q Consensus 73 ~~~~~~g~~~ 82 (144)
+.|...|++.
T Consensus 165 qYyk~~~d~a 174 (380)
T KOG2908|consen 165 QYYKKIGDFA 174 (380)
T ss_pred HHHHHHHhHH
Confidence 2333444443
No 293
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=85.05 E-value=5.4 Score=22.94 Aligned_cols=66 Identities=12% Similarity=-0.053 Sum_probs=40.9
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 045403 49 VIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (144)
Q Consensus 49 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 120 (144)
+.++++.+.+.|+ .+......+-.+-...|+.+.|..++..+. .| | .-|..+++++-+.|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 5566677777775 444444444444445677777777777776 32 3 36677777777776665544
No 294
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=84.88 E-value=4.2 Score=21.58 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
.++.+.++.+.++.. ..|-.-.=.+|.++.+.|++++|.+..+++.+
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666666666553 55666666889999999999999999988865
No 295
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.80 E-value=3.6 Score=20.63 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=27.2
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 045403 40 YCRTGDMESVIHVMRKLDELAISPDYNTFHILIKY 74 (144)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 74 (144)
..+.|-.+++..++++|.+.|+..+...+..+++-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 35667777888899999888888888877776653
No 296
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=84.07 E-value=7 Score=31.33 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=52.7
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHH--HHHHH-HHhhhCCCCCCHHHHHHHHHHH
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAK--YDKYDVVLLNSMLCAYCRTGDMES--VIHVM-RKLDELAISPDYNTFHILIKYF 75 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~--a~~~~-~~m~~~g~~p~~~~~~~li~~~ 75 (144)
|+.+|..+|++-++.++++.+... |-..-...||..|+-+.++|.++- +.+=. +.++...+.-|.-||..|+.+.
T Consensus 34 l~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~s 113 (1117)
T COG5108 34 LFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQAS 113 (1117)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Confidence 467899999999999999988753 334445678889999999986532 11111 2223334667888888888776
Q ss_pred HH
Q 045403 76 RK 77 (144)
Q Consensus 76 ~~ 77 (144)
..
T Consensus 114 ln 115 (1117)
T COG5108 114 LN 115 (1117)
T ss_pred cC
Confidence 54
No 297
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=84.05 E-value=3.4 Score=29.45 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=36.7
Q ss_pred CCCCHHH-HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045403 61 ISPDYNT-FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107 (144)
Q Consensus 61 ~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 107 (144)
+.||..+ |+.-|+.-.+.||+++|++++++.++.|..--..+|-..+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4465555 6799999999999999999999999998766666664443
No 298
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.48 E-value=17 Score=27.36 Aligned_cols=24 Identities=4% Similarity=-0.291 Sum_probs=17.5
Q ss_pred HHHHHHhccCChHHHHHHHHHhhh
Q 045403 105 SLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 105 ~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.-..++.+.|++.++-++++.+-+
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHh
Confidence 345667788888888888887765
No 299
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.40 E-value=18 Score=27.52 Aligned_cols=110 Identities=15% Similarity=0.045 Sum_probs=59.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh-------hCC----------CCCCHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLD-------ELA----------ISPDYNTFH 69 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~g----------~~p~~~~~~ 69 (144)
-+|+++++.+..+.-.-- +.-+....+.+++.+-+.|..+.|+.+-.+-. +.| -..+...|.
T Consensus 273 ~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~ 351 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWK 351 (443)
T ss_dssp HTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHH
T ss_pred HcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHH
Confidence 356777766665411110 01124457788888888888888777654321 111 135677888
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 70 ILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
.|-+.....|+++.|.+++++.. -|..|+-.|.-.|+.+...++.+.-
T Consensus 352 ~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 352 QLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 88888888888888888887764 2344444455555555555554443
No 300
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=83.08 E-value=9.3 Score=24.11 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 16 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
++.+.+++.|++++. ---.+++.+.+.++.-.|.++|+++.+.+...+..|.-..++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344556667776443 3456778888887778899999999988777777776666777777663
No 301
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=83.03 E-value=6.3 Score=23.55 Aligned_cols=27 Identities=19% Similarity=-0.018 Sum_probs=25.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 102 LCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 102 ~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
-|..|+..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999876
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.94 E-value=9.9 Score=24.31 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 045403 8 GGCFEEAKQLARDFEAKYDK-YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 60 (144)
.++.+++..+++.|.-.-+. |...++.. ..+..+|++++|..+|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 56677777777777653221 22222222 23456777788888887777654
No 303
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=82.93 E-value=1.5 Score=27.32 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045403 79 KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL 110 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 110 (144)
|.-.+|..+|..|.+.|-.|| .|+.|+...
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 344457889999999998888 677777653
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.90 E-value=11 Score=24.96 Aligned_cols=99 Identities=13% Similarity=0.000 Sum_probs=74.6
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCA---YCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
..++.|+...|..-|++.-+....|-+.-=..-+++ +..+|-++.+..-.+-+...|-+.....-..|--+--+.|+
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 456789999999999999876666665533334433 46788999999988888777765666667777777779999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH
Q 045403 81 YMLAYRTMVDMHKKGHQPEEEL 102 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~ 102 (144)
+.+|.++|.++......|....
T Consensus 183 ~a~A~~~F~qia~Da~aprnir 204 (221)
T COG4649 183 FAKAKSWFVQIANDAQAPRNIR 204 (221)
T ss_pred hHHHHHHHHHHHccccCcHHHH
Confidence 9999999999986544554433
No 305
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=82.74 E-value=5.2 Score=23.68 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHCCC
Q 045403 34 NSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK--MYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~ 96 (144)
..+|.-|...++.++|...+.++... .--......++..+...+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 34555666667777777777665432 111122333333333332 22335556666665554
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.49 E-value=3.2 Score=18.31 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRKLD 57 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~ 57 (144)
|..+-..+...|++++|...|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444555555555554443
No 307
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.26 E-value=21 Score=27.70 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=73.6
Q ss_pred CCHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 9 GCFEEA-KQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 9 g~~~~a-~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
|++..| .+++..+....-.|+.+..-+.| +..-|+++.+...+...... +.....+-.+++...-+.|++++|...
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 444443 45566666555556665544443 45668888888888775432 345667888888888899999999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 88 MVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 88 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
-+-|....+.-. .+.+...-.--..|-+|++...++++-
T Consensus 380 a~~~l~~eie~~-ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 380 AEMMLSNEIEDE-EVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHhccccCCh-hheeeecccHHHHhHHHHHHHHHHHHh
Confidence 888876655333 222222222245677888888777754
No 308
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.02 E-value=7.4 Score=28.66 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
+-|.+.|.+++|.++|.+-.. +.| |.+++..-..+|.+.+.+..|..=
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 347789999999999988654 456 889999999999999887765543
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=81.92 E-value=12 Score=30.31 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---------------CCCHHHHHHHHH
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI---------------SPDYNTFHILIK 73 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------------~p~~~~~~~li~ 73 (144)
|.+++|.++|-+|-.. ...|..+.+-|++-.+.++++.=. .+. -.+...|....+
T Consensus 748 g~feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777666533 123445555566665555554310 000 012223444555
Q ss_pred HHHHhCcHHHHHHHH------HHHHH--CCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 74 YFRKEKMYMLAYRTM------VDMHK--KGHQPEEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 74 ~~~~~g~~~~a~~~~------~~m~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
.|...|+.+.-.+.+ +++.. ..++-+......+.++|.+.|..++|-+.+-
T Consensus 818 yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 818 YYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 555555544433322 22221 1234455556666777777777776666554
No 310
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=81.88 E-value=11 Score=23.89 Aligned_cols=121 Identities=18% Similarity=0.065 Sum_probs=53.1
Q ss_pred hhccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYD--KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
+...|+++.|...+++...... ......+......+...++.+.+...+.+..+.........+..+-..+...++.+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 3445555555555555533111 01223333333334445555555555555544311112444555555555555555
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 83 LAYRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
.+...+...... .|+ ...+..+...+...|..+++...+.+..
T Consensus 220 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 220 EALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555432 121 2222222222224444555555555443
No 311
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=81.75 E-value=9.9 Score=23.48 Aligned_cols=113 Identities=12% Similarity=-0.003 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH---HHHHHHHHH-------h
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTF---HILIKYFRK-------E 78 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~-------~ 78 (144)
.++.-|.+++...... | -+...++.+...+---.+.++.+++....-.|..+.- +..|+.|-. .
T Consensus 3 nNp~IA~~~l~~l~~s---~---~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~ 76 (126)
T PF10155_consen 3 NNPNIAIEILVKLINS---P---NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQN 76 (126)
T ss_pred CcHHHHHHHHHHHcCC---c---hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhccccccc
Confidence 4566677777766542 2 2788888889888888899999999877655655442 223333332 2
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 79 KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
........+++.+.+.++.-....+.-+=.-|.+..++.||..+|+.+.
T Consensus 77 R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 77 RLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred chhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 2344456677888888876666666666666778889999999999765
No 312
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=81.75 E-value=16 Score=25.87 Aligned_cols=113 Identities=15% Similarity=0.096 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 8 GGCFEEAKQLARDFEAKYD----KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+..+.|.+.|++....+. ..+...-..+++...+.|..+.-..+++..... ++...-..++.+.+-..+.+.
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~ 219 (324)
T PF11838_consen 143 PECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPEL 219 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHH
T ss_pred hhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHH
Confidence 3457788888998876422 446667778888888888877777777777653 577888999999999999998
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh--HHHHHHHH
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAH--SEALCLQH 124 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~l~~ 124 (144)
..++++.....+..+....+. ++.++...+.. +.+.+.+.
T Consensus 220 ~~~~l~~~l~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 220 LKRLLDLLLSNDKVRSQDIRY-VLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHHHHCTSTS-TTTHHH-HHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccHHHHH-HHHHHhcCChhhHHHHHHHHH
Confidence 888998888754233333433 44444433333 55555555
No 313
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=81.73 E-value=2.8 Score=24.73 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=19.2
Q ss_pred HHhcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 40 YCRTGDMESVIHVMRKLDELA-ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
|...++.+...+++..+-+.- -+|....=.+.+..|++ ++.+|...+++..
T Consensus 24 y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~--~L~~A~~~~~~y~ 75 (100)
T PF08771_consen 24 YFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGR--DLQEAREWLKRYE 75 (100)
T ss_dssp HHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 334444444444443332210 02333333344444432 3444444444443
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.41 E-value=3.4 Score=17.99 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=13.3
Q ss_pred HHHHHHhCcHHHHHHHHHHHHH
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~ 93 (144)
-.++.+.|+.++|...|+++.+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3445556666666666666654
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.36 E-value=12 Score=24.18 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=32.5
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhC
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLN-SMLCAYCRTGDMESVIHVMRKLDEL 59 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~ 59 (144)
.+.++.+++..+++.+.-. .|...... .--..+..+|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4566778888888877764 33322222 2223346777888888888887664
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.23 E-value=14 Score=24.87 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHHhCcHHHHH
Q 045403 12 EEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL---AISPDYNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 12 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~ 85 (144)
+.|.+.|-++...+.--++..--.+-..|. ..+.+++..++.+..+. +-.+|+..+.+|...+.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567888888887766656666666655555 56789999999887643 33689999999999999999998875
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.15 E-value=24 Score=27.55 Aligned_cols=121 Identities=18% Similarity=0.082 Sum_probs=77.5
Q ss_pred hhccCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEA-------KYDKYDVVLLNSMLCAYCRTG-----DMESVIHVMRKLDELAISPDYNTFHILI 72 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li 72 (144)
++...+.+.|+..|+..-+ .| +....+-+-.+|.+.. +.+.|..+|..-.+.|. |+.-..-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 5677899999999998866 44 2334556666666643 66779999988888777 6666555555
Q ss_pred HHHHH-hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCChHHHHHHHHHhhhcC
Q 045403 73 KYFRK-EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLG--KMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 73 ~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~l~~~m~~~~ 130 (144)
.-.+. ..+...|.++|..-.+.|.. +..-+-+++.... -..+...|..++.+.-+..
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 44444 34677888888888877742 2222222222222 3446777777777765543
No 318
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=80.66 E-value=7 Score=23.10 Aligned_cols=61 Identities=7% Similarity=-0.086 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHhhhcC
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR--AHSEALCLQHVKDIAK 130 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~l~~~m~~~~ 130 (144)
...++..|...|+.++|...+.++... .-.......++......+ .-+....++..+...+
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 345677888889999999988887422 112223333444444332 2334555666665433
No 319
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=80.37 E-value=18 Score=25.64 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
+..-...|..+...|++..|.+++.+..+
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444556666667777777777766654
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.32 E-value=4 Score=18.06 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=10.0
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHH
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m 91 (144)
..+-..|...|+.++|...|++.
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444444444443
No 321
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=80.16 E-value=13 Score=24.03 Aligned_cols=61 Identities=8% Similarity=-0.011 Sum_probs=45.9
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 21 FEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 21 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
+++.|+.++.. =-.++..+...+..-.|.+|++.+.+.+..++..|.--.|+.+.+.|-+.
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 55667764443 34666666666777789999999999988888888888888888888543
No 322
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.85 E-value=19 Score=25.64 Aligned_cols=85 Identities=7% Similarity=0.054 Sum_probs=53.4
Q ss_pred hhhhhccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH--
Q 045403 2 ISAFCRGGCFEEAKQLARDFEA--KYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK-- 77 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 77 (144)
|.|++..++|.++....-+.-+ +.++|.+.- .-|-.|.+.+.+..+.++-..=.+.--.-+...|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 5788888999999887766654 234555444 4455577888877777766555433111222336666666554
Q ss_pred ---hCcHHHHHHHH
Q 045403 78 ---EKMYMLAYRTM 88 (144)
Q Consensus 78 ---~g~~~~a~~~~ 88 (144)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 78888887765
No 323
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=79.26 E-value=20 Score=28.86 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=25.0
Q ss_pred HHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 74 YFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+-+...+..|-++|..|-. ...++....+.+++++|+.+.++.++-
T Consensus 756 ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 756 YLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred HHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc
Confidence 33344444455555555531 123455566666667766666665543
No 324
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=79.06 E-value=2.6 Score=25.91 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNS 35 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 35 (144)
.|+.++|.++++.+..+|+.|....|..
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 5889999999999999999988877753
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=78.60 E-value=38 Score=28.31 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
.|.+++|..+|++-+. |..|=+.|-..|++++|.++-+.= ..+ .=..||..-.+.+-..+|++.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~--DRi-HLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETK--DRI-HLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhc--cce-ehhhhHHHHHHHHHhhccHHHHHHH
Confidence 3555666666655442 333344445556666666665442 112 1223444445555555666666655
Q ss_pred HHH
Q 045403 88 MVD 90 (144)
Q Consensus 88 ~~~ 90 (144)
|+.
T Consensus 881 yEK 883 (1416)
T KOG3617|consen 881 YEK 883 (1416)
T ss_pred HHh
Confidence 544
No 326
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=78.49 E-value=17 Score=24.22 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCCC--CHHHHHHH-----HHHHHhcCCHHHHHHHHHHhhh
Q 045403 11 FEEAKQLARDFEAKYDKY--DVVLLNSM-----LCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p--~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~ 58 (144)
++.|..+|+...+.-..| -....-.+ +-.|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 355666666665543332 11111122 2235556666666666666554
No 327
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=78.37 E-value=12 Score=25.24 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=44.5
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 70 ILIKYFRKEKMYMLAYRTMVDMHKKG--------------HQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~m~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
+++-.|-+.-++.+..++++.|.+.. ..+.-..-|.....|.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 45667778889999999998887542 234455678888999999999999999984
No 328
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=77.97 E-value=7.3 Score=23.16 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=33.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 36 MLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
++..+...+..-.|.++++.+.+.+..++..|.--.++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555555666678888888888777777777777777777777543
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.58 E-value=16 Score=23.56 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=50.0
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045403 32 LLNSMLCAY---CRTGDMESVIHVMRKLDELAISPDYNTFHIL-IKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107 (144)
Q Consensus 32 ~~~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 107 (144)
+.+.||..+ .+.++.+++..++.-+.-- +|.....-.+ ...+...|++++|..+++++.... |....-.+|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALl 84 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHH
Confidence 344444443 4667899999999998753 4544433222 233678999999999999987543 4444455555
Q ss_pred HHHhc
Q 045403 108 FHLGK 112 (144)
Q Consensus 108 ~~~~~ 112 (144)
..|..
T Consensus 85 A~CL~ 89 (160)
T PF09613_consen 85 ALCLY 89 (160)
T ss_pred HHHHH
Confidence 55554
No 330
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=77.12 E-value=2.5 Score=26.43 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 045403 45 DMESVIHVMRKLDELAISPDYNTFHILIKYF 75 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 75 (144)
.-..|..+|.+|.++|-+|| .|+.|+...
T Consensus 110 sk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 110 SKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred cCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34568899999999999885 577777654
No 331
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=77.08 E-value=13 Score=28.32 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=35.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE 78 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 78 (144)
-|...|+..+|.+..+++.-- .-....++-+++-+.-+.++-...++++++.-++|+ +|-+.|-++|.+.
T Consensus 518 EY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~RV 587 (645)
T KOG0403|consen 518 EYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFERV 587 (645)
T ss_pred HHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhhh
Confidence 344555666666554443211 012334555666666666655555555555555444 5555555555443
No 332
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=76.88 E-value=20 Score=24.18 Aligned_cols=106 Identities=11% Similarity=-0.055 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC---CCCCHHH
Q 045403 26 DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG---HQPEEEL 102 (144)
Q Consensus 26 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~ 102 (144)
..|++..--.|-.+..+.|++.+|...|++-..--.--|....-.+-++....++...|...++.+-+.+ -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 4577777778899999999999999999998654345688888888999999999999999999998654 2344 5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhhcCCCC
Q 045403 103 CSSLIFHLGKMRAHSEALCLQHVKDIAKDRC 133 (144)
Q Consensus 103 ~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~ 133 (144)
.-.+-..+.-.|....|..-|+...+.-++.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 5667888999999999999998877654443
No 333
>PRK11906 transcriptional regulator; Provisional
Probab=76.30 E-value=32 Score=26.26 Aligned_cols=114 Identities=9% Similarity=-0.098 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHHhCcHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN-TFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~ 86 (144)
.....+|.++-+...+.+.. |...-..+-.+..-.++++.+...|++... +.||.. +|...--.....|+.++|..
T Consensus 317 ~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 45567778887777776655 888888888888888889999999999766 456543 34444445666899999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 87 TMVDMHKKG-HQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 87 ~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
.+++..+.. .+....+...-++.|+.. -++.|.+++-.
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 999965432 122233344445567665 45666666653
No 334
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.10 E-value=15 Score=22.21 Aligned_cols=82 Identities=11% Similarity=-0.094 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 45 DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
..++|..|.+-+...+. -.+.+--+-+..+.+.|++++|.. . ......||...|-+| +-.+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl---~-~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL---L-PQCHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH---H-HTTS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH---h-cccCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 34566666666655433 223333333444555666666611 1 111234555555333 2235666666666666
Q ss_pred HhhhcCCCC
Q 045403 125 VKDIAKDRC 133 (144)
Q Consensus 125 ~m~~~~~~~ 133 (144)
++.....+.
T Consensus 94 rla~~g~~~ 102 (116)
T PF09477_consen 94 RLASSGSPE 102 (116)
T ss_dssp HHCT-SSHH
T ss_pred HHHhCCCHH
Confidence 655444433
No 335
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=75.92 E-value=20 Score=28.83 Aligned_cols=77 Identities=8% Similarity=0.033 Sum_probs=53.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHH
Q 045403 41 CRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEE-----------ELCSSLIFH 109 (144)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----------~~~~~l~~~ 109 (144)
.+...+..|-++|..|-. ...++....+.++|++|..+-+..-+. .||. .-|.-.-++
T Consensus 758 k~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred hhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHH
Confidence 334456667777777643 235667778889999999887776532 2332 235556678
Q ss_pred HhccCChHHHHHHHHHhhh
Q 045403 110 LGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 110 ~~~~g~~~~a~~l~~~m~~ 128 (144)
|.++|+-.+|..+++++.+
T Consensus 827 fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHhcchHHHHHHHHHhhh
Confidence 9999999999999998864
No 336
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.70 E-value=32 Score=26.02 Aligned_cols=86 Identities=3% Similarity=-0.147 Sum_probs=49.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCC-H----------HHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYD-V----------VLLNSMLCAYCRTGDMESVIHVMRKLDEL---AISPDYNTFHILI 72 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~-~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li 72 (144)
-.++.+.|+..|++-...++... . ..|..--+-..+.|.+.+|.++|.+-... +++|+...|...-
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 34566677777776655432211 1 11111122235667777787777776643 4556666676666
Q ss_pred HHHHHhCcHHHHHHHHHHHH
Q 045403 73 KYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~ 92 (144)
....+.|+.++|..--++..
T Consensus 295 ~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhhcccCCchhhhhhhhhhh
Confidence 77777777777766555554
No 337
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=75.47 E-value=20 Score=23.38 Aligned_cols=54 Identities=11% Similarity=0.271 Sum_probs=39.2
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 49 VIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 49 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
..+....+.+.|+.|+...+..+++.+.+.|+.. .+.++.+.++-+|.......
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~ 66 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQ 66 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHH
Confidence 3455666677899999999999999999999855 44555555566665544443
No 338
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.41 E-value=18 Score=22.96 Aligned_cols=82 Identities=9% Similarity=0.017 Sum_probs=59.5
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYD-----KYDVVLLNSMLCAYCRTGD-MESVIHVMRKLDELAISPDYNTFHILIKYFR 76 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 76 (144)
+..+..+++....++++.+..-.. ..+-.+|.+++++.+...- --.+..+|+-|++.+.+++..-|..+|+++.
T Consensus 47 ~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 47 NHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred HHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 334455666777777776643211 2355689999999987765 5568899999999889999999999999997
Q ss_pred HhCcHHHH
Q 045403 77 KEKMYMLA 84 (144)
Q Consensus 77 ~~g~~~~a 84 (144)
+....+..
T Consensus 127 ~g~~~~~~ 134 (145)
T PF13762_consen 127 RGYFHDSL 134 (145)
T ss_pred cCCCCcch
Confidence 76554433
No 339
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=75.20 E-value=18 Score=22.82 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=18.3
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC
Q 045403 53 MRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 53 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 96 (144)
.+.+++.|++++.- -..+++.+...++.-.|.++++++.+.+.
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 33444444443221 22334444444444445555555554443
No 340
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=75.00 E-value=11 Score=20.31 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 045403 28 YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI 61 (144)
Q Consensus 28 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 61 (144)
|+...++-++...++..-.+.+...+++..++|.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~ 39 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS 39 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444455555555555555555555555555544
No 341
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=74.93 E-value=31 Score=25.37 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHH--HHHHHHHHhCcHHHHHHHHHHHHH-----CCCCCCHH
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDEL---AISPDYNTFH--ILIKYFRKEKMYMLAYRTMVDMHK-----KGHQPEEE 101 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 101 (144)
.++...-+.++.++|.++++++++. -=.||.+.|. ....++...||..++.+.+++.++ .++.|+.+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3344444556777777777777643 1125555543 334445567777777777777765 45555433
No 342
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.68 E-value=32 Score=25.46 Aligned_cols=117 Identities=10% Similarity=-0.077 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL---AISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
+|+..+|...|+++.+. .+.|...++--=+++.-.|+.+.-...+.+..-. +++-.+.......-++.++|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45666666666666654 3336666666666666666666666666555432 2211222222333334456666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
++.-++-.+.+ +.|.-..-+....+--.|++.++.+...+-
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66655554432 233333334444444556666666655543
No 343
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=74.33 E-value=5.8 Score=18.16 Aligned_cols=21 Identities=5% Similarity=0.313 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHH
Q 045403 46 MESVIHVMRKLDELAISPDYNTF 68 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~~~ 68 (144)
++.|..||++.... .|+..+|
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHH
Confidence 45555555555542 3544444
No 344
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=74.28 E-value=11 Score=20.25 Aligned_cols=51 Identities=6% Similarity=-0.013 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045403 62 SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKM 113 (144)
Q Consensus 62 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 113 (144)
.|+...++.++..+++..-++++...+.+..+.|. .+..+|.--++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 47778899999999999999999999999998884 5677777777766653
No 345
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=73.77 E-value=6.6 Score=23.64 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC
Q 045403 34 NSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 79 (144)
..++..+...+..-.|.++++.+.+.|...+..|.---|+.+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 4566666666666777788888877777777777666666666666
No 346
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.63 E-value=17 Score=21.91 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMV 89 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 89 (144)
.-++|..+.+.+...+-. ...+--+.+..+..+|+|++|... - .....||...|-++- -.+.|..+.+...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~--~--~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLL--P--QCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHH--H--TTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHh--c--ccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 467899999999876542 333334555567789999999222 1 122348989887774 458899999999999
Q ss_pred HHHHCCCCCCHHHHHH
Q 045403 90 DMHKKGHQPEEELCSS 105 (144)
Q Consensus 90 ~m~~~~~~~~~~~~~~ 105 (144)
++...| .|....|..
T Consensus 94 rla~~g-~~~~q~Fa~ 108 (116)
T PF09477_consen 94 RLASSG-SPELQAFAA 108 (116)
T ss_dssp HHCT-S-SHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHH
Confidence 887655 344444443
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.54 E-value=32 Score=24.89 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK-----KGHQPEEELCS 104 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~ 104 (144)
.+.+..-+.|.++|.+.+|..+-++...-.. .++..|-.++..+...||--.+.+-++.+.+ .|+..+-.+++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 3455666788999999999999999877533 6888899999999999997777777777642 46655554443
No 348
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=73.30 E-value=20 Score=22.53 Aligned_cols=51 Identities=18% Similarity=0.016 Sum_probs=20.2
Q ss_pred HHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 76 RKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
...++.+.+...+.+..+.........+..+-..+...++.+.+...+...
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 334444444444444443211002333444444444444444444444443
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.19 E-value=14 Score=20.81 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=26.1
Q ss_pred HhCcHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHH
Q 045403 77 KEKMYMLAYRTMVDMHKKGHQPEE--ELCSSLIFHLGKMRAHSEALCLQ 123 (144)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~l~ 123 (144)
...+.+.|+..+....+.-..+.. .+...++.+|+..|++.++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666543322221 14445667777777776665543
No 350
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=73.08 E-value=38 Score=25.66 Aligned_cols=87 Identities=10% Similarity=-0.009 Sum_probs=64.6
Q ss_pred hhccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HH--HHHHHHHHHHh
Q 045403 5 FCRGGCFEEAKQLARDFEAKY---DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY-NT--FHILIKYFRKE 78 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~--~~~li~~~~~~ 78 (144)
..+.|.+.+|.+.|.+..... +.|+...|...-.+..+.|+.++|..--++..+ .|. .. +..--.++.-.
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHH
Confidence 467899999999999988753 457778888888889999999999988877665 332 22 23333445557
Q ss_pred CcHHHHHHHHHHHHHCC
Q 045403 79 KMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~ 95 (144)
++|++|.+-+++..+..
T Consensus 335 e~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 78888888888877543
No 351
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=72.94 E-value=26 Score=26.61 Aligned_cols=121 Identities=15% Similarity=0.021 Sum_probs=83.8
Q ss_pred hhccCCHHHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHHHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEA----KYD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AIS-PDYNTFHILIKY 74 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~ 74 (144)
|.=.|+++.|+...++-.. -|- ......++.+-+++.-.|+++.|.+.|..-..- |-+ ...-++-++-+.
T Consensus 205 yYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt 284 (639)
T KOG1130|consen 205 YYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT 284 (639)
T ss_pred eeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH
Confidence 4446889999887765332 122 234577888999999999999999988775432 221 122346677788
Q ss_pred HHHhCcHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 75 FRKEKMYMLAYRTMVDMHK----KG-HQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
|-...++.+|+.++.+-.. .+ ..-....+=+|-.+|...|..++|+...+.
T Consensus 285 ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 285 YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8888889999888776542 11 112344667788999999999999888775
No 352
>PF13934 ELYS: Nuclear pore complex assembly
Probab=72.61 E-value=28 Score=23.80 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 045403 36 MLCAYCRTGDMESVIHVMRK 55 (144)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~ 55 (144)
++.++..+|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444444444444444
No 353
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.48 E-value=6.8 Score=16.75 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSML 37 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li 37 (144)
|+++.|.++|+++....+ -+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHH
Confidence 355666666666654422 3444444443
No 354
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=71.81 E-value=15 Score=20.35 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=7.1
Q ss_pred hhccCCHHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLAR 19 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~ 19 (144)
.++.|+++-+..+++
T Consensus 4 A~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE 18 (89)
T ss_dssp HHHTTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 345555554444433
No 355
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.72 E-value=30 Score=23.85 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMH----KKGH-QPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
--.+-.-|.+.|++++|.++++.+. +.|+ .+...+...+..++.+.|+.+....+.=+|.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3455666888999999999999885 2454 3456667778888889999988777665543
No 356
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=70.65 E-value=4.7 Score=30.47 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=43.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH----HHHHHHHHHHhC
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT----FHILIKYFRKEK 79 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g 79 (144)
+..++++|+++-++..+.|.+.++ |-.-.|-+++.++.++|++||..| ....+.+|+-.|
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~p~SI-------------gl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G 278 (561)
T COG2987 215 IAETLDEALALAEEATAAGEPISI-------------GLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVG 278 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCCceEE-------------EEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCc
Confidence 356788888888888887766443 334567888999999999998876 455566666655
No 357
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=69.36 E-value=50 Score=25.44 Aligned_cols=118 Identities=16% Similarity=0.123 Sum_probs=80.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hh---cCCHHHHHHHHHHhhhCCCCCCHHH----HHHHHHH--
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAY----CR---TGDMESVIHVMRKLDELAISPDYNT----FHILIKY-- 74 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~---~~~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~-- 74 (144)
.++-++|.++++...+- .+.|..+=|+..... .+ ...+.+..++-+-..+.|+.|-.+. -|.+-++
T Consensus 393 g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 393 GQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 34578899998887764 234666666555432 22 2235566666666777888764443 3333333
Q ss_pred HHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 75 FRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.-..|++.++.-.-.-+.+ +.|.+.+|..+--+.....++++|..++..++-
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 4457888877655555544 689999999998888999999999999998875
No 358
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=69.30 E-value=11 Score=20.72 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=25.1
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 42 RTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
..++.+.+.+++++..+.|..|.......+..+..+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 345667777777777766776766666666666655554
No 359
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.22 E-value=20 Score=20.70 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHH
Q 045403 14 AKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 14 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 85 (144)
+.++++...+.|+- +....+.+-.+-...|+.+.|..++.++. +|- ..|...+.++...|.-+.|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhhh
Confidence 45667777766654 33444444444446689999999999998 644 57889999998888766554
No 360
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=68.45 E-value=9.9 Score=22.59 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=30.5
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 46 (144)
+..+...+..-.|.++++.+.+.+...+..|---.|+.+.+.|-.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 344555566667888888888877766776666666666666643
No 361
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=68.33 E-value=39 Score=23.95 Aligned_cols=79 Identities=6% Similarity=0.091 Sum_probs=45.4
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCCHHHHHHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA-----ISPDYNTFHILIKYFR 76 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~ 76 (144)
|..+...|++..|++++.+..+.- . ....|+.+=. -..++++-.....++.+.. ...|+..|..++.+|.
T Consensus 134 l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~---L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~ 208 (291)
T PF10475_consen 134 LQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRH---LSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQ 208 (291)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345667899999999998877531 1 1111111111 1112333333333322211 1589999999999999
Q ss_pred HhCcHHHHH
Q 045403 77 KEKMYMLAY 85 (144)
Q Consensus 77 ~~g~~~~a~ 85 (144)
..|+...+.
T Consensus 209 lLgk~~~~~ 217 (291)
T PF10475_consen 209 LLGKTQSAM 217 (291)
T ss_pred HHhhhHHHH
Confidence 999876544
No 362
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.97 E-value=53 Score=25.35 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
...|+.-|...|++.+|+++++++.-- +-.....+.+++-+.-+.|+-.+.++++++.-.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 456788888899999999998887411 112567888888888888888888888776654
No 363
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=67.65 E-value=6.9 Score=21.49 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=32.7
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDM 46 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 46 (144)
.-.|+.+.+.+++++..+.|.+|.....+.+..+..+.|+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999989998888888788877766643
No 364
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.49 E-value=37 Score=23.23 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=56.7
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
+.++|++++|.+-|......-++-.. +.|..---++.+.+.++.|.+--.+.++-+. -......--..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhhh
Confidence 45678888888888888776443332 4555555667777777777776666655322 122223333456777777
Q ss_pred HHHHHHHHHHHHHC
Q 045403 81 YMLAYRTMVDMHKK 94 (144)
Q Consensus 81 ~~~a~~~~~~m~~~ 94 (144)
+++|+.=++++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888777777654
No 365
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.82 E-value=50 Score=24.47 Aligned_cols=20 Identities=30% Similarity=0.170 Sum_probs=10.3
Q ss_pred HHHHhCcHHHHHHHHHHHHH
Q 045403 74 YFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~ 93 (144)
+-.+.|+..+|.+.+.++.+
T Consensus 284 CARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhh
Confidence 33445555555555555543
No 366
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=66.66 E-value=28 Score=21.56 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=11.3
Q ss_pred HHHHHHHH--HHhhhCCCCCC
Q 045403 46 MESVIHVM--RKLDELAISPD 64 (144)
Q Consensus 46 ~~~a~~~~--~~m~~~g~~p~ 64 (144)
+|+|..+| +++.++||.||
T Consensus 101 FDeARliy~~~~f~~NgI~pd 121 (128)
T PF09435_consen 101 FDEARLIYTERRFKKNGIGPD 121 (128)
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 66666666 33446666665
No 367
>PRK09857 putative transposase; Provisional
Probab=66.24 E-value=45 Score=23.78 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+..++......++.++..++++.+.+. ........-++..-+.+.|..+++.++..+|..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~ 268 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLE 268 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555545555555555555555543 222333333445555555655566666666653
No 368
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=66.01 E-value=89 Score=27.09 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHH
Q 045403 27 KYDVVLLNSMLCAYC----RTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEEL 102 (144)
Q Consensus 27 ~p~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 102 (144)
.|+...+.....+|+ +..++++|--.|...-+ ..--+.+|..+|+|++|..+-.++... -+...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 456655555554444 34566666666655432 133567777788888877777766421 11111
Q ss_pred --HHHHHHHHhccCChHHHHHHHHH
Q 045403 103 --CSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 103 --~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
-..|..-+...|++-+|-++..+
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHH
Confidence 13445555555555555555443
No 369
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=65.80 E-value=44 Score=23.50 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=64.0
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CC-----------CCCHHHHHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AI-----------SPDYNTFHILIK 73 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~-----------~p~~~~~~~li~ 73 (144)
.+..+.+-..++.+-.+.++++.+......+| +...|++.+|...++.-... |. .|.+.....++.
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 34444455556666666666665554444443 34578888888888776543 32 466666667776
Q ss_pred HHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 74 YFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
.| ..+++++|.+++.++-+.|..|.. ..+.++..
T Consensus 248 ~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv 281 (333)
T KOG0991|consen 248 AC-LKRNIDEALKILAELWKLGYSPED-IITTLFRV 281 (333)
T ss_pred HH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Confidence 65 557789999999999888887754 33445555
No 370
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=65.02 E-value=7.5 Score=29.77 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH----HHHHHHHHHHhC
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT----FHILIKYFRKEK 79 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g 79 (144)
..++++|++..++.++.+-+.+ .+-.-.|.++|.++.++|+.||..| ....+.+|.-.|
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g 269 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPIS-------------IGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEG 269 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceE-------------EEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCC
Confidence 4678888888888887766633 2345567888999999999888876 344455566655
No 371
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.40 E-value=56 Score=24.24 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=23.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHhhh
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVV--LLNSMLCAY--CRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~--~~~~~~~~a~~~~~~m~~ 58 (144)
+.+++..|.++|+++... ++++.. .+..+..+| ...-++.+|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555555544 333332 233333332 233445555555555443
No 372
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=64.27 E-value=53 Score=23.92 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 51 HVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 51 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
++|..|++.++.|.-.+|.=+.-.+...=.+.+...+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 445555555555555554444444444444445555555554
No 373
>PRK05414 urocanate hydratase; Provisional
Probab=64.08 E-value=7.7 Score=29.81 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH----HHHHHHHHHHhC-cHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT----FHILIKYFRKEK-MYM 82 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g-~~~ 82 (144)
..++++|++..++.++.+-+.+ .|-.-.|.++|.++.++|+.||..| ....+.+|.-.| .++
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~e 282 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEPLS-------------IGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLE 282 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCceE-------------EEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHH
Confidence 4678888888888887766533 3345567888999999999998876 333444666666 344
Q ss_pred HH
Q 045403 83 LA 84 (144)
Q Consensus 83 ~a 84 (144)
++
T Consensus 283 e~ 284 (556)
T PRK05414 283 EA 284 (556)
T ss_pred HH
Confidence 43
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.05 E-value=52 Score=23.67 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=84.1
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhc---CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCCCHHHHHH
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAK---YD--KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-----AISPDYNTFHI 70 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~~~~~~~ 70 (144)
||....+.|++++..+-+.+|... .+ ..+..+.|++++..+...+.+....+|+.-.+. +-+.=..|-+.
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 355667788888888888887532 22 346678888888888777777776666554321 11111234456
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHC-----CC------CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHH
Q 045403 71 LIKYFRKEKMYMLAYRTMVDMHKK-----GH------QPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMP 136 (144)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~m~~~-----~~------~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 136 (144)
+-+.|...+++.+..++++++.+. |- ..-..+|..=|..|....+-.+...++++...-+-..|.+
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 667777777877777777777642 10 1123467777777777777776667777644333333333
No 375
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=63.06 E-value=50 Score=23.17 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH---HHhCcHHHHHHH
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYF---RKEKMYMLAYRT 87 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~a~~~ 87 (144)
.++|.++.+.+...... ...++-.-|+.+.+.++.+++.+++.+|...-. .....+...+..+ .... ...+...
T Consensus 103 ~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~l~~i~~l~~~~-~~~a~~~ 179 (278)
T PF08631_consen 103 VEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSILHHIKQLAEKS-PELAAFC 179 (278)
T ss_pred HHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHhhC-cHHHHHH
Confidence 44566677777655443 345555666666668888888888888887521 1234444444444 3333 3455666
Q ss_pred HHHHHHCCCCCCH
Q 045403 88 MVDMHKKGHQPEE 100 (144)
Q Consensus 88 ~~~m~~~~~~~~~ 100 (144)
++.+...-+.|..
T Consensus 180 ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 180 LDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhCCCh
Confidence 6666544444444
No 376
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=62.80 E-value=32 Score=20.93 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=25.1
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 70 ILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
++|+...++...++|+.+++-|.++| ..+...-+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45677778888888899988888877 3444443333
No 377
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=62.50 E-value=64 Score=24.24 Aligned_cols=121 Identities=11% Similarity=0.017 Sum_probs=75.3
Q ss_pred hhhccCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCHH-HHH----
Q 045403 4 AFCRGGCFEEAKQLARDFEAK-----YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE----LAISPDYN-TFH---- 69 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~-~~~---- 69 (144)
++.-.+.++++.+-|+...+- .......+|-.+-..|.+-.++++|.-+..+..+ .|++ |.. -|.
T Consensus 131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~l 209 (518)
T KOG1941|consen 131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSL 209 (518)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHH
Confidence 455567788888888876543 1223446788899999999999988776655432 2332 222 122
Q ss_pred -HHHHHHHHhCcHHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 70 -ILIKYFRKEKMYMLAYRTMVDMH----KKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 70 -~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
.|--++...|.+-.|.+.-++-. +.|-.+. ......+.+.|...|+.+.|+.-+++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 23334555666655655555543 3443332 23445678889999999998887775
No 378
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.20 E-value=11 Score=15.20 Aligned_cols=25 Identities=16% Similarity=-0.091 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
|..+-..+...|+.+.|...+.+..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555566666665555554
No 379
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.10 E-value=25 Score=25.91 Aligned_cols=12 Identities=17% Similarity=-0.006 Sum_probs=5.5
Q ss_pred HHHHHHhcCCHH
Q 045403 36 MLCAYCRTGDME 47 (144)
Q Consensus 36 li~~~~~~~~~~ 47 (144)
.+...+..|+.+
T Consensus 38 pL~~A~~~~~~~ 49 (413)
T PHA02875 38 PIKLAMKFRDSE 49 (413)
T ss_pred HHHHHHHcCCHH
Confidence 334444555544
No 380
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=62.05 E-value=70 Score=24.52 Aligned_cols=59 Identities=8% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 045403 16 QLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK 77 (144)
Q Consensus 16 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 77 (144)
++|..+++..+.||...+.-+...|.+.=-+|-|.+|++-....|- ++.|.+.+..+-.
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdge---eFlfr~~lgIlkl 518 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGE---EFLFRTALGILKL 518 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecch---HHHHHHHHHHHHH
Confidence 4555566667889999999999999998888999999988877643 4555555544433
No 381
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.54 E-value=74 Score=24.64 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCH
Q 045403 67 TFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEE 100 (144)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 100 (144)
....++++....+....+..+++++.+.|..|..
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 3445555554444455677777777777765543
No 382
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=61.52 E-value=76 Score=24.77 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 47 ESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH-KKGHQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 47 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
.+...+|++...+ ..-|...|..-++-+-+.+...+...+|.+|. .++..||..++.+.=.- -..-.++.|..+|.+
T Consensus 88 ~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wef-e~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEF-EINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHH-hhccchHHHHHHHHH
Confidence 4455556555433 33478888888888888887888888888887 45555665555443222 222237788888776
Q ss_pred hh
Q 045403 126 KD 127 (144)
Q Consensus 126 m~ 127 (144)
=.
T Consensus 166 gL 167 (568)
T KOG2396|consen 166 GL 167 (568)
T ss_pred Hh
Confidence 43
No 383
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=61.37 E-value=29 Score=21.63 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCC
Q 045403 63 PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQ 97 (144)
Q Consensus 63 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 97 (144)
+|.+..+.+|-.+ -.|+++.|..+.....++|..
T Consensus 47 qd~Vl~~~mvW~~-D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 47 QDDVLMTVMVWLF-DVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred cCchHHhhHhhhh-cccCHHHHHHHHHHHHHcCCC
Confidence 5665555555544 778888888888888877753
No 384
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=60.44 E-value=3.4 Score=21.53 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYC 41 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 41 (144)
|--++.+.+|++|..+...|.+..||-.+.=|.
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 445678888888888877888877776665443
No 385
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=60.22 E-value=21 Score=20.98 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=38.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHH
Q 045403 41 CRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEE 101 (144)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 101 (144)
.+......+.++|..+.+.|. ++...+..+..-....++.|.- ..++.=++.-+.|+.+
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~~ 93 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDLV 93 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCchh
Confidence 344567788889999988887 4444555677777777777655 4444444455666543
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.16 E-value=33 Score=25.34 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=46.3
Q ss_pred ccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--HHH-HHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN--TFH-ILIKYFR 76 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~-~li~~~~ 76 (144)
|.|+..+|.+.|+++.+.-. ..-......+|.++.+..-+..+..++.+..+-.. |-.. .|+ +++++-.
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl-PkSA~icYTaALLK~RA 359 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL-PKSAAICYTAALLKTRA 359 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-cchHHHHHHHHHHHHHH
Confidence 46999999999999776522 22224455799999999988888888877765444 4333 344 3444433
No 387
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=60.13 E-value=49 Score=28.48 Aligned_cols=115 Identities=14% Similarity=0.047 Sum_probs=65.8
Q ss_pred hccCCHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhh--hCC---CCCCHHHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYD-------KYDVVLLNSMLCAYCRTG--DMESVIHVMRKLD--ELA---ISPDYNTFHIL 71 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~-------~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~--~~g---~~p~~~~~~~l 71 (144)
..+.|+.+=.-+++++++.-. .--..-|...+....+.| .++++.++.++=. ..+ .+|+...+...
T Consensus 862 ~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i 941 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVI 941 (1265)
T ss_pred HhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHH
Confidence 345666666677776664211 111233445555555555 4555555543311 111 25777776665
Q ss_pred HHH----HHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 72 IKY----FRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 72 i~~----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..+ +...+++++|.-+|+..-+ ..-.+.+|-.+|++.+|+.+..++-..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~ 994 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG 994 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence 544 4446677777766666542 233577888888888888888876543
No 388
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=59.71 E-value=32 Score=19.81 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
....|...++....-. .+++ ++|+-....|+..|...|-++++.....=-.+...++++.|.
T Consensus 9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444444443333222 2333 677777777887788888877777766666777777777775
No 389
>PRK09462 fur ferric uptake regulator; Provisional
Probab=59.15 E-value=42 Score=21.05 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=44.9
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 20 DFEAKYDKYDVVLLNSMLCAYCRT-GDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 20 ~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
.+.+.|..++ ..=-.++..+... +..-.|.+|++.+.+.+...+..|.--.|+.+...|-+
T Consensus 7 ~l~~~glr~T-~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVT-LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4556677643 3345666666664 45778999999999988878888888888888888854
No 390
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.74 E-value=52 Score=22.00 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhCCCCCCH--HH-----HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045403 46 MESVIHVMRKLDELAISPDY--NT-----FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR 114 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~--~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 114 (144)
++.|..+|+.+.+.--.|.. .. --..+..|.+.|.+++|.+++++.-. .|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 57899999988765333311 11 22345568999999999999999975 345444454444444433
No 391
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.74 E-value=62 Score=22.88 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKL 56 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m 56 (144)
+..|+-....|.++|.++.|-.-+++.
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 345566666666666655544444443
No 392
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.67 E-value=64 Score=26.31 Aligned_cols=93 Identities=10% Similarity=0.003 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHHhCcHHHHH--H-HHHHHHHCCCCCCHHHHHHHHHH
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDEL--AISPDYNTFHILIKYFRKEKMYMLAY--R-TMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~--~-~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
+++.+|..+|++-++..+++..... |=+.=...+|..|+...+.|.++... . .-+.+.+.-+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 8999999999999999999988753 33333456888888899988654321 1 11112233356688889888887
Q ss_pred HhccCChHHHHHHHHHhh
Q 045403 110 LGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 110 ~~~~g~~~~a~~l~~~m~ 127 (144)
-..--.-.-..-++.++.
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
Confidence 665333333334444433
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=58.50 E-value=91 Score=24.72 Aligned_cols=125 Identities=7% Similarity=-0.072 Sum_probs=72.5
Q ss_pred hhhccCCHHHHHHHHHHHHhc----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAK----YDKYDVVLLNSM-LCAYCRTGDMESVIHVMRKLDELA---ISPDYNTFHILIKYF 75 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~ 75 (144)
.+.+.+.-. |....++..+. +..+....+.-+ +......+++..|.+.++.....- ..|-..++..++.+.
T Consensus 109 i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~ 187 (608)
T PF10345_consen 109 IYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEAL 187 (608)
T ss_pred HHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence 344444444 77766665433 233444555554 334444579999999999887542 234455566666665
Q ss_pred HH--hCcHHHHHHHHHHHHHC--C-------CCCCHHHHHHHHHHHh--ccCChHHHHHHHHHhhhc
Q 045403 76 RK--EKMYMLAYRTMVDMHKK--G-------HQPEEELCSSLIFHLG--KMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 76 ~~--~g~~~~a~~~~~~m~~~--~-------~~~~~~~~~~l~~~~~--~~g~~~~a~~l~~~m~~~ 129 (144)
.. .+..+++.+..+++... + ..|-..+|..+++.++ ..|+++.+...++++...
T Consensus 188 l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~ 254 (608)
T PF10345_consen 188 LHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQF 254 (608)
T ss_pred HHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44 34455666666666321 1 2344556777766655 688877877777766544
No 394
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=58.35 E-value=58 Score=22.36 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhhCCCC-------CCHHHHHHHHHHHHHhC---------cHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 045403 46 MESVIHVMRKLDELAIS-------PDYNTFHILIKYFRKEK---------MYMLAYRTMVDMHKKGHQ-PEEELCSSLIF 108 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~-------p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~ 108 (144)
.+.|..++.+|--..++ -...-|..+.++|.+.| +.+--..+++...+.|++ .=+++|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 57888888888765543 23445888889999887 566667778888888864 24568888887
Q ss_pred HHhccCChHHHHHHHHHhh
Q 045403 109 HLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~~~m~ 127 (144)
--.-.-+.++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 7666777888888887764
No 395
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=57.47 E-value=56 Score=21.99 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=26.6
Q ss_pred ccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHH-HHHhcC--CHHHHHHHHHHhhhC
Q 045403 7 RGGCFEEAKQLARDFEAK--YDKYDVVLLNSMLC-AYCRTG--DMESVIHVMRKLDEL 59 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~-~~~~~~--~~~~a~~~~~~m~~~ 59 (144)
..|++++|..-++.+.+. .+..-...|.-+.. +++.++ .+.+|..++.-....
T Consensus 41 H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 41 HRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 456666666666555432 12223344454444 455554 455666666555443
No 396
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.08 E-value=35 Score=19.47 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=17.0
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 70 ILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
++++.+.++.-.++|+++++-|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34555666666677777777777665
No 397
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.90 E-value=40 Score=26.39 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 28 YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 28 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
.+...-.-++..|.+.|-.+.+.++.+.+..+-+ ...-|..-+.-+.+.|+.+.+..+.+.+.
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555666666666666666666666554322 22345555555666666555544444443
No 398
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.58 E-value=1.5e+02 Score=27.88 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=67.0
Q ss_pred hhccCCHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 5 FCRGGCFEEAKQLARDF----EAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
-.+++.+.+|...+++- ++. .-....|-.+...|+..+++|.+.-+...-... | ..+. -|--....|+
T Consensus 1393 Sfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~--sl~~-qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1393 SFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---P--SLYQ-QILEHEASGN 1464 (2382)
T ss_pred HHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---c--cHHH-HHHHHHhhcc
Confidence 34677888888888873 221 123344556666888888888888877752211 2 2222 3334456888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHH
Q 045403 81 YMLAYRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
++.|..+|+++.+.+ |+ ..+++-+++.-...|.++.+.-..+
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~d 1507 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLD 1507 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhc
Confidence 988999999988653 44 4456555555455556555544443
No 399
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=56.24 E-value=65 Score=22.35 Aligned_cols=115 Identities=7% Similarity=-0.021 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCHHHHHHHHHHHHHhCc--HHHHHHHHHHHH----HCCC
Q 045403 27 KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AISPDYNTFHILIKYFRKEKM--YMLAYRTMVDMH----KKGH 96 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~----~~~~ 96 (144)
.|-...-..++..+-+....++...+++.+... |..|+......++.+++..|. +..+..++++.. ..+
T Consensus 8 ~P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~- 86 (253)
T PF09090_consen 8 LPFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELE- 86 (253)
T ss_dssp STTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH--
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-
Confidence 345555566666666666677777777776643 234667888888999888874 333333333322 211
Q ss_pred CCCHHHHHHHHHHHhc--cCChHHHHHHHHHhhhcCCCCcHHHHHHhh
Q 045403 97 QPEEELCSSLIFHLGK--MRAHSEALCLQHVKDIAKDRCAMPFMRKFF 142 (144)
Q Consensus 97 ~~~~~~~~~l~~~~~~--~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~ 142 (144)
.++...-..++++-.+ ..+...+.-+.+.|...+...|......+|
T Consensus 87 ~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~Vv~w~f 134 (253)
T PF09090_consen 87 AESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSAVVNWVF 134 (253)
T ss_dssp TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHHHHT
T ss_pred cCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHHHHHHHc
Confidence 3454555556666554 567888888888888766666665555544
No 400
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=54.93 E-value=13 Score=22.35 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=22.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG 44 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 44 (144)
+.+.+.+..-.|.++++.+.+.+...+..|.=--|+.+.+.|
T Consensus 15 ~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 15 ELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 334444445567777777777666666554444444444444
No 401
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.44 E-value=1e+02 Score=24.01 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhcCCC-------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDK-------------YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHIL 71 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~-------------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 71 (144)
.|++..|..++++....|-. ++....-.++++... ++.+.+..++++|.+.|..|.......+
T Consensus 211 ~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 211 NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNALADLL 286 (509)
T ss_pred CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHH
No 402
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=54.41 E-value=14 Score=28.03 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=30.9
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHH----HHHHHHHHHHhCcHHHHHHHH
Q 045403 40 YCRTGDMESVIHVMRKLDELAISPDYNT----FHILIKYFRKEKMYMLAYRTM 88 (144)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~~~a~~~~ 88 (144)
+++.|+.....++|+...+.|. -|..| |+.+-++|.-.+++++|+++.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 6788888888888888887765 33333 444555555556666665543
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.95 E-value=70 Score=22.03 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh----CCC-CCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDE----LAI-SPDYNTFHILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~----~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 91 (144)
-|-.-|...|++++|.++|+.+.. .|. .+...+...+..|+.+.|+.+....+--+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555668899999999999998852 343 356667788888999999988877665544
No 404
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=53.77 E-value=44 Score=19.64 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHCCC
Q 045403 34 NSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK--MYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~ 96 (144)
..++.-|...+++++|...+.++.... .-......+|.++...+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 345556666677777777776664321 12223333344443332 23334555566555543
No 405
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.21 E-value=87 Score=22.89 Aligned_cols=44 Identities=9% Similarity=-0.037 Sum_probs=30.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+++..|.+.++.|.-..|..+.-.+.+.=.+..+..+++.+-+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45677777777777777777777777776677777777776654
No 406
>COG5210 GTPase-activating protein [General function prediction only]
Probab=52.67 E-value=67 Score=24.77 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=28.3
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC
Q 045403 49 VIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 49 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 96 (144)
--+++..|.+.|+.+...++.-++..+...-.++.+.++++-+--.|.
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~ 408 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS 408 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 345555666666666666666666666666666666666665554443
No 407
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=52.40 E-value=16 Score=22.47 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=22.4
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 045403 42 RTGDMESVIHVMRKLDELAISPDYNTFHI 70 (144)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 70 (144)
-.|+...|.++++.++..|+.|-...|..
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 46889999999999999999998887643
No 408
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=52.22 E-value=58 Score=20.71 Aligned_cols=41 Identities=10% Similarity=-0.138 Sum_probs=16.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 87 TMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 87 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+|..+++..+.+|...--.-|--+++.+++.+|.+.|=+|-
T Consensus 46 L~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~Ls 86 (144)
T PF02840_consen 46 LFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKLS 86 (144)
T ss_dssp HHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444443333322222333344555555555554443
No 409
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.12 E-value=94 Score=22.95 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=59.6
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhC---C---CCCCHHHHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRT-GDMESVIHVMRKLDEL---A---ISPDYNTFHILIKY 74 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~---g---~~p~~~~~~~li~~ 74 (144)
|..+.+.|.+..|.++.+-+.+..+.-|...--.+|+.|+-. ++++-..++.+..... . .-| ...|+..+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP-n~a~S~aLA~ 188 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP-NFAFSIALAY 188 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc-cHHHHHHHHH
Confidence 567889999999999999999987777888888899998754 6788788888876552 1 113 4677777777
Q ss_pred HHHhCc
Q 045403 75 FRKEKM 80 (144)
Q Consensus 75 ~~~~g~ 80 (144)
+...++
T Consensus 189 ~~l~~~ 194 (360)
T PF04910_consen 189 FRLEKE 194 (360)
T ss_pred HHhcCc
Confidence 765554
No 410
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=52.03 E-value=64 Score=20.99 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHHhCcH
Q 045403 10 CFEEAKQLARDFEAKY----DKYDV---VLLNSMLCAYCRTGDMESVIHVMRKLDE-LAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~----~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
+-++|..+|..+.+.. ..++. ......+..+.+.- --++++.+.+ .|+.|...++.=++..+.+.=..
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEY----DPDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHH----CHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 4567777777765542 23332 22223333333322 3467777775 88999999999999999988889
Q ss_pred HHHHHHHHHHHHCC
Q 045403 82 MLAYRTMVDMHKKG 95 (144)
Q Consensus 82 ~~a~~~~~~m~~~~ 95 (144)
+.+..+++.+...|
T Consensus 184 ~~~~riwD~~l~eG 197 (199)
T smart00164 184 EIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998766
No 411
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=51.89 E-value=36 Score=18.05 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-----HHhCcHHHHHHH
Q 045403 42 RTGDMESVIHVMRKLDELAISPDYNTFHILIKYF-----RKEKMYMLAYRT 87 (144)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~g~~~~a~~~ 87 (144)
..|++-+|.++++++=...-.|....+..+|... .+.|+.+.|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3555666666665553222223334444444432 234455544443
No 412
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.50 E-value=1.1e+02 Score=24.67 Aligned_cols=82 Identities=15% Similarity=0.003 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 045403 44 GDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQ 123 (144)
Q Consensus 44 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 123 (144)
|+...|..++.........-..+....+.....+.|..-+|-.++.+-.... ...+-++-.+-+++.-..+++.|.+-|
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 4455555555544332111122223333444444555555555555544332 233345555556666666666666666
Q ss_pred HHh
Q 045403 124 HVK 126 (144)
Q Consensus 124 ~~m 126 (144)
++.
T Consensus 700 ~~a 702 (886)
T KOG4507|consen 700 RQA 702 (886)
T ss_pred HHH
Confidence 653
No 413
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=50.69 E-value=55 Score=19.80 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHh-cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Q 045403 12 EEAKQLARDFEA-KYDKY-DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMV 89 (144)
Q Consensus 12 ~~a~~~~~~m~~-~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 89 (144)
+++.+.+..++. .|+.| |+.+==++...+.....++. ...-...|+..|-.||. |+.+.....+-
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~----~~~~~d~g~e~~~~t~~---------Ge~~~~~~~ll 72 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD----EDIKDDSGLELNWKTFT---------GEYDDIYEALL 72 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC----CccCCCCCeEEeeeeec---------CchHHHHHHHH
Confidence 456666666653 46777 55443333333333332220 00011234545555554 66665554433
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccC
Q 045403 90 DMHKKGHQPEEELCSSLIFHLGKMR 114 (144)
Q Consensus 90 ~m~~~~~~~~~~~~~~l~~~~~~~g 114 (144)
.+.- |...|...+...++++...|
T Consensus 73 ~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 73 KQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 3333 55567777777777754433
No 414
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.81 E-value=89 Score=22.71 Aligned_cols=27 Identities=15% Similarity=-0.052 Sum_probs=16.1
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVL 32 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~ 32 (144)
.+.++.++|+..+......|++.|..+
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 455666666666666666666655443
No 415
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=49.56 E-value=41 Score=24.17 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=38.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH--HHHHHHhCcHHHHHHHHHHHHHC
Q 045403 37 LCAYCRTGDMESVIHVMRKLDELAISPDYNTFHIL--IKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
...+...+.++.|+..++.-...--.|....+.-+ .+.+...|+.+.|..++.++.+.
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567778889999998874333233444444433 34477788888888888888753
No 416
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=49.34 E-value=1.4e+02 Score=24.26 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHhhhC----CCCCCHH---HHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 25 YDKYDVVLLNSMLCAYCRTGD----MESVIHVMRKLDEL----AISPDYN---TFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 25 ~~~p~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~----g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
|.+.|+..|..|+.++....+ .+++.++++.+++- |+.+..+ .-.++...|+..|+.+........+.
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ 290 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQ 290 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 677899999999999876432 47777777777642 6654322 13456778888887666555444443
No 417
>PF05261 Tra_M: TraM protein, DNA-binding; InterPro: IPR007925 The TraM protein is an essential part of the DNA transfer machinery of the conjugative resistance plasmid R1 (IncFII). On the basis of mutational analyses, it was shown that the essential transfer protein TraM has at least two functions. First, a functional TraM protein was found to be required for normal levels of transfer gene expression. Second, experimental evidence was obtained that TraM stimulates efficient site-specific single-stranded DNA cleavage at the oriT, in vivo. Furthermore, a specific interaction of the cytoplasmic TraM protein with the membrane protein TraD was demonstrated, suggesting that the TraM protein creates a physical link between the relaxosomal nucleoprotein complex and the membrane-bound DNA transfer apparatus [].; GO: 0003677 DNA binding, 0000746 conjugation; PDB: 3ON0_A 3OMY_B 1DP3_A 2G9E_A 3D8A_B 2G7O_A.
Probab=48.87 E-value=63 Score=19.98 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=42.9
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVIHVMRKLDELAISPDYNTFHILIKY 74 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 74 (144)
+.|.+..-.++-..+.++=++.|..+.-+++++.-+.+.+-|- +=++ ++.+.+-..|..-|+-++--
T Consensus 5 q~y~s~~v~~~I~~iVe~r~qeGA~~~dvs~SSv~smLlELGLrVY~~-----Q~E~k~s~Fnq~eFnk~lLe 72 (127)
T PF05261_consen 5 QIYVSNKVLEEINDIVEERRQEGATEKDVSFSSVSSMLLELGLRVYEA-----QMERKESGFNQEEFNKVLLE 72 (127)
T ss_dssp CCE--HCHHHHHHHHHHHHHCCT-TTTT--HHHHHHHHHHCCCCHHHH-----CCHHCSSS--HHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhHHHHHH-----HHhhccCCCCHHHHHHHHHH
Confidence 4566677777888888888889999999999999999988882 2222 45545556777777765543
No 418
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=48.06 E-value=1.6e+02 Score=24.42 Aligned_cols=106 Identities=13% Similarity=0.039 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCC--------
Q 045403 26 DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQ-------- 97 (144)
Q Consensus 26 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------- 97 (144)
++-|....-.|-.++...|+-++|...|-+-.. | ...++.|.+.++|.+|.++-++..-..+.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aa 918 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAA 918 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 344666677788888888888888877755432 2 23456677777887777776555311110
Q ss_pred ---CCHHHHHHHHHHHhccCChHHHHHHHHHhhhc--CCCCcHHHHHHh
Q 045403 98 ---PEEELCSSLIFHLGKMRAHSEALCLQHVKDIA--KDRCAMPFMRKF 141 (144)
Q Consensus 98 ---~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~~~~~~ 141 (144)
-+.. .---|..+.++|.+-.|.+++.+|-++ +...|+.-.-++
T Consensus 919 qll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 919 QLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKL 966 (1189)
T ss_pred HHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHH
Confidence 0101 111245566777777777777777665 234444433333
No 419
>COG5210 GTPase-activating protein [General function prediction only]
Probab=47.87 E-value=88 Score=24.14 Aligned_cols=83 Identities=11% Similarity=-0.078 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhhCCCCCCHHH---HHHHHHHHHHhCcHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 045403 46 MESVIHVMRKLDELAISPDYNT---FHILIKYFRKEKMYM-LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALC 121 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 121 (144)
-+.|...+..+.+....|+... ....+........++ ..-++++.+...|+.+...++..++..+.+....+.+.+
T Consensus 319 Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lr 398 (496)
T COG5210 319 EEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALR 398 (496)
T ss_pred hHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHH
Confidence 5667777777766321233332 111122211111222 235578888888888888888888888888888888888
Q ss_pred HHHHhhh
Q 045403 122 LQHVKDI 128 (144)
Q Consensus 122 l~~~m~~ 128 (144)
+++.+-.
T Consensus 399 iwD~lf~ 405 (496)
T COG5210 399 IWDCLFL 405 (496)
T ss_pred HHHHHHH
Confidence 8886543
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.63 E-value=53 Score=18.74 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=11.2
Q ss_pred HHhcCCHHHHHHHHHHhhh
Q 045403 40 YCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~ 58 (144)
....|++++|...+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4455666666666666543
No 421
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=47.57 E-value=1.1e+02 Score=22.48 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=19.5
Q ss_pred hCcHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHH
Q 045403 78 EKMYMLAYRTMVDMHKKGHQPE---EELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
.|.||..++..+.++ -|+ ...|..++--+....++..|..+++
T Consensus 53 sG~WD~VL~~vqsLK----LP~kkL~dLYEqivlEliELREL~tAR~~lR 98 (508)
T KOG0275|consen 53 SGHWDTVLKTVQSLK----LPDKKLIDLYEQIVLELIELRELGTARSLLR 98 (508)
T ss_pred cCchHHHHHHHHhcc----CchhHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 455555555444443 122 2234444444444555555555544
No 422
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=47.47 E-value=56 Score=20.77 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=17.9
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 51 HVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 51 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
-+|..+++..+++|...--.-|--++..+++-+|-+.|-+|.
T Consensus 45 PL~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~Ls 86 (144)
T PF02840_consen 45 PLFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKLS 86 (144)
T ss_dssp HHHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444443333333233333344555555555555554
No 423
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.33 E-value=17 Score=28.42 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=26.2
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI 61 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 61 (144)
+..|.+.|..+.|.++.+.+-..-. ...-|...+..+.+.++...+..+-+.+.+..+
T Consensus 412 l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~ 469 (566)
T PF07575_consen 412 LEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYC 469 (566)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 5677788888888888887765433 345677777788888887777776666664433
No 424
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.18 E-value=68 Score=25.34 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHH---HhccCChHHHHHHH
Q 045403 52 VMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH-----QPEEELCSSLIFH---LGKMRAHSEALCLQ 123 (144)
Q Consensus 52 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~~~~~l~~~---~~~~g~~~~a~~l~ 123 (144)
|++++.--|++||..||++ .-+++..++-..|.+.|- .|....-.--..+ -++...+++-++++
T Consensus 255 IleDl~~LgIkpd~~TyTS--------DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw 326 (712)
T KOG1147|consen 255 ILEDLSLLGIKPDRVTYTS--------DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIW 326 (712)
T ss_pred HHHHHHHhCcCcceeeech--------hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHH
Q ss_pred HHhhhcCC
Q 045403 124 HVKDIAKD 131 (144)
Q Consensus 124 ~~m~~~~~ 131 (144)
++|.....
T Consensus 327 ~EM~kGs~ 334 (712)
T KOG1147|consen 327 EEMKKGSE 334 (712)
T ss_pred HHHhccch
No 425
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.15 E-value=59 Score=25.40 Aligned_cols=115 Identities=11% Similarity=0.026 Sum_probs=75.3
Q ss_pred hhccCCHHHHHHHHHHHHhc---CC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------CCCCCCH----
Q 045403 5 FCRGGCFEEAKQLARDFEAK---YD--KY---DVVLLNSMLCAYCRTGDMESVIHVMRKLDE-------LAISPDY---- 65 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~---~~--~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~---- 65 (144)
+.-.|++.+|.+++....-. |. .| .-.-||.|-..+.+.|.+..+..+|.+..+ +|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 34468889998887654322 21 11 223468888888888888887777766553 4655432
Q ss_pred -------HHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCChHHHHH
Q 045403 66 -------NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK---MRAHSEALC 121 (144)
Q Consensus 66 -------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~ 121 (144)
.+||.=+ .|...|++-.|.++|.+-.+. ...++..|--|..+|.- .|-.++...
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~~~l~ee~~~ 393 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQKGLLEEGNS 393 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhhhhhhhhccC
Confidence 3355433 366899999999999988753 45677889888888873 444444433
No 426
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=46.24 E-value=1.1e+02 Score=22.03 Aligned_cols=91 Identities=9% Similarity=0.053 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 045403 15 KQLARDFEAKYDKYDVVLLNSML---CAYCRTGDMESVIHVMRKLDEL-AISPDYNTFHILIKYFRKEKMYMLAYRTMVD 90 (144)
Q Consensus 15 ~~~~~~m~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 90 (144)
..+++........|....-..+| .+|.-...+|....+++..+.. ..-....-|+.+++-..-.|++.+...+|+-
T Consensus 5 ~~Ll~~~~~~~~~~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yifd~ 84 (296)
T PF14649_consen 5 HKLLELADSSHKSQLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIFDI 84 (296)
T ss_pred HHHHHHHhccCCCCccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHHHH
Confidence 45666655544456777778888 5566777888888888766542 1224556688888888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHh
Q 045403 91 MHKKGHQPEEELCSSLIFHLG 111 (144)
Q Consensus 91 m~~~~~~~~~~~~~~l~~~~~ 111 (144)
+.+.+ -|..|+.-..
T Consensus 85 L~~n~------qfE~LL~k~~ 99 (296)
T PF14649_consen 85 LIEND------QFELLLRKGI 99 (296)
T ss_pred HHHcC------hHHHHHhccc
Confidence 88654 3666766644
No 427
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=46.05 E-value=1.8e+02 Score=25.03 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCC----------------------HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 045403 33 LNSMLCAYCRTGD----------------------MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVD 90 (144)
Q Consensus 33 ~~~li~~~~~~~~----------------------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 90 (144)
=+++|+|+++.|. .+.-.+.|.++.+.=-..|..+|..-.+.+...|++-++.+++.+
T Consensus 1177 k~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~k 1256 (1304)
T KOG1114|consen 1177 KDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLK 1256 (1304)
T ss_pred HHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHH
Confidence 4677777776553 344455666665542236777888888888889999999999888
Q ss_pred HHH-CCCCCCHHHHHHHHHHHhccCChH
Q 045403 91 MHK-KGHQPEEELCSSLIFHLGKMRAHS 117 (144)
Q Consensus 91 m~~-~~~~~~~~~~~~l~~~~~~~g~~~ 117 (144)
+.+ .|-.++...|..++..+-..|--+
T Consensus 1257 liee~~es~t~~~~~~~~el~~~Lgw~H 1284 (1304)
T KOG1114|consen 1257 LIEENGESATKDVAVLLAELLENLGWNH 1284 (1304)
T ss_pred HHHhccccchhHHHHHHHHHHHHhCchH
Confidence 875 556777778877777766666544
No 428
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.42 E-value=1.1e+02 Score=22.01 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=82.2
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCC--CCCHHHHHHHHHHHHHh
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDV---VLLNSMLCAYCRTGDMESVIHVMRKLDE---LAI--SPDYNTFHILIKYFRKE 78 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~--~p~~~~~~~li~~~~~~ 78 (144)
+...+++|..-|+...+....... ...--+|....+.+++++.+.-|.+|.. +.+ ..+..+.|++++.-+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345788999999887764322222 2334578888999999999999888752 333 24667788888888877
Q ss_pred CcHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 79 KMYMLAYRTMVDMHK-------KGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 79 g~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+++.....++.-.+ ..+.. .|-+-|-+.|...|++.+..++++++..+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWF--KTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWF--KTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeee--eccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 776665555443322 12222 23345778888999999999999988765
No 429
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=45.04 E-value=2e+02 Score=24.65 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=44.4
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHH
Q 045403 42 RTGDMESVIHVMRKLDELAISPDYNT-FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELC 103 (144)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 103 (144)
....+.+++++|..|.+.|+.+.... |-..-..+.+.+.+.+|..+|+.-.+....|....-
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~ 152 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLL 152 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 45567888889999988888765444 455555577777888888888888776666655443
No 430
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.82 E-value=1.2e+02 Score=22.08 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=30.6
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHH-------HHHHHHHHHHhCcHHHH
Q 045403 41 CRTGDMESVIHVMRKLDELAISPDYNT-------FHILIKYFRKEKMYMLA 84 (144)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~li~~~~~~g~~~~a 84 (144)
.+.+++++|...|.+....|+..|..+ ...+.+.|...|+....
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 456678888888888888888776654 44566667777765443
No 431
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.78 E-value=93 Score=24.79 Aligned_cols=70 Identities=10% Similarity=-0.074 Sum_probs=0.0
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHhhhc-CCCCcHHHHHHh
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLG-KMRAHSEALCLQHVKDIA-KDRCAMPFMRKF 141 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~l~~~m~~~-~~~~~~~~~~~~ 141 (144)
+....+.|.+..|+++-+-+.+....-|+.....+|+.|+ ++.+++--.++++..+.. ....-|++.|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~ 420 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL 420 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH
No 432
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.58 E-value=1.4e+02 Score=23.02 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 79 (144)
.....++++. +.++.+.|..++.+|...|..|....-..+..++-..|
T Consensus 245 ~~i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 245 EVVRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 3444555554 34677888888888877777776665555555544444
No 433
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=44.58 E-value=1e+02 Score=21.21 Aligned_cols=83 Identities=10% Similarity=0.066 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHhcC---------CHHHHHHHHHHhhhCCCC-CCHHHHHHHH
Q 045403 10 CFEEAKQLARDFEAKYDK-------YDVVLLNSMLCAYCRTG---------DMESVIHVMRKLDELAIS-PDYNTFHILI 72 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~-------p~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~g~~-p~~~~~~~li 72 (144)
..+.|..++.+|-...++ -...-|-.+-.+|+++| +.+....+++-..+.|++ .=.+.|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 467888888888655322 25677888889999887 357778888888888875 3457788888
Q ss_pred HHHHHhCcHHHHHHHHHHHH
Q 045403 73 KYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~ 92 (144)
+.-.-.-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 76555556777777777664
No 434
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.02 E-value=1.7e+02 Score=23.66 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=54.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
+..+.|++..|.+.|.... -|..|+-.+...|+.+....+-..-++.|. .|.-.-+|-..|++++
T Consensus 675 ~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEE 739 (794)
T ss_pred HHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHH
Confidence 4556788888888877554 277888888889988877777777776654 3444556778999999
Q ss_pred HHHHHHHH
Q 045403 84 AYRTMVDM 91 (144)
Q Consensus 84 a~~~~~~m 91 (144)
+.+++.+-
T Consensus 740 C~~lLi~t 747 (794)
T KOG0276|consen 740 CLELLIST 747 (794)
T ss_pred HHHHHHhc
Confidence 88877655
No 435
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=43.88 E-value=87 Score=20.15 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=37.2
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 42 RTGDMESVIHVMRKLDELAISPD---YNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
...+.+++..+++.|.-- .|+ ..+|-..+ +...|++++|.+++.++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 478899999999998753 343 33444333 568999999999999998654
No 436
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.63 E-value=1.1e+02 Score=21.47 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=14.7
Q ss_pred hccCChHHHHHHHHHhhhc
Q 045403 111 GKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 111 ~~~g~~~~a~~l~~~m~~~ 129 (144)
+..+++.+|.++|+++-..
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577889999999987653
No 437
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=43.43 E-value=66 Score=18.63 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Q 045403 34 NSMLCAYCRTGDMESVIHVMRKLDEL-AISPDYNTFHILIKYFRKEKMYMLAYRTM 88 (144)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 88 (144)
..+-.-|-+.|-.+.|.+++.+-+.. |-. .|...|+.++-.++.-..|..++
T Consensus 36 D~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 36 DNLAYEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHHh
Confidence 33444556667788888888776653 443 77888888888888777666654
No 438
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=43.40 E-value=1.4e+02 Score=22.41 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=68.2
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.-.|+-..|+.....+..-.+= |...|-.--.+|...|++..|..=+....+-. .-|..++--+-..+-..|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 455678888888888888764332 67777888889999999988876555443321 2455667777788889999999
Q ss_pred HHHHHHHHHHCCCCCCH
Q 045403 84 AYRTMVDMHKKGHQPEE 100 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~ 100 (144)
++..+.+..+. .||.
T Consensus 242 sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 242 SLKEIRECLKL--DPDH 256 (504)
T ss_pred HHHHHHHHHcc--Ccch
Confidence 99999999874 3543
No 439
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=43.10 E-value=47 Score=18.91 Aligned_cols=33 Identities=3% Similarity=0.011 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 26 DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 26 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
+.|+...||.+++.....+...-|..++.+...
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~ 44 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVD 44 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHcC
Confidence 578999999999999998888888777777654
No 440
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=43.04 E-value=1.2e+02 Score=22.21 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 045403 33 LNSMLCAYCRTGD---MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCS 104 (144)
Q Consensus 33 ~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 104 (144)
-..+++.+...++ +-+|..+++...+.. +.|...---++..|...|-.+.|...|..+.-..++.|+..|.
T Consensus 183 ~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 183 AHSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 3455555555554 345666666655432 2455555667788999999999999998886544555554443
No 441
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.94 E-value=1.6e+02 Score=23.03 Aligned_cols=144 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-------HHHHHHH
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY-------NTFHILI 72 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li 72 (144)
++++....|.......+.+.+....+++ .....=..+-........+-...++.-+....+++.. .++.+++
T Consensus 346 ~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 346 FLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLV 425 (574)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Q ss_pred HHHHHhCc-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHHHHHhhcC
Q 045403 73 KYFRKEKM-------YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPFMRKFFIF 144 (144)
Q Consensus 73 ~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~ 144 (144)
+.+|.... -+-...+.+.+.+.--.-|..--...++++.+.|...-...+-.-+.......+.--.-.++.+
T Consensus 426 ~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 426 RRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHH
No 442
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=42.80 E-value=2.1e+02 Score=24.31 Aligned_cols=124 Identities=11% Similarity=0.061 Sum_probs=71.8
Q ss_pred hhhhhccCCHHHHHHHHHHHH-hcCC--CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCHHHHHHHH-----
Q 045403 2 ISAFCRGGCFEEAKQLARDFE-AKYD--KYDVVLLNSMLCAYCRT-GDMESVIHVMRKLDELAISPDYNTFHILI----- 72 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~-~~~~--~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li----- 72 (144)
++-+...+++.+|+.+.+.-+ ..++ ..|...|-.=+..|.+. ++.+-...++..+++..+.- ..|....
T Consensus 701 ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~--tmY~~~~~~~~~ 778 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTK--TMYKDTYPPSSE 778 (928)
T ss_pred HHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccc--cccccccccccc
Confidence 345667888889888855432 1111 24445555556666654 67777777777776554321 1122222
Q ss_pred -------HHHHHhCcHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC--ChHHHHHHHHHhhhc
Q 045403 73 -------KYFRKEKMYMLAYRTMVDMHKKGHQPEEE-LCSSLIFHLGKMR--AHSEALCLQHVKDIA 129 (144)
Q Consensus 73 -------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g--~~~~a~~l~~~m~~~ 129 (144)
......++....++.+.+..+. ..+.. -...++.+|.+.+ ++++|+.++.++++.
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 2222344555555554443322 33333 4457889999988 999999999999864
No 443
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=42.68 E-value=81 Score=23.10 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhCcHH
Q 045403 67 TFHILIKYFRKEKMYM 82 (144)
Q Consensus 67 ~~~~li~~~~~~g~~~ 82 (144)
+|.-|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 3444444554444444
No 444
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=42.31 E-value=73 Score=23.17 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=12.0
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHH
Q 045403 70 ILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
.+++.|.+.|.+++|.++.....
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHH
Confidence 34555555555555555544443
No 445
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.11 E-value=1.2e+02 Score=21.37 Aligned_cols=117 Identities=12% Similarity=0.027 Sum_probs=75.1
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHHhCcHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVL-LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKY-FRKEKMYM 82 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~ 82 (144)
|.....+..|+..|..... +.|++.+ |+.-+-++.+.++++.+..=-.+-.+ +.||.+--..++.. ......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 4455677788886655554 5677744 56777778888888887655444433 56777766555554 45566788
Q ss_pred HHHHHHHHHH----HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 83 LAYRTMVDMH----KKGHQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 83 ~a~~~~~~m~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
++...+.+.. ++.+.+...+...|..+=-+.=.+.+..++.+.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8888877763 344556667788887774444445555555443
No 446
>PF15469 Sec5: Exocyst complex component Sec5
Probab=42.09 E-value=96 Score=20.15 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
..+..+..+++... ..+..-.-|.-+.+.|+++.+..-|.+.+.
T Consensus 71 ~~l~~~l~~l~r~~------flF~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 71 DKLRNALEFLQRNR------FLFNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHHHHHHH------HHHHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 33444555544443 333344667777888999999998888764
No 447
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=41.99 E-value=8.8 Score=29.50 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH----HHHHHHHHHHhC-cHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT----FHILIKYFRKEK-MYM 82 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g-~~~ 82 (144)
..++++|++..++.++.+-+.+ .|-.-.+.++|.++.++|+.||..| ....+.+|.-.| .++
T Consensus 206 ~~~ldea~~~~~ea~~~~~~~S-------------Ig~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P~g~t~e 272 (546)
T PF01175_consen 206 TDDLDEALARAKEARAKKEPLS-------------IGLLGNAADLWEELVERGIIPDLVTDQTSAHDPLNGYYPAGLTFE 272 (546)
T ss_dssp ESSHHHHHHHHHHHHHTT--EE-------------EEEES-HHHHHHHHHHTT---SEE---SSTT-TTTS---TT--HH
T ss_pred cCCHHHHHHHHHHhhccCCeeE-------------EEEeccHHHHHHHHHHcCCCCCcccCCCccccccccCCCCCCCHH
Confidence 3577888888888877665533 2334557788889998898888776 333444666666 344
Q ss_pred HHHH
Q 045403 83 LAYR 86 (144)
Q Consensus 83 ~a~~ 86 (144)
++.+
T Consensus 273 ea~~ 276 (546)
T PF01175_consen 273 EANE 276 (546)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 448
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.88 E-value=1.1e+02 Score=20.84 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCC--------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 045403 34 NSMLCAYCRTGDMESVIHVMRKLDELAI--------------SPDYNTFHILIKYFRKEKMYMLAYRTMVD 90 (144)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~g~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 90 (144)
-+++..|-+..++.+..++++.|-+-.+ .+.--..|.-...|.+.|.+|.|..++.+
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3566677788888888888888765443 22333467778889999999999988774
No 449
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=41.72 E-value=29 Score=24.72 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC
Q 045403 45 DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 96 (144)
.|+..+++++..++. .|+..|-+.++-++++. .++..+..+++...|+
T Consensus 195 ~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGEt--~~Ev~e~m~DLr~~gv 242 (306)
T COG0320 195 TYERSLSLLERAKEL--GPDIPTKSGLMVGLGET--DEEVIEVMDDLRSAGV 242 (306)
T ss_pred cHHHHHHHHHHHHHh--CCCcccccceeeecCCc--HHHHHHHHHHHHHcCC
Confidence 677777777776653 46677777777666543 3456667777776654
No 450
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=41.54 E-value=1.4e+02 Score=22.01 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhh---h----CCC------------------CCCHHHHHHH---HHHHHHhCc
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLD---E----LAI------------------SPDYNTFHIL---IKYFRKEKM 80 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~----~g~------------------~p~~~~~~~l---i~~~~~~g~ 80 (144)
-+.+.-.+-..+...|+.+.|.+++++.. + ... .-|...|-++ |...++.|.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 44445555566778899887777776642 1 111 1133334444 566888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHhhh
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLG-KMRAHSEALCLQHVKDI 128 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~l~~~m~~ 128 (144)
+..|.++.+-+......-|+..-...|+.|+ ++++++--.++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999988765557888888999987 78888888888887654
No 451
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=41.26 E-value=1.3e+02 Score=21.40 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 64 DYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP---EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
...+|..+.+.+.+.|.++.|...+.++.+.+... ++...-.-.+..-..|+-++|...+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34467777888888999999999888887644211 334454556667778888999988887665
No 452
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=41.06 E-value=1.6e+02 Score=22.48 Aligned_cols=125 Identities=13% Similarity=0.114 Sum_probs=82.9
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCC-HHHHHHHHHHHHHhCc
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AISPD-YNTFHILIKYFRKEKM 80 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~~li~~~~~~g~ 80 (144)
.++.+.|++.++-.+++.+-+..+.|++. .+..+.+.|+ .+.+=+++..+- ..+|| ...--.+..+-...|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 46788899999999999999876666643 2333445554 333444443321 34453 3455566677778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHhhhcCCCCcH
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLG-KMRAHSEALCLQHVKDIAKDRCAM 135 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~l~~~m~~~~~~~~~ 135 (144)
+..|..--+.... ..|....|-.|.+.-- +.||-.++..++.+-....+.+.|
T Consensus 345 ~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 345 FSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred hHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 8877765555543 4688889988888754 459999999999886655443333
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.54 E-value=1e+02 Score=19.97 Aligned_cols=64 Identities=6% Similarity=-0.014 Sum_probs=39.2
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 045403 54 RKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSE 118 (144)
Q Consensus 54 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 118 (144)
+.+++.|++++.--- .++..+...++.-.|.++++.+.+.+..++..|-=--++.+.+.|-+.+
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 334566776555443 4444444555666788888888887766655543334566677776654
No 454
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=40.48 E-value=61 Score=25.56 Aligned_cols=16 Identities=19% Similarity=-0.016 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhccCC
Q 045403 100 EELCSSLIFHLGKMRA 115 (144)
Q Consensus 100 ~~~~~~l~~~~~~~g~ 115 (144)
...|..++.-|.+.|.
T Consensus 683 ~~se~~li~df~~~~y 698 (729)
T KOG0481|consen 683 QVSEHSLIRDFVRQGY 698 (729)
T ss_pred chhHHHHHHHHHhccc
Confidence 3344555555554443
No 455
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=40.43 E-value=46 Score=17.78 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHHhhhCC-CCCC
Q 045403 43 TGDMESVIHVMRKLDELA-ISPD 64 (144)
Q Consensus 43 ~~~~~~a~~~~~~m~~~g-~~p~ 64 (144)
.-+++.|...|.++.+.| ++|+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChh
Confidence 348999999999998765 5444
No 456
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.40 E-value=1.7e+02 Score=22.57 Aligned_cols=48 Identities=8% Similarity=0.011 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045403 66 NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR 114 (144)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 114 (144)
.....++++. ..++.+.|..++.+|...|..|....-..+..++-..|
T Consensus 245 ~~i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 245 EVVRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 4555566665 56889999999999988887766655555554444444
No 457
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.24 E-value=1.3e+02 Score=21.19 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHhhhC--CCCCCHHHHHHHHHH---HHHhCcHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhc
Q 045403 45 DMESVIHVMRKLDEL--AISPDYNTFHILIKY---FRKEKMYMLAYRTMVDMHKKGHQPE-------EELCSSLIFHLGK 112 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~~~-------~~~~~~l~~~~~~ 112 (144)
++++|...|+..-+. |-..+...--.++++ -+..+++.+|.++|++.....+..+ .+.+.+.+..+++
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 344555555554332 222333333333333 4456788899999999986544332 2334445555554
Q ss_pred c
Q 045403 113 M 113 (144)
Q Consensus 113 ~ 113 (144)
.
T Consensus 209 ~ 209 (288)
T KOG1586|consen 209 A 209 (288)
T ss_pred c
Confidence 4
No 458
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=39.70 E-value=1.7e+02 Score=22.24 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=54.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhhCCC-CCCHH----
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSM------------LCAYCRTGDMESVIHVMRKLDELAI-SPDYN---- 66 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~---- 66 (144)
-.-.+|++.+|..+..+. .+.||.++ ++.|...+++-.|.-+-.+....-. .||..
T Consensus 140 ike~~Gdi~~Aa~il~el-------~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKl 212 (439)
T KOG1498|consen 140 IKEEQGDIAEAADILCEL-------QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKL 212 (439)
T ss_pred HHHHcCCHHHHHHHHHhc-------chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHH
Confidence 345689999999986654 45666655 4455566666666655555443322 24433
Q ss_pred -HHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 67 -TFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 67 -~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
-|+.++....+.+.+=.+.+.+......|
T Consensus 213 kyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 213 KYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 27777777777777777777777776543
No 459
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=39.64 E-value=92 Score=19.84 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
...++.+ -+.|-..+...++++|.+.|+......|+-++.-
T Consensus 113 lGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 113 LGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred hHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 3333333 3567777788888888888888888888766554
No 460
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.50 E-value=1.8e+02 Score=23.05 Aligned_cols=95 Identities=8% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh-hCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045403 36 MLCAYCRTGDMESVIHVMRKLD-ELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR 114 (144)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 114 (144)
++.-|.+.++.++|..++..|- ..--.--..+.+.+++...+..--++.+..++.....=..|....-.....-|.. -
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred ChHHHHHHHHHhhhcCC
Q 045403 115 AHSEALCLQHVKDIAKD 131 (144)
Q Consensus 115 ~~~~a~~l~~~m~~~~~ 131 (144)
=.+-|++.|..|...+.
T Consensus 493 V~~~aRRfFhhLLR~~r 509 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQR 509 (545)
T ss_pred HHHHHHHHHHHHHHhhH
No 461
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.66 E-value=1.2e+02 Score=22.24 Aligned_cols=14 Identities=7% Similarity=0.026 Sum_probs=6.9
Q ss_pred HHHHHHHHHhccCC
Q 045403 102 LCSSLIFHLGKMRA 115 (144)
Q Consensus 102 ~~~~l~~~~~~~g~ 115 (144)
+|..|+.+|+..|+
T Consensus 323 ~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQ 336 (412)
T ss_pred hhhHHHHHHhcCCh
Confidence 44445555555544
No 462
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=38.61 E-value=1.6e+02 Score=21.62 Aligned_cols=61 Identities=20% Similarity=0.067 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHIL 71 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 71 (144)
.+-+|..+++...... +.|...=-.+++.|..-|....|...|..+.-+.+..|.-.|..+
T Consensus 198 ~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~ 258 (365)
T PF09797_consen 198 YLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLIL 258 (365)
T ss_pred HHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHH
Confidence 3445666667665542 224444457788899999999999999998766666666555443
No 463
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.21 E-value=1e+02 Score=19.79 Aligned_cols=29 Identities=10% Similarity=-0.125 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 045403 63 PDYNTFHILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 63 p~~~~~~~li~~~~~~g~~~~a~~~~~~m 91 (144)
||.-.|.+.+.+|...++.+.|.-++++.
T Consensus 37 ~~dw~Ya~~L~~Yf~~dD~dnARfLWKRI 65 (197)
T KOG4414|consen 37 HDDWPYAIHLAGYFLHDDCDNARFLWKRI 65 (197)
T ss_pred CCcchHHHHHHHHHHhccchhHHHHHHhC
Confidence 44445555555555555555555555544
No 464
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.14 E-value=2.4e+02 Score=23.54 Aligned_cols=52 Identities=12% Similarity=-0.099 Sum_probs=23.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAISP---DYNTFHILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m 91 (144)
+.+.+.+.+++|+++-+... |..| -...+...|..+...|++++|-...-.|
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m 418 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKM 418 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHH
Confidence 33445555555555444322 2222 2233445555555555555554444444
No 465
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=37.99 E-value=93 Score=18.81 Aligned_cols=60 Identities=22% Similarity=0.144 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC------------------CCCHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 63 PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH------------------QPEEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 63 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------------~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
|..+|...+-..++-.. .-+..++++|.+.|+ .+........+....+.|+++.|.++++
T Consensus 17 ~~~vtl~elA~~l~cS~--Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 17 PVEVTLDELAELLFCSR--RNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred CcceeHHHHHHHhCCCH--HHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555555443222 235667888877653 1334556667777888999999998888
No 466
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=37.88 E-value=1.8e+02 Score=22.85 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=33.5
Q ss_pred hccCCHHHHHHHHHHHHhcCC---CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYD---KY----------DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT 67 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~---~p----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 67 (144)
...|...++..+++++...|- .+ |....-.++.+ ...++..++...++++.+.|..|....
T Consensus 209 ~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~~~-i~~~d~~~~~~~~~~l~~~G~~~~~~l 282 (515)
T COG2812 209 AAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLLEA-ILKGDAKEALRLINELIEEGKDPEAFL 282 (515)
T ss_pred HcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 345777777777777776542 11 11111111111 234567777777777777776665443
No 467
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.87 E-value=1.1e+02 Score=21.01 Aligned_cols=77 Identities=10% Similarity=0.137 Sum_probs=0.0
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRT-GDMESVIHVMRKLDELAISPDYNTFHILIKYFRK 77 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 77 (144)
|....-+.|+++++.+.++++...+...+..--|.+-.+|-.. |....+.+++..+....-.-.......++..|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ 84 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHH
No 468
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=37.77 E-value=2.1e+02 Score=22.89 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc-
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG-HQPEEELCSSLIFHLGK- 112 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~- 112 (144)
.....+.-.|+++.|.+.+-+ ..+...|.+++.+.+..|+..+-.+... ..+.... -.|...-+.-||..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 445666778889999888877 3344567777777777776655443322 3333211 11222557777777775
Q ss_pred --cCChHHHHHHHHHhhhcCC
Q 045403 113 --MRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 113 --~g~~~~a~~l~~~m~~~~~ 131 (144)
..|..+|.+.+-.+.....
T Consensus 338 F~~td~~~Al~Y~~li~~~~~ 358 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLFKD 358 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS-S
T ss_pred HhccCHHHHHHHHHHHHHcCC
Confidence 5577788888877765444
No 469
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.62 E-value=92 Score=18.66 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHH
Q 045403 46 MESVIHVMRKLDELA--ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELC 103 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 103 (144)
....++-+.+....+ ++|..+ ..|--.|++.|+-+.+.+-|+.=+. +-|.+.+|
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~H--AhLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYH--AHLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHH--HHHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 444555566665543 334333 3344456777777776666655432 34554444
No 470
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.58 E-value=1.4e+02 Score=20.67 Aligned_cols=99 Identities=19% Similarity=0.150 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHH--HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCH
Q 045403 26 DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP---DYNT--FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEE 100 (144)
Q Consensus 26 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 100 (144)
+.+...-.|.|+=-|.-+..+.+|-+.|.. +.|+.| |..+ -..-|....+.|++++|.+...++.-.-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 566667777777666666667777777655 556655 3333 345577789999999999998888633222332
Q ss_pred HHHHHH----HHHHhccCChHHHHHHHHHh
Q 045403 101 ELCSSL----IFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 101 ~~~~~l----~~~~~~~g~~~~a~~l~~~m 126 (144)
..+=.| +-=..+.|..++|.+..+.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 111111 11235677888888877753
No 471
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=37.34 E-value=77 Score=17.71 Aligned_cols=34 Identities=24% Similarity=0.101 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG 44 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 44 (144)
+.+.|..++..++... +.++..||++.+.+.+++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHcc
Confidence 4556666666666442 336778888877777665
No 472
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.18 E-value=87 Score=18.24 Aligned_cols=70 Identities=4% Similarity=-0.043 Sum_probs=43.1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC
Q 045403 21 FEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 21 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 96 (144)
+.+.|++ +.....+-.+. .++.+...+++..=.+. .....|+..|+.++...|.-..|..+-+.+.+.|.
T Consensus 26 aR~LGLs-e~~I~~i~~~~---~~~~eq~~qmL~~W~~~--~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~ 95 (96)
T cd08315 26 MRQLGLS-ENEIDVAKANE---RVTREQLYQMLLTWVNK--TGRKASVNTLLDALEAIGLRLAKESIQDELISSGK 95 (96)
T ss_pred HHHcCCC-HHHHHHHHHHC---CCCHHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcCC
Confidence 4555665 33333333331 22355566555544432 13356799999999999988888888887776653
No 473
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.15 E-value=1.1e+02 Score=19.22 Aligned_cols=63 Identities=5% Similarity=0.024 Sum_probs=34.4
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 045403 54 RKLDELAISPDYNTFHILIKYFRKE-KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHS 117 (144)
Q Consensus 54 ~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 117 (144)
+.+.+.|++++.-- ..++..+... +..-.|.++++.+.+.+...+..|-=--++.+.+.|-+.
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34556676554433 3334444433 445667778888877665555444333445556666554
No 474
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=36.99 E-value=59 Score=23.66 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
.+++.|.++|.+++|.++....++
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHH
Confidence 567788888888888888766553
No 475
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=36.50 E-value=12 Score=29.17 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYC--RTGDMESVIHVMRKLDELAISPDYN--TFHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~ 78 (144)
+++.+.|+++.|..+++++....+.|.....-.++.+-. ..|+++.|.+.++......+.+... .+.....++...
T Consensus 32 ~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~ 111 (536)
T PF04348_consen 32 RALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQ 111 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777776556666666666666643 3567777777776543333322221 133333345445
Q ss_pred CcHHHH
Q 045403 79 KMYMLA 84 (144)
Q Consensus 79 g~~~~a 84 (144)
|++-++
T Consensus 112 ~~~l~A 117 (536)
T PF04348_consen 112 GDPLAA 117 (536)
T ss_dssp ------
T ss_pred CCHHHH
Confidence 544433
No 476
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=36.49 E-value=1.1e+02 Score=22.09 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=31.4
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 55 KLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH-QPEEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 55 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
+|..+|+..+...|++.+- ....+...+++.+..+.|. ..++.||.+-...+.+....+++.++..
T Consensus 20 ELe~rG~~l~~plWSa~~l----~~~peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~~~~~~~~~l~~ 86 (300)
T COG2040 20 ELERRGCDLSDPLWSALAL----VDEPEIVRNVHADFLRAGADIITTATYQATPEGFAERVSEDEAKQLIR 86 (300)
T ss_pred HHHhcCCCCCchhhhhhhc----ccCHHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHhcchhHHHHHHH
Confidence 3444555443335554432 2224445555555555432 2345555555555555544444444444
No 477
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.48 E-value=2.7e+02 Score=23.63 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=20.6
Q ss_pred HHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 045403 75 FRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112 (144)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 112 (144)
|......+.+..+++.+....-.++..-++.++.-|++
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34444555555666666544434555566666666554
No 478
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=36.25 E-value=1.6e+02 Score=21.17 Aligned_cols=117 Identities=11% Similarity=0.030 Sum_probs=69.4
Q ss_pred hhccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAK-YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
|.-.-+.+...++.+..+.. ..-.....|+.+++.....|++.+..-+|+-+.+.+ -|..|+.-.... ...
T Consensus 33 f~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yifd~L~~n~------qfE~LL~k~~d~--~~~ 104 (296)
T PF14649_consen 33 FTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIFDILIEND------QFELLLRKGIDK--VNG 104 (296)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHHHHHHHcC------hHHHHHhccccc--cch
Confidence 34445556666665544321 112356779999999999999999999999998753 366666654311 111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH---HhccCCh--HHHHHHHHHhhhc
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFH---LGKMRAH--SEALCLQHVKDIA 129 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~g~~--~~a~~l~~~m~~~ 129 (144)
-...+-+..++-.+.|...|+.+... |.+.|.. .+|...++.+...
T Consensus 105 lk~all~ylk~~~P~d~e~~~mv~l~F~m~~Eia~~~e~~A~~~l~~l~~~ 155 (296)
T PF14649_consen 105 LKMALLDYLKRCCPEDKEKFSMVALHFNMYREIAELWEKRARQILKKLVSQ 155 (296)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222233333356677777766554 3344433 4677777777653
No 479
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.22 E-value=1e+02 Score=18.84 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDELAI 61 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~g~ 61 (144)
++|+.+-++.-.++|+++.+-|.+.|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 567778888899999999999999886
No 480
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.17 E-value=1.9e+02 Score=21.74 Aligned_cols=46 Identities=17% Similarity=0.036 Sum_probs=28.3
Q ss_pred HHHHHHHHH---hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045403 69 HILIKYFRK---EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR 114 (144)
Q Consensus 69 ~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 114 (144)
..++.++.+ ..+.+.+..++..|.+.|..|....-..++.++-..|
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 334444444 3678888888888888777666555555555544444
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=35.82 E-value=1.9e+02 Score=21.73 Aligned_cols=51 Identities=12% Similarity=-0.105 Sum_probs=30.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHH----HHHHHHHHHHhC--cHHHHHHHHH
Q 045403 39 AYCRTGDMESVIHVMRKLDELAISPDYNT----FHILIKYFRKEK--MYMLAYRTMV 89 (144)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g--~~~~a~~~~~ 89 (144)
.+...+++..|..+|+++..+.++|+... +-.+..+|.... ++++|.+.++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 44566777788888877777655444433 344444454443 4556666665
No 482
>PRK11906 transcriptional regulator; Provisional
Probab=35.59 E-value=2.1e+02 Score=22.14 Aligned_cols=113 Identities=5% Similarity=-0.108 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHh-cCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh
Q 045403 10 CFEEAKQLARDFEA-KYDKYD-VVLLNSMLCAYCR---------TGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE 78 (144)
Q Consensus 10 ~~~~a~~~~~~m~~-~~~~p~-~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 78 (144)
+.+.|..+|.+... +...|+ ...|..+-.++.. .....+|..+-.+..+.+- -|......+-.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 34678888988872 223443 3344433333222 1234566666666665433 5777777777778889
Q ss_pred CcHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 79 KMYMLAYRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
++.+.+..+|++-... .|+ ..+|-..--...-+|+.++|.+.+++
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999864 454 33444444444567899999999998
No 483
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.43 E-value=1.6e+02 Score=20.91 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHhccCChHHHHH
Q 045403 46 MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK--KGHQPEEE--LCSSLIFHLGKMRAHSEALC 121 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~--~~~~l~~~~~~~g~~~~a~~ 121 (144)
++.|-.+.++|.+. .--+.-|+--...|.++|..+.|-..+++..+ .+..|+.. .|.--+..+-..++...|.+
T Consensus 74 yEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 45555555555542 01112355555666666666555555544432 23444422 34444444444444444444
Q ss_pred HHH
Q 045403 122 LQH 124 (144)
Q Consensus 122 l~~ 124 (144)
++.
T Consensus 152 l~g 154 (308)
T KOG1585|consen 152 LYG 154 (308)
T ss_pred HHH
Confidence 444
No 484
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=35.38 E-value=78 Score=17.17 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Q 045403 46 MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTM 88 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 88 (144)
.+.+..++..-... ..+..|...|+.++.+.|..+-+..+-
T Consensus 40 ~~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i~ 80 (83)
T PF00531_consen 40 REQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKIE 80 (83)
T ss_dssp HHHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHHH
Confidence 45666677666554 344567888889988888877666553
No 485
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.96 E-value=1.9e+02 Score=21.39 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=16.8
Q ss_pred HHHhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 045403 20 DFEAKYDKYDVV--LLNSMLCAYCRTGDMESVIHVMR 54 (144)
Q Consensus 20 ~m~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~ 54 (144)
.+.+.|..|+.. ...+.+...+..|+.+.+..+++
T Consensus 53 ~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 53 LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 344445544432 11234445556666666555554
No 486
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.84 E-value=2.1e+02 Score=21.96 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=32.7
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 045403 21 FEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS 62 (144)
Q Consensus 21 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 62 (144)
+...|+.-+..+++-.|..+...+-.+.++.+|+.+.-.|.+
T Consensus 308 l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGsk 349 (436)
T KOG2058|consen 308 LEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSK 349 (436)
T ss_pred hhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccH
Confidence 344456677788888888888888888888888888877654
No 487
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.57 E-value=1.6e+02 Score=20.38 Aligned_cols=89 Identities=13% Similarity=-0.030 Sum_probs=58.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCC-----CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAISP-----DYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEE-ELCSSLIFHLG 111 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~ 111 (144)
+-+...|++++|..-|.+..+. |++ ..+.|..-..++.+.+.++.|..--....+. .|+. ....--..+|-
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHH
Confidence 3467899999999999998764 211 2334666667788888888776655555443 3321 12222245677
Q ss_pred ccCChHHHHHHHHHhhhc
Q 045403 112 KMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 112 ~~g~~~~a~~l~~~m~~~ 129 (144)
+...+++|..=+..+.+.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 888899998888877653
No 488
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.53 E-value=1.1e+02 Score=18.68 Aligned_cols=43 Identities=12% Similarity=-0.065 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 83 LAYRTMVDMHKKGHQ-PEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
.+..+|+.|...|+- --+..|..-...+-+.|++.+|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788999999987764 3566888888889999999999999874
No 489
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=34.48 E-value=32 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhCCCCCCHHH
Q 045403 47 ESVIHVMRKLDELAISPDYNT 67 (144)
Q Consensus 47 ~~a~~~~~~m~~~g~~p~~~~ 67 (144)
..|+++|+.+.+.|++|+..+
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v~ 87 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGVT 87 (269)
T ss_pred chHHHHHHHHHhcCCCccccc
Confidence 579999999999999998876
No 490
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.43 E-value=1.5e+02 Score=20.05 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDEL 59 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (144)
..-+.++..+...|+++.|-++|.-+...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 45567777777777888877777777653
No 491
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=34.42 E-value=85 Score=19.85 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=19.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 045403 37 LCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIK 73 (144)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 73 (144)
|..+.+.+....+.++++.+.+.|+..+..|-.-.++
T Consensus 7 i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 7 IKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3344444455555556666655565555555444443
No 492
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.34 E-value=3e+02 Score=23.59 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=38.8
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
+..+|+++.|.+.-...- +..+|.-|...-...|+.+-|+..|++.+.
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 456788888887755543 677899999999999999999999998764
No 493
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=34.33 E-value=2.5e+02 Score=22.79 Aligned_cols=86 Identities=14% Similarity=-0.086 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
.|+...|.+.+.......+...-+..-.|-....+.|....|..++..-..-. ....-++-++-+++....+++.|.+.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 57778888877776544333222333344444555566677777776655433 23446788888899999999999999
Q ss_pred HHHHHHC
Q 045403 88 MVDMHKK 94 (144)
Q Consensus 88 ~~~m~~~ 94 (144)
|.+..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 9988764
No 494
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.14 E-value=95 Score=23.01 Aligned_cols=116 Identities=13% Similarity=-0.025 Sum_probs=74.9
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHHhCcHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT-FHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~ 85 (144)
..|.++.|+++|...+... +|....|..--+++.+.+++..|++=++.-.+ +.||... |-.--.+-...|+++++.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 4688899999988877653 34667777777778888888888777766554 3444332 222233444578999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+.+....+.+..+. +-..+=...-+.+.+.+-...+++.+
T Consensus 203 ~dl~~a~kld~dE~--~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYDEA--NSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccccHH--HHHHHHHhccchhhhhhchhHHHHHH
Confidence 99998888766444 33334445555555555555555433
No 495
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=34.13 E-value=1.4e+02 Score=19.86 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCCCH-HHHHHHHHHHHHhC--
Q 045403 11 FEEAKQLARDFEAKYDKYDV---VLLNSMLCAYCRTGDMESVIHVMRKLDEL-----AISPDY-NTFHILIKYFRKEK-- 79 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~~-~~~~~li~~~~~~g-- 79 (144)
++.|.+..+.--...+. |. .-|...+--+++.....++.+++++-++. .+.|+. .++..+-.+|...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 45556665554333222 33 34555555555555555555555554422 356766 45666666655544
Q ss_pred --c-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 045403 80 --M-------YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112 (144)
Q Consensus 80 --~-------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 112 (144)
+ +++|...|++... ..|+..+|+.-+....+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 2 4555666666654 47999999998888754
No 496
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=34.11 E-value=1.4e+02 Score=22.16 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 045403 45 DMESVIHVMRKLDELAISPDYNTFHILIKY 74 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 74 (144)
-++.|+++.+.+++-|+.+|..||-...+.
T Consensus 281 p~erAekf~k~irkLG~~~dG~sylD~FR~ 310 (350)
T PF14744_consen 281 PYERAEKFNKGIRKLGLSDDGQSYLDQFRQ 310 (350)
T ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Confidence 368888888888888888888777555544
No 497
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.03 E-value=1.4e+02 Score=23.10 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
.+++-.++++.+.+.| .+| .-..-|+.|.+.+++++|..-+++-.
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~ 113 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESI 113 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhh
Confidence 4666777777777654 233 33345777788888888777777644
No 498
>cd08304 DD_superfamily The Death Domain Superfamily of protein-protein interaction domains. The Death Domain (DD) superfamily includes the DD, Pyrin, CARD (Caspase activation and recruitment domain) and DED (Death Effector Domain) families. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. They are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways including those that impact innate immunity, inflammation, differentiation, and cancer.
Probab=34.02 E-value=82 Score=16.99 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 48 SVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 48 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.++++.+.++| ..++..+..++...|..+.
T Consensus 34 ~a~~ll~~l~~~~----~~a~~~~~~vL~~~~~~~l 65 (69)
T cd08304 34 AANELLNILESQY----NHTLQLLFALFEDLGLHNL 65 (69)
T ss_pred HHHHHHHHHHHhC----cchHHHHHHHHHHcCCHhH
Confidence 4555555555544 3455555555555555443
No 499
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.97 E-value=71 Score=16.32 Aligned_cols=20 Identities=20% Similarity=-0.056 Sum_probs=10.8
Q ss_pred HHHHhCcHHHHHHHHHHHHH
Q 045403 74 YFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~ 93 (144)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44455666666666655554
No 500
>PRK13270 treF trehalase; Provisional
Probab=33.88 E-value=2.4e+02 Score=22.39 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=40.6
Q ss_pred HHHHHHhCcHHHHHHHHHHHH----HCCCCCC-----------HHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 72 IKYFRKEKMYMLAYRTMVDMH----KKGHQPE-----------EELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~----~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+.++..+|+.+.|..+.+.+. +.|..|+ +..+..|+..|.+ ++.+-+.+.+..+++.
T Consensus 181 ~~GLl~sg~~~~a~~mi~Nf~~li~~yGfIPNG~R~YYl~RSQPP~l~~Mv~~y~~-~~~~~~~~~lp~l~~E 252 (549)
T PRK13270 181 MLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYYLSRSQPPVFALMVELFEE-DGVRGARRYLDHLKME 252 (549)
T ss_pred HHHhhhcCcHHHHHHHHHHHHHHHHHcCcCcCCchhccccCCCCHhHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 677888899999999888875 4566554 3456788888887 4556666666655543
Done!