Query 045403
Match_columns 144
No_of_seqs 130 out of 1367
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 22:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 9.5E-33 3.2E-37 203.5 17.9 139 2-141 33-180 (501)
2 4g26_A Pentatricopeptide repea 100.0 2E-31 6.9E-36 196.4 18.6 134 1-134 67-209 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 3.7E-27 1.3E-31 181.8 8.1 114 1-114 133-250 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 5.9E-23 2E-27 158.8 14.0 111 29-140 126-240 (1134)
5 2xpi_A Anaphase-promoting comp 99.6 2.6E-14 8.8E-19 106.2 15.5 26 31-56 408-433 (597)
6 2xpi_A Anaphase-promoting comp 99.6 4.5E-14 1.6E-18 104.8 16.7 124 3-128 415-544 (597)
7 2fo7_A Synthetic consensus TPR 99.4 5.1E-11 1.8E-15 71.4 15.5 124 3-129 9-132 (136)
8 1w3b_A UDP-N-acetylglucosamine 99.4 8.9E-11 3.1E-15 83.1 16.1 124 3-129 245-368 (388)
9 1w3b_A UDP-N-acetylglucosamine 99.3 6E-10 2.1E-14 78.8 16.8 122 5-129 213-334 (388)
10 2ho1_A Type 4 fimbrial biogene 99.3 7.6E-10 2.6E-14 73.7 15.9 123 4-128 80-203 (252)
11 2vq2_A PILW, putative fimbrial 99.2 1.6E-09 5.5E-14 70.5 16.5 121 5-127 18-140 (225)
12 3as5_A MAMA; tetratricopeptide 99.2 1.1E-09 3.6E-14 69.1 14.8 120 5-127 52-171 (186)
13 2vq2_A PILW, putative fimbrial 99.2 1.9E-09 6.5E-14 70.1 15.9 125 3-129 50-176 (225)
14 3as5_A MAMA; tetratricopeptide 99.2 1.4E-09 4.9E-14 68.5 14.6 125 3-130 16-140 (186)
15 2ho1_A Type 4 fimbrial biogene 99.2 2.9E-09 1E-13 70.8 16.6 126 3-130 113-239 (252)
16 2q7f_A YRRB protein; TPR, prot 99.2 2E-09 6.8E-14 71.0 15.7 121 4-127 66-186 (243)
17 2y4t_A DNAJ homolog subfamily 99.2 1.4E-09 4.9E-14 78.0 15.6 122 3-128 34-171 (450)
18 2y4t_A DNAJ homolog subfamily 99.2 1.1E-09 3.9E-14 78.5 14.9 123 3-129 68-206 (450)
19 2pl2_A Hypothetical conserved 99.2 1.8E-09 6.3E-14 71.1 14.6 118 5-125 15-143 (217)
20 2q7f_A YRRB protein; TPR, prot 99.2 3E-09 1E-13 70.1 15.6 125 3-130 99-223 (243)
21 3vtx_A MAMA; tetratricopeptide 99.2 6.3E-09 2.2E-13 66.2 16.5 120 4-126 14-133 (184)
22 3mkr_A Coatomer subunit epsilo 99.2 1.3E-09 4.6E-14 75.0 14.0 96 29-127 129-227 (291)
23 4eqf_A PEX5-related protein; a 99.2 1.4E-09 4.6E-14 76.3 13.9 125 3-129 185-310 (365)
24 2pl2_A Hypothetical conserved 99.1 1.5E-08 5.1E-13 66.7 16.9 125 3-131 47-182 (217)
25 4eqf_A PEX5-related protein; a 99.1 4.7E-09 1.6E-13 73.6 14.2 64 64-128 212-275 (365)
26 1xnf_A Lipoprotein NLPI; TPR, 99.1 8.9E-09 3.1E-13 69.0 14.8 125 5-131 15-142 (275)
27 3u4t_A TPR repeat-containing p 99.1 1.4E-08 4.6E-13 68.2 15.6 125 3-129 11-137 (272)
28 1fch_A Peroxisomal targeting s 99.1 2.9E-08 9.8E-13 69.3 17.7 88 4-93 73-160 (368)
29 1fch_A Peroxisomal targeting s 99.1 7.2E-09 2.5E-13 72.4 14.5 125 3-129 189-314 (368)
30 4i17_A Hypothetical protein; T 99.1 3.3E-08 1.1E-12 65.1 16.8 124 4-129 16-146 (228)
31 3uq3_A Heat shock protein STI1 99.1 4E-09 1.4E-13 69.9 12.4 86 5-92 15-106 (258)
32 3mkr_A Coatomer subunit epsilo 99.1 1.5E-08 5.1E-13 69.8 15.3 129 2-134 137-269 (291)
33 3hym_B Cell division cycle pro 99.1 9.5E-09 3.2E-13 70.5 14.2 121 5-127 169-297 (330)
34 4gyw_A UDP-N-acetylglucosamine 99.1 1.7E-08 5.7E-13 77.6 16.8 124 3-130 17-141 (723)
35 3hym_B Cell division cycle pro 99.1 1.3E-08 4.4E-13 69.8 14.7 123 4-128 134-264 (330)
36 1xnf_A Lipoprotein NLPI; TPR, 99.1 1.7E-08 5.8E-13 67.7 14.9 124 3-130 51-174 (275)
37 3cv0_A Peroxisome targeting si 99.1 9.7E-09 3.3E-13 70.4 14.0 122 5-129 148-269 (327)
38 3vtx_A MAMA; tetratricopeptide 99.1 4.6E-08 1.6E-12 62.2 16.1 123 3-128 47-169 (184)
39 3uq3_A Heat shock protein STI1 99.0 8.8E-09 3E-13 68.3 13.1 124 4-128 47-201 (258)
40 3cv0_A Peroxisome targeting si 99.0 6.8E-09 2.3E-13 71.1 12.8 122 3-126 180-312 (327)
41 1hh8_A P67PHOX, NCF-2, neutrop 99.0 5.9E-08 2E-12 63.0 16.1 122 4-130 15-151 (213)
42 1a17_A Serine/threonine protei 99.0 5.3E-08 1.8E-12 60.5 14.3 123 3-128 21-145 (166)
43 3ieg_A DNAJ homolog subfamily 99.0 5.3E-08 1.8E-12 67.3 15.4 88 4-93 12-99 (359)
44 3ieg_A DNAJ homolog subfamily 99.0 9.5E-08 3.2E-12 66.0 15.8 121 4-128 46-182 (359)
45 1na0_A Designed protein CTPR3; 99.0 7.6E-08 2.6E-12 56.6 13.3 99 30-130 9-107 (125)
46 2gw1_A Mitochondrial precursor 98.9 8.1E-08 2.8E-12 69.7 15.1 90 3-95 14-103 (514)
47 2gw1_A Mitochondrial precursor 98.9 2.2E-08 7.4E-13 72.8 11.8 123 3-129 245-367 (514)
48 4gyw_A UDP-N-acetylglucosamine 98.9 8.3E-08 2.8E-12 73.8 15.4 123 3-128 51-173 (723)
49 4ga2_A E3 SUMO-protein ligase 98.9 2.8E-08 9.6E-13 61.8 10.6 122 4-128 6-128 (150)
50 2h6f_A Protein farnesyltransfe 98.9 6.1E-08 2.1E-12 69.3 13.5 125 4-131 106-231 (382)
51 2vsy_A XCC0866; transferase, g 98.9 2.2E-07 7.6E-12 69.2 16.9 126 3-131 31-159 (568)
52 3fp2_A TPR repeat-containing p 98.9 8.9E-08 3E-12 70.0 14.4 122 4-128 285-406 (537)
53 2e2e_A Formate-dependent nitri 98.9 4.3E-08 1.5E-12 62.1 11.2 124 4-130 19-145 (177)
54 1ouv_A Conserved hypothetical 98.9 5.1E-07 1.7E-11 60.8 17.2 115 5-128 16-142 (273)
55 4gco_A Protein STI-1; structur 98.9 2E-07 6.7E-12 56.3 13.6 96 31-128 14-109 (126)
56 2fo7_A Synthetic consensus TPR 98.9 2.2E-07 7.4E-12 55.2 13.7 98 31-130 2-99 (136)
57 2vyi_A SGTA protein; chaperone 98.9 2.2E-07 7.5E-12 55.0 13.5 97 30-128 12-108 (131)
58 1na0_A Designed protein CTPR3; 98.9 3.2E-07 1.1E-11 53.9 14.0 106 3-111 17-122 (125)
59 2ond_A Cleavage stimulation fa 98.9 3E-07 1E-11 63.4 15.6 123 4-129 108-232 (308)
60 3fp2_A TPR repeat-containing p 98.9 1.1E-07 3.8E-12 69.5 14.1 125 4-132 252-376 (537)
61 4abn_A Tetratricopeptide repea 98.9 6.4E-08 2.2E-12 70.9 12.7 123 3-129 110-250 (474)
62 3nf1_A KLC 1, kinesin light ch 98.9 6.5E-08 2.2E-12 65.7 12.0 127 3-129 35-182 (311)
63 1b89_A Protein (clathrin heavy 98.9 3E-09 1E-13 77.1 5.4 22 105-126 212-233 (449)
64 3edt_B KLC 2, kinesin light ch 98.8 3.4E-08 1.2E-12 66.1 10.2 126 3-128 93-280 (283)
65 1ouv_A Conserved hypothetical 98.8 9.1E-07 3.1E-11 59.6 17.2 111 8-127 55-177 (273)
66 4abn_A Tetratricopeptide repea 98.8 1.2E-07 4E-12 69.5 13.4 126 3-131 145-289 (474)
67 2vgx_A Chaperone SYCD; alterna 98.8 7.2E-08 2.5E-12 59.9 10.6 110 17-129 9-118 (148)
68 2kck_A TPR repeat; tetratricop 98.8 2.9E-07 9.7E-12 53.2 12.6 101 29-131 5-108 (112)
69 3nf1_A KLC 1, kinesin light ch 98.8 6E-08 2.1E-12 65.9 10.8 126 3-128 119-306 (311)
70 1p5q_A FKBP52, FK506-binding p 98.8 2.7E-07 9.4E-12 64.7 14.1 122 3-126 155-291 (336)
71 3edt_B KLC 2, kinesin light ch 98.8 3.1E-08 1.1E-12 66.3 8.9 126 3-128 51-197 (283)
72 3u4t_A TPR repeat-containing p 98.8 4.8E-07 1.6E-11 60.6 14.5 127 3-132 45-174 (272)
73 2lni_A Stress-induced-phosphop 98.8 2.9E-07 1E-11 54.8 12.0 102 26-129 12-113 (133)
74 3gyz_A Chaperone protein IPGC; 98.8 3.7E-07 1.3E-11 57.0 12.5 99 29-129 35-133 (151)
75 3mv2_B Coatomer subunit epsilo 98.8 3.6E-07 1.2E-11 63.5 13.5 122 3-128 108-239 (310)
76 2vsy_A XCC0866; transferase, g 98.8 3.2E-07 1.1E-11 68.3 14.1 121 8-131 2-122 (568)
77 3qou_A Protein YBBN; thioredox 98.7 3.9E-07 1.3E-11 62.4 13.0 124 4-131 126-250 (287)
78 4gco_A Protein STI-1; structur 98.7 1.7E-06 5.8E-11 52.1 14.3 100 4-107 22-122 (126)
79 3qky_A Outer membrane assembly 98.7 1.4E-06 4.7E-11 58.4 15.3 125 4-131 24-179 (261)
80 4ga2_A E3 SUMO-protein ligase 98.7 6.5E-07 2.2E-11 55.5 12.5 109 3-115 39-149 (150)
81 4i17_A Hypothetical protein; T 98.7 1.1E-06 3.9E-11 57.5 13.9 124 3-130 50-210 (228)
82 1elw_A TPR1-domain of HOP; HOP 98.7 3E-06 1E-10 49.1 14.4 97 30-128 4-100 (118)
83 1b89_A Protein (clathrin heavy 98.7 3.9E-07 1.3E-11 66.2 12.3 103 1-125 100-202 (449)
84 3gyz_A Chaperone protein IPGC; 98.7 6.1E-07 2.1E-11 56.0 11.8 94 4-101 45-138 (151)
85 2lni_A Stress-induced-phosphop 98.7 1.1E-06 3.8E-11 52.3 12.7 109 3-114 24-132 (133)
86 2ooe_A Cleavage stimulation fa 98.7 1.2E-06 4E-11 64.7 15.2 123 3-129 329-454 (530)
87 3urz_A Uncharacterized protein 98.7 1.6E-06 5.5E-11 56.5 14.0 104 4-110 13-132 (208)
88 1elw_A TPR1-domain of HOP; HOP 98.7 3.9E-06 1.3E-10 48.6 14.3 91 3-95 12-102 (118)
89 2ond_A Cleavage stimulation fa 98.7 6.5E-06 2.2E-10 56.7 17.5 120 7-129 69-198 (308)
90 1wao_1 Serine/threonine protei 98.7 2.7E-07 9.1E-12 67.8 10.8 119 3-124 14-134 (477)
91 2r5s_A Uncharacterized protein 98.7 4.4E-07 1.5E-11 57.6 10.5 123 4-130 15-138 (176)
92 2vyi_A SGTA protein; chaperone 98.6 2.1E-06 7.1E-11 50.7 12.7 111 3-116 20-130 (131)
93 3q49_B STIP1 homology and U bo 98.6 3.5E-06 1.2E-10 50.6 13.6 100 27-128 6-105 (137)
94 3upv_A Heat shock protein STI1 98.6 1.9E-06 6.6E-11 51.3 12.1 93 32-126 6-98 (126)
95 2kck_A TPR repeat; tetratricop 98.6 1.8E-06 6.1E-11 49.7 11.6 91 3-95 14-107 (112)
96 3upv_A Heat shock protein STI1 98.6 2.8E-06 9.7E-11 50.6 12.7 89 4-94 13-101 (126)
97 2fbn_A 70 kDa peptidylprolyl i 98.6 2.1E-06 7.3E-11 55.3 12.7 121 4-126 47-183 (198)
98 2xcb_A PCRH, regulatory protei 98.6 1.7E-06 5.8E-11 52.9 11.6 99 29-129 17-115 (142)
99 1qqe_A Vesicular transport pro 98.6 1.3E-06 4.6E-11 59.8 12.2 125 4-128 86-227 (292)
100 2h6f_A Protein farnesyltransfe 98.6 1.1E-06 3.8E-11 62.8 12.2 124 4-130 140-270 (382)
101 3sz7_A HSC70 cochaperone (SGT) 98.6 3.8E-06 1.3E-10 52.4 13.4 88 4-93 20-107 (164)
102 4gcn_A Protein STI-1; structur 98.6 2.1E-06 7.3E-11 51.7 11.7 96 31-127 9-110 (127)
103 2xcb_A PCRH, regulatory protei 98.6 2.9E-06 9.9E-11 51.8 12.5 89 4-94 27-115 (142)
104 3sz7_A HSC70 cochaperone (SGT) 98.6 3.3E-06 1.1E-10 52.7 13.0 101 28-130 9-109 (164)
105 2pzi_A Probable serine/threoni 98.6 4.9E-07 1.7E-11 69.0 10.7 122 3-128 441-562 (681)
106 2vgx_A Chaperone SYCD; alterna 98.6 1.8E-06 6.1E-11 53.5 11.5 89 4-94 30-118 (148)
107 1elr_A TPR2A-domain of HOP; HO 98.6 9E-07 3.1E-11 52.4 9.8 88 5-93 14-107 (131)
108 2dba_A Smooth muscle cell asso 98.6 1E-05 3.4E-10 49.0 14.6 100 28-130 26-129 (148)
109 2dba_A Smooth muscle cell asso 98.6 1.2E-05 4E-10 48.7 14.4 103 3-109 36-142 (148)
110 1hxi_A PEX5, peroxisome target 98.5 2.5E-06 8.6E-11 51.0 11.1 94 33-128 20-113 (121)
111 3u3w_A Transcriptional activat 98.5 3.3E-06 1.1E-10 57.7 12.9 126 3-128 83-224 (293)
112 3q49_B STIP1 homology and U bo 98.5 5E-06 1.7E-10 49.9 12.1 89 3-93 17-105 (137)
113 3k9i_A BH0479 protein; putativ 98.5 6.3E-07 2.1E-11 53.0 7.9 104 7-111 2-108 (117)
114 1a17_A Serine/threonine protei 98.5 1.7E-05 5.9E-10 48.8 14.4 101 29-131 12-112 (166)
115 3qky_A Outer membrane assembly 98.5 3.2E-06 1.1E-10 56.6 11.5 127 3-131 60-226 (261)
116 1qqe_A Vesicular transport pro 98.5 2.4E-06 8.3E-11 58.5 11.0 127 3-129 45-187 (292)
117 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.8E-05 6.2E-10 52.0 14.9 127 4-132 13-179 (225)
118 3u3w_A Transcriptional activat 98.5 7.5E-06 2.6E-10 55.9 13.4 124 4-127 124-264 (293)
119 1elr_A TPR2A-domain of HOP; HO 98.5 9.6E-06 3.3E-10 47.8 12.3 100 30-130 4-109 (131)
120 3mv2_B Coatomer subunit epsilo 98.5 9E-06 3.1E-10 56.5 13.5 130 2-137 143-290 (310)
121 3ro3_A PINS homolog, G-protein 98.5 1.9E-06 6.4E-11 52.7 9.2 126 3-128 17-157 (164)
122 3gw4_A Uncharacterized protein 98.5 2.6E-06 8.9E-11 54.5 10.1 121 6-127 3-134 (203)
123 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.6E-11 55.8 8.7 126 3-128 34-175 (203)
124 2ooe_A Cleavage stimulation fa 98.4 2.5E-05 8.5E-10 57.6 16.3 119 8-129 292-420 (530)
125 2r5s_A Uncharacterized protein 98.4 3.8E-06 1.3E-10 53.2 10.3 121 3-127 48-171 (176)
126 4f3v_A ESX-1 secretion system 98.4 8.9E-06 3E-10 55.8 12.4 125 3-132 110-240 (282)
127 2xev_A YBGF; tetratricopeptide 98.4 1.4E-05 4.8E-10 47.4 12.1 88 4-94 11-105 (129)
128 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 7.6E-06 2.6E-10 59.7 12.9 122 3-126 276-412 (457)
129 3ulq_A Response regulator aspa 98.4 4.4E-06 1.5E-10 59.0 11.1 125 4-128 152-292 (383)
130 2qfc_A PLCR protein; TPR, HTH, 98.4 1.3E-05 4.5E-10 54.7 13.0 121 5-125 125-262 (293)
131 2yhc_A BAMD, UPF0169 lipoprote 98.4 2.5E-05 8.6E-10 51.3 13.9 123 3-129 49-213 (225)
132 4gcn_A Protein STI-1; structur 98.4 1.4E-05 4.7E-10 48.0 11.4 101 3-106 16-122 (127)
133 1hxi_A PEX5, peroxisome target 98.4 1.2E-05 4.1E-10 47.9 10.8 90 3-94 25-114 (121)
134 2qfc_A PLCR protein; TPR, HTH, 98.4 5.1E-05 1.7E-09 51.8 15.2 126 3-128 83-224 (293)
135 2pzi_A Probable serine/threoni 98.4 7.5E-06 2.6E-10 62.6 12.0 121 6-130 402-530 (681)
136 3q15_A PSP28, response regulat 98.4 9.5E-06 3.3E-10 57.3 11.8 126 4-129 150-290 (378)
137 2fbn_A 70 kDa peptidylprolyl i 98.4 3.2E-06 1.1E-10 54.4 8.5 121 7-129 16-151 (198)
138 2xev_A YBGF; tetratricopeptide 98.4 3.8E-05 1.3E-09 45.4 12.8 93 35-130 7-106 (129)
139 1ihg_A Cyclophilin 40; ppiase 98.3 1.1E-05 3.6E-10 57.5 11.8 117 3-121 231-362 (370)
140 3sf4_A G-protein-signaling mod 98.3 4.3E-06 1.5E-10 58.8 9.2 126 3-128 195-335 (406)
141 1hh8_A P67PHOX, NCF-2, neutrop 98.3 5.3E-05 1.8E-09 48.8 13.5 92 3-95 45-151 (213)
142 3n71_A Histone lysine methyltr 98.3 6.2E-06 2.1E-10 60.9 9.7 125 5-129 319-464 (490)
143 3ro2_A PINS homolog, G-protein 98.3 4.7E-06 1.6E-10 56.7 8.5 126 3-128 191-331 (338)
144 4a1s_A PINS, partner of inscut 98.3 2E-06 6.8E-11 60.9 6.8 124 4-128 57-211 (411)
145 2c2l_A CHIP, carboxy terminus 98.3 5.5E-05 1.9E-09 51.6 13.7 89 3-93 12-100 (281)
146 3k9i_A BH0479 protein; putativ 98.3 2.7E-06 9.2E-11 50.2 6.0 88 42-130 2-91 (117)
147 3rjv_A Putative SEL1 repeat pr 98.2 8.6E-05 2.9E-09 48.4 13.7 117 5-128 28-157 (212)
148 2ifu_A Gamma-SNAP; membrane fu 98.2 1E-05 3.5E-10 55.7 9.6 123 4-127 85-222 (307)
149 3ro2_A PINS homolog, G-protein 98.2 4.7E-06 1.6E-10 56.7 7.8 125 4-128 14-171 (338)
150 1p5q_A FKBP52, FK506-binding p 98.2 5.6E-05 1.9E-09 52.9 13.4 101 29-130 146-260 (336)
151 3rkv_A Putative peptidylprolyl 98.2 2E-05 7E-10 48.9 10.1 90 4-94 20-126 (162)
152 2e2e_A Formate-dependent nitri 98.2 2.3E-05 7.9E-10 49.3 10.4 91 3-95 52-145 (177)
153 2c2l_A CHIP, carboxy terminus 98.2 4.5E-05 1.5E-09 52.0 12.4 98 29-128 3-100 (281)
154 3qou_A Protein YBBN; thioredox 98.2 8.5E-06 2.9E-10 55.7 8.7 122 3-127 159-282 (287)
155 3q15_A PSP28, response regulat 98.2 3.9E-05 1.3E-09 54.1 12.3 122 4-125 191-328 (378)
156 3ulq_A Response regulator aspa 98.2 2.2E-05 7.5E-10 55.4 11.0 124 3-126 192-332 (383)
157 2if4_A ATFKBP42; FKBP-like, al 98.2 8.9E-06 3E-10 57.0 8.8 122 3-129 187-328 (338)
158 3rkv_A Putative peptidylprolyl 98.2 7E-05 2.4E-09 46.4 11.9 100 29-129 10-126 (162)
159 1klx_A Cysteine rich protein B 98.2 0.00012 4.2E-09 44.6 12.6 117 2-129 2-126 (138)
160 2xm6_A Protein corresponding t 98.2 0.0004 1.4E-08 50.7 17.2 15 44-58 129-143 (490)
161 3urz_A Uncharacterized protein 98.2 5.9E-05 2E-09 49.0 11.5 95 34-131 8-119 (208)
162 4a1s_A PINS, partner of inscut 98.1 7.2E-06 2.5E-10 58.0 7.1 125 4-128 95-251 (411)
163 2ifu_A Gamma-SNAP; membrane fu 98.1 1.9E-05 6.6E-10 54.3 8.6 126 3-129 44-184 (307)
164 3sf4_A G-protein-signaling mod 98.1 1.9E-05 6.6E-10 55.4 8.6 125 4-128 18-175 (406)
165 2l6j_A TPR repeat-containing p 98.1 8.9E-06 3E-10 46.9 5.6 95 29-126 3-104 (111)
166 2xm6_A Protein corresponding t 98.1 0.00087 3E-08 48.9 17.2 113 8-129 56-180 (490)
167 2kat_A Uncharacterized protein 98.1 9.3E-05 3.2E-09 43.1 9.9 79 13-93 3-81 (115)
168 2hr2_A Hypothetical protein; a 98.0 0.00013 4.4E-09 45.9 10.7 90 4-93 20-130 (159)
169 1hz4_A MALT regulatory protein 98.0 0.00019 6.5E-09 50.2 12.4 124 5-128 24-163 (373)
170 1hz4_A MALT regulatory protein 98.0 0.00019 6.6E-09 50.2 12.4 126 4-129 102-244 (373)
171 3rjv_A Putative SEL1 repeat pr 98.0 0.001 3.5E-08 43.2 14.7 116 10-130 68-198 (212)
172 1xi4_A Clathrin heavy chain; a 97.9 0.00022 7.5E-09 58.5 12.6 105 4-126 1143-1247(1630)
173 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.0004 1.4E-08 50.6 12.8 100 29-129 267-380 (457)
174 1na3_A Designed protein CTPR2; 97.9 0.0005 1.7E-08 37.8 10.4 82 29-112 8-89 (91)
175 1ihg_A Cyclophilin 40; ppiase 97.8 0.00054 1.8E-08 48.7 12.1 99 30-129 223-336 (370)
176 4g1t_A Interferon-induced prot 97.8 0.00011 3.8E-09 52.9 8.7 119 10-129 315-459 (472)
177 4g1t_A Interferon-induced prot 97.8 0.00069 2.3E-08 48.7 12.7 119 7-128 225-362 (472)
178 1wao_1 Serine/threonine protei 97.8 0.00054 1.9E-08 50.2 12.0 92 37-130 13-104 (477)
179 2hr2_A Hypothetical protein; a 97.8 0.001 3.4E-08 41.8 11.5 99 30-128 11-130 (159)
180 2l6j_A TPR repeat-containing p 97.8 0.00014 4.9E-09 41.6 7.3 56 3-59 12-67 (111)
181 1na3_A Designed protein CTPR2; 97.8 0.00067 2.3E-08 37.2 9.9 74 3-78 17-90 (91)
182 4b4t_Q 26S proteasome regulato 97.8 0.00073 2.5E-08 48.0 12.2 128 2-129 62-204 (434)
183 4e6h_A MRNA 3'-END-processing 97.7 0.00062 2.1E-08 52.2 11.9 123 5-129 388-533 (679)
184 4e6h_A MRNA 3'-END-processing 97.7 0.00099 3.4E-08 51.1 13.0 125 6-132 445-573 (679)
185 1xi4_A Clathrin heavy chain; a 97.7 0.00099 3.4E-08 54.8 13.2 85 32-127 1223-1307(1630)
186 3ro3_A PINS homolog, G-protein 97.7 0.00025 8.6E-09 42.9 7.7 99 30-128 9-117 (164)
187 2kat_A Uncharacterized protein 97.7 0.0012 4.2E-08 38.2 10.4 79 48-128 3-81 (115)
188 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00036 1.2E-08 48.8 9.2 96 30-128 179-292 (338)
189 3dra_A Protein farnesyltransfe 97.6 0.00095 3.2E-08 46.3 10.8 124 9-134 124-292 (306)
190 4b4t_Q 26S proteasome regulato 97.6 0.0013 4.5E-08 46.7 11.9 126 4-129 13-164 (434)
191 1zu2_A Mitochondrial import re 97.6 0.00037 1.3E-08 43.7 7.9 100 5-109 12-133 (158)
192 3ma5_A Tetratricopeptide repea 97.6 0.00095 3.3E-08 38.0 8.9 65 28-93 5-69 (100)
193 3e4b_A ALGK; tetratricopeptide 97.5 0.0056 1.9E-07 44.4 13.8 16 10-25 194-209 (452)
194 2kc7_A BFR218_protein; tetratr 97.5 0.0018 6.1E-08 36.3 8.8 52 6-58 11-63 (99)
195 3qww_A SET and MYND domain-con 97.5 0.00095 3.3E-08 48.5 9.2 82 44-125 312-407 (433)
196 3ma5_A Tetratricopeptide repea 97.5 0.0015 5E-08 37.2 8.3 65 63-128 5-69 (100)
197 4f3v_A ESX-1 secretion system 97.4 0.0024 8.1E-08 43.8 10.4 102 4-108 144-249 (282)
198 3qwp_A SET and MYND domain-con 97.4 0.0012 4.1E-08 47.9 9.3 59 67-125 331-396 (429)
199 3qww_A SET and MYND domain-con 97.4 0.0014 4.7E-08 47.7 9.5 87 7-93 310-410 (433)
200 3mkq_B Coatomer subunit alpha; 97.4 0.0088 3E-07 38.1 12.6 48 5-58 15-62 (177)
201 3qwp_A SET and MYND domain-con 97.4 0.0028 9.4E-08 46.0 10.5 92 3-94 295-400 (429)
202 3n71_A Histone lysine methyltr 97.3 0.0025 8.7E-08 47.0 10.3 89 39-127 318-420 (490)
203 3mkq_A Coatomer beta'-subunit; 97.3 0.0029 1E-07 48.6 10.9 100 7-127 664-763 (814)
204 2kc7_A BFR218_protein; tetratr 97.3 0.0012 4.3E-08 37.0 6.7 59 36-95 6-65 (99)
205 3e4b_A ALGK; tetratricopeptide 97.2 0.008 2.7E-07 43.6 11.9 109 11-128 161-279 (452)
206 3dra_A Protein farnesyltransfe 97.2 0.025 8.7E-07 39.2 14.4 116 10-128 84-214 (306)
207 1dce_A Protein (RAB geranylger 97.1 0.02 6.7E-07 43.0 13.2 128 11-141 89-235 (567)
208 1pc2_A Mitochondria fission pr 97.1 0.0052 1.8E-07 38.2 8.0 91 5-99 8-103 (152)
209 3ly7_A Transcriptional activat 97.0 0.05 1.7E-06 38.8 13.8 127 9-139 213-348 (372)
210 2uy1_A Cleavage stimulation fa 97.0 0.023 8E-07 41.8 12.4 113 7-128 298-412 (493)
211 1dce_A Protein (RAB geranylger 96.9 0.062 2.1E-06 40.4 14.1 118 9-129 43-173 (567)
212 3q7a_A Farnesyltransferase alp 96.9 0.065 2.2E-06 37.9 14.4 116 10-128 104-236 (349)
213 1wy6_A Hypothetical protein ST 96.7 0.043 1.5E-06 33.7 10.8 84 7-96 73-156 (172)
214 3dss_A Geranylgeranyl transfer 96.5 0.12 4.2E-06 36.1 15.3 123 11-136 126-274 (331)
215 1zu2_A Mitochondrial import re 96.4 0.024 8.1E-07 35.5 7.7 87 41-129 13-120 (158)
216 1klx_A Cysteine rich protein B 96.4 0.07 2.4E-06 32.0 12.4 87 4-96 34-128 (138)
217 2uy1_A Cleavage stimulation fa 96.3 0.2 6.8E-06 36.9 13.2 20 5-24 223-242 (493)
218 3dss_A Geranylgeranyl transfer 96.2 0.18 6E-06 35.4 14.5 128 11-141 90-236 (331)
219 3q7a_A Farnesyltransferase alp 96.2 0.18 6.3E-06 35.6 14.1 121 6-129 65-196 (349)
220 1pc2_A Mitochondria fission pr 96.1 0.12 4E-06 32.1 9.5 85 45-131 13-102 (152)
221 2v5f_A Prolyl 4-hydroxylase su 96.1 0.082 2.8E-06 30.1 8.8 69 29-99 4-78 (104)
222 3ly7_A Transcriptional activat 95.8 0.12 4.1E-06 36.8 9.6 76 27-106 274-349 (372)
223 3bee_A Putative YFRE protein; 95.8 0.11 3.7E-06 29.2 8.4 67 27-94 3-72 (93)
224 2ff4_A Probable regulatory pro 95.8 0.049 1.7E-06 38.9 7.7 79 32-111 173-256 (388)
225 2v5f_A Prolyl 4-hydroxylase su 95.7 0.13 4.4E-06 29.3 9.0 54 5-58 15-74 (104)
226 3u64_A Protein TP_0956; tetrat 95.6 0.26 8.9E-06 34.0 10.3 95 9-105 177-282 (301)
227 1v54_E Cytochrome C oxidase po 95.5 0.16 5.4E-06 29.3 8.6 76 33-109 11-88 (109)
228 2ff4_A Probable regulatory pro 95.2 0.56 1.9E-05 33.4 13.5 63 66-129 172-234 (388)
229 4gns_B Protein CSD3, chitin bi 95.0 0.66 2.2E-05 36.2 12.1 119 7-127 260-398 (754)
230 2y69_E Cytochrome C oxidase su 94.7 0.38 1.3E-05 29.3 8.6 63 45-108 68-130 (152)
231 3ffl_A Anaphase-promoting comp 94.6 0.45 1.5E-05 29.9 8.5 115 25-139 13-161 (167)
232 4h7y_A Dual specificity protei 94.6 0.21 7E-06 31.1 6.7 100 27-128 10-122 (161)
233 3mkq_A Coatomer beta'-subunit; 94.1 0.22 7.5E-06 38.2 7.8 80 40-125 662-748 (814)
234 3bee_A Putative YFRE protein; 93.9 0.44 1.5E-05 26.6 9.2 48 11-59 25-72 (93)
235 1wy6_A Hypothetical protein ST 93.6 0.72 2.4E-05 28.4 13.6 119 7-129 19-154 (172)
236 3u64_A Protein TP_0956; tetrat 92.9 1.5 5.3E-05 30.2 10.3 101 28-130 152-270 (301)
237 4h7y_A Dual specificity protei 92.4 1.1 3.7E-05 27.9 7.3 102 5-109 23-137 (161)
238 2uwj_G Type III export protein 91.6 1.2 3.9E-05 25.7 6.9 75 46-128 22-96 (115)
239 2p58_C Putative type III secre 91.2 1.3 4.4E-05 25.5 7.8 75 46-128 23-97 (116)
240 1nzn_A CGI-135 protein, fissio 91.1 1.5 5.2E-05 26.2 8.7 64 29-93 34-102 (126)
241 1nzn_A CGI-135 protein, fissio 90.9 1.6 5.5E-05 26.1 9.1 86 44-131 15-105 (126)
242 1v54_E Cytochrome C oxidase po 90.5 1.6 5.3E-05 25.2 8.6 57 73-129 17-74 (109)
243 4b4t_R RPN7, 26S proteasome re 89.9 3.1 0.0001 30.1 9.0 99 31-129 132-237 (429)
244 2uwj_G Type III export protein 88.9 2.2 7.4E-05 24.6 7.5 87 10-105 21-107 (115)
245 2p58_C Putative type III secre 88.5 2.3 7.9E-05 24.5 8.6 87 10-105 22-108 (116)
246 4b4t_P 26S proteasome regulato 88.3 5.8 0.0002 28.8 10.4 71 67-137 139-216 (445)
247 2nsz_A Programmed cell death p 88.3 2.3 8E-05 25.3 6.3 69 33-102 10-80 (129)
248 3txn_A 26S proteasome regulato 87.7 5.2 0.00018 28.7 8.7 126 3-129 27-168 (394)
249 3mkq_B Coatomer subunit alpha; 87.6 3.8 0.00013 25.9 10.1 84 37-126 12-115 (177)
250 2y69_E Cytochrome C oxidase su 87.6 3.3 0.00011 25.2 8.6 50 80-129 68-117 (152)
251 1zbp_A Hypothetical protein VP 87.2 2.8 9.5E-05 28.5 6.7 115 3-130 5-130 (273)
252 2ion_A PDCD4, programmed cell 86.0 3.5 0.00012 25.3 6.3 25 33-57 12-36 (152)
253 1zbp_A Hypothetical protein VP 85.4 5.4 0.00018 27.1 7.4 71 38-109 5-77 (273)
254 4fhn_B Nucleoporin NUP120; pro 84.7 14 0.00046 30.3 10.7 99 29-128 841-966 (1139)
255 4b4t_R RPN7, 26S proteasome re 84.5 9.4 0.00032 27.5 11.6 91 3-93 139-236 (429)
256 4gns_B Protein CSD3, chitin bi 84.4 3.5 0.00012 32.2 6.9 51 39-91 346-397 (754)
257 3o48_A Mitochondria fission 1 84.3 5 0.00017 24.2 9.6 70 25-94 35-107 (134)
258 4fhn_B Nucleoporin NUP120; pro 81.4 14 0.00048 30.3 9.5 112 3-117 850-988 (1139)
259 2npu_A FKBP12-rapamycin comple 80.8 4.1 0.00014 24.3 4.8 54 76-131 51-105 (126)
260 2xig_A Ferric uptake regulatio 77.7 9.4 0.00032 23.2 6.9 62 19-81 16-77 (150)
261 2d2s_A Exocyst complex compone 77.4 13 0.00045 24.6 9.7 88 37-127 25-118 (235)
262 3l6a_A Eukaryotic translation 77.2 12 0.00043 26.4 7.2 78 2-79 19-97 (364)
263 1mzb_A Ferric uptake regulatio 77.0 9.3 0.00032 22.7 6.0 61 20-81 8-69 (136)
264 2ion_A PDCD4, programmed cell 76.6 11 0.00036 23.2 8.1 60 2-62 16-77 (152)
265 3ffl_A Anaphase-promoting comp 76.1 12 0.00041 23.5 8.5 90 3-92 28-149 (167)
266 2rg8_A Programmed cell death p 75.5 11 0.00037 23.5 5.9 18 5-22 20-37 (165)
267 3eyy_A Putative iron uptake re 75.0 9.8 0.00033 23.0 5.5 61 19-81 8-68 (145)
268 3fap_B FRAP, FKBP12-rapamycin 74.5 8 0.00027 21.7 4.6 12 81-92 60-71 (94)
269 4b4t_P 26S proteasome regulato 74.5 22 0.00075 25.8 9.3 90 3-92 145-245 (445)
270 2b7e_A PRE-mRNA processing pro 73.8 2.6 8.8E-05 21.6 2.2 34 12-45 3-37 (59)
271 4ets_A Ferric uptake regulatio 73.6 11 0.00037 23.3 5.5 70 11-81 13-85 (162)
272 2fe3_A Peroxide operon regulat 73.2 13 0.00043 22.4 7.0 61 19-80 11-71 (145)
273 2nsz_A Programmed cell death p 72.2 13 0.00043 22.0 9.4 59 2-61 14-74 (129)
274 2w57_A Ferric uptake regulatio 72.1 12 0.00042 22.6 5.5 62 19-81 6-68 (150)
275 3eiq_C Programmed cell death p 71.3 18 0.0006 25.7 6.7 81 31-112 218-300 (358)
276 3rjo_A Endoplasmic reticulum a 67.9 30 0.001 24.7 13.8 87 3-96 205-298 (419)
277 1y8m_A FIS1; mitochondria, unk 67.8 18 0.00062 22.1 11.2 68 27-94 36-106 (144)
278 2fu4_A Ferric uptake regulatio 67.3 12 0.00041 19.8 6.1 58 21-79 8-66 (83)
279 3lpz_A GET4 (YOR164C homolog); 66.4 31 0.0011 24.2 11.9 84 40-123 65-159 (336)
280 3k1s_A PTS system, cellobiose- 65.8 17 0.00058 21.0 5.4 19 5-23 32-50 (109)
281 3mwm_A ZUR, putative metal upt 65.4 9 0.00031 22.9 3.8 49 33-81 16-64 (139)
282 2o03_A Probable zinc uptake re 65.0 10 0.00035 22.4 4.0 46 35-80 15-60 (131)
283 3txn_A 26S proteasome regulato 64.3 37 0.0013 24.4 10.2 92 35-126 104-207 (394)
284 2d2s_A Exocyst complex compone 63.9 29 0.00098 22.9 8.8 88 2-92 25-118 (235)
285 3hzj_A Rabgap1L, RAB GTPase-ac 63.3 33 0.0011 23.4 7.6 45 17-61 176-220 (310)
286 1wty_A Hypothetical protein TT 63.2 17 0.00059 21.0 4.7 76 10-92 3-79 (119)
287 1k1a_A B-cell lymphoma 3-encod 63.2 8.7 0.0003 24.4 3.7 84 3-90 14-101 (241)
288 3eiq_C Programmed cell death p 62.0 39 0.0013 23.9 8.3 61 2-63 224-286 (358)
289 3f3f_C Nucleoporin NUP85; stru 60.7 3.6 0.00012 31.0 1.6 77 7-85 493-569 (570)
290 2zu6_B Programmed cell death p 60.5 18 0.00062 25.0 5.0 78 31-109 167-246 (307)
291 2qfz_A TBC1 domain family memb 60.3 26 0.00088 24.3 5.9 78 51-128 230-314 (345)
292 4b8b_A General negative regula 60.3 55 0.0019 25.0 9.4 68 45-112 464-543 (603)
293 3qye_A TBC1 domain family memb 60.2 21 0.00072 24.6 5.4 45 18-62 211-255 (331)
294 4fke_A Aminopeptidase N; zinc 59.9 66 0.0022 25.8 10.7 79 10-93 704-786 (909)
295 1ug3_A EIF4GI, eukaryotic prot 59.8 11 0.00037 26.3 3.9 59 2-61 18-77 (339)
296 2npu_A FKBP12-rapamycin comple 58.4 27 0.00091 20.8 5.2 54 40-95 50-104 (126)
297 3f3f_C Nucleoporin NUP85; stru 58.3 44 0.0015 25.4 6.9 90 29-120 478-569 (570)
298 2qq8_A TBC1 domain family memb 58.0 20 0.00069 24.8 5.0 40 21-60 219-258 (334)
299 3o48_A Mitochondria fission 1 57.8 28 0.00097 20.9 9.5 66 63-130 38-108 (134)
300 2yru_A Steroid receptor RNA ac 57.5 26 0.0009 20.5 6.1 46 49-94 45-90 (118)
301 1ug3_A EIF4GI, eukaryotic prot 57.1 7.4 0.00025 27.2 2.6 67 32-99 13-80 (339)
302 2rg8_A Programmed cell death p 55.8 34 0.0012 21.2 6.0 60 32-93 12-73 (165)
303 3l6a_A Eukaryotic translation 55.8 51 0.0018 23.3 8.7 77 31-112 13-95 (364)
304 2ijq_A Hypothetical protein; s 54.9 35 0.0012 21.2 6.7 60 33-93 36-103 (161)
305 2zu6_B Programmed cell death p 53.9 51 0.0018 22.7 7.8 61 2-63 173-235 (307)
306 4ets_A Ferric uptake regulatio 52.7 38 0.0013 20.8 5.6 60 57-117 25-86 (162)
307 2rfa_A Transient receptor pote 52.0 20 0.00069 22.6 4.0 86 36-127 124-221 (232)
308 3mwm_A ZUR, putative metal upt 51.6 13 0.00043 22.3 2.8 44 2-45 20-63 (139)
309 1vf6_C Maguk P55 subfamily mem 51.0 25 0.00086 18.3 4.3 53 84-136 16-71 (72)
310 3esl_A Checkpoint serine/threo 50.6 48 0.0016 21.4 7.4 88 11-101 60-151 (202)
311 1y8m_A FIS1; mitochondria, unk 50.1 41 0.0014 20.5 12.0 69 62-131 36-108 (144)
312 3twr_A Tankyrase-2; ankyrin re 50.0 10 0.00035 22.5 2.3 108 4-124 14-129 (165)
313 3t8k_A Uncharacterized protein 50.0 43 0.0015 20.7 6.1 92 4-99 12-108 (186)
314 1wgl_A TOLL-interacting protei 49.8 24 0.00083 17.8 4.7 22 43-64 36-57 (59)
315 3hra_A Ankyrin repeat family p 49.5 9.9 0.00034 23.4 2.2 15 5-19 12-26 (201)
316 4a1g_A Mitotic checkpoint seri 49.1 44 0.0015 20.5 6.9 65 61-128 64-129 (152)
317 1dp3_A TRAM protein; helix-loo 48.7 15 0.00051 18.3 2.2 41 4-44 5-45 (55)
318 2i2x_B MTAC, methyltransferase 48.2 20 0.00069 23.9 3.6 39 41-79 47-85 (258)
319 2o03_A Probable zinc uptake re 48.2 15 0.00052 21.6 2.7 41 4-44 19-59 (131)
320 3esl_A Checkpoint serine/threo 48.1 53 0.0018 21.2 9.2 80 47-128 61-143 (202)
321 3pvs_A Replication-associated 46.5 81 0.0028 22.9 8.4 103 11-115 167-305 (447)
322 1q2z_A ATP-dependent DNA helic 46.3 6.4 0.00022 23.1 0.8 51 44-97 41-95 (120)
323 1mzb_A Ferric uptake regulatio 44.4 18 0.00062 21.4 2.7 41 4-44 26-67 (136)
324 2dod_A Transcription elongatio 44.3 22 0.00075 19.4 2.7 35 11-45 16-50 (82)
325 2xig_A Ferric uptake regulatio 44.2 51 0.0017 19.8 5.7 62 54-116 16-77 (150)
326 3ygs_P Procaspase 9; apoptosis 44.0 40 0.0014 18.7 4.8 65 51-121 25-89 (97)
327 3aji_A 26S proteasome non-ATPa 43.0 25 0.00084 22.1 3.3 50 3-53 11-60 (231)
328 1uzc_A Hypothetical protein FL 42.9 23 0.00078 18.7 2.6 31 11-41 14-44 (71)
329 4a1g_A Mitotic checkpoint seri 42.6 57 0.002 20.0 7.0 54 48-101 83-137 (152)
330 3ltj_A Alpharep-4; protein eng 42.5 57 0.002 20.0 9.4 17 99-115 151-167 (201)
331 1oai_A Nuclear RNA export fact 42.3 29 0.00097 17.5 2.8 22 8-29 33-55 (59)
332 3jxi_A Vanilloid receptor-rela 41.5 5.9 0.0002 25.7 0.1 116 3-124 10-161 (260)
333 1jog_A Hypothetical protein HI 41.2 21 0.00072 21.6 2.6 92 32-128 42-141 (146)
334 3qil_A Clathrin heavy chain 1; 41.0 52 0.0018 19.5 4.1 47 36-85 38-84 (125)
335 2p1h_A APAF-1, apoptotic prote 40.3 45 0.0015 18.1 7.3 63 49-119 24-86 (94)
336 2wvi_A Mitotic checkpoint seri 40.1 66 0.0022 20.0 6.9 42 84-125 79-121 (164)
337 3cqc_A Nuclear pore complex pr 40.1 23 0.00079 24.0 2.9 25 104-128 38-62 (270)
338 4b4t_S RPN3, 26S proteasome re 39.9 1.2E+02 0.004 22.8 11.0 59 30-92 231-297 (523)
339 1zl8_A LIN-7; heterodimer, alp 39.9 35 0.0012 16.7 4.6 21 79-99 7-27 (53)
340 1x87_A Urocanase protein; stru 39.6 6 0.0002 29.4 -0.1 47 8-67 211-257 (551)
341 3lxu_X Tripeptidyl-peptidase 2 38.9 1.8E+02 0.0063 24.8 8.5 83 31-115 1235-1332(1354)
342 4aez_C MAD3, mitotic spindle c 38.5 83 0.0028 20.7 6.4 46 82-127 131-177 (223)
343 2fkn_A Urocanate hydratase; ro 38.4 6.1 0.00021 29.3 -0.2 47 8-67 212-258 (552)
344 1rw2_A ATP-dependent DNA helic 38.3 8.4 0.00029 23.7 0.5 50 44-96 72-125 (152)
345 2w57_A Ferric uptake regulatio 37.5 25 0.00084 21.3 2.5 35 10-44 32-66 (150)
346 1uwk_A Urocanate hydratase; hy 37.3 5.8 0.0002 29.4 -0.4 47 8-67 216-262 (557)
347 3eu9_A Huntingtin-interacting 37.2 41 0.0014 21.0 3.7 108 4-124 15-130 (240)
348 3ltm_A Alpha-REP4; protein eng 36.9 74 0.0025 19.6 9.4 15 100-114 157-171 (211)
349 3f6q_A Integrin-linked protein 36.1 42 0.0014 20.1 3.5 111 4-124 11-126 (179)
350 2fe3_A Peroxide operon regulat 36.0 69 0.0024 19.0 7.1 61 55-116 12-72 (145)
351 3r88_A Anthranilate phosphorib 35.9 1.2E+02 0.004 21.6 6.3 64 29-94 22-88 (377)
352 2qq8_A TBC1 domain family memb 34.9 28 0.00095 24.1 2.7 41 87-127 215-255 (334)
353 3lxu_X Tripeptidyl-peptidase 2 34.5 1.7E+02 0.0059 24.9 7.4 78 11-91 1265-1342(1354)
354 2ko4_A Mediator of RNA polymer 34.1 27 0.00094 18.9 2.0 31 60-90 31-61 (81)
355 3qye_A TBC1 domain family memb 33.7 61 0.0021 22.2 4.3 45 51-95 209-253 (331)
356 2jp7_A MRNA export factor MEX6 33.7 15 0.0005 18.5 0.9 21 9-30 33-53 (57)
357 4ady_A RPN2, 26S proteasome re 33.6 1.6E+02 0.0056 24.0 7.0 137 4-144 533-673 (963)
358 2wpv_A GET4, UPF0363 protein Y 33.2 1.2E+02 0.0041 21.0 6.9 110 18-127 80-215 (312)
359 2qfz_A TBC1 domain family memb 33.0 81 0.0028 21.8 4.9 82 47-132 189-276 (345)
360 3v30_A DNA-binding protein rfx 32.3 28 0.00096 20.7 2.2 111 3-124 7-123 (172)
361 2ijq_A Hypothetical protein; s 31.7 93 0.0032 19.3 8.4 48 79-126 46-101 (161)
362 1uhw_A Pleckstrin; three-helix 31.6 72 0.0025 18.3 3.7 48 14-61 8-71 (109)
363 4gq2_M Nucleoporin NUP120; bet 31.4 2.1E+02 0.0071 23.1 9.3 87 36-128 816-925 (950)
364 2yru_A Steroid receptor RNA ac 31.1 81 0.0028 18.4 8.1 43 86-128 47-89 (118)
365 3hzj_A Rabgap1L, RAB GTPase-ac 31.0 77 0.0026 21.5 4.4 44 52-95 176-219 (310)
366 2zk9_X Protein-glutaminase; de 30.6 1E+02 0.0035 19.4 4.5 21 43-63 40-60 (185)
367 1q02_A Sequestosome 1; helical 30.6 54 0.0018 16.1 4.3 38 14-54 10-48 (52)
368 2e2a_A Protein (enzyme IIA); h 30.3 41 0.0014 19.2 2.5 19 5-23 30-48 (105)
369 3bqo_A Telomeric repeat-bindin 30.3 1.1E+02 0.0039 19.8 8.4 48 81-128 94-145 (211)
370 3a54_A Protein-glutaminase; mu 30.2 79 0.0027 21.4 4.0 37 27-63 119-174 (305)
371 3se6_A Endoplasmic reticulum a 30.2 2.2E+02 0.0076 23.1 13.7 79 10-95 766-848 (967)
372 1wcr_A PTS system, N, N'-diace 30.0 42 0.0015 19.1 2.5 19 5-23 28-46 (103)
373 4aez_C MAD3, mitotic spindle c 29.9 1.2E+02 0.0041 19.9 6.6 55 47-101 131-186 (223)
374 2p22_A Suppressor protein STP2 29.6 1.1E+02 0.0037 19.3 4.9 50 63-113 109-158 (174)
375 1ixm_A SPO0B, protein (sporula 28.4 70 0.0024 20.3 3.6 46 46-93 15-60 (192)
376 3utm_A Tankyrase-1; tankyrase, 28.3 35 0.0012 22.9 2.3 108 4-125 30-146 (351)
377 3kae_A CDC27, possible protein 28.0 1.2E+02 0.0042 19.4 12.3 122 4-129 71-237 (242)
378 2etb_A Transient receptor pote 27.8 25 0.00086 22.6 1.5 25 38-62 7-31 (256)
379 2wpv_A GET4, UPF0363 protein Y 27.7 1.5E+02 0.0052 20.4 13.5 119 6-124 24-158 (312)
380 2fv2_A RCD1 required for cell 27.3 92 0.0032 21.1 4.1 47 45-91 188-235 (268)
381 3cqc_A Nuclear pore complex pr 26.9 65 0.0022 21.7 3.4 27 31-57 35-61 (270)
382 2vkj_A TM1634; membrane protei 26.7 83 0.0028 17.5 3.1 34 109-142 62-95 (106)
383 4g8k_A 2-5A-dependent ribonucl 26.4 87 0.003 21.0 4.1 12 88-99 289-300 (337)
384 3pvs_A Replication-associated 26.2 1.9E+02 0.0064 21.0 8.7 89 8-96 205-326 (447)
385 2ve8_A FTSK, DNA translocase F 26.0 59 0.002 17.3 2.4 17 11-27 38-54 (73)
386 3ibx_A TENA, HP1287, putative 25.6 1.4E+02 0.0046 19.2 6.6 14 6-19 64-77 (221)
387 2bn5_A PSI; nuclear protein, s 24.5 56 0.0019 14.3 3.0 21 72-92 9-29 (33)
388 3m6y_A 4-hydroxy-2-oxoglutarat 24.5 50 0.0017 22.2 2.3 83 46-128 170-269 (275)
389 2xdt_A Endoplasmic reticulum a 24.3 2.8E+02 0.0095 22.3 13.3 78 9-95 697-780 (897)
390 1v3f_A Pleckstrin 2; three-hel 24.0 1.1E+02 0.0039 17.7 4.4 48 14-61 8-71 (120)
391 1lsh_A Lipovitellin (LV-1N, LV 24.0 3E+02 0.01 22.6 10.2 19 99-117 453-471 (1056)
392 3ezx_A MMCP 1, monomethylamine 24.0 49 0.0017 21.4 2.3 40 6-45 13-52 (215)
393 3l8r_A PTCA, putative PTS syst 23.6 63 0.0022 19.0 2.5 19 5-23 47-65 (120)
394 2pnn_A Transient receptor pote 23.5 38 0.0013 22.0 1.7 116 3-124 18-169 (273)
395 3v31_A Ankyrin repeat family A 23.4 1.2E+02 0.004 17.7 4.0 111 3-124 8-123 (167)
396 4gpm_A Engineered protein OR26 23.0 1.3E+02 0.0045 18.1 4.6 104 6-124 12-124 (169)
397 3bge_A Predicted ATPase; struc 22.9 1.6E+02 0.0055 19.0 8.1 61 36-96 10-78 (201)
398 1wdy_A 2-5A-dependent ribonucl 22.8 41 0.0014 21.6 1.8 48 41-88 190-239 (285)
399 2es9_A Putative cytoplasmic pr 22.7 1.1E+02 0.0038 17.1 3.2 14 46-59 13-26 (115)
400 3ezx_A MMCP 1, monomethylamine 22.1 79 0.0027 20.4 3.0 40 41-80 13-52 (215)
401 1wxp_A THO complex subunit 1; 22.1 86 0.0029 17.7 2.9 44 46-91 57-100 (110)
402 3m0z_A Putative aldolase; MCSG 22.0 48 0.0016 22.0 1.9 83 46-128 147-246 (249)
403 1bd8_A P19INK4D CDK4/6 inhibit 21.7 34 0.0012 19.9 1.1 110 3-125 7-123 (156)
404 3mv2_A Coatomer subunit alpha; 21.7 2.1E+02 0.0073 20.0 9.0 17 7-23 126-142 (325)
405 2ets_A Hypothetical protein; s 21.5 1.2E+02 0.0041 18.0 3.4 36 29-66 9-44 (128)
406 2dzn_A Probable 26S proteasome 21.3 34 0.0012 21.3 1.1 49 4-53 8-56 (228)
407 4b4t_O 26S proteasome regulato 21.2 2.3E+02 0.0077 20.1 9.9 82 3-84 84-188 (393)
408 1gp8_A Protein (scaffolding pr 21.1 75 0.0026 14.5 3.5 26 102-127 12-37 (40)
409 2jtt_C Calcyclin-binding prote 20.8 72 0.0025 14.2 3.0 26 85-113 9-34 (35)
410 3ljn_A Hypothetical protein; a 20.7 77 0.0026 21.6 2.9 14 111-124 181-194 (364)
411 2f6m_A Suppressor protein STP2 20.7 1E+02 0.0035 15.9 5.0 42 33-75 5-46 (65)
412 1fkm_A Protein (GYP1P), ORF YO 20.4 93 0.0032 22.1 3.3 45 51-95 217-261 (396)
413 2pk8_A Uncharacterized protein 20.3 1.1E+02 0.0039 17.1 2.9 21 47-67 20-40 (103)
414 1fkm_A Protein (GYP1P), ORF YO 20.2 1.4E+02 0.0049 21.2 4.2 45 86-130 217-261 (396)
415 2cos_A Serine/threonine protei 20.1 96 0.0033 15.4 3.2 34 18-56 13-48 (54)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.5e-33 Score=203.51 Aligned_cols=139 Identities=12% Similarity=0.059 Sum_probs=102.9
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD---------MESVIHVMRKLDELAISPDYNTFHILI 72 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~g~~p~~~~~~~li 72 (144)
|++|+|.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|.+.|+.||..||+++|
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 67888888888888888888888888888888777777776543 567777777777777777777777777
Q ss_pred HHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHHHHHh
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPFMRKF 141 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~ 141 (144)
.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+ ....|...+|..
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~ 180 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAA 180 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777765 333444444443
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2e-31 Score=196.44 Aligned_cols=134 Identities=9% Similarity=0.047 Sum_probs=126.0
Q ss_pred ChhhhhccCC---------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 045403 1 MISAFCRGGC---------FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHIL 71 (144)
Q Consensus 1 ll~~~~~~g~---------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 71 (144)
||.+|++.+. +++|.++|++|...|+.||..|||++|++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 67 Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 67 LLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp HHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 4677776554 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCc
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCA 134 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~ 134 (144)
|.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.+++++|++....++
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 999999999999999999999999999999999999999999999999999999997544433
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.94 E-value=3.7e-27 Score=181.85 Aligned_cols=114 Identities=11% Similarity=0.204 Sum_probs=106.2
Q ss_pred ChhhhhccCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 045403 1 MISAFCRGGCFEEAKQLARDFE---AKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK 77 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~---~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 77 (144)
||++||+.|++++|.++|++|. ..|..||++|||+||++|++.|++++|.++|++|.+.|+.||.+|||++|+++++
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK 212 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence 5899999999999999998876 4589999999999999999999999999999999999999999999999999999
Q ss_pred hCc-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045403 78 EKM-YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR 114 (144)
Q Consensus 78 ~g~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 114 (144)
.|+ .++|.++|++|.+.|+.||..+|++++.+..+.+
T Consensus 213 ~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 998 5789999999999999999999999987666543
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=5.9e-23 Score=158.76 Aligned_cols=111 Identities=5% Similarity=0.023 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhh---hCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLD---ELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSS 105 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 105 (144)
-..|||++|++|++.|++++|.++|.+|. +.|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45799999999999999999999998876 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHhhhcCCCCcHHHHHH
Q 045403 106 LIFHLGKMRAH-SEALCLQHVKDIAKDRCAMPFMRK 140 (144)
Q Consensus 106 l~~~~~~~g~~-~~a~~l~~~m~~~~~~~~~~~~~~ 140 (144)
+|.++++.|+. ++|.++|++|.+ +...|...+|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~ 240 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcc
Confidence 99999999985 789999999986 44556666655
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.62 E-value=2.6e-14 Score=106.17 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKL 56 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m 56 (144)
.+|+.++.+|.+.|++++|.++|+++
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444444333
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.62 E-value=4.5e-14 Score=104.84 Aligned_cols=124 Identities=9% Similarity=-0.063 Sum_probs=68.3
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.+...|.+.|+++
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHH
Confidence 445555666666666666554432 2555555555555555555556555555554322 34555555555555555555
Q ss_pred HHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 83 LAYRTMVDMHKK----GHQPE--EELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 83 ~a~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++++++.+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555555555443 44454 45555555555555555555555555543
No 7
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.41 E-value=5.1e-11 Score=71.41 Aligned_cols=124 Identities=17% Similarity=0.077 Sum_probs=107.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.++++++.+.... +...+..+...+...|++++|..+++++.+.+. .+...+..+...+...|+++
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhcCHH
Confidence 4677889999999999999876543 778899999999999999999999999987543 56778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+|..+++++.+.. +.+...+..+..++.+.|++++|.+.++++...
T Consensus 87 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 87 EAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999998753 346778888999999999999999999987653
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.35 E-value=8.9e-11 Score=83.08 Aligned_cols=124 Identities=13% Similarity=-0.034 Sum_probs=93.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
.++.+.|++++|.+.|+++.+..+. +..+|+.+..++.+.|++++|...|+++.+.. +.+..++..+...+...|+++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 4566778888888888887765433 56678888888888888888888888877652 356777888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+|...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+.
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888887542 335667788888888888888888888877653
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.28 E-value=6e-10 Score=78.80 Aligned_cols=122 Identities=13% Similarity=0.057 Sum_probs=95.5
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
+.+.|++++|...|++.....+. +..+++.+..++.+.|++++|...|+++.+.+. .+..+|..+...+.+.|++++|
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 44556666666666655554322 577888889999999999999999999887532 3567888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.
T Consensus 291 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 291 EDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999988653 457788889999999999999999999988754
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.26 E-value=7.6e-10 Score=73.67 Aligned_cols=123 Identities=13% Similarity=-0.039 Sum_probs=70.3
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 82 (144)
++.+.|++++|.+.|++..+.... +...+..+...+...|++++|..++++..+.+..| +...+..+...+...|+++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 158 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence 445566666666666665554322 45556666666666666666666666665532333 3445555556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+|...+++..+.. +.+...+..+...+.+.|++++|...+++...
T Consensus 159 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 159 QAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666655432 22345555566666666666666666666543
No 11
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.25 E-value=1.6e-09 Score=70.49 Aligned_cols=121 Identities=8% Similarity=-0.098 Sum_probs=57.5
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh-CcHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE-KMYML 83 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~ 83 (144)
+.+.|++++|.+.|++..+.... +...|..+...+...|++++|...+++..+.. +.+..++..+...+... |++++
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHH
Confidence 44455555555555555443222 34445555555555555555555555544331 12344455555555555 55555
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 84 AYRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
|...+++..+.+..|+ ...+..+..++.+.|++++|.+.+++..
T Consensus 96 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555544211222 3344444455555555555555555443
No 12
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=1.1e-09 Score=69.15 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=58.8
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
+.+.|++++|.+.+++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHH
Confidence 3445555555555555444322 244445555555555555555555555544431 13444455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
...+++..+.. +.+...+..+...+.+.|++++|.+.+++..
T Consensus 130 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 130 IDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555554332 2234445555555555555555555555443
No 13
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.22 E-value=1.9e-09 Score=70.13 Aligned_cols=125 Identities=10% Similarity=-0.106 Sum_probs=94.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHhCc
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRT-GDMESVIHVMRKLDELAISPD-YNTFHILIKYFRKEKM 80 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 80 (144)
.++.+.|++++|.+.+++..+.... +..++..+...+... |++++|...+++..+.+..|+ ...+..+..++...|+
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 3566788888888888888765433 677788888888888 888888888888877333333 5677788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+++|...+++..+.. +.+...+..+..++.+.|++++|.+++++....
T Consensus 129 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888887643 234667778888888888888888888886653
No 14
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=1.4e-09 Score=68.54 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=107.8
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.+.+++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 93 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYD 93 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHH
Confidence 356788999999999999876543 378889999999999999999999999988753 356788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
+|...+++..+.. +.+...+..+..++.+.|++++|.+.+++.....
T Consensus 94 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 94 LAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 9999999998653 4567788889999999999999999999977644
No 15
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.21 E-value=2.9e-09 Score=70.79 Aligned_cols=126 Identities=10% Similarity=-0.067 Sum_probs=108.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
..+.+.|++++|.+.|++..+.+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 46778999999999999998733334 66788999999999999999999999988753 24678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
++|...+++..+.. +.+...+..+...+.+.|+.++|.+.++++.+..
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999998653 3567788889999999999999999999987643
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.21 E-value=2e-09 Score=71.01 Aligned_cols=121 Identities=12% Similarity=-0.030 Sum_probs=60.1
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
++.+.|++++|.+.|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 344455555555555555443222 44555555555555555555555555554432 1234445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..
T Consensus 144 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 144 ALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555554321 1234444445555555555555555555544
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.20 E-value=1.4e-09 Score=77.98 Aligned_cols=122 Identities=12% Similarity=0.011 Sum_probs=74.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.++|+++.+..+ .+..+|..+..++...|++++|...|+++.+.+. .+..++..+..+|...|+++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHH
Confidence 345667777777777777665432 3566777777777777777777777777665432 34566666777777777777
Q ss_pred HHHHHHHHHHHCCCCCCH----HHHHHHH------------HHHhccCChHHHHHHHHHhhh
Q 045403 83 LAYRTMVDMHKKGHQPEE----ELCSSLI------------FHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~----~~~~~l~------------~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+|...|+++.+. .|+. ..+..+. ..+.+.|++++|..+++++..
T Consensus 112 ~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 112 EAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp HHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777766643 2332 3333332 225556666666666665544
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.19 E-value=1.1e-09 Score=78.48 Aligned_cols=123 Identities=11% Similarity=-0.074 Sum_probs=86.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHH------
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY----NTFHILI------ 72 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li------ 72 (144)
.++.+.|++++|.+.|+++.+.++. +...+..+..++.+.|++++|...|+++.+. .|+. .++..+.
T Consensus 68 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 68 TVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHH
Confidence 4567778888888888888776443 5777888888888888888888888887764 3433 4444443
Q ss_pred ------HHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 73 ------KYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 73 ------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|.++++++...
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33777777888877777776542 335666777777777777777777777776543
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.19 E-value=1.8e-09 Score=71.10 Aligned_cols=118 Identities=10% Similarity=0.007 Sum_probs=52.6
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh------
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE------ 78 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~------ 78 (144)
+.+.|++++|...|++..+..+. +...|..+-..+.+.|++++|...|++..+... -+...+..+-..+...
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYVALYRQAED 92 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhhh
Confidence 34455555555555555443222 444444555555555555555555554443211 2333444444444444
Q ss_pred -----CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 79 -----KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 79 -----g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
|++++|...+++..+.. +-+...+..+-.++.+.|++++|...+++
T Consensus 93 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44444444444444321 11233344444444444444444444444
No 20
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.19 E-value=3e-09 Score=70.14 Aligned_cols=125 Identities=10% Similarity=0.010 Sum_probs=108.7
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.+.+++..+.... +...+..+...+...|++++|...+++..+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 4677899999999999999876543 778899999999999999999999999887532 46788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
+|...+++..+.. +.+..++..+..+|.+.|++++|.+.+++..+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999998653 3467789999999999999999999999987643
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.18 E-value=6.3e-09 Score=66.24 Aligned_cols=120 Identities=14% Similarity=0.030 Sum_probs=66.2
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
+|.+.|++++|++.|++..+..+. +...|..+..++.+.|++++|...+........ -+...+..+...+...++++.
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 14 KKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDEKQA 91 (184)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCCHHH
Confidence 456678888888888887766444 667777777777788888777777777654422 233334444444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
+...+.+..+.. +.+...+..+-.+|.+.|++++|.+.+++.
T Consensus 92 a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 92 AIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 444444443321 122333334444444444444444444443
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.18 E-value=1.3e-09 Score=75.02 Aligned_cols=96 Identities=9% Similarity=0.007 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH---HHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTF---HILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSS 105 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 105 (144)
+...+..+...+.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~ 205 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNG 205 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHH
Confidence 44444444444555555555555555544431 322111 01111122224455555555555433 1234444555
Q ss_pred HHHHHhccCChHHHHHHHHHhh
Q 045403 106 LIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 106 l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+..++.+.|++++|...+++..
T Consensus 206 la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555544
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.17 E-value=1.4e-09 Score=76.33 Aligned_cols=125 Identities=12% Similarity=0.011 Sum_probs=106.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDK-YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
..+.+.|++++|.+.|+++.+..+. ++..+|..+...+...|++++|...|++..+.. +.+..+|..+..+|...|++
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 4677899999999999999886443 268899999999999999999999999998753 24688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
++|...+++..+.. +.+..++..+..+|.+.|++++|...+++....
T Consensus 264 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 264 EEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999998753 335788999999999999999999999987654
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.13 E-value=1.5e-08 Score=66.71 Aligned_cols=125 Identities=13% Similarity=-0.034 Sum_probs=109.8
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRT-----------GDMESVIHVMRKLDELAISPDYNTFHIL 71 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l 71 (144)
.++.+.|++++|...|++..+..+. +...|..+-.++... |++++|...|++..+... -+...|..+
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~l 124 (217)
T 2pl2_A 47 RTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQR 124 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 3567899999999999999887544 778999999999999 999999999999987522 357789999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
-..+...|++++|...+++..+.. .+...+..+..+|...|++++|...+++..+..+
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999876 7888999999999999999999999999876443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.10 E-value=4.7e-09 Score=73.57 Aligned_cols=64 Identities=14% Similarity=-0.072 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 64 DYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+..++..+...+...|++++|...+++..+.. +.+..+|..+..+|.+.|++++|.+.+++...
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555555555555555555554431 22344555555555555555555555555443
No 26
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.09 E-value=8.9e-09 Score=69.05 Aligned_cols=125 Identities=10% Similarity=-0.133 Sum_probs=92.9
Q ss_pred hhccCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYD---KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
....|++++|.+.|+++.+... +.+..+|..+...+...|++++|...|++..+... .+..+|..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH
Confidence 3456788888888888876532 22467778888888888888888888888776532 3577888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
++|...+++..+.. +.+...+..+..+|.+.|++++|.+.+++.....+
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 142 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88888888887642 23466777788888888888888888888765433
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.09 E-value=1.4e-08 Score=68.21 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=101.3
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHHhCc
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP--DYNTFHILIKYFRKEKM 80 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~ 80 (144)
..+.+.|++++|.+.|++..+..+. +...+..+..++...|++++|...+++..+.+-.| ...+|..+...+...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 3567889999999999998876443 55688888889999999999999999988743222 23458889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+++|...+++..+.. +.+...+..+..+|.+.|++++|.+.+++....
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 999999999998653 235578888999999999999999999987754
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.09 E-value=2.9e-08 Score=69.32 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=51.8
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|...|+++.+..+. +...|..+..++...|++++|...|++..+.. +.+..++..+...+...|++++
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 345566666666666666654332 55566666666666666666666666665542 1345556666666666666666
Q ss_pred HHHHHHHHHH
Q 045403 84 AYRTMVDMHK 93 (144)
Q Consensus 84 a~~~~~~m~~ 93 (144)
|...+++..+
T Consensus 151 A~~~~~~~~~ 160 (368)
T 1fch_A 151 ACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655555543
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.08 E-value=7.2e-09 Score=72.37 Aligned_cols=125 Identities=12% Similarity=-0.024 Sum_probs=107.3
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
..+.+.|++++|.+.|+++.+..+.. +..++..+...+...|++++|...|++..+.. +.+..++..+...+...|++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 34457899999999999998864432 58899999999999999999999999988753 24678999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
++|...+++..+.. +.+...+..+..+|.+.|++++|...+++....
T Consensus 268 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 268 EEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999998753 346778999999999999999999999987654
No 30
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=3.3e-08 Score=65.05 Aligned_cols=124 Identities=7% Similarity=-0.151 Sum_probs=104.7
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|.+.|++..+...+++...+..+..++...|++++|...|++..+... -+..+|..+...+...|++++
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~ 94 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRDMKNNQE 94 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHcccHHH
Confidence 5678899999999999999876657888888899999999999999999999887532 356678999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 84 AYRTMVDMHKKGHQPEE-------ELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
|...+++..+.. +.+. ..|..+-..+.+.|++++|.+.+++..+.
T Consensus 95 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 95 YIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 999999998753 2234 45777888889999999999999998753
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.08 E-value=4e-09 Score=69.95 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=39.0
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCC----HHHHHHHHHHHHHh
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA--ISPD----YNTFHILIKYFRKE 78 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~~li~~~~~~ 78 (144)
+.+.|++++|.+.|++..+.. .+...|..+..++...|++++|...+++..+.. ..|+ ..++..+...+...
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 334455555555555544443 344444444455555555555555544444321 1111 23444444444444
Q ss_pred CcHHHHHHHHHHHH
Q 045403 79 KMYMLAYRTMVDMH 92 (144)
Q Consensus 79 g~~~~a~~~~~~m~ 92 (144)
|++++|...+++..
T Consensus 93 ~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 93 GDLKKTIEYYQKSL 106 (258)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444444
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.07 E-value=1.5e-08 Score=69.77 Aligned_cols=129 Identities=9% Similarity=0.050 Sum_probs=102.3
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLL---NSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE 78 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 78 (144)
...+.+.|++++|.+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHc
Confidence 356788999999999999998864 443222 22334455568999999999999886 446888999999999999
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHhhhcCCCCc
Q 045403 79 KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSE-ALCLQHVKDIAKDRCA 134 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~l~~~m~~~~~~~~ 134 (144)
|++++|...+++..+.. +-+..++..+...+...|+.++ +.++++++.+..+..+
T Consensus 214 g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 99999999999988653 3467789999999999999976 6789988876544443
No 33
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.06 E-value=9.5e-09 Score=70.50 Aligned_cols=121 Identities=12% Similarity=-0.019 Sum_probs=59.7
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--------CCCCHHHHHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA--------ISPDYNTFHILIKYFR 76 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~ 76 (144)
+.+.|++++|.+.+++..+..+. +...+..+...+...|++++|...+++..+.. .+.+..++..+...+.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 44455555555555555443222 44555555555555555555555555544321 0122345555555555
Q ss_pred HhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 77 KEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
..|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.+++..
T Consensus 248 ~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555555555555554432 1233445555555555555555555555544
No 34
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=1.7e-08 Score=77.65 Aligned_cols=124 Identities=12% Similarity=0.048 Sum_probs=104.5
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 81 (144)
.++.+.|++++|++.|++..+..+. +...|+.+-.+|.+.|++++|...|++..+. .| +..+|..+-.++...|++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQDV 93 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 3577889999999999998876444 6788999999999999999999999998774 34 567899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
++|.+.|++..+.. .-+...|..+-.+|.+.|++++|.+.+++..+-.
T Consensus 94 ~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 94 QGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999988653 2357788999999999999999999999876543
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.06 E-value=1.3e-08 Score=69.82 Aligned_cols=123 Identities=14% Similarity=0.001 Sum_probs=70.3
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
++.+.|++++|.+.|++..+.... +...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 211 (330)
T 3hym_B 134 SFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKT 211 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHH
Confidence 445556666666666665554322 34445556666666666666666666655432 2345566666666666666666
Q ss_pred HHHHHHHHHHCC--------CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 84 AYRTMVDMHKKG--------HQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 84 a~~~~~~m~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|...+++..+.. ......++..+..++.+.|++++|.+.+++..+
T Consensus 212 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp HHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666665321 022234566666666666666666666666554
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.06 E-value=1.7e-08 Score=67.69 Aligned_cols=124 Identities=10% Similarity=-0.037 Sum_probs=101.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
.++.+.|++++|.+.|++..+..+. +...|..+...+...|++++|...|++..+... .+..++..+...+...|+++
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~ 128 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDK 128 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHH
Confidence 4677889999999999999886444 788999999999999999999999999987532 35788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
+|...+++..+. .|+..........+...|++++|...+++.....
T Consensus 129 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 129 LAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999999874 3554444445555567799999999997765543
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.06 E-value=9.7e-09 Score=70.37 Aligned_cols=122 Identities=13% Similarity=0.030 Sum_probs=107.2
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
+.+.|++++|.+.+++..+.... +...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 77889999999999999887544 78899999999999999999999999998753 24678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
...+++..+.. +.+...+..+..+|.+.|++++|.+.+++....
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999998653 346778999999999999999999999987654
No 38
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.05 E-value=4.6e-08 Score=62.17 Aligned_cols=123 Identities=9% Similarity=-0.060 Sum_probs=106.5
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
.+|.+.|++++|...++........ +...+..+...+...++++.+...+.+..+.. +-+...+..+-..+.+.|+++
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~ 124 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHD 124 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCch
Confidence 4677899999999999999876554 67788888899999999999999999987653 246788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+|...+++..+.. +.+...|..+-.+|.+.|++++|.+.|++..+
T Consensus 125 ~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 125 KAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999998753 34677899999999999999999999998765
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.05 E-value=8.8e-09 Score=68.28 Aligned_cols=124 Identities=18% Similarity=0.130 Sum_probs=61.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----------------
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKY--D----VVLLNSMLCAYCRTGDMESVIHVMRKLDELA----------------- 60 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p--~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----------------- 60 (144)
++.+.|++++|.+.+++..+..... + ..+|..+...+...|++++|...|++..+..
T Consensus 47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELK 126 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHH
Confidence 3445555555555555554432111 1 3555555555555555555555555554421
Q ss_pred -------CCC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 61 -------ISP-DYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 61 -------~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..| +...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|.+.+++...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 127 KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111 22344445555555555555555555555432 22344555555555555555555555555443
No 40
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.04 E-value=6.8e-09 Score=71.14 Aligned_cols=122 Identities=9% Similarity=0.023 Sum_probs=104.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.+.+++..+..+. +..+|..+...+...|++++|...+++..+.. +.+..++..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 4678899999999999999876433 68899999999999999999999999988753 246788999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 83 LAYRTMVDMHKKGHQP-----------EEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
+|...+++..+..... +...+..+..++.+.|+.++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999998643211 4678889999999999999999998754
No 41
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=5.9e-08 Score=62.95 Aligned_cols=122 Identities=10% Similarity=0.017 Sum_probs=103.7
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|.+.|++. +.|+...|..+...+...|++++|...|++..+.. +.+...|..+..++...|++++
T Consensus 15 ~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 567889999999999877 36788999999999999999999999999988753 3567889999999999999999
Q ss_pred HHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 84 AYRTMVDMHKKGH--------------QP-EEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 84 a~~~~~~m~~~~~--------------~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
|...+++..+..- .| ....+..+..+|.+.|++++|.+.+++.....
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999987431 11 22678888999999999999999999976543
No 42
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.99 E-value=5.3e-08 Score=60.47 Aligned_cols=123 Identities=12% Similarity=0.030 Sum_probs=99.9
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+..+|..+..++...|+++
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~ 98 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 98 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHH
Confidence 3567889999999999998876443 78889999999999999999999999988753 246788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHHHHHHhhh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCS--SLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+|...+++..+.. +.+...+. .....+.+.|++++|.+.++....
T Consensus 99 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 99 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999998653 23444553 344447788999999999987643
No 43
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.98 E-value=5.3e-08 Score=67.31 Aligned_cols=88 Identities=9% Similarity=-0.036 Sum_probs=53.8
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|.+.|++..+..+. +...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHH
Confidence 455566667777776666654332 45666666666666666666666666665532 1244566666666666666666
Q ss_pred HHHHHHHHHH
Q 045403 84 AYRTMVDMHK 93 (144)
Q Consensus 84 a~~~~~~m~~ 93 (144)
|...+++..+
T Consensus 90 A~~~~~~~~~ 99 (359)
T 3ieg_A 90 AEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 44
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.95 E-value=9.5e-08 Score=66.04 Aligned_cols=121 Identities=12% Similarity=-0.077 Sum_probs=63.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----CHHHHHHH--------
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP----DYNTFHIL-------- 71 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l-------- 71 (144)
++.+.|++++|.+.|++..+..+. +...|..+...+...|++++|...|++..+. .| +...+..+
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHH
Confidence 345556666666666666554322 4455666666666666666666666665543 23 22222222
Q ss_pred ----HHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 72 ----IKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 72 ----i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.+++...
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK 182 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555555555555432 22344555555555555555555555555443
No 45
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.95 E-value=7.6e-08 Score=56.63 Aligned_cols=99 Identities=17% Similarity=0.053 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
...|..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5677888888888889999998888887653 2467778888888888899999988888887643 3466778888888
Q ss_pred HhccCChHHHHHHHHHhhhcC
Q 045403 110 LGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 110 ~~~~g~~~~a~~l~~~m~~~~ 130 (144)
+.+.|++++|.+.+++.....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 888889999998888876543
No 46
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.92 E-value=8.1e-08 Score=69.71 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=80.5
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.+.|+++.+.. |+...|..+..++.+.|++++|...+++..+.+ +.+..+|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 35778999999999999999864 789999999999999999999999999998764 246789999999999999999
Q ss_pred HHHHHHHHHHHCC
Q 045403 83 LAYRTMVDMHKKG 95 (144)
Q Consensus 83 ~a~~~~~~m~~~~ 95 (144)
+|...|+++.+.+
T Consensus 91 ~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 91 DAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987654
No 47
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.91 E-value=2.2e-08 Score=72.75 Aligned_cols=123 Identities=8% Similarity=-0.135 Sum_probs=88.9
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
.++.+.|++++|.+.|++..+.... ...|..+...+...|++++|...+++..+... .+..++..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHH
Confidence 3466778888888888887765433 77777778888888888888888887766432 35567777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+|...+++..+.. +.+...+..+...+.+.|++++|.+++++....
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888777643 224556777777777788888888877776654
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.91 E-value=8.3e-08 Score=73.82 Aligned_cols=123 Identities=9% Similarity=-0.071 Sum_probs=106.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
.+|.+.|++++|++.|++..+.... +...|+.+-.++.+.|++++|.+.|++..+..- -+..+|+.+-..|...|+++
T Consensus 51 ~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 51 SVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 4677899999999999999886544 688999999999999999999999999887421 35778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+|...|++..+.. +-+...+..+..++.+.|++++|.+.+++..+
T Consensus 129 eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 129 EAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999998753 23577899999999999999999998887543
No 49
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=2.8e-08 Score=61.81 Aligned_cols=122 Identities=7% Similarity=-0.088 Sum_probs=97.5
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|++.++........ +...+-.+-..|.+.|++++|...|++..+..- -+..+|..+-.+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHH
Confidence 455678999999999988654222 345566788899999999999999999987532 477899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH-HHHhhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCL-QHVKDI 128 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l-~~~m~~ 128 (144)
|...|++..+.. +-+...+..+...|.+.|+.++|.+. +++..+
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999998753 23577888999999999999876665 566554
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.90 E-value=6.1e-08 Score=69.34 Aligned_cols=125 Identities=9% Similarity=-0.004 Sum_probs=105.8
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
++.+.|++++|++.+++..+..+. +...|+.+-.++...|+ +++|...|++..+..- -+...|..+-.++...|+++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHH
Confidence 466789999999999999887554 78889999999999996 9999999999987532 36778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
+|...+++..+.. .-+...|..+-.++.+.|++++|...+++......
T Consensus 184 eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P 231 (382)
T 2h6f_A 184 QELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231 (382)
T ss_dssp THHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9999999998753 34677888899999999999999999999876443
No 51
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=2.2e-07 Score=69.17 Aligned_cols=126 Identities=9% Similarity=-0.097 Sum_probs=102.8
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.+.|++..+.... +...|..+..++...|++++|...|++..+.. +.+...+..+..++...|+++
T Consensus 31 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 108 (568)
T 2vsy_A 31 DAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAE 108 (568)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3566789999999999998876443 67888999999999999999999999987753 245778888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CChHHHHHHHHHhhhcCC
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKM---RAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~l~~~m~~~~~ 131 (144)
+|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+...
T Consensus 109 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 109 AAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9999999988653 23567788888888888 999999999998765443
No 52
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.89 E-value=8.9e-08 Score=70.02 Aligned_cols=122 Identities=9% Similarity=-0.060 Sum_probs=74.1
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
++.+.|++++|.+.|++..+..+. +..+|..+...+...|++++|...|++..+... .+..++..+...+...|++++
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 445566666666666666554332 456666666666666666666666666655321 234556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|...+++..+.. +.+...+..+...+.+.|++++|.+.+++...
T Consensus 363 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 363 SEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666666542 22344566666666666777777666666443
No 53
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.89 E-value=4.3e-08 Score=62.07 Aligned_cols=124 Identities=10% Similarity=-0.070 Sum_probs=99.5
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHHhCcH-
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKY-FRKEKMY- 81 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~- 81 (144)
.+...|++++|...++...+..+ .+...|..+...+...|++++|...|++..+..- .+...+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcc
Confidence 35678899999999999887644 3778999999999999999999999999886532 366778888888 7789998
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 82 -MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 82 -~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
++|...+++..+.. +.+...+..+..+|.+.|++++|...+++.....
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998753 3356788889999999999999999999977643
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=5.1e-07 Score=60.85 Aligned_cols=115 Identities=14% Similarity=0.006 Sum_probs=63.9
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH---
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK--- 77 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--- 77 (144)
+.+.|++++|.+.|++..+ +-+...+..+-..+.. .+++++|...|++..+.+ +...+..+-..|..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCC
Confidence 3445566666666665554 2233455555555555 566666666666655543 44555555555555
Q ss_pred -hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhh
Q 045403 78 -EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK----MRAHSEALCLQHVKDI 128 (144)
Q Consensus 78 -~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~l~~~m~~ 128 (144)
.++.++|...+++..+.+ +...+..+-..|.+ .|++++|.+.+++..+
T Consensus 90 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 90 VSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 566666666666555543 44455555555555 5566666666655443
No 55
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=2e-07 Score=56.31 Aligned_cols=96 Identities=10% Similarity=-0.080 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL 110 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 110 (144)
..+......|.+.|++++|...|++..+.. +.+..+|..+-.+|.+.|++++|...+++..+.. +.+...|..+-.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456667777777788888888887776542 2456677777777777888888877777777543 23466777777777
Q ss_pred hccCChHHHHHHHHHhhh
Q 045403 111 GKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 111 ~~~g~~~~a~~l~~~m~~ 128 (144)
...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 778888888887777654
No 56
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=2.2e-07 Score=55.19 Aligned_cols=98 Identities=17% Similarity=0.035 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL 110 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 110 (144)
..|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..++++..+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 3577888999999999999999999987543 467888999999999999999999999998754 34677888899999
Q ss_pred hccCChHHHHHHHHHhhhcC
Q 045403 111 GKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 111 ~~~g~~~~a~~l~~~m~~~~ 130 (144)
.+.|++++|.++++++....
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD 99 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999987643
No 57
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.87 E-value=2.2e-07 Score=55.03 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3444455555555555555555555554431 1244455555555555555555555555554431 1234445555555
Q ss_pred HhccCChHHHHHHHHHhhh
Q 045403 110 LGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 110 ~~~~g~~~~a~~l~~~m~~ 128 (144)
+.+.|++++|.+.+++...
T Consensus 90 ~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 5555555555555555443
No 58
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.87 E-value=3.2e-07 Score=53.87 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=86.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.+.|+++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 94 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYD 94 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHH
Confidence 457789999999999999987643 377889999999999999999999999998753 257788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLG 111 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 111 (144)
+|...+++..+.. +.+...+..+-..+.
T Consensus 95 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 95 EAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 9999999998653 234445555544443
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.86 E-value=3e-07 Score=63.42 Aligned_cols=123 Identities=14% Similarity=-0.026 Sum_probs=86.2
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH-HhCcH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVV-LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFR-KEKMY 81 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~ 81 (144)
.+.+.|++++|.++|+...+..+. +.. .|..+...+.+.|++++|..+|++..+..- ++...|........ ..|+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred HHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence 455678888888888888874222 233 788888888888888888888888876532 33344443322221 25888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 82 MLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++....
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888877542 235677888888888888888888888887653
No 60
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.86 E-value=1.1e-07 Score=69.50 Aligned_cols=125 Identities=9% Similarity=-0.063 Sum_probs=107.8
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+...|++++|.+.|+...+. .|+...|..+...+...|++++|...+++..+... .+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHH
Confidence 466789999999999999885 45588899999999999999999999999987542 467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCC
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDR 132 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~ 132 (144)
|...+++..+.. +.+...+..+..++.+.|++++|.+++++.....+.
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999998753 234678888999999999999999999998765433
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.86 E-value=6.4e-08 Score=70.89 Aligned_cols=123 Identities=14% Similarity=0.007 Sum_probs=104.6
Q ss_pred hhhhccCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh---
Q 045403 3 SAFCRGGCF-EEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE--- 78 (144)
Q Consensus 3 ~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--- 78 (144)
.++...|++ ++|.+.|++..+..+. +...|..+..+|...|++++|...|++..+. .|+...+..+-..+...
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~ 186 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTD 186 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCS
T ss_pred HHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccC
Confidence 356778999 9999999998876444 6889999999999999999999999998875 47788889999999998
Q ss_pred ------CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------CChHHHHHHHHHhhhc
Q 045403 79 ------KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKM--------RAHSEALCLQHVKDIA 129 (144)
Q Consensus 79 ------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~l~~~m~~~ 129 (144)
|++++|...+++..+.. +-+...|..+..+|... |++++|.+.+++....
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 99999999999998753 33577888888888888 9999999999987764
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.86 E-value=6.5e-08 Score=65.74 Aligned_cols=127 Identities=12% Similarity=0.048 Sum_probs=103.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCC-CCHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAK-------YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL------AIS-PDYNTF 68 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~-p~~~~~ 68 (144)
..+...|++++|..+|++..+. ..+....++..+...+...|++++|...+++..+. +-. ....++
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4677899999999999998873 23445678899999999999999999999998754 222 345678
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHKK------GHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..+...+...|++++|...+++..+. +-.| ....+..+...+.+.|++++|.+++++....
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999998753 2223 3456788899999999999999999987654
No 63
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.86 E-value=3e-09 Score=77.12 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=11.4
Q ss_pred HHHHHHhccCChHHHHHHHHHh
Q 045403 105 SLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 105 ~l~~~~~~~g~~~~a~~l~~~m 126 (144)
.++..|.+.|.+++|.++++.-
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555555543
No 64
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=3.4e-08 Score=66.11 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=100.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCC-CHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKY-------DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL------AISP-DYNTF 68 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~-------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~ 68 (144)
.+|...|++++|.+.|++..+.. .+....++..+...+...|++++|...+++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 46778999999999999987651 1335678899999999999999999999998764 1123 35678
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHC------------------------------------------------CCCCCH
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHKK------------------------------------------------GHQPEE 100 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~~------------------------------------------------~~~~~~ 100 (144)
..+...+...|++++|..++++..+. ......
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 89999999999999999999988752 111123
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 101 ELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 101 ~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.++..+..+|.+.|++++|..++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677889999999999999999998653
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.84 E-value=9.1e-07 Score=59.60 Aligned_cols=111 Identities=9% Similarity=-0.019 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----hC
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK----EK 79 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 79 (144)
.|++++|.+.|++..+.+ +...+..+-..|.. .+++++|...|++..+.+ +..++..+-..|.. .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 555555555555555443 44555555555555 555555555555555442 44555555555555 55
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhh
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK----MRAHSEALCLQHVKD 127 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~l~~~m~ 127 (144)
+.++|..++++..+.+ +...+..+-..|.+ .++.++|...+++..
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 177 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKAC 177 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 5555555555555443 33344444444444 555555555555543
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.83 E-value=1.2e-07 Score=69.52 Aligned_cols=126 Identities=11% Similarity=0.021 Sum_probs=108.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRT---------GDMESVIHVMRKLDELAISPDYNTFHILIK 73 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 73 (144)
.+|.+.|++++|.+.|++..+. .|+...+..+-..+... |++++|...|++..+... -+...|..+..
T Consensus 145 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 221 (474)
T 4abn_A 145 EVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGN 221 (474)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4677889999999999999886 46679999999999999 999999999999887532 46788999999
Q ss_pred HHHHh--------CcHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 74 YFRKE--------KMYMLAYRTMVDMHKKGHQ--PEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 74 ~~~~~--------g~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
+|... |++++|...+++..+..-. -+...|..+-.+|.+.|++++|.+.+++..+..+
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999 9999999999999875310 3788899999999999999999999999776443
No 67
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=7.2e-08 Score=59.86 Aligned_cols=110 Identities=15% Similarity=-0.041 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC
Q 045403 17 LARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 17 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 96 (144)
.|++..... +.+...+..+...+.+.|++++|...|++..+... .+...|..+-.++...|++++|...+++..+..
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344444332 22556777788888899999999999998876432 477788888888999999999999999988653
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 97 QPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+.+...+..+-.+|...|++++|.+.+++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 235567777888889999999999999886654
No 68
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.83 E-value=2.9e-07 Score=53.16 Aligned_cols=101 Identities=10% Similarity=-0.020 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP--EEELCSSL 106 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~l 106 (144)
+...|..+...+...|++++|...|++..+... .+...+..+...+...|++++|...+++..+.. .. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 456677888888999999999999999876532 467788889999999999999999999998753 23 57788889
Q ss_pred HHHHhcc-CChHHHHHHHHHhhhcCC
Q 045403 107 IFHLGKM-RAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 107 ~~~~~~~-g~~~~a~~l~~~m~~~~~ 131 (144)
..++.+. |++++|.+.+++.....+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999 999999999999876443
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.82 E-value=6e-08 Score=65.92 Aligned_cols=126 Identities=15% Similarity=0.085 Sum_probs=100.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCC-CHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAK------YD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL------AISP-DYNTF 68 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~ 68 (144)
..|...|++++|.+.|++..+. +. +.....+..+...+...|++++|...+++..+. +-.| ...++
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4677899999999999998764 22 334577889999999999999999999998764 2223 34578
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHC------------------------------------------------CCCCCH
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHKK------------------------------------------------GHQPEE 100 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~~------------------------------------------------~~~~~~ 100 (144)
..+...+...|++++|...+++..+. ......
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 278 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHH
Confidence 88999999999999999999998752 112234
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 101 ELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 101 ~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.++..+..+|.+.|++++|.+.+++..+
T Consensus 279 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 279 TTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5788899999999999999999998654
No 70
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=2.7e-07 Score=64.68 Aligned_cols=122 Identities=10% Similarity=0.014 Sum_probs=102.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYD--------------VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTF 68 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 68 (144)
..+.+.|++++|...|++..+...... ...|..+-.++.+.|++++|...|++..+.. +.+...|
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 233 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL 233 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 357788999999999999988644422 5899999999999999999999999998753 2478899
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH-HHHHHHh
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA-LCLQHVK 126 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~l~~~m 126 (144)
..+-.+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++ ..+++.|
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998753 33567888899999999999988 4455554
No 71
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.80 E-value=3.1e-08 Score=66.29 Aligned_cols=126 Identities=13% Similarity=0.033 Sum_probs=101.8
Q ss_pred hhhhccCCHHHHHHHHHHHHhc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAK------YD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL------AI-SPDYNTF 68 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~~~ 68 (144)
.+|...|++++|...+++..+. +- +....++..+...+...|++++|...+.+..+. .- +....++
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 130 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQL 130 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4577889999999999998764 22 334678999999999999999999999998754 11 2245678
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHKK------GHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..+...+...|++++|...+++..+. +-.| ...++..+..+|.+.|++++|.+++++...
T Consensus 131 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998754 1123 345788899999999999999999998765
No 72
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.80 E-value=4.8e-07 Score=60.56 Aligned_cols=127 Identities=9% Similarity=-0.001 Sum_probs=99.8
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
.++.+.|++++|.+.+++..+.+..|+ ...|..+...+...|++++|...|++..+... .+..++..+...|...|+
T Consensus 45 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 45 VCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccC
Confidence 467789999999999999988432222 34588999999999999999999999887532 355789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCChHHHHHHHHHhhhcCCC
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLI-FHLGKMRAHSEALCLQHVKDIAKDR 132 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~l~~~m~~~~~~ 132 (144)
+++|...+++..+.. +.+...+..+. ..|. .+++++|.+.+++..+..+.
T Consensus 124 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 124 FPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcc
Confidence 999999999988652 33566676676 5544 45999999999988764433
No 73
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=2.9e-07 Score=54.85 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045403 26 DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSS 105 (144)
Q Consensus 26 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 105 (144)
.+.+...|..+...+...|++++|...|++..+..- .+...+..+..++...|++++|...+++..+.. ..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 345667777788888888888888888888765422 366777778888888888888888888877642 235667777
Q ss_pred HHHHHhccCChHHHHHHHHHhhhc
Q 045403 106 LIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 106 l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+..++.+.|++++|.+.+++....
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777888888888888888876543
No 74
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=3.7e-07 Score=57.03 Aligned_cols=99 Identities=10% Similarity=-0.044 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIF 108 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 108 (144)
+...+..+-..+.+.|++++|...|++..+... -+...|..+-.+|...|++++|...|++..+.. +-+...|..+-.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 455677777888888888888888888876422 467788888888888888888888888888653 224567777888
Q ss_pred HHhccCChHHHHHHHHHhhhc
Q 045403 109 HLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+|.+.|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888886653
No 75
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.78 E-value=3.6e-07 Score=63.51 Aligned_cols=122 Identities=9% Similarity=-0.010 Sum_probs=97.3
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-----CHHHHHHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-----DYNTFHILIKYFR 76 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~ 76 (144)
.++...|++++|.+++++-...+. .-+...+-.++..+.+.|+.+.|.+++++|.+. .| +..+...+..++.
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v 185 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYI 185 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHH
Confidence 467788999999999999876654 237788999999999999999999999999874 46 3677777777733
Q ss_pred --HhC--cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 77 --KEK--MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 77 --~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345 899999999999754 35544555566689999999999999997664
No 76
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=3.2e-07 Score=68.34 Aligned_cols=121 Identities=10% Similarity=-0.122 Sum_probs=88.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRT 87 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 87 (144)
.|++++|.+.|++..+.... +...|..+...+...|++++|...|++..+..- -+..++..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47899999999998875433 678999999999999999999999999887532 4678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 88 MVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 88 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+...
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 122 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99998753 34577899999999999999999999999776433
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=3.9e-07 Score=62.43 Aligned_cols=124 Identities=10% Similarity=0.027 Sum_probs=95.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH-HHHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIK-YFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~ 82 (144)
.+.+.|++++|.+.|++..+..+. +...+..+...+.+.|++++|...+++.... .|+......... .+...++.+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence 466789999999999999887554 7788999999999999999999999988664 355443333322 355667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
.|...+++..+.. +.+...+..+...+.+.|++++|...+++.....+
T Consensus 203 ~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 203 PEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 7788888777643 34567788888888899999999999988776443
No 78
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=1.7e-06 Score=52.10 Aligned_cols=100 Identities=10% Similarity=0.097 Sum_probs=84.1
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.|.+.|++++|++.|++..+..+. +...|..+-.++.+.|++++|...|++..+..- .+...|..+-.++...|++++
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~ 99 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAMREWSK 99 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHCCCHHH
Confidence 578899999999999999876544 789999999999999999999999999887532 467889999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHH
Q 045403 84 AYRTMVDMHKKGHQP-EEELCSSLI 107 (144)
Q Consensus 84 a~~~~~~m~~~~~~~-~~~~~~~l~ 107 (144)
|...|++..+. .| +...+..+-
T Consensus 100 A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 100 AQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHH--CcCCHHHHHHHH
Confidence 99999999875 35 344444443
No 79
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.74 E-value=1.4e-06 Score=58.43 Aligned_cols=125 Identities=10% Similarity=-0.049 Sum_probs=99.3
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC-HHHHHHHHHHHHH-
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-SPD-YNTFHILIKYFRK- 77 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~li~~~~~- 77 (144)
.+.+.|++++|.+.|++..+..+. + ...+..+..++.+.|++++|...|++..+... .|+ ...+..+..++..
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 467889999999999999886443 3 67888899999999999999999999987532 122 4567777888888
Q ss_pred -------hCcHHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 78 -------EKMYMLAYRTMVDMHKKGHQPE-EELC-----------------SSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 78 -------~g~~~~a~~~~~~m~~~~~~~~-~~~~-----------------~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
.|++++|...|++..+.. |+ .... -.+...|.+.|++++|...+++.....+
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999999999998643 32 2233 4457788999999999999999876433
No 80
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=6.5e-07 Score=55.51 Aligned_cols=109 Identities=10% Similarity=0.022 Sum_probs=88.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 81 (144)
..|.+.|++++|.+.|++..+..+. +...|..+..++.+.|++++|...|++..+. .| +..+|..+...|.+.|+.
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCh
Confidence 4678899999999999999887555 8899999999999999999999999998874 34 577899999999999998
Q ss_pred HHHHHH-HHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 045403 82 MLAYRT-MVDMHKKGHQPEEELCSSLIFHLGKMRA 115 (144)
Q Consensus 82 ~~a~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 115 (144)
+++... +++..+.. +-+..+|......+.+.|+
T Consensus 116 ~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 116 DGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 876654 57766542 2356677777777766664
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.71 E-value=1.1e-06 Score=57.55 Aligned_cols=124 Identities=10% Similarity=-0.123 Sum_probs=101.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-------HHHHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY-------NTFHILIKYF 75 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~ 75 (144)
.++.+.|++++|.+.|++..+..+. +...|..+...+...|++++|...+++..+... .+. ..|..+-..+
T Consensus 50 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~ 127 (228)
T 4i17_A 50 VCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKF 127 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHH
Confidence 3577889999999999999886544 778899999999999999999999999887422 234 4577888888
Q ss_pred HHhCcHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCh---------------------------HHHHHHHHH
Q 045403 76 RKEKMYMLAYRTMVDMHKKGHQPE---EELCSSLIFHLGKMRAH---------------------------SEALCLQHV 125 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~---------------------------~~a~~l~~~ 125 (144)
...|++++|...+++..+. .|+ ...+..+-.+|...|+. ++|...+++
T Consensus 128 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 205 (228)
T 4i17_A 128 QQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGE 205 (228)
T ss_dssp HHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864 454 45777788888887777 888888888
Q ss_pred hhhcC
Q 045403 126 KDIAK 130 (144)
Q Consensus 126 m~~~~ 130 (144)
..+..
T Consensus 206 a~~l~ 210 (228)
T 4i17_A 206 AVTLS 210 (228)
T ss_dssp HHHHC
T ss_pred HhhcC
Confidence 76543
No 82
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=3e-06 Score=49.09 Aligned_cols=97 Identities=12% Similarity=-0.022 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4456666667777777777777777766542 1356667777777777777777777777776542 2345666667777
Q ss_pred HhccCChHHHHHHHHHhhh
Q 045403 110 LGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 110 ~~~~g~~~~a~~l~~~m~~ 128 (144)
+.+.|++++|.+.+++...
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777654
No 83
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.70 E-value=3.9e-07 Score=66.15 Aligned_cols=103 Identities=9% Similarity=0.004 Sum_probs=65.1
Q ss_pred ChhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 1 MISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 1 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
|+.+|++.|+++++.++++ .|+..+|+.+...|...|.+++|...|+.+ ..|..+..++.+.|+
T Consensus 100 Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 100 LIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 163 (449)
T ss_dssp ---------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc
Confidence 4568889999999888875 367779999999999999999999999976 378899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
+++|.+.+.+. .++.+|..++.+|...|+++.|......
T Consensus 164 yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 164 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp HHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999988888 2788999999999999998888655443
No 84
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=6.1e-07 Score=56.03 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=81.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|.+.|++.....+. +...|..+-.++...|++++|...|++..+... -+...|..+-.+|...|++++
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~~lg~~~e 122 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQLRLKAPLK 122 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHH
Confidence 567899999999999999987554 789999999999999999999999999987532 356789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 045403 84 AYRTMVDMHKKGHQPEEE 101 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~ 101 (144)
|...|++..+. .|+..
T Consensus 123 A~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 123 AKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHHHh--CCCHH
Confidence 99999999875 46654
No 85
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=1.1e-06 Score=52.26 Aligned_cols=109 Identities=10% Similarity=0.029 Sum_probs=87.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.+.|++..+.... +...+..+...+...|++++|...+++..+..- .+...+..+..++...|+++
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~ 101 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALEAMKDYT 101 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHhhHH
Confidence 3567899999999999999876433 788999999999999999999999999887532 46788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR 114 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 114 (144)
+|...+++..+.. +-+...+..+..++.+.|
T Consensus 102 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 102 KAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 9999999998643 123345555655555443
No 86
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.70 E-value=1.2e-06 Score=64.72 Aligned_cols=123 Identities=12% Similarity=-0.023 Sum_probs=94.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH-HHHHHhC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILI-KYFRKEK 79 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g 79 (144)
..+.+.|++++|.++|+...+. .|+ ...|...+..+.+.|++++|..+|++..+..- .+...|.... -.+...|
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcC
Confidence 3456789999999999999875 443 35899999999999999999999999887521 1222222221 2234689
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....
T Consensus 406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 9999999999888642 235788999999999999999999999998764
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.69 E-value=1.6e-06 Score=56.51 Aligned_cols=104 Identities=12% Similarity=-0.059 Sum_probs=77.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNS----------------MLCAYCRTGDMESVIHVMRKLDELAISPDYNT 67 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 67 (144)
.+.+.|++++|...|++..+..+. +...|.. +..++.+.|++++|...|++..+... -+...
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHH
Confidence 456789999999999988775333 4455666 88888899999999999988876532 36778
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL 110 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 110 (144)
+..+-..+...|++++|...|++..+.. +-+...+..+-.+|
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 8888888999999999999999887643 22344555554444
No 88
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=3.9e-06 Score=48.61 Aligned_cols=91 Identities=16% Similarity=0.041 Sum_probs=78.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.+.|+......+. +...+..+...+...|++++|...+++..+... .+...+..+..++...|+++
T Consensus 12 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~ 89 (118)
T 1elw_A 12 NKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFE 89 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHH
Confidence 3567889999999999999876443 788899999999999999999999999887532 46788999999999999999
Q ss_pred HHHHHHHHHHHCC
Q 045403 83 LAYRTMVDMHKKG 95 (144)
Q Consensus 83 ~a~~~~~~m~~~~ 95 (144)
+|...+++..+.+
T Consensus 90 ~A~~~~~~~~~~~ 102 (118)
T 1elw_A 90 EAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998653
No 89
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.67 E-value=6.5e-06 Score=56.66 Aligned_cols=120 Identities=10% Similarity=0.021 Sum_probs=94.7
Q ss_pred ccCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HH-HHHHHHHHHHH
Q 045403 7 RGGCF-------EEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD-YN-TFHILIKYFRK 77 (144)
Q Consensus 7 ~~g~~-------~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~ 77 (144)
+.|++ ++|..+|++..+.-.+-+...|..+...+.+.|++++|..+|++..+. .|+ .. .|..+...+.+
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHH
Confidence 45775 999999999987322336779999999999999999999999999874 454 33 89999999999
Q ss_pred hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCChHHHHHHHHHhhhc
Q 045403 78 EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL-GKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~l~~~m~~~ 129 (144)
.|++++|..+|++..+.+ +.+...|....... ...|+.++|.++|++....
T Consensus 147 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp HHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999998754 23445554443332 2379999999999987654
No 90
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.67 E-value=2.7e-07 Score=67.77 Aligned_cols=119 Identities=12% Similarity=0.022 Sum_probs=93.7
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|.+.|++..+.... +...|..+..++.+.|++++|...+++..+..- -+..+|..+-.+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 3567889999999999999886444 689999999999999999999999999987532 46788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCChHHHHHHHH
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFH--LGKMRAHSEALCLQH 124 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~l~~ 124 (144)
+|.+.+++..+..- -+...+..+..+ +.+.|++++|.++++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999986531 123344444444 888899999999988
No 91
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=4.4e-07 Score=57.55 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=85.4
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHHhCcHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKY-FRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~ 82 (144)
.+.+.|++++|...|++..+..+. +...+..+...+...|++++|...+++..+. .|+...+...... +...+...
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcccc
Confidence 567789999999999987765433 7788999999999999999999999887654 2344333222111 11222223
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
++...+++..+.. +-+...+..+..++.+.|++++|...+++.....
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 4566777776532 2246777788888888888888888888876543
No 92
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.65 E-value=2.1e-06 Score=50.69 Aligned_cols=111 Identities=12% Similarity=0.027 Sum_probs=92.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+...|++++|.+.|++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 97 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHV 97 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHH
Confidence 456788999999999999887643 378889999999999999999999999988753 245788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAH 116 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 116 (144)
+|...+++..+.. +.+...+..+..++.+.|++
T Consensus 98 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 98 EAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999998753 23566777777777777664
No 93
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=3.5e-06 Score=50.62 Aligned_cols=100 Identities=7% Similarity=-0.205 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 27 KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
+.+...|..+...+...|++++|...|++..+... .+...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 34567777778888888888888888887766432 356777778888888888888888888877643 2356677777
Q ss_pred HHHHhccCChHHHHHHHHHhhh
Q 045403 107 IFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 107 ~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..++...|++++|...+++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7888888888888888877554
No 94
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.9e-06 Score=51.30 Aligned_cols=93 Identities=10% Similarity=-0.069 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLG 111 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 111 (144)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...|..+-.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444455555555555555544321 1234445555555555555555555555554332 123344444555555
Q ss_pred ccCChHHHHHHHHHh
Q 045403 112 KMRAHSEALCLQHVK 126 (144)
Q Consensus 112 ~~g~~~~a~~l~~~m 126 (144)
..|++++|.+.+++.
T Consensus 84 ~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 84 AVKEYASALETLDAA 98 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 555555555555543
No 95
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=1.8e-06 Score=49.68 Aligned_cols=91 Identities=8% Similarity=-0.080 Sum_probs=78.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHHh-C
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISP--DYNTFHILIKYFRKE-K 79 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~-g 79 (144)
..+.+.|++++|...|++..+.... +...|..+...+...|++++|...+++..+..- . +...+..+..++... |
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~~~~~ 91 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADALRYIEG 91 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHTTCSS
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHhC
Confidence 3567889999999999998876443 678899999999999999999999999987532 3 588899999999999 9
Q ss_pred cHHHHHHHHHHHHHCC
Q 045403 80 MYMLAYRTMVDMHKKG 95 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~ 95 (144)
++++|.+.+.+..+..
T Consensus 92 ~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 92 KEVEAEIAEARAKLEH 107 (112)
T ss_dssp CSHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999998654
No 96
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=2.8e-06 Score=50.56 Aligned_cols=89 Identities=12% Similarity=-0.002 Sum_probs=78.4
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|...|++..+..+. +...|..+..++.+.|++++|...+++..+... -+...|..+-.++...|++++
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~ 90 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYAS 90 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhCHHH
Confidence 567899999999999999876544 789999999999999999999999999987532 467889999999999999999
Q ss_pred HHHHHHHHHHC
Q 045403 84 AYRTMVDMHKK 94 (144)
Q Consensus 84 a~~~~~~m~~~ 94 (144)
|...+++..+.
T Consensus 91 A~~~~~~al~~ 101 (126)
T 3upv_A 91 ALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 97
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.61 E-value=2.1e-06 Score=55.25 Aligned_cols=121 Identities=9% Similarity=-0.006 Sum_probs=92.4
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYD---------------VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTF 68 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 68 (144)
.+.+.|++++|.+.|++......... ...|..+..++...|++++|...+++..+.. +.+...+
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 125 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKAL 125 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHH
Confidence 56788999999999999887533311 2788999999999999999999999988753 2567889
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHh
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL-CLQHVK 126 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~l~~~m 126 (144)
..+..++...|++++|...|++..+.. +-+...+..+..++...++..++. ..+..+
T Consensus 126 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 126 YKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998653 235667778888887777777666 444443
No 98
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=1.7e-06 Score=52.90 Aligned_cols=99 Identities=11% Similarity=-0.077 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIF 108 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 108 (144)
+...+..+-..+.+.|++++|...|++..+... .+...|..+-.++...|++++|...+++..+.. +.+...+..+-.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 445556666777788888888888888776422 466777778888888888888888888887653 234556667777
Q ss_pred HHhccCChHHHHHHHHHhhhc
Q 045403 109 HLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+|...|++++|.+.+++....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888876543
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.60 E-value=1.3e-06 Score=59.79 Aligned_cols=125 Identities=10% Similarity=-0.035 Sum_probs=69.2
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCC---C--CHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCC-CC----HHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDK---Y--DVVLLNSMLCAYCRT-GDMESVIHVMRKLDELAIS-PD----YNTFHILI 72 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~---p--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li 72 (144)
+|.+.|++++|+..|++..+.... + -..+++.+-..|... |++++|...|++..+.... .+ ..++..+.
T Consensus 86 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 86 CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 345556666666666665432111 0 134566666666664 7777777666665542100 01 23456666
Q ss_pred HHHHHhCcHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKKGHQPEE------ELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..+...|++++|...+++..+....... ..|..+..++...|++++|...+++...
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666777777777777766654322111 1345555666666777777777666543
No 100
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.60 E-value=1.1e-06 Score=62.82 Aligned_cols=124 Identities=6% Similarity=-0.015 Sum_probs=103.9
Q ss_pred hhhccCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 4 AFCRGGC-FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 4 ~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
++.+.|+ +++|+..|++..+..+. +...|+.+-.++...|++++|...|++..+..- -+...|..+-.++...|+++
T Consensus 140 ~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 140 LLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChH
Confidence 4667786 99999999999987655 889999999999999999999999999987532 47789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChHHH-----HHHHHHhhhcC
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGK-MRAHSEA-----LCLQHVKDIAK 130 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~l~~~m~~~~ 130 (144)
+|...+++..+.. .-+...|+.+..++.+ .|..++| ...+++.....
T Consensus 218 eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 218 NELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp THHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 9999999999764 3367789889899888 6665777 47777755433
No 101
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=3.8e-06 Score=52.40 Aligned_cols=88 Identities=13% Similarity=-0.033 Sum_probs=54.5
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|++.|++..+.... +...|..+..++...|++++|...|++..+..- -+...|..+-.++...|++++
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~ 97 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLARFDMADYKG 97 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHH
Confidence 345566666666666666654333 556666666666666666666666666655321 245566666666666666666
Q ss_pred HHHHHHHHHH
Q 045403 84 AYRTMVDMHK 93 (144)
Q Consensus 84 a~~~~~~m~~ 93 (144)
|...+++..+
T Consensus 98 A~~~~~~al~ 107 (164)
T 3sz7_A 98 AKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 102
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.60 E-value=2.1e-06 Score=51.68 Aligned_cols=96 Identities=15% Similarity=0.043 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG--HQPE----EELCS 104 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~----~~~~~ 104 (144)
..+..+...+.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|...+++..+.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345555566666666666666666655431 1244556666666666666666666666554321 1111 12444
Q ss_pred HHHHHHhccCChHHHHHHHHHhh
Q 045403 105 SLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 105 ~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
.+-.++...|++++|.+.|++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555666666666666666543
No 103
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=2.9e-06 Score=51.84 Aligned_cols=89 Identities=8% Similarity=-0.061 Sum_probs=77.7
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|.+.|+......+. +...|..+-.++.+.|++++|...|++..+... -+...+..+-.++...|++++
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~ 104 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQLGDLDG 104 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHH
Confidence 567889999999999999876544 788899999999999999999999999987532 456778889999999999999
Q ss_pred HHHHHHHHHHC
Q 045403 84 AYRTMVDMHKK 94 (144)
Q Consensus 84 a~~~~~~m~~~ 94 (144)
|...+++..+.
T Consensus 105 A~~~~~~al~~ 115 (142)
T 2xcb_A 105 AESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 104
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=3.3e-06 Score=52.71 Aligned_cols=101 Identities=11% Similarity=-0.153 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045403 28 YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLI 107 (144)
Q Consensus 28 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 107 (144)
.+...|..+...+.+.|++++|...|++..+..- -+...|..+..+|...|++++|...+++..+.. +-+...|..+-
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567888899999999999999999999887532 478889999999999999999999999998754 33577899999
Q ss_pred HHHhccCChHHHHHHHHHhhhcC
Q 045403 108 FHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 108 ~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
.+|.+.|++++|.+.+++.....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999876543
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.59 E-value=4.9e-07 Score=69.03 Aligned_cols=122 Identities=11% Similarity=-0.091 Sum_probs=104.7
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
.++.+.|++++|.+.|++..+.... +...|..+-.++...|++++|...|++..+..- -+...|..+-.++.+.|+++
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~ 518 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTD 518 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCC
T ss_pred HHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChH
Confidence 3577889999999999999886544 788999999999999999999999999887532 35678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+ ...+++..+.+ +-+...|..+-.++.+.|++++|.+.+++..+
T Consensus 519 ~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 519 E-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp T-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred H-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 9 99999998753 33567888999999999999999999998764
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=1.8e-06 Score=53.45 Aligned_cols=89 Identities=10% Similarity=0.031 Sum_probs=77.6
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.+.|++++|...|+......+. +...|..+-.++...|++++|...|++..+..- -+...+..+-.++...|++++
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~~ 107 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQXGELAE 107 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 567899999999999999876544 888999999999999999999999999887532 356788889999999999999
Q ss_pred HHHHHHHHHHC
Q 045403 84 AYRTMVDMHKK 94 (144)
Q Consensus 84 a~~~~~~m~~~ 94 (144)
|...|++..+.
T Consensus 108 A~~~~~~al~~ 118 (148)
T 2vgx_A 108 AESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 107
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=9e-07 Score=52.37 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=42.2
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC----HHHHHHHHHHHHHh
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI--SPD----YNTFHILIKYFRKE 78 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~li~~~~~~ 78 (144)
+.+.|++++|...|++..+... .+...+..+...+...|++++|...+++..+... .++ ..++..+..++...
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 92 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKE 92 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555544322 2444455555555555555555555555443211 111 34444555555555
Q ss_pred CcHHHHHHHHHHHHH
Q 045403 79 KMYMLAYRTMVDMHK 93 (144)
Q Consensus 79 g~~~~a~~~~~~m~~ 93 (144)
|++++|...+++..+
T Consensus 93 ~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 93 EKYKDAIHFYNKSLA 107 (131)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555544
No 108
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=1e-05 Score=48.95 Aligned_cols=100 Identities=12% Similarity=-0.065 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHH
Q 045403 28 YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD----YNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELC 103 (144)
Q Consensus 28 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 103 (144)
.+...+..+...+...|++++|...|++..+. .|+ ...|..+..++...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 46678888888889999999999999988764 465 5778888888999999999999998887642 2356777
Q ss_pred HHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 104 SSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 104 ~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
..+..++...|++++|.+.+++.....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888888899999999999999876543
No 109
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.2e-05 Score=48.65 Aligned_cols=103 Identities=11% Similarity=-0.048 Sum_probs=82.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYD----VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 78 (144)
..+.+.|++++|.+.|++..+. .|+ ...|..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 112 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKL 112 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHc
Confidence 3567889999999999999875 444 6888999999999999999999999987752 23678889999999999
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 79 KMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
|++++|...+++..+.. +.+...+..+...
T Consensus 113 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 113 GRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp TCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 99999999999998643 2234444444443
No 110
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=2.5e-06 Score=50.96 Aligned_cols=94 Identities=6% Similarity=-0.071 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK 112 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 112 (144)
+-.+...+.+.|++++|...|++..+..- -+...|..+-.++...|++++|...+++..+.. +-+...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 44455666677777777777777765321 356667777777777777777777777776542 2245566667777777
Q ss_pred cCChHHHHHHHHHhhh
Q 045403 113 MRAHSEALCLQHVKDI 128 (144)
Q Consensus 113 ~g~~~~a~~l~~~m~~ 128 (144)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776553
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.54 E-value=3.3e-06 Score=57.69 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=95.5
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC----HHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYD-KYDV----VLLNSMLCAYCRTGDMESVIHVMRKLDELAIS-PD----YNTFHILI 72 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~-~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li 72 (144)
..+.+.|++++|.+++++..+... .|+. ..+..+...+...+++++|...|++..+.... +| ..+++.+.
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 456788999999999999886432 2332 23445677777788999999999999874322 33 33689999
Q ss_pred HHHHHhCcHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 73 KYFRKEKMYMLAYRTMVDMHK----K-GHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..|...|++++|...+++..+ . +..+. ..++..+..+|.+.|++++|.+.+++...
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999873 2 22222 33778889999999999999999987543
No 112
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.53 E-value=5e-06 Score=49.91 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=78.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|...|+......+. +...|..+..++...|++++|...+++..+... .+...+..+..++...|+++
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~ 94 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESYD 94 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHHhhHH
Confidence 3577899999999999998876544 688999999999999999999999999987532 46788999999999999999
Q ss_pred HHHHHHHHHHH
Q 045403 83 LAYRTMVDMHK 93 (144)
Q Consensus 83 ~a~~~~~~m~~ 93 (144)
+|...+++..+
T Consensus 95 ~A~~~~~~a~~ 105 (137)
T 3q49_B 95 EAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 113
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.52 E-value=6.3e-07 Score=53.04 Aligned_cols=104 Identities=8% Similarity=-0.078 Sum_probs=75.7
Q ss_pred ccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKY--DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
..|++++|+..|++..+.+ -+.+...|..+..++...|++++|...|++..+... -+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998764 233668888999999999999999999999887533 3577888899999999999999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHh
Q 045403 85 YRTMVDMHKKG-HQPEEELCSSLIFHLG 111 (144)
Q Consensus 85 ~~~~~~m~~~~-~~~~~~~~~~l~~~~~ 111 (144)
...+++..+.. -.|+...|...+..|.
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999887542 1223333444444443
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=1.7e-05 Score=48.83 Aligned_cols=101 Identities=12% Similarity=-0.033 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIF 108 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 108 (144)
....|..+...+...|++++|...|++..+... .+..++..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 346677888889999999999999999887532 468889999999999999999999999998753 346778888999
Q ss_pred HHhccCChHHHHHHHHHhhhcCC
Q 045403 109 HLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
++.+.|++++|.+.+++.....+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999876443
No 115
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.49 E-value=3.2e-06 Score=56.62 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=97.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHh--------cCCHHHHHHHHHHhhhCCCCCC-HHHH---
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDK-Y-DVVLLNSMLCAYCR--------TGDMESVIHVMRKLDELAISPD-YNTF--- 68 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~-~~~~--- 68 (144)
.+|.+.|++++|...|+...+..+. | ....+..+..++.. .|++++|...|++..+.. |+ ....
T Consensus 60 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~ 137 (261)
T 3qky_A 60 RAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT 137 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH
Confidence 4577899999999999999886442 2 24567778888888 999999999999998753 32 2223
Q ss_pred --------------HHHHHHHHHhCcHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhcc----------CChHHHHHH
Q 045403 69 --------------HILIKYFRKEKMYMLAYRTMVDMHKKGHQ-P-EEELCSSLIFHLGKM----------RAHSEALCL 122 (144)
Q Consensus 69 --------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~l~~~~~~~----------g~~~~a~~l 122 (144)
..+...|.+.|++++|...+++..+.... + ....+..+..+|.+. |++++|...
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 45577899999999999999999864311 1 245677777788766 889999999
Q ss_pred HHHhhhcCC
Q 045403 123 QHVKDIAKD 131 (144)
Q Consensus 123 ~~~m~~~~~ 131 (144)
++++....+
T Consensus 218 ~~~~~~~~p 226 (261)
T 3qky_A 218 YERLLQIFP 226 (261)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHCC
Confidence 999876543
No 116
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.48 E-value=2.4e-06 Score=58.47 Aligned_cols=127 Identities=7% Similarity=-0.140 Sum_probs=97.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC----HHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAK----YDKYD-VVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS-PD----YNTFHILI 72 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li 72 (144)
..|...|++++|.+.|++.... |-+++ ..+|+.+..+|.+.|++++|...|++..+.... .+ ..+++.+-
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566789999999999887653 22222 578999999999999999999999887653111 11 35788888
Q ss_pred HHHHHh-CcHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 73 KYFRKE-KMYMLAYRTMVDMHKKGHQ-PE----EELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 73 ~~~~~~-g~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..|... |++++|...+++..+..-. .+ ..++..+...+.+.|++++|...+++....
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999996 9999999999998753110 11 346888899999999999999999997764
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.48 E-value=1.8e-05 Score=51.98 Aligned_cols=127 Identities=9% Similarity=0.040 Sum_probs=91.7
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCH-HHHHHHHHHHHH--
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS-PDY-NTFHILIKYFRK-- 77 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~~~li~~~~~-- 77 (144)
.+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|...|++..+..-. +.. .++-.+-.++..
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 56788999999999999987644321 367888899999999999999999999875322 221 234444444443
Q ss_pred ----------------hCcHHHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHhccCChHHHHHHH
Q 045403 78 ----------------EKMYMLAYRTMVDMHKKGHQPEEE-LC-----------------SSLIFHLGKMRAHSEALCLQ 123 (144)
Q Consensus 78 ----------------~g~~~~a~~~~~~m~~~~~~~~~~-~~-----------------~~l~~~~~~~g~~~~a~~l~ 123 (144)
.|+.++|...|++..+. .|+.. .+ -.+...|.+.|++++|...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 170 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRV 170 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 57899999999999864 23321 22 23455688899999999999
Q ss_pred HHhhhcCCC
Q 045403 124 HVKDIAKDR 132 (144)
Q Consensus 124 ~~m~~~~~~ 132 (144)
+++.+..+.
T Consensus 171 ~~~l~~~p~ 179 (225)
T 2yhc_A 171 EGMLRDYPD 179 (225)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHHCcC
Confidence 998765433
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=7.5e-06 Score=55.93 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=95.3
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCCC-HHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDK-YD----VVLLNSMLCAYCRTGDMESVIHVMRKLDEL-----AISPD-YNTFHILI 72 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~~~li 72 (144)
.+...|++++|...|++..+.... ++ ..+++.+..+|...|++++|...|++..+. +..+. ..++..+.
T Consensus 124 ~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 3u3w_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 345678999999999999874322 23 347999999999999999999999998741 22222 23788899
Q ss_pred HHHHHhCcHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCC-hHHHHHHHHHhh
Q 045403 73 KYFRKEKMYMLAYRTMVDMHK----KGHQPE-EELCSSLIFHLGKMRA-HSEALCLQHVKD 127 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~~~g~-~~~a~~l~~~m~ 127 (144)
..|.+.|++++|...+++..+ .+..+. ...|..+-.+|.+.|+ .++|.+.+++..
T Consensus 204 ~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999988763 233333 6688889999999994 688888887643
No 119
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.48 E-value=9.6e-06 Score=47.77 Aligned_cols=100 Identities=8% Similarity=0.029 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCC--CCC----HHHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGH--QPE----EELC 103 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~ 103 (144)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888899999999999999999988753 35778899999999999999999999999875421 223 6678
Q ss_pred HHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 104 SSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 104 ~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
..+..++.+.|++++|.+.+++.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 889999999999999999999977643
No 120
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.47 E-value=9e-06 Score=56.51 Aligned_cols=130 Identities=10% Similarity=0.002 Sum_probs=95.0
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKY-----DVVLLNSMLCAYCR----TGDMESVIHVMRKLDELAISPDYNTFHILI 72 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 72 (144)
+..+.+.|+++.|.+.++.|.+. .| +-.+...+..++.. .+++.+|..+|+++.+. .|+..+-..++
T Consensus 143 vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLl 218 (310)
T 3mv2_B 143 IEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLL 218 (310)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHH
Confidence 56788999999999999999875 55 35555666666332 33899999999998764 36645555666
Q ss_pred HHHHHhCcHHHHHHHHHHHHHC-----CC---CC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHH
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKK-----GH---QP-EEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPF 137 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~-----~~---~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~ 137 (144)
.++.+.|++++|.+.++.+.+. +- .| +..+...+|......|+ +|.++++++.+..+..|+..
T Consensus 219 n~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 219 NLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 6999999999999999977642 11 14 55566456666666676 88999999998766665543
No 121
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=1.9e-06 Score=52.68 Aligned_cols=126 Identities=17% Similarity=0.059 Sum_probs=95.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDK-YD----VVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-SPD----YNTFHILI 72 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li 72 (144)
..+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...+++..+..- .++ ..++..+.
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 96 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 96 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 3567789999999999997754221 11 25788899999999999999999998764311 122 45677888
Q ss_pred HHHHHhCcHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKK----GHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 97 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 97 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8899999999999999888642 2111 234677788889999999999999998654
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=2.6e-06 Score=54.46 Aligned_cols=121 Identities=9% Similarity=-0.039 Sum_probs=69.6
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHHhCc
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AIS-PDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~ 80 (144)
...|++++|.+.++.... .......+++.+-..+...|++++|...+++..+. |.. ....++..+-..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356777777775444433 22235566777777777777777777777666541 111 123456666666777777
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 81 YMLAYRTMVDMHKK----GHQP--EEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 81 ~~~a~~~~~~m~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+++|...+++..+. +-.| ....+..+-..+...|++++|...+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777777666532 1111 12345566666777777777777776644
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=1.4e-06 Score=55.81 Aligned_cols=126 Identities=11% Similarity=-0.078 Sum_probs=94.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCC----HHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAK----YD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL--AISPD----YNTFHIL 71 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~----~~~~~~l 71 (144)
..+...|++++|...+++.... +. +....+++.+-..+...|++++|...+++..+. ....+ ...+..+
T Consensus 34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 113 (203)
T 3gw4_A 34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV 113 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 3567789999999999998762 12 234577888999999999999999999887653 12112 3457888
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHKK----GHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
-..+...|++++|...+++..+. +-.. ...++..+..++...|++++|.+.+++...
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88899999999999999888632 2111 123457788889999999999999987544
No 124
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.45 E-value=2.5e-05 Score=57.62 Aligned_cols=119 Identities=10% Similarity=0.021 Sum_probs=93.1
Q ss_pred cCCHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHh
Q 045403 8 GGCFE-------EAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD--YNTFHILIKYFRKE 78 (144)
Q Consensus 8 ~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~ 78 (144)
.|+++ +|..+|+...+.-.+-+...|..+...+.+.|++++|..+|++..+. .|+ ...|......+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 68877 99999999886323447899999999999999999999999999884 454 25899999999999
Q ss_pred CcHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCChHHHHHHHHHhhhc
Q 045403 79 KMYMLAYRTMVDMHKKGHQPEEELCSSLIF-HLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~l~~~m~~~ 129 (144)
|+.++|..+|++..+.. ..+...|..... .+...|+.++|..+|++..+.
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 99999999999998652 223333332222 234689999999999987653
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.44 E-value=3.8e-06 Score=53.15 Aligned_cols=121 Identities=10% Similarity=0.056 Sum_probs=90.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCc
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCA-YCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKM 80 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 80 (144)
.++.+.|++++|...|+......+ +...+...... +.+.+...++...+++..+. .| +...+..+...+...|+
T Consensus 48 ~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 48 DCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGR 123 (176)
T ss_dssp HHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 457789999999999999876533 44433332212 22222334567888887764 35 57889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 81 YMLAYRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+++|...+++..+....+ +...+..+..++...|+.++|...+++..
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 999999999998764332 35688889999999999999999998754
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.42 E-value=8.9e-06 Score=55.83 Aligned_cols=125 Identities=10% Similarity=0.036 Sum_probs=97.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY----NTFHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~ 78 (144)
.++...|++++|.++|+.....+ |+....-++-..+.+.+++++|+..|+...+. |+. ..+..+-.++...
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHHHHC
Confidence 45778999999999999988754 33335566666899999999999999865543 333 3677778889999
Q ss_pred CcHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhhhcCCC
Q 045403 79 KMYMLAYRTMVDMHKKGHQPE--EELCSSLIFHLGKMRAHSEALCLQHVKDIAKDR 132 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~ 132 (144)
|++++|...|++.......|. .......-.++.+.|+.++|..+|+++....+.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999975443254 335566777888999999999999999875544
No 127
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=1.4e-05 Score=47.36 Aligned_cols=88 Identities=19% Similarity=0.127 Sum_probs=60.5
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDV---VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD----YNTFHILIKYFR 76 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~ 76 (144)
.+.+.|++++|.+.|+...+..+. +. ..+..+..++.+.|++++|...|++..+.. |+ ..++..+..++.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHH
Confidence 455677888888888877765333 22 466667777777788888888887776642 32 455666777777
Q ss_pred HhCcHHHHHHHHHHHHHC
Q 045403 77 KEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~ 94 (144)
..|+.++|...+++..+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888887777777654
No 128
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=7.6e-06 Score=59.68 Aligned_cols=122 Identities=8% Similarity=0.011 Sum_probs=97.7
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYD--------------VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTF 68 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 68 (144)
..+.+.|++++|...|++..+...... ...|..+-.++.+.|++++|...+++..+..- .+...|
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~ 354 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGL 354 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHH
Confidence 357789999999999999887533322 68999999999999999999999999987532 478889
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH-HHHHh
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALC-LQHVK 126 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-l~~~m 126 (144)
..+-.+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++.+ +++.|
T Consensus 355 ~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 355 YRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998653 2245678888888888888887664 44444
No 129
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.41 E-value=4.4e-06 Score=59.01 Aligned_cols=125 Identities=10% Similarity=-0.102 Sum_probs=96.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYD------KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-SPD----YNTFHILI 72 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li 72 (144)
+|...|++++|...+++..+... +....+++.+...|...|++++|...|++..+..- .++ ..++..+-
T Consensus 152 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 231 (383)
T 3ulq_A 152 SYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIG 231 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 56678888999888888765311 11246788899999999999999999988764311 122 24788899
Q ss_pred HHHHHhCcHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKK----GH-QPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..|...|++++|...+++..+. +. .....++..+..+|.+.|++++|.+.+++...
T Consensus 232 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 232 LCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988752 33 23456788899999999999999999998554
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=1.3e-05 Score=54.71 Aligned_cols=121 Identities=9% Similarity=-0.034 Sum_probs=80.0
Q ss_pred hhccCCHHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCC-----HHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYD---KYD--VVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AISPD-----YNTFHILIK 73 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~---~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~ 73 (144)
+...|++++|...+++..+... .+. ..+|+.+...|...|++++|...|++..+. ...|+ ..++..+..
T Consensus 125 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence 4556788888888877664321 112 457778888888888888888888777621 01122 247777778
Q ss_pred HHHHhCcHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHH-HHHHHH
Q 045403 74 YFRKEKMYMLAYRTMVDMHKK----GHQP-EEELCSSLIFHLGKMRAHSEA-LCLQHV 125 (144)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a-~~l~~~ 125 (144)
.|...|++++|...+++..+. +... -..+|..+-.+|.+.|+.++| ...+++
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 888888888888888776532 1111 155677777788888888888 665554
No 131
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.40 E-value=2.5e-05 Score=51.28 Aligned_cols=123 Identities=10% Similarity=0.081 Sum_probs=91.3
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHh------------------cCCHHHHHHHHHHhhhCCCC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDV--VLLNSMLCAYCR------------------TGDMESVIHVMRKLDELAIS 62 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~------------------~~~~~~a~~~~~~m~~~g~~ 62 (144)
.++.+.|++++|+..|++..+..+.... ..+-.+..++.. .|++++|...|++..+..
T Consensus 49 ~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-- 126 (225)
T 2yhc_A 49 YAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-- 126 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--
Confidence 4678899999999999999876544222 234344444433 578999999999998752
Q ss_pred CCHH-HH-----------------HHHHHHHHHhCcHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHH
Q 045403 63 PDYN-TF-----------------HILIKYFRKEKMYMLAYRTMVDMHKKGHQPE----EELCSSLIFHLGKMRAHSEAL 120 (144)
Q Consensus 63 p~~~-~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 120 (144)
|+.. ++ -.+...|.+.|++++|...++++.+. .|+ ...+..+..+|.+.|+.++|.
T Consensus 127 P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 127 PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 3322 22 23455688899999999999999864 243 246778999999999999999
Q ss_pred HHHHHhhhc
Q 045403 121 CLQHVKDIA 129 (144)
Q Consensus 121 ~l~~~m~~~ 129 (144)
+.++.+...
T Consensus 205 ~~~~~l~~~ 213 (225)
T 2yhc_A 205 KVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999988764
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=1.4e-05 Score=48.05 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=81.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCC----HHHHHHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA--ISPD----YNTFHILIKYFR 76 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~~li~~~~ 76 (144)
..+.+.|++++|++.|++..+..+. +...|+.+-.+|.+.|++++|...+++..+.. ..++ ..+|..+-.++.
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3577899999999999999886544 78899999999999999999999999987532 2222 236777888899
Q ss_pred HhCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 77 KEKMYMLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 77 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
..|++++|...|++..+. .|+..+...+
T Consensus 95 ~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 999999999999998763 5787665443
No 133
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.37 E-value=1.2e-05 Score=47.93 Aligned_cols=90 Identities=11% Similarity=-0.056 Sum_probs=77.9
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|...|++..+..+. +...|..+-.++...|++++|...|++..+..- -+...+..+..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 3567899999999999999887544 888999999999999999999999999887532 36778899999999999999
Q ss_pred HHHHHHHHHHHC
Q 045403 83 LAYRTMVDMHKK 94 (144)
Q Consensus 83 ~a~~~~~~m~~~ 94 (144)
+|...+++..+.
T Consensus 103 ~A~~~~~~al~~ 114 (121)
T 1hxi_A 103 AALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.36 E-value=5.1e-05 Score=51.76 Aligned_cols=126 Identities=10% Similarity=-0.019 Sum_probs=94.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CCC--HHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYD-----VVLLNSMLCAYCRTGDMESVIHVMRKLDELAI---SPD--YNTFHILI 72 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~li 72 (144)
..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|...+++..+... .+. ..+++.+-
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456788999999999998776533211 12344566667788999999999998875321 222 45889999
Q ss_pred HHHHHhCcHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKK-GHQPE-----EELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..|...|++++|...+++..+. ...|+ ..++..+..+|.+.|++++|.+.+++...
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999988721 01122 25788899999999999999999997543
No 135
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.36 E-value=7.5e-06 Score=62.57 Aligned_cols=121 Identities=11% Similarity=-0.099 Sum_probs=101.5
Q ss_pred hccCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 045403 6 CRGGCFEEAKQLARDFE--------AKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK 77 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 77 (144)
...|++++|.+.+++.. +.. +.+...|..+..++.+.|++++|...|++..+..- -+...|..+-.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 46799999999999987 432 34678899999999999999999999999987422 467889999999999
Q ss_pred hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 78 EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
.|++++|...|++..+.. +-+...+..+-.++.+.|++++ .+.+++..+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~ 530 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN 530 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence 999999999999998753 2356678889999999999999 99999876543
No 136
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.36 E-value=9.5e-06 Score=57.27 Aligned_cols=126 Identities=10% Similarity=-0.048 Sum_probs=97.3
Q ss_pred hhhccCCHHHHHHHHHHHHhcCC-----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYD-----K-YDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AISP-DYNTFHILI 72 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~-----~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li 72 (144)
+|...|++++|...+++..+... . ....+++.+-..|...|++++|...|++..+. +-.+ ...++..+-
T Consensus 150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 229 (378)
T 3q15_A 150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA 229 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778999999999988765311 1 13567889999999999999999999887652 1111 234678888
Q ss_pred HHHHHhCcHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKK----GHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+|...|++++|...+++..+. +.+....++..+..+|.+.|+.++|...+++...-
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8999999999999999998761 22223667888999999999999999999986553
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=3.2e-06 Score=54.43 Aligned_cols=121 Identities=11% Similarity=-0.040 Sum_probs=89.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CC---C-----------HHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-SP---D-----------YNTFHIL 71 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p---~-----------~~~~~~l 71 (144)
..|+++++.+.|+.-... .......+..+-..+...|++++|...|++..+..- .| . ...|..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 345555555555532221 122456778888889999999999999999886421 12 1 2788889
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..+|...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.+++....
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999999998753 346778888999999999999999999987654
No 138
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=3.8e-05 Score=45.43 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDELAISPDY---NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE----EELCSSLI 107 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~ 107 (144)
.+...+...|++++|...|++..+..- .+. ..+..+..++...|++++|...+++..+.. |+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 455677889999999999999987532 122 477788889999999999999999998753 33 56677888
Q ss_pred HHHhccCChHHHHHHHHHhhhcC
Q 045403 108 FHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 108 ~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
.++.+.|+.++|.+.+++.....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 89999999999999999987644
No 139
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=1.1e-05 Score=57.45 Aligned_cols=117 Identities=9% Similarity=0.064 Sum_probs=91.9
Q ss_pred hhhhccCCHHHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAK---------------YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT 67 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 67 (144)
..+.+.|++++|.+.|++..+. --+.+..+|+.+-.++.+.|++++|...+++..+..- -+...
T Consensus 231 ~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a 309 (370)
T 1ihg_A 231 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKA 309 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHH
Confidence 3567889999999999998761 1123567889999999999999999999999887532 46788
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALC 121 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 121 (144)
+..+-.+|...|++++|...+++..+.. +-+...+..+..++.+.++.+++.+
T Consensus 310 ~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 310 LYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998653 2356677777777777766666543
No 140
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.32 E-value=4.3e-06 Score=58.76 Aligned_cols=126 Identities=17% Similarity=0.038 Sum_probs=95.8
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYD-KYD----VVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-SPD----YNTFHILI 72 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li 72 (144)
..+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++..+... .++ ..++..+.
T Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 456778999999999999765311 112 34788999999999999999999998764311 112 45788889
Q ss_pred HHHHHhCcHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKK----GHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..|...|++++|...+++..+. +-.+ ...++..+..+|.+.|++++|.+.+++..+
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999988642 1111 155777888999999999999999998544
No 141
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.30 E-value=5.3e-05 Score=48.77 Aligned_cols=92 Identities=9% Similarity=-0.052 Sum_probs=77.7
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--------------C-CHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS--------------P-DYNT 67 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--------------p-~~~~ 67 (144)
.++.+.|++++|.+.|++..+... .+...|..+..++...|++++|...|++..+..-. | +...
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T 1hh8_A 45 CMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV 123 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHH
Confidence 457789999999999999987653 37889999999999999999999999999874221 1 2367
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
+..+..++...|++++|...+++..+..
T Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 124 LYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8889999999999999999999998653
No 142
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.29 E-value=6.2e-06 Score=60.86 Aligned_cols=125 Identities=14% Similarity=0.050 Sum_probs=96.2
Q ss_pred hhccCCHHHHHHHHHHHHhc-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CCC-HHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAK-----YD-KY-DVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-----AI-SPD-YNTFHI 70 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~ 70 (144)
+...|++++|..++++..+. |. .| ...+++.|..+|...|++++|..++++..+- |- .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55789999999999987653 22 12 3478999999999999999999999887632 32 233 345899
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHH-----CCC-CC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 71 LIKYFRKEKMYMLAYRTMVDMHK-----KGH-QP-EEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~m~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
|-..|...|++++|..++++..+ .|- .| ...+.+.+-.++.+.|.+.+|..+++++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888763 232 22 2345566777888899999999999998875
No 143
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.28 E-value=4.7e-06 Score=56.73 Aligned_cols=126 Identities=16% Similarity=0.041 Sum_probs=94.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYD-----KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-SPD----YNTFHILI 72 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li 72 (144)
..+...|++++|.+.+++..+... .....++..+...+...|++++|...+++..+... .++ ..++..+.
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 356778999999999998765311 11234788889999999999999999988764311 122 45678888
Q ss_pred HHHHHhCcHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKK----GHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..+...|++++|...+++..+. +-.+ ...++..+...|.+.|++++|.+.+++...
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8999999999999999888642 1111 244677888999999999999999998764
No 144
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.28 E-value=2e-06 Score=60.92 Aligned_cols=124 Identities=11% Similarity=0.004 Sum_probs=97.3
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCCHHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVIHVMRKLDEL----AI-SPDYNTFHILIKY 74 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~ 74 (144)
.+.+.|++++|.+.|++..+.... +. ..|..+...+...|++++|...+++..+. +- .....++..+...
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 567889999999999999886443 33 57889999999999999999999987643 11 1234578888899
Q ss_pred HHHhCcHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCC-----------------hHHHHHHHHHhhh
Q 045403 75 FRKEKMYMLAYRTMVDMHKK----GHQ-PEEELCSSLIFHLGKMRA-----------------HSEALCLQHVKDI 128 (144)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~-----------------~~~a~~l~~~m~~ 128 (144)
|...|++++|...+++..+. +-. ....++..+...|...|+ +++|.+.+++...
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999887643 111 234477788889999999 9999999887543
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=5.5e-05 Score=51.56 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=70.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
..+.+.|++++|...|++..+..+. +...|..+..++...|++++|...+++..+..- -+...+..+..++...|+++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~ 89 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESYD 89 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 3566788888888888888776433 778888888888888888888888888776422 35677888888888888888
Q ss_pred HHHHHHHHHHH
Q 045403 83 LAYRTMVDMHK 93 (144)
Q Consensus 83 ~a~~~~~~m~~ 93 (144)
+|...+++..+
T Consensus 90 ~A~~~~~~al~ 100 (281)
T 2c2l_A 90 EAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 146
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=2.7e-06 Score=50.24 Aligned_cols=88 Identities=13% Similarity=-0.046 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 045403 42 RTGDMESVIHVMRKLDELAI--SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119 (144)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 119 (144)
..|++++|...|++..+.+. +-+...+..+..+|...|++++|...+++..+.. +-+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35788999999999988642 2345678889999999999999999999998753 23577888899999999999999
Q ss_pred HHHHHHhhhcC
Q 045403 120 LCLQHVKDIAK 130 (144)
Q Consensus 120 ~~l~~~m~~~~ 130 (144)
...+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999876543
No 147
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.25 E-value=8.6e-05 Score=48.39 Aligned_cols=117 Identities=13% Similarity=0.031 Sum_probs=67.2
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH---
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG----DMESVIHVMRKLDELAISPDYNTFHILIKYFRK--- 77 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--- 77 (144)
|.+.+++++|.+.|++..+.| +...+..+-..|.. + ++++|...|++..+.| +...+..+-..|..
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g 100 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQA 100 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGG
T ss_pred HhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 444566777777777666543 44555555555555 4 6666777666665543 34455555555554
Q ss_pred -hCcHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc----cCChHHHHHHHHHhhh
Q 045403 78 -EKMYMLAYRTMVDMHKKGHQ-PEEELCSSLIFHLGK----MRAHSEALCLQHVKDI 128 (144)
Q Consensus 78 -~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~l~~~m~~ 128 (144)
.++.++|..++++..+.|.. .....+..|-..|.+ .++.++|..++++..+
T Consensus 101 ~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 101 GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 55666666666666654321 014455555555555 5566666666666543
No 148
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.24 E-value=1e-05 Score=55.72 Aligned_cols=123 Identities=8% Similarity=-0.035 Sum_probs=82.1
Q ss_pred hhhccCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---C--CHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAK----YDK-YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS---P--DYNTFHILIK 73 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---p--~~~~~~~li~ 73 (144)
+|.+.|++++|...|++..+. |-. .-..+++.+-..|.. |++++|...|++..+..-. + ...++..+..
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 163 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 455667888888888776543 111 123567777788877 8888888888876642110 0 1356777888
Q ss_pred HHHHhCcHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 74 YFRKEKMYMLAYRTMVDMHKK----GHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 74 ~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
.|...|++++|...+++..+. +..+. ...+..+..++...|++++|...+++..
T Consensus 164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888888888888887642 21111 2255566667777788888888888865
No 149
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.24 E-value=4.7e-06 Score=56.74 Aligned_cols=125 Identities=9% Similarity=-0.083 Sum_probs=96.8
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AISP-DYNTFHILIKYF 75 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~ 75 (144)
.+.+.|++++|...|++..+...... ...+..+...+...|++++|...+++..+. +-.| ...++..+...+
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 56788999999999999988643311 478889999999999999999999886542 2122 245788888999
Q ss_pred HHhCcHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------hHHHHHHHHHhhh
Q 045403 76 RKEKMYMLAYRTMVDMHKKGH-QPE----EELCSSLIFHLGKMRA--------------------HSEALCLQHVKDI 128 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~l~~~m~~ 128 (144)
...|++++|...+++..+..- .++ ..++..+...+...|+ +++|.+.+++...
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999998764210 122 3477788889999999 9999999887543
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=5.6e-05 Score=52.89 Aligned_cols=101 Identities=9% Similarity=-0.073 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD--------------YNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
+...|..+-..+.+.|++++|...|++..+..-... ..+|..+-.+|.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999999887532221 588999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 95 GHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
. +.+...+..+-.+|.+.|++++|...|++..+..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3 3467789999999999999999999999977643
No 151
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=2e-05 Score=48.92 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=74.0
Q ss_pred hhhccCCHHHHHHHHHHHHhc--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAK--------Y---------DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN 66 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 66 (144)
.+.+.|++++|+..|++.... . -+-+...|..+..++.+.|++++|...+++..+.. +.+..
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 98 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEK 98 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchH
Confidence 567889999999999998764 1 11234788889999999999999999999988753 24677
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 67 TFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
.|..+-.++...|++++|...+++..+.
T Consensus 99 a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 99 ALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 8999999999999999999999998865
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.24 E-value=2.3e-05 Score=49.26 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=77.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCA-YCRTGDM--ESVIHVMRKLDELAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 79 (144)
.+|...|++++|...|++..+..+. +...+..+..+ +...|++ ++|...+++..+... -+...+..+...+...|
T Consensus 52 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 129 (177)
T 2e2e_A 52 EYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTRAMIDKALALDS-NEITALMLLASDAFMQA 129 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcc
Confidence 4567889999999999998876544 67788888888 7788998 999999999987532 45778889999999999
Q ss_pred cHHHHHHHHHHHHHCC
Q 045403 80 MYMLAYRTMVDMHKKG 95 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~ 95 (144)
++++|...+++..+..
T Consensus 130 ~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 130 NYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhhC
Confidence 9999999999998753
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.23 E-value=4.5e-05 Score=51.98 Aligned_cols=98 Identities=7% Similarity=-0.199 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIF 108 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 108 (144)
+...+..+...+...|++++|...|++..+..- -+...|..+..+|...|++++|...+++..+.. +-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 566778888899999999999999999887522 377889999999999999999999999988653 335678888899
Q ss_pred HHhccCChHHHHHHHHHhhh
Q 045403 109 HLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~~~m~~ 128 (144)
+|.+.|++++|...+++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987554
No 154
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.22 E-value=8.5e-06 Score=55.73 Aligned_cols=122 Identities=7% Similarity=-0.064 Sum_probs=95.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLN-SMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
.++.+.|++++|.+.+++..... |+..... .....+.+.++.++|...+++..+.. +.+...+..+-..+...|++
T Consensus 159 ~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 159 ETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRN 235 (287)
T ss_dssp HHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccH
Confidence 46778999999999999987653 4443333 33333667777888899998887653 24678899999999999999
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 82 MLAYRTMVDMHKKGHQ-PEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
++|...+.+..+..-. .+...+..+...|...|+.++|...+++-.
T Consensus 236 ~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 236 EEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999975321 126688999999999999999999888743
No 155
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.21 E-value=3.9e-05 Score=54.13 Aligned_cols=122 Identities=12% Similarity=0.034 Sum_probs=87.4
Q ss_pred hhhccCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCHHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAK----YDK-YDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AISPDYNTFHILIKY 74 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~ 74 (144)
+|...|++++|.+.|++..+. +.+ ....+++.+-..|...|++++|...+++..+. +-+....++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 567789999999999887653 111 12357888899999999999999999888761 222336778888999
Q ss_pred HHHhCcHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCC---hHHHHHHHHH
Q 045403 75 FRKEKMYMLAYRTMVDMHKK----GHQPEEELCSSLIFHLGKMRA---HSEALCLQHV 125 (144)
Q Consensus 75 ~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~l~~~ 125 (144)
+.+.|+.++|...+++..+. +-......+..+-..|...|+ +.+|...+++
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99999999999999988753 112223345555566666676 6666666665
No 156
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.21 E-value=2.2e-05 Score=55.40 Aligned_cols=124 Identities=10% Similarity=-0.093 Sum_probs=87.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCCHHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDK-Y----DVVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AI-SPDYNTFHILI 72 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~-p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li 72 (144)
.+|...|++++|.+.|++..+.... + ...+++.+...|...|++++|...+++..+. +- +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 3567789999999999987653111 1 1257888999999999999999999888762 22 33466788899
Q ss_pred HHHHHhCcHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHh
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKK----GHQPEEELCSSLIFHLGKMRA---HSEALCLQHVK 126 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~l~~~m 126 (144)
..+.+.|++++|...+++..+. +-......+..+-..|.+.|+ +++|..++++.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 9999999999999998887642 111112234556666666666 56666666554
No 157
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.21 E-value=8.9e-06 Score=57.03 Aligned_cols=122 Identities=10% Similarity=-0.102 Sum_probs=74.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVV------------------LLNSMLCAYCRTGDMESVIHVMRKLDELAISPD 64 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 64 (144)
..+.+.|++++|...|++.... .|+.. .|+.+-.++.+.|++++|...+++..+.. +.+
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 263 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKN 263 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 3567889999999999998764 34432 78899999999999999999999988753 246
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HhccCChHHHHHHHHHhhhc
Q 045403 65 YNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE-EELCSSLIFH-LGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~-~~~~g~~~~a~~l~~~m~~~ 129 (144)
...|..+-.+|...|++++|...|++..+. .|+ ...+..+... ....+..+++..++..+-..
T Consensus 264 ~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 264 PKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 788999999999999999999999998753 343 3344444444 23456777888888887643
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=7e-05 Score=46.43 Aligned_cols=100 Identities=11% Similarity=-0.091 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--------C---------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDEL--------A---------ISPDYNTFHILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 91 (144)
....+......+.+.|++++|...|.+..+. . -+.+...|..+..+|.+.|++++|...+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888899999999999999988764 0 0123367889999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 92 HKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+.. +.+...|..+-.+|...|++++|...+++...-
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 8753 346778889999999999999999999987654
No 159
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.19 E-value=0.00012 Score=44.57 Aligned_cols=117 Identities=10% Similarity=-0.019 Sum_probs=94.6
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK---- 77 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 77 (144)
..+....+++++|.+.|++..+.|.+ +.. +-..|...+..++|...|++..+.| +...+..+-..|..
T Consensus 2 ~~G~g~~~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 2 VGGGTVKKDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred CCCcCCccCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCC
Confidence 34556677899999999999888733 333 6667777778999999999998864 56788888888887
Q ss_pred hCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhhc
Q 045403 78 EKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK----MRAHSEALCLQHVKDIA 129 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~l~~~m~~~ 129 (144)
.++.++|..+|++..+.| +...+..|-..|.. .++.++|.+++++-.+.
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 889999999999999876 56677778888887 89999999999987654
No 160
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.17 E-value=0.0004 Score=50.70 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHhhh
Q 045403 44 GDMESVIHVMRKLDE 58 (144)
Q Consensus 44 ~~~~~a~~~~~~m~~ 58 (144)
+++++|...|++..+
T Consensus 129 ~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 129 VDKAESVKWFRLAAE 143 (490)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 344444444444333
No 161
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.17 E-value=5.9e-05 Score=48.98 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHH----------------HHHHHHHhCcHHHHHHHHHHHHHCCC
Q 045403 34 NSMLCAYCRTGDMESVIHVMRKLDELAISPD-YNTFHI----------------LIKYFRKEKMYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~~~ 96 (144)
-.....+...|++++|...|++..+. .|+ ...|.. +-.++.+.|++++|...+++..+..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 33445677899999999999998874 343 345666 8889999999999999999998753
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 97 QPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 97 ~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
+-+...+..+-.++.+.|++++|...+++..+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 33677899999999999999999999999876443
No 162
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.13 E-value=7.2e-06 Score=58.02 Aligned_cols=125 Identities=10% Similarity=-0.001 Sum_probs=77.6
Q ss_pred hhhccCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAK----Y-DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AIS-PDYNTFHILIK 73 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~ 73 (144)
+|...|++++|.+.+++..+. + .+....++..+...|...|++++|...+++..+. +-. ....++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 95 AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 456677888888877776543 1 1224466777777777778888877777776542 111 12335666777
Q ss_pred HHHHhCc-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 74 YFRKEKM-----------------YMLAYRTMVDMHKK----GHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 74 ~~~~~g~-----------------~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.|...|+ +++|...+++..+. +-.+ ....+..+...|...|++++|.+.+++...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777 77777777665431 1111 223556666677777777777777776543
No 163
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.10 E-value=1.9e-05 Score=54.34 Aligned_cols=126 Identities=13% Similarity=-0.007 Sum_probs=93.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CC-CCC--HHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYD----K-YDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL--AI-SPD--YNTFHILI 72 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~----~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~-~p~--~~~~~~li 72 (144)
..|...|++++|...|++...... . .-..+|+.+...|.+.|++++|...|++..+. .. .|+ ..++..+-
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346677899999988888764311 1 12468889999999999999999999886542 11 121 35677888
Q ss_pred HHHHHhCcHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKK----GHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..|.. |++++|...+++..+. |-.+ ...++..+...|.+.|++++|...+++....
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888 9999999999988642 1111 1457888899999999999999999986653
No 164
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.09 E-value=1.9e-05 Score=55.37 Aligned_cols=125 Identities=8% Similarity=-0.088 Sum_probs=96.6
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVIHVMRKLDEL----AISP-DYNTFHILIKYF 75 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~ 75 (144)
.+.+.|++++|...|++..+...... ..+|..+...+...|++++|...+++..+. +-.| ...++..+...+
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 56788999999999999988643311 367889999999999999999999886532 2222 245688888899
Q ss_pred HHhCcHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------hHHHHHHHHHhhh
Q 045403 76 RKEKMYMLAYRTMVDMHKKGH-QPE----EELCSSLIFHLGKMRA--------------------HSEALCLQHVKDI 128 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~l~~~m~~ 128 (144)
...|++++|...+++..+..- .++ ..++..+...|...|+ +++|.+.+++...
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999988864210 112 4478888889999999 9999999887543
No 165
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=8.9e-06 Score=46.89 Aligned_cols=95 Identities=9% Similarity=-0.018 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCC-------HH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE-------EE 101 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-------~~ 101 (144)
+...|..+...+...|++++|...|++..+.. +.+...|..+-.++...|++++|...+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 55677888888889999999999998887652 246778888888999999999999999988864 343 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh
Q 045403 102 LCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 102 ~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
.+..+-.++...|+.+.|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4555555666666666555544433
No 166
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.06 E-value=0.00087 Score=48.88 Aligned_cols=113 Identities=9% Similarity=-0.130 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----hC
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK----EK 79 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 79 (144)
.+++++|...|++..+.| +...+..+-..|.. .+++++|...|++..+.| +...+..+-..|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 789999999999988753 56778888888888 899999999999998865 56777778888877 78
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhhc
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGK----MRAHSEALCLQHVKDIA 129 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~l~~~m~~~ 129 (144)
+.++|..+|++..+.| +...+..+-..|.. .++.++|.+++++..+.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 9999999999988765 45666667777766 77888898888876653
No 167
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.06 E-value=9.3e-05 Score=43.15 Aligned_cols=79 Identities=9% Similarity=0.006 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 13 EAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 13 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
+|.+.|++..+..+. +...|..+...+...|++++|...|++..+..- .+...|..+..++...|+.++|...+++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567788887765443 788899999999999999999999999887532 457788999999999999999999999887
Q ss_pred H
Q 045403 93 K 93 (144)
Q Consensus 93 ~ 93 (144)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.04 E-value=0.00013 Score=45.85 Aligned_cols=90 Identities=11% Similarity=-0.003 Sum_probs=65.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCCC-HH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKY------DV-----VLLNSMLCAYCRTGDMESVIHVMRKLDEL-----AISPD-YN 66 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p------~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~ 66 (144)
.+.+.|++++|++.|++.....+.. +. ..|+.+-.++.+.|++++|...+++..+. .+.|| ..
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~ 99 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 99 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH
Confidence 4567899999999999887753331 22 38888888888888888888888887763 12454 34
Q ss_pred HH----HHHHHHHHHhCcHHHHHHHHHHHHH
Q 045403 67 TF----HILIKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 67 ~~----~~li~~~~~~g~~~~a~~~~~~m~~ 93 (144)
.| ...-.++...|++++|...|++..+
T Consensus 100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 100 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56 7777778888888888888887764
No 169
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.01 E-value=0.00019 Score=50.22 Aligned_cols=124 Identities=14% Similarity=0.018 Sum_probs=79.4
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCH----HHHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVIHVMRKLDELAI-SPDY----NTFHILIKYF 75 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~li~~~ 75 (144)
+...|++++|...+++........+. .+++.+...+...|++++|...+++..+..- .++. .++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 44578888888888887664333222 2456666777778888888888877654210 1222 2345566677
Q ss_pred HHhCcHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 76 RKEKMYMLAYRTMVDMHKK----GHQ--PE-EELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~----~~~--~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
...|++++|...+++..+. +.. |. ...+..+-..+...|++++|...+++...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7788888888887777532 221 22 33455566777788888888888877544
No 170
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.01 E-value=0.00019 Score=50.19 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=91.0
Q ss_pred hhhccCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--C--CHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAK----YDK--Y-DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS--P--DYNTFHILI 72 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~li 72 (144)
.+...|++++|.+.+++..+. +.. | ....+..+-..+...|++++|...+++..+..-. + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 466789999999999987653 221 2 3456777888999999999999999987653221 1 245678888
Q ss_pred HHHHHhCcHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHhccCChHHHHHHHHHhhhc
Q 045403 73 KYFRKEKMYMLAYRTMVDMHKKGHQP--EEELCS----SLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~----~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..+...|++++|...+++.....-.+ ...... .....+...|+.++|..++++....
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 88999999999999999887431111 111111 2334477899999999999987653
No 171
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.98 E-value=0.001 Score=43.22 Aligned_cols=116 Identities=10% Similarity=-0.026 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHH----hCc
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVIHVMRKLDELAIS-PDYNTFHILIKYFRK----EKM 80 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~ 80 (144)
+.++|.+.|++..+.| +...+..+-..|.. .+++++|...|++..+.|.. .+...+..+-..|.. .++
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 8999999999997653 66778888888877 88999999999998876432 126788888888888 889
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-----ChHHHHHHHHHhhhcC
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKM-R-----AHSEALCLQHVKDIAK 130 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~l~~~m~~~~ 130 (144)
.++|..+|++..+.+ .+...+..|-..|.+. | +.++|..++++..+..
T Consensus 145 ~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 145 DVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999998762 2344566666666542 3 8999999999876543
No 172
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.93 E-value=0.00022 Score=58.52 Aligned_cols=105 Identities=15% Similarity=0.111 Sum_probs=59.1
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
+|.+.|++++|.+.++..++.. ++....+-+..+|++.+++++..... + .|+...|..+-..|-..|++++
T Consensus 1143 ~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1143 AANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHH
Confidence 4444555555555555444332 22222223555555555444333221 1 2444555556666666666777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
|..+|... ..|..+..+|.+.|++++|.+.+++-
T Consensus 1214 A~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1214 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 76666663 37778888888888888888888755
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.91 E-value=0.0004 Score=50.63 Aligned_cols=100 Identities=11% Similarity=-0.073 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD--------------YNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
....|..+-..+.+.|++++|...|++..+..-... ...|..+-.+|.+.|++++|...+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456788889999999999999999999886422111 588999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 95 GHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
. +.+...|..+-.+|.+.|++++|...|++..+.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 346778888999999999999999999997653
No 174
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.88 E-value=0.0005 Score=37.75 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIF 108 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 108 (144)
+...+..+-..+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+-.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45667777888888888888888888877643 2356778888888888888888888888887642 224455555554
Q ss_pred HHhc
Q 045403 109 HLGK 112 (144)
Q Consensus 109 ~~~~ 112 (144)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=0.00054 Score=48.66 Aligned_cols=99 Identities=8% Similarity=-0.035 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--------------CCC-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDEL--------------AIS-PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
...+..+-..+.+.|++++|...|++..+. ... .+..+|..+-.+|.+.|++++|...+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 345778888899999999999999988751 012 24567889999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 95 GHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
. +-+...+..+-.+|.+.|++++|.+.+++..+.
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 235778888999999999999999999987654
No 176
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.83 E-value=0.00011 Score=52.91 Aligned_cols=119 Identities=10% Similarity=-0.067 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHH-HHHHhCcHHHHHH
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN--TFHILIK-YFRKEKMYMLAYR 86 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~a~~ 86 (144)
..++|...|+......+. +..++..+...+...|++++|...|++..+....|... .+..+.. .....|+.++|..
T Consensus 315 ~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 456777777777665433 56778888899999999999999999887754332221 1222221 2345788888888
Q ss_pred HHHHHHHCC-----------------------CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 87 TMVDMHKKG-----------------------HQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 87 ~~~~m~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+++..+.. -+.+..+|..+-.+|...|++++|.+.|++..+.
T Consensus 394 ~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 394 HFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 887765432 1235668888999999999999999999986654
No 177
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.81 E-value=0.00069 Score=48.72 Aligned_cols=119 Identities=15% Similarity=0.055 Sum_probs=72.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh--------
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE-------- 78 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-------- 78 (144)
..|+.++|.+.+++.....+. +...+..+...|...|++++|...+++..+... -+..++..+-.+|...
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp -----CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHH
Confidence 346777888888887765433 667788888888888888888888888776421 2344555544444321
Q ss_pred -----------CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 79 -----------KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 79 -----------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
+..+.|...+++..+.. +.+...+..+-..|.+.|++++|.+.|++..+
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 23445555555555432 22334556666777777777777777776544
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.80 E-value=0.00054 Score=50.25 Aligned_cols=92 Identities=12% Similarity=-0.025 Sum_probs=77.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 045403 37 LCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAH 116 (144)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 116 (144)
-..+.+.|++++|...|++..+.. +-+..+|..+..+|.+.|++++|...+++..+.. +-+...+..+-.+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344567899999999999988752 2358899999999999999999999999999763 34677888999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 045403 117 SEALCLQHVKDIAK 130 (144)
Q Consensus 117 ~~a~~l~~~m~~~~ 130 (144)
++|.+.+++..+..
T Consensus 91 ~eA~~~~~~al~~~ 104 (477)
T 1wao_1 91 RAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999976643
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.79 E-value=0.001 Score=41.77 Aligned_cols=99 Identities=14% Similarity=0.014 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-----CH-----HHHHHHHHHHHHhCcHHHHHHHHHHHHHC----
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS-P-----DY-----NTFHILIKYFRKEKMYMLAYRTMVDMHKK---- 94 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-----~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 94 (144)
...+......+.+.|++++|...|++..+..-. | +. ..|+.+-.++.+.|++++|...+++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345566777788999999999999998764221 1 23 38999999999999999999999999864
Q ss_pred -CCCCC-HHHH----HHHHHHHhccCChHHHHHHHHHhhh
Q 045403 95 -GHQPE-EELC----SSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 95 -~~~~~-~~~~----~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+.|+ ...| .-.-.++...|++++|...|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 22565 4467 7788899999999999999998543
No 180
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00014 Score=41.62 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=49.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (144)
..+.+.|++++|.+.|++..+..+. +...|..+..++...|++++|...+++..+.
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3567889999999999999876444 7888999999999999999999999998874
No 181
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.00067 Score=37.24 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=57.8
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 78 (144)
..+.+.|++++|.+.|++..+.... +...+..+..++.+.|++++|...+++..+... -+...+..+-..+...
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhc
Confidence 3567889999999999999876443 678899999999999999999999999887532 3455666665555443
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00073 Score=48.03 Aligned_cols=128 Identities=12% Similarity=-0.020 Sum_probs=92.8
Q ss_pred hhhhhccCCHHHHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCC-HHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAK-YDKYDV----VLLNSMLCAYCRTGDMESVIHVMRKLDE----LAISPD-YNTFHIL 71 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~-~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~l 71 (144)
...|.+.|++++|.+.+++..+. +..++. .+.+.+-..+...|+++++..++..... .+..+. ..++..+
T Consensus 62 ~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 62 GQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 35788999999999999987653 111122 2333344444556899999999988753 233333 4578889
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHKK--GH--QP-EEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~~--~~--~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
...|...|++++|..++++.... +. .+ ...++..+...|...|++++|..++++...-
T Consensus 142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999999988642 11 22 2457888999999999999999999876543
No 183
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.74 E-value=0.00062 Score=52.23 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=80.0
Q ss_pred hhccCCHHHHHHHHHHHHhcCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-C-C
Q 045403 5 FCRGGCFEEAKQLARDFEAKYD---------KY------------DVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-A-I 61 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~---------~p------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~ 61 (144)
.-+.|++++|.++|+.+.+... .| ...+|...++...+.|..+.|..+|.+..+. + .
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~ 467 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV 467 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Confidence 3456888888888888775310 13 2346777788777788888888888888765 2 2
Q ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 62 SPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 62 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+......+.+.-. ..++.+.|.++|+...+. +.-+...+...++.....|+.++|..+|++....
T Consensus 468 ~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 468 TPDIYLENAYIEYH-ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp CTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 22222222222211 134578888888888764 3345566667777777788888888888876643
No 184
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.74 E-value=0.00099 Score=51.10 Aligned_cols=125 Identities=10% Similarity=-0.015 Sum_probs=94.2
Q ss_pred hccCCHHHHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH
Q 045403 6 CRGGCFEEAKQLARDFEAK-YD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML 83 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~-~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 83 (144)
.+.|.++.|.++|....+. +. .+......+.+.... .++.+.|..+|+...+. .+-+...|...++.....|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 4568899999999999875 22 233333333333221 34589999999998876 44567778888998888999999
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCC
Q 045403 84 AYRTMVDMHKKGHQP--EEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDR 132 (144)
Q Consensus 84 a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~ 132 (144)
|..+|++..+....+ ....|...+..-.+.|+.+.+.++.+++.+..+.
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999998654322 3457888888888999999999999999876544
No 185
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.72 E-value=0.00099 Score=54.85 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLG 111 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 111 (144)
.|..+...+.+.|++++|.+.+++. -+..+|..+-.+|...|+++.|..+... +..+...+..++..|.
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQ 1291 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHH
Confidence 4444444444444444444444433 2223444333333333333333332222 2335556667777788
Q ss_pred ccCChHHHHHHHHHhh
Q 045403 112 KMRAHSEALCLQHVKD 127 (144)
Q Consensus 112 ~~g~~~~a~~l~~~m~ 127 (144)
+.|.+++|..+++.-.
T Consensus 1292 ~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAAL 1307 (1630)
T ss_pred HcCCHHHHHHHHHHHh
Confidence 8888888888886643
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.69 E-value=0.00025 Score=42.87 Aligned_cols=99 Identities=10% Similarity=-0.047 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHC----CCCC-C
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-SPD----YNTFHILIKYFRKEKMYMLAYRTMVDMHKK----GHQP-E 99 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~ 99 (144)
..++..+-..+...|++++|...+++..+..- .++ ..++..+...+...|++++|...+++..+. +-.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45778888899999999999999988765311 122 146888889999999999999999987642 1111 1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 100 EELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 100 ~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
...+..+..++...|++++|.+.+++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44677788889999999999999998654
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=0.0012 Score=38.19 Aligned_cols=79 Identities=8% Similarity=-0.101 Sum_probs=65.1
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 48 SVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 48 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
++...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..+|.+.|++++|...+++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777776542 2467889999999999999999999999998753 3457788899999999999999999999865
Q ss_pred h
Q 045403 128 I 128 (144)
Q Consensus 128 ~ 128 (144)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.68 E-value=0.00036 Score=48.84 Aligned_cols=96 Identities=7% Similarity=-0.165 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH------------------HHHHHHHHHHHhCcHHHHHHHHHHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN------------------TFHILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------------------~~~~li~~~~~~g~~~~a~~~~~~m 91 (144)
...+..+-..+.+.|++++|...|++..+. .|+.. .|..+-.+|.+.|++++|...+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455777888889999999999999997763 35543 7888999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 92 HKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+.. +.+...|..+-.+|...|++++|...|++...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8753 34677889999999999999999999998764
No 189
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.65 E-value=0.00095 Score=46.33 Aligned_cols=124 Identities=6% Similarity=-0.109 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc------
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDME--SVIHVMRKLDELAISPDYNTFHILIKYFRKEKM------ 80 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------ 80 (144)
+++++++++++.+.+..++ |-.+|+-..-.+.+.|.++ ++.+.++++.+... -|...|+---....+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 4555555555555544333 4555555544444444444 55555555554332 344444444444433333
Q ss_pred HHHHHHHHHHHHHC-----------------------------------C--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 045403 81 YMLAYRTMVDMHKK-----------------------------------G--HQPEEELCSSLIFHLGKMRAHSEALCLQ 123 (144)
Q Consensus 81 ~~~a~~~~~~m~~~-----------------------------------~--~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 123 (144)
++++.+.+++.... + -..+......+.++|.+.|+.++|.+++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 44444444333321 1 1236677888889999999999999999
Q ss_pred HHhhhcCCCCc
Q 045403 124 HVKDIAKDRCA 134 (144)
Q Consensus 124 ~~m~~~~~~~~ 134 (144)
+.+.+.-+|..
T Consensus 282 ~~l~~~~Dpir 292 (306)
T 3dra_A 282 DLLKSKYNPIR 292 (306)
T ss_dssp HHHHHTTCGGG
T ss_pred HHHHhccChHH
Confidence 99875444443
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.0013 Score=46.73 Aligned_cols=126 Identities=10% Similarity=-0.020 Sum_probs=90.8
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYD----------------VVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AISPDYN 66 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ 66 (144)
.+.+.|++++|.+.|.+..+...... ...+..+...|...|++++|.+.+....+. +-.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 46788999999999999887533211 134788999999999999999999988653 1113322
Q ss_pred H----HHHHHHHHHHhCcHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 67 T----FHILIKYFRKEKMYMLAYRTMVDMHK----KGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 67 ~----~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+ .+.+-..+...|+.+.+..++.+... .+..+. ..++..+...|...|++++|..+++++...
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 2 22333334456889999988887753 333333 457778999999999999999999986543
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.64 E-value=0.00037 Score=43.68 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=79.2
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhCCCCC-CHHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDM----------ESVIHVMRKLDELAISP-DYNTFHILIK 73 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~g~~p-~~~~~~~li~ 73 (144)
..+.+++++|.+.++...+..+. +...|+.+-.++.+.+++ ++|...|++..+. .| +..+|..+-.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 34667899999999999887655 888999888888887764 5999999998874 44 5678889999
Q ss_pred HHHHhC-----------cHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 74 YFRKEK-----------MYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 74 ~~~~~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
+|...| ++++|...|++..+. .|+...|...+..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 998774 899999999999874 5776666555554
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.61 E-value=0.00095 Score=37.98 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 045403 28 YDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 28 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 93 (144)
-+...+..+-.++.+.|++++|...|++..+... -+...|..+-.+|...|++++|...+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3667788888889999999999999988876532 3456788888889999999999988888764
No 193
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.51 E-value=0.0056 Score=44.42 Aligned_cols=16 Identities=6% Similarity=-0.261 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHhcC
Q 045403 10 CFEEAKQLARDFEAKY 25 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~ 25 (144)
+.++|++.|+...+.|
T Consensus 194 ~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHCC
Confidence 4445555554444443
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.47 E-value=0.0018 Score=36.30 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=23.5
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVV-LLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
.+.|++++|.+.|++..+..+. +.. .|..+-.++...|++++|...|++..+
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555544443222 333 444444444444455555544444443
No 195
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.47 E-value=0.00095 Score=48.53 Aligned_cols=82 Identities=5% Similarity=-0.115 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHhhh---CCCCCC----HHHHHHHHHHHHHhCcHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHH
Q 045403 44 GDMESVIHVMRKLDE---LAISPD----YNTFHILIKYFRKEKMYMLAYRTMVDMHK-----KG-HQPE-EELCSSLIFH 109 (144)
Q Consensus 44 ~~~~~a~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~~~-~~~~~~l~~~ 109 (144)
|++++|+.++++..+ .-+.|+ ..+++.+...|...|++++|..++++..+ .| -.|+ ..+++.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455666666655432 112222 23456666666666666666666665542 12 1222 3345566666
Q ss_pred HhccCChHHHHHHHHH
Q 045403 110 LGKMRAHSEALCLQHV 125 (144)
Q Consensus 110 ~~~~g~~~~a~~l~~~ 125 (144)
|...|++++|..++++
T Consensus 392 ~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 392 YMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHH
Confidence 6666666666666665
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.46 E-value=0.0015 Score=37.18 Aligned_cols=65 Identities=11% Similarity=-0.125 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 63 PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 63 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
-+...+..+-..|...|++++|...|++..+.. +-+...|..+-.+|.+.|++++|.+.+++...
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 367788999999999999999999999998754 23466888899999999999999999997653
No 197
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.44 E-value=0.0024 Score=43.83 Aligned_cols=102 Identities=7% Similarity=-0.077 Sum_probs=77.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHhC
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD--YNTFHILIKYFRKEK 79 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g 79 (144)
.+.+.+++++|+..|+...... .|. ...+..+-.++...|++++|+..|++.......|. .......-.++.+.|
T Consensus 144 l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence 5678899999999998554321 111 34678889999999999999999999875433254 346677778899999
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIF 108 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 108 (144)
+.++|..+|+++... .|+...+.+|.+
T Consensus 223 r~deA~~~l~~a~a~--~P~~~~~~aL~~ 249 (282)
T 4f3v_A 223 NESAAVALLEWLQTT--HPEPKVAAALKD 249 (282)
T ss_dssp CHHHHHHHHHHHHHH--SCCHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhc--CCcHHHHHHHhC
Confidence 999999999999975 355555555543
No 198
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.43 E-value=0.0012 Score=47.90 Aligned_cols=59 Identities=5% Similarity=-0.179 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 67 TFHILIKYFRKEKMYMLAYRTMVDMHK-----KG-HQPE-EELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
+++.+...|...|++++|..++++... .| -.|+ ..+++.|-..|...|++++|..++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345555555555555555555554432 11 1111 22344455555555555555555554
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.42 E-value=0.0014 Score=47.70 Aligned_cols=87 Identities=9% Similarity=0.015 Sum_probs=69.4
Q ss_pred ccCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CCCH-HHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAK-----YD-KYD-VVLLNSMLCAYCRTGDMESVIHVMRKLDEL-----AI-SPDY-NTFHILI 72 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~-~~~~~li 72 (144)
+.|++++|..++++..+. |. .|+ ..+++.|..+|...|++++|..++++..+- |- .|+. .+++.+-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999987653 22 123 378999999999999999999999997632 32 3433 3589999
Q ss_pred HHHHHhCcHHHHHHHHHHHHH
Q 045403 73 KYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~m~~ 93 (144)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998864
No 200
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0088 Score=38.11 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=41.9
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
..+.|+++.|.++.+++. +...|..+-+.....|+++-|+.+|.+...
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 356899999999988762 788999999999999999999999998764
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.36 E-value=0.0028 Score=46.03 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=72.5
Q ss_pred hhhhccCCHHHHHHHHHHHHhcC---CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CCCH-HHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKY---DK----YDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-----AI-SPDY-NTF 68 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~---~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~-~~~ 68 (144)
.-+.+.|++++|..++++..+.. .. ....+++.+..+|...|++++|+.++++..+- |- .|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34567899999999999987541 11 23478999999999999999999999987632 22 2333 358
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 69 HILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
+.+-..|...|++++|..++++..+-
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999988753
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.35 E-value=0.0025 Score=47.03 Aligned_cols=89 Identities=10% Similarity=-0.070 Sum_probs=68.9
Q ss_pred HHHhcCCHHHHHHHHHHhhhC---CCCCC----HHHHHHHHHHHHHhCcHHHHHHHHHHHHH-----CCC-CC-CHHHHH
Q 045403 39 AYCRTGDMESVIHVMRKLDEL---AISPD----YNTFHILIKYFRKEKMYMLAYRTMVDMHK-----KGH-QP-EEELCS 104 (144)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~~-~~~~~~ 104 (144)
.+...|++++|+.++++..+. -+.|+ ..+++.+...|...|++++|..++++..+ .|- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887642 22232 34689999999999999999999988763 221 23 345788
Q ss_pred HHHHHHhccCChHHHHHHHHHhh
Q 045403 105 SLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 105 ~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
.|...|...|++++|..++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999744
No 203
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.33 E-value=0.0029 Score=48.58 Aligned_cols=100 Identities=11% Similarity=-0.057 Sum_probs=55.1
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
+.|++++|.++.+.+ .+...|..+-..+.+.++++.|.++|.++.. |..+...+...|+.+...+
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 345555555553322 3567777777777777777777777777654 2334444444555554444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 87 TMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 87 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+-+.....| -++....+|.+.|++++|.+++.++.
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 444443333 12333444555666666666665443
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.0012 Score=36.97 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 36 MLCAYCRTGDMESVIHVMRKLDELAISPDYN-TFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
....+...|++++|...|++..+..- .+.. .+..+-.++...|++++|...+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34567788999999999999887532 3556 88889999999999999999999998753
No 205
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.25 E-value=0.008 Score=43.62 Aligned_cols=109 Identities=6% Similarity=-0.001 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh----CcHHH
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG---DMESVIHVMRKLDELAISPDYNTFHILIKYFRKE----KMYML 83 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~ 83 (144)
.+++..+++.... .+...+..+-..|...| +.++|...|.+..+.|. ++...+..+-..|... ++.++
T Consensus 161 ~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 161 LDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 3444444444432 23337888888888888 88999999999888775 5555555566666544 68888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCChHHHHHHHHHhhh
Q 045403 84 AYRTMVDMHKKGHQPEEELCSSLIFH-L--GKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~l~~~m~~ 128 (144)
|..+|++.. .| +...+..+-.. + ...++.++|.+++++..+
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 888888876 33 33344444444 3 457888888888887654
No 206
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.21 E-value=0.025 Score=39.15 Aligned_cols=116 Identities=8% Similarity=-0.044 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc---CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAY----CRT---GDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
++++++++++.+....+. +..+|+---..+ ... ++++++..+++++.+..- -|..+|+.---...+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccC
Confidence 566666666665554443 444555444444 333 455666666666654322 35555665555555556555
Q ss_pred --HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------hHHHHHHHHHhhh
Q 045403 83 --LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRA------HSEALCLQHVKDI 128 (144)
Q Consensus 83 --~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~------~~~a~~l~~~m~~ 128 (144)
++.+.++++.+.. .-+...|+--...+.+.|. ++++++.+++...
T Consensus 162 ~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 162 DAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 5666666665443 2344455444444444443 5556655555443
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.13 E-value=0.02 Score=43.03 Aligned_cols=128 Identities=7% Similarity=-0.052 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC-cHHHHHHH
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG--DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK-MYMLAYRT 87 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~ 87 (144)
++++.+.++.+.+..++ +..+|+---.++.+.+ +++++.+.++++.+... -|..+|+---....+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 89999999999987666 8899999988899999 77999999999998654 58899999988888999 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcc--------------CChHHHHHHHHHhhhcC--CCCcHHHHHHh
Q 045403 88 MVDMHKKGHQPEEELCSSLIFHLGKM--------------RAHSEALCLQHVKDIAK--DRCAMPFMRKF 141 (144)
Q Consensus 88 ~~~m~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~l~~~m~~~~--~~~~~~~~~~~ 141 (144)
++++.+.. .-+...|+-....+.+. +.++++.+.+++...-. +...|.+...+
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 99998654 34666777655555442 55788988888765543 34455444433
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.06 E-value=0.0052 Score=38.18 Aligned_cols=91 Identities=12% Similarity=0.030 Sum_probs=64.7
Q ss_pred hhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHHhC
Q 045403 5 FCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG---DMESVIHVMRKLDELAISP--DYNTFHILIKYFRKEK 79 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g 79 (144)
.........+.+-|++..+.|. ++..+.-.+-.++++.+ +.+++..++++..+.. .| +...+--+--+|.+.|
T Consensus 8 ~l~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHcc
Confidence 3344556777777777766555 57777777888888877 6668999998888764 24 2344445555668999
Q ss_pred cHHHHHHHHHHHHHCCCCCC
Q 045403 80 MYMLAYRTMVDMHKKGHQPE 99 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~ 99 (144)
++++|.+.++.+.+. .|+
T Consensus 86 ~Y~~A~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 86 EYEKALKYVRGLLQT--EPQ 103 (152)
T ss_dssp CHHHHHHHHHHHHHH--CTT
T ss_pred CHHHHHHHHHHHHhc--CCC
Confidence 999999999998864 454
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.00 E-value=0.05 Score=38.76 Aligned_cols=127 Identities=8% Similarity=-0.151 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cC-CHHHHHHHHHHhh---h-CCCCCCHHHHHHHHHHHHHhC
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCR----TG-DMESVIHVMRKLD---E-LAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~-~~~~a~~~~~~m~---~-~g~~p~~~~~~~li~~~~~~g 79 (144)
.+..+|..+|++..+..+. ....|..+--++.. .+ .......+-..+. . ..-+.+..+|.++-..+...|
T Consensus 213 ~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 3458899999999886443 34444433333321 11 1122222211221 1 123568888988888888889
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHHHH
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPFMR 139 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~ 139 (144)
++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++... -.|..+++.+
T Consensus 292 d~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr-L~P~~~t~~~ 348 (372)
T 3ly7_A 292 KTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN-LRPGANTLYW 348 (372)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSCSHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCcChHHH
Confidence 9999999999999875 7888888888889999999999999998664 3444444433
No 210
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.99 E-value=0.023 Score=41.83 Aligned_cols=113 Identities=9% Similarity=-0.064 Sum_probs=80.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLN--SMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 84 (144)
+.+.++.|.++|+..... ..+...|- +.+.... .++.+.|..+|+...+.- +-+...|...++...+.|+.+.|
T Consensus 298 r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 298 KKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 456789999999988221 22333343 3333322 236899999999887753 22345567778878889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
..+|++.. .....|...+..-.+.|+.+.+.+++++...
T Consensus 374 R~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 374 RALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999973 2567888888877788999999998888654
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.90 E-value=0.062 Score=40.36 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh
Q 045403 9 GCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD----------MESVIHVMRKLDELAISPDYNTFHILIKYFRKE 78 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 78 (144)
..-++|++.++++....+. +...|+.--.++...++ ++++.+.++++.+..- -+..+|+.--..+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3446778999998877555 67788877777777766 9999999999987543 5778899999999999
Q ss_pred C--cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHhhhc
Q 045403 79 K--MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMR-AHSEALCLQHVKDIA 129 (144)
Q Consensus 79 g--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~l~~~m~~~ 129 (144)
+ +++++...++++.+.. .-+.+.|+----+..+.| ..+++.+.++++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 9 7799999999999764 347778887777777788 889999999887654
No 212
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.86 E-value=0.065 Score=37.88 Aligned_cols=116 Identities=12% Similarity=-0.001 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH-----
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRT-G-DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM----- 82 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~----- 82 (144)
++++++++++.+....++ +..+|+-.-..+... + +++++.++++++.+... -|..+|+----...+.|..+
T Consensus 104 ~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp CHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchh
Confidence 466666666666655444 556666655555554 4 56666666666665422 35566665555555555444
Q ss_pred ---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-------hHHHHHHHHHhhh
Q 045403 83 ---LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRA-------HSEALCLQHVKDI 128 (144)
Q Consensus 83 ---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~l~~~m~~ 128 (144)
++.+.++++.+.. .-+...|+-....+.+.+. ++++++.+++...
T Consensus 182 ~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 6666666666543 2355566655555555554 4566666665443
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.70 E-value=0.043 Score=33.66 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=55.1
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 86 (144)
++|++..+...+-.+. -+..-.+..++.....|.-|+..+++.++.. +.+|+....-.+-.+|.+.|+..++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 4556666666655442 2455567777777777777777777777533 234666777777777777777777777
Q ss_pred HHHHHHHCCC
Q 045403 87 TMVDMHKKGH 96 (144)
Q Consensus 87 ~~~~m~~~~~ 96 (144)
++.+.-+.|+
T Consensus 147 Ll~~AC~kG~ 156 (172)
T 1wy6_A 147 LLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhhh
Confidence 7777766664
No 214
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.47 E-value=0.12 Score=36.15 Aligned_cols=123 Identities=7% Similarity=0.003 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh-----------
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVIHVMRKLDELAISPDYNTFHILIKYFRKE----------- 78 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------- 78 (144)
++++..+++.+.+..+. |-..|+-....+...|. ++++.+.+.++.+..+ -|...|+-.-..+.+.
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccc
Confidence 55666666666555433 55556655555555555 4566666666655433 4555555555554444
Q ss_pred ---CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------CChHHHHHHHHHhhhcCCCCcHH
Q 045403 79 ---KMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKM-----------RAHSEALCLQHVKDIAKDRCAMP 136 (144)
Q Consensus 79 ---g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~l~~~m~~~~~~~~~~ 136 (144)
+.++++.+.+.+..... +-|...|+-+--.+.+. +.++++.+.++++.+..+...|.
T Consensus 204 ~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~ 274 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchH
Confidence 34555555555555432 22444454332222222 23555556666555444444443
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.44 E-value=0.024 Score=35.46 Aligned_cols=87 Identities=7% Similarity=-0.132 Sum_probs=67.8
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045403 41 CRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY----------MLAYRTMVDMHKKGHQPEEELCSSLIFHL 110 (144)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 110 (144)
.+.+.+++|...++...+..- -+...|..+-.++...+++ ++|...|++..+.. +-+...|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 455678999999999887532 4777888888888887764 59999999998753 22566888899999
Q ss_pred hccC-----------ChHHHHHHHHHhhhc
Q 045403 111 GKMR-----------AHSEALCLQHVKDIA 129 (144)
Q Consensus 111 ~~~g-----------~~~~a~~l~~~m~~~ 129 (144)
.+.| ++++|.+.|++..+-
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 8764 899999999987653
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.36 E-value=0.07 Score=32.04 Aligned_cols=87 Identities=14% Similarity=-0.114 Sum_probs=72.5
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH--
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVIHVMRKLDELAISPDYNTFHILIKYFRK-- 77 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 77 (144)
.|.+.+.+++|.+.|++..+.| +...+..+-..|.. .+++++|...|++..+.| +...+..+-..|..
T Consensus 34 ~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 34 VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 3455677888999999988753 66788888888887 789999999999998864 56778888888888
Q ss_pred --hCcHHHHHHHHHHHHHCCC
Q 045403 78 --EKMYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 78 --~g~~~~a~~~~~~m~~~~~ 96 (144)
.++.++|..++++-.+.|.
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHHHHHHHHHCCC
Confidence 8899999999999988763
No 217
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.29 E-value=0.2 Score=36.89 Aligned_cols=20 Identities=20% Similarity=0.017 Sum_probs=14.7
Q ss_pred hhccCCHHHHHHHHHHHHhc
Q 045403 5 FCRGGCFEEAKQLARDFEAK 24 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~ 24 (144)
+.+.|++++|..+++.....
T Consensus 223 ~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC
Confidence 34567888888888877766
No 218
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.23 E-value=0.18 Score=35.39 Aligned_cols=128 Identities=7% Similarity=-0.046 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc-HHHHHHH
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG--DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM-YMLAYRT 87 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~ 87 (144)
+++++.+++.+....+. +..+|+---..+...+ .++++..+++++.+... -|..+|+----.....|. .+++.+.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 67899999998877655 8889998888888877 48999999999988644 688899998888888898 6899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcc--------------CChHHHHHHHHHhhhc--CCCCcHHHHHHh
Q 045403 88 MVDMHKKGHQPEEELCSSLIFHLGKM--------------RAHSEALCLQHVKDIA--KDRCAMPFMRKF 141 (144)
Q Consensus 88 ~~~m~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~l~~~m~~~--~~~~~~~~~~~~ 141 (144)
++++.+.. .-|...|+-....+.+. +.++++.+.+++.... ++..+|++...+
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 236 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99998764 34666666554444433 4578888888886654 344455544443
No 219
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.23 E-value=0.18 Score=35.56 Aligned_cols=121 Identities=7% Similarity=0.009 Sum_probs=92.5
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh-C-cHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVIHVMRKLDELAISPDYNTFHILIKYFRKE-K-MYM 82 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~ 82 (144)
.+.+..++|+++++.+....+. +...||..-..+...+ .+++++.+++.+..... -+..+|+.--..+... + +.+
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChH
Confidence 3445667899999999887666 7788998888888888 59999999999987543 5777898888888877 7 889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH--------HHHHHHHHhhhc
Q 045403 83 LAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHS--------EALCLQHVKDIA 129 (144)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~l~~~m~~~ 129 (144)
+++.+++.+.+.. .-+...|+--.-.+.+.|..+ ++++.++++.+.
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 9999999998653 346667765554544444555 888888887654
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.10 E-value=0.12 Score=32.10 Aligned_cols=85 Identities=11% Similarity=-0.019 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHhccCChHHH
Q 045403 45 DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK---MYMLAYRTMVDMHKKGHQP-E-EELCSSLIFHLGKMRAHSEA 119 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a 119 (144)
....+.+-|.+-.+.|. ++..+.-.+-.++++++ +.+++..++++..+.. .| + ....=.+--+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 35567777777766665 78888888888888888 7779999999998764 24 1 22222355567999999999
Q ss_pred HHHHHHhhhcCC
Q 045403 120 LCLQHVKDIAKD 131 (144)
Q Consensus 120 ~~l~~~m~~~~~ 131 (144)
.+.++.+.+-++
T Consensus 91 ~~y~~~lL~ieP 102 (152)
T 1pc2_A 91 LKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCC
Confidence 999999876443
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.07 E-value=0.082 Score=30.09 Aligned_cols=69 Identities=9% Similarity=-0.121 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCC
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELA------ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE 99 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 99 (144)
+...+-.|...+.+.+++..|...|+...+.- -.+....+..+..++.+.|++++|...+++..+. .|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 45556678888888899999999888876531 1245667888888888999999999988888764 454
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.80 E-value=0.12 Score=36.80 Aligned_cols=76 Identities=9% Similarity=0.074 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 27 KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
+.+..+|..+-..+...|++++|...+++....+ |+...|..+-..+...|+.++|.+.+++.... .|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 5688888888888888899999999999999865 88888888889999999999999999988864 5777776543
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.79 E-value=0.11 Score=29.19 Aligned_cols=67 Identities=9% Similarity=-0.010 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 27 KYDVVLLNSMLCAYCRTGD---MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
+.|...+..+-.++...++ .++|..++++..+..- -+..+...+-..+.+.|++++|...|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4466667777777654443 5788888877766321 34556666667777888888888888888764
No 224
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.76 E-value=0.049 Score=38.91 Aligned_cols=79 Identities=15% Similarity=-0.007 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK-----KGHQPEEELCSSL 106 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~l 106 (144)
+...++.++...|+++++...+....... +.++..|..++.++...|+..+|.+.|+++.+ .|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45567888889999999999998887642 36889999999999999999999999998864 5999988876555
Q ss_pred HHHHh
Q 045403 107 IFHLG 111 (144)
Q Consensus 107 ~~~~~ 111 (144)
-....
T Consensus 252 ~~il~ 256 (388)
T 2ff4_A 252 ERILR 256 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 44443
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.68 E-value=0.13 Score=29.26 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=29.8
Q ss_pred hhccCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 045403 5 FCRGGCFEEAKQLARDFEAKY------DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE 58 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (144)
+.+.|+++.|...|++..+.- ..+....+..+..++.+.|++++|...+++..+
T Consensus 15 ~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 15 AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 445566666666666554321 122445555666666666666666666666555
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.58 E-value=0.26 Score=34.01 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHh-C
Q 045403 9 GCFEEAKQLARDFEAKYDKYD---VVLLNSMLCAYCRT-----GDMESVIHVMRKLDELAISPDYNTFHILIKYFRKE-K 79 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g 79 (144)
+....|...+++..+. .|+ ...|.++...|.+. |+.++|...|++..+-+-.-+..++...-..++.. |
T Consensus 177 ~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 3456777777777664 555 67899999999984 89999999999988743222367777777888774 8
Q ss_pred cHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 045403 80 MYMLAYRTMVDMHKKGHQ--PEEELCSS 105 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~--~~~~~~~~ 105 (144)
+.+++.+.+++....... |+....+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 999999999999887655 66444433
No 227
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.54 E-value=0.16 Score=29.31 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=55.7
Q ss_pred HHHHHHHHHh-cC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 33 LNSMLCAYCR-TG-DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 33 ~~~li~~~~~-~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
|++--..|.. .. +..++.+-++.+....+.|+.....+.+++|.+.+++..|.++++-.+.. +.+...+|..++.-
T Consensus 11 F~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 11 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 3333334443 34 67888888999888888899999999999999999999999999988732 22334567666543
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.17 E-value=0.56 Score=33.44 Aligned_cols=63 Identities=13% Similarity=-0.064 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 66 NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+...++..+...|+.+++......+... .+.+...|..+|.++.+.|+..+|++.|++.+..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566788888999999999988888754 2568889999999999999999999999986653
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.66 Score=36.23 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=78.4
Q ss_pred ccCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhC------CCCC-CHH----------H
Q 045403 7 RGGC-FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVIHVMRKLDEL------AISP-DYN----------T 67 (144)
Q Consensus 7 ~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~------g~~p-~~~----------~ 67 (144)
-.|+ .+.|..+|+.+.+..+..+.....++|..+...+ +--+|..++.+..+. ...+ +.. .
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3444 5789999999988754434444445555554443 233455555554321 1222 111 1
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 68 FHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE-EELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
.+.=.+-+...|+++.|+.+-++.... .|+ =.+|..|..+|.+.|+++.|+-.+..++
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122234466789999999999998763 565 6699999999999999999999999886
No 230
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.72 E-value=0.38 Score=29.29 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045403 45 DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIF 108 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 108 (144)
+..++.+-++.+....+.|+.....+.+++|.+.+|+..|.++++-.+.. +.+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45566666666666666677777777777777777777777777776622 2233445555543
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.60 E-value=0.45 Score=29.93 Aligned_cols=115 Identities=11% Similarity=0.007 Sum_probs=67.5
Q ss_pred CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCH-------HHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 25 YDKYDVVLLN--SMLCAYCRTGDMESVIHVMRKLDEL-AISPDY-------NTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 25 ~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
|..|-...|+ .=++.+...+.++.|.-+.+.+... +..|+. .+..-+.+++...+++.+|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444443333 3355567777777777777775532 223332 14455666777788888888877774311
Q ss_pred --C----------------------CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCCCCcHHHHH
Q 045403 95 --G----------------------HQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKDRCAMPFMR 139 (144)
Q Consensus 95 --~----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~ 139 (144)
- ...+...-=-+-.||.+.|+.++|..+++.++...+....+.+.
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~L 161 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLL 161 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHH
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHH
Confidence 0 11111222237788999999999999999998876666665543
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.56 E-value=0.21 Score=31.08 Aligned_cols=100 Identities=9% Similarity=-0.114 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHhhhCCCCCCHH-HHHHHHHH------HHHhCcHHHHHHHHHHHHH
Q 045403 27 KYDVVLLNSMLCAYCRTGDM------ESVIHVMRKLDELAISPDYN-TFHILIKY------FRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~-~~~~li~~------~~~~g~~~~a~~~~~~m~~ 93 (144)
+-|..+|=..+...-+.|+. ++..++|++.... ++|+.. .|..-|.. +...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44667777777777777777 7888888877653 555432 11111111 2335788899999999976
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 94 KGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+-+. ...|-....--.+.|++++|.+++.+-..
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 53333 66776666667789999999999998664
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.14 E-value=0.22 Score=38.22 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=53.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHhc
Q 045403 40 YCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG-------HQPEEELCSSLIFHLGK 112 (144)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~l~~~~~~ 112 (144)
....|++++|.++.+.+ .+...|..+-..+.+.++++.|.++|.++.... ..-+......+.....+
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666664433 567899999999999999999999999875211 01233444555666666
Q ss_pred cCChHHHHHHHHH
Q 045403 113 MRAHSEALCLQHV 125 (144)
Q Consensus 113 ~g~~~~a~~l~~~ 125 (144)
.|++..|..++-+
T Consensus 736 ~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 736 TGKFNLAFNAYWI 748 (814)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCchHHHHHHHHH
Confidence 7777777766653
No 234
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.86 E-value=0.44 Score=26.61 Aligned_cols=48 Identities=10% Similarity=-0.072 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (144)
.++|..++++..+..+. ++.....+-..+.+.|++++|...|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46666666666655433 5555556666666666666666666666553
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.65 E-value=0.72 Score=28.37 Aligned_cols=119 Identities=9% Similarity=0.081 Sum_probs=84.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CC----------------CCCHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AI----------------SPDYNTFH 69 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~----------------~p~~~~~~ 69 (144)
-.|.+++..++..+..+ +.+..-||=.|.-....-+=+-..++++..-+. .+ ..+...+.
T Consensus 19 ldG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd 95 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 95 (172)
T ss_dssp HTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHH
Confidence 35888888888888775 346666776666666655555555555554432 00 23344566
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 70 ILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..++.....|.-|.-.++..++.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 677778888888888888888654 34788889999999999999999999999986653
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.95 E-value=1.5 Score=30.21 Aligned_cols=101 Identities=5% Similarity=-0.024 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHH-HHhc--CC------HHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHH-----hCcHHHHHHHHHH
Q 045403 28 YDVVLLNSMLCA-YCRT--GD------MESVIHVMRKLDELAISPD---YNTFHILIKYFRK-----EKMYMLAYRTMVD 90 (144)
Q Consensus 28 p~~~~~~~li~~-~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~ 90 (144)
+..-.|..++.+ +... |. ...|...+++..+ +.|+ -..|..+...|.. -|+.++|.+.|++
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer 229 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence 344556655554 3332 32 4566666666665 3565 5689999999999 4999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHhhhcC
Q 045403 91 MHKKGHQPEEELCSSLIFHLGK-MRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 91 m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~l~~~m~~~~ 130 (144)
-.+.+-.-+..++......+++ .|+.+++.+.+++.....
T Consensus 230 AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 230 LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 9975421136677778888888 499999999999976543
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.39 E-value=1.1 Score=27.87 Aligned_cols=102 Identities=5% Similarity=-0.123 Sum_probs=68.9
Q ss_pred hhccCCH------HHHHHHHHHHHhcCCCCCH-HHHHHHHHHH------HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 045403 5 FCRGGCF------EEAKQLARDFEAKYDKYDV-VLLNSMLCAY------CRTGDMESVIHVMRKLDELAISPDYNTFHIL 71 (144)
Q Consensus 5 ~~~~g~~------~~a~~~~~~m~~~~~~p~~-~~~~~li~~~------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 71 (144)
.-+.|+. ++..++|++.... ++|+. ..|-.-|..+ ...++.++|.++|+.+++.+=+. ...|-..
T Consensus 23 lE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~ 100 (161)
T 4h7y_A 23 LEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKF-AFVHISF 100 (161)
T ss_dssp HHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHH
T ss_pred HHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHH
Confidence 3445777 8888888887764 44433 2222333222 23478899999999998763334 7777777
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFH 109 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 109 (144)
..--.+.|+++.|.+++.+-...+.+| .....+.+.-
T Consensus 101 AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 101 AQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 777888999999999999999876544 4444444443
No 238
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.59 E-value=1.2 Score=25.69 Aligned_cols=75 Identities=15% Similarity=-0.051 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 46 MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
.++|..|-+-+...|. ...+--+-+..+...|++++|..+.+.+ +.||...|-+|-. .+.|..+++...+-+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4455555555544322 2222222223344455555555443332 3455555544332 245555555555544
Q ss_pred hhh
Q 045403 126 KDI 128 (144)
Q Consensus 126 m~~ 128 (144)
+..
T Consensus 94 la~ 96 (115)
T 2uwj_G 94 LGG 96 (115)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
No 239
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.21 E-value=1.3 Score=25.53 Aligned_cols=75 Identities=12% Similarity=-0.055 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 46 MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
.++|..|-+-+...|. ...+--+-+..+...|++++|..+.+.+ +.||...|-+|-. .+.|..+++...+-+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3455555554444322 2222222223344455555555443333 3455555544322 244555555554444
Q ss_pred hhh
Q 045403 126 KDI 128 (144)
Q Consensus 126 m~~ 128 (144)
+..
T Consensus 95 la~ 97 (116)
T 2p58_C 95 LAR 97 (116)
T ss_dssp HTT
T ss_pred HHh
Confidence 443
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.13 E-value=1.5 Score=26.17 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCC--CHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMES---VIHVMRKLDELAISP--DYNTFHILIKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 93 (144)
+..+--.+-.+++++..... ...++.+..+.+- | +....--+--++.+.|++++|.+.++.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444444444443333 5555555444321 2 112222233334455555555555555544
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.92 E-value=1.6 Score=26.07 Aligned_cols=86 Identities=9% Similarity=-0.043 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHH---HHHHHHHHHHCCCCC-CHHHHH-HHHHHHhccCChHH
Q 045403 44 GDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYML---AYRTMVDMHKKGHQP-EEELCS-SLIFHLGKMRAHSE 118 (144)
Q Consensus 44 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~-~~~~~~-~l~~~~~~~g~~~~ 118 (144)
.....+.+-|.+-...|. |+..+--.+..++.++...+. +..+++++.+.+ .| ...-+. .|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 345566667766655555 777776667777777776555 888999988754 23 223332 35667889999999
Q ss_pred HHHHHHHhhhcCC
Q 045403 119 ALCLQHVKDIAKD 131 (144)
Q Consensus 119 a~~l~~~m~~~~~ 131 (144)
|.+.++.+.+..+
T Consensus 93 A~~~~~~lL~~eP 105 (126)
T 1nzn_A 93 ALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999876544
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.48 E-value=1.6 Score=25.21 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=47.4
Q ss_pred HHHHHhC-cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 73 KYFRKEK-MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 73 ~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
+.+.+.. |.=+..+.++.+....+.|++.+..+.+++|.+.+|+.-|.++++-++..
T Consensus 17 ~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 17 TYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333444 45567788888888899999999999999999999999999999988764
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.93 E-value=3.1 Score=30.06 Aligned_cols=99 Identities=12% Similarity=-0.000 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH---CCCCCCHHH--H
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDEL--AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK---KGHQPEEEL--C 103 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~--~ 103 (144)
.+...+...|.+.|++++|.++|.++... +.+.-...+-..+..+...+++..+...+++... .+..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46777888999999999999999999864 3344456688888999999999999988888763 232333221 1
Q ss_pred HHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 104 SSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 104 ~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
..-...+...+++..|.+.|-+.-..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11222344678888888888775443
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.89 E-value=2.2 Score=24.58 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMV 89 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 89 (144)
.-++|..+-+.+...+- ...+--+-+..+..+|+|++|..+.+.+- -||...|-++-. .+.|..+.+...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45678888787776433 22332344445678899999998876654 599999988754 58899999998888
Q ss_pred HHHHCCCCCCHHHHHH
Q 045403 90 DMHKKGHQPEEELCSS 105 (144)
Q Consensus 90 ~m~~~~~~~~~~~~~~ 105 (144)
++...| .|....|..
T Consensus 93 ~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 93 GLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHTCS-SHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHH
Confidence 888766 455555544
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.52 E-value=2.3 Score=24.49 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMV 89 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 89 (144)
.-++|..+-+.+...+- ...+--+-+..+..+|+|++|..+.+.+- -||...|-++-. .+.|..+.+...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45778888887776433 22332344445678899999999887765 599999988754 57899998888888
Q ss_pred HHHHCCCCCCHHHHHH
Q 045403 90 DMHKKGHQPEEELCSS 105 (144)
Q Consensus 90 ~m~~~~~~~~~~~~~~ 105 (144)
++...| .|....|..
T Consensus 94 ~la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 94 RLARSQ-DPRIQTFVN 108 (116)
T ss_dssp HHTTCC-CHHHHHHHH
T ss_pred HHHhCC-CHHHHHHHH
Confidence 887665 455555544
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.30 E-value=5.8 Score=28.81 Aligned_cols=71 Identities=11% Similarity=-0.071 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhhhc--CCCCcHHH
Q 045403 67 TFHILIKYFRKEKMYMLAYRTMVDMHK--KGHQPE---EELCSSLIFHLGKMRAHSEALCLQHVKDIA--KDRCAMPF 137 (144)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~---~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~~ 137 (144)
....|.+.+-..|++.+|.+++.++.. .|.... ...+...+..|...+++.+|..++...... ..++++..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 345677788889999999999999863 232222 346677788899999999999998886432 34444443
No 247
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=88.28 E-value=2.3 Score=25.33 Aligned_cols=69 Identities=10% Similarity=0.274 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHCCCCCCHHH
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK--MYMLAYRTMVDMHKKGHQPEEEL 102 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~ 102 (144)
.+.+|.=|...|+.++|...++++..-.. ....+...+..+.-+.+ ..+.+..++..+.+.|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 45566666667777777777777642111 11223334444444432 23456666666666655444333
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.70 E-value=5.2 Score=28.73 Aligned_cols=126 Identities=12% Similarity=0.047 Sum_probs=86.9
Q ss_pred hhhhccCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHH------HHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAK----YDKYDVVLLNSMLCAYCRTG-DMESVIHVMRKLDELAISPDYNTF------HIL 71 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~------~~l 71 (144)
..|.+.|+.++..+++.....- +-.-.......+|+.+...+ ..+.-.++..+..+..- -+..+| .-+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~kL 105 (394)
T 3txn_A 27 ELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEARL 105 (394)
T ss_dssp HHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5678899999999998876532 11124466778899888764 45556666665554311 111233 367
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 72 IKYFRKEKMYMLAYRTMVDMHKKGHQP-----EEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
.+.|...|++.+|.+++.++.+.=-.. -..+|..-+..|...|++.++...+...+..
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 889999999999999999987531111 2335667788899999999999999876654
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.60 E-value=3.8 Score=25.95 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=60.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC-C------CCCHH--------
Q 045403 37 LCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG-H------QPEEE-------- 101 (144)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~------~~~~~-------- 101 (144)
.....+.|+++.|.++.+++ -+...|..+-+.....|+++-|.++|.+....+ + .-|..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44557889999999998876 467899999999999999999988887765211 0 00111
Q ss_pred -----HHHHHHHHHhccCChHHHHHHHHHh
Q 045403 102 -----LCSSLIFHLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 102 -----~~~~l~~~~~~~g~~~~a~~l~~~m 126 (144)
-++....++.-.|+++++.+++.+.
T Consensus 86 A~~~g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 86 AQTREDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHCccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 1444456666788888888888654
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.57 E-value=3.3 Score=25.22 Aligned_cols=50 Identities=10% Similarity=0.033 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhc
Q 045403 80 MYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIA 129 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~ 129 (144)
|.=+..+-++++....+.|++.+..+.+++|-+.+|+.-|.++++-++..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44456777888888889999999999999999999999999999988764
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.16 E-value=2.8 Score=28.53 Aligned_cols=115 Identities=20% Similarity=0.162 Sum_probs=77.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH----HHHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN----TFHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~ 78 (144)
....+.|+++++++....-.+..+. |...-..++..+|-.|++++|..-++...+. .|+.. +|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH---
Confidence 3467889999999999988877555 8888899999999999999999999888763 23322 333333322
Q ss_pred CcHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHh--ccCChHHHHHHHHHhhhcC
Q 045403 79 KMYMLAYRTMVDMHKKGH-----QPEEELCSSLIFHLG--KMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~-----~~~~~~~~~l~~~~~--~~g~~~~a~~l~~~m~~~~ 130 (144)
... .+.-..+- .....-...++.+.. ..|+.++|..+-.+..+..
T Consensus 79 -~~R------~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 79 -QAR------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp -HHH------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -HHH------HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 111 11112211 123334556777655 4699999999988876543
No 252
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=86.02 E-value=3.5 Score=25.34 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRKLD 57 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~ 57 (144)
.+.+|.=|...++.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445555555555555555555553
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.41 E-value=5.4 Score=27.14 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=53.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG--HQPEEELCSSLIFH 109 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~ 109 (144)
....+.|.++++..-...-++.. +-|...-..++..+|..|++++|.+-++...+.. ..|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 34567889999998887777653 3588888999999999999999999888887542 23445566666665
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.72 E-value=14 Score=30.34 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-----------------------HHHHHHHHHHHHHhCcHHHHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD-----------------------YNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------------------~~~~~~li~~~~~~g~~~~a~ 85 (144)
+...-=.+-.++...|++++|..+|.+.. .|+..+ ..=|..++..+-+.+..+.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 44433455666788899999999997742 122111 122566777777788777777
Q ss_pred HHHHHHHHC-CCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 86 RTMVDMHKK-GHQPE---EELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 86 ~~~~~m~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
++-..-.+. +-.++ ...|..+++++.+.|++++|...+-.++.
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 665544432 11111 22577888999999999998888877764
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.47 E-value=9.4 Score=27.51 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=63.9
Q ss_pred hhhhccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHH----H
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKY--DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-AISPDYNTFHILIKY----F 75 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~----~ 75 (144)
..|.+.|++++|.+.|.++.... ...-...+-..|+.+...+++..+...+++.... .-.+|...-+.+-.+ +
T Consensus 139 ~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~ 218 (429)
T 4b4t_R 139 EYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHC 218 (429)
T ss_dssp HHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 45788999999999999998753 3444577788899999999999999999987642 111332222222111 2
Q ss_pred HHhCcHHHHHHHHHHHHH
Q 045403 76 RKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~ 93 (144)
...+++..|...|-+...
T Consensus 219 l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 219 LAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp GGTSCHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHhc
Confidence 346788888888877653
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.39 E-value=3.5 Score=32.25 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=44.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 045403 39 AYCRTGDMESVIHVMRKLDELAISP-DYNTFHILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 91 (144)
.+...|+++-|+.+-++.+.. .| +..||..|.++|.+.|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 355679999999999998764 45 5789999999999999999999998888
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.27 E-value=5 Score=24.20 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 25 YDKYDVVLLNSMLCAYCRTGD---MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 25 ~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
+..|+..+-=..-.+++++.. ..++..++.+..+.+-.-.....--+--++.+.|++++|.+..+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 445555555555555665553 3467777777766542123444555556677888888888888887753
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.39 E-value=14 Score=30.27 Aligned_cols=112 Identities=7% Similarity=-0.084 Sum_probs=75.1
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCC-----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKY-----------------------DVVLLNSMLCAYCRTGDMESVIHVMRKLDEL 59 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p-----------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (144)
.+|...|++++|.+.|++.-. |+.. -..=|.-++..|-+.+.++.+.++-....+.
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356779999999999976421 1110 1122566778888889888888887766554
Q ss_pred CCCCCH----HHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 045403 60 AISPDY----NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHS 117 (144)
Q Consensus 60 g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 117 (144)
.-.-+. ..|+.+.+++...|++++|...+-.+.....+ ..-...|+...|+.|.++
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 221121 25899999999999999999888877654432 345556666666655543
No 259
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=80.77 E-value=4.1 Score=24.31 Aligned_cols=54 Identities=13% Similarity=0.017 Sum_probs=25.5
Q ss_pred HHhCcHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 76 RKEKMYMLAYRTMVDMHK-KGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
...++.+.+.++++.+.+ ..-.|.+..-.+.+..|.+ ++.+|.+.+++-...++
T Consensus 51 f~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~--~L~~A~~~~~~y~~t~d 105 (126)
T 2npu_A 51 FGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGR--DLMEAQEWCRKYMKSGN 105 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHTCC
T ss_pred hcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhH--HHHHHHHHHHHHHHhCC
Confidence 344555555555544421 1112444444455555554 55666666665543333
No 260
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=77.74 E-value=9.4 Score=23.17 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=41.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 19 RDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 19 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
+.+.+.|..+ +..=-.++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-+
T Consensus 16 ~~l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455667663 3444566667777666777888888888777667777777777777777743
No 261
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=77.38 E-value=13 Score=24.58 Aligned_cols=88 Identities=13% Similarity=0.010 Sum_probs=44.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC--CCCC----CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045403 37 LCAYCRTGDMESVIHVMRKLDEL--AISP----DYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHL 110 (144)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 110 (144)
++.+.-..++++|.++.++..+. ++++ +...-...++.-.....-..+..+.+++.. .++...-...+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45556666777777777665532 3322 111222233333333333334444444432 34455555666777
Q ss_pred hccCChHHHHHHHHHhh
Q 045403 111 GKMRAHSEALCLQHVKD 127 (144)
Q Consensus 111 ~~~g~~~~a~~l~~~m~ 127 (144)
.+.|+-++|.++|=+.+
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77777777777765443
No 262
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=77.18 E-value=12 Score=26.43 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=44.6
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 79 (144)
|.=|...|++++|.+.++++.....-...+.+..+..++-+.. .-+.+-.++..+...|+-+.......+...+....
T Consensus 19 i~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~l~ 97 (364)
T 3l6a_A 19 VTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCP 97 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCh
Confidence 4557788999999999999863110011344455444544432 23557778888888776444443333333333333
No 263
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=77.02 E-value=9.3 Score=22.71 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=44.0
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 20 DFEAKYDKYDVVLLNSMLCAYCRTG-DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 20 ~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
.+++.|..++.. =-.++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 356677775443 445666676666 6778999999998887778888888888888887754
No 264
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=76.62 E-value=11 Score=23.17 Aligned_cols=60 Identities=12% Similarity=0.249 Sum_probs=42.1
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD--MESVIHVMRKLDELAIS 62 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 62 (144)
|.=|...|+.++|.+.++++..... ....+...+..++-+.+. .+.+..++..+.+.|+-
T Consensus 16 L~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 16 LKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4557788999999999999963222 234555566666666432 56788899998887773
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=76.06 E-value=12 Score=23.47 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=61.3
Q ss_pred hhhhccCCHHHHHHHHHHHHhcC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCC--C-------
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKY-DKYDV-------VLLNSMLCAYCRTGDMESVIHVMRKLDEL--AIS--P------- 63 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~--p------- 63 (144)
..+...|.++.|+-+.+.+.... .+|++ .+...+-+++...+++.+|...|++..+. .+. +
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 45567788999998888765431 23442 35667778899999999999999984311 110 1
Q ss_pred -------------CHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q 045403 64 -------------DYNTFHILIKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 64 -------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 92 (144)
+...---+-.||.+.++.++|..+++..-
T Consensus 108 ~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 108 NSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11222236788999999999998877653
No 266
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=75.49 E-value=11 Score=23.48 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=9.5
Q ss_pred hhccCCHHHHHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLARDFE 22 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~ 22 (144)
|...|+.++|...++++.
T Consensus 20 Yf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 20 YFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHCCHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHhC
Confidence 444555555555555544
No 267
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=74.97 E-value=9.8 Score=22.95 Aligned_cols=61 Identities=8% Similarity=0.014 Sum_probs=42.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 19 RDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 19 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
+.+++.|..++.. =-.++..+...+ .-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3456677775443 344556666666 567889999998887777888877777888777743
No 268
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=74.49 E-value=8 Score=21.73 Aligned_cols=12 Identities=17% Similarity=-0.130 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 045403 81 YMLAYRTMVDMH 92 (144)
Q Consensus 81 ~~~a~~~~~~m~ 92 (144)
+.+|...+++..
T Consensus 60 L~~A~~~~~~y~ 71 (94)
T 3fap_B 60 LMEAQEWCRKYM 71 (94)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.47 E-value=22 Score=25.78 Aligned_cols=90 Identities=11% Similarity=0.131 Sum_probs=64.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCH--HHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAK--YDKYD---VVLLNSMLCAYCRTGDMESVIHVMRKLDE----LAISPDY--NTFHIL 71 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~--~~~~~l 71 (144)
+.+...|++.+|.+++.++... |.... +..|-.-++.|...+++.+|..++.+... ....|+. .-+...
T Consensus 145 ~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~ 224 (445)
T 4b4t_P 145 EIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLL 224 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Confidence 4567789999999999998743 22211 36777888999999999999999988742 2222222 235666
Q ss_pred HHHHHHhCcHHHHHHHHHHHH
Q 045403 72 IKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~ 92 (144)
+..+...+++.+|.+.|.+.-
T Consensus 225 ~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 225 VKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 777777888888877776664
No 270
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=73.77 E-value=2.6 Score=21.56 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC
Q 045403 12 EEAKQLARDFEAKYDKYDVVLLNSMLCAY-CRTGD 45 (144)
Q Consensus 12 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~~ 45 (144)
++|.+.|.+|.+..-.++.-||.-.|+.. +.-++
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 45666666665544444556666666666 44443
No 271
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=73.60 E-value=11 Score=23.31 Aligned_cols=70 Identities=7% Similarity=0.071 Sum_probs=49.0
Q ss_pred HHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHHhCcH
Q 045403 11 FEEAKQLARD-FEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL--AISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 11 ~~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~ 81 (144)
.+.+.+-+.+ +++.|..++ ..=-.++..+...+..-.|.++++.+.+. +...+..|.---++.+.+.|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T-~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYT-KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455555544 445677754 34566777777777777888999988877 6667778877777888887753
No 272
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=73.17 E-value=13 Score=22.41 Aligned_cols=61 Identities=8% Similarity=0.039 Sum_probs=41.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 19 RDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 19 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
+.+.+.|..++.. =-.++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3356667764433 345566666666667788888888877766777777777777777774
No 273
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=72.22 E-value=13 Score=22.04 Aligned_cols=59 Identities=12% Similarity=0.279 Sum_probs=42.0
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD--MESVIHVMRKLDELAI 61 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~ 61 (144)
|.=|...|+.++|.+.++++...... ...+...+..++-+.+. .+.+..++..+.+.|+
T Consensus 14 l~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 45577889999999999999632222 34555566666666542 4678889999988777
No 274
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=72.09 E-value=12 Score=22.63 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=43.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 19 RDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 19 ~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
+.+.+.|..++.. =-.++..+...+ ..-.|.+|++.+.+.+...+..|.--.++.+...|-+
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3466677775443 345566666665 5677899999998887777888877778888887754
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.25 E-value=18 Score=25.67 Aligned_cols=81 Identities=9% Similarity=0.181 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK--MYMLAYRTMVDMHKKGHQPEEELCSSLIF 108 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 108 (144)
...+.+|.=|...++.++|...++++..-... -..+...+..+.-+.+ ..+.+.+++..+.+.|+-+.......+..
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 44678888888899999999999888642221 2334455555554433 34567788888887776655555444444
Q ss_pred HHhc
Q 045403 109 HLGK 112 (144)
Q Consensus 109 ~~~~ 112 (144)
.+..
T Consensus 297 vl~~ 300 (358)
T 3eiq_C 297 IYNE 300 (358)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 276
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=67.92 E-value=30 Score=24.70 Aligned_cols=87 Identities=10% Similarity=0.001 Sum_probs=50.3
Q ss_pred hhhhccCC---HHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 045403 3 SAFCRGGC---FEEAKQLARDFEAKY----DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYF 75 (144)
Q Consensus 3 ~~~~~~g~---~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 75 (144)
...|+.|+ .+.|.+.|++..+.+ ++||... ...+.-.+ ..++-..+++...+. .+..--..++.+.
T Consensus 205 ~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~~ll~aL 277 (419)
T 3rjo_A 205 LLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS---LSSTEKSQIEFAL 277 (419)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC---CCHHHHHHHHHHc
Confidence 33445444 677888888876532 5566532 11111122 244455566666553 4555567777888
Q ss_pred HHhCcHHHHHHHHHHHHHCCC
Q 045403 76 RKEKMYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~~~~~ 96 (144)
+-..+.+...++++.......
T Consensus 278 ~~s~d~~ll~~~L~~~l~~~~ 298 (419)
T 3rjo_A 278 CRTQNKEKLQWLLDESFKGDK 298 (419)
T ss_dssp TTCSCHHHHHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHHHHhCCCC
Confidence 777787777777777665443
No 277
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=67.82 E-value=18 Score=22.05 Aligned_cols=68 Identities=12% Similarity=0.027 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 27 KYDVVLLNSMLCAYCRTGD---MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
.|+..+-=..-.++.++.. ..++..++++..+.+-.-.....--+--++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455444445555555543 3456666666655322112223333444555677777777777666653
No 278
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=67.33 E-value=12 Score=19.81 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=26.9
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC
Q 045403 21 FEAKYDKYDVVLLNSMLCAYCRTG-DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 21 m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 79 (144)
+.+.|...+..- -.++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444454443332 33344444432 33445555555555544445555555555554444
No 279
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.37 E-value=31 Score=24.22 Aligned_cols=84 Identities=15% Similarity=-0.016 Sum_probs=48.1
Q ss_pred HHhcCCHHHHHHHH----HHhhhCCCCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHH
Q 045403 40 YCRTGDMESVIHVM----RKLDELAISPDYNTFHILIKYFRKEKMYM-LAYRTMVDMH----KKG--HQPEEELCSSLIF 108 (144)
Q Consensus 40 ~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~----~~~--~~~~~~~~~~l~~ 108 (144)
+.+.|+...+-++- +.+.+.++++|.....-++..+.....-+ .=.++.+++. +.| -.=|...+..+-.
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 34555554444433 45556677888877777777776655311 1122333332 222 2235667777777
Q ss_pred HHhccCChHHHHHHH
Q 045403 109 HLGKMRAHSEALCLQ 123 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~ 123 (144)
.|.+.+++.+|..-|
T Consensus 145 ~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHccCCHHHHHHHH
Confidence 788888877777665
No 280
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=65.83 E-value=17 Score=21.01 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=15.4
Q ss_pred hhccCCHHHHHHHHHHHHh
Q 045403 5 FCRGGCFEEAKQLARDFEA 23 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~ 23 (144)
.++.|++++|.+.+++..+
T Consensus 32 ~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4678999999999887764
No 281
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=65.41 E-value=9 Score=22.93 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY 81 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 81 (144)
=-.++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-+
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3456677777666777889999998887777888877778888887753
No 282
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=64.99 E-value=10 Score=22.36 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
.++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4566666666667788888888887766777777777777777774
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.32 E-value=37 Score=24.36 Aligned_cols=92 Identities=9% Similarity=-0.019 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC--CCCC---CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC--CCCCCHHHHHHH-
Q 045403 35 SMLCAYCRTGDMESVIHVMRKLDEL--AISP---DYNTFHILIKYFRKEKMYMLAYRTMVDMHKK--GHQPEEELCSSL- 106 (144)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l- 106 (144)
-+...|...|++.+|..++.++.+. .+.. -...+..-++.|...++..++...+....+. .+.+++.+...+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5788889999999999999888753 1111 1223666677788899999998888877632 233444443322
Q ss_pred ---HHHHh-ccCChHHHHHHHHHh
Q 045403 107 ---IFHLG-KMRAHSEALCLQHVK 126 (144)
Q Consensus 107 ---~~~~~-~~g~~~~a~~l~~~m 126 (144)
-..+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 22244 788889888887764
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.90 E-value=29 Score=22.94 Aligned_cols=88 Identities=11% Similarity=0.004 Sum_probs=56.6
Q ss_pred hhhhhccCCHHHHHHHHHHHHhc--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAK--YDKYDV----VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYF 75 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~--~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 75 (144)
|+.+....++++|.++.++.++. +.++.. ..-...|+.-.....-.-+..+.+++.. .++...-...+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 56778889999999999987643 223211 1112233333333333445555555533 46677778888999
Q ss_pred HHhCcHHHHHHHHHHHH
Q 045403 76 RKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 76 ~~~g~~~~a~~~~~~m~ 92 (144)
.+.|+-++|..+|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 99999999999887665
No 285
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=63.29 E-value=33 Score=23.39 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 045403 17 LARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI 61 (144)
Q Consensus 17 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 61 (144)
+++.+.+.|+.|...++.=++..|+..=.++.+..+++.+...|.
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 334445557777777777777777776667778888887777664
No 286
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=63.22 E-value=17 Score=21.02 Aligned_cols=76 Identities=9% Similarity=0.040 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHHhCcHHHHHHHH
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDE-LAISPDYNTFHILIKYFRKEKMYMLAYRTM 88 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 88 (144)
.+.+|..-+++.... ++|......+|..+-. -++.+.++.+...+ .|+ ++.++...++...+.|-++.. +.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 467777777777554 4566666666666655 35666666666554 466 356677777777777766544 445
Q ss_pred HHHH
Q 045403 89 VDMH 92 (144)
Q Consensus 89 ~~m~ 92 (144)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.19 E-value=8.7 Score=24.40 Aligned_cols=84 Identities=11% Similarity=-0.077 Sum_probs=42.2
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVL--LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT--FHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~ 78 (144)
...++.|+.+-+..+++.+.+.|..++... -.+.+...+..|+.+-+..+ .+.|..++... -.+.+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL----VTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHH----HHcCCCccccCCCCCCHHHHHHHc
Confidence 445677888888888887766665544321 12334445556666544333 34444333211 11223333455
Q ss_pred CcHHHHHHHHHH
Q 045403 79 KMYMLAYRTMVD 90 (144)
Q Consensus 79 g~~~~a~~~~~~ 90 (144)
|+.+.+..+++.
T Consensus 90 ~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 90 RSPTCLRALLDS 101 (241)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 555544444433
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.96 E-value=39 Score=23.90 Aligned_cols=61 Identities=11% Similarity=0.261 Sum_probs=42.5
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD--MESVIHVMRKLDELAISP 63 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p 63 (144)
|.=|...|+.++|.+.++++..-... ...+...+..++-+.++ .+.+.+++..+.+.|+-+
T Consensus 224 L~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 224 LKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 45577889999999999999743222 34555566666665443 466888999998887733
No 289
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=60.70 E-value=3.6 Score=31.02 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=40.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHH
Q 045403 7 RGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 85 (144)
...+.+...+...++...-+--+..--.-++..|.+.|-.+.|.+|+..+..+-+ -+...+ .-+..|++.|+.+...
T Consensus 493 ~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 493 ATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred CccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHHHHHcCChhhcc
Confidence 3455666777777777664444667778899999999999999999999977655 344455 6677888999887653
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.48 E-value=18 Score=24.98 Aligned_cols=78 Identities=10% Similarity=0.183 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM--YMLAYRTMVDMHKKGHQPEEELCSSLIF 108 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 108 (144)
...+.+|.=|...|+.++|...++++..-... ...+...+..+.-+.++ .+.+.+++..+.+.|+-+.......+-.
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 34557778888888888888888888632111 12334444444444332 4456777888877666554444433333
Q ss_pred H
Q 045403 109 H 109 (144)
Q Consensus 109 ~ 109 (144)
.
T Consensus 246 v 246 (307)
T 2zu6_B 246 I 246 (307)
T ss_dssp H
T ss_pred H
Confidence 3
No 291
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=60.34 E-value=26 Score=24.33 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCC-HH--HHHHHHHHH----hccCChHHHHHHH
Q 045403 51 HVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPE-EE--LCSSLIFHL----GKMRAHSEALCLQ 123 (144)
Q Consensus 51 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~--~~~~l~~~~----~~~g~~~~a~~l~ 123 (144)
++++.+.+.|+.|...++.=++..+.+.=.++.+..+++.+...|.... -. +..+++..+ .+..++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4666677778888888888888888777778888888888887664432 22 223334332 2346777777777
Q ss_pred HHhhh
Q 045403 124 HVKDI 128 (144)
Q Consensus 124 ~~m~~ 128 (144)
+.++.
T Consensus 310 ~~~p~ 314 (345)
T 2qfz_A 310 QNLPT 314 (345)
T ss_dssp TSCSC
T ss_pred HcCCC
Confidence 76653
No 292
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=60.28 E-value=55 Score=25.00 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC---------cHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhc
Q 045403 45 DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK---------MYMLAYRTMVDMHKKGHQPEEE---LCSSLIFHLGK 112 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~ 112 (144)
..++..+++++++.+..+-|...|.+|++.....- .+...-.+|..|.++++.++.. ....++.++.+
T Consensus 464 sI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 464 AIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp CHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHhC
Confidence 46777777777776654456667777777654421 2233445677777776654322 23445555444
No 293
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=60.23 E-value=21 Score=24.59 Aligned_cols=45 Identities=9% Similarity=-0.055 Sum_probs=26.6
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 045403 18 ARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAIS 62 (144)
Q Consensus 18 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 62 (144)
++.+.+.|+.|...++.=++..|+..=.++.+..+|+.+...|.+
T Consensus 211 ~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 211 YNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 334444566666666666666666655566666666666655543
No 294
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=59.87 E-value=66 Score=25.79 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHH
Q 045403 10 CFEEAKQLARDFEAK----YDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 85 (144)
..+.|.+.|+..... .++||.. +...+.-.+.|..++-..++++.++. .+..--..++.+++-..+.+...
T Consensus 704 c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~aL~~~~d~~~l~ 778 (909)
T 4fke_A 704 CENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRSALACSNEVWLLN 778 (909)
T ss_dssp HHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHHHhCCCCCHHHHH
Confidence 356777788776543 2455543 23333444556666666666666653 33344456667766666766666
Q ss_pred HHHHHHHH
Q 045403 86 RTMVDMHK 93 (144)
Q Consensus 86 ~~~~~m~~ 93 (144)
++++....
T Consensus 779 ~~L~~~l~ 786 (909)
T 4fke_A 779 RYLGYTLN 786 (909)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 66655543
No 295
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=59.84 E-value=11 Score=26.32 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=37.4
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVIHVMRKLDELAI 61 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~ 61 (144)
+.=|...|++++|.+.++++...... ...+...+..++-+.. .-+.+..++..+.+.|+
T Consensus 18 l~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 18 IEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 45577789999999999888633221 2334444444444322 34567888888887776
No 296
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=58.37 E-value=27 Score=20.78 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=26.7
Q ss_pred HHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 40 YCRTGDMESVIHVMRKLDEL-AISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
|...++.+...+++..+-+. .-.|....-.+.+..|++ ++.+|...+++..+.|
T Consensus 50 yf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~--~L~~A~~~~~~y~~t~ 104 (126)
T 2npu_A 50 YFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGR--DLMEAQEWCRKYMKSG 104 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHTC
T ss_pred HhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhH--HHHHHHHHHHHHHHhC
Confidence 44555666666655443111 012544445555555543 4556666666665443
No 297
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=58.35 E-value=44 Score=25.37 Aligned_cols=90 Identities=8% Similarity=-0.006 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045403 29 DVVLLNSMLCAYCRT--GDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSL 106 (144)
Q Consensus 29 ~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (144)
+...|..-|..+... ...........++..+=.--+..----++..|.+.|..+.|.++++.+...-+ -+...+ ..
T Consensus 478 ~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eA 555 (570)
T 3f3f_C 478 DKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ES 555 (570)
T ss_dssp CTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------
T ss_pred CCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HH
Confidence 445677777766653 34555666666666542223556677889999999999999999999975533 233455 56
Q ss_pred HHHHhccCChHHHH
Q 045403 107 IFHLGKMRAHSEAL 120 (144)
Q Consensus 107 ~~~~~~~g~~~~a~ 120 (144)
+..|.++|+++.+.
T Consensus 556 L~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 556 IANFSRAGKYELVK 569 (570)
T ss_dssp --------------
T ss_pred HHHHHHcCChhhcc
Confidence 67789999988653
No 298
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=57.98 E-value=20 Score=24.82 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=22.6
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 045403 21 FEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELA 60 (144)
Q Consensus 21 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 60 (144)
+.+.|+.|...++.=++..|+..=.++.+..+++.+...|
T Consensus 219 L~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 219 FKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 3444555555555555555555555566666666665544
No 299
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=57.76 E-value=28 Score=20.91 Aligned_cols=66 Identities=14% Similarity=-0.063 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 63 PDYNTFHILIKYFRKEK---MYMLAYRTMVDMHKKGHQP-E-EELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 63 p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
|+.-|-=....++.++. +..++..+++++.+.+ | . ..-.=-|.-++.+.|++++|.+..+.+.+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 55555444445555555 4567888999998765 4 2 2233346677899999999999999987643
No 300
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=57.55 E-value=26 Score=20.49 Aligned_cols=46 Identities=7% Similarity=-0.128 Sum_probs=31.6
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC
Q 045403 49 VIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 49 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 94 (144)
..-+|+.+.+..+.|+...--.-|......++++.|.++.-++...
T Consensus 45 L~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 45 LALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4445566666667666665555566667788888888888888753
No 301
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=57.08 E-value=7.4 Score=27.17 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHCCCCCC
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK-MYMLAYRTMVDMHKKGHQPE 99 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~ 99 (144)
..+.++.=|...|+.++|...++++...+.. ...+...+..+.-+.. .-+.+..++..+.+.|+-+.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 3567888899999999999999998642211 1222233333332211 23456667777776665433
No 302
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=55.83 E-value=34 Score=21.20 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcH--HHHHHHHHHHHH
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMY--MLAYRTMVDMHK 93 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~ 93 (144)
....+|.=|...++.++|...++++......| .....+|..-...++. +.+..++..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~--~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGG--HHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999886432211 2223333333333332 235566777643
No 303
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=55.83 E-value=51 Score=23.29 Aligned_cols=77 Identities=12% Similarity=0.226 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHHhCcH--HHHHHHHHHHHHCCCCCCHHHHH
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD----YNTFHILIKYFRKEKMY--MLAYRTMVDMHKKGHQPEEELCS 104 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~ 104 (144)
..-.++|.=|...|+.++|...++++.. |+ .+....+..++ ..++. +.+..++..+.+.++-+......
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~~~~~~ 87 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATSDNFMQ 87 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3456889999999999999999999864 53 23333333333 33332 34667788887766644444444
Q ss_pred HHHHHHhc
Q 045403 105 SLIFHLGK 112 (144)
Q Consensus 105 ~l~~~~~~ 112 (144)
.+...+-.
T Consensus 88 Gf~~lle~ 95 (364)
T 3l6a_A 88 AFLNVLDQ 95 (364)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 44333333
No 304
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.88 E-value=35 Score=21.16 Aligned_cols=60 Identities=5% Similarity=-0.151 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHH-H-----HHHhCcHHHHHHHHHHHHH
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRKLDELAISP--DYNTFHILIK-Y-----FRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 93 (144)
|-.-+..|-. |++-+|.++++..=...-.+ +...|..||. . ..+.|+...|..++.+-..
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444555555 88888888888875554445 5566777777 1 3347888888888887764
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.94 E-value=51 Score=22.71 Aligned_cols=61 Identities=11% Similarity=0.266 Sum_probs=41.9
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD--MESVIHVMRKLDELAISP 63 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p 63 (144)
|.=|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 173 L~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 173 LKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 45577789999999999999743222 33555566666665433 466888899998877733
No 306
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=52.67 E-value=38 Score=20.80 Aligned_cols=60 Identities=5% Similarity=-0.026 Sum_probs=27.1
Q ss_pred hhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChH
Q 045403 57 DELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKK--GHQPEEELCSSLIFHLGKMRAHS 117 (144)
Q Consensus 57 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~ 117 (144)
++.|++++. .-..++..+...+..-.|.++++.+.+. +...+..|-=--++.+.+.|-+.
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344555533 2333444444444444556666666544 33334333222234444554443
No 307
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=52.02 E-value=20 Score=22.59 Aligned_cols=86 Identities=10% Similarity=-0.024 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCC---------CCHHHH
Q 045403 36 MLCAYCRTGDMESVIHVMRKLDELAISPDY---NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQ---------PEEELC 103 (144)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---------~~~~~~ 103 (144)
.+...+..|+.+-+..++ +.|..++. .-. +.+...+..|+.+.+..+++-+.+.|.. .|....
T Consensus 124 ~L~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~ 198 (232)
T 2rfa_A 124 PLSFAACVGSEEIVRLLI----EHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL 198 (232)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC
T ss_pred HHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC
Confidence 444445566665444444 44554432 222 3455556788888887788888877653 344444
Q ss_pred HHHHHHHhccCChHHHHHHHHHhh
Q 045403 104 SSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 104 ~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+.+..+ ++.|+.+-+.-+++.=.
T Consensus 199 tpl~~A-~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 199 TPFKLA-GVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp CHHHHH-HHHTCHHHHHHHHHHHH
T ss_pred CHHHHH-HHcCCHHHHHHHHhcCc
Confidence 554444 66788887777776544
No 308
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=51.57 E-value=13 Score=22.25 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=25.5
Q ss_pred hhhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 045403 2 ISAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD 45 (144)
Q Consensus 2 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 45 (144)
+..+...+..-.|.++++.+.+.+...+..|.---++.+.+.|-
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34444555555677777777766666565555555555555553
No 309
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=51.01 E-value=25 Score=18.29 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=26.7
Q ss_pred HHHHHHHHHH-CCCCCCHHHHH--HHHHHHhccCChHHHHHHHHHhhhcCCCCcHH
Q 045403 84 AYRTMVDMHK-KGHQPEEELCS--SLIFHLGKMRAHSEALCLQHVKDIAKDRCAMP 136 (144)
Q Consensus 84 a~~~~~~m~~-~~~~~~~~~~~--~l~~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 136 (144)
..+++..++. .++-.|...-. .++..+....|+..|.++....-.....++|+
T Consensus 16 lEel~sSLK~iq~~L~DsQSQeDi~lllqL~~~~DFQ~A~kIhNaVs~~m~k~SPp 71 (72)
T 1vf6_C 16 VEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQNAFKIHNAVTVHMSKASPP 71 (72)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4455555552 23444554433 46666677778888888887765554444444
No 310
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.59 E-value=48 Score=21.43 Aligned_cols=88 Identities=9% Similarity=0.119 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHhCcHHHHHH
Q 045403 11 FEEAKQLARDFEAKYDKYDV---VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY-NTFHILIKYFRKEKMYMLAYR 86 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~ 86 (144)
++++.+.|..-.. ..-|. ..|-..++.+ ..+...++.++|..|...||.-.. .-|-.-...+-..|++.+|..
T Consensus 60 LErc~~~F~~~~r--YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 60 MERCLIYIQDMET--YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHTTCGG--GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhccccc--ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555444332 23343 4455555554 244578899999999988886543 446667777788899999999
Q ss_pred HHHHHHHCCCCCCHH
Q 045403 87 TMVDMHKKGHQPEEE 101 (144)
Q Consensus 87 ~~~~m~~~~~~~~~~ 101 (144)
+|+.=.+.+-.|-..
T Consensus 137 Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 137 LLELGAENNCRPYNR 151 (202)
T ss_dssp HHHHHHHTTCBSHHH
T ss_pred HHHHHHHcCCccHHH
Confidence 999988887777544
No 311
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=50.12 E-value=41 Score=20.48 Aligned_cols=69 Identities=13% Similarity=-0.008 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCChHHHHHHHHHhhhcCC
Q 045403 62 SPDYNTFHILIKYFRKEK---MYMLAYRTMVDMHKKGHQPEEELCS-SLIFHLGKMRAHSEALCLQHVKDIAKD 131 (144)
Q Consensus 62 ~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~l~~~m~~~~~ 131 (144)
.|+..+-=....++.++. +..++..+++++.+.+- .+..-+- -|.-++.+.|++++|++..+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~-~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC-STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 466666555555666655 45578889999887432 1333333 466678999999999999999876443
No 312
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=50.01 E-value=10 Score=22.55 Aligned_cols=108 Identities=10% Similarity=-0.060 Sum_probs=52.7
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH---HHHHHHHHHHHh
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLL--NSMLCAYCRTGDMESVIHVMRKLDELAISPDYN---TFHILIKYFRKE 78 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~ 78 (144)
..++.|+.+.+..+++. .+..++.... .+.+...+..|+.+-+..++ +.|..++.. -++ .+...+..
T Consensus 14 ~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~ 85 (165)
T 3twr_A 14 EAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL----QHGADVHAKDKGGLV-PLHNACSY 85 (165)
T ss_dssp HHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHHH----hcCCCCCccCCCCCC-HHHHHHHc
Confidence 34566777777766543 2222222111 13444555677765444444 445444322 223 33444566
Q ss_pred CcHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHH
Q 045403 79 KMYMLAYRTMVDMHKKGHQPE---EELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
|+.+ +++.+.+.|..++ ....+.+..+ ++.|+.+-+..+++
T Consensus 86 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~ 129 (165)
T 3twr_A 86 GHYE----VAELLVKHGAVVNVADLWKFTPLHEA-AAKGKYEICKLLLQ 129 (165)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH-HHTTCHHHHHHHHH
T ss_pred CcHH----HHHHHHhCCCCCCCcCCCCCCHHHHH-HHcCCHHHHHHHHH
Confidence 7765 4444445555443 2233344443 55677776665554
No 313
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=49.96 E-value=43 Score=20.68 Aligned_cols=92 Identities=14% Similarity=0.056 Sum_probs=53.4
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH---HHHHHHHHHHH-h
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN---TFHILIKYFRK-E 78 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~-~ 78 (144)
..++.|+++....+++. ++.. +...-.+.+...+..|+.+.-.++.+.+.+.|..+|.. -++.|..++.. .
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 34677888886666543 3321 10112245556667777777777888888888766543 33444433322 2
Q ss_pred CcHHHHHHHHHHHHHCCCCCC
Q 045403 79 KMYMLAYRTMVDMHKKGHQPE 99 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~ 99 (144)
.+.....++.+-+.+.|..++
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSS
T ss_pred cchhhHHHHHHHHHHCCCCCC
Confidence 334455667777777776554
No 314
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.82 E-value=24 Score=17.80 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=15.9
Q ss_pred cCCHHHHHHHHHHhhhCCCCCC
Q 045403 43 TGDMESVIHVMRKLDELAISPD 64 (144)
Q Consensus 43 ~~~~~~a~~~~~~m~~~g~~p~ 64 (144)
.|+.+.|.+.+-.|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4678888888888777666665
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.50 E-value=9.9 Score=23.40 Aligned_cols=15 Identities=7% Similarity=0.038 Sum_probs=9.1
Q ss_pred hhccCCHHHHHHHHH
Q 045403 5 FCRGGCFEEAKQLAR 19 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~ 19 (144)
.+..|+.+.+..+++
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 455666666666654
No 316
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.07 E-value=44 Score=20.51 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 61 ISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 61 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
.+-|..-...-|..--...+ +..+|..|...|+-. -...|..-...+-..|++.+|.++++.=.+
T Consensus 64 YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp GTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555544444433323333 688888888777644 456777888888888999999999887443
No 317
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=48.67 E-value=15 Score=18.34 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=21.3
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG 44 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 44 (144)
.|.+..-.++-..+.++=++.|..+...++++..+.+.+-|
T Consensus 5 ~Yvs~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG 45 (55)
T 1dp3_A 5 AYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELG 45 (55)
T ss_dssp SCCCCTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT
T ss_pred eehhhHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 34444445555555555555555555555555555544443
No 318
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=48.18 E-value=20 Score=23.87 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=29.3
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhC
Q 045403 41 CRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEK 79 (144)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 79 (144)
...++-+.+..++++..+.|..|.......++.+..+.|
T Consensus 47 l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG 85 (258)
T 2i2x_B 47 IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVI 85 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 445778888888888888888777776667777766655
No 319
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=48.17 E-value=15 Score=21.58 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=20.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG 44 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 44 (144)
.+...+..-.|.++++.+.+.+...+..|.--.++.+.+.|
T Consensus 19 ~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 19 LLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444445556666666666555444444444444444444
No 320
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=48.12 E-value=53 Score=21.22 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHH
Q 045403 47 ESVIHVMRKLDELAISPDYNTFHILIKYFRK--EKMYMLAYRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQ 123 (144)
Q Consensus 47 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~ 123 (144)
+++...|..-.. .+-|..-...-|..--. .++..++..+|..|...|+-- -...|..-...+-..|++.+|.++|
T Consensus 61 Erc~~~F~~~~r--YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 61 ERCLIYIQDMET--YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHTTCGG--GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhccccc--ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334444443322 34555543333333222 555778888999998777643 4667888888888899999999999
Q ss_pred HHhhh
Q 045403 124 HVKDI 128 (144)
Q Consensus 124 ~~m~~ 128 (144)
+.=.+
T Consensus 139 ~~GI~ 143 (202)
T 3esl_A 139 ELGAE 143 (202)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86443
No 321
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=46.53 E-value=81 Score=22.87 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------CCCHH---------
Q 045403 11 FEEAKQLARDFEA--------KYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAI-------SPDYN--------- 66 (144)
Q Consensus 11 ~~~a~~~~~~m~~--------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~--------- 66 (144)
.++...+++.... .++..+......+... ..|+..++..+++......- ..+..
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 3455555555543 2233455555555555 46778888877777653211 01111
Q ss_pred ---------HHHHHHHHHH---HhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 045403 67 ---------TFHILIKYFR---KEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRA 115 (144)
Q Consensus 67 ---------~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 115 (144)
.+-.++.++. +.++.+.|..++.+|.+.|..|....-..+..+.-..|.
T Consensus 245 ~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 245 SARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 1122333332 356888899999999888876665555555555555554
No 322
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=46.33 E-value=6.4 Score=23.14 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHCCCC
Q 045403 44 GDMESVIHVMRKLDELAIS-PDYNTFHILIKYFR---KEKMYMLAYRTMVDMHKKGHQ 97 (144)
Q Consensus 44 ~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~ 97 (144)
..+++|.+++..|++.-+. -.+..||..|..+- ..++. ..++..+.+.++.
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 3688999999999876443 36678888887764 34443 4455666665543
No 323
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=44.40 E-value=18 Score=21.38 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=21.5
Q ss_pred hhhccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 045403 4 AFCRGG-CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG 44 (144)
Q Consensus 4 ~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 44 (144)
.+...+ ..-.|.++++.+.+.++..+..|.---++.+.+.|
T Consensus 26 ~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 26 MLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 333333 44556666766666655555555444445554444
No 324
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=44.30 E-value=22 Score=19.36 Aligned_cols=35 Identities=9% Similarity=-0.051 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD 45 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 45 (144)
.++|...|.+|+...-.+...+|...|...+.-.+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpR 50 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR 50 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSG
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCc
Confidence 45566666666543222233455555555544433
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.19 E-value=51 Score=19.84 Aligned_cols=62 Identities=5% Similarity=0.001 Sum_probs=29.4
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 045403 54 RKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAH 116 (144)
Q Consensus 54 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 116 (144)
+.+++.|++++. .=..++..+...+..-.|.++++.+.+.+...+..|-=--++.+.+.|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345556664432 23334444444455555666777776554444444333334444555443
No 326
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=44.05 E-value=40 Score=18.68 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=34.6
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 045403 51 HVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALC 121 (144)
Q Consensus 51 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 121 (144)
.+++.+.+.|+ .+......+-. .......+.+.++++.+.+.| ...|..+++++.+.|+.+-|..
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHH
Confidence 45666666665 33333333222 001135666777777776543 3466667777766566554433
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.01 E-value=25 Score=22.09 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=24.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVM 53 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 53 (144)
...++.|+++....+++.-...-..++..-++.+ ...+..|+.+-+..++
T Consensus 11 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll 60 (231)
T 3aji_A 11 CNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEIVEFLL 60 (231)
T ss_dssp HHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHHHHHHHH
Confidence 3456677787777776653321112233333333 3334555554444333
No 328
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=42.92 E-value=23 Score=18.67 Aligned_cols=31 Identities=16% Similarity=0.007 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYC 41 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 41 (144)
.++|.+.|.+|....-.+...+|...+..+.
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~ 44 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNASWEQAMKMII 44 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHc
Confidence 3445555555443322223334444444443
No 329
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.56 E-value=57 Score=19.99 Aligned_cols=54 Identities=9% Similarity=-0.014 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHH
Q 045403 48 SVIHVMRKLDELAISPDY-NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEE 101 (144)
Q Consensus 48 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 101 (144)
++.++|..|.++||.-.. .-|-.-...+-..|++.+|.++++.=.+.+-.|-..
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 389999999999887544 456777777888999999999999999888777544
No 330
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=42.47 E-value=57 Score=19.98 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHhccCC
Q 045403 99 EEELCSSLIFHLGKMRA 115 (144)
Q Consensus 99 ~~~~~~~l~~~~~~~g~ 115 (144)
+..+-...+.++.+.|+
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33344444444444443
No 331
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=42.32 E-value=29 Score=17.53 Aligned_cols=22 Identities=14% Similarity=-0.096 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCC
Q 045403 8 GGCFEEAKQLARDFEAKY-DKYD 29 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~-~~p~ 29 (144)
.-|++.|...|.+++..| ++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 357788888888877543 4444
No 332
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.47 E-value=5.9 Score=25.72 Aligned_cols=116 Identities=8% Similarity=-0.021 Sum_probs=66.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHH--hcCCHHHHHHHHHHhhhCC---------CC-C
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVV-------LLNSMLCAYC--RTGDMESVIHVMRKLDELA---------IS-P 63 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m~~~g---------~~-p 63 (144)
...++.|+.+....+++.+.+.|..++.. -++.|..|.. +.|+.+-+..+++.-...+ +. .
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 34567899999888988887777766643 3455655543 5677777777766543311 11 1
Q ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHH-----------------HHHHHHHHHhccCChHHHHHHHH
Q 045403 64 DYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEE-----------------LCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
|..-++ .+...+..|+.+ +++.+.+.|..++.. ..+.|..+ +..|+.+-+..+++
T Consensus 90 d~~g~t-~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A-~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 90 YYRGQT-ALHIAIERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA-ACTNQPHIVHYLTE 161 (260)
T ss_dssp SEESBC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHH-HHTTCHHHHHHHHH
T ss_pred ccCCCC-HHHHHHHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHH-HHcCCHHHHHHHHh
Confidence 112223 344445677765 444445556555432 33444444 56778776666665
No 333
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=41.17 E-value=21 Score=21.62 Aligned_cols=92 Identities=10% Similarity=-0.009 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCC---CHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HCCCCCCHHHHHHH
Q 045403 32 LLNSMLCAYCRTGDMESVIHVMRKLDE-LAISP---DYNTFHILIKYFRKEKMYMLAYRTMVDMH-KKGHQPEEELCSSL 106 (144)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~l 106 (144)
....+|..+-. -++.+.++.+...+ .|+.| ++.++..+++...+.|-++.. +.+..|. .++. .+++|+..
T Consensus 42 ~~dg~iq~fe~--t~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~RN~--tvH~Y~e~ 116 (146)
T 1jog_A 42 LIAGAIQKFEF--VYELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMRNI--TSHTYDQE 116 (146)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHHTT--GGGTTSHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHhhH--hcccccHh
Confidence 33344444333 35666666666654 46654 467888888888888877665 4555555 3433 33444432
Q ss_pred --HHHHhc-cCChHHHHHHHHHhhh
Q 045403 107 --IFHLGK-MRAHSEALCLQHVKDI 128 (144)
Q Consensus 107 --~~~~~~-~g~~~~a~~l~~~m~~ 128 (144)
-..|.. ...+.....+.+.+.+
T Consensus 117 ~a~~v~~~I~~~l~~f~~l~~~l~~ 141 (146)
T 1jog_A 117 KAMAVYAQIDDFLIESSFLLEQLRQ 141 (146)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222 1155566666666653
No 334
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=41.04 E-value=52 Score=19.47 Aligned_cols=47 Identities=6% Similarity=-0.095 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHH
Q 045403 36 MLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 85 (144)
.|...+.+++.+-|+++++-.++.| +...|.+++-.|-..=++|-++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 3344455566666666666666543 4455555555555544444433
No 335
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=40.35 E-value=45 Score=18.15 Aligned_cols=63 Identities=11% Similarity=-0.083 Sum_probs=39.2
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 045403 49 VIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEA 119 (144)
Q Consensus 49 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 119 (144)
+..+++.+.+.|+ .+..-+..+-.. ....+.|..+++.+.+. ....|..++.++.+.|..+-|
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~~---~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRNE---PTQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHTS---SSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHcC---CChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCHHHHH
Confidence 4456667777666 444444444432 46677788888777533 456777788887776654433
No 336
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.14 E-value=66 Score=19.99 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=23.0
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 84 AYRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 84 a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
...+|..|...|+-. -...|..-...+-..|++.+|.+||+.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~ 121 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQE 121 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566666555432 344455555555556666666666664
No 337
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=40.11 E-value=23 Score=23.96 Aligned_cols=25 Identities=8% Similarity=-0.036 Sum_probs=15.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHhhh
Q 045403 104 SSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 104 ~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
|.+++-|...|+++.|.+++++++.
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 3456666666666666666665543
No 338
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.94 E-value=1.2e+02 Score=22.83 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHH-------HHHHHHhCcHHHHHHHHHHHH
Q 045403 30 VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDY-NTFHIL-------IKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l-------i~~~~~~g~~~~a~~~~~~m~ 92 (144)
...+|.+++.|...+.++.|..+.++..- |.. ..-+-. -..+.-.+++.+|.+.+....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f----P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY----PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS----CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC----CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 47889999999999999999999998752 211 111111 122334566777766665543
No 339
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=39.88 E-value=35 Score=16.71 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=12.4
Q ss_pred CcHHHHHHHHHHHHHCCCCCC
Q 045403 79 KMYMLAYRTMVDMHKKGHQPE 99 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~ 99 (144)
.|..+|.++++.+.+.|-.|+
T Consensus 7 RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 355666666666666654443
No 340
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=39.59 E-value=6 Score=29.35 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT 67 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 67 (144)
..++++|++..++.++.+-+.++ |-.-.|.++|.++.++|+.||..|
T Consensus 211 ~~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~~~i~~Dlvt 257 (551)
T 1x87_A 211 TDSLDAALEMAKQAKEEKKALSI-------------GLVGNAAEVLPRLVETGFVPDVLT 257 (551)
T ss_dssp ESCHHHHHHHHHHHHHTTCCEEE-------------EEESCHHHHHHHHHHTTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcCCceEE-------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 46778888888887776655332 223446778888888888887765
No 341
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=38.88 E-value=1.8e+02 Score=24.77 Aligned_cols=83 Identities=11% Similarity=0.155 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcC---------------CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 31 VLLNSMLCAYCRTG---------------DMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 31 ~~~~~li~~~~~~~---------------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
..=+.||+|+++.| ..++..+.|.++.+.-=.-|.......+..-...+++-+|.+++.++.+.
T Consensus 1235 ~~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~- 1313 (1354)
T 3lxu_X 1235 KQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE- 1313 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 34567777777643 24566777777776522234444444455555788999999999999865
Q ss_pred CCCCHHHHHHHHHHHhccCC
Q 045403 96 HQPEEELCSSLIFHLGKMRA 115 (144)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~g~ 115 (144)
+|....|..++..+-..|=
T Consensus 1314 -k~~~~~~~~~~~~~~~l~w 1332 (1354)
T 3lxu_X 1314 -KRTRDHFVELAAINGALGH 1332 (1354)
T ss_dssp -TCCHHHHHHHHHHHHHHSC
T ss_pred -cccHHHHHHHHHHHHHcCC
Confidence 3788888888877766553
No 342
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.51 E-value=83 Score=20.68 Aligned_cols=46 Identities=2% Similarity=-0.188 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 82 MLAYRTMVDMHKKGHQP-EEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+....+|..|...|+-- -...|..-...+-..|++.+|.+||+.=.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678888888877644 45678888888888999999999998643
No 343
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=38.35 E-value=6.1 Score=29.31 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT 67 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 67 (144)
..++++|++..++.++.+-+.++ |-.-.|.++|.++.++|+.||..|
T Consensus 212 ~~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~~~i~~Dlvt 258 (552)
T 2fkn_A 212 TASIEEALAWAEEAKLAGKPLSI-------------ALLGNAAEVHHTLLNRGVKIDIVT 258 (552)
T ss_dssp ESCHHHHHHHHHHHHHTTCCEEE-------------EEESCHHHHHHHHHTTTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcCCceEE-------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 46778888888887776655332 223446778888888888887765
No 344
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=38.34 E-value=8.4 Score=23.74 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHCCC
Q 045403 44 GDMESVIHVMRKLDELAIS-PDYNTFHILIKYFR---KEKMYMLAYRTMVDMHKKGH 96 (144)
Q Consensus 44 ~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~ 96 (144)
..+++|.+++..|++.-+. -.+..||..|..+- ..++. ..++..+.+.++
T Consensus 72 ~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~l 125 (152)
T 1rw2_A 72 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGI 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCc
Confidence 3688999999999865433 24467888777654 34444 444555655444
No 345
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.47 E-value=25 Score=21.27 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 045403 10 CFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTG 44 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 44 (144)
..-.|.++++.+.+.++..+..|.---++.+.+.|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34456666666666555555554444445554444
No 346
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=37.30 E-value=5.8 Score=29.44 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 045403 8 GGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT 67 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 67 (144)
..++++|++..++.++.+-+.++ |-.-.|.++|.++.++|+.||..|
T Consensus 216 ~~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~~~i~~Dlvt 262 (557)
T 1uwk_A 216 ATDLDDALVRIAKYTAEGKAISI-------------ALHGNAAEILPELVKRGVRPDMVT 262 (557)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCEE-------------EEESCHHHHHHHHHHHTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcCCceEE-------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 46778888888887776655332 223346778888888888887765
No 347
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.23 E-value=41 Score=20.97 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=47.6
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH---HHHHHHHHHHh
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVV--LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT---FHILIKYFRKE 78 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~ 78 (144)
..++.|+++.+..+++ .|..++.. .-.+.+...+..|+.+-+..+++ .|..++... -.+.+...+..
T Consensus 15 ~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 15 KATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS----KGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH----cCCcchhhcCCcCCChhHHHHHc
Confidence 3456677665555443 44443321 11234555566777665554443 333222111 11233444456
Q ss_pred CcHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHH
Q 045403 79 KMYMLAYRTMVDMHKKGHQPE---EELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
|+.+ +++.+.+.|..++ ....+.+..+ +..|+.+-+..+++
T Consensus 87 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 87 GHLS----MVVQLMKYGADPSLIDGEGCSCIHLA-AQFGHTSIVAYLIA 130 (240)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHH
T ss_pred CCHH----HHHHHHHcCCCCcccCCCCCCHHHHH-HHcCHHHHHHHHHh
Confidence 6644 3344444444332 2222333333 44566654444444
No 348
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.89 E-value=74 Score=19.64 Aligned_cols=15 Identities=20% Similarity=0.067 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhccC
Q 045403 100 EELCSSLIFHLGKMR 114 (144)
Q Consensus 100 ~~~~~~l~~~~~~~g 114 (144)
..+-...+.++.+.+
T Consensus 157 ~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 157 GWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 333333344444433
No 349
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=36.14 E-value=42 Score=20.12 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=53.2
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHHhCcH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT--FHILIKYFRKEKMY 81 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~ 81 (144)
..++.|+.+.+..+++.-...--.++..-++. +...+..|+.+-+..++ +.|..++... -.+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~ 85 (179)
T 3f6q_A 11 TQCREGNAVAVRLWLDNTENDLNQGDDHGFSP-LHWACREGRSAVVEMLI----MRGARINVMNRGDDTPLHLAASHGHR 85 (179)
T ss_dssp HHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCCCH-HHHHHHcCcHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 45667888777777654221111223333333 44445667765444443 4454443221 12234444566775
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHH
Q 045403 82 MLAYRTMVDMHKKGHQPE---EELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
+ +++.+.+.|..++ ....+.|..+ +..|+.+-+.-+++
T Consensus 86 ~----~v~~Ll~~g~~~~~~d~~g~t~L~~A-~~~~~~~~v~~Ll~ 126 (179)
T 3f6q_A 86 D----IVQKLLQYKADINAVNEHGNVPLHYA-CFWGQDQVAEDLVA 126 (179)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHH
T ss_pred H----HHHHHHHcCCCCCccCCCCCCHHHHH-HHcCCHHHHHHHHH
Confidence 5 4444455555443 2223344433 45566665555544
No 350
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.05 E-value=69 Score=19.04 Aligned_cols=61 Identities=8% Similarity=-0.037 Sum_probs=27.0
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 045403 55 KLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAH 116 (144)
Q Consensus 55 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 116 (144)
.+++.|++++.-=. .++..+...+..-.|.++++.+.+.+...+..|----++.+.+.|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34455554443322 23333333444444555666665544344444333334444444443
No 351
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=35.93 E-value=1.2e+02 Score=21.64 Aligned_cols=64 Identities=9% Similarity=-0.100 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHC
Q 045403 29 DVVLLNSMLCAYCRTGD--MESVIHVMRKLDELAISPDYNTFHILIKYF-RKEKMYMLAYRTMVDMHKK 94 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~ 94 (144)
+..+|..+|.-.....+ .+++..+++.+.+-.+ +..-..+++-++ .+.-..++...+.+.|.+.
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~--~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~ 88 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNA--RPAQIAAFAVAMTMKAPTADEVGELAGVMLSH 88 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHh
Confidence 44579999999888775 5789999999987544 334455555554 4444677777777777653
No 352
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=34.86 E-value=28 Score=24.13 Aligned_cols=41 Identities=15% Similarity=0.022 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 87 TMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 87 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+++.+.+.|+.|...++..++..|.+.=.++.+..+++.+-
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l 255 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFC 255 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 44555555555555555556666555555555666655544
No 353
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=34.52 E-value=1.7e+02 Score=24.93 Aligned_cols=78 Identities=15% Similarity=0.037 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 045403 11 FEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVD 90 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 90 (144)
.+.-.+.|.++.+---.-|....-..+..-..++++-.|.+++.++.+. +|....|..++..+...| |+....+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 4555666666665422224444444444445789999999999999876 478888888887776665 3333344444
Q ss_pred H
Q 045403 91 M 91 (144)
Q Consensus 91 m 91 (144)
+
T Consensus 1342 ~ 1342 (1354)
T 3lxu_X 1342 M 1342 (1354)
T ss_dssp H
T ss_pred h
Confidence 4
No 354
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=34.07 E-value=27 Score=18.88 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 045403 60 AISPDYNTFHILIKYFRKEKMYMLAYRTMVD 90 (144)
Q Consensus 60 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 90 (144)
+++|++.||+-+.....+.--..++..+.++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666555555443333333333333
No 355
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=33.70 E-value=61 Score=22.22 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=25.1
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 51 HVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 51 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
++++.+.+.|+.|...++.=++..+...=.++.+..+++.+...|
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g 253 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQG 253 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCC
Confidence 344445555555555555555555555555666666666665544
No 356
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=33.69 E-value=15 Score=18.53 Aligned_cols=21 Identities=10% Similarity=-0.187 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCH
Q 045403 9 GCFEEAKQLARDFEAKYDKYDV 30 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~~~~p~~ 30 (144)
=+++.|...|.+. +..++|+.
T Consensus 33 Wd~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 33 WNYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp TCSHHHHHHHHHS-TTTSCHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHH
Confidence 4667777777775 33455543
No 357
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=33.59 E-value=1.6e+02 Score=23.98 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLN---SMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
++.--|+.+.+..+.+.+... .....-|. ++..+|+..|+...+.+++..+.+... .+......+--++...|+
T Consensus 533 Gll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSS
T ss_pred HhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCC
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHhhhcCCCCcHHHHHHhhcC
Q 045403 81 YMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAH-SEALCLQHVKDIAKDRCAMPFMRKFFIF 144 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~l~~~m~~~~~~~~~~~~~~~~~~ 144 (144)
.+.+.++++.+.+.+ .|...--.++.-+....|.- .++.+++..+....+.-........+++
T Consensus 610 ~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 610 YTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp CSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHH
No 358
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=33.19 E-value=1.2e+02 Score=20.96 Aligned_cols=110 Identities=11% Similarity=0.014 Sum_probs=59.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhh----hCCC--CCCHHHHHHHHHHHHHhCcHHHHHHHHH-
Q 045403 18 ARDFEAKYDKYDVVLLNSMLCAYCRTGDM-ESVIHVMRKLD----ELAI--SPDYNTFHILIKYFRKEKMYMLAYRTMV- 89 (144)
Q Consensus 18 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~----~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~- 89 (144)
.+...+.+.+++...-.-++..+...+.- ..-.++.+++. +.|- .-|...+..+-..|.+.|++.+|...|-
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 44455557888888888888777664321 11233344443 2222 2366777778888888888877766442
Q ss_pred ----------HH-----HHC--CCCCCHHHHHH-HHHHHhccCChHHHHHHHHHhh
Q 045403 90 ----------DM-----HKK--GHQPEEELCSS-LIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 90 ----------~m-----~~~--~~~~~~~~~~~-l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
+| .+. |.+-+...|-+ .+-.|.-.|++..|.++++...
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 11 111 22111222211 2223455678888888877643
No 359
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=33.00 E-value=81 Score=21.78 Aligned_cols=82 Identities=7% Similarity=-0.125 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhC---CCCCCHH---HHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 045403 47 ESVIHVMRKLDEL---AISPDYN---TFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (144)
Q Consensus 47 ~~a~~~~~~m~~~---g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 120 (144)
+.|..+|..+.+. ...++.. .....+..+.+.-+ -++++.+.+.|+.|...++..++..|.+.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~d----P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID----EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 4566666665543 1222221 22233333434334 346777778888888888888999998888888999
Q ss_pred HHHHHhhhcCCC
Q 045403 121 CLQHVKDIAKDR 132 (144)
Q Consensus 121 ~l~~~m~~~~~~ 132 (144)
.+++.+-....+
T Consensus 265 rlWD~~l~~g~~ 276 (345)
T 2qfz_A 265 RLWDTYQSEPDG 276 (345)
T ss_dssp HHHHHHTTSTTT
T ss_pred HHHHHHHhCCCC
Confidence 999987765443
No 360
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=32.34 E-value=28 Score=20.71 Aligned_cols=111 Identities=10% Similarity=0.027 Sum_probs=48.0
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHHhC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD---YNTFHILIKYFRKEK 79 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g 79 (144)
...++.|+++.+..+++.-...--.+|..-++.+ ...+..|+.+-+..+++. |..++ ..-.+ .+...+..|
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t-~L~~A~~~~ 80 (172)
T 3v30_A 7 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL-IWASAFGEIETVRFLLEW----GADPHILAKERES-ALSLASTGG 80 (172)
T ss_dssp HHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHH-HHHHHTTCHHHHHHHHHH----TCCTTCCCTTCCC-HHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHH-HHHHHcCCHHHHHHHHHc----CCCchhhcccCCC-HHHHHHHCC
Confidence 3456677777766665442110011233333333 334456666555554433 33222 12222 233344556
Q ss_pred cHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHH
Q 045403 80 MYMLAYRTMVDMHKKGHQPE---EELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
..+ +++.+.+.|..++ ....+.|..+ ++.|+.+-+..+++
T Consensus 81 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~ 123 (172)
T 3v30_A 81 YTD----IVGLLLERDVDINIYDWNGGTPLLYA-VRGNHVKCVEALLA 123 (172)
T ss_dssp CHH----HHHHHHTTTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHH
T ss_pred CHH----HHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHHH
Confidence 644 3333444444332 2223333333 34466655554444
No 361
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.71 E-value=93 Score=19.25 Aligned_cols=48 Identities=6% Similarity=-0.033 Sum_probs=22.5
Q ss_pred CcHHHHHHHHHHHHHCCCCC--CHHHHHHHHH------HHhccCChHHHHHHHHHh
Q 045403 79 KMYMLAYRTMVDMHKKGHQP--EEELCSSLIF------HLGKMRAHSEALCLQHVK 126 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~------~~~~~g~~~~a~~l~~~m 126 (144)
|++-+|-++++..=+..-.+ ....|..||. ...+.|+..-|..++++-
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555555555554332223 3334444444 112355555555555543
No 362
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=31.59 E-value=72 Score=18.33 Aligned_cols=48 Identities=8% Similarity=-0.060 Sum_probs=32.1
Q ss_pred HHHHHHHHHh--cCCC-----------CCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCC
Q 045403 14 AKQLARDFEA--KYDK-----------YDVVLLNSMLCAYCRTG---DMESVIHVMRKLDELAI 61 (144)
Q Consensus 14 a~~~~~~m~~--~~~~-----------p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~ 61 (144)
..+++++|.. .|++ |+.++=+-+++.+.+++ .-++|..+-+.+.+.|+
T Consensus 8 l~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~GselVdWLi~~~~~~~R~EAv~lgq~Ll~~G~ 71 (109)
T 1uhw_A 8 LGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKLVRNRQEGLMISASLLSEGY 71 (109)
T ss_dssp HHHHHHHHHCTTTSCCCEEEESSSCEEEEECCHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCCceeeeeEECCEEccccccchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCe
Confidence 4566777773 4553 56666667777777765 44778888888777774
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.42 E-value=2.1e+02 Score=23.13 Aligned_cols=87 Identities=14% Similarity=0.005 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCC-----------------
Q 045403 36 MLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQP----------------- 98 (144)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----------------- 98 (144)
++..+...+.++-|.++..-. +-+...-=.+-.+|...|+.++|..+|++... |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 556666677777665543332 22332222445557778888888888876531 1110
Q ss_pred ------CHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 99 ------EEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 99 ------~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
...=|..+++.|-+.+.++.+.++.+.-.+
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 112467788888889888888877776443
No 364
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.15 E-value=81 Score=18.37 Aligned_cols=43 Identities=5% Similarity=-0.206 Sum_probs=29.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
-+|+.+.+..+.|+...--.-+......++++.|.++...+..
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566666666655544444445556778899999999887765
No 365
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=31.02 E-value=77 Score=21.49 Aligned_cols=44 Identities=7% Similarity=0.187 Sum_probs=23.2
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 52 VMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 52 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
+++.+.+.|+.|...++.=++..+...=.++.+..+++.+...|
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 33444444555555555555555555445555566666555444
No 366
>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A {Chryseobacterium proteolyticum} PDB: 2ksv_A 2z8t_X
Probab=30.63 E-value=1e+02 Score=19.42 Aligned_cols=21 Identities=10% Similarity=-0.047 Sum_probs=11.5
Q ss_pred cCCHHHHHHHHHHhhhCCCCC
Q 045403 43 TGDMESVIHVMRKLDELAISP 63 (144)
Q Consensus 43 ~~~~~~a~~~~~~m~~~g~~p 63 (144)
.|.+.+|..+-.++.+.|+.|
T Consensus 40 dGCyARAHlm~~~l~~~Gi~p 60 (185)
T 2zk9_X 40 DGCYARAHKMRQILMNNGYDC 60 (185)
T ss_dssp SCHHHHHHHHHHHHHHTTBCC
T ss_pred ccHHHHHHHHHHHHHHcCCCh
Confidence 344555555555555555544
No 367
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=30.58 E-value=54 Score=16.13 Aligned_cols=38 Identities=8% Similarity=-0.011 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHH
Q 045403 14 AKQLARDFEAKYDKYDVVLL-NSMLCAYCRTGDMESVIHVMR 54 (144)
Q Consensus 14 a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~ 54 (144)
..+-+.+|...|+. |..-| +.++. .+.|+...|+++++
T Consensus 10 l~~al~qMl~MGF~-negGWLt~LL~--~k~gDI~~aLD~lq 48 (52)
T 1q02_A 10 LIESLSQMLSMGFS-DEGGWLTRLLQ--TKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHTTTCC-CTTSHHHHHHH--HTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCC-ccccHHHHHHH--HccCCHHHHHHHhh
Confidence 34445567777776 55444 33332 35566666666553
No 368
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=30.31 E-value=41 Score=19.21 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=13.8
Q ss_pred hhccCCHHHHHHHHHHHHh
Q 045403 5 FCRGGCFEEAKQLARDFEA 23 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~ 23 (144)
.++.|++++|.+++++..+
T Consensus 30 ~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4577888888888777654
No 369
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.30 E-value=1.1e+02 Score=19.80 Aligned_cols=48 Identities=15% Similarity=-0.125 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCChHHHHHHHHHhhh
Q 045403 81 YMLAYRTMVDMHKKGHQPEEEL----CSSLIFHLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~l~~~m~~ 128 (144)
++.|..+++.+.+.--.+.... -...+..|.+.|.+++|.+++++.-+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 6677888877764321111111 22345678899999999999998543
No 370
>3a54_A Protein-glutaminase; mutant structure like A substrate-enzyme complex, hydrolase; 1.50A {Chryseobacterium proteolyticum} PDB: 3a55_A 3a56_A*
Probab=30.20 E-value=79 Score=21.44 Aligned_cols=37 Identities=19% Similarity=0.076 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHhhhCCCCC
Q 045403 27 KYDVVLLNSMLCAYCRT-------------------GDMESVIHVMRKLDELAISP 63 (144)
Q Consensus 27 ~p~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~g~~p 63 (144)
-||+.+++.|.+.+... |.+.+|..+-.++.+.|+.|
T Consensus 119 IP~~~T~~~Lf~~i~n~rd~r~~asq~~I~F~YpdDGCyARAHLM~~~l~~~Gi~p 174 (305)
T 3a54_A 119 IPDVATLNSLFNQIKNQSCGTSTASSPCITFRYPVDGCYARAHKMRQILMNNGYDC 174 (305)
T ss_dssp ESCHHHHHHHHHHHHTTBTTSTTCCSSCBCTTCTTSCHHHHHHHHHHHHHHTTBCC
T ss_pred CCchhhHHHHHHHHhhhhcchhhccCCCccccCCcccHHHHHHHHHHHHHHcCCCh
Confidence 38899999988877543 34555666656666656554
No 371
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=30.18 E-value=2.2e+02 Score=23.13 Aligned_cols=79 Identities=8% Similarity=-0.009 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHH
Q 045403 10 CFEEAKQLARDFEAKY----DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAY 85 (144)
Q Consensus 10 ~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 85 (144)
..++|.+.|++....+ ++||... ...+ .+- +..++-..++++.++. .+..--..++.+++-..+.+...
T Consensus 766 c~~~A~~~f~~~~~~~~~~~i~~~lr~--~Vyc-~~~-~~~~~~~~l~~~y~~s---~~~~ek~~ll~aL~ct~d~~ll~ 838 (967)
T 3se6_A 766 CIQKAAELFSQWMESSGKLNIPTDVLK--IVYS-VGA-QTTAGWNYLLEQYELS---MSSAEQNKILYALSTSKHQEKLL 838 (967)
T ss_dssp HHHHHHHHHHHHHHTTTCSCCCHHHHH--HHHH-HHT-TSHHHHHHHHHHHHHC---SCHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcccCChhhhh--HhHh-hhh-ccHHHHHHHHHHHhcc---CCHHHHHHHHHHhcCCCCHHHHH
Confidence 3677888888876532 3444332 1111 111 2234444555555543 34444567777777777777777
Q ss_pred HHHHHHHHCC
Q 045403 86 RTMVDMHKKG 95 (144)
Q Consensus 86 ~~~~~m~~~~ 95 (144)
++++......
T Consensus 839 ~~L~~~l~~~ 848 (967)
T 3se6_A 839 KLIELGMEGK 848 (967)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHhCcC
Confidence 7776665543
No 372
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=29.98 E-value=42 Score=19.09 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.1
Q ss_pred hhccCCHHHHHHHHHHHHh
Q 045403 5 FCRGGCFEEAKQLARDFEA 23 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~ 23 (144)
.++.|++++|.+.+++..+
T Consensus 28 ~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4677888888888777654
No 373
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.89 E-value=1.2e+02 Score=19.92 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHH
Q 045403 47 ESVIHVMRKLDELAISPDY-NTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEE 101 (144)
Q Consensus 47 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 101 (144)
+.+.++|..|...||.-.. .-|-.-...+-..|++.+|..+|+.=.+.+-.|-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4778999999999887544 456777777888999999999999998887777543
No 374
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.64 E-value=1.1e+02 Score=19.30 Aligned_cols=50 Identities=8% Similarity=0.045 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045403 63 PDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEELCSSLIFHLGKM 113 (144)
Q Consensus 63 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 113 (144)
|....++-++..++...-++++...+++....| ..+..+|---++.+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 555555666666666666666666666666655 35555665555555554
No 375
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=28.41 E-value=70 Score=20.28 Aligned_cols=46 Identities=15% Similarity=0.069 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 045403 46 MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHK 93 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 93 (144)
...+..+.+.++.. +.|-.-.-.+|.++...|++++|.+++.++.+
T Consensus 15 l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 15 TALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444432 12333345678888889999988888887753
No 376
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=28.28 E-value=35 Score=22.85 Aligned_cols=108 Identities=11% Similarity=-0.075 Sum_probs=55.6
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKY---DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD---YNTFHILIKYFRK 77 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~ 77 (144)
..++.|+.+.+..++.. .+..+ |..- .+.+...+..|+.+-+..++ +.|..++ ..-++. +...+.
T Consensus 30 ~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g-~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~ 100 (351)
T 3utm_A 30 EAARSGNEEKLMALLTP---LNVNCHASDGRK-STPLHLAAGYNRVRIVQLLL----QHGADVHAKDKGGLVP-LHNACS 100 (351)
T ss_dssp HHHHHTCHHHHHHHCCT---TTTTCCCSSTTC-CCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHh---cCCCcccCCCCC-CCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCcH-HHHHHH
Confidence 34567888877777653 23332 2222 23455556677766555444 4454433 222333 344456
Q ss_pred hCcHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 78 EKMYMLAYRTMVDMHKKGHQPE---EELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 78 ~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
.|+.+ +++.+.+.|..++ ...++.|..+ +..|+.+-+..+++.
T Consensus 101 ~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~ 146 (351)
T 3utm_A 101 YGHYE----VTELLLKHGACVNAMDLWQFTPLHEA-ASKNRVEVCSLLLSH 146 (351)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH-HHTTCHHHHHHHHHT
T ss_pred CCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHHHc
Confidence 67755 4445555555443 2233344444 566777766666553
No 377
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.02 E-value=1.2e+02 Score=19.44 Aligned_cols=122 Identities=7% Similarity=-0.100 Sum_probs=72.6
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCC-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYD-----------------VVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN 66 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~-----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 66 (144)
+|-+..+...|...++......+..| ..-|+.+-..+.+.|+.++|...+..--... |=..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~--~lf~ 148 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS--FLFS 148 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc--cccc
Confidence 45567888999999888886555422 2567777788888899999998887643221 2111
Q ss_pred HHH----------------HHHHHHHHhC----cHHHHHHHHH----HHHH--CCCCCCHHHHHH--HHHHHhccCChHH
Q 045403 67 TFH----------------ILIKYFRKEK----MYMLAYRTMV----DMHK--KGHQPEEELCSS--LIFHLGKMRAHSE 118 (144)
Q Consensus 67 ~~~----------------~li~~~~~~g----~~~~a~~~~~----~m~~--~~~~~~~~~~~~--l~~~~~~~g~~~~ 118 (144)
+.. +++.+ +.| .......+.+ +..+ .+..|...+|-. ....|...|..++
T Consensus 149 ~vEnliyeN~vp~~~d~~~i~~~~--~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~ 226 (242)
T 3kae_A 149 PVENLLLENKVPQKRDKENVRQTG--RRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDK 226 (242)
T ss_dssp HHHHHHHTTCCCCCC-------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHhhcCCCcccchHHHHhhh--hccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchh
Confidence 111 11111 111 1111222222 2221 246788777654 4455778999999
Q ss_pred HHHHHHHhhhc
Q 045403 119 ALCLQHVKDIA 129 (144)
Q Consensus 119 a~~l~~~m~~~ 129 (144)
...+|..++..
T Consensus 227 s~~lf~~lR~k 237 (242)
T 3kae_A 227 SKACFELVRRK 237 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998863
No 378
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.81 E-value=25 Score=22.58 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=12.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCC
Q 045403 38 CAYCRTGDMESVIHVMRKLDELAIS 62 (144)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~g~~ 62 (144)
...++.|+.+.+..+++.+.+.|..
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3344555555555555555555443
No 379
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=27.74 E-value=1.5e+02 Score=20.44 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=69.1
Q ss_pred hccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHH---HHHHhcCCHHHHHHH----HHHhhhCCCCCCHHHHHHHHHHHH
Q 045403 6 CRGGCFEEAKQLARDFEAKYDK--YDVVLLNSML---CAYCRTGDMESVIHV----MRKLDELAISPDYNTFHILIKYFR 76 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li---~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~li~~~~ 76 (144)
...|++=+|.+.++..-.+-+. .-......+- ..+.++|+...|-++ .+.+.+.++++|......++..+.
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456666666665554332111 1112222222 224556776655554 555667789999998888888876
Q ss_pred HhCcHH-HHHHHHHHHH----HCCC--CCCHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 77 KEKMYM-LAYRTMVDMH----KKGH--QPEEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 77 ~~g~~~-~a~~~~~~m~----~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
....-+ .-.++++++. +.|- .-++..+..+-..|.+.|++.+|..-|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 643211 1123333333 3332 2377888899999999999999888663
No 380
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=27.30 E-value=92 Score=21.11 Aligned_cols=47 Identities=9% Similarity=0.086 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 045403 45 DMESVIHVMRKLDELA-ISPDYNTFHILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 45 ~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 91 (144)
++..+..++..|.... -.|+....-.++.+|.+.-+-.+|.+.+.+.
T Consensus 188 RF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 188 RFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 3444445555555432 2355555555555555555555555555544
No 381
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=26.87 E-value=65 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.173 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 045403 31 VLLNSMLCAYCRTGDMESVIHVMRKLD 57 (144)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (144)
..-|.+++-|...|+++.|.++++++-
T Consensus 35 ~~~n~l~R~FL~~gkl~AAr~l~~rlp 61 (270)
T 3cqc_A 35 KQGNAIMRKFLASKKHEAAKEVFVKIP 61 (270)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHCC
Confidence 345789999999999999999999753
No 382
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=26.65 E-value=83 Score=17.53 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=20.2
Q ss_pred HHhccCChHHHHHHHHHhhhcCCCCcHHHHHHhh
Q 045403 109 HLGKMRAHSEALCLQHVKDIAKDRCAMPFMRKFF 142 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~ 142 (144)
-+.+.+++.+|..+|+.............++.||
T Consensus 62 ~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fy 95 (106)
T 2vkj_A 62 DLFETANYGEALVFFEKALNLSDNEEIKKIASFY 95 (106)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhcchhHHHHHHHHHHccccCHHHHHHHHHH
Confidence 3566777788888887776544444444444443
No 383
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.37 E-value=87 Score=21.00 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=5.2
Q ss_pred HHHHHHCCCCCC
Q 045403 88 MVDMHKKGHQPE 99 (144)
Q Consensus 88 ~~~m~~~~~~~~ 99 (144)
.+-+.+.|..++
T Consensus 289 v~~Ll~~GAd~n 300 (337)
T 4g8k_A 289 AELLCKRGASTD 300 (337)
T ss_dssp HHHHHTTSCSST
T ss_pred HHHHHHCCCCCC
Confidence 333444454444
No 384
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.19 E-value=1.9e+02 Score=20.96 Aligned_cols=89 Identities=11% Similarity=-0.002 Sum_probs=60.1
Q ss_pred cCCHHHHHHHHHHHHhcCC---------CC----------------CHHHHHHHHHHHH---hcCCHHHHHHHHHHhhhC
Q 045403 8 GGCFEEAKQLARDFEAKYD---------KY----------------DVVLLNSMLCAYC---RTGDMESVIHVMRKLDEL 59 (144)
Q Consensus 8 ~g~~~~a~~~~~~m~~~~~---------~p----------------~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~ 59 (144)
.|+..++..+++.+..... .+ +...+-.+|+++. +.++.+.|...+.+|.+.
T Consensus 205 ~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~ 284 (447)
T 3pvs_A 205 NGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITA 284 (447)
T ss_dssp CSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 5788888888877654321 10 1112223455554 457899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHCCC
Q 045403 60 AISPDYNTFHILIKYFRKEKM-----YMLAYRTMVDMHKKGH 96 (144)
Q Consensus 60 g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~ 96 (144)
|..|....-..++.++-..|. +..|...++.....|.
T Consensus 285 Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 285 GGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp TCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred CCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 998888887777877777774 3446666777776664
No 385
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=26.03 E-value=59 Score=17.26 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcCCC
Q 045403 11 FEEAKQLARDFEAKYDK 27 (144)
Q Consensus 11 ~~~a~~~~~~m~~~~~~ 27 (144)
+.+|.++.++|...|+.
T Consensus 38 YnRAArlid~lE~~GiV 54 (73)
T 2ve8_A 38 YNRAARMIEAMEMAGVV 54 (73)
T ss_dssp HHHHHHHHHHHHHTTSB
T ss_pred hHHHHHHHHHHHHCCcC
Confidence 56777888888877763
No 386
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=25.61 E-value=1.4e+02 Score=19.15 Aligned_cols=14 Identities=0% Similarity=-0.014 Sum_probs=6.1
Q ss_pred hccCCHHHHHHHHH
Q 045403 6 CRGGCFEEAKQLAR 19 (144)
Q Consensus 6 ~~~g~~~~a~~~~~ 19 (144)
+|+.+.+....+.+
T Consensus 64 aka~~~~~~~~~~~ 77 (221)
T 3ibx_A 64 VKACDEAVMREFSN 77 (221)
T ss_dssp HHCCSHHHHHHHHH
T ss_pred HhCCCHHHHHHHHH
Confidence 34455444444333
No 387
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=24.52 E-value=56 Score=14.33 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=12.1
Q ss_pred HHHHHHhCcHHHHHHHHHHHH
Q 045403 72 IKYFRKEKMYMLAYRTMVDMH 92 (144)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~m~ 92 (144)
+.-|...|+.++|..+-.+++
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 344556666666666655554
No 388
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=24.51 E-value=50 Score=22.24 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhCCCC-------CCHHHHHHHHHHHHHhC---------cHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 045403 46 MESVIHVMRKLDELAIS-------PDYNTFHILIKYFRKEK---------MYMLAYRTMVDMHKKGHQP-EEELCSSLIF 108 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~-------p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~ 108 (144)
.+.|..++.+|--..++ -...-+..+.++|.+.| +.+--..+++...+.|++. =+++|+++|+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 57788888888654332 34455888888888877 4555667777777777632 3457888886
Q ss_pred HHhccCChHHHHHHHHHhhh
Q 045403 109 HLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~~~m~~ 128 (144)
--.-.-+.+.+.+++..+++
T Consensus 250 k~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 65555677788888777653
No 389
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=24.28 E-value=2.8e+02 Score=22.27 Aligned_cols=78 Identities=10% Similarity=-0.016 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhc----CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHH
Q 045403 9 GCFEEAKQLARDFEAK----YDKYDVV--LLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYM 82 (144)
Q Consensus 9 g~~~~a~~~~~~m~~~----~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 82 (144)
...++|.+.|++.... .++||.. +|+..+ |.-++-..+++..++. .+..--..++.+++-..+..
T Consensus 697 ~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~------g~~~~~~~l~~~y~~~---~~~~ek~~ll~aL~c~~~~~ 767 (897)
T 2xdt_A 697 PCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA------QSTEGWDFLYSKYQFS---LSSTEKSQIEFALCRTQNKE 767 (897)
T ss_dssp HHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT------TSHHHHHHHHHHHTTC---CCHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec------CCHHHHHHHHHHHHcc---CCHHHHHHHHHHhccCCCHH
Confidence 3467788888887654 2445543 233222 6555555666666553 34445567788888888877
Q ss_pred HHHHHHHHHHHCC
Q 045403 83 LAYRTMVDMHKKG 95 (144)
Q Consensus 83 ~a~~~~~~m~~~~ 95 (144)
...++++.....+
T Consensus 768 ~l~~~L~~~~~~~ 780 (897)
T 2xdt_A 768 KLQWLLDESFKGD 780 (897)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCCC
Confidence 7777777766533
No 390
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=24.03 E-value=1.1e+02 Score=17.70 Aligned_cols=48 Identities=8% Similarity=0.012 Sum_probs=27.1
Q ss_pred HHHHHHHHHhc--CCC-----------CCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCC
Q 045403 14 AKQLARDFEAK--YDK-----------YDVVLLNSMLCAYCRTG---DMESVIHVMRKLDELAI 61 (144)
Q Consensus 14 a~~~~~~m~~~--~~~-----------p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~ 61 (144)
..++++.|... |++ |+.++=+-+++.+.+++ .-++|..+-+.+.+.|+
T Consensus 8 l~~L~~~m~~~~~Gv~i~~rr~~~k~y~~cF~GsdlVdWL~~~~~~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 8 LHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENF 71 (120)
T ss_dssp HHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCccCCCeeeeeEEccEEccceeehHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 55667777642 343 45555556666655544 34566666666665553
No 391
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=24.02 E-value=3e+02 Score=22.57 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHhccCChH
Q 045403 99 EEELCSSLIFHLGKMRAHS 117 (144)
Q Consensus 99 ~~~~~~~l~~~~~~~g~~~ 117 (144)
+..--...++++.+.|...
T Consensus 453 ~~~~~~~~LkaLGN~g~p~ 471 (1056)
T 1lsh_A 453 KEEEIVLALKALGNAGQPN 471 (1056)
T ss_dssp CHHHHHHHHHHHHHHTCGG
T ss_pred ChHHHHHHHHHhhccCChh
Confidence 3333444556666666543
No 392
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=23.97 E-value=49 Score=21.35 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=29.6
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGD 45 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 45 (144)
.-.|+-+.+.+++++..+.|.+|....-+.++.+..+-|+
T Consensus 13 l~~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~~VG~ 52 (215)
T 3ezx_A 13 IVNQNVAGTPELCKEALAAGVPALDIITKGLSVGMKIVGD 52 (215)
T ss_dssp HHTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888777666677777665554
No 393
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=23.63 E-value=63 Score=18.97 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=13.4
Q ss_pred hhccCCHHHHHHHHHHHHh
Q 045403 5 FCRGGCFEEAKQLARDFEA 23 (144)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~ 23 (144)
.++.|++++|.+++++..+
T Consensus 47 ~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 47 AMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3567888888887776654
No 394
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.52 E-value=38 Score=22.03 Aligned_cols=116 Identities=9% Similarity=0.015 Sum_probs=64.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHH--hcCCHHHHHHHHHHhhh---------CCCC-C
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKY-------DVVLLNSMLCAYC--RTGDMESVIHVMRKLDE---------LAIS-P 63 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p-------~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~---------~g~~-p 63 (144)
...++.|+.+.+..+++...+.+... |..-++.|..+.. +.|+.+-+..+++.-.. .++. .
T Consensus 18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~ 97 (273)
T 2pnn_A 18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDS 97 (273)
T ss_dssp HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCST
T ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccc
Confidence 34567788888888888766555432 3455666666664 35777777777766322 1111 2
Q ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCCCCCCHH-----------------HHHHHHHHHhccCChHHHHHHHH
Q 045403 64 DYNTFHILIKYFRKEKMYMLAYRTMVDMHKKGHQPEEE-----------------LCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
|..-++.|.. -+..|+.+-+ +.+.+.|..++.. ..+.|..+ +..|+.+-+..+++
T Consensus 98 d~~g~tpL~~-A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A-~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 98 YYKGQTALHI-AIERRNMTLV----TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA-ACTNQLAIVKFLLQ 169 (273)
T ss_dssp TTTTCCHHHH-HHHTTCHHHH----HHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHH-HHTTCHHHHHHHHH
T ss_pred cCCCCCHHHH-HHHcCCHHHH----HHHHHCCCCcCccccccccccccccccccCCCCHHHHH-HHcCCHHHHHHHHh
Confidence 2233344444 3466776544 4444455444322 33444444 56677776666665
No 395
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=23.44 E-value=1.2e+02 Score=17.68 Aligned_cols=111 Identities=8% Similarity=-0.026 Sum_probs=49.4
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHHhCc
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNT--FHILIKYFRKEKM 80 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~ 80 (144)
...++.|+.+.+..+++.-..- -.+|..-++. +...+..|+.+-+..++ +.|..++... -.+.+...+..|.
T Consensus 8 ~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~-L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 8 HQLAAQGEMLYLATRIEQENVI-NHTDEEGFTP-LMWAAAHGQIAVVEFLL----QNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCH-HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCH-HHHHHHCCCHHHHHHHH----HcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 4456778877777666542110 0122223333 44445566655444444 3344333211 1123344445666
Q ss_pred HHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCChHHHHHHHH
Q 045403 81 YMLAYRTMVDMHKKGHQP---EEELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
.+-+..++ +.|..+ +....+.+..+ +..|+.+-+..+++
T Consensus 82 ~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~ 123 (167)
T 3v31_A 82 TDIVKMLL----DCGVDVNEYDWNGGTPLLYA-VHGNHVKCVKMLLE 123 (167)
T ss_dssp HHHHHHHH----HHTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHH----HCCCCCCcCCCCCCCHHHHH-HHcCCHHHHHHHHH
Confidence 55443333 333333 22233344433 44566665555554
No 396
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=22.95 E-value=1.3e+02 Score=18.06 Aligned_cols=104 Identities=12% Similarity=0.012 Sum_probs=52.8
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHHhC
Q 045403 6 CRGGCFEEAKQLARDFEAKYDKYDV---VLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD---YNTFHILIKYFRKEK 79 (144)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g 79 (144)
++.|+.+.+..+++ .|..||. .-++. +...+..+..+.+..++ +.|..++ ..-++.|..+ +..|
T Consensus 12 a~~G~~~~v~~Ll~----~Gadvn~~d~~g~t~-l~~a~~~~~~~~~~~ll----~~gad~~~~d~~g~TpLh~A-~~~g 81 (169)
T 4gpm_A 12 AENGNKDRVKDLIE----NGADVNASDSDGRTP-LHHAAENGHKEVVKLLI----SKGADVNAKDSDGRTPLHHA-AENG 81 (169)
T ss_dssp HHTTCHHHHHHHHH----TTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHH-HHTT
T ss_pred HHcCCHHHHHHHHH----CCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHH----hcccchhhhccCCCCHHHHH-HHcC
Confidence 46788877766654 4555543 22233 33445566655554443 3444332 2223344333 4566
Q ss_pred cHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHH
Q 045403 80 MYMLAYRTMVDMHKKGHQPE---EELCSSLIFHLGKMRAHSEALCLQH 124 (144)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~l~~ 124 (144)
+.+ +.+.+.+.|..++ ..-++.|..+ ++.|+.+-+.-+++
T Consensus 82 ~~~----~v~~Ll~~gadvn~~d~~G~TpLh~A-~~~g~~~~v~~Ll~ 124 (169)
T 4gpm_A 82 HKE----VVKLLISKGADVNAKDSDGRTPLHHA-AENGHKEVVKLLIS 124 (169)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHH
T ss_pred CHH----HHHHHHHCcCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHHH
Confidence 654 4444555565443 3334455555 45677765555554
No 397
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.88 E-value=1.6e+02 Score=19.01 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=45.1
Q ss_pred HHHHHH---hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHCCC
Q 045403 36 MLCAYC---RTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM-----YMLAYRTMVDMHKKGH 96 (144)
Q Consensus 36 li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~ 96 (144)
+|+++- +.++.+.|+-.+-+|.+.|..|..+.-..++-+.--.|. +..|...++.....|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 455553 457899999999999999998888888888877777774 3345666666666664
No 398
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=22.76 E-value=41 Score=21.60 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=23.8
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHHhCcHHHHHHHH
Q 045403 41 CRTGDMESVIHVMRKLDELAISPDYNT--FHILIKYFRKEKMYMLAYRTM 88 (144)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~ 88 (144)
+..+......++.+.+.+.|..++... -.+.+...++.|..+-+..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 344544444566666666666544321 123344445667755443333
No 399
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=22.68 E-value=1.1e+02 Score=17.09 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhC
Q 045403 46 MESVIHVMRKLDEL 59 (144)
Q Consensus 46 ~~~a~~~~~~m~~~ 59 (144)
.++|+++..-|--+
T Consensus 13 IdKALDFI~~M~tS 26 (115)
T 2es9_A 13 IEKALDFIGGMNTS 26 (115)
T ss_dssp HHHHHHHHHTSCTT
T ss_pred HHHHHHHhcccccC
Confidence 35566666655433
No 400
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=22.11 E-value=79 Score=20.35 Aligned_cols=40 Identities=3% Similarity=-0.184 Sum_probs=30.7
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCc
Q 045403 41 CRTGDMESVIHVMRKLDELAISPDYNTFHILIKYFRKEKM 80 (144)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 80 (144)
...++-+.+.+++++..+.|..|....-..++.+..+.|+
T Consensus 13 l~~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~~VG~ 52 (215)
T 3ezx_A 13 IVNQNVAGTPELCKEALAAGVPALDIITKGLSVGMKIVGD 52 (215)
T ss_dssp HHTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999988887777777777777777663
No 401
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=22.09 E-value=86 Score=17.74 Aligned_cols=44 Identities=16% Similarity=-0.002 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 045403 46 MESVIHVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDM 91 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 91 (144)
.+.+.+++..=.+.. -...|...|+.++.+.+.-+-|..+....
T Consensus 57 ~eq~~~mL~~W~~r~--G~~AT~~~L~~AL~~~~~~dvae~l~~~~ 100 (110)
T 1wxp_A 57 KMRAKQLLVAWQDQE--GVHATPENLINALNKSGLSDLAESLTNDN 100 (110)
T ss_dssp HHHHHHHHHHHHHHH--GGGCCHHHHHHHHHHTTCHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHcCcHHHHHHHHHHh
Confidence 355555555443321 12257778888888888777666554433
No 402
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=21.96 E-value=48 Score=22.04 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhhCCCC-------CCHHHHHHHHHHHHHhC---------cHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 045403 46 MESVIHVMRKLDELAIS-------PDYNTFHILIKYFRKEK---------MYMLAYRTMVDMHKKGHQ-PEEELCSSLIF 108 (144)
Q Consensus 46 ~~~a~~~~~~m~~~g~~-------p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~ 108 (144)
.+.|..++.+|--..++ -...-+..+.++|.+.| +.+--..+++...+.|++ .=+++|+++|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 57888888888654332 34456888888998887 455556677777777753 23457888887
Q ss_pred HHhccCChHHHHHHHHHhhh
Q 045403 109 HLGKMRAHSEALCLQHVKDI 128 (144)
Q Consensus 109 ~~~~~g~~~~a~~l~~~m~~ 128 (144)
--.-.-+.+.+.+++..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 65666678888888887653
No 403
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.71 E-value=34 Score=19.88 Aligned_cols=110 Identities=9% Similarity=0.041 Sum_probs=56.6
Q ss_pred hhhhccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHHh
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPD---YNTFHILIKYFRKE 78 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 78 (144)
...++.|+.+.+..+++. ....+ ..|..-++.+ .. +..|+.+-+..++ +.|..++ ..-.+. +...+..
T Consensus 7 ~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L-~~-~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~ 78 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTAL-QV-MMFGSTAIALELL----KQGASPNVQDTSGTSP-VHDAART 78 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHH-HH-SCTTCHHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHH-HH-HHcCCHHHHHHHH----HCCCCCCCcCCCCCCH-HHHHHHc
Confidence 345677888888888776 21111 1233333344 44 7778876555544 3444333 223333 3344456
Q ss_pred CcHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCChHHHHHHHHH
Q 045403 79 KMYMLAYRTMVDMHKKGHQP---EEELCSSLIFHLGKMRAHSEALCLQHV 125 (144)
Q Consensus 79 g~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~l~~~ 125 (144)
|+.+- ++.+.+.|..+ +....+.+..+ ++.|+.+-+.-+++.
T Consensus 79 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 79 GFLDT----LKVLVEHGADVNVPDGTGALPIHLA-VQEGHTAVVSFLAAE 123 (156)
T ss_dssp TCHHH----HHHHHHTTCCSCCCCTTSCCHHHHH-HHHTCHHHHHHHHTT
T ss_pred CcHHH----HHHHHHcCCCCCCcCCCCCcHHHHH-HHhChHHHHHHHHhc
Confidence 77553 44444555443 33334444444 456777766655544
No 404
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.71 E-value=2.1e+02 Score=19.99 Aligned_cols=17 Identities=12% Similarity=-0.183 Sum_probs=10.4
Q ss_pred ccCCHHHHHHHHHHHHh
Q 045403 7 RGGCFEEAKQLARDFEA 23 (144)
Q Consensus 7 ~~g~~~~a~~~~~~m~~ 23 (144)
+.|++++|...|+....
T Consensus 126 t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 126 KLNKPDIAIECFREAIY 142 (325)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 45666666666666543
No 405
>2ets_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.25A {Staphylococcus aureus subsp} SCOP: a.24.26.1
Probab=21.48 E-value=1.2e+02 Score=18.04 Aligned_cols=36 Identities=6% Similarity=0.146 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 045403 29 DVVLLNSMLCAYCRTGDMESVIHVMRKLDELAISPDYN 66 (144)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 66 (144)
.....|-+|.-+.. ..+++...|++.++.|..||..
T Consensus 9 ~~~~~~~~i~~L~~--~~~~~~~ry~~~ke~~~e~DFy 44 (128)
T 2ets_A 9 HHHHMNDLVESLIY--EVNNMQQNFENVKSQQQDHDFY 44 (128)
T ss_dssp CTTHHHHHHHHHHH--HHHHHHHHHHHHHHHTCCCCTT
T ss_pred hHHhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCcc
Confidence 33455666666555 5677888888888887777654
No 406
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.27 E-value=34 Score=21.35 Aligned_cols=49 Identities=10% Similarity=-0.046 Sum_probs=21.9
Q ss_pred hhhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045403 4 AFCRGGCFEEAKQLARDFEAKYDKYDVVLLNSMLCAYCRTGDMESVIHVM 53 (144)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 53 (144)
..++.|+.+.+..+++.-...-..+|..-++.+ ...+..|+.+-+..++
T Consensus 8 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll 56 (228)
T 2dzn_A 8 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPL-HWSVSFQAHEITSFLL 56 (228)
T ss_dssp HHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHH-HHHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcCccccccCCCCCCCHH-HHHHHcCCHHHHHHHH
Confidence 345667776666666543221111233323333 3334455554443333
No 407
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.17 E-value=2.3e+02 Score=20.09 Aligned_cols=82 Identities=12% Similarity=0.229 Sum_probs=53.3
Q ss_pred hhhhccCCHHHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC
Q 045403 3 SAFCRGGCFEEAKQLARDFEAKY----------------DKYDVVLLNSMLCAYCRTGDMESVIHVMRKLDEL-----AI 61 (144)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~~----------------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~ 61 (144)
.++....+.+++.+++++....- ..+-......+.+.|...++.++|..++++.... ++
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 45567789999999998774321 1234566677788889999999999999887631 34
Q ss_pred CCCH--HHHHHHHHHHHHhCcHHHH
Q 045403 62 SPDY--NTFHILIKYFRKEKMYMLA 84 (144)
Q Consensus 62 ~p~~--~~~~~li~~~~~~g~~~~a 84 (144)
.|.. ..|......+...+++..+
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~ 188 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSF 188 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3322 2244455555555555443
No 408
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.14 E-value=75 Score=14.54 Aligned_cols=26 Identities=4% Similarity=-0.225 Sum_probs=18.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhh
Q 045403 102 LCSSLIFHLGKMRAHSEALCLQHVKD 127 (144)
Q Consensus 102 ~~~~l~~~~~~~g~~~~a~~l~~~m~ 127 (144)
...-.|.+-++.|+++.+..+=.+++
T Consensus 12 aiEQqiyvA~seGd~etv~~Le~QL~ 37 (40)
T 1gp8_A 12 AIRKQMDAAASKGDVETYRKLKAKLK 37 (40)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34456777788888888887777764
No 409
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=20.80 E-value=72 Score=14.23 Aligned_cols=26 Identities=4% Similarity=0.148 Sum_probs=13.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045403 85 YRTMVDMHKKGHQPEEELCSSLIFHLGKM 113 (144)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 113 (144)
..+|+++.+.| |..+-.+++++|.++
T Consensus 9 ~~~fk~iY~~g---ddd~kram~KS~~eS 34 (35)
T 2jtt_C 9 MNVLKKIYEDG---DDDMKRTINKAWVES 34 (35)
T ss_dssp HHHHHHHHTTC---CSSHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHhhc
Confidence 34555555443 344555566655543
No 410
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.75 E-value=77 Score=21.55 Aligned_cols=14 Identities=7% Similarity=0.003 Sum_probs=6.8
Q ss_pred hccCChHHHHHHHH
Q 045403 111 GKMRAHSEALCLQH 124 (144)
Q Consensus 111 ~~~g~~~~a~~l~~ 124 (144)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455554444444
No 411
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.68 E-value=1e+02 Score=15.92 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 045403 33 LNSMLCAYCRTGDMESVIHVMRKLDELAISPDYNTFHILIKYF 75 (144)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 75 (144)
++-+++.+++-.-.+.+.-.+++..+.|. .+..+|---++..
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~L 46 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 34444444444445555555555555543 3344444333333
No 412
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=20.36 E-value=93 Score=22.14 Aligned_cols=45 Identities=7% Similarity=-0.052 Sum_probs=34.0
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHCC
Q 045403 51 HVMRKLDELAISPDYNTFHILIKYFRKEKMYMLAYRTMVDMHKKG 95 (144)
Q Consensus 51 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 95 (144)
++++.+.+.|+.|...++.=++..+.+.=.++.+..+++.+...|
T Consensus 217 ~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 217 DLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 466677777888888887777777777777888888888877544
No 413
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=20.28 E-value=1.1e+02 Score=17.11 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhCCCCCCHHH
Q 045403 47 ESVIHVMRKLDELAISPDYNT 67 (144)
Q Consensus 47 ~~a~~~~~~m~~~g~~p~~~~ 67 (144)
+...+-.++++..|+.||...
T Consensus 20 ~~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 20 GEIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHhcCCCCCeEE
Confidence 345555677778888888754
No 414
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=20.20 E-value=1.4e+02 Score=21.18 Aligned_cols=45 Identities=2% Similarity=-0.198 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhhcC
Q 045403 86 RTMVDMHKKGHQPEEELCSSLIFHLGKMRAHSEALCLQHVKDIAK 130 (144)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~m~~~~ 130 (144)
++++.+.+.|+.|....+..++..|.+.=.++.+.++++.+-...
T Consensus 217 ~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 217 DLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 356667777999999999999999999889999999999876643
No 415
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.05 E-value=96 Score=15.37 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=16.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHh
Q 045403 18 ARDFEAKYDKYDVVLLNSMLCAYCRTGD--MESVIHVMRKL 56 (144)
Q Consensus 18 ~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m 56 (144)
++++.+.|.++. -...|..+.|. ++.|++.+.+|
T Consensus 13 lq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 13 LQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 444555555543 22333444443 56666655555
Done!