BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045405
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
Query: 29 SDPDPLQDVCIADLNA-TISINGFPCKPASNVXXXXXXXXXXXXXXXXXV-FKRAVTFGD 86
SDPDPLQD C+ADL+ +S+NG CKP S AVT D
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 87 VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXX---XXXXXXXFFS 143
V +P NT GV++ R+D GG NPPH HPR TE G+ +S
Sbjct: 61 VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLT 203
+V+ G+ F+IPR L+HFQ NVG A + FN+QNPG+ TLF + PP+P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 204 KSFRVGDDVINTIRAARAQSS 224
K+ RV V+ +++ A S
Sbjct: 181 KALRVEAGVVELLKSKFAGGS 201
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
Query: 29 SDPDPLQDVCIADLNA-TISINGFPCKPASNVXXXXXXXXXXXXXXXXXV-FKRAVTFGD 86
SDPDPLQD C+ADL+ +S+NG CKP S AVT D
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 87 VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXX---XXXXXXXFFS 143
V +P NT GV++ R+D GG NPPH HPR TE G+ +S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLT 203
+V+ G+ F+IPR L+HFQ NVG A + FN+QNPG+ TLF + PP+P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 204 KSFRVGDDVINTIRAARAQSS 224
K+ RV V+ +++ A S
Sbjct: 181 KALRVEAGVVELLKSKFAGGS 201
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
Query: 29 SDPDPLQDVCIADLNA-TISINGFPCKPASNVXXXXXXXXXXXXXXXXXV-FKRAVTFGD 86
+DPDPLQD C+ADL+ +S+NG CKP S AVT D
Sbjct: 1 TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 87 VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXX---XXXXXXXFFS 143
V +P NT GV++ R+D GG NPPH HPR TE G+ +S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLT 203
+V+ G+ F+IPR L+HFQ NVG A + FN+QNPG+ TLF + PP+P VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 204 KSFRVGDDVINTIRAARAQSS 224
K+ RV V+ +++ A S
Sbjct: 181 KALRVEAGVVELLKSKFAGGS 201
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 142 FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEV 201
F L G++ ++P+ V + G E +F T + VS I +F +P+EV
Sbjct: 411 FDGELRRGQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIKDVFRA---IPSEV 465
Query: 202 LTKSFRVGDDVINTIR 217
L+ S+ +G + ++
Sbjct: 466 LSNSYNLGQSQVRQLK 481
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 142 FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEV 201
F L G++ ++P+ V + G E +F T + VS I +F +P+EV
Sbjct: 412 FDGELRRGQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIKDVFRA---IPSEV 466
Query: 202 LTKSFRVGDDVINTIR 217
L+ S+ +G + ++
Sbjct: 467 LSNSYNLGQSQVRQLK 482
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 149 GKVFLIPRALVHFQLNVGNEPATFIPIFN 177
G V +P A+ H+ N+G+EP F+ IF
Sbjct: 308 GDVGYVPFAMGHYVENIGDEPLVFLEIFK 336
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 149 GKVFLIPRALVHFQLNVGNEPATFIPIFN 177
G V +P A+ H+ N+G+EP F+ IF
Sbjct: 308 GDVGYVPFAMGHYVENIGDEPLVFLEIFK 336
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 149 GKVFLIPRALVHFQLNVGNEPATFIPIFN 177
G V +P A+ H+ N+G+EP F+ IF
Sbjct: 306 GDVGYVPFAMGHYVENIGDEPLVFLEIFK 334
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 149 GKVFLIPRALVHFQLNVGNEPATFIPIFN 177
G V +P A+ H+ N+G+EP F+ IF
Sbjct: 303 GDVGYVPFAMGHYVENIGDEPLVFLEIFK 331
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 149 GKVFLIPRALVHFQLNVGNEPATFIPIFN 177
G V +P A+ H+ N+G+EP F+ IF
Sbjct: 308 GDVGYVPFAMGHYVENIGDEPLVFLEIFK 336
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 149 GKVFLIPRALVHFQLNVGNEPATFIPIFN 177
G V +P A+ H+ N+G+EP F+ IF
Sbjct: 308 GDVGYVPFAMGHYVENIGDEPLVFLEIFK 336
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 149 GKVFLIPRALVHFQLNVGNEPATFIPIFN 177
G V +P A+ H+ N+G+EP F+ IF
Sbjct: 308 GDVGYVPFAMGHYVENIGDEPLVFLEIFK 336
>pdb|1QXJ|A Chain A, Crystal Structure Of Native Phosphoglucose Isomerase From
Pyrococcus Furiosus
pdb|1QXJ|B Chain B, Crystal Structure Of Native Phosphoglucose Isomerase From
Pyrococcus Furiosus
pdb|1QXR|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phosphoarabinonate
pdb|1QXR|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phosphoarabinonate
pdb|1QY4|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Gluconate
6-Phosphate
pdb|1QY4|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Gluconate
6-Phosphate
Length = 189
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 146 LTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176
+ PG V +P H +N+G+EP F+ I+
Sbjct: 122 MEPGTVVYVPPYWAHRTVNIGDEPFIFLAIY 152
>pdb|1X7N|A Chain A, The Crystal Structure Of Pyrococcus Furiosus
Phosphoglucose Isomerase With Bound
5-Phospho-D-Arabinonate And Manganese
pdb|1X8E|A Chain A, Crystal Structure Of Pyrococcus Furiosus Phosphoglucose
Isomerase Free Enzyme
pdb|1X8E|B Chain B, Crystal Structure Of Pyrococcus Furiosus Phosphoglucose
Isomerase Free Enzyme
Length = 190
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 146 LTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176
+ PG V +P H +N+G+EP F+ I+
Sbjct: 123 MEPGTVVYVPPYWAHRTVNIGDEPFIFLAIY 153
>pdb|2GC0|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phospho-D-
Arabinonohydroxamate And Zinc
pdb|2GC0|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phospho-D-
Arabinonohydroxamate And Zinc
pdb|2GC1|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Sorbitol 6-Phosphate
And Zinc
pdb|2GC1|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Sorbitol 6-Phosphate
And Zinc
pdb|2GC2|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Fructose 6-Phosphate
And Zinc
pdb|2GC2|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Fructose 6-Phosphate
And Zinc
pdb|2GC3|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Mannose 6-Phosphate
And Zinc
pdb|2GC3|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Mannose 6-Phosphate
And Zinc
Length = 188
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 146 LTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176
+ PG V +P H +N+G+EP F+ I+
Sbjct: 123 MEPGTVVYVPPYWAHRTVNIGDEPFIFLAIY 153
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 149 GKVFLIPRALVHFQLNVGNEPATFIPIFN 177
G V +P A H+ N+G+EP F+ IF
Sbjct: 308 GDVGYVPFAXGHYVENIGDEPLVFLEIFK 336
>pdb|1X82|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus With Bound 5-Phospho-D-Arabinonate
Length = 190
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 148 PGKVFLIPRALVHFQLNVGNEPATFIPIF 176
PG V +P H +N+G+EP F+ I+
Sbjct: 125 PGTVVYVPPYWAHRTVNIGDEPFIFLAIY 153
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 141 FFSKVL--TPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTP-PV 197
F K+L P I +AL H L GN P I +++ + DSI T +D P P+
Sbjct: 390 FIRKLLLADPNTRMTIHQALEHPWLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPL 449
Query: 198 P 198
P
Sbjct: 450 P 450
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 141 FFSKVL--TPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTP-PV 197
F K+L P I +AL H L GN P I +++ + DSI T +D P P+
Sbjct: 284 FIRKLLLADPNTRMTIHQALEHPWLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPL 343
Query: 198 P 198
P
Sbjct: 344 P 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,722,562
Number of Sequences: 62578
Number of extensions: 184483
Number of successful extensions: 324
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 21
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)