Query 045405
Match_columns 240
No_of_seqs 275 out of 1862
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 5.4E-27 1.2E-31 216.8 20.0 163 50-219 200-362 (367)
2 PLN00212 glutelin; Provisional 99.9 3.6E-25 7.9E-30 210.0 18.7 149 72-224 322-473 (493)
3 PF00190 Cupin_1: Cupin; Inte 99.9 1.9E-24 4.2E-29 175.1 12.5 134 67-213 2-143 (144)
4 PLN00212 glutelin; Provisional 99.9 2.8E-23 6E-28 197.2 18.2 155 75-234 58-265 (493)
5 TIGR03404 bicupin_oxalic bicup 99.9 4.8E-23 1E-27 190.6 18.0 147 63-220 37-186 (367)
6 smart00835 Cupin_1 Cupin. This 99.9 1.3E-20 2.9E-25 153.0 17.7 135 75-213 7-145 (146)
7 COG2140 Thermophilic glucose-6 99.8 2E-18 4.4E-23 146.7 13.2 151 60-221 49-201 (209)
8 PF07883 Cupin_2: Cupin domain 99.4 4.5E-13 9.7E-18 94.6 7.9 70 102-176 2-71 (71)
9 COG1917 Uncharacterized conser 99.4 8.1E-12 1.8E-16 99.3 11.4 85 89-178 34-118 (131)
10 COG0662 {ManC} Mannose-6-phosp 99.3 1.9E-11 4.1E-16 97.3 12.3 82 96-182 34-115 (127)
11 PRK04190 glucose-6-phosphate i 99.3 2.9E-11 6.3E-16 102.8 13.6 88 91-178 61-156 (191)
12 PRK13290 ectC L-ectoine syntha 99.3 3.5E-11 7.5E-16 95.8 11.9 81 96-183 33-114 (125)
13 COG3837 Uncharacterized conser 99.1 2.9E-10 6.2E-15 92.7 9.7 89 90-185 36-127 (161)
14 TIGR01479 GMP_PMI mannose-1-ph 99.1 1.2E-09 2.7E-14 104.4 12.6 78 97-179 375-452 (468)
15 PRK09943 DNA-binding transcrip 99.0 3.8E-09 8.2E-14 88.9 12.2 75 97-177 106-181 (185)
16 PRK15460 cpsB mannose-1-phosph 99.0 2.4E-09 5.2E-14 102.6 12.3 78 96-178 383-460 (478)
17 PRK11171 hypothetical protein; 99.0 1E-08 2.2E-13 91.4 15.1 78 95-177 58-136 (266)
18 PF01050 MannoseP_isomer: Mann 99.0 5.1E-09 1.1E-13 85.9 11.2 76 97-177 62-137 (151)
19 TIGR03214 ura-cupin putative a 99.0 4.9E-09 1.1E-13 93.1 11.2 72 97-174 178-250 (260)
20 COG4101 Predicted mannose-6-ph 99.0 4.5E-09 9.7E-14 82.1 9.4 83 97-182 45-128 (142)
21 TIGR03214 ura-cupin putative a 98.9 2.4E-08 5.2E-13 88.8 13.0 76 97-177 57-133 (260)
22 PRK11171 hypothetical protein; 98.9 2E-08 4.3E-13 89.5 11.2 75 97-177 183-258 (266)
23 PF06560 GPI: Glucose-6-phosph 98.7 1.9E-07 4.1E-12 78.8 11.7 85 94-178 46-146 (182)
24 PF02041 Auxin_BP: Auxin bindi 98.7 3.1E-07 6.7E-12 74.5 10.9 91 90-184 38-133 (167)
25 TIGR03037 anthran_nbaC 3-hydro 98.5 8.4E-07 1.8E-11 73.2 9.5 60 106-167 36-95 (159)
26 PRK13264 3-hydroxyanthranilate 98.5 7.5E-07 1.6E-11 74.6 9.0 66 106-175 42-107 (177)
27 PF02311 AraC_binding: AraC-li 98.4 2.5E-06 5.4E-11 65.8 8.9 64 107-176 12-75 (136)
28 PF03079 ARD: ARD/ARD' family; 98.4 3.3E-06 7.1E-11 69.8 10.0 67 110-177 84-150 (157)
29 TIGR02451 anti_sig_ChrR anti-s 98.3 1.9E-06 4.1E-11 74.6 7.8 73 97-179 126-198 (215)
30 PF11699 CENP-C_C: Mif2/CENP-C 98.3 4.2E-06 9E-11 62.3 8.4 71 97-173 11-82 (85)
31 PF12973 Cupin_7: ChrR Cupin-l 98.3 1.1E-06 2.4E-11 65.7 5.4 66 97-174 23-88 (91)
32 PRK15457 ethanolamine utilizat 98.2 1.8E-05 3.8E-10 68.9 11.7 70 97-176 156-225 (233)
33 COG1791 Uncharacterized conser 98.2 1.3E-05 2.7E-10 66.5 9.7 73 111-185 88-160 (181)
34 PRK10371 DNA-binding transcrip 98.1 1.5E-05 3.3E-10 71.9 9.2 60 102-167 30-89 (302)
35 COG4297 Uncharacterized protei 98.1 1.1E-05 2.4E-10 64.7 6.9 66 108-176 52-118 (163)
36 TIGR02272 gentisate_1_2 gentis 98.1 2.4E-05 5.2E-10 72.0 9.6 77 97-178 80-156 (335)
37 PF06339 Ectoine_synth: Ectoin 98.0 8.1E-05 1.8E-09 58.9 10.4 84 94-183 31-114 (126)
38 PF14499 DUF4437: Domain of un 98.0 2.2E-05 4.8E-10 69.4 7.9 72 97-173 35-106 (251)
39 PRK10296 DNA-binding transcrip 98.0 6.6E-05 1.4E-09 66.3 10.6 52 108-165 33-84 (278)
40 PF05523 FdtA: WxcM-like, C-te 97.9 0.00021 4.6E-09 57.2 11.5 96 78-178 14-111 (131)
41 PRK13501 transcriptional activ 97.9 5.5E-05 1.2E-09 67.4 8.3 56 106-167 26-81 (290)
42 PRK13500 transcriptional activ 97.9 7.7E-05 1.7E-09 67.5 9.0 55 107-167 57-111 (312)
43 TIGR02297 HpaA 4-hydroxyphenyl 97.8 6.8E-05 1.5E-09 66.3 7.8 59 108-171 33-91 (287)
44 PF05899 Cupin_3: Protein of u 97.8 9.6E-05 2.1E-09 53.3 6.5 59 98-163 7-65 (74)
45 KOG2107 Uncharacterized conser 97.7 5.6E-05 1.2E-09 62.4 5.2 56 110-166 85-140 (179)
46 PRK13502 transcriptional activ 97.7 0.00014 3E-09 64.4 7.8 56 106-167 26-81 (282)
47 COG3435 Gentisate 1,2-dioxygen 97.7 7.5E-05 1.6E-09 67.2 5.6 102 71-178 61-167 (351)
48 PRK13503 transcriptional activ 97.6 0.00011 2.4E-09 64.6 6.5 53 107-165 24-76 (278)
49 COG3257 GlxB Uncharacterized p 97.6 0.0006 1.3E-08 58.9 9.7 75 98-177 61-136 (264)
50 TIGR02272 gentisate_1_2 gentis 97.4 0.00057 1.2E-08 63.0 8.0 88 77-174 230-318 (335)
51 PF06249 EutQ: Ethanolamine ut 97.3 0.00066 1.4E-08 55.8 6.1 67 98-174 77-143 (152)
52 PF06052 3-HAO: 3-hydroxyanthr 97.2 0.0038 8.3E-08 50.9 9.7 74 105-182 40-113 (151)
53 COG1898 RfbC dTDP-4-dehydrorha 97.2 0.0067 1.4E-07 50.9 11.0 64 107-170 54-126 (173)
54 TIGR01221 rmlC dTDP-4-dehydror 97.1 0.01 2.3E-07 49.9 11.3 77 106-183 52-139 (176)
55 PF00908 dTDP_sugar_isom: dTDP 97.0 0.006 1.3E-07 51.3 9.1 79 105-184 50-140 (176)
56 COG3450 Predicted enzyme of th 96.9 0.0079 1.7E-07 47.3 8.8 62 97-165 44-105 (116)
57 PF05995 CDO_I: Cysteine dioxy 96.8 0.024 5.2E-07 47.5 11.4 82 97-178 74-164 (175)
58 COG3435 Gentisate 1,2-dioxygen 96.6 0.0073 1.6E-07 54.6 7.5 91 77-175 241-331 (351)
59 COG4766 EutQ Ethanolamine util 96.6 0.022 4.8E-07 46.7 9.3 67 98-174 100-166 (176)
60 PF13621 Cupin_8: Cupin-like d 96.2 0.03 6.5E-07 47.9 8.5 69 100-169 132-236 (251)
61 PF04209 HgmA: homogentisate 1 96.0 0.03 6.5E-07 53.1 8.2 55 113-174 140-194 (424)
62 PF08007 Cupin_4: Cupin superf 95.4 0.18 4E-06 46.0 10.6 67 99-166 114-200 (319)
63 PF12852 Cupin_6: Cupin 94.9 0.13 2.8E-06 42.8 7.6 44 120-166 36-79 (186)
64 TIGR01015 hmgA homogentisate 1 94.8 0.48 1E-05 45.1 11.9 62 111-177 140-201 (429)
65 PRK05341 homogentisate 1,2-dio 94.7 0.26 5.7E-06 46.9 9.8 58 111-174 146-203 (438)
66 COG3806 ChrR Transcriptional a 94.6 0.21 4.5E-06 42.8 8.1 91 74-179 109-199 (216)
67 PF02678 Pirin: Pirin; InterP 94.5 0.13 2.9E-06 39.8 6.3 62 108-173 39-103 (107)
68 PF07385 DUF1498: Protein of u 94.4 0.28 6E-06 42.7 8.6 67 102-168 91-180 (225)
69 PF13759 2OG-FeII_Oxy_5: Putat 94.4 0.21 4.6E-06 37.6 7.0 71 103-173 5-98 (101)
70 PLN02658 homogentisate 1,2-dio 94.2 0.38 8.2E-06 45.8 9.7 55 113-173 141-195 (435)
71 PRK10572 DNA-binding transcrip 94.2 0.22 4.8E-06 44.1 7.8 49 113-167 44-92 (290)
72 COG1741 Pirin-related protein 93.9 0.2 4.3E-06 45.1 7.0 60 102-165 48-109 (276)
73 PRK12335 tellurite resistance 93.8 0.36 7.7E-06 43.2 8.4 62 106-167 19-83 (287)
74 PRK09391 fixK transcriptional 93.6 1.8 3.9E-05 37.1 12.3 138 97-235 35-218 (230)
75 PF05118 Asp_Arg_Hydrox: Aspar 93.5 0.66 1.4E-05 38.3 8.9 70 99-173 81-155 (163)
76 PRK09685 DNA-binding transcrip 93.1 0.74 1.6E-05 40.8 9.3 66 97-167 44-114 (302)
77 KOG3706 Uncharacterized conser 93.1 0.066 1.4E-06 51.4 2.5 88 77-165 285-404 (629)
78 COG5553 Predicted metal-depend 92.9 0.5 1.1E-05 39.3 7.2 77 98-176 73-155 (191)
79 TIGR02466 conserved hypothetic 92.9 0.61 1.3E-05 40.0 8.1 74 100-173 98-194 (201)
80 COG3257 GlxB Uncharacterized p 92.9 0.75 1.6E-05 40.1 8.5 72 96-173 180-252 (264)
81 PRK11753 DNA-binding transcrip 92.5 3.9 8.4E-05 34.0 12.4 130 101-231 21-203 (211)
82 PF14499 DUF4437: Domain of un 92.3 0.11 2.4E-06 46.1 2.9 76 97-177 170-245 (251)
83 PF07847 DUF1637: Protein of u 92.1 0.83 1.8E-05 39.3 7.9 85 93-178 39-143 (200)
84 COG3508 HmgA Homogentisate 1,2 92.0 2.2 4.7E-05 39.8 10.8 70 97-173 124-194 (427)
85 PF05726 Pirin_C: Pirin C-term 91.9 0.52 1.1E-05 35.8 5.9 68 101-176 2-69 (104)
86 PF02373 JmjC: JmjC domain, hy 91.9 0.3 6.5E-06 36.8 4.5 29 140-168 79-107 (114)
87 KOG3995 3-hydroxyanthranilate 91.3 0.35 7.5E-06 41.9 4.6 56 107-164 42-97 (279)
88 COG3822 ABC-type sugar transpo 90.1 2 4.4E-05 36.7 8.0 65 102-166 90-177 (225)
89 PRK15131 mannose-6-phosphate i 89.6 2.1 4.5E-05 40.4 8.8 59 97-163 320-378 (389)
90 COG2850 Uncharacterized conser 89.3 0.78 1.7E-05 42.8 5.5 61 104-165 125-202 (383)
91 PF14525 AraC_binding_2: AraC- 88.6 6.5 0.00014 31.1 10.0 65 98-167 34-98 (172)
92 PRK10579 hypothetical protein; 88.6 7.5 0.00016 29.4 9.4 49 114-165 36-84 (94)
93 PF06865 DUF1255: Protein of u 88.5 3.9 8.4E-05 31.0 7.8 63 104-174 29-91 (94)
94 PF11142 DUF2917: Protein of u 88.4 2.1 4.7E-05 29.8 6.0 57 103-164 2-58 (63)
95 PRK00924 5-keto-4-deoxyuronate 87.7 5.2 0.00011 36.1 9.5 82 97-180 174-261 (276)
96 TIGR00218 manA mannose-6-phosp 87.6 4.8 0.0001 36.4 9.5 59 97-163 234-292 (302)
97 PLN02288 mannose-6-phosphate i 87.0 2.1 4.6E-05 40.4 7.0 58 97-158 333-390 (394)
98 PF09313 DUF1971: Domain of un 86.0 6.2 0.00013 29.0 7.6 60 108-167 13-75 (82)
99 KOG2757 Mannose-6-phosphate is 85.7 4.2 9E-05 38.1 8.0 76 90-173 327-402 (411)
100 PF00027 cNMP_binding: Cyclic 85.5 2.9 6.2E-05 29.2 5.6 48 103-152 2-51 (91)
101 PF06172 Cupin_5: Cupin superf 84.4 20 0.00043 28.9 11.2 84 97-183 40-130 (139)
102 PRK13918 CRP/FNR family transc 82.6 5.4 0.00012 32.9 6.9 126 102-230 8-183 (202)
103 PRK11161 fumarate/nitrate redu 82.4 15 0.00032 31.1 9.7 126 103-232 40-220 (235)
104 PF04962 KduI: KduI/IolB famil 82.2 25 0.00054 31.4 11.3 96 80-180 135-247 (261)
105 COG1482 ManA Phosphomannose is 76.4 22 0.00049 32.6 9.3 59 97-163 241-299 (312)
106 smart00100 cNMP Cyclic nucleot 75.5 17 0.00036 25.9 7.0 54 101-155 18-72 (120)
107 PF04962 KduI: KduI/IolB famil 75.4 29 0.00064 30.9 9.6 82 82-173 14-103 (261)
108 PLN02868 acyl-CoA thioesterase 73.6 12 0.00027 35.1 7.2 53 101-154 32-84 (413)
109 cd00038 CAP_ED effector domain 73.5 16 0.00034 26.0 6.4 52 101-153 18-70 (115)
110 COG3123 Uncharacterized protei 72.6 13 0.00028 27.7 5.4 44 117-163 39-82 (94)
111 PRK00924 5-keto-4-deoxyuronate 72.4 35 0.00076 30.8 9.3 50 119-173 73-125 (276)
112 PRK10402 DNA-binding transcrip 70.5 15 0.00033 31.2 6.4 127 102-231 33-204 (226)
113 PRK03606 ureidoglycolate hydro 68.0 38 0.00082 28.1 8.0 76 97-172 55-137 (162)
114 PRK15186 AraC family transcrip 66.7 24 0.00051 31.9 7.1 46 120-169 39-84 (291)
115 KOG3416 Predicted nucleic acid 63.8 27 0.00058 28.0 6.0 65 91-164 12-80 (134)
116 KOG2130 Phosphatidylserine-spe 63.2 18 0.00038 33.5 5.5 30 142-171 263-292 (407)
117 PF02787 CPSase_L_D3: Carbamoy 63.0 9.7 0.00021 30.0 3.5 37 196-232 72-108 (123)
118 PHA02984 hypothetical protein; 61.7 55 0.0012 29.5 8.2 50 122-173 96-145 (286)
119 PF04115 Ureidogly_hydro: Urei 61.4 44 0.00095 27.6 7.3 79 97-175 56-143 (165)
120 PF04622 ERG2_Sigma1R: ERG2 an 60.7 31 0.00067 30.0 6.4 92 109-211 112-205 (216)
121 TIGR00218 manA mannose-6-phosp 60.1 5.2 0.00011 36.2 1.6 19 143-161 152-170 (302)
122 TIGR03697 NtcA_cyano global ni 60.0 22 0.00047 28.9 5.2 113 118-232 10-179 (193)
123 PRK14585 pgaD putative PGA bio 58.0 16 0.00035 29.5 3.9 38 195-234 88-125 (137)
124 PF13994 PgaD: PgaD-like prote 57.7 18 0.00039 28.9 4.2 37 196-234 100-136 (138)
125 COG1482 ManA Phosphomannose is 57.3 9.6 0.00021 35.0 2.8 22 143-164 159-180 (312)
126 COG0664 Crp cAMP-binding prote 56.9 40 0.00087 27.2 6.4 131 100-234 23-209 (214)
127 PRK14584 hmsS hemin storage sy 56.1 20 0.00043 29.6 4.2 26 195-220 97-122 (153)
128 PRK15131 mannose-6-phosphate i 54.3 14 0.0003 35.0 3.4 22 143-164 238-259 (389)
129 COG1741 Pirin-related protein 52.8 1.8E+02 0.0038 26.3 11.8 43 89-133 165-207 (276)
130 PF13640 2OG-FeII_Oxy_3: 2OG-F 52.7 36 0.00079 24.7 4.9 63 103-165 4-86 (100)
131 PF13464 DUF4115: Domain of un 51.7 83 0.0018 22.2 7.5 48 125-173 4-52 (77)
132 PHA02890 hypothetical protein; 50.7 1E+02 0.0023 27.6 8.1 41 123-164 96-136 (278)
133 PF14801 GCD14_N: tRNA methylt 49.8 33 0.00073 23.3 3.8 31 131-161 11-41 (54)
134 PRK09392 ftrB transcriptional 49.4 40 0.00086 28.6 5.3 130 102-236 32-211 (236)
135 KOG4281 Uncharacterized conser 48.5 8.4 0.00018 33.5 0.9 43 94-136 71-113 (236)
136 PF13545 HTH_Crp_2: Crp-like h 47.2 20 0.00043 24.8 2.6 36 196-231 28-63 (76)
137 PRK13395 ureidoglycolate hydro 46.6 1.3E+02 0.0028 25.2 7.7 64 112-175 72-141 (171)
138 KOG2131 Uncharacterized conser 45.1 23 0.00051 33.3 3.3 65 102-168 201-294 (427)
139 COG3718 IolB Uncharacterized e 44.3 1.7E+02 0.0038 26.0 8.4 69 98-167 29-102 (270)
140 KOG1417 Homogentisate 1,2-diox 41.4 2.9E+02 0.0063 25.5 12.4 63 111-178 147-209 (446)
141 COG3718 IolB Uncharacterized e 38.1 2.9E+02 0.0064 24.6 9.4 55 104-158 159-229 (270)
142 PRK10202 ebgC cryptic beta-D-g 38.0 83 0.0018 25.5 5.2 52 112-163 58-127 (149)
143 PHA00672 hypothetical protein 37.5 1.9E+02 0.0041 23.3 6.9 70 96-172 45-114 (152)
144 PF06719 AraC_N: AraC-type tra 37.1 2.2E+02 0.0047 22.8 9.6 52 119-175 23-77 (155)
145 PRK02290 3-dehydroquinate synt 36.4 1E+02 0.0023 28.7 6.1 85 77-165 250-337 (344)
146 PF00325 Crp: Bacterial regula 35.7 29 0.00063 20.9 1.7 28 197-224 3-30 (32)
147 smart00345 HTH_GNTR helix_turn 31.2 88 0.0019 19.9 3.7 37 196-232 19-56 (60)
148 KOG0498 K+-channel ERG and rel 29.6 90 0.002 32.1 5.0 49 103-152 445-493 (727)
149 PF01959 DHQS: 3-dehydroquinat 29.5 1.5E+02 0.0033 27.7 6.1 69 97-165 276-347 (354)
150 COG2731 EbgC Beta-galactosidas 28.1 1.9E+02 0.004 23.9 5.8 57 111-167 61-137 (154)
151 TIGR00022 uncharacterized prot 27.8 2E+02 0.0044 22.8 5.9 26 111-136 61-86 (142)
152 PLN02288 mannose-6-phosphate i 27.6 43 0.00094 31.7 2.2 21 143-163 252-272 (394)
153 PF13384 HTH_23: Homeodomain-l 27.2 67 0.0015 20.2 2.5 29 196-224 17-45 (50)
154 cd00092 HTH_CRP helix_turn_hel 27.2 1.2E+02 0.0027 19.9 4.0 35 196-230 25-59 (67)
155 KOG0500 Cyclic nucleotide-gate 27.0 1.2E+02 0.0025 29.8 5.0 33 118-152 347-379 (536)
156 PF04074 DUF386: Domain of unk 26.6 3E+02 0.0065 22.0 6.8 53 111-163 61-134 (153)
157 smart00419 HTH_CRP helix_turn_ 26.3 1.1E+02 0.0025 18.5 3.4 35 196-230 8-42 (48)
158 PLN03192 Voltage-dependent pot 26.0 1.2E+02 0.0026 31.3 5.3 52 100-152 397-448 (823)
159 TIGR03697 NtcA_cyano global ni 25.8 90 0.0019 25.2 3.6 29 196-231 154-185 (193)
160 PF13011 LZ_Tnp_IS481: leucine 25.0 70 0.0015 23.8 2.5 46 186-233 17-62 (85)
161 cd07377 WHTH_GntR Winged helix 24.8 1.5E+02 0.0032 19.2 4.0 36 197-232 25-61 (66)
162 smart00420 HTH_DEOR helix_turn 24.6 1E+02 0.0022 19.0 3.0 37 196-232 14-50 (53)
163 PF04773 FecR: FecR protein; 24.4 2.6E+02 0.0057 19.7 7.8 56 102-159 20-76 (98)
164 KOG2968 Predicted esterase of 24.0 39 0.00083 35.6 1.2 61 91-152 499-560 (1158)
165 PF00166 Cpn10: Chaperonin 10 23.9 1.1E+02 0.0024 22.6 3.4 28 137-164 49-76 (93)
166 PRK13918 CRP/FNR family transc 23.4 94 0.002 25.3 3.3 29 196-231 160-191 (202)
167 PF05962 HutD: HutD; InterPro 22.9 1.3E+02 0.0029 25.2 4.1 34 118-156 134-167 (184)
168 PF13613 HTH_Tnp_4: Helix-turn 22.4 93 0.002 20.3 2.5 24 196-219 19-42 (53)
169 PF13412 HTH_24: Winged helix- 22.1 92 0.002 19.5 2.4 32 194-225 15-46 (48)
170 PF02796 HTH_7: Helix-turn-hel 21.2 1E+02 0.0023 19.4 2.5 29 189-219 16-44 (45)
171 PF01987 AIM24: Mitochondrial 21.2 1.4E+02 0.0031 25.1 4.1 44 120-164 130-173 (215)
172 PTZ00490 Ferredoxin superfamil 21.1 2E+02 0.0043 23.3 4.6 33 120-152 26-58 (143)
173 PF13348 Y_phosphatase3C: Tyro 20.9 95 0.0021 21.1 2.4 23 198-220 45-67 (68)
174 COG3717 KduI 5-keto 4-deoxyuro 20.8 4.4E+02 0.0096 23.5 6.9 82 94-177 173-260 (278)
175 PF07172 GRP: Glycine rich pro 20.1 65 0.0014 24.3 1.5 6 19-24 16-21 (95)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.95 E-value=5.4e-27 Score=216.83 Aligned_cols=163 Identities=17% Similarity=0.282 Sum_probs=144.3
Q ss_pred CccCCCCCCCCCCCeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCE
Q 045405 50 GFPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGT 129 (240)
Q Consensus 50 g~~ck~~~~v~~~df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~ 129 (240)
..+-+++....++.|+|.+....+. ...||+++.++..++|+++ ++++++++|+||++.++|||++++|++||++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~p~-~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~ 276 (367)
T TIGR03404 200 QEAVTGPAGEVPGPFTYHLSEQKPK-QVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ 276 (367)
T ss_pred cccCcCCCCCCCccEEEEhhhCCce-ecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence 3444555555567799976665544 5777889999999999998 699999999999999999999999999999999
Q ss_pred EEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCC
Q 045405 130 VLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVG 209 (240)
Q Consensus 130 ~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~ 209 (240)
+++++.+++++..+..+++||++++|+|..|+++|.|+++++++++|++..++.+.++++ ++ .+|++||+++|+++
T Consensus 277 ~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~-l~---~~p~~vl~~~~~~~ 352 (367)
T TIGR03404 277 ARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQW-LA---LTPPQLVAAHLNLD 352 (367)
T ss_pred EEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHH-Hh---hCCHHHHHHHhCcC
Confidence 999999887776788999999999999999999999999999999999999999998864 45 59999999999999
Q ss_pred HHHHHHHHhh
Q 045405 210 DDVINTIRAA 219 (240)
Q Consensus 210 ~~~v~~l~~~ 219 (240)
++++++|++.
T Consensus 353 ~~~~~~l~~~ 362 (367)
T TIGR03404 353 DEVIDSLKKE 362 (367)
T ss_pred HHHHHhcccc
Confidence 9999999875
No 2
>PLN00212 glutelin; Provisional
Probab=99.93 E-value=3.6e-25 Score=210.04 Aligned_cols=149 Identities=21% Similarity=0.370 Sum_probs=131.0
Q ss_pred CCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEEEEEECCCC
Q 045405 72 PTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFFSKVLTPGK 150 (240)
Q Consensus 72 ~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~~~~l~~GD 150 (240)
.++.++.+|+++.++..++|+|++++|++.+++|.||++.+||||++|+|++||++|++++++++++| +++..+|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999874 78899999999
Q ss_pred EEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceec--cchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCCc
Q 045405 151 VFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDS--IGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSS 224 (240)
Q Consensus 151 v~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~--~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~~ 224 (240)
+++||+|++|.... +++...++++.++.++-...+ ..++|+ ++|.+||+++|+++.+++++|+..+....
T Consensus 402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~---alp~eVla~Af~is~eea~~lk~n~~~e~ 473 (493)
T PLN00212 402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFR---ALPVDVIANAYRISREEARRLKNNRGDEL 473 (493)
T ss_pred EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHH---hCCHHHHHHHcCCCHHHHHHHHhcccCce
Confidence 99999999999866 567788888776555432222 267999 79999999999999999999999875444
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.92 E-value=1.9e-24 Score=175.11 Aligned_cols=134 Identities=30% Similarity=0.482 Sum_probs=112.5
Q ss_pred ecCCCCCccCcCCceEEEecccCCCCCCcc-ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-----e
Q 045405 67 DFSKDPTTFDVFKRAVTFGDVFGFPAVNTQ-GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-----T 140 (240)
Q Consensus 67 ~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~-gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-----~ 140 (240)
++.++.+..+..+|+++.++..++|.+..+ ++.+.++.++||++.+|||| ++.|+.||++|+++++++.+++ +
T Consensus 2 n~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~ 80 (144)
T PF00190_consen 2 NLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFR 80 (144)
T ss_dssp ETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEE
T ss_pred CCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccce
Confidence 455555566778889999999999965544 55666777899999999999 9999999999999999999876 3
Q ss_pred EEEEE--ECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHH
Q 045405 141 FFSKV--LTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVI 213 (240)
Q Consensus 141 ~~~~~--l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v 213 (240)
....+ +++||++++|+|.+||+.|.|+++...+.+|++.+|..+ +|+++++++|+++.+++
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 45566 999999999999999999999888888888887777664 78999999999999875
No 4
>PLN00212 glutelin; Provisional
Probab=99.91 E-value=2.8e-23 Score=197.22 Aligned_cols=155 Identities=15% Similarity=0.242 Sum_probs=128.7
Q ss_pred cCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-E-----------
Q 045405 75 FDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-F----------- 142 (240)
Q Consensus 75 ~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~----------- 142 (240)
....||.+..+ ..+.+.|+|+|+++.|++|+|+|+.+|||| ++++++||++|++.++++.|++.. +
T Consensus 58 i~se~G~~E~~-~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~ 135 (493)
T PLN00212 58 VRSEAGVTEYF-DEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEG 135 (493)
T ss_pred hcccCceeeec-CCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccc
Confidence 35677744444 477899999999999999999999999999 899999999999999999875311 1
Q ss_pred -------------EEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCC--------ceecc--------------
Q 045405 143 -------------SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG--------VSDSI-------------- 187 (240)
Q Consensus 143 -------------~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg--------~~~~~-------------- 187 (240)
.+.+++||++++|+|++||++|.|+++++++++++..++. .+.++
T Consensus 136 ~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~ 215 (493)
T PLN00212 136 QSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSI 215 (493)
T ss_pred cccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccc
Confidence 1589999999999999999999999999999888754431 22222
Q ss_pred -----chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCC-CceEEecCCeee
Q 045405 188 -----GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQ-SSWINILDGRSI 234 (240)
Q Consensus 188 -----~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~-~~~i~~~~~~~~ 234 (240)
.++|+ +|++++|++||+++.++++||+..++. ..||++.++.++
T Consensus 216 ~~~~~~nifs---GF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~~~l~~ 265 (493)
T PLN00212 216 EQHSGQNIFS---GFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKNGLQL 265 (493)
T ss_pred cccccCchhh---cCCHHHHHHHHCCCHHHHHHHhccccCCccEEEECCCccc
Confidence 35999 899999999999999999999988764 558899876553
No 5
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=4.8e-23 Score=190.56 Aligned_cols=147 Identities=19% Similarity=0.250 Sum_probs=126.5
Q ss_pred CeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEE
Q 045405 63 DFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFF 142 (240)
Q Consensus 63 df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~ 142 (240)
-|.|.+++.. ...|++++.++..++|+++ ++++.++++.||++.++|||. +.|++||++|++++++++++|+.+
T Consensus 37 ~~~~~~~~~~---~~~gG~~~~~~~~~lP~l~--~ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~g~~~ 110 (367)
T TIGR03404 37 KWSFSDSHNR---LENGGWAREVTVRDLPIST--AIAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDENGRNY 110 (367)
T ss_pred eeeeccccCc---cccCceEEEeChhhccCcc--cccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCCCcEE
Confidence 3566666543 2468899999999999999 489999999999999999994 689999999999999999888988
Q ss_pred EEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCC---CCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 045405 143 SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQN---PGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAA 219 (240)
Q Consensus 143 ~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~---Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~ 219 (240)
...|++||+++||+|.+|+++|.+ ++++++.+|+... +..+.+.+ +|+ .+|++||+++|+++++++++|++.
T Consensus 111 ~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~-~l~---~~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 111 IDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTD-WLA---HTPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred EeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHH-HHH---hCCHHHHHHHhCCCHHHHHhcccc
Confidence 789999999999999999999985 5678888887754 45666765 567 599999999999999999999876
Q ss_pred c
Q 045405 220 R 220 (240)
Q Consensus 220 ~ 220 (240)
.
T Consensus 186 ~ 186 (367)
T TIGR03404 186 E 186 (367)
T ss_pred C
Confidence 4
No 6
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.87 E-value=1.3e-20 Score=152.97 Aligned_cols=135 Identities=36% Similarity=0.633 Sum_probs=117.8
Q ss_pred cCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC-CeEEEEEECCCCEEE
Q 045405 75 FDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN-NTFFSKVLTPGKVFL 153 (240)
Q Consensus 75 ~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-g~~~~~~l~~GDv~v 153 (240)
.+..||+++.++..++|.+++.++.+.+++++||+..++|||+++.|++||++|++++.+.++. ++.....+++||+++
T Consensus 7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 4677888999999999999999999999999999999999998889999999999999987653 355678999999999
Q ss_pred eCCCCeEEEEecCCCCEEEEEEEeCCCCCce---eccchhhcCCCCCCHHHHHhhcCCCHHHH
Q 045405 154 IPRALVHFQLNVGNEPATFIPIFNTQNPGVS---DSIGTLFDTTPPVPNEVLTKSFRVGDDVI 213 (240)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~---~~~~~lf~s~~~~p~~vla~af~v~~~~v 213 (240)
+|+|..|++.|.+++++++++ +.+++|... ....++|. ++++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHc
Confidence 999999999999999999885 666666542 22247888 899999999999999875
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.78 E-value=2e-18 Score=146.70 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=128.2
Q ss_pred CCCCeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCe--EEEEeeCEEEEEEEcc
Q 045405 60 TSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTE--AGIVTRGTVLVGLVTT 137 (240)
Q Consensus 60 ~~~df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~E--i~yVl~G~~~v~~v~~ 137 (240)
..+||+|.+...... ..|+.+.......+|+. .-..+.+.||++...||||+++| |.||++|++++.+.++
T Consensus 49 ~~~~~~yel~~~~~~--~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~ 121 (209)
T COG2140 49 KEDDFVYELLESEPG--ERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKP 121 (209)
T ss_pred CCCceEEEeeccccc--ccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcC
Confidence 468899955443222 23888999888888887 45678999999999999999999 9999999999999999
Q ss_pred CCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 045405 138 NNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIR 217 (240)
Q Consensus 138 ~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~ 217 (240)
+|+..+..+++||+++||++..|+..|+|++|++++.++....+....+..+++ +++..+++..|+.+.+..+.++
T Consensus 122 ~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~D~p~ 197 (209)
T COG2140 122 EGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLG----GMPPVLVENGLNKNPKYVDVPR 197 (209)
T ss_pred CCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhc----cCCceeeccccccCcccccCcc
Confidence 999889999999999999999999999999999999999887777777665555 4888899999998888888776
Q ss_pred hhcC
Q 045405 218 AARA 221 (240)
Q Consensus 218 ~~~~ 221 (240)
.++.
T Consensus 198 ~~~~ 201 (209)
T COG2140 198 IKFA 201 (209)
T ss_pred cccc
Confidence 6554
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.44 E-value=4.5e-13 Score=94.63 Aligned_cols=70 Identities=33% Similarity=0.550 Sum_probs=63.4
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
+++++||+..++|+|+...|++||++|++++.+ +|+ ...+++||.+++|+|..|...|.++++++++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999886699999999999984 355 7899999999999999999999999999998775
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.36 E-value=8.1e-12 Score=99.29 Aligned_cols=85 Identities=28% Similarity=0.455 Sum_probs=72.1
Q ss_pred CCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCC
Q 045405 89 GFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNE 168 (240)
Q Consensus 89 ~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~ 168 (240)
-.+...+..+.+.++.++||+..+.|+||...+.+||++|++++++. ++ .+.+++||++++|+|..|+..|.++.
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~--~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE--KKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC--ceEecCCCEEEECCCCeeeeccCCCC
Confidence 34444455688999999999999999998568999999999999984 44 68999999999999999999999988
Q ss_pred CEEEEEEEeC
Q 045405 169 PATFIPIFNT 178 (240)
Q Consensus 169 ~a~~i~~~~s 178 (240)
+...++++..
T Consensus 109 ~~~~l~v~~~ 118 (131)
T COG1917 109 PMVLLLVFPL 118 (131)
T ss_pred ceeEEEEeee
Confidence 7666666654
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.9e-11 Score=97.30 Aligned_cols=82 Identities=23% Similarity=0.236 Sum_probs=72.5
Q ss_pred cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405 96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (240)
...++.++.++||+-..+|.|.+.+|++||++|++.+.+. ++ ...+++||++++|+|..|...|.|..++.++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~---~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG---GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 3678999999999998888888889999999999999984 55 789999999999999999999999999999987
Q ss_pred EeCCCCC
Q 045405 176 FNTQNPG 182 (240)
Q Consensus 176 ~~s~~Pg 182 (240)
-.....+
T Consensus 109 ~~p~~~~ 115 (127)
T COG0662 109 QSPPYLG 115 (127)
T ss_pred ecCCcCC
Confidence 7654443
No 11
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.33 E-value=2.9e-11 Score=102.75 Aligned_cols=88 Identities=22% Similarity=0.316 Sum_probs=75.7
Q ss_pred CCCCccceEEEEEEEcCCcc------cCCccCCCC--CeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEE
Q 045405 91 PAVNTQGVALFRIDLDVGGI------NPPHTHPRG--TEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQ 162 (240)
Q Consensus 91 P~l~~~gls~~~v~l~pGg~------~~pH~Hp~a--~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~ 162 (240)
|.++..++.+....+.||.. .+.|+|+.. .|+.||++|++.+.+.+.+|......+++||++++|+|..|.+
T Consensus 61 ~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~ 140 (191)
T PRK04190 61 PEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRS 140 (191)
T ss_pred CCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEe
Confidence 34455579999999999996 567999754 5999999999999987776655578999999999999999999
Q ss_pred EecCCCCEEEEEEEeC
Q 045405 163 LNVGNEPATFIPIFNT 178 (240)
Q Consensus 163 ~N~G~~~a~~i~~~~s 178 (240)
.|+|++++++++++..
T Consensus 141 iN~G~epl~fl~v~p~ 156 (191)
T PRK04190 141 VNTGDEPLVFLACYPA 156 (191)
T ss_pred EECCCCCEEEEEEEcC
Confidence 9999999999988754
No 12
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.31 E-value=3.5e-11 Score=95.81 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=69.6
Q ss_pred cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEE-EEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405 96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVG-LVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP 174 (240)
Q Consensus 96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~-~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (240)
.++++.+++++||+..+.|+|.. .|++||++|++++. +. +|+ ++.|++||++++|++..|.+.|. +++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~--~g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~ 105 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLA--TGE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVC 105 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcC--CCE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEE
Confidence 36789999999999999999965 69999999999998 42 255 68999999999999999999997 8999999
Q ss_pred EEeCCCCCc
Q 045405 175 IFNTQNPGV 183 (240)
Q Consensus 175 ~~~s~~Pg~ 183 (240)
+++..-+|.
T Consensus 106 v~tP~~~~~ 114 (125)
T PRK13290 106 VFNPPLTGR 114 (125)
T ss_pred EECCCCCCc
Confidence 987555544
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.14 E-value=2.9e-10 Score=92.70 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCCCCccceEEEEEEEcCCcc-cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCC--CeEEEEecC
Q 045405 90 FPAVNTQGVALFRIDLDVGGI-NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRA--LVHFQLNVG 166 (240)
Q Consensus 90 ~P~l~~~gls~~~v~l~pGg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G--~~H~~~N~G 166 (240)
+-+|. .+.+....++||+. ...|||...+|++|||+|++.+.+. +. .+.|++||++-||+| ..|.+.|.|
T Consensus 36 ~~Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d---~~--e~~lrpGD~~gFpAG~~~aHhliN~s 108 (161)
T COG3837 36 ALGLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED---GG--ETRLRPGDSAGFPAGVGNAHHLINRS 108 (161)
T ss_pred hcChh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEEC---Ce--eEEecCCceeeccCCCcceeEEeecC
Confidence 34455 46677788999996 7889999999999999999998873 44 679999999999999 899999999
Q ss_pred CCCEEEEEEEeCCCCCcee
Q 045405 167 NEPATFIPIFNTQNPGVSD 185 (240)
Q Consensus 167 ~~~a~~i~~~~s~~Pg~~~ 185 (240)
+..++.+++=+...-....
T Consensus 109 ~~~~~yL~vG~r~~~d~i~ 127 (161)
T COG3837 109 DVILRYLEVGTREPDDIIT 127 (161)
T ss_pred CceEEEEEeccccccceee
Confidence 9999998876543333333
No 14
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.08 E-value=1.2e-09 Score=104.38 Aligned_cols=78 Identities=24% Similarity=0.278 Sum_probs=70.6
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
++.+.+++++||+..++|+|+...|.+||++|++++.+. |+ ++.|++||.+++|+|..|.+.|.|+++++++++.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d---g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG---DE--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 678899999999988889998889999999999999873 55 6899999999999999999999999999999987
Q ss_pred eCC
Q 045405 177 NTQ 179 (240)
Q Consensus 177 ~s~ 179 (240)
...
T Consensus 450 ~~~ 452 (468)
T TIGR01479 450 SGS 452 (468)
T ss_pred cCC
Confidence 633
No 15
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.03 E-value=3.8e-09 Score=88.89 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=64.2
Q ss_pred ceEEEEEEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405 97 GVALFRIDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 97 gls~~~v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (240)
.+.+.+..++||+.. +.|+|+. .|++||++|++.+.+. ++ .+.|++||.+++|.+.+|.+.|.|+++++++.+
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~~---~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTIN---GQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred eeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEEC---CE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence 466778899999964 4677754 9999999999999873 55 689999999999999999999999999998887
Q ss_pred Ee
Q 045405 176 FN 177 (240)
Q Consensus 176 ~~ 177 (240)
..
T Consensus 180 ~~ 181 (185)
T PRK09943 180 HT 181 (185)
T ss_pred eC
Confidence 54
No 16
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.03 E-value=2.4e-09 Score=102.59 Aligned_cols=78 Identities=23% Similarity=0.251 Sum_probs=69.6
Q ss_pred cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405 96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (240)
.++.+.+++++||+....|+|....|.+||++|++++.+. |+ ++.|++||.+++|+|.+|.+.|.|++++++|++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id---g~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID---GD--IKLLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 3678899999999987778877778999999999999984 55 789999999999999999999999999999988
Q ss_pred EeC
Q 045405 176 FNT 178 (240)
Q Consensus 176 ~~s 178 (240)
...
T Consensus 458 ~~g 460 (478)
T PRK15460 458 RSG 460 (478)
T ss_pred EcC
Confidence 653
No 17
>PRK11171 hypothetical protein; Provisional
Probab=99.02 E-value=1e-08 Score=91.36 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=68.1
Q ss_pred ccceEEEEEEEcCCcccCCccCC-CCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405 95 TQGVALFRIDLDVGGINPPHTHP-RGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 95 ~~gls~~~v~l~pGg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (240)
..++.+.+++++||+....|+|. ...|++||++|++++.+. ++ ++.|++||.+++|++..|.+.|.|+++++++
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~---g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l 132 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLE---GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFH 132 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 34689999999999987777765 558999999999999873 55 7899999999999999999999999999998
Q ss_pred EEEe
Q 045405 174 PIFN 177 (240)
Q Consensus 174 ~~~~ 177 (240)
.+..
T Consensus 133 ~v~~ 136 (266)
T PRK11171 133 WIRK 136 (266)
T ss_pred EEEc
Confidence 8764
No 18
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.99 E-value=5.1e-09 Score=85.95 Aligned_cols=76 Identities=28% Similarity=0.313 Sum_probs=69.1
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
+..+-++.+.||.....|.|....|.++|++|++.+.+. ++ ...+++||.+++|+|..|.+.|.|+.+++++.+-
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~---~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq 136 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD---DE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQ 136 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC---CE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEe
Confidence 577899999999999999998889999999999999973 55 6799999999999999999999999999998765
Q ss_pred e
Q 045405 177 N 177 (240)
Q Consensus 177 ~ 177 (240)
.
T Consensus 137 ~ 137 (151)
T PF01050_consen 137 T 137 (151)
T ss_pred c
Confidence 3
No 19
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.97 E-value=4.9e-09 Score=93.13 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=63.3
Q ss_pred ceEEEEEEEcCCcccCC-ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405 97 GVALFRIDLDVGGINPP-HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP 174 (240)
Q Consensus 97 gls~~~v~l~pGg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (240)
++.+.+++++||+..+. |.| ..+|.+||++|++.+.+ +|+ +..+++||++++|++.+|+++|.|++++++|.
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H-~~eh~~yiL~G~G~~~~---~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ 250 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETH-VMEHGLYVLEGKGVYNL---DNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLL 250 (260)
T ss_pred CcEEEEEEECCCcccCCcccc-cceeEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEE
Confidence 57788899999999985 556 45789999999999876 466 78999999999999999999999999998874
No 20
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=4.5e-09 Score=82.10 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=73.1
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (240)
++.+-.++++||+-.-.|-|...+..+||++|+...++. +++ +..+.++||.|++|+|++|.-.|.+++++..+.+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G---~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG---NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec---cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence 788899999999999999999888899999999999884 343 4678899999999999999999999999998887
Q ss_pred EeCCCCC
Q 045405 176 FNTQNPG 182 (240)
Q Consensus 176 ~~s~~Pg 182 (240)
-+..+|.
T Consensus 122 RsDp~~~ 128 (142)
T COG4101 122 RSDPNPQ 128 (142)
T ss_pred ccCCCCC
Confidence 7766654
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.91 E-value=2.4e-08 Score=88.76 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=66.0
Q ss_pred ceEEEEEEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405 97 GVALFRIDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 97 gls~~~v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (240)
.+.+.+++++||+-. .+|+|+...|++||++|++++.+. ++ ++.|++||.+++|+|..|.+.|.++++++++.+
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~---g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE---GE--THELREGGYAYLPPGSKWTLANAQAEDARFFLY 131 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 588999999998754 466677778999999999999863 55 679999999999999999999999999999876
Q ss_pred Ee
Q 045405 176 FN 177 (240)
Q Consensus 176 ~~ 177 (240)
-.
T Consensus 132 ~k 133 (260)
T TIGR03214 132 KK 133 (260)
T ss_pred Ee
Confidence 64
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.87 E-value=2e-08 Score=89.52 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=65.4
Q ss_pred ceEEEEEEEcCCcccCCc-cCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405 97 GVALFRIDLDVGGINPPH-THPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH-~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (240)
.+.+.+++|+||+..+.| +| ...|.+||++|++++.+ +++ ++.|++||++.+|.+.+|++.|.|+++++++..
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~---~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL---NND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 368899999999998884 56 56899999999999987 356 789999999999999999999999999998864
Q ss_pred Ee
Q 045405 176 FN 177 (240)
Q Consensus 176 ~~ 177 (240)
-+
T Consensus 257 k~ 258 (266)
T PRK11171 257 KD 258 (266)
T ss_pred cc
Confidence 43
No 23
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.72 E-value=1.9e-07 Score=78.80 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=57.9
Q ss_pred CccceEEEEEEEcCCcc------cCCccCCC------CCeEEEEeeCEEEEEEEccCC----eEEEEEECCCCEEEeCCC
Q 045405 94 NTQGVALFRIDLDVGGI------NPPHTHPR------GTEAGIVTRGTVLVGLVTTNN----TFFSKVLTPGKVFLIPRA 157 (240)
Q Consensus 94 ~~~gls~~~v~l~pGg~------~~pH~Hp~------a~Ei~yVl~G~~~v~~v~~~g----~~~~~~l~~GDv~v~P~G 157 (240)
...++......+.||-+ ..=|+|+. ..|+.+|++|++.+.+-+.++ +.+...+++||+++||++
T Consensus 46 ~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~ 125 (182)
T PF06560_consen 46 QKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPG 125 (182)
T ss_dssp ----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT
T ss_pred eeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCC
Confidence 33468888888999864 24599988 899999999999999988877 667789999999999999
Q ss_pred CeEEEEecCCCCEEEEEEEeC
Q 045405 158 LVHFQLNVGNEPATFIPIFNT 178 (240)
Q Consensus 158 ~~H~~~N~G~~~a~~i~~~~s 178 (240)
..|...|+|++++++.....+
T Consensus 126 yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 126 YAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp -EEEEEE-SSS-EEEEEEEET
T ss_pred ceEEEEECCCCcEEEEEEEec
Confidence 999999999999998876653
No 24
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.67 E-value=3.1e-07 Score=74.53 Aligned_cols=91 Identities=20% Similarity=0.260 Sum_probs=56.7
Q ss_pred CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC----CeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405 90 FPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN----NTFFSKVLTPGKVFLIPRALVHFQLNV 165 (240)
Q Consensus 90 ~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----g~~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (240)
.-+++ .+.+.+-++.||...|+|-| ..+|+++|++|+++..+.... |+..+..+-+++.+.||.+..|...|+
T Consensus 38 ~hGmk--evEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT 114 (167)
T PF02041_consen 38 LHGMK--EVEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNT 114 (167)
T ss_dssp HH--S--SEEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE--
T ss_pred hcCce--eeeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecC
Confidence 34555 57899999999999999999 569999999999999987654 566678999999999999999999999
Q ss_pred CC-CCEEEEEEEeCCCCCce
Q 045405 166 GN-EPATFIPIFNTQNPGVS 184 (240)
Q Consensus 166 G~-~~a~~i~~~~s~~Pg~~ 184 (240)
++ +++.++++++ .-|-..
T Consensus 115 ~e~eDlqvlViiS-rpPvkv 133 (167)
T PF02041_consen 115 NEHEDLQVLVIIS-RPPVKV 133 (167)
T ss_dssp -SSS-EEEEEEEE-SSS--E
T ss_pred CCCcceEEEEEec-CCCeEE
Confidence 94 7888887664 444333
No 25
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.51 E-value=8.4e-07 Score=73.22 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=49.4
Q ss_pred cCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
.||.-...|.|+ .+|++|+++|++.+.+.+. |+.....|++||++++|+|+.|.....++
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 455556678886 6999999999999998765 55457899999999999999999887543
No 26
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.49 E-value=7.5e-07 Score=74.60 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=53.5
Q ss_pred cCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405 106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (240)
.||.-...|+|+ .+|++|+++|++++.+.+. |+.....|++||++++|+|+.|..+.. +..+.+.+
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQED-GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEcC-CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 577777889996 5999999999999999874 554578999999999999999998763 33444433
No 27
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.38 E-value=2.5e-06 Score=65.77 Aligned_cols=64 Identities=30% Similarity=0.336 Sum_probs=46.0
Q ss_pred CCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 107 VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 107 pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
++-..++|+|+ .-|+.||++|++.+.+ +++ .+.+++||++++|+|.+|.....++++...+.+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~---~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI---DGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE---TTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEE---CCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 44457899996 5999999999999977 356 6899999999999999999988876676665543
No 28
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.37 E-value=3.3e-06 Score=69.81 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=49.8
Q ss_pred ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEe
Q 045405 110 INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFN 177 (240)
Q Consensus 110 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~ 177 (240)
+...|.|.+ .|+-|+++|++.+.+.+.+++.....+++||++++|+|..||+.-..+....++=+|.
T Consensus 84 f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~ 150 (157)
T PF03079_consen 84 FFEEHTHED-EEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK 150 (157)
T ss_dssp HCS-EEESS--EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred hheeEecCh-heEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence 457899965 9999999999999999887776667999999999999999999754445566665553
No 29
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.32 E-value=1.9e-06 Score=74.65 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=62.6
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
+..+..++++||+.+|.|.|. ..|+++|++|+.. ++ ...+.+||++..|.|..|...+.++++++++++.
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DE-----TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL 195 (215)
T ss_pred CcEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cC-----CCccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence 356789999999999999995 5899999999953 33 2367999999999999999999988899999988
Q ss_pred eCC
Q 045405 177 NTQ 179 (240)
Q Consensus 177 ~s~ 179 (240)
+.+
T Consensus 196 dap 198 (215)
T TIGR02451 196 DAP 198 (215)
T ss_pred cCC
Confidence 754
No 30
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.32 E-value=4.2e-06 Score=62.31 Aligned_cols=71 Identities=34% Similarity=0.395 Sum_probs=53.7
Q ss_pred ceEEEEEEEcCCcccCC-ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405 97 GVALFRIDLDVGGINPP-HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 97 gls~~~v~l~pGg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (240)
.++...++|+||+.-++ +.. +..-++||++|.+++.+. +. +..+.+||++.+|+|-.-.+.|.++++|+++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti~---~~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTIH---ET--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE---SEEEEEEEEESEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEEc---Cc--EEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 46788999999998665 555 568888999999999984 34 6789999999999999999999999999876
No 31
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.31 E-value=1.1e-06 Score=65.65 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=51.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP 174 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (240)
|..+..++++||+..|.|.|+. .|.+|||+|++.. .++ ++.+||.+..|.|..|.... ++.+.++.
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d----~~~-----~~~~G~~~~~p~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSD----GDG-----RYGAGDWLRLPPGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEE----TTC-----EEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred cCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEE----CCc-----cCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence 5688899999999999999965 7888999999873 222 45999999999999999884 45666653
No 32
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.23 E-value=1.8e-05 Score=68.90 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=51.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
.|+.....+.. .. .+||-+..|+.||++|++++.+ +|+ ++.+++||++++|+|..|.+...+ .++++.+.
T Consensus 156 ~m~aGf~~~~~-~s--f~wtl~~dEi~YVLEGe~~l~I---dG~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~ 225 (233)
T PRK15457 156 SMAAGFMQWEN-AF--FPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA 225 (233)
T ss_pred ceeeEEEEEec-Cc--cceeccceEEEEEEEeEEEEEE---CCE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence 35555555554 22 3466678999999999999998 366 789999999999999995554443 55555444
No 33
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.20 E-value=1.3e-05 Score=66.55 Aligned_cols=73 Identities=12% Similarity=0.231 Sum_probs=60.0
Q ss_pred cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCcee
Q 045405 111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD 185 (240)
Q Consensus 111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~ 185 (240)
..-|.|. .+|+-|++.|++...+..++|+.+...+.+||.+.+|+|.-||+.-..+...+++=.|+ ..+|.+-
T Consensus 88 ~~EH~H~-d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWVa 160 (181)
T COG1791 88 LQEHLHT-DDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWVA 160 (181)
T ss_pred HHHhccC-CceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCcee
Confidence 3569995 59999999999999999999999999999999999999999999765445555555553 5667654
No 34
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.10 E-value=1.5e-05 Score=71.95 Aligned_cols=60 Identities=20% Similarity=0.107 Sum_probs=49.4
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
.-.-.|..+.++|||. .-|+.|+++|++.+.+ +|+ ...+++||+++++.|.+|.....++
T Consensus 30 ~~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i---~g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 30 IEFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLI---NNE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEeeCCCCCCCCCccc-cEEEEEecCCcEEEEE---CCE--EEEEcCCcEEEEecCCcccccccCC
Confidence 3445667788999995 5999999999998776 466 6799999999999999998765443
No 35
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.09 E-value=1.1e-05 Score=64.68 Aligned_cols=66 Identities=23% Similarity=0.325 Sum_probs=53.5
Q ss_pred Cccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 108 GGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 108 Gg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
|++. --|||.++.|++.|++|+..+.+..++|+ +..+.+||++++|+|+-|.-.. ...+..++..+
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~rl~-sS~DF~VvGaY 118 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCRLH-SSADFQVVGAY 118 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCccccccc-CCCCeEEEccc
Confidence 4443 35999999999999999999999988888 6789999999999999997543 44556655544
No 36
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.06 E-value=2.4e-05 Score=71.95 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=65.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
.|....-.|.||...++|-|. +..+.||++|++....+ +|+ ....++||+|+.|.+..|...|.|++++.++.++
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V--~g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l 154 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAV--DGE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL 154 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEE--CCE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence 456667789999999999994 68999999999965666 366 6789999999999999999999999998887666
Q ss_pred eC
Q 045405 177 NT 178 (240)
Q Consensus 177 ~s 178 (240)
+.
T Consensus 155 D~ 156 (335)
T TIGR02272 155 DI 156 (335)
T ss_pred CH
Confidence 53
No 37
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.01 E-value=8.1e-05 Score=58.91 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=72.1
Q ss_pred CccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405 94 NTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 94 ~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (240)
.+.|+|+-...+.+|.-...||- +.-|-+|+++|++++...+ +|+ .+.+++|.+.+..+--.|+..... ++.++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~v 104 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLV 104 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEecC--CEEEE
Confidence 35689999999999999999997 4589999999999998875 477 689999999999999999998743 89999
Q ss_pred EEEeCCCCCc
Q 045405 174 PIFNTQNPGV 183 (240)
Q Consensus 174 ~~~~s~~Pg~ 183 (240)
++||.+--|.
T Consensus 105 CVFnPpltG~ 114 (126)
T PF06339_consen 105 CVFNPPLTGR 114 (126)
T ss_pred EEcCCCCcCc
Confidence 9998654443
No 38
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=98.00 E-value=2.2e-05 Score=69.43 Aligned_cols=72 Identities=25% Similarity=0.399 Sum_probs=46.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (240)
|.+..++++++|-..|||+| .+++-.|||+|.+..+ +.+....-|.+|..+..|+|..|+....+++.+.++
T Consensus 35 g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 35 GPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp S-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 78899999999999999999 5799999999987653 223335679999999999999999876665544443
No 39
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.97 E-value=6.6e-05 Score=66.34 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=43.7
Q ss_pred CcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405 108 GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV 165 (240)
Q Consensus 108 Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (240)
+...++||| +..|++||++|++.+.+ +|+ ...+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NGK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCccc-ccEEEEEEEeceEEEEE---CCE--EEEECCCcEEEeCCCCccceeee
Confidence 335689999 46999999999999887 466 67999999999999999976544
No 40
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.91 E-value=0.00021 Score=57.21 Aligned_cols=96 Identities=19% Similarity=0.155 Sum_probs=54.5
Q ss_pred CCceEEEecccCCCCCCccceEEEEEE-EcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCC-CEEEeC
Q 045405 78 FKRAVTFGDVFGFPAVNTQGVALFRID-LDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPG-KVFLIP 155 (240)
Q Consensus 78 ~G~~v~~~~~~~~P~l~~~gls~~~v~-l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~G-Dv~v~P 155 (240)
..|.++.+......... =-.+..+. .++|.....|+|....|+++|++|+..+.+.+..++ .+..|..- ..+.+|
T Consensus 14 ~RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ip 90 (131)
T PF05523_consen 14 ERGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIP 90 (131)
T ss_dssp TTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-
T ss_pred CCCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEEC
Confidence 35567776655333233 12445553 445555999999999999999999999998765433 46677555 588999
Q ss_pred CCCeEEEEecCCCCEEEEEEEeC
Q 045405 156 RALVHFQLNVGNEPATFIPIFNT 178 (240)
Q Consensus 156 ~G~~H~~~N~G~~~a~~i~~~~s 178 (240)
+|+.|.+.|.+++ +++++ +.+
T Consensus 91 pg~w~~~~~~s~~-svlLv-~as 111 (131)
T PF05523_consen 91 PGVWHGIKNFSED-SVLLV-LAS 111 (131)
T ss_dssp TT-EEEEE---TT--EEEE-EES
T ss_pred CchhhHhhccCCC-cEEEE-EcC
Confidence 9999999999877 66665 444
No 41
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.87 E-value=5.5e-05 Score=67.39 Aligned_cols=56 Identities=34% Similarity=0.216 Sum_probs=46.1
Q ss_pred cCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
.+..-.++|||+ ..|++||++|++++.+ +|+ .+.+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~H~-~~ei~~i~~G~~~~~i---~~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 26 YPQETFVEHTHQ-FCEIVIVWRGNGLHVL---NDH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CCCCCCcccccc-ceeEEEEecCceEEEE---CCe--eeeecCCeEEEEcCCCcccccccCC
Confidence 333446799995 5999999999999887 356 6899999999999999999876543
No 42
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.86 E-value=7.7e-05 Score=67.54 Aligned_cols=55 Identities=31% Similarity=0.276 Sum_probs=45.8
Q ss_pred CCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 107 VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 107 pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
|....++|||+ ..|++||++|++...+ +++ .+.+++||++++|+|..|.+....+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v---~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVL---NDR--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEE---CCE--EEeecCCeEEEECCCCeecccccCC
Confidence 33346899995 6999999999999887 355 6899999999999999999876444
No 43
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.81 E-value=6.8e-05 Score=66.31 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=47.3
Q ss_pred CcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEE
Q 045405 108 GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPAT 171 (240)
Q Consensus 108 Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (240)
+...++|||.+.-|++|+++|++.+.+ +++ ...+++||++++|+|..|.+...++....
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~ 91 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQL---DEH--EYSEYAPCFFLTPPSVPHGFVTDLDADGH 91 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEE---CCE--EEEecCCeEEEeCCCCccccccCCCcceE
Confidence 345789999645899999999998776 355 67999999999999999998765544333
No 44
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.76 E-value=9.6e-05 Score=53.33 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=44.8
Q ss_pred eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405 98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL 163 (240)
Q Consensus 98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~ 163 (240)
++.......||.. ..++. ..|++|||+|++++.. .+|+ ..++++||++++|+|..-.+.
T Consensus 7 ~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~--~~G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITD--EDGE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEE--TTTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEE--CCCC--EEEEcCCcEEEECCCCEEEEE
Confidence 5666778888763 33444 3899999999999875 4577 689999999999999866554
No 45
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.72 E-value=5.6e-05 Score=62.38 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=49.6
Q ss_pred ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecC
Q 045405 110 INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG 166 (240)
Q Consensus 110 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G 166 (240)
+.+.|.|++ +|+-||++|++..-+-+.+++....-+++||.+++|+|.-|.+.-+.
T Consensus 85 FfEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 85 FFEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred HHHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence 457999976 89999999999999998888877888999999999999999986543
No 46
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.69 E-value=0.00014 Score=64.35 Aligned_cols=56 Identities=29% Similarity=0.242 Sum_probs=45.8
Q ss_pred cCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
-|+...++|||+ .-|++||++|++++.+ +++ .+.+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i---~~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVL---NER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEE---CCE--EEeecCCcEEEECCCCcccccccCC
Confidence 334446899995 6999999999999887 355 6899999999999999998865443
No 47
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.67 E-value=7.5e-05 Score=67.18 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=79.0
Q ss_pred CCCccCcCCceEEEecccCCCCCCccc-e----EEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEE
Q 045405 71 DPTTFDVFKRAVTFGDVFGFPAVNTQG-V----ALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKV 145 (240)
Q Consensus 71 ~~~~~~~~G~~v~~~~~~~~P~l~~~g-l----s~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~ 145 (240)
.+......++ ++.+-..+.|+|++.. + -...--|.||-..|.|-|. ...+-||++|++-.++|+ |+ ...
T Consensus 61 sgeli~~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~Vd--Ge--r~~ 134 (351)
T COG3435 61 SGELISAREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVD--GE--RTP 134 (351)
T ss_pred hhhccCcccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEeccceeEeec--Cc--eee
Confidence 4443334444 4555567888888653 1 1344568899999999995 589999999999988885 44 468
Q ss_pred ECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeC
Q 045405 146 LTPGKVFLIPRALVHFQLNVGNEPATFIPIFNT 178 (240)
Q Consensus 146 l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s 178 (240)
+++||+++.|++..|.--|.|++|++++-.++.
T Consensus 135 M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 135 MEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred ccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence 999999999999999999999999999866653
No 48
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.65 E-value=0.00011 Score=64.60 Aligned_cols=53 Identities=23% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405 107 VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV 165 (240)
Q Consensus 107 pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (240)
+....++||| +..|++||++|.+++.+. ++ .+.+++||++++|+|..|.+.+.
T Consensus 24 ~~~~~~~H~H-~~~ei~~v~~G~~~~~i~---~~--~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHH-DFHEIVIVEHGTGIHVFN---GQ--PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred cccccccccc-CceeEEEEecCceeeEec---CC--cccccCCcEEEECCCccchhhhc
Confidence 3455789999 459999999999998874 44 67999999999999999987654
No 49
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.58 E-value=0.0006 Score=58.90 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=64.1
Q ss_pred eEEEEEEEcCCc-ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 98 VALFRIDLDVGG-INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 98 ls~~~v~l~pGg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
++-..+++.|+| .-.|-.-++++.++||++|++.+.+. |+ ++.|++|+..++|+|..|...|...+++.+..+-
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~---G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE---GK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc---Ce--EEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 455688998877 66777778999999999999999873 66 7899999999999999999999999988877654
Q ss_pred e
Q 045405 177 N 177 (240)
Q Consensus 177 ~ 177 (240)
.
T Consensus 136 k 136 (264)
T COG3257 136 K 136 (264)
T ss_pred e
Confidence 3
No 50
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.42 E-value=0.00057 Score=62.98 Aligned_cols=88 Identities=14% Similarity=0.015 Sum_probs=64.7
Q ss_pred cCCceEEEecccCCCC-CCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeC
Q 045405 77 VFKRAVTFGDVFGFPA-VNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIP 155 (240)
Q Consensus 77 ~~G~~v~~~~~~~~P~-l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P 155 (240)
..|..+..++..+-+. ..++ +.....|++|....+|-|. ...+++|++|+++..+. ++ +.+.++||+|++|
T Consensus 230 ~~g~~l~y~NP~TG~~~~pti--~~~~q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig---~~--~~~W~~gD~f~vP 301 (335)
T TIGR02272 230 WHGLKLRYVNPATGGYPMPTI--GAFIQLLPKGFRTATYRST-DATVFCVVEGRGQVRIG---DA--VFRFSPKDVFVVP 301 (335)
T ss_pred CceEEEEEeCCCCCCCcchhH--HHHHhccCCCCCCCCcccc-ccEEEEEEeCeEEEEEC---CE--EEEecCCCEEEEC
Confidence 3455567777655554 3433 3344678888899999884 58999999999999883 55 6789999999999
Q ss_pred CCCeEEEEecCCCCEEEEE
Q 045405 156 RALVHFQLNVGNEPATFIP 174 (240)
Q Consensus 156 ~G~~H~~~N~G~~~a~~i~ 174 (240)
.-..|...|. +++.++.
T Consensus 302 sW~~~~h~a~--~da~Lf~ 318 (335)
T TIGR02272 302 SWHPVRFEAS--DDAVLFS 318 (335)
T ss_pred CCCcEecccC--CCeEEEE
Confidence 9988877664 4555443
No 51
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.28 E-value=0.00066 Score=55.78 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=44.2
Q ss_pred eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405 98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP 174 (240)
Q Consensus 98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (240)
|+...++++.. +.-|.-.-+|+.||++|++.+.. +|+ ....++||+++||+|.--.+... ..++++.
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Y 143 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFY 143 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEE
Confidence 45555555553 34577677999999999998874 477 67899999999999986655433 2344443
No 52
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.21 E-value=0.0038 Score=50.94 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=45.8
Q ss_pred EcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCC
Q 045405 105 LDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG 182 (240)
Q Consensus 105 l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg 182 (240)
=.|+.-.--|..+ .+|++|-++|...+.+++. |+.....+++||++..|++++|.-+-.. +.+-+++-....++
T Consensus 40 GGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~-g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~R~~~ 113 (151)
T PF06052_consen 40 GGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED-GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERKRPEG 113 (151)
T ss_dssp ESSB--SSEEE-S-S-EEEEEEES-EEEEEEET-TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE---TT
T ss_pred cCCCCCCccccCC-cceEEEEEeCcEEEEEEeC-CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEeccCCC
Confidence 3455555668886 5999999999999999875 7767899999999999999999987653 33444444333333
No 53
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.0067 Score=50.93 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=53.7
Q ss_pred CCcccCCccCCCC-CeEEEEeeCEEEEEEEccC------CeEEEEEECCC--CEEEeCCCCeEEEEecCCCCE
Q 045405 107 VGGINPPHTHPRG-TEAGIVTRGTVLVGLVTTN------NTFFSKVLTPG--KVFLIPRALVHFQLNVGNEPA 170 (240)
Q Consensus 107 pGg~~~pH~Hp~a-~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~G--Dv~v~P~G~~H~~~N~G~~~a 170 (240)
||-++..|||..- .+++.|++|++....+|-. |+....++.+- ..+.+|+|..|.++|.+++..
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~ 126 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAE 126 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceE
Confidence 8889999999777 8999999999998888743 35555667655 899999999999999998763
No 54
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=97.05 E-value=0.01 Score=49.89 Aligned_cols=77 Identities=19% Similarity=0.218 Sum_probs=58.5
Q ss_pred cCCcccCCccCC--CCCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405 106 DVGGINPPHTHP--RGTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 106 ~pGg~~~pH~Hp--~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (240)
.+|.++.+|+|. .-..+++|++|++...++|.. |+.....|.+ +..++||+|+.|.+.+.+++ +.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 668889999983 358999999999999999853 5666777876 66999999999999998866 444433
Q ss_pred EeC-CCCCc
Q 045405 176 FNT-QNPGV 183 (240)
Q Consensus 176 ~~s-~~Pg~ 183 (240)
.+. -+|+.
T Consensus 131 ~~~~y~p~~ 139 (176)
T TIGR01221 131 CTDYYAPEY 139 (176)
T ss_pred CCCCcCccc
Confidence 332 34544
No 55
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.97 E-value=0.006 Score=51.35 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=55.6
Q ss_pred EcCCcccCCccCCCC---CeEEEEeeCEEEEEEEccC------CeEEEEEECCCC--EEEeCCCCeEEEEecCCCCEEEE
Q 045405 105 LDVGGINPPHTHPRG---TEAGIVTRGTVLVGLVTTN------NTFFSKVLTPGK--VFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 105 l~pGg~~~pH~Hp~a---~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~GD--v~v~P~G~~H~~~N~G~~~a~~i 173 (240)
-.+|.++.+|+|..- ..++.|++|++...++|-. |+.....|.+++ .++||+|+.|.+.+.+++ +.++
T Consensus 50 s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~-a~v~ 128 (176)
T PF00908_consen 50 SKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD-AEVL 128 (176)
T ss_dssp EETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE-EEEE
T ss_pred ccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc-eEEE
Confidence 345888999999664 5899999999999998832 677788887765 799999999999998766 4443
Q ss_pred EEEe-CCCCCce
Q 045405 174 PIFN-TQNPGVS 184 (240)
Q Consensus 174 ~~~~-s~~Pg~~ 184 (240)
...+ .-+|+..
T Consensus 129 Y~~t~~y~p~~e 140 (176)
T PF00908_consen 129 YKVTNYYDPEDE 140 (176)
T ss_dssp EEESS---GGGE
T ss_pred EecCCccCcccc
Confidence 3333 2345443
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.92 E-value=0.0079 Score=47.28 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=48.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV 165 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (240)
.+......-.||.. +++-...|+.++|+|++++.- .+|+ ..++++||++++|+|..=.+.-.
T Consensus 44 ~~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T~--d~Ge--~v~~~aGD~~~~~~G~~g~W~V~ 105 (116)
T COG3450 44 QVETGIWECTPGKF---RVTYDEDEFCHILEGRVEVTP--DGGE--PVEVRAGDSFVFPAGFKGTWEVL 105 (116)
T ss_pred CeeEeEEEecCccc---eEEcccceEEEEEeeEEEEEC--CCCe--EEEEcCCCEEEECCCCeEEEEEe
Confidence 45666777888764 555556999999999998763 4466 67999999999999987666543
No 57
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.79 E-value=0.024 Score=47.47 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=57.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe----E----EEEEECCCCEEEeCCCCeEEEEecC-C
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT----F----FSKVLTPGKVFLIPRALVHFQLNVG-N 167 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~----~----~~~~l~~GDv~v~P~G~~H~~~N~G-~ 167 (240)
.+.+..+...||...+.|=|.++.-++.|++|+++.......+. . ....+..|.+.+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 47788899999999999999777778899999988776543221 1 2345688888888999999999886 7
Q ss_pred CCEEEEEEEeC
Q 045405 168 EPATFIPIFNT 178 (240)
Q Consensus 168 ~~a~~i~~~~s 178 (240)
++++-+=++..
T Consensus 154 ~~avSLHvYsp 164 (175)
T PF05995_consen 154 EPAVSLHVYSP 164 (175)
T ss_dssp S-EEEEEEEES
T ss_pred CCEEEEEEcCC
Confidence 88887766654
No 58
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.64 E-value=0.0073 Score=54.62 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=66.4
Q ss_pred cCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC
Q 045405 77 VFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR 156 (240)
Q Consensus 77 ~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~ 156 (240)
-.|..+..+|..+=--.. --|....--|+||-...+|-|.+ +-+.-|.+|++++.+ +|+ ++..++||+|++|.
T Consensus 241 ~dG~~~ryvNP~TGg~~m-ptI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~I---g~~--rf~~~~~D~fvVPs 313 (351)
T COG3435 241 FDGYKMRYVNPVTGGYAM-PTIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTII---GGE--RFDWSAGDIFVVPS 313 (351)
T ss_pred CCcceEEEecCCCCCCcC-chHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEE---CCE--EeeccCCCEEEccC
Confidence 567777777654321111 12334445678888888998865 788899999999887 366 67889999999999
Q ss_pred CCeEEEEecCCCCEEEEEE
Q 045405 157 ALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 157 G~~H~~~N~G~~~a~~i~~ 175 (240)
=..|...| |.+++.++++
T Consensus 314 W~~~~~~~-gs~da~LFsf 331 (351)
T COG3435 314 WAWHEHVN-GSEDAVLFSF 331 (351)
T ss_pred cceeeccc-CCcceEEEec
Confidence 99999888 4777777653
No 59
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.58 E-value=0.022 Score=46.69 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=47.2
Q ss_pred eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405 98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP 174 (240)
Q Consensus 98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (240)
+++....+++ ...++ --+-+|+-||++|++.+... |+ +..-++||++++|+|.---+--.|+ +.++-
T Consensus 100 l~aG~m~~~~-~tf~w--tl~yDe~d~VlEGrL~V~~~---g~--tv~a~aGDvifiPKgssIefst~ge--a~fly 166 (176)
T COG4766 100 LGAGLMEMKN-TTFPW--TLNYDEIDYVLEGRLHVRID---GR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLY 166 (176)
T ss_pred cccceeeecc-ccCcc--eecccceeEEEeeeEEEEEc---CC--eEecCCCcEEEecCCCeEEEeccce--EEEEE
Confidence 4455556666 44433 33568999999999998863 55 5678999999999998766655444 55543
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.16 E-value=0.03 Score=47.94 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=48.6
Q ss_pred EEEEEEcC-CcccCCccCCCCCeEEEEeeCEEEEEEEccCC-----------------------------------eEEE
Q 045405 100 LFRIDLDV-GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-----------------------------------TFFS 143 (240)
Q Consensus 100 ~~~v~l~p-Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-----------------------------------~~~~ 143 (240)
...+-+.+ |...+.|+.+ ..-+..+++|+=++.+..+.. +.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 44566666 5578899986 578999999998888887641 1246
Q ss_pred EEECCCCEEEeCCCCeEEEEecCCCC
Q 045405 144 KVLTPGKVFLIPRALVHFQLNVGNEP 169 (240)
Q Consensus 144 ~~l~~GDv~v~P~G~~H~~~N~G~~~ 169 (240)
.+|++||+++||+|..|++.|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 79999999999999999999984344
No 61
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.00 E-value=0.03 Score=53.13 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=37.4
Q ss_pred CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405 113 PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP 174 (240)
Q Consensus 113 pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (240)
.-.+-+++|++++.+|++++.- +-|+ ..+++||+++||+|+.+.+.=. +++..+.
T Consensus 140 ~f~NaDGD~Li~~q~G~l~l~T--e~G~---L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi 194 (424)
T PF04209_consen 140 AFRNADGDELIFPQQGSLRLET--EFGR---LDVRPGDYVVIPRGTRFRVELP--GPARGYI 194 (424)
T ss_dssp EEEESSEEEEEEEEES-EEEEE--TTEE---EEE-TTEEEEE-TT--EEEE-S--SSEEEEE
T ss_pred ceEcCCCCEEEEEEECCEEEEe--cCee---EEEcCCeEEEECCeeEEEEEeC--CCceEEE
Confidence 3446788999999999998774 3455 4799999999999999988765 4555443
No 62
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.36 E-value=0.18 Score=46.00 Aligned_cols=67 Identities=21% Similarity=0.173 Sum_probs=43.6
Q ss_pred EEEEEEEcCCc--ccCCccCCCCCeEEEEeeCEEEEEEEccCC------------------eEEEEEECCCCEEEeCCCC
Q 045405 99 ALFRIDLDVGG--INPPHTHPRGTEAGIVTRGTVLVGLVTTNN------------------TFFSKVLTPGKVFLIPRAL 158 (240)
Q Consensus 99 s~~~v~l~pGg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g------------------~~~~~~l~~GDv~v~P~G~ 158 (240)
..+-+.+.|+| -+.|||=. .+-+++=++|+=+..+..+.. .....+|++||++++|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34556788888 78999874 366666677876666654210 1236899999999999999
Q ss_pred eEEEEecC
Q 045405 159 VHFQLNVG 166 (240)
Q Consensus 159 ~H~~~N~G 166 (240)
.|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999987
No 63
>PF12852 Cupin_6: Cupin
Probab=94.91 E-value=0.13 Score=42.83 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=35.6
Q ss_pred CeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecC
Q 045405 120 TEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG 166 (240)
Q Consensus 120 ~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G 166 (240)
.-+.+|++|+.++.+-+ .+. ...|++||++++|+|..|.+....
T Consensus 36 ~~fh~V~~G~~~l~~~~-~~~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPG-GGE--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcC-CCC--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 66779999999998632 133 679999999999999999995543
No 64
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.82 E-value=0.48 Score=45.07 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=45.4
Q ss_pred cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEe
Q 045405 111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFN 177 (240)
Q Consensus 111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~ 177 (240)
...-.+-+++|++++.+|++.+.-. -|+ ..+++||+++||+|+.+.+.=.|.....++..+.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTE--FGR---LLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEe--ccc---eEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 3445567889999999999988753 355 5889999999999999888655533344444444
No 65
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.71 E-value=0.26 Score=46.92 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=43.2
Q ss_pred cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405 111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP 174 (240)
Q Consensus 111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (240)
...-.+-+++|++++.+|++++.- +-|+ ..+++||++|||+|+.+.+.= .+.+++.+.
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRG~~frv~l-~~gp~rgyi 203 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLAT--ELGV---LDVEPGEIAVIPRGVKFRVEL-PDGPARGYV 203 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEE--eccc---eEecCCCEEEEcCccEEEEec-CCCCeeEEE
Confidence 334556788999999999998774 3354 578999999999999988763 334555443
No 66
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=94.64 E-value=0.21 Score=42.79 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=69.3
Q ss_pred ccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEE
Q 045405 74 TFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFL 153 (240)
Q Consensus 74 ~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v 153 (240)
.....|+++..+...+ +-...++++.+.||..+|-|+|- .-|.+.|++|.. .|++| ++.+||+..
T Consensus 109 ~W~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~----sde~G-----~y~vgD~~~ 173 (216)
T COG3806 109 RWLGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAF----SDENG-----EYLVGDFTL 173 (216)
T ss_pred eeecCCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeecc----ccCCC-----ccccCceee
Confidence 3456677666654333 22567999999999999999994 599999999974 45655 568999999
Q ss_pred eCCCCeEEEEecCCCCEEEEEEEeCC
Q 045405 154 IPRALVHFQLNVGNEPATFIPIFNTQ 179 (240)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~i~~~~s~ 179 (240)
-+.+.-|.-.-..+.++..+++++.+
T Consensus 174 ~d~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 174 ADGTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred cCCccccccccCCCCCceEEEEcCCC
Confidence 99999998666667788888877643
No 67
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=94.54 E-value=0.13 Score=39.76 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=44.8
Q ss_pred CcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC--CCeEEEEecCC-CCEEEE
Q 045405 108 GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR--ALVHFQLNVGN-EPATFI 173 (240)
Q Consensus 108 Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~--G~~H~~~N~G~-~~a~~i 173 (240)
+.-.++|-|.+-+-+.||++|+++-. |+.|. ..++++||+-+.-+ |+.|.-.|.++ +++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 44568899977666779999998654 55566 56899999887755 57899999887 666654
No 68
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=94.42 E-value=0.28 Score=42.73 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=42.8
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEee-CEEEEEEEccC--C--------------eEE------EEEECCCCEEEeCCCC
Q 045405 102 RIDLDVGGINPPHTHPRGTEAGIVTR-GTVLVGLVTTN--N--------------TFF------SKVLTPGKVFLIPRAL 158 (240)
Q Consensus 102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~--g--------------~~~------~~~l~~GDv~v~P~G~ 158 (240)
.+.+.+|+..|.|+|..-.|=++.-- |.+.+.+...+ + +.+ ..+|++|+.+.+++|.
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 46778999999999998888887775 57766665432 2 111 3689999999999999
Q ss_pred eEEEEecCCC
Q 045405 159 VHFQLNVGNE 168 (240)
Q Consensus 159 ~H~~~N~G~~ 168 (240)
.|++...+..
T Consensus 171 yH~Fw~e~g~ 180 (225)
T PF07385_consen 171 YHWFWGEGGD 180 (225)
T ss_dssp EEEEEE-TTS
T ss_pred eeeEEecCCC
Confidence 9999875444
No 69
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=94.37 E-value=0.21 Score=37.57 Aligned_cols=71 Identities=24% Similarity=0.284 Sum_probs=34.5
Q ss_pred EEEcCCcccCCccCCCCC--eEEEEe--eCEEEEEEEccCC------------------eEEEEEECCCCEEEeCCCCeE
Q 045405 103 IDLDVGGINPPHTHPRGT--EAGIVT--RGTVLVGLVTTNN------------------TFFSKVLTPGKVFLIPRALVH 160 (240)
Q Consensus 103 v~l~pGg~~~pH~Hp~a~--Ei~yVl--~G~~~v~~v~~~g------------------~~~~~~l~~GDv~v~P~G~~H 160 (240)
...++|+..++|.|+++. -++||- ++...+.+.+++. .......++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 456788899999998752 222332 2333344444321 234568899999999999999
Q ss_pred EEE-ecCCCCEEEE
Q 045405 161 FQL-NVGNEPATFI 173 (240)
Q Consensus 161 ~~~-N~G~~~a~~i 173 (240)
... |.++++-+.|
T Consensus 85 ~v~p~~~~~~Risi 98 (101)
T PF13759_consen 85 GVPPNNSDEERISI 98 (101)
T ss_dssp EE----SSS-EEEE
T ss_pred eccCcCCCCCEEEE
Confidence 975 4455443433
No 70
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.21 E-value=0.38 Score=45.80 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=41.7
Q ss_pred CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405 113 PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 113 pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (240)
.-.+-+++|++++.+|++.+.- +-|+ ..+++||+++||+|+.+.+.= .+++++.+
T Consensus 141 ~f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRG~~frv~l-~~gp~rgy 195 (435)
T PLN02658 141 AFCNADGDFLIVPQQGRLWIKT--ELGK---LQVSPGEIVVIPRGFRFAVDL-PDGPSRGY 195 (435)
T ss_pred eeecCCCCEEEEEEeCCEEEEE--eccc---eEecCCCEEEecCccEEEEec-CCCCeeEE
Confidence 3556789999999999998774 3355 578999999999999987753 23454444
No 71
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=94.18 E-value=0.22 Score=44.10 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=38.1
Q ss_pred CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 113 PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 113 pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
||-. +.-++.++++|++.+.+ +++ .+.+++||++++|+|.+|......+
T Consensus 44 ~~~~-~~~~i~~~~~G~~~~~~---~~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGM-KGYILNLTIRGQGVIFN---GGR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCc-cceEEEEEEeccEEEec---CCe--eEecCCCCEEEECCCCceeeccCCC
Confidence 3443 34688999999998764 355 6799999999999999998765443
No 72
>COG1741 Pirin-related protein [General function prediction only]
Probab=93.93 E-value=0.2 Score=45.13 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=48.2
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCC--CeEEEEec
Q 045405 102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRA--LVHFQLNV 165 (240)
Q Consensus 102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G--~~H~~~N~ 165 (240)
...+.||.-++||-|.+-+-+.||++|+++-. |+.|. ...+++||+-..-+| +.|.-.|.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~ 109 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNP 109 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCC
Confidence 45689999999999988777779999998765 44455 578999999887654 68888886
No 73
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.76 E-value=0.36 Score=43.19 Aligned_cols=62 Identities=10% Similarity=-0.034 Sum_probs=48.3
Q ss_pred cCCcccCCccC-CCCCeEEEEeeCEEEEEEEccCCeE-EEEEECC-CCEEEeCCCCeEEEEecCC
Q 045405 106 DVGGINPPHTH-PRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTP-GKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 106 ~pGg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~-GDv~v~P~G~~H~~~N~G~ 167 (240)
-|+++..+|-| +...|.+.|++|++.+.+.++++.. ....+.+ ++.-++|++..|...-..+
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~ 83 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASD 83 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCC
Confidence 36788899999 7888999999999999998887743 3345555 4565799999999887543
No 74
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=93.61 E-value=1.8 Score=37.15 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=86.4
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (240)
+.......+++|..+-..-. ....+++|++|.+.+...+++|+. ....+.+||++-+..+..+.....-.++.+++.+
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~i 113 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRLI 113 (230)
T ss_pred cceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEEE
Confidence 45667788888886533222 457899999999999998888763 3455689998876555433222222234444322
Q ss_pred Ee-------CCCCCcee----------------------------ccchhh------cC----CCCCCHHHHHhhcCCCH
Q 045405 176 FN-------TQNPGVSD----------------------------SIGTLF------DT----TPPVPNEVLTKSFRVGD 210 (240)
Q Consensus 176 ~~-------s~~Pg~~~----------------------------~~~~lf------~s----~~~~p~~vla~af~v~~ 210 (240)
-. ..+|.... +...+. +. ...++.+.||..+|++.
T Consensus 114 ~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisr 193 (230)
T PRK09391 114 KRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLGLTI 193 (230)
T ss_pred EHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCH
Confidence 11 12442110 111111 10 01467899999999999
Q ss_pred HHHHHHHhhcCCCceEEecCCeeee
Q 045405 211 DVINTIRAARAQSSWINILDGRSIS 235 (240)
Q Consensus 211 ~~v~~l~~~~~~~~~i~~~~~~~~~ 235 (240)
+++.++.+.+...+.|...+++++.
T Consensus 194 etlsR~L~~L~~~GlI~~~~~~~i~ 218 (230)
T PRK09391 194 ETVSRALSQLQDRGLIGLSGARQIE 218 (230)
T ss_pred HHHHHHHHHHHHCCcEEecCCceEE
Confidence 9999998888888888876655554
No 75
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.47 E-value=0.66 Score=38.25 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=42.4
Q ss_pred EEEEEEEcCCcccCCccCCCCCeEE----EEe-eCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405 99 ALFRIDLDVGGINPPHTHPRGTEAG----IVT-RGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 99 s~~~v~l~pGg~~~pH~Hp~a~Ei~----yVl-~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (240)
.+....+.||+.+.||.-+....+- .++ .+...+.+ +++ ....++|+++++--...|...|.|+++-+.+
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L 155 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GGE--TRHWREGECWVFDDSFEHEVWNNGDEDRVVL 155 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TTE--EEB--CTEEEEE-TTS-EEEEESSSS-EEEE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CCe--EEEeccCcEEEEeCCEEEEEEeCCCCCEEEE
Confidence 4566788999999999876433321 122 12233333 234 5678999999999999999999998764444
No 76
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.08 E-value=0.74 Score=40.83 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=46.1
Q ss_pred ceEEEEEEEcCCccc-----CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 97 GVALFRIDLDVGGIN-----PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 97 gls~~~v~l~pGg~~-----~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
++.+.++...+..+. ..|.+.+.-.++++++|++.+.. +|+ ...+++||++++|.+.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DDR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CCe--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 456666666665331 23444444557788999998876 356 6789999999999999998765443
No 77
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=0.066 Score=51.37 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=57.3
Q ss_pred cCCceEEEecccCCCCC--------Ccc-c-eEEEEEEEcCCc--ccCCccCCCCCeEEEEeeCEEEEEEEccCC-----
Q 045405 77 VFKRAVTFGDVFGFPAV--------NTQ-G-VALFRIDLDVGG--INPPHTHPRGTEAGIVTRGTVLVGLVTTNN----- 139 (240)
Q Consensus 77 ~~G~~v~~~~~~~~P~l--------~~~-g-ls~~~v~l~pGg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g----- 139 (240)
..|.++..+++..|-.- ++. | +--+-+.|.|-| -.+|||- +-+-++.=++|+=...+..|.-
T Consensus 285 q~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel 363 (629)
T KOG3706|consen 285 QKGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEEL 363 (629)
T ss_pred hcCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhh
Confidence 45667777776665421 110 1 122345666544 4899998 4467778889987766665431
Q ss_pred --------------e-EEEEEECCCCEEEeCCCCeEEEEec
Q 045405 140 --------------T-FFSKVLTPGKVFLIPRALVHFQLNV 165 (240)
Q Consensus 140 --------------~-~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (240)
+ ++...|++||+++||+|.+|-....
T Consensus 364 ~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~ 404 (629)
T KOG3706|consen 364 ALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTP 404 (629)
T ss_pred hhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeecccc
Confidence 1 2357899999999999999986543
No 78
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=92.91 E-value=0.5 Score=39.30 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=48.8
Q ss_pred eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEE--ccCC----eEEEEEECCCCEEEeCCCCeEEEEecCCCCEE
Q 045405 98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLV--TTNN----TFFSKVLTPGKVFLIPRALVHFQLNVGNEPAT 171 (240)
Q Consensus 98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v--~~~g----~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (240)
+++..+++.||...|+|-| +-.-++=|++|.=+-.+. +..+ ....+...+|+|- ..+|.+|.+.|+|.....
T Consensus 73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~ 150 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG 150 (191)
T ss_pred EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc
Confidence 7889999999999999999 567777888885332221 1111 0113456677776 334777777777655443
Q ss_pred EEEEE
Q 045405 172 FIPIF 176 (240)
Q Consensus 172 ~i~~~ 176 (240)
.|-++
T Consensus 151 aiHvy 155 (191)
T COG5553 151 AIHVY 155 (191)
T ss_pred eEEEE
Confidence 34333
No 79
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=92.87 E-value=0.61 Score=40.03 Aligned_cols=74 Identities=22% Similarity=0.228 Sum_probs=44.5
Q ss_pred EEEEEEcCCcccCCccCCCC--CeEEEEe--eCEEEEEEEccCC------------------eEEEEEECCCCEEEeCCC
Q 045405 100 LFRIDLDVGGINPPHTHPRG--TEAGIVT--RGTVLVGLVTTNN------------------TFFSKVLTPGKVFLIPRA 157 (240)
Q Consensus 100 ~~~v~l~pGg~~~pH~Hp~a--~Ei~yVl--~G~~~v~~v~~~g------------------~~~~~~l~~GDv~v~P~G 157 (240)
.-...+++|+....|.||++ +-++||- +|.+.+.+.++.. ......-++||+++||.-
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW 177 (201)
T ss_pred EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence 34566788999999999985 2233444 2222333333210 011234489999999999
Q ss_pred CeEEEE-ecCCCCEEEE
Q 045405 158 LVHFQL-NVGNEPATFI 173 (240)
Q Consensus 158 ~~H~~~-N~G~~~a~~i 173 (240)
+.|... |.++++-+-|
T Consensus 178 L~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 178 LRHEVPPNESEEERISV 194 (201)
T ss_pred CceecCCCCCCCCEEEE
Confidence 999975 5455543333
No 80
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=92.85 E-value=0.75 Score=40.11 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=55.2
Q ss_pred cceEEEEEEEcCCcccCC-ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405 96 QGVALFRIDLDVGGINPP-HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 96 ~gls~~~v~l~pGg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (240)
-.+-+..+.++||+..|- -+|- -+-=.||++|++...+. +. ...+++||.+..-+-.+.+.+..|......+
T Consensus 180 ~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn---~d--wv~V~aGD~mwm~A~cpQacyagG~g~frYL 252 (264)
T COG3257 180 FDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLN---NN--WVPVEAGDYIWMGAYCPQACYAGGRGAFRYL 252 (264)
T ss_pred cceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeec---Cc--eEEeecccEEEeeccChhhhccCCCCceEEE
Confidence 367888999999998764 3442 24457999999987763 23 6799999999999999999888776654443
No 81
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=92.45 E-value=3.9 Score=34.00 Aligned_cols=130 Identities=8% Similarity=0.041 Sum_probs=79.2
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EEEEEECCCCEEEeC----CCCeEEEEecCCCCEEEEEE
Q 045405 101 FRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FFSKVLTPGKVFLIP----RALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 101 ~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~~~~l~~GDv~v~P----~G~~H~~~N~G~~~a~~i~~ 175 (240)
....+++|..+-..-. ..+.+++|++|.+++...+.+|+ .....+.+||++-.. ....+...-.-.++..++.+
T Consensus 21 ~~~~~~kg~~l~~~g~-~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i 99 (211)
T PRK11753 21 HIHKYPAKSTLIHAGE-KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 99 (211)
T ss_pred eEEEeCCCCEEEeCCC-CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence 4667888886533222 35789999999999988777664 334578999998442 22222211112344444432
Q ss_pred Ee-------CCCCCcee----------------------------ccchhh--cC------C-----CCCCHHHHHhhcC
Q 045405 176 FN-------TQNPGVSD----------------------------SIGTLF--DT------T-----PPVPNEVLTKSFR 207 (240)
Q Consensus 176 ~~-------s~~Pg~~~----------------------------~~~~lf--~s------~-----~~~p~~vla~af~ 207 (240)
=. ..+|.... ++..+. .. . -.++.+-||+-+|
T Consensus 100 ~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG 179 (211)
T PRK11753 100 SYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVG 179 (211)
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhC
Confidence 11 13442210 011111 00 0 0477799999999
Q ss_pred CCHHHHHHHHhhcCCCceEEecCC
Q 045405 208 VGDDVINTIRAARAQSSWINILDG 231 (240)
Q Consensus 208 v~~~~v~~l~~~~~~~~~i~~~~~ 231 (240)
++.+++.++.+.....++|.+.++
T Consensus 180 ~tr~tvsR~l~~l~~~gii~~~~~ 203 (211)
T PRK11753 180 CSREMVGRVLKMLEDQGLISAHGK 203 (211)
T ss_pred CCHHHHHHHHHHHHHCCCEEecCC
Confidence 999999999998888888887654
No 82
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=92.33 E-value=0.11 Score=46.08 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=43.5
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
++.-..+.|+.|---.+|+|+. .|-.|||+|++..+.... .-...|.+|-.+.-|....|... .++++++++.-.
T Consensus 170 ~~~gll~kLPagf~g~i~~h~~-~eraVvI~G~~~~~~~~~---~~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRt 244 (251)
T PF14499_consen 170 QYTGLLLKLPAGFTGRIHTHAS-NERAVVISGELDYQSYGA---SNFGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRT 244 (251)
T ss_dssp EE-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEEE---ETTEEEEE-TT-EE--E-------EESS-EEEEEEE
T ss_pred ceeeEEEEcCCCCcCceeccCC-ceEEEEEEeEEEEeeccc---CCCccccCCcccccCCccccccc-ccCCCEEEEEEE
Confidence 3445667777777789999965 899999999998854321 11468999999999999999998 677888887654
Q ss_pred e
Q 045405 177 N 177 (240)
Q Consensus 177 ~ 177 (240)
+
T Consensus 245 d 245 (251)
T PF14499_consen 245 D 245 (251)
T ss_dssp S
T ss_pred C
Confidence 4
No 83
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=92.11 E-value=0.83 Score=39.27 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=61.3
Q ss_pred CCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC----------eEEEE-------EECCCC-EEEe
Q 045405 93 VNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN----------TFFSK-------VLTPGK-VFLI 154 (240)
Q Consensus 93 l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g----------~~~~~-------~l~~GD-v~v~ 154 (240)
.++..+++...-|+||+.+|+|=||+-+-+.-|+.|++.+.-.|--. +.... .-.+++ .+.-
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 34446888888999999999999999888889999999987654211 01011 123334 3444
Q ss_pred CCC--CeEEEEecCCCCEEEEEEEeC
Q 045405 155 PRA--LVHFQLNVGNEPATFIPIFNT 178 (240)
Q Consensus 155 P~G--~~H~~~N~G~~~a~~i~~~~s 178 (240)
|+. -+|.+.+.+ +++.++-++.-
T Consensus 119 P~~ggNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 119 PTSGGNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred cCCCCeeEEEEeCC-CCeEEEEEccC
Confidence 654 899999977 88998888864
No 84
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.01 E-value=2.2 Score=39.81 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=48.2
Q ss_pred ceEEEEEEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405 97 GVALFRIDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 97 gls~~~v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (240)
|+.+....+.. ++. ..-+..+.+|++|+.+|++++.-. -| ..++++||+.+||+|......-.+.+ +..+
T Consensus 124 g~~i~~y~~n~-sm~~~~f~NADge~Livpq~G~l~l~te--~G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy 194 (427)
T COG3508 124 GVAIHVYKVNE-SMTKRFFRNADGELLIVPQQGELRLKTE--LG---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGY 194 (427)
T ss_pred ceEEEEEEccc-cchhhhhhcCCCCEEEEeecceEEEEEe--ec---eEEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence 44444333333 343 455677889999999999987643 24 46899999999999999887664433 4443
No 85
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=91.92 E-value=0.52 Score=35.82 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=42.9
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405 101 FRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176 (240)
Q Consensus 101 ~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~ 176 (240)
..++++||+.......+..+-++||++|++.+. +. ...+.+|+++++..|..-.+.+.+ +.+.++.+-
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence 467889988643222234468999999997653 32 147899999999977665666543 677766433
No 86
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=91.91 E-value=0.3 Score=36.81 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=21.3
Q ss_pred eEEEEEECCCCEEEeCCCCeEEEEecCCC
Q 045405 140 TFFSKVLTPGKVFLIPRALVHFQLNVGNE 168 (240)
Q Consensus 140 ~~~~~~l~~GDv~v~P~G~~H~~~N~G~~ 168 (240)
+.+..+-++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 34567889999999999999999999864
No 87
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=91.30 E-value=0.35 Score=41.90 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=45.4
Q ss_pred CCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405 107 VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN 164 (240)
Q Consensus 107 pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N 164 (240)
|+.-.--|..+. +|++|-.+|...+-+++. |+.....+++||++.+|+.++|.-+-
T Consensus 42 PN~RkdyHieeg-eE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 42 PNTRKDYHIEEG-EEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred CCcccccccCCc-chhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhh
Confidence 333344577764 999999999999999976 66668899999999999999997543
No 88
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=90.06 E-value=2 Score=36.71 Aligned_cols=65 Identities=26% Similarity=0.329 Sum_probs=43.2
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEee-CEEEEEEEccC----------------CeEE------EEEECCCCEEEeCCCC
Q 045405 102 RIDLDVGGINPPHTHPRGTEAGIVTR-GTVLVGLVTTN----------------NTFF------SKVLTPGKVFLIPRAL 158 (240)
Q Consensus 102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~----------------g~~~------~~~l~~GDv~v~P~G~ 158 (240)
.+.+.||++.|.|.|++-.|=++=-. |++++.....+ |+.. ...|++|+.+.+|+|.
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~ 169 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL 169 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence 56778999999999986655443222 23333332211 1111 3589999999999999
Q ss_pred eEEEEecC
Q 045405 159 VHFQLNVG 166 (240)
Q Consensus 159 ~H~~~N~G 166 (240)
.|++..-+
T Consensus 170 ~HsFwae~ 177 (225)
T COG3822 170 YHSFWAEE 177 (225)
T ss_pred eeeeeecC
Confidence 99988743
No 89
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=89.65 E-value=2.1 Score=40.41 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=42.4
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL 163 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~ 163 (240)
.+.+.++++..+... ......++++|++|++++.. ++. +..+++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~~---~~~~~~~Illv~~G~~~i~~---~~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPTT---LSQQSAAILFCVEGEAVLWK---GEQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceEE---ecCCCcEEEEEEcceEEEEe---CCe--EEEECCCCEEEEeCCCccEEE
Confidence 466777777654222 22245799999999998853 344 468999999999998876655
No 90
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=89.26 E-value=0.78 Score=42.81 Aligned_cols=61 Identities=25% Similarity=0.307 Sum_probs=42.2
Q ss_pred EEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC--eE---------------EEEEECCCCEEEeCCCCeEEEEec
Q 045405 104 DLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN--TF---------------FSKVLTPGKVFLIPRALVHFQLNV 165 (240)
Q Consensus 104 ~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g--~~---------------~~~~l~~GDv~v~P~G~~H~~~N~ 165 (240)
...+||.+.+||-+. +-+++=..|+=|..+....+ +. ...++.+||+.++|+|+.|+-...
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 678899999999865 55444444544555432211 10 136899999999999999998765
No 91
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=88.62 E-value=6.5 Score=31.10 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=41.0
Q ss_pred eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
+.+.++.....-.+...-+.+.--+.+.++|+..+.. +++ ...+.+||+++++.+.++.+...++
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQ---GGR--EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEE---CCE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 4555555553332211112233445567778887765 355 6799999999999999988765543
No 92
>PRK10579 hypothetical protein; Provisional
Probab=88.57 E-value=7.5 Score=29.45 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=39.3
Q ss_pred ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405 114 HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV 165 (240)
Q Consensus 114 H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~ 165 (240)
+.-..+.|+.-|++|++++.+- |...++.+++|+.|-+|++...-++..
T Consensus 36 ~F~T~~~E~MeivsG~l~V~Lp---g~~ew~~~~aG~sF~VpanssF~l~v~ 84 (94)
T PRK10579 36 TFSTAEPEEMTVISGALNVLLP---GATDWQVYEAGEVFNVPGHSEFHLQVA 84 (94)
T ss_pred EEcCCCcEEEEEEeeEEEEECC---CCcccEEeCCCCEEEECCCCeEEEEEC
Confidence 3445579999999999999884 433478999999999999988776653
No 93
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=88.49 E-value=3.9 Score=31.00 Aligned_cols=63 Identities=17% Similarity=0.098 Sum_probs=40.3
Q ss_pred EEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405 104 DLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP 174 (240)
Q Consensus 104 ~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~ 174 (240)
.+.||- -+....+.|+.-|++|++.+.+- |...++.+++|+.|.+|++.-.-++.. ++...++
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lp---g~~ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C 91 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLP---GEDEWQTYSAGESFEVPANSSFDVKVK--EPTAYLC 91 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEET---T-SS-EEEETT-EEEE-TTEEEEEEES--S-EEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcC---CCcccEEeCCCCeEEECCCCeEEEEEC--cceeeEE
Confidence 345554 23444578999999999999984 333378999999999999988777653 3444444
No 94
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=88.39 E-value=2.1 Score=29.79 Aligned_cols=57 Identities=14% Similarity=0.012 Sum_probs=41.9
Q ss_pred EEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405 103 IDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN 164 (240)
Q Consensus 103 v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N 164 (240)
..|.||.....+-. +...+-|.+|++-++.. |....+.|++||.+.+++|..-++..
T Consensus 2 ~~L~~g~~~~lr~~--~~~~l~v~~G~vWlT~~---g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAA--AGQRLRVESGRVWLTRE---GDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcC--CCcEEEEccccEEEECC---CCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 35667776655533 45559999999988763 44447899999999999998766654
No 95
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=87.70 E-value=5.2 Score=36.08 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=51.6
Q ss_pred ceEEEEEEEcCCc-c--cCCccCCCCCeEEEEee---CEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCE
Q 045405 97 GVALFRIDLDVGG-I--NPPHTHPRGTEAGIVTR---GTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPA 170 (240)
Q Consensus 97 gls~~~v~l~pGg-~--~~pH~Hp~a~Ei~yVl~---G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a 170 (240)
.+-+....+.||+ . .|||.|++..|..|-.+ +.-..++..+-++.....++-+|+++.|+=.+|.-. |...-
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~y 251 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSNY 251 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Ccccc
Confidence 5777777889999 3 69999997777554221 211112111112222478999999999999999853 55555
Q ss_pred EEEEEEeCCC
Q 045405 171 TFIPIFNTQN 180 (240)
Q Consensus 171 ~~i~~~~s~~ 180 (240)
.||...--+|
T Consensus 252 ~fiw~m~gen 261 (276)
T PRK00924 252 TFIWGMAGEN 261 (276)
T ss_pred EEEEEecccC
Confidence 5665554444
No 96
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=87.60 E-value=4.8 Score=36.40 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=42.8
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL 163 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~ 163 (240)
.+++.++++...... ..+ +...+++|++|++++.. ++. +..+++|+.+++|++...+..
T Consensus 234 ~F~~~~~~~~~~~~~--~~~-~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAEF--IQQ-QSALILSVLEGSGRIKS---GGK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCceee--ccC-CCcEEEEEEcceEEEEE---CCE--EEEEecccEEEEccCCccEEE
Confidence 577788887654211 123 46789999999998864 244 578999999999999866654
No 97
>PLN02288 mannose-6-phosphate isomerase
Probab=86.99 E-value=2.1 Score=40.45 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=40.8
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCC
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRAL 158 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~ 158 (240)
.+++.++++.+|.......+ +..++++|++|++++.. . +......+++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~--~-~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST--G-SSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec--C-CccceEEEeceeEEEEeCCC
Confidence 57888888888753222213 45899999999998853 2 22113569999999999874
No 98
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=85.99 E-value=6.2 Score=29.04 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=41.9
Q ss_pred CcccCCccC-CCCCeEEEEeeCEEEEEEEccCCe--EEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 108 GGINPPHTH-PRGTEAGIVTRGTVLVGLVTTNNT--FFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 108 Gg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~g~--~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
-++...|.- .+.-..+-|++|++.+...+++|. .....+++|+..++++...|.+.-.++
T Consensus 13 ~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 13 AALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 344555543 222345689999999999987652 125678999999999999999988765
No 99
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=85.71 E-value=4.2 Score=38.09 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=53.0
Q ss_pred CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405 90 FPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP 169 (240)
Q Consensus 90 ~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~ 169 (240)
.|... .+.+.+++++.|.....-.- +..-++.|++|++++.-.. +. ...+++|||++||+...-.+.. .+++
T Consensus 327 ~Ppi~--eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~~~-~sd~ 398 (411)
T KOG2757|consen 327 DPPIE--EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHLSS-SSDP 398 (411)
T ss_pred CCCCc--ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCceeec-cCcc
Confidence 45555 67888999999775333333 4589999999999887532 33 5789999999999998654433 3444
Q ss_pred EEEE
Q 045405 170 ATFI 173 (240)
Q Consensus 170 a~~i 173 (240)
...+
T Consensus 399 ~~~y 402 (411)
T KOG2757|consen 399 FLGY 402 (411)
T ss_pred eeee
Confidence 4443
No 100
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=85.52 E-value=2.9 Score=29.23 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=33.9
Q ss_pred EEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEE
Q 045405 103 IDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVF 152 (240)
Q Consensus 103 v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~ 152 (240)
.++++|..+ ...- ....+++|++|.+.+...+.+++. ....+.+||++
T Consensus 2 ~~~~~g~~i~~~g~--~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 2 KTYKKGEVIYRQGD--PCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EEESTTEEEEETTS--BESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred eEECCCCEEEeCCC--cCCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 355666643 3332 358999999999999998887763 25677788776
No 101
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=84.41 E-value=20 Score=28.93 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=55.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeC-EEEEEEEccCCeEEEEEE----CCC--CEEEeCCCCeEEEEecCCCC
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRG-TVLVGLVTTNNTFFSKVL----TPG--KVFLIPRALVHFQLNVGNEP 169 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G-~~~v~~v~~~g~~~~~~l----~~G--Dv~v~P~G~~H~~~N~G~~~ 169 (240)
..+....-|.++.....|-- +++|+.+...| .+++.+++++|+....+| .+| =.++||+|......-.+...
T Consensus 40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~ 118 (139)
T PF06172_consen 40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGD 118 (139)
T ss_dssp S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSS
T ss_pred cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCC
Confidence 35666666888777755544 78999999998 688999999887666566 344 35789999877765445555
Q ss_pred EEEEEEEeCCCCCc
Q 045405 170 ATFIPIFNTQNPGV 183 (240)
Q Consensus 170 a~~i~~~~s~~Pg~ 183 (240)
..+++.. -.||+
T Consensus 119 y~Lvsc~--VaPGF 130 (139)
T PF06172_consen 119 YSLVSCT--VAPGF 130 (139)
T ss_dssp EEEEEEE--ESSC-
T ss_pred EEEEEEE--EcCCC
Confidence 5555433 34554
No 102
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=82.59 E-value=5.4 Score=32.91 Aligned_cols=126 Identities=11% Similarity=0.058 Sum_probs=74.7
Q ss_pred EEEEcCCcccCCccCC-CCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCC----CCeEEEEecCCCCEEEEEE
Q 045405 102 RIDLDVGGINPPHTHP-RGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPR----ALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 102 ~v~l~pGg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~----G~~H~~~N~G~~~a~~i~~ 175 (240)
...+++|..+-----+ ....+++|++|.+++...+++|+. ....+.+||++=.+. ...+.... .+++.++.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A--~~~~~v~~i 85 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEA--VTDSRIDVL 85 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEE--cCceEEEEE
Confidence 4567777654221111 246899999999999999888864 345669999875431 11122222 234444332
Q ss_pred EeCC--CCCc----------------------------eeccchhh------c----C----CCCCCHHHHHhhcCCCHH
Q 045405 176 FNTQ--NPGV----------------------------SDSIGTLF------D----T----TPPVPNEVLTKSFRVGDD 211 (240)
Q Consensus 176 ~~s~--~Pg~----------------------------~~~~~~lf------~----s----~~~~p~~vla~af~v~~~ 211 (240)
+.+ +|.. ..++..+. + . ...++.+-+|...|++.+
T Consensus 86 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~~~~~t~~~iA~~lG~tre 164 (202)
T PRK13918 86 -NPALMSAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALLELSDTPLATQEDSGETMIYATHDELAAAVGSVRE 164 (202)
T ss_pred -EHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCCCCCeEEecCCHHHHHHHhCccHH
Confidence 211 1210 00111110 0 0 014789999999999999
Q ss_pred HHHHHHhhcCCCceEEecC
Q 045405 212 VINTIRAARAQSSWINILD 230 (240)
Q Consensus 212 ~v~~l~~~~~~~~~i~~~~ 230 (240)
++.++.+.+...+.|...+
T Consensus 165 tvsR~l~~l~~~g~I~~~~ 183 (202)
T PRK13918 165 TVTKVIGELSREGYIRSGY 183 (202)
T ss_pred HHHHHHHHHHHCCCEEcCC
Confidence 9999999888888887543
No 103
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=82.37 E-value=15 Score=31.13 Aligned_cols=126 Identities=9% Similarity=0.046 Sum_probs=75.2
Q ss_pred EEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCC----CCeEEEEecCCCCEEEEEEEe
Q 045405 103 IDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPR----ALVHFQLNVGNEPATFIPIFN 177 (240)
Q Consensus 103 v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~----G~~H~~~N~G~~~a~~i~~~~ 177 (240)
..+++|..+-. --.....+++|++|.+++...+++|+. ....+.+||++-.+. ...+..... ++.+++. +.
T Consensus 40 ~~~~kge~l~~-~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~~~~~a~--~~~~i~~-ip 115 (235)
T PRK11161 40 KPIQKGQTLFK-AGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHPSFAQAL--ETSMVCE-IP 115 (235)
T ss_pred eeecCCCEeEC-CCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCcceEEEe--ccEEEEE-EE
Confidence 35666664322 223457899999999999998887754 334558999985432 111222222 3333332 22
Q ss_pred C--------CCCCce----------------------------eccchh------hcC--------CCCCCHHHHHhhcC
Q 045405 178 T--------QNPGVS----------------------------DSIGTL------FDT--------TPPVPNEVLTKSFR 207 (240)
Q Consensus 178 s--------~~Pg~~----------------------------~~~~~l------f~s--------~~~~p~~vla~af~ 207 (240)
. .+|.+- .+...+ ++. ...++.+-+|...|
T Consensus 116 ~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG 195 (235)
T PRK11161 116 FETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLG 195 (235)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhC
Confidence 1 233210 011111 110 01478899999999
Q ss_pred CCHHHHHHHHhhcCCCceEEecCCe
Q 045405 208 VGDDVINTIRAARAQSSWINILDGR 232 (240)
Q Consensus 208 v~~~~v~~l~~~~~~~~~i~~~~~~ 232 (240)
++.+.+.++.+++...+.|...+++
T Consensus 196 ~sr~tvsR~l~~l~~~g~I~~~~~~ 220 (235)
T PRK11161 196 LTVETISRLLGRFQKSGMLAVKGKY 220 (235)
T ss_pred CcHHHHHHHHHHHHHCCCEEecCCE
Confidence 9999999999998888888877753
No 104
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=82.21 E-value=25 Score=31.37 Aligned_cols=96 Identities=22% Similarity=0.221 Sum_probs=49.7
Q ss_pred ceEEEecccCCCCCCccceEEEEEEEcCCc---ccCCccCCCC--------CeEEEEe-e---CEEEEEEEccCC-eEEE
Q 045405 80 RAVTFGDVFGFPAVNTQGVALFRIDLDVGG---INPPHTHPRG--------TEAGIVT-R---GTVLVGLVTTNN-TFFS 143 (240)
Q Consensus 80 ~~v~~~~~~~~P~l~~~gls~~~v~l~pGg---~~~pH~Hp~a--------~Ei~yVl-~---G~~~v~~v~~~g-~~~~ 143 (240)
..+......+.+.-. .|-+..+. .|+| ..|||.|++. +|+.|-. + |-+.-.+.+.+. ....
T Consensus 135 R~V~~~i~~~~~~~~--~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~ 211 (261)
T PF04962_consen 135 RTVRNIIDPNVPPAS--RLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH 211 (261)
T ss_dssp EEEEEEESTTT---S--S-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE
T ss_pred EEEEEeeCCCCcccc--eEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE
Confidence 455555555554222 46666666 6655 3699999763 4555442 2 434322332222 1236
Q ss_pred EEECCCCEEEeCCCCeEEEEe-cCCCCEEEEEEEeCCC
Q 045405 144 KVLTPGKVFLIPRALVHFQLN-VGNEPATFIPIFNTQN 180 (240)
Q Consensus 144 ~~l~~GDv~v~P~G~~H~~~N-~G~~~a~~i~~~~s~~ 180 (240)
..++-||++.+|+|. |-+.. .| ....++-++-..+
T Consensus 212 ~~V~~~d~V~iP~gy-Hp~~aapG-y~~Yylw~maG~~ 247 (261)
T PF04962_consen 212 YVVRNGDAVLIPSGY-HPVVAAPG-YDMYYLWVMAGEN 247 (261)
T ss_dssp EEEETTEEEEESTTB--SEEEEEE-SSEEEEEEEESSS
T ss_pred EEEECCCEEEeCCCC-CCcCcCCC-cCcEEEEEEEcCC
Confidence 789999999999993 33322 33 3445666665555
No 105
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=76.42 E-value=22 Score=32.61 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=43.1
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL 163 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~ 163 (240)
.+++.++++..-... .+ .+...+++|++|++++.. +++ +..+++|+.+++|+...-+..
T Consensus 241 ~F~l~~~~i~~~~~~-~~--~~~~~il~v~eG~~~l~~---~~~--~~~l~~G~s~~ipa~~~~~~i 299 (312)
T COG1482 241 DFALYKWDISGTAEF-IK--QESFSILLVLEGEGTLIG---GGQ--TLKLKKGESFFIPANDGPYTI 299 (312)
T ss_pred ceEEEEEeccChhhh-cc--CCCcEEEEEEcCeEEEec---CCE--EEEEcCCcEEEEEcCCCcEEE
Confidence 577788877752211 11 236899999999999875 245 689999999999999665554
No 106
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=75.54 E-value=17 Score=25.92 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=37.4
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EEEEEECCCCEEEeC
Q 045405 101 FRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FFSKVLTPGKVFLIP 155 (240)
Q Consensus 101 ~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~~~~l~~GDv~v~P 155 (240)
....+++|..+ .+-....+.+.+|++|.+.+...+.+|+ .....+.+||++-..
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 34667777754 2333445789999999999888765553 345677899877443
No 107
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=75.39 E-value=29 Score=30.90 Aligned_cols=82 Identities=13% Similarity=0.007 Sum_probs=49.8
Q ss_pred EEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCC--------CEEE
Q 045405 82 VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPG--------KVFL 153 (240)
Q Consensus 82 v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~G--------Dv~v 153 (240)
++.++.... +.. -+.+..++|++|.....-.- +.+-.++.++|++++.+ +|+. ...+..- |+++
T Consensus 14 ~~~i~~~~~-g~~--~~~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~---~g~~-~~~l~~R~~vF~~~~d~lY 85 (261)
T PF04962_consen 14 VYSITPENA-GWM--YMGFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTV---DGEE-FYELGGRESVFDGPPDALY 85 (261)
T ss_dssp EEECTCCCC-CCC--CBECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEE---TTEE-EEEE-TTSSGGGS--EEEE
T ss_pred EEEECCCcc-Ccc--ccceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEe---CCce-EEEecccccccCCCCcEEE
Confidence 444444333 333 34556789999987655433 43455678899999987 3422 4566666 9999
Q ss_pred eCCCCeEEEEecCCCCEEEE
Q 045405 154 IPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 154 ~P~G~~H~~~N~G~~~a~~i 173 (240)
+|+|..-.+.+.++ +++.
T Consensus 86 vp~g~~~~i~a~~~--ae~~ 103 (261)
T PF04962_consen 86 VPRGTKVVIFASTD--AEFA 103 (261)
T ss_dssp E-TT--EEEEESST--EEEE
T ss_pred eCCCCeEEEEEcCC--CEEE
Confidence 99999977777443 5554
No 108
>PLN02868 acyl-CoA thioesterase family protein
Probab=73.63 E-value=12 Score=35.12 Aligned_cols=53 Identities=11% Similarity=-0.036 Sum_probs=39.5
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEe
Q 045405 101 FRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLI 154 (240)
Q Consensus 101 ~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~ 154 (240)
....+++|..+-. --.....+++|++|++++...+++|+.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~-~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVR-EGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEe-CCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 3467777776422 2234578999999999998887777655678899999874
No 109
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=73.53 E-value=16 Score=25.99 Aligned_cols=52 Identities=19% Similarity=0.168 Sum_probs=35.6
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EEEEEECCCCEEE
Q 045405 101 FRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FFSKVLTPGKVFL 153 (240)
Q Consensus 101 ~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~~~~l~~GDv~v 153 (240)
....+++|..+-.. ......+.++++|.+.+...+++|+ .....+.+|+++-
T Consensus 18 ~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g 70 (115)
T cd00038 18 EERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFG 70 (115)
T ss_pred eeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcC
Confidence 45567777754222 2234789999999999988877663 3456778888763
No 110
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.59 E-value=13 Score=27.70 Aligned_cols=44 Identities=25% Similarity=0.167 Sum_probs=35.1
Q ss_pred CCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405 117 PRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL 163 (240)
Q Consensus 117 p~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~ 163 (240)
..+.|+..|+.|.+.+.+. |...+++..+|++|.+|.....-++
T Consensus 39 Ta~~E~Mtvv~Gal~v~lp---gs~dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 39 TAAPEEMTVVSGALTVLLP---GSDDWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred cCCceEEEEEeeEEEEEcC---CCcccEEecCCceEEcCCCCeEEEE
Confidence 3578999999999998875 3334789999999999998765443
No 111
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=72.40 E-value=35 Score=30.82 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=36.3
Q ss_pred CCe-EEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec--CCCCEEEE
Q 045405 119 GTE-AGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV--GNEPATFI 173 (240)
Q Consensus 119 a~E-i~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~--G~~~a~~i 173 (240)
..| .++.+.|++.+.+ +|+ ++.+.+.|.+++|+|..-..... ...++++.
T Consensus 73 rrE~giV~lgG~~~V~v---dG~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~ 125 (276)
T PRK00924 73 RRELGIINIGGAGTVTV---DGE--TYELGHRDALYVGKGAKEVVFASADAANPAKFY 125 (276)
T ss_pred CcEEEEEEccceEEEEE---CCE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEE
Confidence 355 5677889999986 366 45699999999999987666542 24566665
No 112
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=70.47 E-value=15 Score=31.21 Aligned_cols=127 Identities=6% Similarity=-0.108 Sum_probs=76.2
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCC---C--CeEEEEecCCCCEEEEEE
Q 045405 102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPR---A--LVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~---G--~~H~~~N~G~~~a~~i~~ 175 (240)
...+++|..+-. -......+.+|++|.+++...+.+|+. ....+.+||++-... + ..+.... .+++.++.+
T Consensus 33 ~~~~~kge~l~~-~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A--~~~~~i~~i 109 (226)
T PRK10402 33 LFHFLAREYIVQ-EGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQA--IEECWCLAL 109 (226)
T ss_pred heeeCCCCEEEc-CCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEE--eccEEEEEE
Confidence 446677765422 223357899999999999999888853 345678999886432 1 1112222 233443322
Q ss_pred Ee-------CCCCCcee----------------------------ccchhhc----CCCCCCHHHHHhhcCCCHHHHHHH
Q 045405 176 FN-------TQNPGVSD----------------------------SIGTLFD----TTPPVPNEVLTKSFRVGDDVINTI 216 (240)
Q Consensus 176 ~~-------s~~Pg~~~----------------------------~~~~lf~----s~~~~p~~vla~af~v~~~~v~~l 216 (240)
-. ..+|.+.. ++..+.. ....++.+-+|..+|++.+++.++
T Consensus 110 ~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~L~~~~~~~~~~~t~~~lA~~lG~sretvsR~ 189 (226)
T PRK10402 110 PMKDCRPLLLNDALFLRKLCKFLSHKNYRNIVSLTQNQSFPLENRLAAFILLTQEGDLYHEKHTQAAEYLGVSYRHLLYV 189 (226)
T ss_pred EHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCcccchHHHHHHHHCCcHHHHHHH
Confidence 11 12442110 1111111 001257789999999999999999
Q ss_pred HhhcCCCceEEecCC
Q 045405 217 RAARAQSSWINILDG 231 (240)
Q Consensus 217 ~~~~~~~~~i~~~~~ 231 (240)
.+.+...+.|....+
T Consensus 190 L~~L~~~G~I~~~~~ 204 (226)
T PRK10402 190 LAQFIQDGYLKKSKR 204 (226)
T ss_pred HHHHHHCCCEEeeCC
Confidence 888888888877643
No 113
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=68.02 E-value=38 Score=28.14 Aligned_cols=76 Identities=22% Similarity=0.185 Sum_probs=52.8
Q ss_pred ceEEEEEEEc--CCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-----eEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405 97 GVALFRIDLD--VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-----TFFSKVLTPGKVFLIPRALVHFQLNVGNEP 169 (240)
Q Consensus 97 gls~~~v~l~--pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-----~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~ 169 (240)
++++.|..-. |=.+...-.||..+|.++-+.|+-.+-++.+.+ +......+.|+-+..-+|..|...-.=+.+
T Consensus 55 ~isifr~~~~~~p~~~~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~ 134 (162)
T PRK03606 55 LISIFRAQPRALPLEIRMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEV 134 (162)
T ss_pred EEEEEeCcccCCCcceeeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCC
Confidence 5566555422 222334456888899999999998888887643 455788999999999999999754332334
Q ss_pred EEE
Q 045405 170 ATF 172 (240)
Q Consensus 170 a~~ 172 (240)
..+
T Consensus 135 ~dF 137 (162)
T PRK03606 135 SDF 137 (162)
T ss_pred ceE
Confidence 444
No 114
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=66.66 E-value=24 Score=31.92 Aligned_cols=46 Identities=4% Similarity=-0.016 Sum_probs=37.6
Q ss_pred CeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405 120 TEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP 169 (240)
Q Consensus 120 ~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~ 169 (240)
.-++++.+|...+.- ++|. +..+.++.++++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~--~~g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITT--SSGE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEe--CCCc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 678999999998875 3344 468999999999999999998876444
No 115
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=63.78 E-value=27 Score=27.95 Aligned_cols=65 Identities=14% Similarity=0.317 Sum_probs=45.7
Q ss_pred CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEe----eCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405 91 PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVT----RGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN 164 (240)
Q Consensus 91 P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl----~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N 164 (240)
|+++ ++.+.++.|++|...--- +..|+...+ .|++.+.+-++.|. .+++||++-+-.|+.-.+++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~~----~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEGC----LIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcCc----ccCCccEEEecccchhhhcC
Confidence 5666 677888888888754322 335665554 46777777665454 67999999999999877765
No 116
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=63.23 E-value=18 Score=33.54 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=24.5
Q ss_pred EEEEECCCCEEEeCCCCeEEEEecCCCCEE
Q 045405 142 FSKVLTPGKVFLIPRALVHFQLNVGNEPAT 171 (240)
Q Consensus 142 ~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~ 171 (240)
.+...++|+++++|.|..|.+.|...+-|+
T Consensus 263 IEc~q~pGEt~fVP~GWWHvVlNle~TIAi 292 (407)
T KOG2130|consen 263 IECLQKPGETMFVPSGWWHVVLNLEPTIAI 292 (407)
T ss_pred ceeeecCCceEEecCCeEEEEeccCceeee
Confidence 456789999999999999999997654333
No 117
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=63.01 E-value=9.7 Score=30.05 Aligned_cols=37 Identities=8% Similarity=0.237 Sum_probs=26.3
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhcCCCceEEecCCe
Q 045405 196 PVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGR 232 (240)
Q Consensus 196 ~~p~~vla~af~v~~~~v~~l~~~~~~~~~i~~~~~~ 232 (240)
||++..+|+.+++++++|+++++..+-.+..+-.|.-
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~i~p~yk~VDTc 108 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHGIVPVYKMVDTC 108 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT---EEEE--SB
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcCCceeeeeecCc
Confidence 7999999999999999999999998888888877753
No 118
>PHA02984 hypothetical protein; Provisional
Probab=61.67 E-value=55 Score=29.50 Aligned_cols=50 Identities=6% Similarity=0.099 Sum_probs=38.3
Q ss_pred EEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405 122 AGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 122 i~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (240)
++.+++|+.++..... ++..+..+++||.|.+--+.-|.... .+..+.++
T Consensus 96 FvlCl~G~~~I~~~~~-~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~ 145 (286)
T PHA02984 96 FVLCLNGKTSIECFNK-GSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLA 145 (286)
T ss_pred EEEEcCCeEEEEEecC-CceeeeEEecCceEEEEccceEEEEe-CCCceEEE
Confidence 4457899999988653 55568899999999999999999865 34444443
No 119
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=61.37 E-value=44 Score=27.58 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=44.9
Q ss_pred ceEEEEEEEcCCc--ccCCccCCCCCeEEEEeeCEE-EEEEEccCC------eEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 97 GVALFRIDLDVGG--INPPHTHPRGTEAGIVTRGTV-LVGLVTTNN------TFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 97 gls~~~v~l~pGg--~~~pH~Hp~a~Ei~yVl~G~~-~v~~v~~~g------~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
++++.+..-.+.- +...=.|+..+|.++-+.|+. .+-++.+++ ++....+..|+-+.+-+|+.|...-.=+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 4566665433322 233455777899999999988 665665443 4567899999999999999998544334
Q ss_pred CCEEEEEE
Q 045405 168 EPATFIPI 175 (240)
Q Consensus 168 ~~a~~i~~ 175 (240)
++..++.+
T Consensus 136 ~~~~f~vv 143 (165)
T PF04115_consen 136 EPADFLVV 143 (165)
T ss_dssp SEEEEEEE
T ss_pred CcceEEEE
Confidence 56666555
No 120
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=60.65 E-value=31 Score=30.02 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=56.7
Q ss_pred cccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCc--eec
Q 045405 109 GINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV--SDS 186 (240)
Q Consensus 109 g~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~--~~~ 186 (240)
|....|| ++-..+|++|+..... .|+....+.++||....|+|......-. +...++.--..--|.. +.+
T Consensus 112 GhsGrh~---ad~y~tIL~G~~~~~~---~g~~~~evy~pGd~~~l~rg~a~~y~m~--~~tw~LEY~RG~IP~~lpf~~ 183 (216)
T PF04622_consen 112 GHSGRHW---ADDYFTILSGEQWAWS---PGSLEPEVYKPGDSHHLPRGEAKQYQMP--PGTWALEYGRGWIPSMLPFGF 183 (216)
T ss_pred CCCcceE---eeeEEEEEEEEEEEEc---CCCCCceEeccCCEEEecCceEEEEEeC--CCeEEEEecCCchhhhhHHHH
Confidence 4455676 4678899999987654 3555577899999999999998766543 2333333222222322 223
Q ss_pred cchhhcCCCCCCHHHHHhhcCCCHH
Q 045405 187 IGTLFDTTPPVPNEVLTKSFRVGDD 211 (240)
Q Consensus 187 ~~~lf~s~~~~p~~vla~af~v~~~ 211 (240)
++.+|+ .++-..+-++..+...
T Consensus 184 ~dt~~s---TlDf~t~~~T~~~~~~ 205 (216)
T PF04622_consen 184 ADTLFS---TLDFPTLYRTVYITAR 205 (216)
T ss_pred HHHHHh---ccchHHHHHHHHHHHH
Confidence 456666 3666666665555443
No 121
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=60.13 E-value=5.2 Score=36.15 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=17.8
Q ss_pred EEEECCCCEEEeCCCCeEE
Q 045405 143 SKVLTPGKVFLIPRALVHF 161 (240)
Q Consensus 143 ~~~l~~GDv~v~P~G~~H~ 161 (240)
...+++||++++|+|.+|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 4689999999999999998
No 122
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=60.01 E-value=22 Score=28.92 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=69.3
Q ss_pred CCCeEEEEeeCEEEEEEEccCCeEE-EEEECCCCEEEeC----CCCe---EEEEecCCCCEEEEEEEe-------CCCCC
Q 045405 118 RGTEAGIVTRGTVLVGLVTTNNTFF-SKVLTPGKVFLIP----RALV---HFQLNVGNEPATFIPIFN-------TQNPG 182 (240)
Q Consensus 118 ~a~Ei~yVl~G~~~v~~v~~~g~~~-~~~l~~GDv~v~P----~G~~---H~~~N~G~~~a~~i~~~~-------s~~Pg 182 (240)
..+.+.+|++|.+++...+++|+.. -..+.+||++=.. .... +.... -++..++.+-. ..+|.
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A--~~~~~v~~i~~~~~~~l~~~~p~ 87 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVA--FTRVELLAVPIEQVEKAIEEDPD 87 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEE--ecceEEEEeeHHHHHHHHHHChH
Confidence 3467899999999999988887543 4678999987432 1111 11122 23344332211 13442
Q ss_pred cee----------------------------ccchh------hc---C-----CCCCCHHHHHhhcCCCHHHHHHHHhhc
Q 045405 183 VSD----------------------------SIGTL------FD---T-----TPPVPNEVLTKSFRVGDDVINTIRAAR 220 (240)
Q Consensus 183 ~~~----------------------------~~~~l------f~---s-----~~~~p~~vla~af~v~~~~v~~l~~~~ 220 (240)
... ++..+ ++ . .-.++.+-+|...|++.+++.++.+++
T Consensus 88 l~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~~t~~~iA~~lG~tretvsR~l~~l 167 (193)
T TIGR03697 88 LSMLLLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPGQRGVTIDLRLSHQAIAEAIGSTRVTITRLLGDL 167 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCeEEecCCCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 110 01111 10 0 014789999999999999999999988
Q ss_pred CCCceEEecCCe
Q 045405 221 AQSSWINILDGR 232 (240)
Q Consensus 221 ~~~~~i~~~~~~ 232 (240)
...+.|...+++
T Consensus 168 ~~~g~I~~~~~~ 179 (193)
T TIGR03697 168 RKKKLISIHKKK 179 (193)
T ss_pred HHCCCEEecCCE
Confidence 888888877643
No 123
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=58.01 E-value=16 Score=29.53 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHhhcCCCceEEecCCeee
Q 045405 195 PPVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRSI 234 (240)
Q Consensus 195 ~~~p~~vla~af~v~~~~v~~l~~~~~~~~~i~~~~~~~~ 234 (240)
|.++++-+|++|++++|.+++|++. ....+.-++...+
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~--~~lTvh~D~~G~i 125 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS--HRMSVHFTSQGQI 125 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC--CeEEEEEcCCCCc
Confidence 3789999999999999999999875 2445555554433
No 124
>PF13994 PgaD: PgaD-like protein
Probab=57.73 E-value=18 Score=28.95 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=28.8
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhcCCCceEEecCCeee
Q 045405 196 PVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRSI 234 (240)
Q Consensus 196 ~~p~~vla~af~v~~~~v~~l~~~~~~~~~i~~~~~~~~ 234 (240)
.++++-+|+.|++++++++++++. ....+.-+|..+|
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~--k~~~V~~d~~G~I 136 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA--KVLTVHHDDHGRI 136 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC--CeEEEEeCCCCCc
Confidence 389999999999999999999876 3446666665443
No 125
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=57.32 E-value=9.6 Score=35.00 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.5
Q ss_pred EEEECCCCEEEeCCCCeEEEEe
Q 045405 143 SKVLTPGKVFLIPRALVHFQLN 164 (240)
Q Consensus 143 ~~~l~~GDv~v~P~G~~H~~~N 164 (240)
...+++||.+++|+|.+|....
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred EEecCCCCEEEecCCCceeecc
Confidence 5789999999999999998743
No 126
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=56.87 E-value=40 Score=27.18 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=81.0
Q ss_pred EEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCCCC-----eEEEEecCCCCEEEE
Q 045405 100 LFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPRAL-----VHFQLNVGNEPATFI 173 (240)
Q Consensus 100 ~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~G~-----~H~~~N~G~~~a~~i 173 (240)
.....+++|...-..-- .+.-+.+|++|.+.+...+++|+. ....+.+||++-...-. .+..... ++..++
T Consensus 23 ~~~~~~~~g~~l~~~g~-~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~--~~~~~~ 99 (214)
T COG0664 23 LEVRKLPKGEVLFTEGE-EADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVAL--TDVEVL 99 (214)
T ss_pred ceeEeeCCCCEEEcCCC-cCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEc--ceEEEE
Confidence 34556666654433323 335689999999999999888753 34568999999666433 2222332 334444
Q ss_pred EEE--------eCCCCCceec----------------------------c------chhhcC--------CCCCCHHHHH
Q 045405 174 PIF--------NTQNPGVSDS----------------------------I------GTLFDT--------TPPVPNEVLT 203 (240)
Q Consensus 174 ~~~--------~s~~Pg~~~~----------------------------~------~~lf~s--------~~~~p~~vla 203 (240)
.+- .. +|..... . ...++. ...++.+.++
T Consensus 100 ~~~~~~~~~~~~~-~p~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia 178 (214)
T COG0664 100 EIPRKDFLELLAE-SPKLALALLRLLARRLRQALERLSLLARKDVEERLARFLLNLGRRLGIATEDGILIPLPLTHKDLA 178 (214)
T ss_pred EecHHHHHHHHhh-CcHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCCCcEEeccCCHHHHH
Confidence 331 23 4532110 0 011110 0158889999
Q ss_pred hhcCCCHHHHHHHHhhcCCCceEEecCCeee
Q 045405 204 KSFRVGDDVINTIRAARAQSSWINILDGRSI 234 (240)
Q Consensus 204 ~af~v~~~~v~~l~~~~~~~~~i~~~~~~~~ 234 (240)
...|+..+.+.++...+...+.|...++..+
T Consensus 179 ~~~g~~~~~vsr~l~~l~~~g~i~~~~~~~~ 209 (214)
T COG0664 179 EYLGLSRETVSRILKELRKDGLISVRGKKII 209 (214)
T ss_pred HHhCCchhhHHHHHHHHHhCCcEeeCCceEE
Confidence 9999999999999999988888887775543
No 127
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=56.08 E-value=20 Score=29.59 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=23.4
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHhhc
Q 045405 195 PPVPNEVLTKSFRVGDDVINTIRAAR 220 (240)
Q Consensus 195 ~~~p~~vla~af~v~~~~v~~l~~~~ 220 (240)
|.++++-+|+.|+++++.++++++..
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~k 122 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSGS 122 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhCC
Confidence 37899999999999999999998864
No 128
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=54.34 E-value=14 Score=34.96 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEECCCCEEEeCCCCeEEEEe
Q 045405 143 SKVLTPGKVFLIPRALVHFQLN 164 (240)
Q Consensus 143 ~~~l~~GDv~v~P~G~~H~~~N 164 (240)
...|++||++++|+|.+|....
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcC
Confidence 5789999999999999999743
No 129
>COG1741 Pirin-related protein [General function prediction only]
Probab=52.77 E-value=1.8e+02 Score=26.28 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEE
Q 045405 89 GFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVG 133 (240)
Q Consensus 89 ~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~ 133 (240)
..|.-+.. +-...+.+++|+..+.+ -+...-++||++|++.+.
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 44555555 77888899999977666 223367899999988764
No 130
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=52.74 E-value=36 Score=24.69 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=37.0
Q ss_pred EEEcCCcccCCccCC---CCCeEEEE--ee-CE-----EEEEEEcc---CCeEEEEE-----ECCCCEEEeCC-CCeEEE
Q 045405 103 IDLDVGGINPPHTHP---RGTEAGIV--TR-GT-----VLVGLVTT---NNTFFSKV-----LTPGKVFLIPR-ALVHFQ 162 (240)
Q Consensus 103 v~l~pGg~~~pH~Hp---~a~Ei~yV--l~-G~-----~~v~~v~~---~g~~~~~~-----l~~GDv~v~P~-G~~H~~ 162 (240)
....+|+...||+.. ....+.++ +. .. +...+.+. ++...... .++|++++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 456889999999875 33333333 34 21 33344332 11111222 88999999999 999998
Q ss_pred Eec
Q 045405 163 LNV 165 (240)
Q Consensus 163 ~N~ 165 (240)
.-.
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 766
No 131
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=51.66 E-value=83 Score=22.15 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=33.7
Q ss_pred EeeCEEEEEEEccCC-eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405 125 VTRGTVLVGLVTTNN-TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173 (240)
Q Consensus 125 Vl~G~~~v~~v~~~g-~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i 173 (240)
-..|+..+.+.+.+| .+++..+++||..-++.+.. +....|+..++-+
T Consensus 4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~-~~i~iGna~~v~v 52 (77)
T PF13464_consen 4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEP-FRIRIGNAGAVEV 52 (77)
T ss_pred EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCC-EEEEEeCCCcEEE
Confidence 345778888887777 57889999999998855544 3345676665544
No 132
>PHA02890 hypothetical protein; Provisional
Probab=50.66 E-value=1e+02 Score=27.59 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=34.6
Q ss_pred EEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405 123 GIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN 164 (240)
Q Consensus 123 ~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N 164 (240)
+.+++|+.++.+.. +++..+..+++||.|.+--+.-|....
T Consensus 96 VlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 96 VACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred EEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc
Confidence 45789999998864 356678899999999999999999875
No 133
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=49.81 E-value=33 Score=23.27 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=21.9
Q ss_pred EEEEEccCCeEEEEEECCCCEEEeCCCCeEE
Q 045405 131 LVGLVTTNNTFFSKVLTPGKVFLIPRALVHF 161 (240)
Q Consensus 131 ~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~ 161 (240)
++++.|+.|+.++..|++|..+.--+|.++.
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~H 41 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIRH 41 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEEH
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccch
Confidence 6788899999999999999999888887654
No 134
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=49.45 E-value=40 Score=28.56 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=73.8
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeC---CCCe--EEEEecCCCCEEEEEEE
Q 045405 102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIP---RALV--HFQLNVGNEPATFIPIF 176 (240)
Q Consensus 102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P---~G~~--H~~~N~G~~~a~~i~~~ 176 (240)
...+++|..+- +-....+.+++|++|.+++.....+++..-..+.+||++-.. .+.. +.... .++.+++.+=
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A--~~~~~~~~i~ 108 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSART--LTRSRVLMIP 108 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEE--cCceEEEEEe
Confidence 46677777542 334456789999999999987655455445678899976432 1222 22232 2344444321
Q ss_pred e-------CCCCCcee----------------------------ccchhhc----CC------CCCCHHHHHhhcCCCHH
Q 045405 177 N-------TQNPGVSD----------------------------SIGTLFD----TT------PPVPNEVLTKSFRVGDD 211 (240)
Q Consensus 177 ~-------s~~Pg~~~----------------------------~~~~lf~----s~------~~~p~~vla~af~v~~~ 211 (240)
. .++|.... ++..+.. .+ -.+..+.+|..+|++.+
T Consensus 109 ~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~Ll~~~~~~~~~~~~~i~~t~~~iA~~lG~tre 188 (236)
T PRK09392 109 AELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQKLRSSAERLANYLLKQSLRQGGADVVTLPYEKRVLASYLGMTPE 188 (236)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhccccCCCcEEEeeCCHHHHHHHhCCChh
Confidence 1 12442110 1111210 00 02346789999999999
Q ss_pred HHHHHHhhcCCCceEEecCCeeeec
Q 045405 212 VINTIRAARAQSSWINILDGRSISF 236 (240)
Q Consensus 212 ~v~~l~~~~~~~~~i~~~~~~~~~~ 236 (240)
++.++.++....+. . ..++++..
T Consensus 189 tvsR~l~~L~~~gl-~-~~~~~i~I 211 (236)
T PRK09392 189 NLSRAFAALASHGV-H-VDGSAVTI 211 (236)
T ss_pred HHHHHHHHHHhCCe-E-eeCCEEEE
Confidence 99998887776663 3 34455543
No 135
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.54 E-value=8.4 Score=33.55 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=36.5
Q ss_pred CccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEc
Q 045405 94 NTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT 136 (240)
Q Consensus 94 ~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~ 136 (240)
++-++|+....++|++++|.|-||.-+-+.=++-|++.+--.|
T Consensus 71 EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyD 113 (236)
T KOG4281|consen 71 ECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYD 113 (236)
T ss_pred ecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecc
Confidence 4557899999999999999999998888888899998876543
No 136
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=47.17 E-value=20 Score=24.78 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhcCCCceEEecCC
Q 045405 196 PVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDG 231 (240)
Q Consensus 196 ~~p~~vla~af~v~~~~v~~l~~~~~~~~~i~~~~~ 231 (240)
.++.+.+|...|++.+++.++.+.+...++|...++
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~ 63 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRILKRLKDEGIIEVKRG 63 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCC
Confidence 489999999999999999999998888888887665
No 137
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=46.59 E-value=1.3e+02 Score=25.23 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=46.5
Q ss_pred CCccCCCCCeEEEEeeC-EEEEEEEccCC-----eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405 112 PPHTHPRGTEAGIVTRG-TVLVGLVTTNN-----TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI 175 (240)
Q Consensus 112 ~pH~Hp~a~Ei~yVl~G-~~~v~~v~~~g-----~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~ 175 (240)
..-.||..++.++-+.| ...+.++.+++ .........|+-+..-+|..|...-.=+.+..++++
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vv 141 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVV 141 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEE
Confidence 34567888999998999 77777776543 355778999999999999999865443444555543
No 138
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=45.10 E-value=23 Score=33.32 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=46.5
Q ss_pred EEEEcC-CcccCCc---cCCCCCeEEEEeeCEEEEEEEccCC-------------------------eEEEEEECCCCEE
Q 045405 102 RIDLDV-GGINPPH---THPRGTEAGIVTRGTVLVGLVTTNN-------------------------TFFSKVLTPGKVF 152 (240)
Q Consensus 102 ~v~l~p-Gg~~~pH---~Hp~a~Ei~yVl~G~~~v~~v~~~g-------------------------~~~~~~l~~GDv~ 152 (240)
.+.+.| |...|.| +| +.-+...+=|+=+.-+..+.. ...+..=++|+.+
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~V 278 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETV 278 (427)
T ss_pred EEEeccCCCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCcee
Confidence 345564 4467888 77 367778888887777766632 1112344899999
Q ss_pred EeCCCCeEEEEecCCC
Q 045405 153 LIPRALVHFQLNVGNE 168 (240)
Q Consensus 153 v~P~G~~H~~~N~G~~ 168 (240)
++|.|.-|-..|.|++
T Consensus 279 FvPsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 279 FVPSGWHHQVLNLGDT 294 (427)
T ss_pred eccCccccccccccce
Confidence 9999999999999876
No 139
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=44.31 E-value=1.7e+02 Score=26.01 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=47.1
Q ss_pred eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC----C-eEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN----N-TFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----g-~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
+.+...+|++|.....-.-.+ +-++++++|++.+...+.. | |.-.++=++=|.+++|.|....+...++
T Consensus 29 VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~ 102 (270)
T COG3718 29 VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTD 102 (270)
T ss_pred EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecc
Confidence 556677899998776655533 6677889999998764321 2 2112333567999999999877766543
No 140
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=41.45 E-value=2.9e+02 Score=25.54 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=47.1
Q ss_pred cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeC
Q 045405 111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNT 178 (240)
Q Consensus 111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s 178 (240)
....+..+.+-+++-.+|.+.++- +-|| .-+.++++.++|+|.-..+.-.|...-.++.++..
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--EfGr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--EFGR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--eccc---eeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 455667777777777888877663 4465 46799999999999988887667777777777754
No 141
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=38.09 E-value=2.9e+02 Score=24.61 Aligned_cols=55 Identities=24% Similarity=0.447 Sum_probs=32.5
Q ss_pred EEcCCc---ccCCccCCCCC--------eEEEE----eeCEEEEEEEccCCeE-EEEEECCCCEEEeCCCC
Q 045405 104 DLDVGG---INPPHTHPRGT--------EAGIV----TRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPRAL 158 (240)
Q Consensus 104 ~l~pGg---~~~pH~Hp~a~--------Ei~yV----l~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~G~ 158 (240)
.+.||| ..|||-|..+. |..|- -||=+.-.+.+.++.+ ....+.-||++.+|+|.
T Consensus 159 V~Tp~Gn~SSYPPHKHD~d~~p~Es~LEEtYYHrlnP~QGF~fQRVYTddrsLDEtmaV~~~dvvlVP~GY 229 (270)
T COG3718 159 VITPGGNWSSYPPHKHDEDNLPHESYLEETYYHRLNPPQGFAFQRVYTDDRSLDETMAVENGDVVLVPKGY 229 (270)
T ss_pred EEcCCCCcCCCCCCcccccCCccchhhhhhhhhccCccccceEEEEEcCCCcccceeeeecCCEEEecCCc
Confidence 355665 36999996542 33332 2453333333332222 24678999999999996
No 142
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=38.01 E-value=83 Score=25.49 Aligned_cols=52 Identities=10% Similarity=-0.031 Sum_probs=35.2
Q ss_pred CCccCCCCCeEEEEeeCEEEEEEEccCC-e-----------------EEEEEECCCCEEEeCCCCeEEEE
Q 045405 112 PPHTHPRGTEAGIVTRGTVLVGLVTTNN-T-----------------FFSKVLTPGKVFLIPRALVHFQL 163 (240)
Q Consensus 112 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~-----------------~~~~~l~~GDv~v~P~G~~H~~~ 163 (240)
.+=.|.+--.+.|+++|+=.+++..-.. + .....|++|+.+++-++.+|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 3445666788899999988887754221 0 01357788888888888888764
No 143
>PHA00672 hypothetical protein
Probab=37.49 E-value=1.9e+02 Score=23.28 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=52.1
Q ss_pred cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEE
Q 045405 96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATF 172 (240)
Q Consensus 96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~ 172 (240)
.|+-...+.++.|.+..=-.| + -+-+++.+|.+.+... |. ..+|+.=.++.-|+|-.-..+.-.++.+..
T Consensus 45 ~GvYARei~IPkGt~LtG~~h-k-f~~~ii~sG~itV~td---ge--~~rl~g~~~i~~~aG~KragyAHeDT~wt~ 114 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALI-K-VSTVLIFSGHATVFIG---GE--AVELRGYHVIPASAGRKQAFVAHADTDLTM 114 (152)
T ss_pred cceeEEEEeccCceeeeeeee-E-eeEEEEecccEEEEeC---Cc--EEEEecceeeecCCCcccceeeeccceEEE
Confidence 477888899999998776777 3 3445999999998763 43 457888888888999887777655554443
No 144
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=37.07 E-value=2.2e+02 Score=22.84 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=39.6
Q ss_pred CCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE---ecCCCCEEEEEE
Q 045405 119 GTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL---NVGNEPATFIPI 175 (240)
Q Consensus 119 a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~---N~G~~~a~~i~~ 175 (240)
..-+.+|++|+=++.+. ++ .+...+|+.++.+..++-... ...++|...+.+
T Consensus 23 ~p~i~~vlQG~K~~~~g---~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 23 EPSICIVLQGSKRVHLG---DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred CCeEEEEEeeeEEEEEC---Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 36899999999988874 34 678999999999999976543 334567666654
No 145
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=36.38 E-value=1e+02 Score=28.71 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=59.5
Q ss_pred cCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEE--
Q 045405 77 VFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFL-- 153 (240)
Q Consensus 77 ~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v-- 153 (240)
..|..+..++.+. ++.-.-+.|++++..-++..+-.-+...+-.++|..-.+.++.++|+. -...|++||-+.
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~ 325 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGY 325 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 4455555554321 122456789999988876666555678999999999999999998863 457999999874
Q ss_pred eCCCCeEEEEec
Q 045405 154 IPRALVHFQLNV 165 (240)
Q Consensus 154 ~P~G~~H~~~N~ 165 (240)
++.+--|+-...
T Consensus 326 ~~~~~RHfG~~i 337 (344)
T PRK02290 326 LEEAARHFGMAI 337 (344)
T ss_pred ecCCccccccee
Confidence 466666664443
No 146
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=35.68 E-value=29 Score=20.92 Aligned_cols=28 Identities=4% Similarity=0.140 Sum_probs=20.6
Q ss_pred CCHHHHHhhcCCCHHHHHHHHhhcCCCc
Q 045405 197 VPNEVLTKSFRVGDDVINTIRAARAQSS 224 (240)
Q Consensus 197 ~p~~vla~af~v~~~~v~~l~~~~~~~~ 224 (240)
+..+-+|...|+..|++.++.+++...+
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~g 30 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQG 30 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcC
Confidence 5678899999999999999888765444
No 147
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=31.16 E-value=88 Score=19.89 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=28.7
Q ss_pred CC-CHHHHHhhcCCCHHHHHHHHhhcCCCceEEecCCe
Q 045405 196 PV-PNEVLTKSFRVGDDVINTIRAARAQSSWINILDGR 232 (240)
Q Consensus 196 ~~-p~~vla~af~v~~~~v~~l~~~~~~~~~i~~~~~~ 232 (240)
.+ +..-|++.|+++...+.+..+.....+.|...+++
T Consensus 19 ~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~~~~~~ 56 (60)
T smart00345 19 KLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGS 56 (60)
T ss_pred cCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 35 57789999999999999887777766777655544
No 148
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.62 E-value=90 Score=32.07 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=34.3
Q ss_pred EEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEE
Q 045405 103 IDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVF 152 (240)
Q Consensus 103 v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~ 152 (240)
..+.||-.+...=.+- +|+.||++|++.+.-.+.+|......|++||++
T Consensus 445 ~~f~pge~iireGd~v-~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 445 EYFTPGEYIIREGDPV-TDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred hccCCCCeEEecCCcc-ceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 3456666554444543 899999999997765543344557899999997
No 149
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=29.51 E-value=1.5e+02 Score=27.74 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=52.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEE--eCCCCeEEEEec
Q 045405 97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFL--IPRALVHFQLNV 165 (240)
Q Consensus 97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v--~P~G~~H~~~N~ 165 (240)
-..+.|++++..-++...-..+..++..++|..-.+.++.++|+. -...|++||-+. ++.+--|+-...
T Consensus 276 ~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~~~~~~RHfG~~I 347 (354)
T PF01959_consen 276 TAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVYLEEAGRHFGMKI 347 (354)
T ss_pred EEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEecCCCcccceEe
Confidence 466889999988876555544778999999999999999998864 357899999874 466666765443
No 150
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=28.14 E-value=1.9e+02 Score=23.86 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=40.6
Q ss_pred cCCccCCCCCeEEEEeeCEEEEEEEccCC-e-------------------EEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNN-T-------------------FFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~-------------------~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
.-+-+|.+--.+-++++|+=.+++....+ + ....+|.+|+..+|=+|.+|.-.....
T Consensus 61 ~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 61 KKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred cchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 44555666789999999988887765432 1 124688999999999999998654443
No 151
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=27.77 E-value=2e+02 Score=22.82 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=19.7
Q ss_pred cCCccCCCCCeEEEEeeCEEEEEEEc
Q 045405 111 NPPHTHPRGTEAGIVTRGTVLVGLVT 136 (240)
Q Consensus 111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~ 136 (240)
..+=.|.+--.+-|+++|+=++++..
T Consensus 61 ~~~E~Hr~YiDIq~~l~G~E~i~~~~ 86 (142)
T TIGR00022 61 KKAELHHRYLDIQLLLRGEENIEVGT 86 (142)
T ss_pred cchhhhhheEEEEEeecceEEEEEec
Confidence 34455666789999999998888853
No 152
>PLN02288 mannose-6-phosphate isomerase
Probab=27.57 E-value=43 Score=31.72 Aligned_cols=21 Identities=24% Similarity=0.293 Sum_probs=18.9
Q ss_pred EEEECCCCEEEeCCCCeEEEE
Q 045405 143 SKVLTPGKVFLIPRALVHFQL 163 (240)
Q Consensus 143 ~~~l~~GDv~v~P~G~~H~~~ 163 (240)
...|++||.+++|+|.+|...
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 468999999999999999864
No 153
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=27.21 E-value=67 Score=20.24 Aligned_cols=29 Identities=7% Similarity=-0.003 Sum_probs=19.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhcCCCc
Q 045405 196 PVPNEVLTKSFRVGDDVINTIRAARAQSS 224 (240)
Q Consensus 196 ~~p~~vla~af~v~~~~v~~l~~~~~~~~ 224 (240)
+.+..-+++.+|++..++.+..+.+...+
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYREEG 45 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHccccc
Confidence 68888999999999999999999876443
No 154
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=27.18 E-value=1.2e+02 Score=19.88 Aligned_cols=35 Identities=6% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhcCCCceEEecC
Q 045405 196 PVPNEVLTKSFRVGDDVINTIRAARAQSSWINILD 230 (240)
Q Consensus 196 ~~p~~vla~af~v~~~~v~~l~~~~~~~~~i~~~~ 230 (240)
.++..-+++.++++..++.++.+.....+.|...+
T Consensus 25 ~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~~ 59 (67)
T cd00092 25 PLTRQEIADYLGLTRETVSRTLKELEEEGLISRRG 59 (67)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 58889999999999999999888887777777655
No 155
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.00 E-value=1.2e+02 Score=29.84 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=26.1
Q ss_pred CCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEE
Q 045405 118 RGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVF 152 (240)
Q Consensus 118 ~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~ 152 (240)
-+.|+++|-+|.+.+ ++.+|...-.++++|+++
T Consensus 347 vgkEMyIVk~G~L~V--v~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 347 VGKEMYIVKEGKLAV--VADDGVTVFVTLKAGSVF 379 (536)
T ss_pred ccceEEEEEccEEEE--EecCCcEEEEEecCCcee
Confidence 468999999999864 455676666899999887
No 156
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=26.61 E-value=3e+02 Score=21.99 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=31.5
Q ss_pred cCCccCCCCCeEEEEeeCEEEEEE-EccCC-------------eE-------EEEEECCCCEEEeCCCCeEEEE
Q 045405 111 NPPHTHPRGTEAGIVTRGTVLVGL-VTTNN-------------TF-------FSKVLTPGKVFLIPRALVHFQL 163 (240)
Q Consensus 111 ~~pH~Hp~a~Ei~yVl~G~~~v~~-v~~~g-------------~~-------~~~~l~~GDv~v~P~G~~H~~~ 163 (240)
..+=.|.+--.+-|+++|+=++++ .+..+ .. ....|++|+.++|-++.+|.-.
T Consensus 61 ~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 61 RRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp S-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred cceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 344557777889999999988888 33221 00 1357899999999999999854
No 157
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=26.28 E-value=1.1e+02 Score=18.54 Aligned_cols=35 Identities=6% Similarity=0.147 Sum_probs=29.4
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhcCCCceEEecC
Q 045405 196 PVPNEVLTKSFRVGDDVINTIRAARAQSSWINILD 230 (240)
Q Consensus 196 ~~p~~vla~af~v~~~~v~~l~~~~~~~~~i~~~~ 230 (240)
.++..-+++.++++...+.+..+.....+.+...+
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~~ 42 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLISREG 42 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 46778899999999999999888888788877655
No 158
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=25.99 E-value=1.2e+02 Score=31.27 Aligned_cols=52 Identities=13% Similarity=-0.001 Sum_probs=33.6
Q ss_pred EEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEE
Q 045405 100 LFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVF 152 (240)
Q Consensus 100 ~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~ 152 (240)
+....+.||..+-.- -..++++.+|++|++.+...+.+.+..-..+++||++
T Consensus 397 ~~~~~~~pge~I~~q-ge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQ-NEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEEC-CCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 344567888754222 2235789999999999864322223345678999987
No 159
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=25.76 E-value=90 Score=25.16 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=18.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhcC---CCceEEecCC
Q 045405 196 PVPNEVLTKSFRVGDDVINTIRAARA---QSSWINILDG 231 (240)
Q Consensus 196 ~~p~~vla~af~v~~~~v~~l~~~~~---~~~~i~~~~~ 231 (240)
++..+.+.+ .+++|++.-- ....|.|.|.
T Consensus 154 G~tretvsR-------~l~~l~~~g~I~~~~~~i~I~d~ 185 (193)
T TIGR03697 154 GSTRVTITR-------LLGDLRKKKLISIHKKKITVHDP 185 (193)
T ss_pred CCcHHHHHH-------HHHHHHHCCCEEecCCEEEEeCH
Confidence 488999986 4556655432 3446767663
No 160
>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481
Probab=25.01 E-value=70 Score=23.75 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=35.7
Q ss_pred ccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCCceEEecCCee
Q 045405 186 SIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRS 233 (240)
Q Consensus 186 ~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~~~i~~~~~~~ 233 (240)
+...+... +.|..-+++.||++..++.|..+.+...+.-+..|.-|
T Consensus 17 lv~~vv~~--g~~~a~aA~~~gVS~~Ta~kW~~Ryra~G~~GL~DRSS 62 (85)
T PF13011_consen 17 LVRRVVEQ--GWPVAHAAAEFGVSRRTAYKWLARYRAEGEAGLQDRSS 62 (85)
T ss_pred HHHHHHHc--CCcHHHHHHHhCCCHHHHHHHHHHHHHcCcccccccCC
Confidence 34445443 78888999999999999999999998777767766544
No 161
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=24.76 E-value=1.5e+02 Score=19.20 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=28.1
Q ss_pred CC-HHHHHhhcCCCHHHHHHHHhhcCCCceEEecCCe
Q 045405 197 VP-NEVLTKSFRVGDDVINTIRAARAQSSWINILDGR 232 (240)
Q Consensus 197 ~p-~~vla~af~v~~~~v~~l~~~~~~~~~i~~~~~~ 232 (240)
++ .+-|+..|+++...+.+..+.....+.|...+++
T Consensus 25 ~~~~~~la~~~~is~~~v~~~l~~L~~~G~i~~~~~~ 61 (66)
T cd07377 25 LPSERELAEELGVSRTTVREALRELEAEGLVERRPGR 61 (66)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 44 7789999999999999988877777777655443
No 162
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=24.64 E-value=1e+02 Score=19.01 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=28.0
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhcCCCceEEecCCe
Q 045405 196 PVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGR 232 (240)
Q Consensus 196 ~~p~~vla~af~v~~~~v~~l~~~~~~~~~i~~~~~~ 232 (240)
.++..-+++.|+++..++.+..+.....+.|.-.+++
T Consensus 14 ~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~~~~~ 50 (53)
T smart00420 14 KVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGG 50 (53)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 5788889999999999998887777656666544443
No 163
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=24.39 E-value=2.6e+02 Score=19.73 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=35.1
Q ss_pred EEEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCe
Q 045405 102 RIDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALV 159 (240)
Q Consensus 102 ~v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~ 159 (240)
++.|.|+..+ ..-........+.+.+|++.+.+-....+ ...++.+...+..+|..
T Consensus 20 ~v~l~~~s~~~~~~~~~~~~~~~~L~~G~~~~~~~~~~~~--~~~V~T~~~~i~v~GT~ 76 (98)
T PF04773_consen 20 RVRLGPNSRVSVDRDSGSEPTRLRLLSGEILFDVSPGKKR--PFEVRTPTATIGVRGTR 76 (98)
T ss_pred EEEECCCcEEEEEcccCCCceEEEEcCCCEEEEEcccCCC--CEEEEeCCEEEEEecCE
Confidence 4666676654 22222233456888999998877543222 26778888888888843
No 164
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=23.98 E-value=39 Score=35.55 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=44.1
Q ss_pred CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEE
Q 045405 91 PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVF 152 (240)
Q Consensus 91 P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~ 152 (240)
|-|..+..++.++.++||...---- ..++++.+|+.|+++.-.-..+|+. ...++.+||++
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqg-D~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~i 560 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQG-DSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLI 560 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcC-CccCcEEEEecCeehhhhhccCccchhhhhccCccee
Confidence 4456667888999999998764432 3578999999999986554344443 44677889887
No 165
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=23.89 E-value=1.1e+02 Score=22.62 Aligned_cols=28 Identities=14% Similarity=-0.002 Sum_probs=19.4
Q ss_pred cCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405 137 TNNTFFSKVLTPGKVFLIPRALVHFQLN 164 (240)
Q Consensus 137 ~~g~~~~~~l~~GDv~v~P~G~~H~~~N 164 (240)
.+|+.....++.||.+++|.+..-.+..
T Consensus 49 ~~g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T PF00166_consen 49 ENGEEVPMDVKVGDKVLFPKYAGTEVKF 76 (93)
T ss_dssp TTSSEEETSS-TTSEEEEETTTSEEEEE
T ss_pred CCCcEeeeeeeeccEEeccccCceEEEE
Confidence 3455456688999999999987555544
No 166
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=23.40 E-value=94 Score=25.35 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=17.8
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhhcC---CCceEEecCC
Q 045405 196 PVPNEVLTKSFRVGDDVINTIRAARA---QSSWINILDG 231 (240)
Q Consensus 196 ~~p~~vla~af~v~~~~v~~l~~~~~---~~~~i~~~~~ 231 (240)
++.++.+.+ .+++|++..- ....|.|.|.
T Consensus 160 G~tretvsR-------~l~~l~~~g~I~~~~~~i~I~d~ 191 (202)
T PRK13918 160 GSVRETVTK-------VIGELSREGYIRSGYGKIQLLDL 191 (202)
T ss_pred CccHHHHHH-------HHHHHHHCCCEEcCCCEEEEECH
Confidence 488888886 4556655332 3456777664
No 167
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=22.86 E-value=1.3e+02 Score=25.15 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=22.0
Q ss_pred CCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC
Q 045405 118 RGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR 156 (240)
Q Consensus 118 ~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~ 156 (240)
...-++|+++|++.+.. +++ ...|.+||.+++-.
T Consensus 134 ~~~~l~~~~~G~~~i~~---~~~--~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 134 ASTVLVYVLEGAWSITE---GGN--CISLSAGDLLLIDD 167 (184)
T ss_dssp -SEEEEEESSS-EEECC---CEE--EEEE-TT-EEEEES
T ss_pred CCEEEEEEeeCcEEEec---CCC--ceEcCCCCEEEEeC
Confidence 45677899999876542 123 67999999998876
No 168
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=22.40 E-value=93 Score=20.32 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=21.4
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHhh
Q 045405 196 PVPNEVLTKSFRVGDDVINTIRAA 219 (240)
Q Consensus 196 ~~p~~vla~af~v~~~~v~~l~~~ 219 (240)
+.+.+.|+.-||+++.++.++...
T Consensus 19 ~~~~~~La~~FgIs~stvsri~~~ 42 (53)
T PF13613_consen 19 NLTFQDLAYRFGISQSTVSRIFHE 42 (53)
T ss_pred CCcHhHHhhheeecHHHHHHHHHH
Confidence 688999999999999999998765
No 169
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=22.11 E-value=92 Score=19.53 Aligned_cols=32 Identities=9% Similarity=0.244 Sum_probs=23.1
Q ss_pred CCCCCHHHHHhhcCCCHHHHHHHHhhcCCCce
Q 045405 194 TPPVPNEVLTKSFRVGDDVINTIRAARAQSSW 225 (240)
Q Consensus 194 ~~~~p~~vla~af~v~~~~v~~l~~~~~~~~~ 225 (240)
+|+++..-+++.++++...+.+..+.....+.
T Consensus 15 ~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~ 46 (48)
T PF13412_consen 15 NPRITQKELAEKLGISRSTVNRYLKKLEEKGL 46 (48)
T ss_dssp CTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcC
Confidence 56899999999999999998877665543333
No 170
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=21.24 E-value=1e+02 Score=19.36 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=21.4
Q ss_pred hhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 045405 189 TLFDTTPPVPNEVLTKSFRVGDDVINTIRAA 219 (240)
Q Consensus 189 ~lf~s~~~~p~~vla~af~v~~~~v~~l~~~ 219 (240)
.++.. +++..-+|+.||++..++-+..+.
T Consensus 16 ~l~~~--G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 16 ELYAE--GMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp HHHHT--T--HHHHHHHTTS-HHHHHHHHCC
T ss_pred HHHHC--CCCHHHHHHHHCcCHHHHHHHHhc
Confidence 35665 799999999999999999887654
No 171
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=21.20 E-value=1.4e+02 Score=25.05 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=33.3
Q ss_pred CeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405 120 TEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN 164 (240)
Q Consensus 120 ~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N 164 (240)
.-+..-++|++.+.+.. .|..++.+|.+|+-+++..+.+-.+..
T Consensus 130 g~~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 130 GLFMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp -EEEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred CcEEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEECC
Confidence 45556788999887765 478888999999999999987776654
No 172
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=21.07 E-value=2e+02 Score=23.32 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=24.9
Q ss_pred CeEEEEeeCEEEEEEEccCCeEEEEEECCCCEE
Q 045405 120 TEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVF 152 (240)
Q Consensus 120 ~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~ 152 (240)
.+-.++-+|++.+.+++.+|+..+.+..+|+.+
T Consensus 26 ~~~~~~~~g~v~I~~~~~dG~~~~v~~~~G~sL 58 (143)
T PTZ00490 26 SRALYSTPGKVKVCVKKRDGTHCDVEVPVGMSL 58 (143)
T ss_pred eeeeccCCCcEEEEEEcCCCCEEEEEECCCccH
Confidence 455566899999999998886556677777654
No 173
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=20.90 E-value=95 Score=21.12 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=16.4
Q ss_pred CHHHHHhhcCCCHHHHHHHHhhc
Q 045405 198 PNEVLTKSFRVGDDVINTIRAAR 220 (240)
Q Consensus 198 p~~vla~af~v~~~~v~~l~~~~ 220 (240)
.+.-|.+.+|++++++++|++.+
T Consensus 45 ~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 45 VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc
Confidence 46678888999999999998753
No 174
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=20.82 E-value=4.4e+02 Score=23.53 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=44.2
Q ss_pred CccceEEEEEEEcCCcc---cCCccCCCCCeEEEEee---CEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405 94 NTQGVALFRIDLDVGGI---NPPHTHPRGTEAGIVTR---GTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167 (240)
Q Consensus 94 ~~~gls~~~v~l~pGg~---~~pH~Hp~a~Ei~yVl~---G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~ 167 (240)
+.-.+++....|+||.+ .|+|.|.|..|..+-.. -+-.+.+-.+-.+....+++--+.++-|+=.+|.- .|.
T Consensus 173 ~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG--~GT 250 (278)
T COG3717 173 ESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSG--VGT 250 (278)
T ss_pred hhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecC--ccc
Confidence 33357788889999986 58999999888654321 11111111111222234455555555566666653 234
Q ss_pred CCEEEEEEEe
Q 045405 168 EPATFIPIFN 177 (240)
Q Consensus 168 ~~a~~i~~~~ 177 (240)
..-.||...-
T Consensus 251 ~~YtFIWaMa 260 (278)
T COG3717 251 ANYTFIWAMA 260 (278)
T ss_pred cceEEEEEec
Confidence 4445554443
No 175
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.11 E-value=65 Score=24.30 Aligned_cols=6 Identities=33% Similarity=0.622 Sum_probs=2.3
Q ss_pred HHHhhc
Q 045405 19 LLMLPF 24 (240)
Q Consensus 19 ~~~~~~ 24 (240)
||+++.
T Consensus 16 lLlisS 21 (95)
T PF07172_consen 16 LLLISS 21 (95)
T ss_pred HHHHHh
Confidence 333333
Done!