BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045407
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RYO|A Chain A, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|B Chain B, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|C Chain C, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|D Chain D, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|E Chain E, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|F Chain F, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|G Chain G, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|H Chain H, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|I Chain I, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|J Chain J, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|K Chain K, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
pdb|3RYO|L Chain L, Crystal Structure Of Enhanced Intracellular Survival (Eis)
Protein From Mycobacterium Tuberculosis With Acetyl Coa
Length = 428
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 246 CCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANF 296
C LH+R Y LHA +GGI+ YG ++ +L + RRFA F
Sbjct: 127 CAELHRRIADSGYPVAALHA--SEGGIYGRFGYGPATTLHELTVDRRFARF 175
>pdb|3UY5|A Chain A, Crystal Structure Of Eis From Mycobacterium Tuberculosis
pdb|3SXO|A Chain A, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXO|B Chain B, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
Length = 428
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 246 CCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANF 296
C LH+R Y LHA +GGI+ YG ++ +L + RRFA F
Sbjct: 127 CAELHRRIADSGYPVAALHA--SEGGIYGRFGYGPATTLHELTVDRRFARF 175
>pdb|3R1K|A Chain A, Crystal Structure Of Acetyltransferase Eis From
Mycobacterium Tuberculosis H37rv In Complex With Coa And
An Acetamide Moiety
Length = 428
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 246 CCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANF 296
C LH+R Y LHA +GGI+ YG ++ +L + RRFA F
Sbjct: 127 CAELHRRIADSGYPVAALHA--SEGGIYGRFGYGPATTLHELTVDRRFARF 175
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 17/112 (15%)
Query: 152 WCMENNLNKVGADGYSRISLFHGNVL--------QPLEAKL--VRYEPQKLVRNISLEEC 201
WCM+ L DGY + L G L + L+ K+ V E V+N+
Sbjct: 108 WCMKQTLKGFSGDGYPNMLLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQ 167
Query: 202 DNTLETSTIESAVQDNFTASSGDNCSKQKSSLP-----ARDIICAFNYSCCC 248
L + V D+ T S DN + SL A D++ A +C C
Sbjct: 168 RGKLTIPAMN--VNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTACVC 217
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWC 153
P + ++ L+ GR+ + Q DF TAL+ LR G L + ++
Sbjct: 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE-------GNQLYQDIVKLL 164
Query: 154 MENNLNKVGADGYSRISLFHGN 175
MEN ++ D R ++ + N
Sbjct: 165 MENGADQSIKDNSGRTAMDYAN 186
>pdb|3HM2|A Chain A, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|B Chain B, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|C Chain C, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|D Chain D, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|E Chain E, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|F Chain F, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|G Chain G, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|H Chain H, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
Length = 178
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 123 GTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN 159
G+ ++ EWLRS + TAV ++ E E + N +N
Sbjct: 35 GSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAIN 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,970,788
Number of Sequences: 62578
Number of extensions: 379180
Number of successful extensions: 972
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 8
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)