BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045407
         (382 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8K4B4|IL23R_MOUSE Interleukin-23 receptor OS=Mus musculus GN=Il23r PE=2 SV=1
          Length = 644

 Score = 32.7 bits (73), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 281 TSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSL 340
           T++ Q   ++   ANFTYV +Q+EF  +E  ++       Q+  K+       NW+ WS 
Sbjct: 259 TTTNQTWSVKEFDANFTYV-QQSEF-YLEPDSKYVFQVRCQETGKR-------NWQPWSS 309

Query: 341 PEIKDCLEEAGFRSVHFW 358
           P +    +E G R+   W
Sbjct: 310 PFVHQTSQETGKRNWQPW 327


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,667,161
Number of Sequences: 539616
Number of extensions: 6691229
Number of successful extensions: 30595
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 28449
Number of HSP's gapped (non-prelim): 1566
length of query: 382
length of database: 191,569,459
effective HSP length: 119
effective length of query: 263
effective length of database: 127,355,155
effective search space: 33494405765
effective search space used: 33494405765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)