Query 045407
Match_columns 382
No_of_seqs 169 out of 413
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03438 probable methyltrans 99.9 2.5E-22 5.4E-27 194.9 22.3 229 77-360 14-291 (301)
2 PF01209 Ubie_methyltran: ubiE 99.8 7.8E-19 1.7E-23 166.0 9.5 172 109-357 43-218 (233)
3 PF12847 Methyltransf_18: Meth 99.8 3.7E-18 8.1E-23 139.0 9.8 107 115-277 3-111 (112)
4 PRK15451 tRNA cmo(5)U34 methyl 99.7 3E-18 6.6E-23 161.4 8.2 198 86-361 27-232 (247)
5 PLN02233 ubiquinone biosynthes 99.7 5.1E-17 1.1E-21 155.0 14.7 172 113-358 73-247 (261)
6 TIGR00740 methyltransferase, p 99.7 3E-17 6.5E-22 152.8 8.7 173 115-363 55-231 (239)
7 PLN02396 hexaprenyldihydroxybe 99.7 1.9E-15 4E-20 149.6 19.2 154 115-357 133-287 (322)
8 COG2226 UbiE Methylase involve 99.7 8.4E-17 1.8E-21 153.6 8.9 108 113-279 51-159 (238)
9 PRK14103 trans-aconitate 2-met 99.7 8.4E-16 1.8E-20 144.6 14.3 101 112-279 28-128 (255)
10 PF08241 Methyltransf_11: Meth 99.7 6.6E-16 1.4E-20 120.2 10.3 95 118-275 1-95 (95)
11 TIGR02752 MenG_heptapren 2-hep 99.6 1.3E-15 2.8E-20 140.0 11.8 103 114-275 46-149 (231)
12 PTZ00098 phosphoethanolamine N 99.6 3.7E-15 8.1E-20 142.3 15.1 178 83-358 20-201 (263)
13 PRK11036 putative S-adenosyl-L 99.6 2.8E-15 6E-20 141.3 13.9 111 112-281 43-153 (255)
14 TIGR00452 methyltransferase, p 99.6 5.2E-15 1.1E-19 146.1 14.1 192 83-371 92-285 (314)
15 PLN02244 tocopherol O-methyltr 99.6 3.6E-15 7.8E-20 147.4 12.6 105 113-276 118-222 (340)
16 PF13649 Methyltransf_25: Meth 99.6 1.6E-15 3.4E-20 123.4 7.8 98 117-271 1-101 (101)
17 PRK15068 tRNA mo(5)U34 methylt 99.6 1.2E-14 2.7E-19 143.2 15.7 149 114-358 123-273 (322)
18 PRK11207 tellurite resistance 99.6 7.5E-15 1.6E-19 134.3 10.2 102 114-275 31-132 (197)
19 PRK06202 hypothetical protein; 99.6 2.5E-14 5.5E-19 132.7 13.2 160 112-359 59-222 (232)
20 PF13489 Methyltransf_23: Meth 99.6 2.3E-14 4.9E-19 122.2 11.4 139 113-356 22-160 (161)
21 TIGR02716 C20_methyl_CrtF C-20 99.6 1.4E-13 2.9E-18 133.1 17.9 106 114-278 150-256 (306)
22 PRK10258 biotin biosynthesis p 99.6 3E-14 6.5E-19 133.2 12.1 102 112-279 41-142 (251)
23 PLN02336 phosphoethanolamine N 99.5 5.1E-14 1.1E-18 143.5 13.8 147 114-358 267-413 (475)
24 PF13847 Methyltransf_31: Meth 99.5 3.6E-14 7.7E-19 123.3 10.6 106 114-277 4-110 (152)
25 PLN02490 MPBQ/MSBQ methyltrans 99.5 4.8E-14 1E-18 140.8 12.7 100 114-275 114-213 (340)
26 PRK11873 arsM arsenite S-adeno 99.5 1.4E-13 3E-18 130.3 14.3 151 114-359 78-230 (272)
27 TIGR00477 tehB tellurite resis 99.5 7.9E-14 1.7E-18 127.4 11.5 101 114-275 31-131 (195)
28 smart00828 PKS_MT Methyltransf 99.5 1.8E-13 4E-18 125.2 13.5 141 116-358 2-143 (224)
29 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 2.5E-13 5.4E-18 122.3 13.3 119 98-278 25-145 (223)
30 TIGR02021 BchM-ChlM magnesium 99.5 5.6E-13 1.2E-17 122.5 15.7 151 113-358 55-205 (219)
31 TIGR03587 Pse_Me-ase pseudamin 99.5 3.5E-13 7.6E-18 124.8 13.0 120 95-281 28-147 (204)
32 PRK00216 ubiE ubiquinone/menaq 99.5 4.2E-13 9E-18 122.0 12.5 107 114-278 52-160 (239)
33 PRK08317 hypothetical protein; 99.5 3.8E-13 8.2E-18 121.3 11.4 108 109-276 15-123 (241)
34 PRK01683 trans-aconitate 2-met 99.5 3.2E-13 6.9E-18 126.6 11.2 100 114-278 32-131 (258)
35 PF08242 Methyltransf_12: Meth 99.5 8.7E-15 1.9E-19 117.9 0.0 99 118-273 1-99 (99)
36 PLN02585 magnesium protoporphy 99.5 3.3E-12 7.2E-17 126.3 17.9 103 114-275 145-248 (315)
37 TIGR02469 CbiT precorrin-6Y C5 99.4 2.3E-12 5.1E-17 105.6 13.4 103 115-278 21-123 (124)
38 PRK12335 tellurite resistance 99.4 4.6E-13 1E-17 129.0 10.4 101 114-275 121-221 (287)
39 PRK00107 gidB 16S rRNA methylt 99.4 1.2E-12 2.7E-17 120.3 11.8 101 114-278 46-146 (187)
40 TIGR00138 gidB 16S rRNA methyl 99.4 6.8E-13 1.5E-17 120.8 9.7 100 114-277 43-142 (181)
41 KOG1270 Methyltransferases [Co 99.4 7.5E-13 1.6E-17 128.3 10.0 170 98-357 67-247 (282)
42 smart00138 MeTrc Methyltransfe 99.4 1.6E-12 3.4E-17 124.9 12.1 111 113-276 99-241 (264)
43 TIGR02072 BioC biotin biosynth 99.4 9.5E-13 2.1E-17 119.2 9.9 103 114-279 35-137 (240)
44 TIGR03840 TMPT_Se_Te thiopurin 99.4 3.1E-12 6.8E-17 119.6 12.9 125 99-278 21-153 (213)
45 PRK05134 bifunctional 3-demeth 99.4 2.5E-12 5.4E-17 118.6 11.9 155 114-358 49-204 (233)
46 PF03848 TehB: Tellurite resis 99.4 6.4E-12 1.4E-16 116.8 13.9 103 113-276 30-132 (192)
47 TIGR01983 UbiG ubiquinone bios 99.4 8E-12 1.7E-16 114.0 14.0 178 98-363 30-207 (224)
48 PRK15001 SAM-dependent 23S rib 99.4 7.7E-12 1.7E-16 126.6 14.8 129 115-299 230-360 (378)
49 PF02353 CMAS: Mycolic acid cy 99.4 5.3E-12 1.1E-16 122.4 13.0 152 115-358 64-216 (273)
50 PF05401 NodS: Nodulation prot 99.4 3.4E-12 7.4E-17 119.4 11.0 104 114-278 44-147 (201)
51 PRK07580 Mg-protoporphyrin IX 99.4 1.9E-11 4.2E-16 111.7 15.6 150 114-358 64-213 (230)
52 TIGR00537 hemK_rel_arch HemK-r 99.4 7.1E-12 1.5E-16 112.1 11.9 114 97-275 7-138 (179)
53 PRK08287 cobalt-precorrin-6Y C 99.4 8.4E-12 1.8E-16 112.3 12.4 101 114-278 32-132 (187)
54 TIGR03534 RF_mod_PrmC protein- 99.3 3E-11 6.5E-16 111.6 15.6 62 114-179 88-149 (251)
55 PRK05785 hypothetical protein; 99.3 8.9E-12 1.9E-16 116.9 12.1 96 114-278 52-147 (226)
56 KOG1540 Ubiquinone biosynthesi 99.3 7.5E-12 1.6E-16 121.3 11.6 164 115-356 102-278 (296)
57 PRK06922 hypothetical protein; 99.3 8.8E-12 1.9E-16 133.4 12.4 110 114-277 419-538 (677)
58 PF13659 Methyltransf_26: Meth 99.3 5.3E-12 1.1E-16 103.7 8.4 108 115-275 2-113 (117)
59 PRK04266 fibrillarin; Provisio 99.3 4.5E-11 9.8E-16 113.0 15.9 104 115-278 74-177 (226)
60 PRK00121 trmB tRNA (guanine-N( 99.3 6.8E-12 1.5E-16 115.4 9.5 112 114-279 41-158 (202)
61 PLN03075 nicotianamine synthas 99.3 4.5E-11 9.8E-16 117.7 15.7 136 78-278 97-234 (296)
62 TIGR03439 methyl_EasF probable 99.3 7.5E-10 1.6E-14 110.0 22.9 230 76-360 26-310 (319)
63 TIGR03533 L3_gln_methyl protei 99.3 3.7E-11 8.1E-16 116.5 13.4 63 114-179 122-184 (284)
64 PRK11088 rrmA 23S rRNA methylt 99.3 2E-11 4.3E-16 116.6 10.8 95 114-279 86-183 (272)
65 PRK09489 rsmC 16S ribosomal RN 99.3 7.2E-11 1.6E-15 117.8 15.1 124 115-299 198-323 (342)
66 PRK13255 thiopurine S-methyltr 99.3 5E-11 1.1E-15 111.9 13.0 122 99-275 24-153 (218)
67 COG2227 UbiG 2-polyprenyl-3-me 99.3 9.6E-12 2.1E-16 119.2 8.0 102 115-278 61-163 (243)
68 PRK11705 cyclopropane fatty ac 99.3 5.3E-11 1.2E-15 120.2 13.6 101 114-278 168-268 (383)
69 TIGR00536 hemK_fam HemK family 99.3 6.3E-11 1.4E-15 114.3 13.2 62 115-179 116-177 (284)
70 PF05175 MTS: Methyltransferas 99.3 5.8E-11 1.3E-15 106.2 12.0 139 99-299 21-160 (170)
71 PRK14967 putative methyltransf 99.3 5.2E-11 1.1E-15 110.5 11.9 79 93-178 17-95 (223)
72 PLN02336 phosphoethanolamine N 99.2 2.6E-11 5.7E-16 123.7 10.6 102 115-275 39-140 (475)
73 TIGR02081 metW methionine bios 99.2 1.1E-10 2.3E-15 105.9 13.4 89 115-267 15-103 (194)
74 PRK09328 N5-glutamine S-adenos 99.2 9.7E-11 2.1E-15 110.2 13.3 82 94-179 89-170 (275)
75 PRK07402 precorrin-6B methylas 99.2 7E-11 1.5E-15 107.3 11.8 104 114-279 41-144 (196)
76 PLN02232 ubiquinone biosynthes 99.2 1.4E-11 3E-16 109.5 6.9 141 141-358 1-146 (160)
77 PRK00377 cbiT cobalt-precorrin 99.2 8.3E-11 1.8E-15 107.3 12.1 105 114-278 41-146 (198)
78 PRK04457 spermidine synthase; 99.2 1.7E-10 3.8E-15 110.8 14.8 117 113-282 66-182 (262)
79 PRK11805 N5-glutamine S-adenos 99.2 9E-11 2E-15 115.3 12.8 61 115-178 135-195 (307)
80 TIGR00091 tRNA (guanine-N(7)-) 99.2 6.5E-11 1.4E-15 108.0 10.0 110 115-277 18-132 (194)
81 PRK13942 protein-L-isoaspartat 99.2 1.7E-10 3.7E-15 107.0 12.1 99 115-278 78-177 (212)
82 COG2230 Cfa Cyclopropane fatty 99.2 1.5E-10 3.2E-15 113.5 12.0 103 115-277 74-176 (283)
83 TIGR00080 pimt protein-L-isoas 99.2 2.3E-10 5E-15 105.6 12.6 100 114-278 78-178 (215)
84 PRK13944 protein-L-isoaspartat 99.2 3.1E-10 6.7E-15 104.5 13.0 101 115-279 74-175 (205)
85 TIGR00406 prmA ribosomal prote 99.2 2.5E-10 5.3E-15 110.7 12.9 98 115-276 161-258 (288)
86 PRK14968 putative methyltransf 99.2 2.3E-10 5E-15 100.9 11.6 78 94-180 8-86 (188)
87 TIGR00438 rrmJ cell division p 99.2 5.4E-10 1.2E-14 100.9 14.1 138 86-282 3-151 (188)
88 cd02440 AdoMet_MTases S-adenos 99.2 2.7E-10 5.9E-15 86.7 10.3 103 116-276 1-103 (107)
89 PF03291 Pox_MCEL: mRNA cappin 99.2 2.8E-10 6.1E-15 113.4 13.0 193 113-365 62-271 (331)
90 COG4976 Predicted methyltransf 99.2 2.5E-11 5.4E-16 116.5 5.0 118 95-277 107-225 (287)
91 PRK11188 rrmJ 23S rRNA methylt 99.1 5.6E-10 1.2E-14 103.8 12.4 112 115-285 53-173 (209)
92 TIGR03704 PrmC_rel_meth putati 99.1 8.4E-10 1.8E-14 105.4 12.9 59 114-179 87-145 (251)
93 PRK14966 unknown domain/N5-glu 99.1 9.3E-10 2E-14 113.1 12.8 61 115-180 253-313 (423)
94 PRK00517 prmA ribosomal protei 99.1 5.8E-10 1.3E-14 105.7 10.3 43 114-157 120-162 (250)
95 KOG1541 Predicted protein carb 99.1 5.3E-10 1.2E-14 106.9 9.9 114 110-284 47-167 (270)
96 KOG4300 Predicted methyltransf 99.1 4.4E-10 9.5E-15 106.6 8.9 110 110-278 73-183 (252)
97 KOG3010 Methyltransferase [Gen 99.0 4E-10 8.7E-15 108.5 7.7 120 93-279 16-139 (261)
98 PRK00811 spermidine synthase; 99.0 9.5E-10 2.1E-14 106.7 9.9 113 112-277 75-191 (283)
99 TIGR01177 conserved hypothetic 99.0 2.1E-09 4.6E-14 105.7 12.3 108 115-279 184-296 (329)
100 PRK00312 pcm protein-L-isoaspa 99.0 2.8E-09 6.1E-14 97.8 12.2 98 114-278 79-176 (212)
101 PHA03411 putative methyltransf 99.0 1.5E-09 3.2E-14 106.4 10.8 57 115-180 66-122 (279)
102 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.8E-09 3.9E-14 110.0 11.4 107 115-275 124-233 (390)
103 PRK01544 bifunctional N5-gluta 99.0 1.5E-09 3.2E-14 113.4 11.0 62 114-178 139-200 (506)
104 KOG2361 Predicted methyltransf 99.0 3.9E-09 8.4E-14 101.8 12.5 179 97-357 53-235 (264)
105 PLN02781 Probable caffeoyl-CoA 99.0 3.6E-09 7.9E-14 100.0 12.1 126 92-276 51-177 (234)
106 COG4106 Tam Trans-aconitate me 99.0 9.5E-10 2.1E-14 104.9 7.8 105 109-278 26-130 (257)
107 KOG1271 Methyltransferases [Ge 99.0 1.2E-09 2.7E-14 102.0 8.3 122 99-275 53-179 (227)
108 COG2264 PrmA Ribosomal protein 99.0 2.8E-09 6.1E-14 105.3 10.8 108 99-275 150-261 (300)
109 PTZ00146 fibrillarin; Provisio 99.0 1.1E-08 2.4E-13 100.9 14.5 103 115-277 134-237 (293)
110 COG2890 HemK Methylase of poly 99.0 5.3E-09 1.1E-13 101.9 12.1 59 116-178 113-171 (280)
111 PRK10901 16S rRNA methyltransf 99.0 3.5E-09 7.6E-14 108.0 11.1 107 115-275 246-370 (427)
112 PRK13256 thiopurine S-methyltr 99.0 9.8E-09 2.1E-13 97.8 13.3 124 99-275 30-161 (226)
113 PF08003 Methyltransf_9: Prote 99.0 1.8E-08 3.8E-13 100.1 15.4 163 114-372 116-280 (315)
114 smart00650 rADc Ribosomal RNA 99.0 4.2E-09 9E-14 93.7 10.1 58 115-180 15-72 (169)
115 PLN02672 methionine S-methyltr 98.9 7.9E-09 1.7E-13 116.3 13.2 66 115-180 120-197 (1082)
116 TIGR00417 speE spermidine synt 98.9 5.6E-09 1.2E-13 100.2 10.4 113 112-277 71-186 (270)
117 COG2263 Predicted RNA methylas 98.9 3.6E-09 7.9E-14 98.8 8.5 75 99-180 32-106 (198)
118 PLN02366 spermidine synthase 98.9 7.4E-09 1.6E-13 102.4 10.7 113 112-276 90-205 (308)
119 PRK14903 16S rRNA methyltransf 98.9 9E-09 2E-13 105.6 11.6 110 115-278 239-367 (431)
120 PRK11783 rlmL 23S rRNA m(2)G24 98.9 8E-09 1.7E-13 111.7 11.7 112 115-279 540-658 (702)
121 KOG1975 mRNA cap methyltransfe 98.9 2.9E-08 6.3E-13 99.3 14.1 187 116-357 120-315 (389)
122 PF06325 PrmA: Ribosomal prote 98.9 5.9E-09 1.3E-13 102.7 8.8 108 100-275 150-257 (295)
123 PRK13943 protein-L-isoaspartat 98.8 2.3E-08 4.9E-13 99.6 11.9 61 115-179 82-143 (322)
124 PF07021 MetW: Methionine bios 98.8 3E-09 6.5E-14 99.3 5.2 146 115-358 15-166 (193)
125 COG2242 CobL Precorrin-6B meth 98.8 3.2E-08 6.9E-13 92.1 11.9 119 94-278 18-136 (187)
126 PRK14904 16S rRNA methyltransf 98.8 2.1E-08 4.5E-13 102.8 11.3 108 115-278 252-378 (445)
127 PRK01581 speE spermidine synth 98.8 1.7E-08 3.6E-13 102.5 10.1 142 86-277 121-268 (374)
128 TIGR00563 rsmB ribosomal RNA s 98.8 3.2E-08 7E-13 100.9 12.2 111 115-277 240-368 (426)
129 PF06080 DUF938: Protein of un 98.8 2.8E-08 6.1E-13 93.6 10.6 178 100-364 13-195 (204)
130 PF05724 TPMT: Thiopurine S-me 98.8 2.4E-08 5.2E-13 94.1 10.0 122 99-275 24-153 (218)
131 PRK14902 16S rRNA methyltransf 98.8 3.9E-08 8.4E-13 100.6 12.0 62 115-180 252-314 (444)
132 PRK15128 23S rRNA m(5)C1962 me 98.8 3.7E-08 7.9E-13 100.4 11.7 110 115-276 222-338 (396)
133 COG4123 Predicted O-methyltran 98.8 2.8E-08 6E-13 96.1 9.9 64 114-180 45-108 (248)
134 PRK03522 rumB 23S rRNA methylu 98.8 1.2E-07 2.5E-12 93.1 14.4 61 114-180 174-234 (315)
135 PF00891 Methyltransf_2: O-met 98.8 4.6E-08 9.9E-13 91.3 11.0 98 114-278 101-201 (241)
136 KOG2899 Predicted methyltransf 98.8 3.4E-08 7.3E-13 95.7 10.0 176 83-277 32-209 (288)
137 TIGR00446 nop2p NOL1/NOP2/sun 98.8 3.5E-08 7.5E-13 94.6 10.1 91 83-180 44-135 (264)
138 PRK03612 spermidine synthase; 98.7 3.6E-08 7.7E-13 103.4 10.0 115 112-277 296-415 (521)
139 PLN02476 O-methyltransferase 98.7 8.1E-08 1.8E-12 94.1 10.8 110 112-276 117-227 (278)
140 PRK14901 16S rRNA methyltransf 98.7 6.1E-08 1.3E-12 99.1 10.3 111 115-276 254-383 (434)
141 PHA03412 putative methyltransf 98.7 1E-07 2.2E-12 91.9 10.5 57 115-180 51-110 (241)
142 PRK13168 rumA 23S rRNA m(5)U19 98.7 5.5E-07 1.2E-11 92.4 15.4 60 114-179 298-357 (443)
143 PF07942 N2227: N2227-like pro 98.7 6.8E-07 1.5E-11 87.4 15.2 187 99-356 38-239 (270)
144 PF01596 Methyltransf_3: O-met 98.6 9E-08 2E-12 89.6 7.6 119 99-276 35-154 (205)
145 PRK14896 ksgA 16S ribosomal RN 98.6 2.2E-07 4.7E-12 88.8 9.4 75 97-180 14-88 (258)
146 PRK00274 ksgA 16S ribosomal RN 98.6 1.9E-07 4.2E-12 89.9 9.1 59 113-180 42-100 (272)
147 PRK10611 chemotaxis methyltran 98.6 2.1E-07 4.5E-12 91.6 9.3 112 114-277 116-262 (287)
148 PRK04148 hypothetical protein; 98.6 8.1E-07 1.8E-11 78.8 11.5 85 114-267 17-102 (134)
149 COG2813 RsmC 16S RNA G1207 met 98.6 1.3E-06 2.9E-11 86.5 14.1 121 116-299 161-286 (300)
150 PF05185 PRMT5: PRMT5 arginine 98.5 4.4E-07 9.6E-12 94.1 10.4 131 82-276 161-296 (448)
151 PTZ00338 dimethyladenosine tra 98.5 3.6E-07 7.9E-12 89.8 9.0 79 96-180 20-98 (294)
152 PLN02823 spermine synthase 98.5 5.3E-07 1.1E-11 90.4 10.2 112 112-277 102-220 (336)
153 COG0500 SmtA SAM-dependent met 98.5 1.9E-06 4.1E-11 65.6 10.9 101 117-279 52-157 (257)
154 TIGR02085 meth_trns_rumB 23S r 98.5 4.4E-07 9.5E-12 91.4 9.6 60 115-180 235-294 (374)
155 PLN02589 caffeoyl-CoA O-methyl 98.5 6.8E-07 1.5E-11 86.1 10.1 124 95-276 65-189 (247)
156 TIGR00095 RNA methyltransferas 98.4 1.1E-06 2.4E-11 80.8 10.0 61 115-179 51-111 (189)
157 PF12147 Methyltransf_20: Puta 98.4 2.9E-06 6.4E-11 84.1 13.3 161 113-360 135-299 (311)
158 TIGR00478 tly hemolysin TlyA f 98.4 2.1E-06 4.5E-11 81.9 10.8 57 115-181 77-134 (228)
159 TIGR00755 ksgA dimethyladenosi 98.4 1.9E-06 4E-11 81.9 10.5 73 99-180 16-88 (253)
160 KOG3420 Predicted RNA methylas 98.4 5.6E-07 1.2E-11 81.9 6.4 88 86-180 22-109 (185)
161 PRK10909 rsmD 16S rRNA m(2)G96 98.4 2.4E-06 5.2E-11 79.7 10.8 59 115-178 55-113 (199)
162 COG1041 Predicted DNA modifica 98.4 1.8E-06 4E-11 87.0 10.1 59 116-180 200-259 (347)
163 COG4122 Predicted O-methyltran 98.4 2.8E-06 6E-11 80.9 10.6 119 99-280 49-171 (219)
164 TIGR00479 rumA 23S rRNA (uraci 98.4 3.3E-06 7.1E-11 86.0 11.8 58 115-178 294-351 (431)
165 PF01739 CheR: CheR methyltran 98.3 9E-07 1.9E-11 82.5 6.5 112 113-277 31-175 (196)
166 COG2519 GCD14 tRNA(1-methylade 98.3 2.6E-06 5.5E-11 82.8 9.6 126 82-275 66-193 (256)
167 PF01135 PCMT: Protein-L-isoas 98.3 2E-06 4.3E-11 80.9 8.0 60 115-178 74-134 (209)
168 PF02390 Methyltransf_4: Putat 98.3 3.2E-06 7E-11 78.3 9.0 107 116-275 20-131 (195)
169 KOG2904 Predicted methyltransf 98.3 4.3E-06 9.3E-11 82.5 10.1 60 114-176 149-208 (328)
170 PF10672 Methyltrans_SAM: S-ad 98.2 3.8E-06 8.2E-11 82.8 8.5 126 102-281 115-242 (286)
171 COG1092 Predicted SAM-dependen 98.2 6E-06 1.3E-10 84.7 10.1 113 116-278 220-337 (393)
172 PF10294 Methyltransf_16: Puta 98.2 1.6E-05 3.5E-10 72.0 11.2 110 114-276 46-155 (173)
173 PF01170 UPF0020: Putative RNA 98.2 7.8E-06 1.7E-10 74.6 9.2 63 115-180 30-101 (179)
174 PF05891 Methyltransf_PK: AdoM 98.2 2.7E-06 5.8E-11 81.1 5.5 119 99-275 40-159 (218)
175 PF05148 Methyltransf_8: Hypot 98.1 7.3E-06 1.6E-10 78.0 8.1 116 82-278 43-160 (219)
176 PF08123 DOT1: Histone methyla 98.1 2.2E-05 4.8E-10 73.8 11.3 129 92-275 20-156 (205)
177 PRK04338 N(2),N(2)-dimethylgua 98.1 7.6E-06 1.6E-10 83.3 8.2 101 115-278 59-162 (382)
178 COG0421 SpeE Spermidine syntha 98.1 1.3E-05 2.8E-10 78.9 9.5 111 113-276 76-189 (282)
179 COG2518 Pcm Protein-L-isoaspar 98.1 3.4E-05 7.4E-10 73.2 11.6 98 114-278 73-170 (209)
180 COG1352 CheR Methylase of chem 98.1 2.6E-05 5.6E-10 76.3 10.6 133 113-277 96-241 (268)
181 PF03602 Cons_hypoth95: Conser 98.0 1.2E-05 2.6E-10 74.0 7.4 62 115-180 44-105 (183)
182 TIGR00308 TRM1 tRNA(guanine-26 98.0 1.9E-05 4.1E-10 80.4 9.1 121 92-275 22-145 (374)
183 PF01564 Spermine_synth: Sperm 98.0 9.3E-06 2E-10 77.8 5.8 114 113-277 76-191 (246)
184 PRK00050 16S rRNA m(4)C1402 me 98.0 2.7E-05 5.8E-10 77.2 9.1 60 115-180 21-81 (296)
185 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.0 5E-05 1.1E-09 73.9 10.4 138 110-275 53-197 (256)
186 PRK11727 23S rRNA mA1618 methy 98.0 2.6E-05 5.6E-10 78.0 8.6 58 114-173 115-172 (321)
187 COG0030 KsgA Dimethyladenosine 97.9 3E-05 6.5E-10 75.7 8.0 96 92-198 10-105 (259)
188 TIGR02143 trmA_only tRNA (urac 97.9 2.9E-05 6.4E-10 77.9 8.0 59 116-180 200-258 (353)
189 KOG3045 Predicted RNA methylas 97.9 5.5E-05 1.2E-09 74.5 9.5 114 82-278 151-266 (325)
190 KOG1499 Protein arginine N-met 97.9 2.7E-05 5.9E-10 78.6 7.4 104 115-276 62-166 (346)
191 KOG1500 Protein arginine N-met 97.9 0.0001 2.2E-09 75.0 11.0 138 82-279 141-287 (517)
192 PRK05031 tRNA (uracil-5-)-meth 97.9 2.6E-05 5.7E-10 78.4 6.7 60 115-180 208-267 (362)
193 KOG1663 O-methyltransferase [S 97.8 0.00015 3.3E-09 69.9 10.1 127 94-280 58-188 (237)
194 PF09445 Methyltransf_15: RNA 97.8 3.8E-05 8.3E-10 70.2 5.5 60 116-180 2-61 (163)
195 PRK00536 speE spermidine synth 97.8 0.00014 3E-09 71.0 9.7 101 111-276 70-170 (262)
196 COG0220 Predicted S-adenosylme 97.8 0.00012 2.6E-09 70.0 9.1 108 116-277 51-166 (227)
197 KOG0820 Ribosomal RNA adenine 97.8 0.0001 2.2E-09 73.0 8.6 74 101-180 47-120 (315)
198 PF01728 FtsJ: FtsJ-like methy 97.7 7.8E-05 1.7E-09 66.7 6.5 114 114-283 24-145 (181)
199 COG2265 TrmA SAM-dependent met 97.7 0.00017 3.6E-09 74.9 8.8 69 106-180 286-354 (432)
200 PF02475 Met_10: Met-10+ like- 97.6 0.00013 2.8E-09 68.5 6.8 62 115-180 103-165 (200)
201 PF08704 GCD14: tRNA methyltra 97.6 0.00017 3.7E-09 69.8 7.7 79 95-180 26-105 (247)
202 PF02384 N6_Mtase: N-6 DNA Met 97.6 0.00033 7.2E-09 67.9 9.6 78 101-180 34-118 (311)
203 PF05958 tRNA_U5-meth_tr: tRNA 97.6 9.5E-05 2.1E-09 74.3 6.0 74 99-179 183-256 (352)
204 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.00045 9.7E-09 75.3 10.3 63 115-180 192-296 (702)
205 KOG2940 Predicted methyltransf 97.5 0.00013 2.9E-09 71.0 4.7 106 116-283 75-180 (325)
206 PF04672 Methyltransf_19: S-ad 97.4 0.00048 1E-08 67.7 8.0 120 114-278 69-191 (267)
207 COG0116 Predicted N6-adenine-s 97.4 0.00061 1.3E-08 69.8 8.6 63 115-180 193-294 (381)
208 KOG3178 Hydroxyindole-O-methyl 97.4 0.0016 3.6E-08 65.9 11.4 99 114-278 178-277 (342)
209 PRK01544 bifunctional N5-gluta 97.4 0.00063 1.4E-08 71.7 8.7 109 115-277 349-464 (506)
210 PRK11933 yebU rRNA (cytosine-C 97.4 0.0015 3.2E-08 68.6 11.3 63 114-180 114-177 (470)
211 TIGR01444 fkbM_fam methyltrans 97.3 0.00047 1E-08 58.7 6.0 60 117-180 2-61 (143)
212 KOG2730 Methylase [General fun 97.3 0.00018 3.9E-09 69.5 3.6 63 113-180 94-156 (263)
213 COG0742 N6-adenine-specific me 97.3 0.0011 2.4E-08 62.1 8.8 59 115-177 45-103 (187)
214 PF13679 Methyltransf_32: Meth 97.3 0.00098 2.1E-08 58.2 7.3 64 112-176 24-91 (141)
215 PF03141 Methyltransf_29: Puta 97.2 0.00022 4.7E-09 75.2 3.5 117 94-277 95-219 (506)
216 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0012 2.6E-08 63.4 8.1 74 99-181 17-90 (262)
217 COG4301 Uncharacterized conser 97.1 0.017 3.6E-07 57.1 15.1 218 85-359 45-308 (321)
218 KOG2798 Putative trehalase [Ca 97.1 0.0018 3.8E-08 65.4 8.3 134 114-275 151-294 (369)
219 KOG1661 Protein-L-isoaspartate 97.1 0.0033 7.3E-08 60.4 9.4 66 115-180 84-157 (237)
220 PF05219 DREV: DREV methyltran 97.1 0.0024 5.1E-08 62.8 8.5 94 114-277 95-188 (265)
221 COG0293 FtsJ 23S rRNA methylas 97.0 0.0076 1.7E-07 57.3 11.4 51 115-180 47-98 (205)
222 COG3963 Phospholipid N-methylt 96.9 0.0076 1.6E-07 56.4 10.2 111 112-279 47-158 (194)
223 KOG3191 Predicted N6-DNA-methy 96.8 0.0076 1.6E-07 57.0 9.6 63 110-177 40-103 (209)
224 PF13578 Methyltransf_24: Meth 96.8 0.0012 2.6E-08 54.0 3.7 98 118-276 1-104 (106)
225 TIGR02987 met_A_Alw26 type II 96.8 0.0031 6.8E-08 66.2 7.5 64 94-157 9-83 (524)
226 KOG2187 tRNA uracil-5-methyltr 96.7 0.0021 4.6E-08 68.1 5.2 80 84-175 358-439 (534)
227 COG2520 Predicted methyltransf 96.7 0.0055 1.2E-07 62.2 7.8 62 115-180 190-251 (341)
228 PF09243 Rsm22: Mitochondrial 96.6 0.009 2E-07 58.2 8.6 45 111-157 31-78 (274)
229 cd00315 Cyt_C5_DNA_methylase C 96.5 0.005 1.1E-07 59.8 6.1 54 116-180 2-55 (275)
230 KOG2352 Predicted spermine/spe 96.5 0.017 3.6E-07 61.0 10.2 105 116-277 51-161 (482)
231 PF03059 NAS: Nicotianamine sy 96.5 0.022 4.8E-07 56.3 10.5 130 83-276 98-229 (276)
232 KOG1269 SAM-dependent methyltr 96.1 0.014 3E-07 59.7 7.1 101 116-275 113-213 (364)
233 PF01555 N6_N4_Mtase: DNA meth 96.1 0.015 3.2E-07 52.2 6.4 53 99-155 179-231 (231)
234 PF11968 DUF3321: Putative met 96.0 0.015 3.2E-07 55.8 6.3 38 233-272 102-139 (219)
235 PRK10742 putative methyltransf 96.0 0.017 3.7E-07 56.4 6.6 63 116-180 91-158 (250)
236 COG4076 Predicted RNA methylas 95.9 0.018 3.9E-07 55.0 6.2 99 115-275 34-133 (252)
237 TIGR00006 S-adenosyl-methyltra 95.8 0.043 9.3E-07 55.0 8.7 61 115-180 22-82 (305)
238 PF04989 CmcI: Cephalosporin h 95.4 0.073 1.6E-06 50.7 8.4 62 113-180 32-98 (206)
239 PF06859 Bin3: Bicoid-interact 95.4 0.0076 1.7E-07 52.3 1.7 42 235-278 1-45 (110)
240 KOG1331 Predicted methyltransf 95.2 0.024 5.1E-07 56.5 4.6 128 82-278 13-144 (293)
241 TIGR00675 dcm DNA-methyltransf 95.0 0.11 2.3E-06 51.6 8.7 53 117-180 1-53 (315)
242 PRK11760 putative 23S rRNA C24 95.0 0.079 1.7E-06 54.2 7.7 51 115-178 213-263 (357)
243 PRK11524 putative methyltransf 94.9 0.072 1.6E-06 51.9 6.9 55 99-157 196-250 (284)
244 COG4262 Predicted spermidine s 94.8 0.16 3.5E-06 52.8 9.3 110 114-277 290-407 (508)
245 PF06962 rRNA_methylase: Putat 94.7 0.13 2.8E-06 46.3 7.4 89 139-283 1-98 (140)
246 PF00145 DNA_methylase: C-5 cy 94.7 0.046 1E-06 52.0 4.8 53 116-180 2-54 (335)
247 PF07757 AdoMet_MTase: Predict 94.6 0.055 1.2E-06 47.1 4.8 49 96-146 41-89 (112)
248 PRK13699 putative methylase; P 94.5 0.1 2.2E-06 49.7 6.9 41 115-157 165-205 (227)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.4 0.27 5.7E-06 48.3 9.5 93 81-180 56-149 (283)
250 PF01795 Methyltransf_5: MraW 94.2 0.17 3.7E-06 50.9 7.8 61 115-180 22-82 (310)
251 COG1189 Predicted rRNA methyla 93.8 0.47 1E-05 46.5 9.7 98 115-278 81-179 (245)
252 COG3897 Predicted methyltransf 93.8 0.14 3E-06 49.1 6.0 74 94-177 64-137 (218)
253 COG0144 Sun tRNA and rRNA cyto 93.7 0.57 1.2E-05 47.6 10.7 154 86-277 132-288 (355)
254 PF11599 AviRa: RRNA methyltra 93.7 0.081 1.7E-06 51.3 4.2 54 102-156 41-96 (246)
255 COG0270 Dcm Site-specific DNA 93.2 0.38 8.3E-06 47.9 8.4 102 115-276 4-115 (328)
256 PF10017 Methyltransf_33: Hist 93.1 0.77 1.7E-05 40.0 9.2 25 336-360 94-118 (127)
257 TIGR00027 mthyl_TIGR00027 meth 92.9 1.3 2.8E-05 43.0 11.3 133 99-280 68-200 (260)
258 COG2521 Predicted archaeal met 92.5 0.19 4.2E-06 49.4 5.0 59 115-177 136-195 (287)
259 PF01861 DUF43: Protein of unk 92.3 1.7 3.7E-05 42.6 11.2 153 78-292 11-165 (243)
260 PRK10458 DNA cytosine methylas 92.3 0.34 7.4E-06 51.2 6.9 59 115-180 89-147 (467)
261 PF02005 TRM: N2,N2-dimethylgu 92.1 0.4 8.7E-06 49.3 7.0 125 92-277 26-157 (377)
262 PF01269 Fibrillarin: Fibrilla 91.9 1.3 2.8E-05 43.1 9.8 100 115-278 75-179 (229)
263 KOG2915 tRNA(1-methyladenosine 91.8 0.67 1.5E-05 46.5 7.9 79 95-180 91-170 (314)
264 COG3315 O-Methyltransferase in 91.3 2.5 5.3E-05 42.2 11.4 183 99-357 79-262 (297)
265 PF04816 DUF633: Family of unk 91.3 0.38 8.2E-06 45.5 5.4 60 117-179 1-60 (205)
266 KOG2671 Putative RNA methylase 91.0 0.12 2.7E-06 53.1 2.0 84 92-181 190-279 (421)
267 KOG3987 Uncharacterized conser 91.0 0.041 8.9E-07 53.3 -1.4 96 112-277 111-207 (288)
268 KOG4589 Cell division protein 91.0 1.7 3.8E-05 41.7 9.4 52 114-180 70-123 (232)
269 PF07091 FmrO: Ribosomal RNA m 90.9 0.41 9E-06 47.0 5.4 70 101-176 92-163 (251)
270 PF02527 GidB: rRNA small subu 90.9 0.52 1.1E-05 43.8 5.8 96 116-275 51-146 (184)
271 COG1064 AdhP Zn-dependent alco 90.7 0.52 1.1E-05 48.1 6.1 35 119-156 174-209 (339)
272 PF05971 Methyltransf_10: Prot 89.8 0.65 1.4E-05 46.6 5.8 59 115-175 104-162 (299)
273 PLN02668 indole-3-acetate carb 89.7 2.1 4.5E-05 44.5 9.5 141 114-280 64-240 (386)
274 KOG1709 Guanidinoacetate methy 87.5 4.1 8.9E-05 40.0 9.3 98 116-275 104-204 (271)
275 PF03492 Methyltransf_7: SAM d 87.5 1.2 2.7E-05 44.8 6.1 136 111-279 14-185 (334)
276 PF02254 TrkA_N: TrkA-N domain 87.3 3.6 7.8E-05 33.7 7.8 47 122-180 4-53 (116)
277 PF00107 ADH_zinc_N: Zinc-bind 86.2 4.7 0.0001 33.4 8.0 33 123-156 1-33 (130)
278 KOG0822 Protein kinase inhibit 85.9 2.4 5.2E-05 46.1 7.4 130 81-278 342-479 (649)
279 COG1063 Tdh Threonine dehydrog 85.7 2.9 6.2E-05 41.9 7.6 42 116-157 171-213 (350)
280 PF02086 MethyltransfD12: D12 85.7 0.79 1.7E-05 42.8 3.4 39 114-154 21-59 (260)
281 COG1568 Predicted methyltransf 85.2 1.7 3.7E-05 43.9 5.6 152 77-289 118-270 (354)
282 PF05711 TylF: Macrocin-O-meth 85.1 4.9 0.00011 39.3 8.7 39 237-280 177-215 (248)
283 TIGR00824 EIIA-man PTS system, 84.9 3.8 8.3E-05 35.0 7.0 38 250-287 39-77 (116)
284 PRK12826 3-ketoacyl-(acyl-carr 84.5 13 0.00029 33.5 10.8 57 116-180 8-68 (251)
285 PRK07576 short chain dehydroge 84.1 6.3 0.00014 37.0 8.7 47 127-180 25-71 (264)
286 cd08283 FDH_like_1 Glutathione 84.0 6.5 0.00014 39.3 9.2 42 115-156 186-228 (386)
287 KOG1253 tRNA methyltransferase 84.0 1.1 2.5E-05 47.9 4.0 46 112-157 108-154 (525)
288 COG0275 Predicted S-adenosylme 82.8 2.3 5E-05 43.1 5.4 61 115-180 25-86 (314)
289 KOG0024 Sorbitol dehydrogenase 82.5 9.2 0.0002 39.4 9.6 41 115-155 171-212 (354)
290 KOG1099 SAM-dependent methyltr 80.4 8.1 0.00018 38.4 8.0 139 81-281 6-167 (294)
291 PRK08265 short chain dehydroge 80.3 17 0.00038 33.8 10.1 54 117-180 9-65 (261)
292 PTZ00357 methyltransferase; Pr 80.2 14 0.0003 41.9 10.5 65 115-180 702-776 (1072)
293 PRK08339 short chain dehydroge 79.8 15 0.00032 34.6 9.6 59 116-180 10-71 (263)
294 PRK12384 sorbitol-6-phosphate 79.1 18 0.0004 33.3 9.8 49 127-180 18-66 (259)
295 PRK06953 short chain dehydroge 78.7 17 0.00036 32.9 9.2 41 127-180 17-57 (222)
296 KOG2920 Predicted methyltransf 77.9 1.8 3.8E-05 43.3 2.8 63 85-151 86-153 (282)
297 cd08254 hydroxyacyl_CoA_DH 6-h 77.9 18 0.0004 34.2 9.6 41 115-156 167-208 (338)
298 PRK09424 pntA NAD(P) transhydr 77.8 15 0.00032 39.6 9.8 44 112-156 163-207 (509)
299 COG0863 DNA modification methy 77.0 3.8 8.3E-05 39.0 4.7 42 115-158 224-265 (302)
300 COG0357 GidB Predicted S-adeno 76.3 7.8 0.00017 37.3 6.5 92 82-180 22-130 (215)
301 PRK07677 short chain dehydroge 76.3 22 0.00048 32.7 9.4 47 127-180 17-63 (252)
302 PF02636 Methyltransf_28: Puta 76.2 3.7 8.1E-05 39.1 4.4 59 99-157 4-70 (252)
303 PRK09072 short chain dehydroge 76.1 30 0.00064 32.1 10.3 56 117-180 8-66 (263)
304 PRK07326 short chain dehydroge 75.7 18 0.00039 32.7 8.5 55 117-180 9-67 (237)
305 KOG2793 Putative N2,N2-dimethy 75.1 11 0.00023 37.2 7.2 38 113-151 86-123 (248)
306 KOG4058 Uncharacterized conser 74.3 4.8 0.0001 37.6 4.4 65 110-178 69-133 (199)
307 PRK07231 fabG 3-ketoacyl-(acyl 74.3 37 0.0008 30.7 10.2 46 127-180 21-66 (251)
308 cd05188 MDR Medium chain reduc 74.2 35 0.00075 30.8 10.0 42 114-156 135-177 (271)
309 PRK07890 short chain dehydroge 74.2 20 0.00043 32.9 8.5 47 127-180 21-67 (258)
310 COG2384 Predicted SAM-dependen 74.0 17 0.00037 35.5 8.2 61 117-180 20-80 (226)
311 KOG1501 Arginine N-methyltrans 74.0 3.4 7.4E-05 44.2 3.7 41 115-156 68-108 (636)
312 PRK05786 fabG 3-ketoacyl-(acyl 73.6 32 0.0007 31.0 9.6 57 116-180 7-66 (238)
313 PRK09186 flagellin modificatio 73.3 34 0.00073 31.3 9.8 49 127-180 20-68 (256)
314 PRK08267 short chain dehydroge 73.1 40 0.00087 31.1 10.3 55 117-180 4-61 (260)
315 KOG2078 tRNA modification enzy 73.1 3.3 7E-05 44.0 3.3 61 115-180 251-312 (495)
316 PRK08589 short chain dehydroge 73.0 28 0.00061 32.7 9.4 57 116-180 8-67 (272)
317 PRK15181 Vi polysaccharide bio 72.7 12 0.00026 36.9 7.1 51 128-180 32-82 (348)
318 COG3510 CmcI Cephalosporin hyd 72.7 48 0.001 32.3 10.7 60 113-181 69-132 (237)
319 PRK07904 short chain dehydroge 72.5 27 0.00059 32.7 9.1 61 114-180 8-73 (253)
320 PRK06200 2,3-dihydroxy-2,3-dih 71.9 32 0.00069 31.9 9.4 55 116-180 8-65 (263)
321 COG5459 Predicted rRNA methyla 71.6 5.4 0.00012 41.8 4.4 48 233-282 180-229 (484)
322 PRK12429 3-hydroxybutyrate deh 71.3 37 0.00079 30.9 9.5 52 122-180 11-66 (258)
323 PF03610 EIIA-man: PTS system 70.7 12 0.00025 31.5 5.7 46 250-295 38-84 (116)
324 PRK03659 glutathione-regulated 69.9 22 0.00049 38.5 8.9 49 121-180 405-455 (601)
325 PRK05650 short chain dehydroge 69.7 39 0.00085 31.5 9.5 47 127-180 16-62 (270)
326 PRK08177 short chain dehydroge 69.7 32 0.00069 31.2 8.7 42 127-180 17-58 (225)
327 PRK12939 short chain dehydroge 69.6 29 0.00063 31.4 8.4 44 130-180 26-69 (250)
328 COG1867 TRM1 N2,N2-dimethylgua 69.1 7.8 0.00017 40.3 5.0 45 114-158 53-97 (380)
329 PRK12823 benD 1,6-dihydroxycyc 69.1 42 0.0009 30.9 9.5 57 116-180 10-69 (260)
330 PRK05867 short chain dehydroge 68.8 33 0.00072 31.6 8.7 58 116-180 11-71 (253)
331 PRK06482 short chain dehydroge 68.8 54 0.0012 30.6 10.3 54 117-180 5-61 (276)
332 PRK06182 short chain dehydroge 68.6 36 0.00077 31.9 9.0 51 117-180 6-59 (273)
333 PRK09880 L-idonate 5-dehydroge 68.3 36 0.00079 33.2 9.3 41 116-156 172-213 (343)
334 PRK09496 trkA potassium transp 67.7 11 0.00024 38.2 5.8 55 115-180 232-288 (453)
335 PRK08324 short chain dehydroge 66.8 37 0.0008 37.2 9.9 57 116-180 424-483 (681)
336 PRK10178 D-alanyl-D-alanine di 65.3 40 0.00087 31.8 8.5 111 244-359 37-164 (184)
337 PRK06101 short chain dehydroge 65.1 76 0.0016 29.1 10.3 43 127-180 17-59 (240)
338 cd00006 PTS_IIA_man PTS_IIA, P 64.4 22 0.00048 30.3 6.1 35 251-285 39-74 (122)
339 PRK08085 gluconate 5-dehydroge 63.7 81 0.0018 29.0 10.3 57 117-180 12-71 (254)
340 PRK07109 short chain dehydroge 63.6 52 0.0011 32.5 9.5 57 117-180 11-70 (334)
341 PRK08628 short chain dehydroge 63.4 71 0.0015 29.3 9.8 46 127-180 23-68 (258)
342 PRK06181 short chain dehydroge 63.3 61 0.0013 29.9 9.4 44 130-180 20-63 (263)
343 PRK10538 malonic semialdehyde 63.2 65 0.0014 29.6 9.5 44 127-180 16-59 (248)
344 PRK15088 PTS system mannose-sp 63.0 25 0.00055 35.6 7.2 38 250-287 40-78 (322)
345 PRK08643 acetoin reductase; Va 62.6 81 0.0018 28.9 10.0 47 127-180 18-64 (256)
346 PRK09496 trkA potassium transp 62.5 52 0.0011 33.4 9.5 48 121-180 5-56 (453)
347 PRK05872 short chain dehydroge 61.9 83 0.0018 30.2 10.3 57 116-180 11-70 (296)
348 PF02153 PDH: Prephenate dehyd 61.6 38 0.00083 32.5 7.9 31 127-157 1-31 (258)
349 PRK06940 short chain dehydroge 61.4 54 0.0012 31.1 8.8 51 123-180 12-62 (275)
350 PRK05717 oxidoreductase; Valid 61.1 68 0.0015 29.6 9.3 44 127-180 26-69 (255)
351 PRK06079 enoyl-(acyl carrier p 60.8 84 0.0018 29.2 9.9 45 126-180 24-68 (252)
352 PRK07806 short chain dehydroge 60.6 1E+02 0.0022 28.0 10.3 58 116-180 8-69 (248)
353 PF11899 DUF3419: Protein of u 60.5 11 0.00023 39.1 4.2 42 233-277 293-334 (380)
354 PRK05693 short chain dehydroge 60.5 73 0.0016 29.8 9.5 41 127-180 17-57 (274)
355 PRK05855 short chain dehydroge 60.2 56 0.0012 33.6 9.3 47 127-180 331-377 (582)
356 PRK07417 arogenate dehydrogena 60.0 41 0.00089 32.5 7.9 35 120-156 6-42 (279)
357 TIGR02415 23BDH acetoin reduct 59.8 88 0.0019 28.5 9.7 47 127-180 16-62 (254)
358 PRK03562 glutathione-regulated 59.8 58 0.0012 35.7 9.7 46 122-180 406-455 (621)
359 PF04072 LCM: Leucine carboxyl 59.2 22 0.00048 32.3 5.6 65 116-182 81-145 (183)
360 PRK09242 tropinone reductase; 58.8 99 0.0021 28.4 9.9 60 116-180 11-73 (257)
361 PRK01747 mnmC bifunctional tRN 58.8 42 0.00091 36.5 8.5 37 235-275 166-204 (662)
362 PRK10669 putative cation:proto 58.8 20 0.00044 38.2 6.0 48 122-180 423-472 (558)
363 PRK07832 short chain dehydroge 58.6 95 0.0021 29.0 9.9 48 127-180 16-63 (272)
364 PF03446 NAD_binding_2: NAD bi 58.5 28 0.0006 30.9 6.0 37 236-280 58-96 (163)
365 PRK06180 short chain dehydroge 58.4 67 0.0014 30.2 8.9 54 117-180 7-63 (277)
366 PRK06124 gluconate 5-dehydroge 58.3 76 0.0016 29.1 9.0 57 116-180 13-73 (256)
367 PRK07502 cyclohexadienyl dehyd 58.2 54 0.0012 32.0 8.4 39 117-155 9-49 (307)
368 PRK06701 short chain dehydroge 57.9 54 0.0012 31.5 8.3 58 116-180 48-109 (290)
369 PRK06128 oxidoreductase; Provi 57.7 68 0.0015 30.7 8.9 58 116-180 57-119 (300)
370 PRK07533 enoyl-(acyl carrier p 56.6 1.2E+02 0.0025 28.4 10.1 57 116-180 12-73 (258)
371 PRK06179 short chain dehydroge 56.5 44 0.00095 31.0 7.2 49 117-180 7-58 (270)
372 TIGR02632 RhaD_aldol-ADH rhamn 56.3 79 0.0017 34.9 10.1 60 116-180 416-478 (676)
373 COG1889 NOP1 Fibrillarin-like 56.0 82 0.0018 30.9 8.9 97 115-275 78-178 (231)
374 PRK06603 enoyl-(acyl carrier p 55.9 1.3E+02 0.0028 28.2 10.3 57 116-180 10-71 (260)
375 PRK06194 hypothetical protein; 55.4 38 0.00083 31.7 6.7 47 127-180 22-68 (287)
376 cd08232 idonate-5-DH L-idonate 55.2 58 0.0012 31.3 8.0 42 115-156 167-209 (339)
377 KOG3201 Uncharacterized conser 55.1 85 0.0018 29.9 8.6 37 115-151 31-68 (201)
378 KOG3115 Methyltransferase-like 55.0 12 0.00026 36.6 3.2 61 116-176 63-126 (249)
379 TIGR00561 pntA NAD(P) transhyd 54.8 49 0.0011 35.8 8.0 42 113-155 163-205 (511)
380 PRK06484 short chain dehydroge 54.7 1.2E+02 0.0026 31.3 10.7 54 117-180 272-328 (520)
381 PF04445 SAM_MT: Putative SAM- 54.5 22 0.00049 34.7 5.0 63 116-180 78-145 (234)
382 cd05278 FDH_like Formaldehyde 54.2 1.1E+02 0.0023 29.4 9.7 42 115-156 169-211 (347)
383 PRK06113 7-alpha-hydroxysteroi 54.1 1E+02 0.0022 28.4 9.2 58 116-180 13-73 (255)
384 PRK08217 fabG 3-ketoacyl-(acyl 53.5 44 0.00096 30.2 6.6 57 117-180 8-67 (253)
385 TIGR01832 kduD 2-deoxy-D-gluco 53.2 1.3E+02 0.0027 27.4 9.5 56 116-180 7-65 (248)
386 PLN02253 xanthoxin dehydrogena 53.1 47 0.001 31.1 6.8 46 127-180 34-79 (280)
387 PRK06483 dihydromonapterin red 52.8 1.6E+02 0.0034 26.7 10.1 53 116-180 4-59 (236)
388 PRK07831 short chain dehydroge 52.4 52 0.0011 30.5 7.0 50 126-180 33-82 (262)
389 COG1565 Uncharacterized conser 52.1 14 0.0003 38.5 3.3 57 99-156 64-128 (370)
390 PLN03209 translocon at the inn 52.0 87 0.0019 34.5 9.4 50 129-180 98-151 (576)
391 PRK13699 putative methylase; P 51.9 20 0.00042 34.3 4.1 21 254-275 50-70 (227)
392 PRK06138 short chain dehydroge 51.4 1.1E+02 0.0025 27.6 8.9 57 116-180 7-66 (252)
393 PRK07454 short chain dehydroge 51.3 56 0.0012 29.7 6.9 58 116-180 8-68 (241)
394 PRK08594 enoyl-(acyl carrier p 51.1 1.6E+02 0.0034 27.7 10.0 56 116-180 9-72 (257)
395 PRK11908 NAD-dependent epimera 50.8 85 0.0018 30.6 8.5 46 123-178 9-57 (347)
396 TIGR03451 mycoS_dep_FDH mycoth 50.4 1.3E+02 0.0029 29.5 9.8 41 116-156 179-220 (358)
397 PRK07523 gluconate 5-dehydroge 50.0 54 0.0012 30.1 6.7 57 116-180 12-72 (255)
398 PRK08340 glucose-1-dehydrogena 49.5 52 0.0011 30.5 6.5 46 127-180 16-61 (259)
399 COG1748 LYS9 Saccharopine dehy 49.4 1.1E+02 0.0023 32.2 9.3 56 116-180 3-60 (389)
400 COG2893 ManX Phosphotransferas 49.1 43 0.00092 30.2 5.6 88 253-362 43-133 (143)
401 PRK06853 indolepyruvate oxidor 49.0 26 0.00056 32.2 4.3 31 234-277 67-97 (197)
402 PF08002 DUF1697: Protein of u 49.0 16 0.00036 32.3 2.9 26 336-361 17-42 (137)
403 PRK07062 short chain dehydroge 48.9 54 0.0012 30.3 6.5 60 116-180 10-72 (265)
404 PRK13394 3-hydroxybutyrate deh 48.8 53 0.0012 30.0 6.4 47 127-180 23-69 (262)
405 PRK12744 short chain dehydroge 48.0 76 0.0016 29.3 7.3 57 117-180 11-74 (257)
406 cd08230 glucose_DH Glucose deh 48.0 93 0.002 30.5 8.3 40 116-156 175-218 (355)
407 PRK14028 pyruvate ferredoxin o 47.5 21 0.00045 35.3 3.7 35 233-277 65-99 (312)
408 PRK07067 sorbitol dehydrogenas 47.3 65 0.0014 29.6 6.7 44 127-180 22-65 (257)
409 KOG1562 Spermidine synthase [A 46.9 36 0.00078 34.9 5.2 189 99-347 106-305 (337)
410 PRK08220 2,3-dihydroxybenzoate 46.8 1.4E+02 0.0031 27.0 8.9 38 127-180 24-61 (252)
411 COG0677 WecC UDP-N-acetyl-D-ma 46.6 75 0.0016 33.8 7.6 33 251-284 103-137 (436)
412 PRK08945 putative oxoacyl-(acy 46.2 1.7E+02 0.0037 26.7 9.3 46 127-178 28-73 (247)
413 PRK07024 short chain dehydroge 45.8 74 0.0016 29.4 6.9 46 127-180 18-63 (257)
414 COG0286 HsdM Type I restrictio 45.7 25 0.00055 37.4 4.2 60 116-178 189-252 (489)
415 PRK05653 fabG 3-ketoacyl-(acyl 45.7 2E+02 0.0042 25.7 9.4 57 116-180 7-67 (246)
416 PRK07478 short chain dehydroge 45.6 68 0.0015 29.5 6.6 57 117-180 9-68 (254)
417 PRK11559 garR tartronate semia 45.6 86 0.0019 30.2 7.5 34 120-155 8-43 (296)
418 PRK05565 fabG 3-ketoacyl-(acyl 44.8 2E+02 0.0043 25.9 9.4 51 123-180 13-68 (247)
419 KOG1122 tRNA and rRNA cytosine 44.8 1.1E+02 0.0025 32.7 8.6 62 115-180 243-305 (460)
420 TIGR02822 adh_fam_2 zinc-bindi 44.7 1.3E+02 0.0029 29.3 8.8 40 116-156 168-208 (329)
421 COG0569 TrkA K+ transport syst 44.7 46 0.00099 31.6 5.4 50 120-180 6-57 (225)
422 PRK06914 short chain dehydroge 44.3 1.8E+02 0.0039 27.1 9.3 49 127-180 19-67 (280)
423 PRK07060 short chain dehydroge 44.3 1.8E+02 0.0039 26.2 9.1 39 130-180 28-66 (245)
424 KOG1371 UDP-glucose 4-epimeras 44.2 35 0.00077 35.2 4.8 52 120-180 12-67 (343)
425 PRK07774 short chain dehydroge 44.1 1.5E+02 0.0032 27.0 8.5 46 128-180 23-68 (250)
426 PRK07097 gluconate 5-dehydroge 44.1 1E+02 0.0022 28.6 7.6 58 116-180 12-72 (265)
427 TIGR03366 HpnZ_proposed putati 43.5 1.5E+02 0.0033 28.0 8.8 41 116-156 123-164 (280)
428 PRK08219 short chain dehydroge 43.5 1.6E+02 0.0034 26.2 8.4 41 128-180 20-60 (227)
429 PRK05876 short chain dehydroge 43.3 75 0.0016 30.2 6.6 57 117-180 9-68 (275)
430 CHL00194 ycf39 Ycf39; Provisio 43.2 1.5E+02 0.0033 28.7 8.8 47 121-180 6-56 (317)
431 PRK08213 gluconate 5-dehydroge 43.0 79 0.0017 29.1 6.6 56 117-180 15-74 (259)
432 PRK07063 short chain dehydroge 42.8 81 0.0018 29.1 6.6 60 116-180 9-71 (260)
433 TIGR03206 benzo_BadH 2-hydroxy 42.4 77 0.0017 28.7 6.3 46 128-180 20-65 (250)
434 PRK06196 oxidoreductase; Provi 41.6 89 0.0019 30.2 7.0 54 116-180 28-84 (315)
435 PRK12743 oxidoreductase; Provi 41.4 2.2E+02 0.0048 26.2 9.3 57 117-180 5-65 (256)
436 PRK08862 short chain dehydroge 41.3 75 0.0016 29.5 6.2 58 116-180 7-67 (227)
437 TIGR01202 bchC 2-desacetyl-2-h 40.9 1.1E+02 0.0024 29.5 7.5 39 116-154 147-186 (308)
438 COG4798 Predicted methyltransf 40.8 25 0.00054 34.3 2.9 26 252-278 142-168 (238)
439 PLN02896 cinnamyl-alcohol dehy 40.7 2.9E+02 0.0063 27.1 10.5 46 127-180 26-71 (353)
440 PLN02427 UDP-apiose/xylose syn 40.6 1.5E+02 0.0032 29.5 8.6 61 114-180 14-78 (386)
441 cd08255 2-desacetyl-2-hydroxye 40.5 2E+02 0.0044 26.6 9.0 41 115-156 99-141 (277)
442 PRK06197 short chain dehydroge 40.5 99 0.0021 29.6 7.0 49 127-180 32-80 (306)
443 PRK07814 short chain dehydroge 40.2 89 0.0019 29.1 6.5 47 127-180 26-72 (263)
444 PRK05854 short chain dehydroge 40.1 88 0.0019 30.4 6.7 59 117-180 17-78 (313)
445 PRK08063 enoyl-(acyl carrier p 40.0 2.2E+02 0.0048 25.8 9.0 47 127-180 20-67 (250)
446 PRK06172 short chain dehydroge 39.7 89 0.0019 28.6 6.3 58 116-180 9-69 (253)
447 PRK06500 short chain dehydroge 39.5 1E+02 0.0022 28.0 6.6 44 127-180 22-65 (249)
448 PRK06274 indolepyruvate oxidor 39.0 45 0.00098 30.5 4.3 31 234-277 66-96 (197)
449 PRK12829 short chain dehydroge 38.9 99 0.0021 28.3 6.5 56 115-180 12-71 (264)
450 PLN02662 cinnamyl-alcohol dehy 38.7 2E+02 0.0043 27.4 8.8 50 126-180 19-68 (322)
451 PRK07035 short chain dehydroge 38.7 88 0.0019 28.6 6.1 57 117-180 11-70 (252)
452 PRK06198 short chain dehydroge 38.4 2E+02 0.0043 26.3 8.5 47 128-180 23-69 (260)
453 PRK06398 aldose dehydrogenase; 38.4 1.8E+02 0.004 27.0 8.3 47 116-180 8-57 (258)
454 PRK12824 acetoacetyl-CoA reduc 38.2 3E+02 0.0064 24.7 10.2 46 127-180 18-65 (245)
455 PF03721 UDPG_MGDP_dh_N: UDP-g 38.1 39 0.00085 31.1 3.7 31 252-283 96-128 (185)
456 PRK12937 short chain dehydroge 38.1 2.3E+02 0.0051 25.5 8.8 58 116-180 7-68 (245)
457 PRK08415 enoyl-(acyl carrier p 38.0 2.7E+02 0.006 26.5 9.6 46 127-180 23-68 (274)
458 PRK12557 H(2)-dependent methyl 37.5 1.5E+02 0.0033 30.1 8.2 28 122-151 30-57 (342)
459 PRK08263 short chain dehydroge 37.4 1.1E+02 0.0024 28.6 6.8 44 127-180 19-62 (275)
460 cd08245 CAD Cinnamyl alcohol d 37.1 1.6E+02 0.0036 28.0 7.9 40 115-155 164-204 (330)
461 TIGR00497 hsdM type I restrict 37.1 1.7E+02 0.0037 31.0 8.7 43 115-157 219-265 (501)
462 PRK07985 oxidoreductase; Provi 36.9 1.4E+02 0.0029 28.8 7.4 58 116-180 51-113 (294)
463 PRK08277 D-mannonate oxidoredu 36.8 99 0.0022 28.9 6.3 57 117-180 13-72 (278)
464 PF01188 MR_MLE: Mandelate rac 36.5 41 0.0009 25.7 3.1 42 259-302 2-43 (67)
465 PLN02353 probable UDP-glucose 36.5 1.9E+02 0.004 30.9 8.9 28 126-153 15-42 (473)
466 PRK09730 putative NAD(P)-bindi 36.5 1.9E+02 0.004 26.1 7.9 46 128-180 18-64 (247)
467 TIGR03325 BphB_TodD cis-2,3-di 36.5 1.1E+02 0.0023 28.4 6.4 54 117-180 8-64 (262)
468 cd08285 NADP_ADH NADP(H)-depen 36.4 3.6E+02 0.0078 26.1 10.3 42 115-156 168-210 (351)
469 PF11312 DUF3115: Protein of u 36.3 1.9E+02 0.0041 29.7 8.5 118 115-278 88-244 (315)
470 PLN00198 anthocyanidin reducta 36.2 2.5E+02 0.0054 27.2 9.1 48 127-180 25-72 (338)
471 PRK07666 fabG 3-ketoacyl-(acyl 36.2 1.1E+02 0.0024 27.7 6.4 57 116-180 9-69 (239)
472 PRK05808 3-hydroxybutyryl-CoA 35.6 52 0.0011 31.6 4.3 35 120-156 9-45 (282)
473 PRK07819 3-hydroxybutyryl-CoA 35.4 48 0.001 32.5 4.1 39 117-157 8-48 (286)
474 PRK08993 2-deoxy-D-gluconate 3 35.4 1.3E+02 0.0027 27.9 6.7 56 116-180 12-70 (253)
475 TIGR00571 dam DNA adenine meth 35.3 43 0.00092 32.5 3.7 33 116-152 28-60 (266)
476 PRK06484 short chain dehydroge 35.2 1.1E+02 0.0024 31.6 6.9 54 117-180 8-64 (520)
477 PF05206 TRM13: Methyltransfer 35.1 34 0.00074 33.7 3.0 65 115-184 20-90 (259)
478 PF01558 POR: Pyruvate ferredo 34.8 36 0.00079 30.3 2.9 33 234-279 56-88 (173)
479 PRK06505 enoyl-(acyl carrier p 34.8 3.6E+02 0.0077 25.6 9.8 57 116-180 9-70 (271)
480 PRK08251 short chain dehydroge 34.8 1.5E+02 0.0032 27.0 6.9 49 127-180 18-66 (248)
481 PRK06057 short chain dehydroge 34.6 3.7E+02 0.008 24.7 9.7 53 116-180 9-64 (255)
482 PRK12936 3-ketoacyl-(acyl-carr 34.4 3.4E+02 0.0074 24.3 9.7 44 127-180 22-65 (245)
483 KOG1197 Predicted quinone oxid 34.3 1.6E+02 0.0035 30.1 7.4 38 119-157 154-191 (336)
484 PRK05562 precorrin-2 dehydroge 34.3 77 0.0017 30.7 5.2 50 116-176 27-78 (223)
485 PRK08303 short chain dehydroge 34.0 2.7E+02 0.0058 27.2 9.0 58 116-180 10-80 (305)
486 PRK06949 short chain dehydroge 34.0 1.3E+02 0.0028 27.5 6.5 47 127-180 25-71 (258)
487 PF05050 Methyltransf_21: Meth 34.0 74 0.0016 26.9 4.6 38 119-156 1-42 (167)
488 TIGR00872 gnd_rel 6-phosphoglu 33.9 1.5E+02 0.0032 29.0 7.2 34 120-155 6-41 (298)
489 TIGR02175 PorC_KorC 2-oxoacid: 33.8 57 0.0012 29.6 4.0 33 234-277 65-97 (177)
490 PRK06035 3-hydroxyacyl-CoA deh 33.6 56 0.0012 31.7 4.2 38 117-156 6-45 (291)
491 PF03141 Methyltransf_29: Puta 33.4 57 0.0012 35.4 4.5 41 233-275 425-465 (506)
492 PRK08226 short chain dehydroge 33.1 1.3E+02 0.0029 27.6 6.5 57 116-180 8-67 (263)
493 cd08281 liver_ADH_like1 Zinc-d 32.5 2.4E+02 0.0053 27.8 8.6 40 117-156 195-235 (371)
494 PRK07680 late competence prote 32.2 3.3E+02 0.0072 26.0 9.2 40 235-283 62-101 (273)
495 KOG2918 Carboxymethyl transfer 32.0 4.3E+02 0.0092 27.5 10.1 66 79-150 59-124 (335)
496 PRK07102 short chain dehydroge 32.0 1E+02 0.0023 28.0 5.5 48 127-180 17-64 (243)
497 PRK09135 pteridine reductase; 31.9 3.8E+02 0.0082 24.0 9.1 59 116-180 8-70 (249)
498 PRK07825 short chain dehydroge 31.8 1.5E+02 0.0032 27.6 6.6 54 116-180 7-63 (273)
499 PRK08293 3-hydroxybutyryl-CoA 31.2 66 0.0014 31.2 4.2 35 120-156 9-45 (287)
500 TIGR01963 PHB_DH 3-hydroxybuty 31.0 1.6E+02 0.0034 26.7 6.5 46 128-180 18-63 (255)
No 1
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.90 E-value=2.5e-22 Score=194.88 Aligned_cols=229 Identities=17% Similarity=0.184 Sum_probs=159.7
Q ss_pred CCCCCchH-------HHHHHhhcCChh-----hHHHHHHHHHHhhCC-CCCCcccccCCCccHhHHHHHHhCC-CCeEEE
Q 045407 77 STDMPSKF-------LLYQQSVQSPKG-----DISYLQKFFLIYVGG-RQPLHLQEDFCGTALLSTEWLRSDS-RRTAVG 142 (382)
Q Consensus 77 ~~~~p~~~-------~LYd~~vq~p~~-----Di~yl~~~f~~y~gg-r~p~~LLEl~CGTG~LS~elar~g~-~~tVvG 142 (382)
.+.+|+|+ .||++.++-|+| |+..++......+.. ..+.+|||+|||||+.+..|++... .++|+|
T Consensus 14 ~k~lp~~~~yd~~G~~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~ 93 (301)
T TIGR03438 14 PKTLPPKYFYDARGSELFEQICELPEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVP 93 (301)
T ss_pred CCCCCchhcccchHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEE
Confidence 35778776 478888888876 445666655543311 1235799999999999999999964 368999
Q ss_pred EeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCC
Q 045407 143 LDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASS 222 (382)
Q Consensus 143 VDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 222 (382)
||+|++||+.|+++..+.. ...+|.++++||.++.. +
T Consensus 94 iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~----------------~------------------------ 130 (301)
T TIGR03438 94 IDISADALKESAAALAADY---PQLEVHGICADFTQPLA----------------L------------------------ 130 (301)
T ss_pred EECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhh----------------h------------------------
Confidence 9999999999999854311 23578899999987530 1
Q ss_pred CCCcCccCCCCCCc---cEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchh---------------
Q 045407 223 GDNCSKQKSSLPAR---DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSE--------------- 284 (382)
Q Consensus 223 ~~~~~~~~~~~~~f---DiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e--------------- 284 (382)
.+.+ +.++++..|.++..++++....|++++++|+ |||+||+++.-.....
T Consensus 131 ----------~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~-pgG~~lig~d~~~~~~~~~~aY~d~~g~t~~ 199 (301)
T TIGR03438 131 ----------PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLG-PGGGLLIGVDLVKDPAVLEAAYNDAAGVTAA 199 (301)
T ss_pred ----------hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcC-CCCEEEEeccCCCCHHHHHHhhcCchhhHHH
Confidence 1122 5666666666666678999999999999999 9999999775211110
Q ss_pred --hhh-H-hhhc----cCCeEEEEeecccccccceEEEEEEEE------eecccceeeeeee-eeE--EecCHHHHHHHH
Q 045407 285 --QKL-R-LQRR----FANFTYVWEQAEFDIIERKTRISLHFH------LQKEQKKLRHAFS-YNW--RLWSLPEIKDCL 347 (382)
Q Consensus 285 --~kl-~-~~R~----~~~~tyvWeq~~fD~~~~~~ri~L~F~------~~~~~~~lr~~fs-y~~--Rlysl~EI~d~L 347 (382)
.++ . ..+. ++...|.|+. .||+..+++++.|.++ +.+....+.+..+ +.+ |-|++++|+.+|
T Consensus 200 F~~N~L~~~n~~l~~~f~~~~~~~~~-~~~~~~~~ie~~l~~~~~~~v~~~~~~~~~~~ge~ih~e~S~ky~~~~~~~~l 278 (301)
T TIGR03438 200 FNLNLLRRLNRELGGDFDPDAFRHRA-FYNEERSRIEMHLVSRRDQTVRLAGLTVRFAAGETIHTENSYKFSLERFAALA 278 (301)
T ss_pred HHHHHHHHHHHHhccCCChHHcEEEE-EEcCCcCeEEEEEEeCCCEEEEECCeEEEecCCCEEeEEEecCCCHHHHHHHH
Confidence 000 0 0111 3445677886 8899999999999884 2211101222222 445 999999999999
Q ss_pred HHcCCcEEEEEec
Q 045407 348 EEAGFRSVHFWLR 360 (382)
Q Consensus 348 eeAGF~~V~v~~r 360 (382)
+.|||+.+++|..
T Consensus 279 ~~aGf~~~~~~~d 291 (301)
T TIGR03438 279 AAAGLRPEQVWTD 291 (301)
T ss_pred HHCCCceeEEEEC
Confidence 9999999999963
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=7.8e-19 Score=166.01 Aligned_cols=172 Identities=20% Similarity=0.274 Sum_probs=80.8
Q ss_pred hCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhccc
Q 045407 109 VGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 109 ~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
...+.+.+|||+|||||.++..++++ ++..+|+|+|+|++||+.|+++... .+..+|.++++|..+++
T Consensus 43 ~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~----~~~~~i~~v~~da~~lp------- 111 (233)
T PF01209_consen 43 LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR----EGLQNIEFVQGDAEDLP------- 111 (233)
T ss_dssp HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH----TT--SEEEEE-BTTB---------
T ss_pred cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh----hCCCCeeEEEcCHHHhc-------
Confidence 34444678999999999999999986 5667999999999999999998643 22348999999998887
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
|....||+|++.+ .+..+ .+..+.+++++++|+
T Consensus 112 -------------------------------------------~~d~sfD~v~~~f-glrn~---~d~~~~l~E~~RVLk 144 (233)
T PF01209_consen 112 -------------------------------------------FPDNSFDAVTCSF-GLRNF---PDRERALREMYRVLK 144 (233)
T ss_dssp -------------------------------------------S-TT-EEEEEEES--GGG----SSHHHHHHHHHHHEE
T ss_pred -------------------------------------------CCCCceeEEEHHh-hHHhh---CCHHHHHHHHHHHcC
Confidence 2357899999876 44333 467789999999999
Q ss_pred CCCcEEEE-eccCCCc-hhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeee-EEecCHHHHH
Q 045407 268 KKGGIFVM-DLYGGTS-SEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYN-WRLWSLPEIK 344 (382)
Q Consensus 268 ~pGGiFVf-Dl~gg~s-~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~-~Rlysl~EI~ 344 (382)
|||.|++ |+..... ....+ . . +++. .+=|.-..+ +..+...| +....+ .+..+..|+.
T Consensus 145 -PGG~l~ile~~~p~~~~~~~~-~-~------~y~~--~ilP~~g~l-------~~~~~~~Y-~yL~~Si~~f~~~~~~~ 205 (233)
T PF01209_consen 145 -PGGRLVILEFSKPRNPLLRAL-Y-K------FYFK--YILPLIGRL-------LSGDREAY-RYLPESIRRFPSPEELK 205 (233)
T ss_dssp -EEEEEEEEEEEB-SSHHHHHH-H-H------H-----------------------------------------------
T ss_pred -CCeEEEEeeccCCCCchhhce-e-e------eeec--ccccccccc-------cccccccc-ccccccccccccccccc
Confidence 9998876 8874332 21111 0 0 0000 000100000 00110011 111112 2677899999
Q ss_pred HHHHHcCCcEEEE
Q 045407 345 DCLEEAGFRSVHF 357 (382)
Q Consensus 345 d~LeeAGF~~V~v 357 (382)
++|++|||+.|++
T Consensus 206 ~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 206 ELLEEAGFKNVEY 218 (233)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 9999999998875
No 3
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=3.7e-18 Score=138.95 Aligned_cols=107 Identities=22% Similarity=0.270 Sum_probs=86.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC-CCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV-LQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV-~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.++..|++..+..+|+|||+|++||+.|+++... .....+|.++++|+ ..+.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~~------------- 66 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE---EGLSDRITFVQGDAEFDPD------------- 66 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH---TTTTTTEEEEESCCHGGTT-------------
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh---cCCCCCeEEEECccccCcc-------------
Confidence 468999999999999999955567899999999999999999722 12346999999999 2222
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc-chhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN-YSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn-~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. .++||+|++.. ....+++. ++...+++++++.|+ |||+
T Consensus 67 ----~----------------------------------~~~~D~v~~~~~~~~~~~~~-~~~~~~l~~~~~~L~-pgG~ 106 (112)
T PF12847_consen 67 ----F----------------------------------LEPFDLVICSGFTLHFLLPL-DERRRVLERIRRLLK-PGGR 106 (112)
T ss_dssp ----T----------------------------------SSCEEEEEECSGSGGGCCHH-HHHHHHHHHHHHHEE-EEEE
T ss_pred ----c----------------------------------CCCCCEEEECCCccccccch-hHHHHHHHHHHHhcC-CCcE
Confidence 1 46699999998 33335444 889999999999999 9999
Q ss_pred EEEec
Q 045407 273 FVMDL 277 (382)
Q Consensus 273 FVfDl 277 (382)
||++.
T Consensus 107 lvi~~ 111 (112)
T PF12847_consen 107 LVINT 111 (112)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99964
No 4
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=3e-18 Score=161.36 Aligned_cols=198 Identities=13% Similarity=0.202 Sum_probs=124.1
Q ss_pred HHHHhhc--CChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHH--hCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 86 LYQQSVQ--SPKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLR--SDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 86 LYd~~vq--~p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar--~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
.|+..+. -|.|+. ..+..+...++. ...+|||+|||||.++..|++ ..+..+|+|||+|++||++|+++...
T Consensus 27 ~yd~~~~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~ 104 (247)
T PRK15451 27 VFPDMIQRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA 104 (247)
T ss_pred hhhhHHHhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 5655553 344443 223333333221 235799999999999999988 34667899999999999999998532
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
.+ ...+|.++++|+.+.+ .+.+|+|
T Consensus 105 -~~--~~~~v~~~~~d~~~~~----------------------------------------------------~~~~D~v 129 (247)
T PRK15451 105 -YK--APTPVDVIEGDIRDIA----------------------------------------------------IENASMV 129 (247)
T ss_pred -cC--CCCCeEEEeCChhhCC----------------------------------------------------CCCCCEE
Confidence 11 1237999999987655 3458988
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCc-hhhhhHhhhccCCeEEEEeecccccccceEEEEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTS-SEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLH 317 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s-~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~ 317 (382)
++. .++.++. ..+...+|++++++|+ |||+|++ |.+.... ....+.. +.... ++....+.... +
T Consensus 130 v~~-~~l~~l~-~~~~~~~l~~i~~~Lk-pGG~l~l~e~~~~~~~~~~~~~~-~~~~~---~~~~~g~s~~e--i----- 195 (247)
T PRK15451 130 VLN-FTLQFLE-PSERQALLDKIYQGLN-PGGALVLSEKFSFEDAKVGELLF-NMHHD---FKRANGYSELE--I----- 195 (247)
T ss_pred ehh-hHHHhCC-HHHHHHHHHHHHHhcC-CCCEEEEEEecCCCcchhHHHHH-HHHHH---HHHHcCCCHHH--H-----
Confidence 765 4666665 4667899999999999 9999988 7553221 1111100 00000 01111111100 0
Q ss_pred EEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEecc
Q 045407 318 FHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLRE 361 (382)
Q Consensus 318 F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r~ 361 (382)
. ..+.+.....+..|+++..++|++|||+.|..|++.
T Consensus 196 ------~-~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~ 232 (247)
T PRK15451 196 ------S-QKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQC 232 (247)
T ss_pred ------H-HHHHHHHhhcccCCHHHHHHHHHHcCchhHHHHHHH
Confidence 0 001122233467899999999999999999887753
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.73 E-value=5.1e-17 Score=154.98 Aligned_cols=172 Identities=17% Similarity=0.113 Sum_probs=110.0
Q ss_pred CCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
...+|||+|||||.++..+++. ++..+|+|||+|++||++|+++.... ......+|.++++|+.+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~-~~~~~~~i~~~~~d~~~lp----------- 140 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELK-AKSCYKNIEWIEGDATDLP----------- 140 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhh-hhccCCCeEEEEcccccCC-----------
Confidence 3468999999999999999986 55568999999999999998874210 0112347999999998776
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+....||+|++.+ ++.++. +...++++++++|+ |||
T Consensus 141 ---------------------------------------~~~~sfD~V~~~~-~l~~~~---d~~~~l~ei~rvLk-pGG 176 (261)
T PLN02233 141 ---------------------------------------FDDCYFDAITMGY-GLRNVV---DRLKAMQEMYRVLK-PGS 176 (261)
T ss_pred ---------------------------------------CCCCCEeEEEEec-ccccCC---CHHHHHHHHHHHcC-cCc
Confidence 2246799998754 444444 56788999999999 999
Q ss_pred EEEE-eccCCCc-hhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHH
Q 045407 272 IFVM-DLYGGTS-SEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEE 349 (382)
Q Consensus 272 iFVf-Dl~gg~s-~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~Lee 349 (382)
.|++ |+...+. +...+ .... +..++- +..... .... .+..-..+..+.++..|+.++|++
T Consensus 177 ~l~i~d~~~~~~~~~~~~--~~~~--~~~~~~-----~~~~~~--------~~~~-~y~~l~~s~~~f~s~~el~~ll~~ 238 (261)
T PLN02233 177 RVSILDFNKSTQPFTTSM--QEWM--IDNVVV-----PVATGY--------GLAK-EYEYLKSSINEYLTGEELEKLALE 238 (261)
T ss_pred EEEEEECCCCCcHHHHHH--HHHH--Hhhhhh-----HHHHHh--------CChH-HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9877 6653321 11100 0000 000000 000000 0000 000000111268999999999999
Q ss_pred cCCcEEEEE
Q 045407 350 AGFRSVHFW 358 (382)
Q Consensus 350 AGF~~V~v~ 358 (382)
|||+.++.+
T Consensus 239 aGF~~~~~~ 247 (261)
T PLN02233 239 AGFSSAKHY 247 (261)
T ss_pred CCCCEEEEE
Confidence 999999865
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.70 E-value=3e-17 Score=152.81 Aligned_cols=173 Identities=14% Similarity=0.233 Sum_probs=113.1
Q ss_pred CcccccCCCccHhHHHHHHhC--CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD--SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g--~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+|||+|||||.++..+++.. +..+|+|||+|++||+.|+++... . ....++.++++|+.+++
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~-~--~~~~~v~~~~~d~~~~~------------ 119 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-Y--HSEIPVEILCNDIRHVE------------ 119 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-c--CCCCCeEEEECChhhCC------------
Confidence 479999999999999999863 457899999999999999987532 1 11247899999997665
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+.+|+|++. +++.|++. ++...+|++++++|+ |||+
T Consensus 120 ----------------------------------------~~~~d~v~~~-~~l~~~~~-~~~~~~l~~i~~~Lk-pgG~ 156 (239)
T TIGR00740 120 ----------------------------------------IKNASMVILN-FTLQFLPP-EDRIALLTKIYEGLN-PNGV 156 (239)
T ss_pred ----------------------------------------CCCCCEEeee-cchhhCCH-HHHHHHHHHHHHhcC-CCeE
Confidence 3558987754 47777654 578899999999999 9999
Q ss_pred EEE-eccCCC-chhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHc
Q 045407 273 FVM-DLYGGT-SSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEA 350 (382)
Q Consensus 273 FVf-Dl~gg~-s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeA 350 (382)
|++ |.+... .......... ... +.....++... +. . + +....-..+.+|++|++.+|++|
T Consensus 157 l~i~d~~~~~~~~~~~~~~~~-~~~---~~~~~g~~~~~--~~--------~---~-~~~~~~~~~~~s~~~~~~~l~~a 218 (239)
T TIGR00740 157 LVLSEKFRFEDTKINHLLIDL-HHQ---FKRANGYSELE--IS--------Q---K-RTALENVMRTDSIETHKARLKNV 218 (239)
T ss_pred EEEeecccCCCHhHHHHHHHH-HHH---HHHHcCCCHHH--HH--------H---H-HHHHhccCCCCCHHHHHHHHHHc
Confidence 999 554322 1111110000 000 00000111100 00 0 0 00111123678999999999999
Q ss_pred CCcEEEEEeccCc
Q 045407 351 GFRSVHFWLREMP 363 (382)
Q Consensus 351 GF~~V~v~~r~~~ 363 (382)
||+.+.++++.+.
T Consensus 219 GF~~~~~~~~~~~ 231 (239)
T TIGR00740 219 GFSHVELWFQCFN 231 (239)
T ss_pred CCchHHHHHHHHh
Confidence 9999888765443
No 7
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.68 E-value=1.9e-15 Score=149.64 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=109.5
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..|++.| .+|+|||+|++||+.|+++.... ....+|.++++|+.++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~---~~~~~i~~~~~dae~l~-------------- 193 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMD---PVTSTIEYLCTTAEKLA-------------- 193 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhc---CcccceeEEecCHHHhh--------------
Confidence 479999999999999999987 47999999999999999874211 01237999999986654
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
. ....||+|+|++ ++.++.+. ..+++.+++.|+ |||+|+
T Consensus 194 ---~---------------------------------~~~~FD~Vi~~~-vLeHv~d~---~~~L~~l~r~Lk-PGG~li 232 (322)
T PLN02396 194 ---D---------------------------------EGRKFDAVLSLE-VIEHVANP---AEFCKSLSALTI-PNGATV 232 (322)
T ss_pred ---h---------------------------------ccCCCCEEEEhh-HHHhcCCH---HHHHHHHHHHcC-CCcEEE
Confidence 1 146799999986 88887765 568888999999 999999
Q ss_pred EeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeE-EecCHHHHHHHHHHcCCc
Q 045407 275 MDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNW-RLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 275 fDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~-Rlysl~EI~d~LeeAGF~ 353 (382)
+...+.+.... ........|+.. . +.++. +.| +.+++.|+..+|+++||+
T Consensus 233 ist~nr~~~~~----~~~i~~~eyi~~---------~--------lp~gt--------h~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 233 LSTINRTMRAY----ASTIVGAEYILR---------W--------LPKGT--------HQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred EEECCcCHHHH----HHhhhhHHHHHh---------c--------CCCCC--------cCccCCCCHHHHHHHHHHcCCe
Confidence 97654332111 000011111100 0 11111 223 589999999999999999
Q ss_pred EEEE
Q 045407 354 SVHF 357 (382)
Q Consensus 354 ~V~v 357 (382)
.+.+
T Consensus 284 i~~~ 287 (322)
T PLN02396 284 VKEM 287 (322)
T ss_pred EEEE
Confidence 9887
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=8.4e-17 Score=153.64 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=91.0
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||||.++..|++....+.|+|+|+|+.||+.|+++...+ +...|+|++||..+++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~----~~~~i~fv~~dAe~LP------------ 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK----GVQNVEFVVGDAENLP------------ 114 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc----CccceEEEEechhhCC------------
Confidence 467899999999999999999998889999999999999999997441 2223999999999888
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
|+...||+|++-+ ++-.+ .+..++|+.++++|+ |||.
T Consensus 115 --------------------------------------f~D~sFD~vt~~f-glrnv---~d~~~aL~E~~RVlK-pgG~ 151 (238)
T COG2226 115 --------------------------------------FPDNSFDAVTISF-GLRNV---TDIDKALKEMYRVLK-PGGR 151 (238)
T ss_pred --------------------------------------CCCCccCEEEeee-hhhcC---CCHHHHHHHHHHhhc-CCeE
Confidence 4577899999875 54444 477889999999999 9998
Q ss_pred EEE-eccC
Q 045407 273 FVM-DLYG 279 (382)
Q Consensus 273 FVf-Dl~g 279 (382)
|+. ++..
T Consensus 152 ~~vle~~~ 159 (238)
T COG2226 152 LLVLEFSK 159 (238)
T ss_pred EEEEEcCC
Confidence 877 7764
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=8.4e-16 Score=144.64 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=82.8
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..++++.+..+|+|+|+|+.||+.|+++ ++.++++|+.++.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~----------- 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK----------- 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC-----------
Confidence 335689999999999999999997667899999999999999775 3668899986543
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
..++||+|+|. .++.|+.+ ....++.++++|+ |||
T Consensus 86 ----------------------------------------~~~~fD~v~~~-~~l~~~~d---~~~~l~~~~~~Lk-pgG 120 (255)
T PRK14103 86 ----------------------------------------PKPDTDVVVSN-AALQWVPE---HADLLVRWVDELA-PGS 120 (255)
T ss_pred ----------------------------------------CCCCceEEEEe-hhhhhCCC---HHHHHHHHHHhCC-CCc
Confidence 13579999995 47777764 4778999999999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
.|++-+.+
T Consensus 121 ~l~~~~~~ 128 (255)
T PRK14103 121 WIAVQVPG 128 (255)
T ss_pred EEEEEcCC
Confidence 99996543
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.66 E-value=6.6e-16 Score=120.22 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=78.3
Q ss_pred cccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccc
Q 045407 118 QEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNIS 197 (382)
Q Consensus 118 LEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~ 197 (382)
||+|||+|..+..|++.+ ..+|+|+|+|++|+++|+++... ..+.+.++|+.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~-~~~v~~~D~~~~~~~~~~~~~~~-------~~~~~~~~d~~~l~----------------- 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG-GASVTGIDISEEMLEQARKRLKN-------EGVSFRQGDAEDLP----------------- 55 (95)
T ss_dssp EEET-TTSHHHHHHHHTT-TCEEEEEES-HHHHHHHHHHTTT-------STEEEEESBTTSSS-----------------
T ss_pred CEecCcCCHHHHHHHhcc-CCEEEEEeCCHHHHHHHHhcccc-------cCchheeehHHhCc-----------------
Confidence 699999999999999993 36899999999999999998632 35669999998887
Q ss_pred cccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 198 LEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
|....||+|++.+ ++.|+ ++...+|++++++|+ |||+|+|
T Consensus 56 ---------------------------------~~~~sfD~v~~~~-~~~~~---~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 56 ---------------------------------FPDNSFDVVFSNS-VLHHL---EDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp ---------------------------------S-TT-EEEEEEES-HGGGS---SHHHHHHHHHHHHEE-EEEEEEE
T ss_pred ---------------------------------ccccccccccccc-ceeec---cCHHHHHHHHHHHcC-cCeEEeC
Confidence 2357899999886 55555 788999999999999 9999986
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.64 E-value=1.3e-15 Score=140.03 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=81.5
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..|++. ++..+|+|+|+|++|++.|+++... .+..++.++++|+.+.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~------------ 109 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD----AGLHNVELVHGNAMELP------------ 109 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh----cCCCceEEEEechhcCC------------
Confidence 358999999999999999987 4556899999999999999988532 12347999999987654
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+...+||+|++.+ ++.++. +....++.+++.|+ |||+
T Consensus 110 --------------------------------------~~~~~fD~V~~~~-~l~~~~---~~~~~l~~~~~~Lk-~gG~ 146 (231)
T TIGR02752 110 --------------------------------------FDDNSFDYVTIGF-GLRNVP---DYMQVLREMYRVVK-PGGK 146 (231)
T ss_pred --------------------------------------CCCCCccEEEEec-ccccCC---CHHHHHHHHHHHcC-cCeE
Confidence 1245799998754 555544 45678999999999 9999
Q ss_pred EEE
Q 045407 273 FVM 275 (382)
Q Consensus 273 FVf 275 (382)
+++
T Consensus 147 l~~ 149 (231)
T TIGR02752 147 VVC 149 (231)
T ss_pred EEE
Confidence 987
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.64 E-value=3.7e-15 Score=142.35 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=120.7
Q ss_pred hHHHHHHhhc---CChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 83 KFLLYQQSVQ---SPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 83 ~~~LYd~~vq---~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
.-.+|+..+. =..+.+.....++.. ++-....+|||+|||+|.++..|++.. ..+|+|+|+|+.|++.|+++...
T Consensus 20 ~~~~~e~~~g~~~~~~gg~~~~~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 20 GIKAYEFIFGEDYISSGGIEATTKILSD-IELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred cchhHHHHhCCCCCCCCchHHHHHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc
Confidence 4566777663 123334445555554 333334679999999999999998753 35899999999999999998532
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
..+|.+.++|+.+.+ ++..+||+|
T Consensus 98 ------~~~i~~~~~D~~~~~--------------------------------------------------~~~~~FD~V 121 (263)
T PTZ00098 98 ------KNKIEFEANDILKKD--------------------------------------------------FPENTFDMI 121 (263)
T ss_pred ------CCceEEEECCcccCC--------------------------------------------------CCCCCeEEE
Confidence 247999999987654 224679999
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHF 318 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F 318 (382)
++.. ++.|+ ..++...+|++++++|+ |||.|++ |..... . -.|.. .+.. .
T Consensus 122 ~s~~-~l~h~-~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~--------------~-~~~~~-~~~~---~------- 172 (263)
T PTZ00098 122 YSRD-AILHL-SYADKKKLFEKCYKWLK-PNGILLITDYCADK--------------I-ENWDE-EFKA---Y------- 172 (263)
T ss_pred EEhh-hHHhC-CHHHHHHHHHHHHHHcC-CCcEEEEEEecccc--------------c-cCcHH-HHHH---H-------
Confidence 9864 55554 33578899999999999 9999998 432110 0 01221 0000 0
Q ss_pred EeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 319 HLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 319 ~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
+ ... .+.++++.++.++|++|||+.|.+.
T Consensus 173 -~-~~~---------~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 173 -I-KKR---------KYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred -H-Hhc---------CCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 0 000 1246899999999999999998874
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.64 E-value=2.8e-15 Score=141.33 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=87.0
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..|++.|. +|+|+|+|++||+.|+++.... + -..++.++++|+.++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~-g--~~~~v~~~~~d~~~l~~---------- 107 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAK-G--VSDNMQFIHCAAQDIAQ---------- 107 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-C--CccceEEEEcCHHHHhh----------
Confidence 3467899999999999999999985 7999999999999999875321 1 12478999999866541
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+....||+|++. .++.|+.++ ..+|+.+++.|+ |||
T Consensus 108 ---------------------------------------~~~~~fD~V~~~-~vl~~~~~~---~~~l~~~~~~Lk-pgG 143 (255)
T PRK11036 108 ---------------------------------------HLETPVDLILFH-AVLEWVADP---KSVLQTLWSVLR-PGG 143 (255)
T ss_pred ---------------------------------------hcCCCCCEEEeh-hHHHhhCCH---HHHHHHHHHHcC-CCe
Confidence 114579999976 477888665 478999999999 999
Q ss_pred EEEEeccCCC
Q 045407 272 IFVMDLYGGT 281 (382)
Q Consensus 272 iFVfDl~gg~ 281 (382)
+|++-.++..
T Consensus 144 ~l~i~~~n~~ 153 (255)
T PRK11036 144 ALSLMFYNAN 153 (255)
T ss_pred EEEEEEECcc
Confidence 9998665543
No 14
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.62 E-value=5.2e-15 Score=146.10 Aligned_cols=192 Identities=17% Similarity=0.093 Sum_probs=119.5
Q ss_pred hHHHHHHhhcCChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 83 KFLLYQQSVQSPKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
++.|++-.+ ..+. +..-..+..+++.....+|||+|||||.++..+++.|+. .|+|||.|+.|+..+......
T Consensus 92 ~~~l~~~~~---~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~- 166 (314)
T TIGR00452 92 PFELSGIKI---DSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKL- 166 (314)
T ss_pred CcccccccC---CHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHH-
Confidence 455555442 2233 333333333343333468999999999999999999874 799999999999875432110
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
+. ...++.+..+++.+++ . ...||+|+
T Consensus 167 ~~--~~~~v~~~~~~ie~lp-----------------~----------------------------------~~~FD~V~ 193 (314)
T TIGR00452 167 LD--NDKRAILEPLGIEQLH-----------------E----------------------------------LYAFDTVF 193 (314)
T ss_pred hc--cCCCeEEEECCHHHCC-----------------C----------------------------------CCCcCEEE
Confidence 11 1246788888875554 1 34799999
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEe
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHL 320 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~ 320 (382)
|+. ++.|+. +...+|++++++|+ |||.||+....-... .....+ +..+
T Consensus 194 s~g-vL~H~~---dp~~~L~el~r~Lk-pGG~Lvletl~i~g~-----------~~~~l~------p~~r---------- 241 (314)
T TIGR00452 194 SMG-VLYHRK---SPLEHLKQLKHQLV-IKGELVLETLVIDGD-----------LNTVLV------PKDR---------- 241 (314)
T ss_pred Ecc-hhhccC---CHHHHHHHHHHhcC-CCCEEEEEEEEecCc-----------cccccC------chHH----------
Confidence 986 455544 55778999999999 999999954210000 000000 0000
Q ss_pred ecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEEeccCchhhhhccc
Q 045407 321 QKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFWLREMPDAREMRNT 371 (382)
Q Consensus 321 ~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~~r~~~~~~~~~~~ 371 (382)
+.+ ....|-++|..+++.+|++|||+.|++..-......|.|.|
T Consensus 242 ------y~k-~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~tt~~eqr~t 285 (314)
T TIGR00452 242 ------YAK-MKNVYFIPSVSALKNWLEKVGFENFRILDVLKTTPEEQRKT 285 (314)
T ss_pred ------HHh-ccccccCCCHHHHHHHHHHCCCeEEEEEeccCCCHHHhhhh
Confidence 000 01113467999999999999999999875444444454444
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.61 E-value=3.6e-15 Score=147.40 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=84.2
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||+|.++..|+++. ..+|+|||+|+.|++.|+++.... ....+|.++++|+.+++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~---g~~~~v~~~~~D~~~~~------------ 181 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ---GLSDKVSFQVADALNQP------------ 181 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc---CCCCceEEEEcCcccCC------------
Confidence 35689999999999999999874 258999999999999999875321 11237999999998766
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
|..+.||+|++.. ++.++. +...+|++++++|+ |||.
T Consensus 182 --------------------------------------~~~~~FD~V~s~~-~~~h~~---d~~~~l~e~~rvLk-pGG~ 218 (340)
T PLN02244 182 --------------------------------------FEDGQFDLVWSME-SGEHMP---DKRKFVQELARVAA-PGGR 218 (340)
T ss_pred --------------------------------------CCCCCccEEEECC-chhccC---CHHHHHHHHHHHcC-CCcE
Confidence 2356799999975 566665 45789999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
|++-
T Consensus 219 lvi~ 222 (340)
T PLN02244 219 IIIV 222 (340)
T ss_pred EEEE
Confidence 9983
No 16
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.61 E-value=1.6e-15 Score=123.38 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=79.2
Q ss_pred ccccCCCccHhHHHHHHhC---CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 117 LQEDFCGTALLSTEWLRSD---SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g---~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|||+|||||+.+..+++.. +..+++|||+|++||+.|+++... .+.++.++++|+.+++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-----~~~~~~~~~~D~~~l~~------------ 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-----DGPKVRFVQADARDLPF------------ 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-----TTTTSEEEESCTTCHHH------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-----cCCceEEEECCHhHCcc------------
Confidence 6899999999999999884 446899999999999999998643 12378999999988662
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
..++||+|+++.-++.| .+++++...|++++++|+ |||
T Consensus 64 --------------------------------------~~~~~D~v~~~~~~~~~-~~~~~~~~ll~~~~~~l~-pgG 101 (101)
T PF13649_consen 64 --------------------------------------SDGKFDLVVCSGLSLHH-LSPEELEALLRRIARLLR-PGG 101 (101)
T ss_dssp --------------------------------------HSSSEEEEEE-TTGGGG-SSHHHHHHHHHHHHHTEE-EEE
T ss_pred --------------------------------------cCCCeeEEEEcCCccCC-CCHHHHHHHHHHHHHHhC-CCC
Confidence 15689999998878888 666899999999999999 898
No 17
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.61 E-value=1.2e-14 Score=143.16 Aligned_cols=149 Identities=21% Similarity=0.231 Sum_probs=103.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|.++..+++.|+. .|+|||+|+.|+..++..... ++ ...+|.++.+|+.+++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~-~~--~~~~i~~~~~d~e~lp------------- 185 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKL-LG--NDQRAHLLPLGIEQLP------------- 185 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHh-cC--CCCCeEEEeCCHHHCC-------------
Confidence 457999999999999999999974 699999999999765433211 11 1247899999987665
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ ...||+|+|+.. +-|+ .+...+|++++++|+ |||.|
T Consensus 186 ----~----------------------------------~~~FD~V~s~~v-l~H~---~dp~~~L~~l~~~Lk-pGG~l 222 (322)
T PRK15068 186 ----A----------------------------------LKAFDTVFSMGV-LYHR---RSPLDHLKQLKDQLV-PGGEL 222 (322)
T ss_pred ----C----------------------------------cCCcCEEEECCh-hhcc---CCHHHHHHHHHHhcC-CCcEE
Confidence 1 456999999763 3343 456789999999999 99999
Q ss_pred EEecc--CCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 274 VMDLY--GGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 274 VfDl~--gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
|++.. .+.. ....++.. .|. . +.-.|-+.|+.++..+|++||
T Consensus 223 vl~~~~i~~~~------------~~~l~p~~-~y~-------------------~----~~~~~~lps~~~l~~~L~~aG 266 (322)
T PRK15068 223 VLETLVIDGDE------------NTVLVPGD-RYA-------------------K----MRNVYFIPSVPALKNWLERAG 266 (322)
T ss_pred EEEEEEecCCC------------ccccCchh-HHh-------------------c----CccceeCCCHHHHHHHHHHcC
Confidence 99742 1100 00111110 000 0 001123679999999999999
Q ss_pred CcEEEEE
Q 045407 352 FRSVHFW 358 (382)
Q Consensus 352 F~~V~v~ 358 (382)
|+.+++.
T Consensus 267 F~~i~~~ 273 (322)
T PRK15068 267 FKDVRIV 273 (322)
T ss_pred CceEEEE
Confidence 9999885
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=7.5e-15 Score=134.28 Aligned_cols=102 Identities=9% Similarity=-0.007 Sum_probs=81.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||+|.++..|+++|. +|+|+|+|++||+.|+++... .+...|.+..+|+.+++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~----~~~~~v~~~~~d~~~~~------------- 91 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAA----ENLDNLHTAVVDLNNLT------------- 91 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHH----cCCCcceEEecChhhCC-------------
Confidence 46799999999999999999985 799999999999999987432 12235788888876554
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ .++||+|+|.+ +++| ..++++..+|+.++++|+ |||++
T Consensus 92 ----~----------------------------------~~~fD~I~~~~-~~~~-~~~~~~~~~l~~i~~~Lk-pgG~~ 130 (197)
T PRK11207 92 ----F----------------------------------DGEYDFILSTV-VLMF-LEAKTIPGLIANMQRCTK-PGGYN 130 (197)
T ss_pred ----c----------------------------------CCCcCEEEEec-chhh-CCHHHHHHHHHHHHHHcC-CCcEE
Confidence 1 35699999875 4554 456789999999999999 99986
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 131 ~~ 132 (197)
T PRK11207 131 LI 132 (197)
T ss_pred EE
Confidence 54
No 19
>PRK06202 hypothetical protein; Provisional
Probab=99.57 E-value=2.5e-14 Score=132.67 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=106.7
Q ss_pred CCCCcccccCCCccHhHHHHHH----hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhccc
Q 045407 112 RQPLHLQEDFCGTALLSTEWLR----SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar----~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
..+.+|||+|||||.++..|++ .|+..+|+|||+|++||+.|+++... .++.+.++++..++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l~------- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDELV------- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEeccccc-------
Confidence 3456899999999999988875 36656899999999999999887421 23556665544333
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
+....||+|+|.. ++.|+.+ +++...|+.+++.|+
T Consensus 125 -------------------------------------------~~~~~fD~V~~~~-~lhh~~d-~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 125 -------------------------------------------AEGERFDVVTSNH-FLHHLDD-AEVVRLLADSAALAR 159 (232)
T ss_pred -------------------------------------------ccCCCccEEEECC-eeecCCh-HHHHHHHHHHHHhcC
Confidence 0145799999975 7888765 468899999999987
Q ss_pred CCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHH
Q 045407 268 KKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCL 347 (382)
Q Consensus 268 ~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~L 347 (382)
|++++.|+..+..... +......+- . .. ..++ .++ .....|.|+.+|+.++|
T Consensus 160 --~~~~i~dl~~~~~~~~-~~~~~~~~~---~-~~-------~~~~-------~d~-------~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 160 --RLVLHNDLIRSRLAYA-LFWAGTRLL---S-RS-------SFVH-------TDG-------LLSVRRSYTPAELAALA 211 (232)
T ss_pred --eeEEEeccccCHHHHH-HHHHHHHHh---c-cC-------ceee-------ccc-------hHHHHhhcCHHHHHHHh
Confidence 8888889875421111 000000000 0 00 0000 011 11123899999999999
Q ss_pred HHcCCcEEEEEe
Q 045407 348 EEAGFRSVHFWL 359 (382)
Q Consensus 348 eeAGF~~V~v~~ 359 (382)
++ ||+.+..|+
T Consensus 212 ~~-Gf~~~~~~~ 222 (232)
T PRK06202 212 PQ-GWRVERQWP 222 (232)
T ss_pred hC-CCeEEeccc
Confidence 99 999888774
No 20
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.57 E-value=2.3e-14 Score=122.24 Aligned_cols=139 Identities=21% Similarity=0.265 Sum_probs=97.3
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||+|.++..|++.|. +++|+|+|+.|+++ .+ .....+... .+.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~---~~---------~~~~~~~~~--~~~------------ 73 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK---RN---------VVFDNFDAQ--DPP------------ 73 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH---TT---------SEEEEEECH--THH------------
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh---hh---------hhhhhhhhh--hhh------------
Confidence 356799999999999999999986 79999999999988 21 112222222 221
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+....||+|+|+ .++.|+. +...+++++++.|+ |||+
T Consensus 74 --------------------------------------~~~~~fD~i~~~-~~l~~~~---d~~~~l~~l~~~Lk-pgG~ 110 (161)
T PF13489_consen 74 --------------------------------------FPDGSFDLIICN-DVLEHLP---DPEEFLKELSRLLK-PGGY 110 (161)
T ss_dssp --------------------------------------CHSSSEEEEEEE-SSGGGSS---HHHHHHHHHHHCEE-EEEE
T ss_pred --------------------------------------ccccchhhHhhH-HHHhhcc---cHHHHHHHHHHhcC-CCCE
Confidence 114679999999 5888887 57899999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
+++.......... +.+.. |.. .. + .+ -+...|++.+|+.+|++|||
T Consensus 111 l~~~~~~~~~~~~-----~~~~~----~~~-~~-~--------------~~---------~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 111 LVISDPNRDDPSP-----RSFLK----WRY-DR-P--------------YG---------GHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp EEEEEEBTTSHHH-----HHHHH----CCG-TC-H--------------HT---------TTTEEBBHHHHHHHHHHTTE
T ss_pred EEEEEcCCcchhh-----hHHHh----cCC-cC-c--------------cC---------ceeccCCHHHHHHHHHHCCC
Confidence 9997765322111 00001 221 00 0 00 11268899999999999999
Q ss_pred cEEE
Q 045407 353 RSVH 356 (382)
Q Consensus 353 ~~V~ 356 (382)
+.|+
T Consensus 157 ~iv~ 160 (161)
T PF13489_consen 157 EIVE 160 (161)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 21
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.56 E-value=1.4e-13 Score=133.11 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=83.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..++++.+..+|+++|+ ++|++.|+++... .+ -..||.++++|+.+.+
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~g--l~~rv~~~~~d~~~~~------------- 212 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE-KG--VADRMRGIAVDIYKES------------- 212 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh-CC--ccceEEEEecCccCCC-------------
Confidence 46899999999999999999999889999998 7899999987533 11 1248999999987544
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.+.+|+|+..+. .|..+.+.....|++++++|+ |||.+
T Consensus 213 ---------------------------------------~~~~D~v~~~~~--lh~~~~~~~~~il~~~~~~L~-pgG~l 250 (306)
T TIGR02716 213 ---------------------------------------YPEADAVLFCRI--LYSANEQLSTIMCKKAFDAMR-SGGRL 250 (306)
T ss_pred ---------------------------------------CCCCCEEEeEhh--hhcCChHHHHHHHHHHHHhcC-CCCEE
Confidence 345799876552 233355677899999999999 99999
Q ss_pred EE-ecc
Q 045407 274 VM-DLY 278 (382)
Q Consensus 274 Vf-Dl~ 278 (382)
++ |+.
T Consensus 251 ~i~d~~ 256 (306)
T TIGR02716 251 LILDMV 256 (306)
T ss_pred EEEEec
Confidence 76 753
No 22
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.55 E-value=3e-14 Score=133.20 Aligned_cols=102 Identities=15% Similarity=0.219 Sum_probs=82.1
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..+.+|||+|||||.++..|++.| .+|+|+|+|++||+.|+++.. .+.++++|+..++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~~----------- 98 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESLP----------- 98 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccCc-----------
Confidence 345689999999999999999887 479999999999999998741 2467899987655
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+....||+|++.. ++.|+. ++..+|++++++|+ |||
T Consensus 99 ---------------------------------------~~~~~fD~V~s~~-~l~~~~---d~~~~l~~~~~~Lk-~gG 134 (251)
T PRK10258 99 ---------------------------------------LATATFDLAWSNL-AVQWCG---NLSTALRELYRVVR-PGG 134 (251)
T ss_pred ---------------------------------------CCCCcEEEEEECc-hhhhcC---CHHHHHHHHHHHcC-CCe
Confidence 1245799999764 565544 56788999999999 999
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
+|+|=..+
T Consensus 135 ~l~~~~~~ 142 (251)
T PRK10258 135 VVAFTTLV 142 (251)
T ss_pred EEEEEeCC
Confidence 99996554
No 23
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.54 E-value=5.1e-14 Score=143.48 Aligned_cols=147 Identities=14% Similarity=0.199 Sum_probs=105.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||+|.++..+++.. ..+|+|+|+|++||+.|+++... ...++.++++|+.+++
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~~------------- 327 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKKT------------- 327 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccCC-------------
Confidence 4589999999999999998864 35899999999999999987521 2247999999987765
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
++..+||+|+|.. ++.|+.+ ...+|+.++++|+ |||.|
T Consensus 328 -------------------------------------~~~~~fD~I~s~~-~l~h~~d---~~~~l~~~~r~Lk-pgG~l 365 (475)
T PLN02336 328 -------------------------------------YPDNSFDVIYSRD-TILHIQD---KPALFRSFFKWLK-PGGKV 365 (475)
T ss_pred -------------------------------------CCCCCEEEEEECC-cccccCC---HHHHHHHHHHHcC-CCeEE
Confidence 1245799999975 6777764 4678999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
++.-+.-.... +.- .|.. .+. ...+.++++.++.++|++|||.
T Consensus 366 ~i~~~~~~~~~---------~~~--~~~~-----------------------~~~---~~g~~~~~~~~~~~~l~~aGF~ 408 (475)
T PLN02336 366 LISDYCRSPGT---------PSP--EFAE-----------------------YIK---QRGYDLHDVQAYGQMLKDAGFD 408 (475)
T ss_pred EEEEeccCCCC---------CcH--HHHH-----------------------HHH---hcCCCCCCHHHHHHHHHHCCCe
Confidence 98433100000 000 0000 000 0112578999999999999999
Q ss_pred EEEEE
Q 045407 354 SVHFW 358 (382)
Q Consensus 354 ~V~v~ 358 (382)
.+.+.
T Consensus 409 ~i~~~ 413 (475)
T PLN02336 409 DVIAE 413 (475)
T ss_pred eeeee
Confidence 98663
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.54 E-value=3.6e-14 Score=123.30 Aligned_cols=106 Identities=19% Similarity=0.300 Sum_probs=83.1
Q ss_pred CCcccccCCCccHhHHHHH-HhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWL-RSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~ela-r~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..|+ +.++..+++|||+|++||+.|+++... .+..++.|+++|+.+++.
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~----~~~~ni~~~~~d~~~l~~----------- 68 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE----LGLDNIEFIQGDIEDLPQ----------- 68 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH----TTSTTEEEEESBTTCGCG-----------
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc----ccccccceEEeehhcccc-----------
Confidence 4579999999999999999 567778999999999999999997432 233479999999988541
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. +. ..||+|++.... .++ .+....|+.+.+.|+ +||+
T Consensus 69 ------------------------------------~-~~-~~~D~I~~~~~l-~~~---~~~~~~l~~~~~~lk-~~G~ 105 (152)
T PF13847_consen 69 ------------------------------------E-LE-EKFDIIISNGVL-HHF---PDPEKVLKNIIRLLK-PGGI 105 (152)
T ss_dssp ------------------------------------C-SS-TTEEEEEEESTG-GGT---SHHHHHHHHHHHHEE-EEEE
T ss_pred ------------------------------------c-cC-CCeeEEEEcCch-hhc---cCHHHHHHHHHHHcC-CCcE
Confidence 0 11 679999998633 443 455688999999999 8999
Q ss_pred EEEec
Q 045407 273 FVMDL 277 (382)
Q Consensus 273 FVfDl 277 (382)
|++-.
T Consensus 106 ~i~~~ 110 (152)
T PF13847_consen 106 LIISD 110 (152)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99843
No 25
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.54 E-value=4.8e-14 Score=140.76 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=81.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++.-+..+|+|+|+|++||+.|+++.. ..++.++++|+.+++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~lp------------- 173 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDLP------------- 173 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhCC-------------
Confidence 357999999999999999987544689999999999999998741 136889999987655
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+....||+|++. .+++|+.+. ...|++++++|+ |||.|
T Consensus 174 -------------------------------------~~~~sFDvVIs~-~~L~~~~d~---~~~L~e~~rvLk-PGG~L 211 (340)
T PLN02490 174 -------------------------------------FPTDYADRYVSA-GSIEYWPDP---QRGIKEAYRVLK-IGGKA 211 (340)
T ss_pred -------------------------------------CCCCceeEEEEc-ChhhhCCCH---HHHHHHHHHhcC-CCcEE
Confidence 124579999986 477777654 468999999999 99999
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 212 vI 213 (340)
T PLN02490 212 CL 213 (340)
T ss_pred EE
Confidence 77
No 26
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.53 E-value=1.4e-13 Score=130.33 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=104.1
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||..+..+++. ++..+|+|+|+|++||++|+++... .+..++.++++|+.+++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~----~g~~~v~~~~~d~~~l~------------ 141 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK----AGYTNVEFRLGEIEALP------------ 141 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH----cCCCCEEEEEcchhhCC------------
Confidence 357999999999988877765 5656799999999999999987422 12347899999986655
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ ....||+|++.+ +++++. +...+|+.++++|+ |||+
T Consensus 142 -----~---------------------------------~~~~fD~Vi~~~-v~~~~~---d~~~~l~~~~r~Lk-pGG~ 178 (272)
T PRK11873 142 -----V---------------------------------ADNSVDVIISNC-VINLSP---DKERVFKEAFRVLK-PGGR 178 (272)
T ss_pred -----C---------------------------------CCCceeEEEEcC-cccCCC---CHHHHHHHHHHHcC-CCcE
Confidence 1 245799998764 455443 45678999999999 9999
Q ss_pred EEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 273 FVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 273 FVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
|++ |+.........+. . ... +|. .+.-..++..++.++|+++|
T Consensus 179 l~i~~~~~~~~~~~~~~--~---~~~-~~~------------------------------~~~~~~~~~~e~~~~l~~aG 222 (272)
T PRK11873 179 FAISDVVLRGELPEEIR--N---DAE-LYA------------------------------GCVAGALQEEEYLAMLAEAG 222 (272)
T ss_pred EEEEEeeccCCCCHHHH--H---hHH-HHh------------------------------ccccCCCCHHHHHHHHHHCC
Confidence 998 5543211100000 0 000 010 00113567889999999999
Q ss_pred CcEEEEEe
Q 045407 352 FRSVHFWL 359 (382)
Q Consensus 352 F~~V~v~~ 359 (382)
|..+.+..
T Consensus 223 f~~v~i~~ 230 (272)
T PRK11873 223 FVDITIQP 230 (272)
T ss_pred CCceEEEe
Confidence 99988743
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.52 E-value=7.9e-14 Score=127.35 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=78.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|.+|||+|||||.++..++++|. +|+|+|+|+.||++|+++... .+..+.+.++|+..++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~-----~~~~v~~~~~d~~~~~------------- 90 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKAR-----ENLPLRTDAYDINAAA------------- 90 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHH-----hCCCceeEeccchhcc-------------
Confidence 56899999999999999999985 799999999999999887422 1224667777764433
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ .+.||+|++.. ++.+++ .+++..+++.++++|+ |||+|
T Consensus 91 ----~----------------------------------~~~fD~I~~~~-~~~~~~-~~~~~~~l~~~~~~Lk-pgG~l 129 (195)
T TIGR00477 91 ----L----------------------------------NEDYDFIFSTV-VFMFLQ-AGRVPEIIANMQAHTR-PGGYN 129 (195)
T ss_pred ----c----------------------------------cCCCCEEEEec-ccccCC-HHHHHHHHHHHHHHhC-CCcEE
Confidence 1 34699998865 455554 4688999999999999 99985
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 130 li 131 (195)
T TIGR00477 130 LI 131 (195)
T ss_pred EE
Confidence 44
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.52 E-value=1.8e-13 Score=125.20 Aligned_cols=141 Identities=20% Similarity=0.228 Sum_probs=102.7
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+|||+|||+|.++..+++..+..+|+|+|+|++|+++|+++... .+ -..+++++++|+...+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~-~g--l~~~i~~~~~d~~~~~--------------- 63 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRA-LG--LQGRIRIFYRDSAKDP--------------- 63 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-cC--CCcceEEEecccccCC---------------
Confidence 58999999999999999987667899999999999999997532 11 1247899999974433
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+ .++||+|++.+ ++.++. +...+|+.+++.|+ |||+|++
T Consensus 64 --~----------------------------------~~~fD~I~~~~-~l~~~~---~~~~~l~~~~~~Lk-pgG~l~i 102 (224)
T smart00828 64 --F----------------------------------PDTYDLVFGFE-VIHHIK---DKMDLFSNISRHLK-DGGHLVL 102 (224)
T ss_pred --C----------------------------------CCCCCEeehHH-HHHhCC---CHHHHHHHHHHHcC-CCCEEEE
Confidence 1 34699999865 555554 46789999999999 9999998
Q ss_pred -eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcE
Q 045407 276 -DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRS 354 (382)
Q Consensus 276 -Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~ 354 (382)
|+.. +. |.. ... . ... ..+++..++.++|+++||+.
T Consensus 103 ~~~~~---------------~~---~~~-----~~~------------~--~~~------~~~~s~~~~~~~l~~~Gf~~ 139 (224)
T smart00828 103 ADFIA---------------NL---LSA-----IEH------------E--ETT------SYLVTREEWAELLARNNLRV 139 (224)
T ss_pred EEccc---------------cc---Ccc-----ccc------------c--ccc------cccCCHHHHHHHHHHCCCeE
Confidence 3321 00 110 000 0 000 01678999999999999999
Q ss_pred EEEE
Q 045407 355 VHFW 358 (382)
Q Consensus 355 V~v~ 358 (382)
+.+.
T Consensus 140 ~~~~ 143 (224)
T smart00828 140 VEGV 143 (224)
T ss_pred EEeE
Confidence 8763
No 29
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.50 E-value=2.5e-13 Score=122.25 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 98 ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 98 i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
..+...++.. .....+.+|||+|||+|.++..|++.++. .+++|+|+++.++++|+++.. ...++.++++|+
T Consensus 25 ~~~~~~~~~~-~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~------~~~~i~~~~~d~ 97 (223)
T TIGR01934 25 RLWRRRAVKL-IGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE------LPLNIEFIQADA 97 (223)
T ss_pred HHHHHHHHHH-hccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc------cCCCceEEecch
Confidence 3444444443 22234578999999999999999999874 589999999999999998742 234789999998
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHH
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLV 256 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~ 256 (382)
.+.+ +..++||+|++.. ++.+ ..+..
T Consensus 98 ~~~~--------------------------------------------------~~~~~~D~i~~~~-~~~~---~~~~~ 123 (223)
T TIGR01934 98 EALP--------------------------------------------------FEDNSFDAVTIAF-GLRN---VTDIQ 123 (223)
T ss_pred hcCC--------------------------------------------------CCCCcEEEEEEee-eeCC---cccHH
Confidence 7654 1235799998754 3333 35677
Q ss_pred HHHHHHHhhccCCCcEEEE-ecc
Q 045407 257 LYFKHVLHALSKKGGIFVM-DLY 278 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVf-Dl~ 278 (382)
..++.+++.|+ |||+|++ +..
T Consensus 124 ~~l~~~~~~L~-~gG~l~~~~~~ 145 (223)
T TIGR01934 124 KALREMYRVLK-PGGRLVILEFS 145 (223)
T ss_pred HHHHHHHHHcC-CCcEEEEEEec
Confidence 89999999999 9999987 443
No 30
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.50 E-value=5.6e-13 Score=122.49 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=103.1
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.+.+|||+|||||.++..|++.+. +|+|+|+|++|++.|+++..... ...++.+.++|+.+++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~------------ 117 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSLC------------ 117 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhCC------------
Confidence 356899999999999999998874 79999999999999999863311 1136889998874432
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
++||+|++.+ ++.|+. ++++...++++++.++ +|++
T Consensus 118 -----------------------------------------~~fD~ii~~~-~l~~~~-~~~~~~~l~~i~~~~~-~~~~ 153 (219)
T TIGR02021 118 -----------------------------------------GEFDIVVCMD-VLIHYP-ASDMAKALGHLASLTK-ERVI 153 (219)
T ss_pred -----------------------------------------CCcCEEEEhh-HHHhCC-HHHHHHHHHHHHHHhC-CCEE
Confidence 5699999875 555554 4678899999998887 6666
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCC
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF 352 (382)
+.+ .+.+.... ..+.... .|.. .. ....++.+++++++.+|+++||
T Consensus 154 i~~--~~~~~~~~---~~~~~~~---~~~~--------------------~~------~~~~~~~~~~~~~~~~l~~~Gf 199 (219)
T TIGR02021 154 FTF--APKTAWLA---FLKMIGE---LFPG--------------------SS------RATSAYLHPMTDLERALGELGW 199 (219)
T ss_pred EEE--CCCchHHH---HHHHHHh---hCcC--------------------cc------cccceEEecHHHHHHHHHHcCc
Confidence 554 22222111 1110000 0110 00 0112457899999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
+.+++-
T Consensus 200 ~v~~~~ 205 (219)
T TIGR02021 200 KIVREG 205 (219)
T ss_pred eeeeee
Confidence 998863
No 31
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=3.5e-13 Score=124.83 Aligned_cols=120 Identities=10% Similarity=0.132 Sum_probs=93.2
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG 174 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g 174 (382)
...+.++.+++.. . ..+..|||+|||||.++..|++..+..+++|||+|++||+.|+++. .++.++++
T Consensus 28 ~~~~~~~~~~l~~-~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~ 95 (204)
T TIGR03587 28 AAKLAMFARALNR-L--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQG 95 (204)
T ss_pred HHHHHHHHHHHHh-c--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEe
Confidence 3455677777654 2 2255799999999999999998844468999999999999999874 14678899
Q ss_pred cCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH
Q 045407 175 NVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD 254 (382)
Q Consensus 175 DV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d 254 (382)
|+.++. ...+||+|++. .++.|+. +++
T Consensus 96 d~~~~~---------------------------------------------------~~~sfD~V~~~-~vL~hl~-p~~ 122 (204)
T TIGR03587 96 SLFDPF---------------------------------------------------KDNFFDLVLTK-GVLIHIN-PDN 122 (204)
T ss_pred eccCCC---------------------------------------------------CCCCEEEEEEC-ChhhhCC-HHH
Confidence 987632 25679999974 5777774 789
Q ss_pred HHHHHHHHHhhccCCCcEEEEeccCCC
Q 045407 255 LVLYFKHVLHALSKKGGIFVMDLYGGT 281 (382)
Q Consensus 255 L~~yFr~V~~~L~~pGGiFVfDl~gg~ 281 (382)
+..+++.++++++ +-++|.++++..
T Consensus 123 ~~~~l~el~r~~~--~~v~i~e~~~~~ 147 (204)
T TIGR03587 123 LPTAYRELYRCSN--RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHhhcC--cEEEEEEeeCCC
Confidence 9999999999986 677777887543
No 32
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.48 E-value=4.2e-13 Score=122.00 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||+|.++..|++.++ ..+++|+|+|+.|++.|+++.... ....++.++++|+.++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~~~~~~~~~~d~~~~~------------ 116 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL---GLSGNVEFVQGDAEALP------------ 116 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc---ccccCeEEEecccccCC------------
Confidence 46899999999999999999886 468999999999999999975221 01246889999986654
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+..+.||+|++.+ ++.+ ..++...++.++..|+ |||+
T Consensus 117 --------------------------------------~~~~~~D~I~~~~-~l~~---~~~~~~~l~~~~~~L~-~gG~ 153 (239)
T PRK00216 117 --------------------------------------FPDNSFDAVTIAF-GLRN---VPDIDKALREMYRVLK-PGGR 153 (239)
T ss_pred --------------------------------------CCCCCccEEEEec-cccc---CCCHHHHHHHHHHhcc-CCcE
Confidence 1245799998754 3333 3567788999999999 9998
Q ss_pred EEE-ecc
Q 045407 273 FVM-DLY 278 (382)
Q Consensus 273 FVf-Dl~ 278 (382)
+++ ++.
T Consensus 154 li~~~~~ 160 (239)
T PRK00216 154 LVILEFS 160 (239)
T ss_pred EEEEEec
Confidence 876 654
No 33
>PRK08317 hypothetical protein; Provisional
Probab=99.47 E-value=3.8e-13 Score=121.28 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=83.8
Q ss_pred hCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhccc
Q 045407 109 VGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 109 ~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
..-..+.+|||+|||||.++..+++.. +..+|+|+|+|+.+++.|+++. . ....++.++++|+.+++
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~-~----~~~~~~~~~~~d~~~~~------- 82 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA-A----GLGPNVEFVRGDADGLP------- 82 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHh-h----CCCCceEEEecccccCC-------
Confidence 333335689999999999999999875 5568999999999999999872 1 12347889999986554
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
+..++||+|++.+ ++.++. +...+|+++++.|+
T Consensus 83 -------------------------------------------~~~~~~D~v~~~~-~~~~~~---~~~~~l~~~~~~L~ 115 (241)
T PRK08317 83 -------------------------------------------FPDGSFDAVRSDR-VLQHLE---DPARALAEIARVLR 115 (241)
T ss_pred -------------------------------------------CCCCCceEEEEec-hhhccC---CHHHHHHHHHHHhc
Confidence 1246799999875 555554 45778999999999
Q ss_pred CCCcEEEEe
Q 045407 268 KKGGIFVMD 276 (382)
Q Consensus 268 ~pGGiFVfD 276 (382)
|||.+++-
T Consensus 116 -~gG~l~~~ 123 (241)
T PRK08317 116 -PGGRVVVL 123 (241)
T ss_pred -CCcEEEEE
Confidence 99999874
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=3.2e-13 Score=126.58 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++..+..+|+|||+|+.|++.|+++. .++.++.+|+.++.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~------------- 89 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ------------- 89 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC-------------
Confidence 46899999999999999999876678999999999999999874 25788999986543
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ..+||+|++.. ++.|+.+ ...+|+.++++|+ |||+|
T Consensus 90 ----~----------------------------------~~~fD~v~~~~-~l~~~~d---~~~~l~~~~~~Lk-pgG~~ 126 (258)
T PRK01683 90 ----P----------------------------------PQALDLIFANA-SLQWLPD---HLELFPRLVSLLA-PGGVL 126 (258)
T ss_pred ----C----------------------------------CCCccEEEEcc-ChhhCCC---HHHHHHHHHHhcC-CCcEE
Confidence 1 35799999864 7777654 5689999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++-+-
T Consensus 127 ~~~~~ 131 (258)
T PRK01683 127 AVQMP 131 (258)
T ss_pred EEECC
Confidence 99653
No 35
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.46 E-value=8.7e-15 Score=117.92 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=62.5
Q ss_pred cccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccc
Q 045407 118 QEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNIS 197 (382)
Q Consensus 118 LEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~ 197 (382)
||+|||||.++..+++..+..+++|+|+|+.||+.|+++... ........+..+..+...
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~----~~~~~~~~~~~~~~~~~~---------------- 60 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE----LGNDNFERLRFDVLDLFD---------------- 60 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH----CT---EEEEE--SSS-------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh----cCCcceeEEEeecCChhh----------------
Confidence 699999999999999996667899999999999887777533 222234445444443331
Q ss_pred cccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 198 LEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ....+||+|++.+ ++.|+ +++..+++++++.|+ |||+|
T Consensus 61 ~--------------------------------~~~~~fD~V~~~~-vl~~l---~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 61 Y--------------------------------DPPESFDLVVASN-VLHHL---EDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp C--------------------------------CC----SEEEEE--TTS-----S-HHHHHHHHTTT-T-SS-EE
T ss_pred c--------------------------------ccccccceehhhh-hHhhh---hhHHHHHHHHHHHcC-CCCCC
Confidence 0 0024899999995 77777 688899999999999 99986
No 36
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.45 E-value=3.3e-12 Score=126.28 Aligned_cols=103 Identities=9% Similarity=0.050 Sum_probs=73.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC-CCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA-DGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~-d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+.+|||+|||||.++..|++.|. +|+|+|+|+.||++|+++....... .+..++.|.++|+.++
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------------- 209 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------------- 209 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-------------
Confidence 45799999999999999999984 7999999999999999985331100 0123577888886432
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+.||+|+|+. ++.|+.+ +.+...++++.. |. +||+
T Consensus 210 ----------------------------------------~~~fD~Vv~~~-vL~H~p~-~~~~~ll~~l~~-l~-~g~l 245 (315)
T PLN02585 210 ----------------------------------------SGKYDTVTCLD-VLIHYPQ-DKADGMIAHLAS-LA-EKRL 245 (315)
T ss_pred ----------------------------------------CCCcCEEEEcC-EEEecCH-HHHHHHHHHHHh-hc-CCEE
Confidence 25699999875 4444443 455667777764 56 6777
Q ss_pred EEE
Q 045407 273 FVM 275 (382)
Q Consensus 273 FVf 275 (382)
+|.
T Consensus 246 iIs 248 (315)
T PLN02585 246 IIS 248 (315)
T ss_pred EEE
Confidence 664
No 37
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.44 E-value=2.3e-12 Score=105.59 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=79.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|+|+|||+|.++..++++.+..+|+|+|+|+.|+++|+++... . +..++.++.+|+.....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~---~~~~~~~~~~~~~~~~~------------- 83 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR-F---GVSNIVIVEGDAPEALE------------- 83 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH-h---CCCceEEEeccccccCh-------------
Confidence 479999999999999999987657899999999999999987422 1 12368888888654220
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
...++||+|++... ......+++.+++.|+ |||.|+
T Consensus 84 ------------------------------------~~~~~~D~v~~~~~-------~~~~~~~l~~~~~~Lk-~gG~li 119 (124)
T TIGR02469 84 ------------------------------------DSLPEPDRVFIGGS-------GGLLQEILEAIWRRLR-PGGRIV 119 (124)
T ss_pred ------------------------------------hhcCCCCEEEECCc-------chhHHHHHHHHHHHcC-CCCEEE
Confidence 00357999998541 2345689999999999 999999
Q ss_pred Eecc
Q 045407 275 MDLY 278 (382)
Q Consensus 275 fDl~ 278 (382)
+.++
T Consensus 120 ~~~~ 123 (124)
T TIGR02469 120 LNAI 123 (124)
T ss_pred EEec
Confidence 9875
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=4.6e-13 Score=129.05 Aligned_cols=101 Identities=16% Similarity=0.082 Sum_probs=81.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|.+|||+|||+|+++..+++.|. +|+|+|+|+.||+.|+++... .+.++.+..+|+..+.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~-----~~l~v~~~~~D~~~~~------------- 180 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEK-----ENLNIRTGLYDINSAS------------- 180 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHH-----cCCceEEEEechhccc-------------
Confidence 45799999999999999999985 799999999999999987532 1236888888875544
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+ .+.||+|++.. ++.++ +++++..+++.+.++|+ |||++
T Consensus 181 ----~----------------------------------~~~fD~I~~~~-vl~~l-~~~~~~~~l~~~~~~Lk-pgG~~ 219 (287)
T PRK12335 181 ----I----------------------------------QEEYDFILSTV-VLMFL-NRERIPAIIKNMQEHTN-PGGYN 219 (287)
T ss_pred ----c----------------------------------cCCccEEEEcc-hhhhC-CHHHHHHHHHHHHHhcC-CCcEE
Confidence 1 35799999986 55554 56789999999999999 99996
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
++
T Consensus 220 l~ 221 (287)
T PRK12335 220 LI 221 (287)
T ss_pred EE
Confidence 65
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.42 E-value=1.2e-12 Score=120.34 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=81.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++..+..+|+|+|+|++|+++|+++... . +..++.++++|+.++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~-~---~l~~i~~~~~d~~~~~------------- 108 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE-L---GLKNVTVVHGRAEEFG------------- 108 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-c---CCCCEEEEeccHhhCC-------------
Confidence 4579999999999999999877778999999999999999987533 2 2235999999986654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. .++||+|+|.. + ..+..+++.+++.|+ |||+|
T Consensus 109 -------------------------------------~-~~~fDlV~~~~-----~---~~~~~~l~~~~~~Lk-pGG~l 141 (187)
T PRK00107 109 -------------------------------------Q-EEKFDVVTSRA-----V---ASLSDLVELCLPLLK-PGGRF 141 (187)
T ss_pred -------------------------------------C-CCCccEEEEcc-----c---cCHHHHHHHHHHhcC-CCeEE
Confidence 1 35799999854 1 356778999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++-..
T Consensus 142 v~~~~ 146 (187)
T PRK00107 142 LALKG 146 (187)
T ss_pred EEEeC
Confidence 99654
No 40
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.42 E-value=6.8e-13 Score=120.84 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=79.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++.++..+|+|||+|++|++.|+++... . +..++.++++|+.++.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~-~---~~~~i~~i~~d~~~~~------------- 105 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE-L---GLNNVEIVNGRAEDFQ------------- 105 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-h---CCCCeEEEecchhhcc-------------
Confidence 4579999999999999999988778899999999999999887422 2 2236999999986643
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. .++||+|+|.. ++ ++...++.+++.|+ |||+|
T Consensus 106 ----~----------------------------------~~~fD~I~s~~-----~~---~~~~~~~~~~~~Lk-pgG~l 138 (181)
T TIGR00138 106 ----H----------------------------------EEQFDVITSRA-----LA---SLNVLLELTLNLLK-VGGYF 138 (181)
T ss_pred ----c----------------------------------cCCccEEEehh-----hh---CHHHHHHHHHHhcC-CCCEE
Confidence 1 36799998853 33 34557788899999 99999
Q ss_pred EEec
Q 045407 274 VMDL 277 (382)
Q Consensus 274 VfDl 277 (382)
++-.
T Consensus 139 vi~~ 142 (181)
T TIGR00138 139 LAYK 142 (181)
T ss_pred EEEc
Confidence 9864
No 41
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.41 E-value=7.5e-13 Score=128.32 Aligned_cols=170 Identities=16% Similarity=0.201 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhCCCCC-------CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCC--Ccc
Q 045407 98 ISYLQKFFLIYVGGRQP-------LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADG--YSR 168 (382)
Q Consensus 98 i~yl~~~f~~y~ggr~p-------~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~--~~R 168 (382)
..|+..-+++.+....| ..|||.|||||+||..|||.|. +|+|||++.+|++.|+++.-......+ .-|
T Consensus 67 l~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~ 144 (282)
T KOG1270|consen 67 LPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPVLEGAIAYR 144 (282)
T ss_pred hhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCchhcccccee
Confidence 35666666554422222 3599999999999999999995 799999999999999999322100000 115
Q ss_pred eEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc
Q 045407 169 ISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC 248 (382)
Q Consensus 169 I~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y 248 (382)
+++.+.++.... +.||+|+|+-- +-+
T Consensus 145 l~~~~~~~E~~~-----------------------------------------------------~~fDaVvcsev-leH 170 (282)
T KOG1270|consen 145 LEYEDTDVEGLT-----------------------------------------------------GKFDAVVCSEV-LEH 170 (282)
T ss_pred eehhhcchhhcc-----------------------------------------------------cccceeeeHHH-HHH
Confidence 777777664332 55999999973 332
Q ss_pred cCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeeccccee
Q 045407 249 LHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKL 327 (382)
Q Consensus 249 L~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~l 327 (382)
-+++...+++..+.|+ |||.+++ +++-+-.+ .+++ +| ..++..+. +++|.
T Consensus 171 ---V~dp~~~l~~l~~~lk-P~G~lfittinrt~lS--------~~~~---i~---~~E~vl~i--------vp~Gt--- 221 (282)
T KOG1270|consen 171 ---VKDPQEFLNCLSALLK-PNGRLFITTINRTILS--------FAGT---IF---LAEIVLRI--------VPKGT--- 221 (282)
T ss_pred ---HhCHHHHHHHHHHHhC-CCCceEeeehhhhHHH--------hhcc---cc---HHHHHHHh--------cCCCC---
Confidence 3677888899999999 7777666 66521111 0011 11 11121121 23332
Q ss_pred eeeeeeeE-EecCHHHHHHHHHHcCCcEEEE
Q 045407 328 RHAFSYNW-RLWSLPEIKDCLEEAGFRSVHF 357 (382)
Q Consensus 328 r~~fsy~~-Rlysl~EI~d~LeeAGF~~V~v 357 (382)
|+| ..-++.|+..+|+.+|+....+
T Consensus 222 -----h~~ekfi~p~e~~~~l~~~~~~v~~v 247 (282)
T KOG1270|consen 222 -----HTWEKFINPEELTSILNANGAQVNDV 247 (282)
T ss_pred -----cCHHHcCCHHHHHHHHHhcCcchhhh
Confidence 444 5668999999999999966554
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.41 E-value=1.6e-12 Score=124.86 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=84.4
Q ss_pred CCCcccccCCCccH----hHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHhccc-----ccc----------CC----
Q 045407 113 QPLHLQEDFCGTAL----LSTEWLRSDS-----RRTAVGLDLDLEALEWCMENNLN-----KVG----------AD---- 164 (382)
Q Consensus 113 ~p~~LLEl~CGTG~----LS~elar~g~-----~~tVvGVDLS~emL~~A~e~~~~-----kl~----------~d---- 164 (382)
.+.+|++.|||||. |++.+++.++ ..+|+|+|+|+.||+.|++.... .+. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 36789999999996 7777777654 36899999999999999986321 000 00
Q ss_pred ----CCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 165 ----GYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 165 ----~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
-..+|.|.++|+.+++ +..++||+|+
T Consensus 179 v~~~ir~~V~F~~~dl~~~~--------------------------------------------------~~~~~fD~I~ 208 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES--------------------------------------------------PPLGDFDLIF 208 (264)
T ss_pred EChHHhCcCEEeeccCCCCC--------------------------------------------------CccCCCCEEE
Confidence 0135788888887655 1246799999
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
|-| ++.||. .++..+++++++++|+ |||++++-
T Consensus 209 crn-vl~yf~-~~~~~~~l~~l~~~L~-pGG~L~lg 241 (264)
T smart00138 209 CRN-VLIYFD-EPTQRKLLNRFAEALK-PGGYLFLG 241 (264)
T ss_pred ech-hHHhCC-HHHHHHHHHHHHHHhC-CCeEEEEE
Confidence 976 888885 4678899999999999 99999994
No 43
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.41 E-value=9.5e-13 Score=119.18 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=85.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
|.+|||+|||+|.++..|++.++..+++|+|+|++|++.|+++.. .++.++++|+.+.+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~------------- 93 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP------------- 93 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-------------
Confidence 578999999999999999999988889999999999999988742 26889999986655
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+..+.||+|++.. ++.|+. +...+++++++.|+ |||+|
T Consensus 94 -------------------------------------~~~~~fD~vi~~~-~l~~~~---~~~~~l~~~~~~L~-~~G~l 131 (240)
T TIGR02072 94 -------------------------------------LEDSSFDLIVSNL-ALQWCD---DLSQALSELARVLK-PGGLL 131 (240)
T ss_pred -------------------------------------CCCCceeEEEEhh-hhhhcc---CHHHHHHHHHHHcC-CCcEE
Confidence 1246799999864 555554 56789999999999 99999
Q ss_pred EEeccC
Q 045407 274 VMDLYG 279 (382)
Q Consensus 274 VfDl~g 279 (382)
++-..+
T Consensus 132 ~~~~~~ 137 (240)
T TIGR02072 132 AFSTFG 137 (240)
T ss_pred EEEeCC
Confidence 996654
No 44
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.40 E-value=3.1e-12 Score=119.61 Aligned_cols=125 Identities=17% Similarity=0.139 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccc--------cCCCCcceE
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKV--------GADGYSRIS 170 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl--------~~d~~~RI~ 170 (382)
.+|.+++.... .....++|++|||+|+.+..||++|. +|+|||+|+.+|++|.+++.-.. ......+|.
T Consensus 21 ~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 21 PLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred HHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 35555554321 11124699999999999999999996 69999999999999765432100 001235799
Q ss_pred EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC
Q 045407 171 LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH 250 (382)
Q Consensus 171 l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~ 250 (382)
++++|+.+++. ...++||+|.... ++++|
T Consensus 98 ~~~~D~~~~~~-------------------------------------------------~~~~~fD~i~D~~-~~~~l- 126 (213)
T TIGR03840 98 IFCGDFFALTA-------------------------------------------------ADLGPVDAVYDRA-ALIAL- 126 (213)
T ss_pred EEEccCCCCCc-------------------------------------------------ccCCCcCEEEech-hhccC-
Confidence 99999987661 0035799998753 55566
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
.++.-..|++.+.++|+ |||++++-.+
T Consensus 127 ~~~~R~~~~~~l~~lLk-pgG~~ll~~~ 153 (213)
T TIGR03840 127 PEEMRQRYAAHLLALLP-PGARQLLITL 153 (213)
T ss_pred CHHHHHHHHHHHHHHcC-CCCeEEEEEE
Confidence 46777889999999999 9998777443
No 45
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.40 E-value=2.5e-12 Score=118.64 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=104.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|.++..+++.+. +++|+|+++.++..|+++... ...++.++++|+.+...
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~------------ 109 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALE-----SGLKIDYRQTTAEELAA------------ 109 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHH-----cCCceEEEecCHHHhhh------------
Confidence 45799999999999999999875 699999999999999987422 11357788877754430
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...++||+|++.+ ++.++.+ ....++.+.+.|+ |||+|
T Consensus 110 -------------------------------------~~~~~fD~Ii~~~-~l~~~~~---~~~~l~~~~~~L~-~gG~l 147 (233)
T PRK05134 110 -------------------------------------EHPGQFDVVTCME-MLEHVPD---PASFVRACAKLVK-PGGLV 147 (233)
T ss_pred -------------------------------------hcCCCccEEEEhh-HhhccCC---HHHHHHHHHHHcC-CCcEE
Confidence 0135799999864 5555554 4567899999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeee-EEecCHHHHHHHHHHcCC
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYN-WRLWSLPEIKDCLEEAGF 352 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~-~Rlysl~EI~d~LeeAGF 352 (382)
++...+.+........ ....+++.. . ... ... -+.++..++.++|+++||
T Consensus 148 ~v~~~~~~~~~~~~~~----~~~~~~~~~----------------~-~~~--------~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 148 FFSTLNRNLKSYLLAI----VGAEYVLRM----------------L-PKG--------THDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred EEEecCCChHHHHHHH----hhHHHHhhh----------------c-Ccc--------cCchhhcCCHHHHHHHHHHCCC
Confidence 9976543322111000 000111110 0 000 011 267899999999999999
Q ss_pred cEEEEE
Q 045407 353 RSVHFW 358 (382)
Q Consensus 353 ~~V~v~ 358 (382)
..+.++
T Consensus 199 ~~v~~~ 204 (233)
T PRK05134 199 EVQDIT 204 (233)
T ss_pred eEeeee
Confidence 999875
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.38 E-value=6.4e-12 Score=116.81 Aligned_cols=103 Identities=15% Similarity=0.023 Sum_probs=79.8
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.|..+||+|||.||.|..||++|+ +|+++|+|+.+|+.+.+.+.. ....|...+.|+.+..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~-----~~l~i~~~~~Dl~~~~------------ 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEE-----EGLDIRTRVADLNDFD------------ 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHH-----TT-TEEEEE-BGCCBS------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhh-----cCceeEEEEecchhcc------------
Confidence 366799999999999999999996 699999999999987665422 2356889999987766
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ ...||+|++. ..++||+ ++.....++++..+|+ |||+
T Consensus 91 -----~----------------------------------~~~yD~I~st-~v~~fL~-~~~~~~i~~~m~~~~~-pGG~ 128 (192)
T PF03848_consen 91 -----F----------------------------------PEEYDFIVST-VVFMFLQ-RELRPQIIENMKAATK-PGGY 128 (192)
T ss_dssp ----------------------------------------TTTEEEEEEE-SSGGGS--GGGHHHHHHHHHHTEE-EEEE
T ss_pred -----c----------------------------------cCCcCEEEEE-EEeccCC-HHHHHHHHHHHHhhcC-CcEE
Confidence 2 3569999874 3556655 6788999999999999 9999
Q ss_pred EEEe
Q 045407 273 FVMD 276 (382)
Q Consensus 273 FVfD 276 (382)
+++-
T Consensus 129 ~li~ 132 (192)
T PF03848_consen 129 NLIV 132 (192)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9984
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.38 E-value=8e-12 Score=113.99 Aligned_cols=178 Identities=18% Similarity=0.179 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 98 ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 98 i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
+.|+...+........+.+|||+|||||.++..+++.+. +++|+|+|+.|++.|+++... .+..++.+.++|+.
T Consensus 30 ~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~~~~d~~ 103 (224)
T TIGR01983 30 LDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKK----DPLLKIEYRCTSVE 103 (224)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHH----cCCCceEEEeCCHH
Confidence 466666665421012256799999999999999999875 599999999999999987432 11125788888875
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
+... ....+||+|++.+ ++.++. +...
T Consensus 104 ~~~~-------------------------------------------------~~~~~~D~i~~~~-~l~~~~---~~~~ 130 (224)
T TIGR01983 104 DLAE-------------------------------------------------KGAKSFDVVTCME-VLEHVP---DPQA 130 (224)
T ss_pred Hhhc-------------------------------------------------CCCCCccEEEehh-HHHhCC---CHHH
Confidence 5431 0025799999865 444444 5567
Q ss_pred HHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEe
Q 045407 258 YFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRL 337 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rl 337 (382)
.|+.+++.|+ +||.+++-..+.+...... ... ...+++.. ...+. . ..-+.
T Consensus 131 ~l~~~~~~L~-~gG~l~i~~~~~~~~~~~~---~~~-~~~~~~~~-----------------~~~~~-~------~~~~~ 181 (224)
T TIGR01983 131 FIRACAQLLK-PGGILFFSTINRTPKSYLL---AIV-GAEYILRI-----------------VPKGT-H------DWEKF 181 (224)
T ss_pred HHHHHHHhcC-CCcEEEEEecCCCchHHHH---HHH-hhhhhhhc-----------------CCCCc-C------Chhhc
Confidence 8999999999 9999988554322111000 000 00111110 00010 0 01146
Q ss_pred cCHHHHHHHHHHcCCcEEEEEeccCc
Q 045407 338 WSLPEIKDCLEEAGFRSVHFWLREMP 363 (382)
Q Consensus 338 ysl~EI~d~LeeAGF~~V~v~~r~~~ 363 (382)
++..++.++|+++||+.+++....++
T Consensus 182 ~~~~~l~~~l~~~G~~i~~~~~~~~~ 207 (224)
T TIGR01983 182 IKPSELTSWLESAGLRVKDVKGLVYN 207 (224)
T ss_pred CCHHHHHHHHHHcCCeeeeeeeEEee
Confidence 78899999999999999987644333
No 48
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.37 E-value=7.7e-12 Score=126.60 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=91.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.+++.++++++..+|+|||+|+.||+.|+++.... +..+..++.++.+|+....
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~~~-------------- 294 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALSGV-------------- 294 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccccC--------------
Confidence 4699999999999999999999889999999999999999875321 1112247889998874322
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
...+||+|+|- +....++ +.....+.|+.++++|+ |||.
T Consensus 295 -------------------------------------~~~~fDlIlsNPPfh~~~~~-~~~ia~~l~~~a~~~Lk-pGG~ 335 (378)
T PRK15001 295 -------------------------------------EPFRFNAVLCNPPFHQQHAL-TDNVAWEMFHHARRCLK-INGE 335 (378)
T ss_pred -------------------------------------CCCCEEEEEECcCcccCccC-CHHHHHHHHHHHHHhcc-cCCE
Confidence 13469999992 1222222 33456789999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEE
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYV 299 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyv 299 (382)
|+|-.+-...+..++ .+.|.+.+.+
T Consensus 336 L~iV~nr~l~y~~~L--~~~fg~~~~v 360 (378)
T PRK15001 336 LYIVANRHLDYFHKL--KKIFGNCTTI 360 (378)
T ss_pred EEEEEecCcCHHHHH--HHHcCCceEE
Confidence 999865433344333 4445555443
No 49
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.37 E-value=5.3e-12 Score=122.39 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=100.1
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||-|.++..+|++ | .+|+||.||++.+++|+++... .+ -..+|.+..+|.++++
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~-~g--l~~~v~v~~~D~~~~~------------- 125 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIRE-AG--LEDRVEVRLQDYRDLP------------- 125 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHC-ST--SSSTEEEEES-GGG---------------
T ss_pred CEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHh-cC--CCCceEEEEeeccccC-------------
Confidence 57999999999999999999 6 5899999999999999998643 11 1247899999987655
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
++||.|++.- ++.++. ++.+..+|+.+.+.|+ |||+|
T Consensus 126 ----------------------------------------~~fD~IvSi~-~~Ehvg-~~~~~~~f~~~~~~Lk-pgG~~ 162 (273)
T PF02353_consen 126 ----------------------------------------GKFDRIVSIE-MFEHVG-RKNYPAFFRKISRLLK-PGGRL 162 (273)
T ss_dssp -----------------------------------------S-SEEEEES-EGGGTC-GGGHHHHHHHHHHHSE-TTEEE
T ss_pred ----------------------------------------CCCCEEEEEe-chhhcC-hhHHHHHHHHHHHhcC-CCcEE
Confidence 4799999995 777764 4788999999999999 99999
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
++.......... ...+.... -|-+ .. +++.+ .+.++.+|..+++++||+
T Consensus 163 ~lq~i~~~~~~~--~~~~~~~~---~~i~-------ky-------iFPgg------------~lps~~~~~~~~~~~~l~ 211 (273)
T PF02353_consen 163 VLQTITHRDPPY--HAERRSSS---DFIR-------KY-------IFPGG------------YLPSLSEILRAAEDAGLE 211 (273)
T ss_dssp EEEEEEE--HHH--HHCTTCCC---HHHH-------HH-------TSTTS---------------BHHHHHHHHHHTT-E
T ss_pred EEEecccccccc--hhhcCCCc---eEEE-------Ee-------eCCCC------------CCCCHHHHHHHHhcCCEE
Confidence 997653211110 00000000 0100 00 01222 477899999999999999
Q ss_pred EEEEE
Q 045407 354 SVHFW 358 (382)
Q Consensus 354 ~V~v~ 358 (382)
+++++
T Consensus 212 v~~~~ 216 (273)
T PF02353_consen 212 VEDVE 216 (273)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88775
No 50
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.37 E-value=3.4e-12 Score=119.39 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=82.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
-.+++|+|||.|.|+..||.+.- +++++|+|+.+|+.|+++.. +..+|.+.++|+.++.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~------~~~~V~~~~~dvp~~~------------- 102 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLA------GLPHVEWIQADVPEFW------------- 102 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTT------T-SSEEEEES-TTT---------------
T ss_pred cceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcC------CCCCeEEEECcCCCCC-------------
Confidence 46799999999999999999985 69999999999999999962 2358999999996653
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+.++||+|+..- .+-||.+.++|..+.+.+..+|+ |||.+
T Consensus 103 --------------------------------------P~~~FDLIV~SE-VlYYL~~~~~L~~~l~~l~~~L~-pgG~L 142 (201)
T PF05401_consen 103 --------------------------------------PEGRFDLIVLSE-VLYYLDDAEDLRAALDRLVAALA-PGGHL 142 (201)
T ss_dssp ---------------------------------------SS-EEEEEEES--GGGSSSHHHHHHHHHHHHHTEE-EEEEE
T ss_pred --------------------------------------CCCCeeEEEEeh-HhHcCCCHHHHHHHHHHHHHHhC-CCCEE
Confidence 257899999985 66777778899999999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+-..
T Consensus 143 V~g~~ 147 (201)
T PF05401_consen 143 VFGHA 147 (201)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99443
No 51
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.37 E-value=1.9e-11 Score=111.68 Aligned_cols=150 Identities=18% Similarity=0.180 Sum_probs=98.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..|++.+. .|+|+|+|+.||+.|+++... .+ ...+|.+.++|+. ..
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~-~~--~~~~i~~~~~d~~-~~------------- 124 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPE-AG--LAGNITFEVGDLE-SL------------- 124 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHh-cC--CccCcEEEEcCch-hc-------------
Confidence 46799999999999999999985 599999999999999987532 11 1147899998831 11
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.+.||+|++++ ++.++ ..+++...++.+.+.++ ||++
T Consensus 125 ---------------------------------------~~~fD~v~~~~-~l~~~-~~~~~~~~l~~l~~~~~--~~~~ 161 (230)
T PRK07580 125 ---------------------------------------LGRFDTVVCLD-VLIHY-PQEDAARMLAHLASLTR--GSLI 161 (230)
T ss_pred ---------------------------------------cCCcCEEEEcc-hhhcC-CHHHHHHHHHHHHhhcC--CeEE
Confidence 35699999875 44443 34678899999888765 4444
Q ss_pred EEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCc
Q 045407 274 VMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFR 353 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~ 353 (382)
|. +.+.++... .... +.-.|.. .. .......++..++..+|+++||+
T Consensus 162 i~-~~~~~~~~~---~~~~---l~~~~~~--------------------~~------~~~~~~~~~~~~~~~~l~~~Gf~ 208 (230)
T PRK07580 162 FT-FAPYTPLLA---LLHW---IGGLFPG--------------------PS------RTTRIYPHREKGIRRALAAAGFK 208 (230)
T ss_pred EE-ECCccHHHH---HHHH---hccccCC--------------------cc------CCCCccccCHHHHHHHHHHCCCc
Confidence 43 222111110 0000 0011110 00 01123568999999999999999
Q ss_pred EEEEE
Q 045407 354 SVHFW 358 (382)
Q Consensus 354 ~V~v~ 358 (382)
.+++.
T Consensus 209 ~~~~~ 213 (230)
T PRK07580 209 VVRTE 213 (230)
T ss_pred eEeee
Confidence 98875
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.36 E-value=7.1e-12 Score=112.08 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
|..+|..++.. . .+.+|||+|||||.++..+++.+. +|+|+|+|++|+++|+++... ...++.++++|+
T Consensus 7 d~~~l~~~l~~-~---~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~~d~ 75 (179)
T TIGR00537 7 DSLLLEANLRE-L---KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKL-----NNVGLDVVMTDL 75 (179)
T ss_pred cHHHHHHHHHh-c---CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHH-----cCCceEEEEccc
Confidence 34555555443 2 234699999999999999999986 799999999999999998532 123578888887
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC------
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH------ 250 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~------ 250 (382)
.+.. .++||+|++-. .+....
T Consensus 76 ~~~~----------------------------------------------------~~~fD~Vi~n~-p~~~~~~~~~~~ 102 (179)
T TIGR00537 76 FKGV----------------------------------------------------RGKFDVILFNP-PYLPLEDDLRRG 102 (179)
T ss_pred cccc----------------------------------------------------CCcccEEEECC-CCCCCcchhccc
Confidence 5433 34689988653 222111
Q ss_pred ------------ChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 251 ------------KRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 251 ------------~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
...-+..+++.+.++|+ |||.|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~ 138 (179)
T TIGR00537 103 DWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQL 138 (179)
T ss_pred chhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEE
Confidence 12236778999999999 9999988
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.36 E-value=8.4e-12 Score=112.33 Aligned_cols=101 Identities=23% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..++++++..+|+|+|+|+.|++.|+++... . +..++.++++|+..+.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-~---~~~~i~~~~~d~~~~~------------- 94 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-F---GCGNIDIIPGEAPIEL------------- 94 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-h---CCCCeEEEecCchhhc-------------
Confidence 4579999999999999999998878999999999999999987422 1 1236888888863211
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...||+|++-. +. ..+...++.+++.|+ |||+|
T Consensus 95 ---------------------------------------~~~~D~v~~~~-~~------~~~~~~l~~~~~~Lk-~gG~l 127 (187)
T PRK08287 95 ---------------------------------------PGKADAIFIGG-SG------GNLTAIIDWSLAHLH-PGGRL 127 (187)
T ss_pred ---------------------------------------CcCCCEEEECC-Cc------cCHHHHHHHHHHhcC-CCeEE
Confidence 24689998753 22 234567889999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++...
T Consensus 128 v~~~~ 132 (187)
T PRK08287 128 VLTFI 132 (187)
T ss_pred EEEEe
Confidence 99653
No 54
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.34 E-value=3e-11 Score=111.55 Aligned_cols=62 Identities=16% Similarity=0.313 Sum_probs=51.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
+.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|+++... .+..++.++++|+.++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~----~~~~~~~~~~~d~~~~ 149 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR----LGLDNVTFLQSDWFEP 149 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----cCCCeEEEEECchhcc
Confidence 4579999999999999999987777999999999999999987532 1223699999998653
No 55
>PRK05785 hypothetical protein; Provisional
Probab=99.34 E-value=8.9e-12 Score=116.89 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=76.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..|++.. ..+|+|||+|++||+.|+++. .++++|+.+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~lp------------- 105 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEALP------------- 105 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhhCC-------------
Confidence 5679999999999999999984 258999999999999998752 24688887666
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
|....||+|++.+ ++.++. ++.+.+++++++|+ | ++.
T Consensus 106 -------------------------------------~~d~sfD~v~~~~-~l~~~~---d~~~~l~e~~RvLk-p-~~~ 142 (226)
T PRK05785 106 -------------------------------------FRDKSFDVVMSSF-ALHASD---NIEKVIAEFTRVSR-K-QVG 142 (226)
T ss_pred -------------------------------------CCCCCEEEEEecC-hhhccC---CHHHHHHHHHHHhc-C-ceE
Confidence 2357799999976 666554 56789999999999 6 444
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+++.
T Consensus 143 ile~~ 147 (226)
T PRK05785 143 FIAMG 147 (226)
T ss_pred EEEeC
Confidence 56664
No 56
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.34 E-value=7.5e-12 Score=121.30 Aligned_cols=164 Identities=17% Similarity=0.207 Sum_probs=112.8
Q ss_pred CcccccCCCccHhHHHHHHhCCC------CeEEEEeCCHHHHHHHHHhccc-cccCCCCcceEEEeccCCCchhhhhccc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR------RTAVGLDLDLEALEWCMENNLN-KVGADGYSRISLFHGNVLQPLEAKLVRY 187 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~------~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~RI~l~~gDV~~~~~~~~~~~ 187 (382)
..+||+|||||-++..+++.-.. .+|+++|++++||+.|.++... .+. ...++.++++|..+++
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~--~~~~~~w~~~dAE~Lp------- 172 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK--ASSRVEWVEGDAEDLP------- 172 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC--cCCceEEEeCCcccCC-------
Confidence 46899999999999999998776 6899999999999999999744 222 2347999999998887
Q ss_pred chhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 188 EPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
|....||+.+..+ ++-+.+ +..+.++.+|++|+
T Consensus 173 -------------------------------------------Fdd~s~D~yTiaf-GIRN~t---h~~k~l~EAYRVLK 205 (296)
T KOG1540|consen 173 -------------------------------------------FDDDSFDAYTIAF-GIRNVT---HIQKALREAYRVLK 205 (296)
T ss_pred -------------------------------------------CCCCcceeEEEec-ceecCC---CHHHHHHHHHHhcC
Confidence 3456799999886 444444 56789999999999
Q ss_pred CCCcEEEE-eccCCC-chhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeee---eeE-EecCHH
Q 045407 268 KKGGIFVM-DLYGGT-SSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFS---YNW-RLWSLP 341 (382)
Q Consensus 268 ~pGGiFVf-Dl~gg~-s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fs---y~~-Rlysl~ 341 (382)
|||.|.. ++.--+ +....+ ..+..||.+...-.+ + .+. ++..+ ++. |.-+-+
T Consensus 206 -pGGrf~cLeFskv~~~~l~~f------------y~~ysf~VlpvlG~~-----i-agd---~~sYqYLveSI~rfp~qe 263 (296)
T KOG1540|consen 206 -PGGRFSCLEFSKVENEPLKWF------------YDQYSFDVLPVLGEI-----I-AGD---RKSYQYLVESIRRFPPQE 263 (296)
T ss_pred -CCcEEEEEEccccccHHHHHH------------HHhhhhhhhchhhHh-----h-hhh---HhhhhhHHhhhhcCCCHH
Confidence 9999985 443211 121111 122223332221100 0 111 22222 233 566778
Q ss_pred HHHHHHHHcCCcEEE
Q 045407 342 EIKDCLEEAGFRSVH 356 (382)
Q Consensus 342 EI~d~LeeAGF~~V~ 356 (382)
|++.+.++|||.++.
T Consensus 264 ~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 264 EFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHHcCCcccc
Confidence 999999999999987
No 57
>PRK06922 hypothetical protein; Provisional
Probab=99.32 E-value=8.8e-12 Score=133.42 Aligned_cols=110 Identities=10% Similarity=0.105 Sum_probs=85.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||+|||||.++..+++..+..+|+|+|+|+.||+.|+++... .+.++.++++|+.+++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-----~g~~ie~I~gDa~dLp~------------ 481 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-----EGRSWNVIKGDAINLSS------------ 481 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-----cCCCeEEEEcchHhCcc------------
Confidence 4579999999999999999988888999999999999999987421 22478899999876541
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchh---cccC------ChhHHHHHHHHHHh
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSC---CCLH------KRADLVLYFKHVLH 264 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~---~yL~------~r~dL~~yFr~V~~ 264 (382)
.|....||+|++..... .|+. +.+++...|+.+++
T Consensus 482 ------------------------------------~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~R 525 (677)
T PRK06922 482 ------------------------------------SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYE 525 (677)
T ss_pred ------------------------------------ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHH
Confidence 02246799998643222 2332 35789999999999
Q ss_pred hccCCCcEEEE-ec
Q 045407 265 ALSKKGGIFVM-DL 277 (382)
Q Consensus 265 ~L~~pGGiFVf-Dl 277 (382)
+|+ |||.||+ |.
T Consensus 526 VLK-PGGrLII~D~ 538 (677)
T PRK06922 526 VLK-PGGRIIIRDG 538 (677)
T ss_pred HcC-CCcEEEEEeC
Confidence 999 9999999 64
No 58
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.32 E-value=5.3e-12 Score=103.72 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=80.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||+|.++...++.+ ..+++|+|+|+.++++|+.+... .+ ...++.++++|.++...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~-~~--~~~~~~~~~~D~~~~~~------------- 64 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPR-NG--LDDRVEVIVGDARDLPE------------- 64 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHH-CT--TTTTEEEEESHHHHHHH-------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHH-cc--CCceEEEEECchhhchh-------------
Confidence 368999999999999999999 57899999999999999998643 11 12479999999865541
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC----hhHHHHHHHHHHhhccCCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK----RADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~----r~dL~~yFr~V~~~L~~pG 270 (382)
.+..++||+|++----...... .......++++.+.|+ ||
T Consensus 65 -----------------------------------~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~-~g 108 (117)
T PF13659_consen 65 -----------------------------------PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLK-PG 108 (117)
T ss_dssp -----------------------------------TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEE-EE
T ss_pred -----------------------------------hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcC-CC
Confidence 0225779999885544333222 2245788999999999 99
Q ss_pred cEEEE
Q 045407 271 GIFVM 275 (382)
Q Consensus 271 GiFVf 275 (382)
|+|++
T Consensus 109 G~~~~ 113 (117)
T PF13659_consen 109 GVLVF 113 (117)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99987
No 59
>PRK04266 fibrillarin; Provisional
Probab=99.32 E-value=4.5e-11 Score=112.96 Aligned_cols=104 Identities=8% Similarity=0.033 Sum_probs=77.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+++.....+|+|+|+|++||+.++++... ..+|.++.+|+.+|...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~------------ 135 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERY------------ 135 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchh------------
Confidence 479999999999999999985445899999999999988876422 13688999998765300
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
. ++ ...||+|++- +..+......++++++.|+ |||.|+
T Consensus 136 ---~-------------------------------~l-~~~~D~i~~d------~~~p~~~~~~L~~~~r~LK-pGG~lv 173 (226)
T PRK04266 136 ---A-------------------------------HV-VEKVDVIYQD------VAQPNQAEIAIDNAEFFLK-DGGYLL 173 (226)
T ss_pred ---h-------------------------------hc-cccCCEEEEC------CCChhHHHHHHHHHHHhcC-CCcEEE
Confidence 0 01 2459999853 2233344567899999999 999999
Q ss_pred Eecc
Q 045407 275 MDLY 278 (382)
Q Consensus 275 fDl~ 278 (382)
+-++
T Consensus 174 I~v~ 177 (226)
T PRK04266 174 LAIK 177 (226)
T ss_pred EEEe
Confidence 8654
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.31 E-value=6.8e-12 Score=115.39 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=82.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC-CCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV-LQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV-~~~~~~~~~~~~~~~~ 192 (382)
...|||+|||||.++..+++..+..+|+|||+|++|++.|+++... .+..++.++++|+ ..++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~----~~~~~v~~~~~d~~~~l~~----------- 105 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE----EGLTNLRLLCGDAVEVLLD----------- 105 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH----cCCCCEEEEecCHHHHHHH-----------
Confidence 4579999999999999999987767899999999999999987532 1224799999998 43320
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh-----hHHHHHHHHHHhhcc
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR-----ADLVLYFKHVLHALS 267 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r-----~dL~~yFr~V~~~L~ 267 (382)
. +....||+|++.+ +.-|.... .....+++.++++|+
T Consensus 106 -----~--------------------------------~~~~~~D~V~~~~-~~p~~~~~~~~~~~~~~~~l~~i~~~Lk 147 (202)
T PRK00121 106 -----M--------------------------------FPDGSLDRIYLNF-PDPWPKKRHHKRRLVQPEFLALYARKLK 147 (202)
T ss_pred -----H--------------------------------cCccccceEEEEC-CCCCCCccccccccCCHHHHHHHHHHcC
Confidence 0 1235699998753 32222211 124678999999999
Q ss_pred CCCcEEEEeccC
Q 045407 268 KKGGIFVMDLYG 279 (382)
Q Consensus 268 ~pGGiFVfDl~g 279 (382)
|||+|++-...
T Consensus 148 -pgG~l~i~~~~ 158 (202)
T PRK00121 148 -PGGEIHFATDW 158 (202)
T ss_pred -CCCEEEEEcCC
Confidence 99999996543
No 61
>PLN03075 nicotianamine synthase; Provisional
Probab=99.31 E-value=4.5e-11 Score=117.72 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=100.8
Q ss_pred CCCCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHH--HhCCCCeEEEEeCCHHHHHHHHH
Q 045407 78 TDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWL--RSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 78 ~~~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~ela--r~g~~~tVvGVDLS~emL~~A~e 155 (382)
..-| |+.-|.++ .+-+...+..+..+ .|.+|+|+|||.|-++..++ +..++.+++|+|+|++|+++|++
T Consensus 97 ~~Fp-y~~nY~~L---~~lE~~~L~~~~~~-----~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~ 167 (296)
T PLN03075 97 NLFP-YYNNYLKL---SKLEFDLLSQHVNG-----VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARR 167 (296)
T ss_pred hcCC-chHHHHHH---HHHHHHHHHHhhcC-----CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 4456 77888888 45555555444332 47789999999775544433 45677789999999999999999
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
....+ .+-..+|.|.++|+.+... .+..
T Consensus 168 ~~~~~--~gL~~rV~F~~~Da~~~~~--------------------------------------------------~l~~ 195 (296)
T PLN03075 168 LVSSD--PDLSKRMFFHTADVMDVTE--------------------------------------------------SLKE 195 (296)
T ss_pred Hhhhc--cCccCCcEEEECchhhccc--------------------------------------------------ccCC
Confidence 86321 1123579999999876530 1467
Q ss_pred ccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 236 RDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 236 fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
||+|+++ ++-|+.. ++-..+|++++++|+ |||+|++-..
T Consensus 196 FDlVF~~--ALi~~dk-~~k~~vL~~l~~~Lk-PGG~Lvlr~~ 234 (296)
T PLN03075 196 YDVVFLA--ALVGMDK-EEKVKVIEHLGKHMA-PGALLMLRSA 234 (296)
T ss_pred cCEEEEe--ccccccc-ccHHHHHHHHHHhcC-CCcEEEEecc
Confidence 9999999 6666543 566899999999999 9999999874
No 62
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=99.29 E-value=7.5e-10 Score=110.02 Aligned_cols=230 Identities=17% Similarity=0.144 Sum_probs=143.9
Q ss_pred CCCCCCchHH-------HHHHhhcCChhh-----HHHHHHHHHHhhCCC-CCCcccccCCCccHhHHHHHH----hCCCC
Q 045407 76 PSTDMPSKFL-------LYQQSVQSPKGD-----ISYLQKFFLIYVGGR-QPLHLQEDFCGTALLSTEWLR----SDSRR 138 (382)
Q Consensus 76 ~~~~~p~~~~-------LYd~~vq~p~~D-----i~yl~~~f~~y~ggr-~p~~LLEl~CGTG~LS~elar----~g~~~ 138 (382)
..+.+|+|+. ||++.++.|+|= ++-|++....-+..- ....|+|+|||.|+-+..|++ .+...
T Consensus 26 ~~k~lp~k~~YD~~Gs~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~ 105 (319)
T TIGR03439 26 QPRTLPTLLLYDDEGLKLFEEITYSPEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSV 105 (319)
T ss_pred CCCCCChHhhhcchHHHHHHHHHcCCccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCc
Confidence 4467888874 589999998774 344444433222111 123689999999998665554 33335
Q ss_pred eEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhcccc
Q 045407 139 TAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNF 218 (382)
Q Consensus 139 tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (382)
+-++||+|.++|+.+.++.... .-....|.-++||..++.. . +. .+
T Consensus 106 ~Y~plDIS~~~L~~a~~~L~~~--~~p~l~v~~l~gdy~~~l~--~-------------l~----------------~~- 151 (319)
T TIGR03439 106 DYYALDVSRSELQRTLAELPLG--NFSHVRCAGLLGTYDDGLA--W-------------LK----------------RP- 151 (319)
T ss_pred eEEEEECCHHHHHHHHHhhhhc--cCCCeEEEEEEecHHHHHh--h-------------cc----------------cc-
Confidence 7899999999999999886410 1122345558998766531 0 10 00
Q ss_pred ccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHh-hccCCCcEEEE--eccCCC-------------c
Q 045407 219 TASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLH-ALSKKGGIFVM--DLYGGT-------------S 282 (382)
Q Consensus 219 ~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~-~L~~pGGiFVf--Dl~gg~-------------s 282 (382)
.....+.+|+.+-.|++-|.. ++....++.+++ +|+ |||.||+ |+.-.. +
T Consensus 152 ------------~~~~~~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~-~~d~lLiG~D~~k~~~~l~~AY~d~~gvT 217 (319)
T TIGR03439 152 ------------ENRSRPTTILWLGSSIGNFSR-PEAAAFLAGFLATALS-PSDSFLIGLDGCKDPDKVLRAYNDPGGVT 217 (319)
T ss_pred ------------cccCCccEEEEeCccccCCCH-HHHHHHHHHHHHhhCC-CCCEEEEecCCCCCHHHHHHHhcCCcchh
Confidence 002346899999999998654 677999999999 999 8999999 764211 1
Q ss_pred h--hh-hhHh-hhcc-------CCeEEEEeecccccccceEEEEEEE-----------EeecccceeeeeeeeeEEecCH
Q 045407 283 S--EQ-KLRL-QRRF-------ANFTYVWEQAEFDIIERKTRISLHF-----------HLQKEQKKLRHAFSYNWRLWSL 340 (382)
Q Consensus 283 ~--e~-kl~~-~R~~-------~~~tyvWeq~~fD~~~~~~ri~L~F-----------~~~~~~~~lr~~fsy~~Rlysl 340 (382)
. .. -|.. .|.. ++|.++ +.||+..+++++.|.. .+.+|. .+.- ..-+=|++
T Consensus 218 a~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~---a~~n~~~~rie~~l~s~~~~~v~~~~~~f~~GE-~I~t---e~S~Kyt~ 290 (319)
T TIGR03439 218 RRFVLNGLVHANEILGSEAFREEDWEFL---GEWDEELGRHEAFYIPKKDVSIGLEGVVIRKGE-KIRF---ECSGKYDK 290 (319)
T ss_pred HHHHHHHHHHHHHHhCccccCHHHcEEE---EEEcCCCCeEEEEEEeCCcEEEcCceEEEcCCC-EEEE---EeeeCCCH
Confidence 1 00 1100 1221 233333 2456766666665543 233333 2221 22266899
Q ss_pred HHHHHHHHHcCCcEEEEEec
Q 045407 341 PEIKDCLEEAGFRSVHFWLR 360 (382)
Q Consensus 341 ~EI~d~LeeAGF~~V~v~~r 360 (382)
++++.+++.|||+.+++|..
T Consensus 291 ~~~~~l~~~aG~~~~~~W~d 310 (319)
T TIGR03439 291 DEREKLCQSAGLKVVDVWTN 310 (319)
T ss_pred HHHHHHHHHCCCeeeEEEEC
Confidence 99999999999999999963
No 63
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.29 E-value=3.7e-11 Score=116.50 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=52.5
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
+.+|||+|||||.++..+++..+..+|+|+|+|+.||+.|++|... .+- ..+|.++++|+.++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~-~~~--~~~i~~~~~D~~~~ 184 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER-HGL--EDRVTLIQSDLFAA 184 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEECchhhc
Confidence 5679999999999999999998778999999999999999998532 111 14799999998543
No 64
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.28 E-value=2e-11 Score=116.57 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=74.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCC---CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSR---RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~---~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
+.+|||+|||||.++..+++..+. .+|+|+|+|+.||+.|+++. .++.++++|+.+++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~lp---------- 146 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRLP---------- 146 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccCC----------
Confidence 457999999999999999887542 26999999999999998763 25789999987766
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
|....||+|++... + ..++.++++|+ ||
T Consensus 147 ----------------------------------------~~~~sfD~I~~~~~-------~----~~~~e~~rvLk-pg 174 (272)
T PRK11088 147 ----------------------------------------FADQSLDAIIRIYA-------P----CKAEELARVVK-PG 174 (272)
T ss_pred ----------------------------------------CcCCceeEEEEecC-------C----CCHHHHHhhcc-CC
Confidence 22467999998642 1 13567889999 99
Q ss_pred cEEEEeccC
Q 045407 271 GIFVMDLYG 279 (382)
Q Consensus 271 GiFVfDl~g 279 (382)
|+||+-..+
T Consensus 175 G~li~~~p~ 183 (272)
T PRK11088 175 GIVITVTPG 183 (272)
T ss_pred CEEEEEeCC
Confidence 999985544
No 65
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.28 E-value=7.2e-11 Score=117.81 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=89.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||+|.++..++++.+..+|+|+|+|+.||+.|+++... ......++.+|+....
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~-----n~l~~~~~~~D~~~~~-------------- 258 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA-----NGLEGEVFASNVFSDI-------------- 258 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCCEEEEccccccc--------------
Confidence 469999999999999999998877899999999999999987532 1123566777764321
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc--CChhHHHHHHHHHHhhccCCCcE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL--HKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL--~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+.||+|+|- -.|.+. .+.......++.+.++|+ |||.
T Consensus 259 --------------------------------------~~~fDlIvsN-PPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~ 298 (342)
T PRK09489 259 --------------------------------------KGRFDMIISN-PPFHDGIQTSLDAAQTLIRGAVRHLN-SGGE 298 (342)
T ss_pred --------------------------------------CCCccEEEEC-CCccCCccccHHHHHHHHHHHHHhcC-cCCE
Confidence 3579999993 343321 234677899999999999 9999
Q ss_pred EEEeccCCCchhhhhHhhhccCCeEEE
Q 045407 273 FVMDLYGGTSSEQKLRLQRRFANFTYV 299 (382)
Q Consensus 273 FVfDl~gg~s~e~kl~~~R~~~~~tyv 299 (382)
|++-.+.--+++.. +.+.|..+..+
T Consensus 299 L~iVan~~l~y~~~--l~~~Fg~~~~l 323 (342)
T PRK09489 299 LRIVANAFLPYPDL--LDETFGSHEVL 323 (342)
T ss_pred EEEEEeCCCChHHH--HHHHcCCeEEE
Confidence 99866543344432 23445555444
No 66
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.27 E-value=5e-11 Score=111.91 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc--c---c---CCCCcceE
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK--V---G---ADGYSRIS 170 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k--l---~---~d~~~RI~ 170 (382)
.+|.+++... ......+||++|||+|+.+..||++|. +|+|||+|+.+|++|..++.-. . + .....+|.
T Consensus 24 ~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 24 PLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred HHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 4566655431 111124699999999999999999996 6999999999999986543210 0 0 01135799
Q ss_pred EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC
Q 045407 171 LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH 250 (382)
Q Consensus 171 l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~ 250 (382)
++++|+.++.. ...+.||+|.... ++++|
T Consensus 101 ~~~~D~~~l~~-------------------------------------------------~~~~~fd~v~D~~-~~~~l- 129 (218)
T PRK13255 101 IYCGDFFALTA-------------------------------------------------ADLADVDAVYDRA-ALIAL- 129 (218)
T ss_pred EEECcccCCCc-------------------------------------------------ccCCCeeEEEehH-hHhhC-
Confidence 99999987651 0135789998765 55555
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
.++.-..|++.+.+.|+ |||++++
T Consensus 130 ~~~~R~~~~~~l~~lL~-pgG~~~l 153 (218)
T PRK13255 130 PEEMRERYVQQLAALLP-AGCRGLL 153 (218)
T ss_pred CHHHHHHHHHHHHHHcC-CCCeEEE
Confidence 46777999999999999 9996444
No 67
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.27 E-value=9.6e-12 Score=119.24 Aligned_cols=102 Identities=16% Similarity=0.235 Sum_probs=80.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
+.|||.|||.|.||..+||.| +.|+|+|+|+.+|+.|+.++.+ .+..|.+.+..+.++.
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e-----~gv~i~y~~~~~edl~-------------- 119 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALE-----SGVNIDYRQATVEDLA-------------- 119 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhh-----ccccccchhhhHHHHH--------------
Confidence 469999999999999999999 4799999999999999998643 2234556666654444
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
. .-++||+|+|+- .+=|+.+++. .++++.+.|| |||+.+
T Consensus 120 ---~---------------------------------~~~~FDvV~cmE-VlEHv~dp~~---~~~~c~~lvk-P~G~lf 158 (243)
T COG2227 120 ---S---------------------------------AGGQFDVVTCME-VLEHVPDPES---FLRACAKLVK-PGGILF 158 (243)
T ss_pred ---h---------------------------------cCCCccEEEEhh-HHHccCCHHH---HHHHHHHHcC-CCcEEE
Confidence 1 026899999996 7777776654 7788899998 999999
Q ss_pred E-ecc
Q 045407 275 M-DLY 278 (382)
Q Consensus 275 f-Dl~ 278 (382)
+ .++
T Consensus 159 ~STin 163 (243)
T COG2227 159 LSTIN 163 (243)
T ss_pred Eeccc
Confidence 8 444
No 68
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.26 E-value=5.3e-11 Score=120.21 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=79.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||+|.++..+++.. ..+|+|+|+|++|+++|+++.. ...+.+..+|++++
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l-------------- 225 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL-------------- 225 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc--------------
Confidence 3579999999999999999863 2589999999999999999851 12477777776432
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.++||+|++.. .+.++. ...+..+|+.+++.|+ |||+|
T Consensus 226 ---------------------------------------~~~fD~Ivs~~-~~ehvg-~~~~~~~l~~i~r~Lk-pGG~l 263 (383)
T PRK11705 226 ---------------------------------------NGQFDRIVSVG-MFEHVG-PKNYRTYFEVVRRCLK-PDGLF 263 (383)
T ss_pred ---------------------------------------CCCCCEEEEeC-chhhCC-hHHHHHHHHHHHHHcC-CCcEE
Confidence 25699999865 455543 3567899999999999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
++-..
T Consensus 264 vl~~i 268 (383)
T PRK11705 264 LLHTI 268 (383)
T ss_pred EEEEc
Confidence 99544
No 69
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.26 E-value=6.3e-11 Score=114.27 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=51.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+|||+|||||.++..+++..+...|+|+|+|++||++|+++... .+- ..++.++++|+.++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~-~~~--~~~v~~~~~d~~~~ 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK-NQL--EHRVEFIQSNLFEP 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEECchhcc
Confidence 579999999999999999998877999999999999999998532 111 13699999998654
No 70
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.26 E-value=5.8e-11 Score=106.22 Aligned_cols=139 Identities=15% Similarity=0.175 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..|.+.+... ...+|||+|||||.++..++++++..+|+++|+|+.|++.|+++... . +-..+.++++|+.+
T Consensus 21 ~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~-n---~~~~v~~~~~d~~~ 92 (170)
T PF05175_consen 21 RLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER-N---GLENVEVVQSDLFE 92 (170)
T ss_dssp HHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH-T---TCTTEEEEESSTTT
T ss_pred HHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-c---Cccccccccccccc
Confidence 4566666553 23469999999999999999999987899999999999999987533 1 11128999999865
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc-ccCChhHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC-CLHKRADLVL 257 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~-yL~~r~dL~~ 257 (382)
.. ...+||+|++--=... .-....-+..
T Consensus 93 ~~---------------------------------------------------~~~~fD~Iv~NPP~~~~~~~~~~~~~~ 121 (170)
T PF05175_consen 93 AL---------------------------------------------------PDGKFDLIVSNPPFHAGGDDGLDLLRD 121 (170)
T ss_dssp TC---------------------------------------------------CTTCEEEEEE---SBTTSHCHHHHHHH
T ss_pred cc---------------------------------------------------cccceeEEEEccchhcccccchhhHHH
Confidence 44 1467999998542111 0012234788
Q ss_pred HHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEE
Q 045407 258 YFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYV 299 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyv 299 (382)
.++.+.++|+ |||.|+|=+......... +.+.|.++..+
T Consensus 122 ~i~~a~~~Lk-~~G~l~lv~~~~~~~~~~--l~~~f~~~~~~ 160 (170)
T PF05175_consen 122 FIEQARRYLK-PGGRLFLVINSHLGYERL--LKELFGDVEVV 160 (170)
T ss_dssp HHHHHHHHEE-EEEEEEEEEETTSCHHHH--HHHHHS--EEE
T ss_pred HHHHHHHhcc-CCCEEEEEeecCCChHHH--HHHhcCCEEEE
Confidence 8999999999 999998844432223222 34445444433
No 71
>PRK14967 putative methyltransferase; Provisional
Probab=99.25 E-value=5.2e-11 Score=110.48 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=57.8
Q ss_pred CChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 93 SPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 93 ~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
.|..|...+...+... +-....+|||+|||||.++..+++.+. .+|+|+|+|+.|+++|+++... .+.++.++
T Consensus 17 ~p~~ds~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~-----~~~~~~~~ 89 (223)
T PRK14967 17 RPQEDTQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALL-----AGVDVDVR 89 (223)
T ss_pred CCCCcHHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHH-----hCCeeEEE
Confidence 3555666666666542 112224799999999999999999875 4899999999999999987532 12367888
Q ss_pred eccCCC
Q 045407 173 HGNVLQ 178 (382)
Q Consensus 173 ~gDV~~ 178 (382)
++|+.+
T Consensus 90 ~~d~~~ 95 (223)
T PRK14967 90 RGDWAR 95 (223)
T ss_pred ECchhh
Confidence 888754
No 72
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.25 E-value=2.6e-11 Score=123.69 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=82.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||+|.++..+++.+. +|+|||+|++||+.+++.+. ...++.++++|+....
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~-------------- 96 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESING------HYKNVKFMCADVTSPD-------------- 96 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccc--------------
Confidence 4799999999999999999874 79999999999998876431 1247899999986543
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
+ .+....||+|+|.. +++||.+ +++...++.+++.|+ |||+++
T Consensus 97 ---~-------------------------------~~~~~~fD~I~~~~-~l~~l~~-~~~~~~l~~~~r~Lk-~gG~l~ 139 (475)
T PLN02336 97 ---L-------------------------------NISDGSVDLIFSNW-LLMYLSD-KEVENLAERMVKWLK-VGGYIF 139 (475)
T ss_pred ---c-------------------------------CCCCCCEEEEehhh-hHHhCCH-HHHHHHHHHHHHhcC-CCeEEE
Confidence 1 02245799999864 7777765 578999999999999 999999
Q ss_pred E
Q 045407 275 M 275 (382)
Q Consensus 275 f 275 (382)
+
T Consensus 140 ~ 140 (475)
T PLN02336 140 F 140 (475)
T ss_pred E
Confidence 8
No 73
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.25 E-value=1.1e-10 Score=105.89 Aligned_cols=89 Identities=12% Similarity=0.170 Sum_probs=65.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||+|.++..+++.. ..+++|||+|++|++.|+++ ++.++++|+.+...
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-----------~~~~~~~d~~~~l~------------- 69 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-----------GVNVIQGDLDEGLE------------- 69 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-----------CCeEEEEEhhhccc-------------
Confidence 369999999999999988764 34789999999999998754 35678888754210
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
.+...+||+|++.. ++.|+.+. ...++.+++.++
T Consensus 70 -----------------------------------~~~~~sfD~Vi~~~-~l~~~~d~---~~~l~e~~r~~~ 103 (194)
T TIGR02081 70 -----------------------------------AFPDKSFDYVILSQ-TLQATRNP---EEILDEMLRVGR 103 (194)
T ss_pred -----------------------------------ccCCCCcCEEEEhh-HhHcCcCH---HHHHHHHHHhCC
Confidence 01245799999975 77787654 455677766665
No 74
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=9.7e-11 Score=110.22 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=60.7
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
|..+...+.+..........+.+|||+|||+|.++..+++..+..+|+|+|+|+.|+++|+++... ....++.+++
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~----~~~~~i~~~~ 164 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH----GLGARVEFLQ 164 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh----CCCCcEEEEE
Confidence 444444444444322233335689999999999999999998778999999999999999998531 1234799999
Q ss_pred ccCCCc
Q 045407 174 GNVLQP 179 (382)
Q Consensus 174 gDV~~~ 179 (382)
+|+.++
T Consensus 165 ~d~~~~ 170 (275)
T PRK09328 165 GDWFEP 170 (275)
T ss_pred ccccCc
Confidence 998554
No 75
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.24 E-value=7e-11 Score=107.27 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..+++..+...|+|||+|++|+++|+++... . +..++.++++|+.+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~-~---~~~~v~~~~~d~~~~~~------------ 104 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR-F---GVKNVEVIEGSAPECLA------------ 104 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-h---CCCCeEEEECchHHHHh------------
Confidence 3579999999999999999887767999999999999999987422 2 22368999999744210
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. + .+.+|.|+... ...+...++.+++.|+ |||.|
T Consensus 105 ----~--------------------------------~-~~~~d~v~~~~--------~~~~~~~l~~~~~~Lk-pgG~l 138 (196)
T PRK07402 105 ----Q--------------------------------L-APAPDRVCIEG--------GRPIKEILQAVWQYLK-PGGRL 138 (196)
T ss_pred ----h--------------------------------C-CCCCCEEEEEC--------CcCHHHHHHHHHHhcC-CCeEE
Confidence 0 0 12356654421 1356788999999999 99999
Q ss_pred EEeccC
Q 045407 274 VMDLYG 279 (382)
Q Consensus 274 VfDl~g 279 (382)
++....
T Consensus 139 i~~~~~ 144 (196)
T PRK07402 139 VATASS 144 (196)
T ss_pred EEEeec
Confidence 998753
No 76
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.24 E-value=1.4e-11 Score=109.51 Aligned_cols=141 Identities=16% Similarity=0.181 Sum_probs=87.4
Q ss_pred EEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhcccccc
Q 045407 141 VGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTA 220 (382)
Q Consensus 141 vGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (382)
+|||+|++||+.|+++...+ ......+|.++++|+.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~-~~~~~~~i~~~~~d~~~lp---------------------------------------- 39 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLK-ARSCYKCIEWIEGDAIDLP---------------------------------------- 39 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcc-cccCCCceEEEEechhhCC----------------------------------------
Confidence 59999999999998774321 1112247999999998776
Q ss_pred CCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCCeEEE
Q 045407 221 SSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFANFTYV 299 (382)
Q Consensus 221 ~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~~tyv 299 (382)
+....||+|++.+ ++.++ .+....|++++++|+ |||.|++ |+....+..... .. .+ .
T Consensus 40 ----------~~~~~fD~v~~~~-~l~~~---~d~~~~l~ei~rvLk-pGG~l~i~d~~~~~~~~~~~--~~---~~--~ 97 (160)
T PLN02232 40 ----------FDDCEFDAVTMGY-GLRNV---VDRLRAMKEMYRVLK-PGSRVSILDFNKSNQSVTTF--MQ---GW--M 97 (160)
T ss_pred ----------CCCCCeeEEEecc-hhhcC---CCHHHHHHHHHHHcC-cCeEEEEEECCCCChHHHHH--HH---HH--H
Confidence 2246799999864 44444 467899999999999 9999976 665332211100 00 00 0
Q ss_pred EeecccccccceEEEEEEEEeecccceeeeeeeee----EEecCHHHHHHHHHHcCCcEEEEE
Q 045407 300 WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYN----WRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 300 Weq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~----~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
+.. .-+.-..+ ... +++++|- ....+.+|+.++|++|||+.+..+
T Consensus 98 ~~~--~~~~~~~~-------~~~-----~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 98 IDN--VVVPVATV-------YDL-----AKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred ccc--hHhhhhHH-------hCC-----hHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 100 00000000 000 1122222 367799999999999999999765
No 77
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.24 E-value=8.3e-11 Score=107.29 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=80.1
Q ss_pred CCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..+++. ++..+|+|+|+|++|++.|+++... .+- ..++.++++|+.+... .
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~-~g~--~~~v~~~~~d~~~~l~--~-------- 107 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK-FGV--LNNIVLIKGEAPEILF--T-------- 107 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-hCC--CCCeEEEEechhhhHh--h--------
Confidence 357999999999999999875 5556899999999999999988532 220 2478899999865320 0
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
+ .+.||+|++... ..++..+++.+.+.|+ |||.
T Consensus 108 -----~----------------------------------~~~~D~V~~~~~-------~~~~~~~l~~~~~~Lk-pgG~ 140 (198)
T PRK00377 108 -----I----------------------------------NEKFDRIFIGGG-------SEKLKEIISASWEIIK-KGGR 140 (198)
T ss_pred -----c----------------------------------CCCCCEEEECCC-------cccHHHHHHHHHHHcC-CCcE
Confidence 0 256999988431 2456788999999999 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
+|++..
T Consensus 141 lv~~~~ 146 (198)
T PRK00377 141 IVIDAI 146 (198)
T ss_pred EEEEee
Confidence 999764
No 78
>PRK04457 spermidine synthase; Provisional
Probab=99.23 E-value=1.7e-10 Score=110.80 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=86.8
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.|.+|||+|||+|.++..|++..+..+|++||+|+++++.|+++... .. ...|+.++++|.++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--~~-~~~rv~v~~~Da~~~l~----------- 131 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL--PE-NGERFEVIEADGAEYIA----------- 131 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC--CC-CCCceEEEECCHHHHHH-----------
Confidence 47789999999999999999998888999999999999999998522 11 12589999999765530
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
. ...+||+|++=.+.-......-....+|+.++++|+ |||+
T Consensus 132 -----~---------------------------------~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~-pgGv 172 (262)
T PRK04457 132 -----V---------------------------------HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALS-SDGI 172 (262)
T ss_pred -----h---------------------------------CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcC-CCcE
Confidence 0 034699998643221111111113689999999999 9999
Q ss_pred EEEeccCCCc
Q 045407 273 FVMDLYGGTS 282 (382)
Q Consensus 273 FVfDl~gg~s 282 (382)
|++.+++..+
T Consensus 173 lvin~~~~~~ 182 (262)
T PRK04457 173 FVVNLWSRDK 182 (262)
T ss_pred EEEEcCCCch
Confidence 9999876543
No 79
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=9e-11 Score=115.30 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=51.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.+|||+|||||.++..+++..+..+|+|+|+|+.||+.|+++... .+ -..+|.++++|+.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~-~~--l~~~i~~~~~D~~~ 195 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER-HG--LEDRVTLIESDLFA 195 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hC--CCCcEEEEECchhh
Confidence 679999999999999999998778999999999999999998532 11 12479999999855
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.21 E-value=6.5e-11 Score=107.98 Aligned_cols=110 Identities=14% Similarity=0.161 Sum_probs=81.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..+||+|||+|.++..+|++.+.+.|+|||+|++||+.|+++... .+..+|.++++|+.++.. .
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~----~~l~ni~~i~~d~~~~~~-~----------- 81 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK----LGLKNLHVLCGDANELLD-K----------- 81 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH----hCCCCEEEEccCHHHHHH-h-----------
Confidence 468999999999999999999888999999999999999987532 123479999999976541 0
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh-----hHHHHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR-----ADLVLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r-----~dL~~yFr~V~~~L~~p 269 (382)
+ +....+|+|++.+ +.-|...+ -.....++.++++|+ |
T Consensus 82 ---~--------------------------------~~~~~~d~v~~~~-pdpw~k~~h~~~r~~~~~~l~~~~r~Lk-p 124 (194)
T TIGR00091 82 ---F--------------------------------FPDGSLSKVFLNF-PDPWPKKRHNKRRITQPHFLKEYANVLK-K 124 (194)
T ss_pred ---h--------------------------------CCCCceeEEEEEC-CCcCCCCCccccccCCHHHHHHHHHHhC-C
Confidence 0 1123688887654 33333322 122568899999999 9
Q ss_pred CcEEEEec
Q 045407 270 GGIFVMDL 277 (382)
Q Consensus 270 GGiFVfDl 277 (382)
||.|+|-.
T Consensus 125 gG~l~~~t 132 (194)
T TIGR00091 125 GGVIHFKT 132 (194)
T ss_pred CCEEEEEe
Confidence 99999844
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=1.7e-10 Score=107.03 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=74.6
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.++..|++.. ...+|+|||++++|++.|+++... .+..+|.++++|+....
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~----~g~~~v~~~~gd~~~~~------------- 140 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK----LGYDNVEVIVGDGTLGY------------- 140 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCCeEEEECCcccCC-------------
Confidence 479999999999999998873 445899999999999999987432 23347999999986543
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
....+||+|++.+.. ++ ....+++.|+ |||++
T Consensus 141 -------------------------------------~~~~~fD~I~~~~~~----~~------~~~~l~~~Lk-pgG~l 172 (212)
T PRK13942 141 -------------------------------------EENAPYDRIYVTAAG----PD------IPKPLIEQLK-DGGIM 172 (212)
T ss_pred -------------------------------------CcCCCcCEEEECCCc----cc------chHHHHHhhC-CCcEE
Confidence 014579999886532 21 2235666898 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+-+-
T Consensus 173 vi~~~ 177 (212)
T PRK13942 173 VIPVG 177 (212)
T ss_pred EEEEc
Confidence 99763
No 82
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=1.5e-10 Score=113.50 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=84.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||-|.+++..|++- ..+|+||+||++++++|+++..+ .+- ..+|.+.-+|.+++.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~-~gl--~~~v~v~l~d~rd~~-------------- 135 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAA-RGL--EDNVEVRLQDYRDFE-------------- 135 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHH-cCC--CcccEEEeccccccc--------------
Confidence 479999999999999999883 35899999999999999997543 111 137999999998876
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
++||-|||.- .|=|+-. +....||+.+++.|+ |||+++
T Consensus 136 ---------------------------------------e~fDrIvSvg-mfEhvg~-~~~~~ff~~~~~~L~-~~G~~l 173 (283)
T COG2230 136 ---------------------------------------EPFDRIVSVG-MFEHVGK-ENYDDFFKKVYALLK-PGGRML 173 (283)
T ss_pred ---------------------------------------cccceeeehh-hHHHhCc-ccHHHHHHHHHhhcC-CCceEE
Confidence 3499999986 6666655 678999999999999 899999
Q ss_pred Eec
Q 045407 275 MDL 277 (382)
Q Consensus 275 fDl 277 (382)
+=.
T Consensus 174 lh~ 176 (283)
T COG2230 174 LHS 176 (283)
T ss_pred EEE
Confidence 833
No 83
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.19 E-value=2.3e-10 Score=105.63 Aligned_cols=100 Identities=18% Similarity=0.142 Sum_probs=75.2
Q ss_pred CCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+|||+|||||.++..|++... ..+|+|||+|++|+++|+++... . +..++.++++|+.+...
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~-~---g~~~v~~~~~d~~~~~~----------- 142 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK-L---GLDNVIVIVGDGTQGWE----------- 142 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-C---CCCCeEEEECCcccCCc-----------
Confidence 35799999999999999998853 35699999999999999987532 2 23478999999865430
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
...+||+|++.... ..+...+.+.|+ |||+
T Consensus 143 ---------------------------------------~~~~fD~Ii~~~~~----------~~~~~~~~~~L~-~gG~ 172 (215)
T TIGR00080 143 ---------------------------------------PLAPYDRIYVTAAG----------PKIPEALIDQLK-EGGI 172 (215)
T ss_pred ---------------------------------------ccCCCCEEEEcCCc----------ccccHHHHHhcC-cCcE
Confidence 13579999875421 122345778898 9999
Q ss_pred EEEecc
Q 045407 273 FVMDLY 278 (382)
Q Consensus 273 FVfDl~ 278 (382)
||+-+.
T Consensus 173 lv~~~~ 178 (215)
T TIGR00080 173 LVMPVG 178 (215)
T ss_pred EEEEEc
Confidence 999764
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=3.1e-10 Score=104.52 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=74.7
Q ss_pred CcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||.++..+++.-. ..+|+|+|+|++|+++|+++... .+- ..++.++++|..+...
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~-~~~--~~~v~~~~~d~~~~~~------------ 138 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER-LGY--WGVVEVYHGDGKRGLE------------ 138 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCC--CCcEEEEECCcccCCc------------
Confidence 4799999999999999988632 35899999999999999987422 111 1268999999865430
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
...+||+|++.... ..+. ..+++.|+ |||++
T Consensus 139 --------------------------------------~~~~fD~Ii~~~~~-~~~~---------~~l~~~L~-~gG~l 169 (205)
T PRK13944 139 --------------------------------------KHAPFDAIIVTAAA-STIP---------SALVRQLK-DGGVL 169 (205)
T ss_pred --------------------------------------cCCCccEEEEccCc-chhh---------HHHHHhcC-cCcEE
Confidence 13579999987643 3222 35678899 99999
Q ss_pred EEeccC
Q 045407 274 VMDLYG 279 (382)
Q Consensus 274 VfDl~g 279 (382)
|+.+..
T Consensus 170 vi~~~~ 175 (205)
T PRK13944 170 VIPVEE 175 (205)
T ss_pred EEEEcC
Confidence 998753
No 85
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=2.5e-10 Score=110.66 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=74.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.++..+++.|. .+|+|+|+|+.||+.|+++.... + -..++.++.++...+.
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n-~--~~~~~~~~~~~~~~~~-------------- 222 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELN-Q--VSDRLQVKLIYLEQPI-------------- 222 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-C--CCcceEEEeccccccc--------------
Confidence 5799999999999999999886 48999999999999999975321 1 1124555655532111
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
..+||+|+|-. + ...+...+..+++.|+ |||+|+
T Consensus 223 --------------------------------------~~~fDlVvan~-----~--~~~l~~ll~~~~~~Lk-pgG~li 256 (288)
T TIGR00406 223 --------------------------------------EGKADVIVANI-----L--AEVIKELYPQFSRLVK-PGGWLI 256 (288)
T ss_pred --------------------------------------CCCceEEEEec-----C--HHHHHHHHHHHHHHcC-CCcEEE
Confidence 35799999842 1 2467789999999999 999999
Q ss_pred Ee
Q 045407 275 MD 276 (382)
Q Consensus 275 fD 276 (382)
+-
T Consensus 257 ~s 258 (288)
T TIGR00406 257 LS 258 (288)
T ss_pred EE
Confidence 94
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=99.18 E-value=2.3e-10 Score=100.90 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcc-eEEE
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSR-ISLF 172 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~R-I~l~ 172 (382)
|..|..++...+.. .. ...|||+|||+|.++..+++++ .+|+|+|+|++|++.|+++... .+- ..+ +.++
T Consensus 8 p~~~~~~l~~~~~~-~~---~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~-~~~--~~~~~~~~ 78 (188)
T PRK14968 8 PAEDSFLLAENAVD-KK---GDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKL-NNI--RNNGVEVI 78 (188)
T ss_pred cchhHHHHHHhhhc-cC---CCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHH-cCC--CCcceEEE
Confidence 44555555555543 12 3469999999999999999996 5799999999999999887422 111 112 8889
Q ss_pred eccCCCch
Q 045407 173 HGNVLQPL 180 (382)
Q Consensus 173 ~gDV~~~~ 180 (382)
++|+.++.
T Consensus 79 ~~d~~~~~ 86 (188)
T PRK14968 79 RSDLFEPF 86 (188)
T ss_pred eccccccc
Confidence 99986543
No 87
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.18 E-value=5.4e-10 Score=100.87 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=87.3
Q ss_pred HHHHhhcCChhhHHH---HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccc
Q 045407 86 LYQQSVQSPKGDISY---LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKV 161 (382)
Q Consensus 86 LYd~~vq~p~~Di~y---l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl 161 (382)
+|+.+...+ +...+ +..+..++..-+....|||+|||||.++..++++. ...+|+|+|+|+.+ ..
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~---- 71 (188)
T TIGR00438 3 YYQKAKKEK-YRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI---- 71 (188)
T ss_pred HHHHHhhcC-CchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC----
Confidence 566666555 44322 23344444332334579999999999999998875 44579999999965 11
Q ss_pred cCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE
Q 045407 162 GADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA 241 (382)
Q Consensus 162 ~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a 241 (382)
..+.++++|+.++... ..+. ..+..+.||+|++
T Consensus 72 -----~~i~~~~~d~~~~~~~-----------~~l~-------------------------------~~~~~~~~D~V~~ 104 (188)
T TIGR00438 72 -----ENVDFIRGDFTDEEVL-----------NKIR-------------------------------ERVGDDKVDVVMS 104 (188)
T ss_pred -----CCceEEEeeCCChhHH-----------HHHH-------------------------------HHhCCCCccEEEc
Confidence 2478899998775410 0000 0011356999997
Q ss_pred cc---c----hhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCc
Q 045407 242 FN---Y----SCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTS 282 (382)
Q Consensus 242 fn---~----S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s 282 (382)
-. + ++.++...+.+...|+.+++.|+ |||.|++-++.+..
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~~~~~~ 151 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVKVFQGEE 151 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEccCcc
Confidence 32 1 12222233456789999999999 99999997665443
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.17 E-value=2.7e-10 Score=86.69 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=79.5
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+|+|+|||+|.++..+++. ...+++|+|+|+.++.++++.... ....++.++++|+.++..
T Consensus 1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------- 61 (107)
T cd02440 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAAA----LLADNVEVLKGDAEELPP-------------- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhc----ccccceEEEEcChhhhcc--------------
Confidence 3789999999999999983 335899999999999999853211 123579999999876651
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
...+++|+|++... +.++ .+....+++.+.+.|+ +||+|++
T Consensus 62 -----------------------------------~~~~~~d~i~~~~~-~~~~--~~~~~~~l~~~~~~l~-~~g~~~~ 102 (107)
T cd02440 62 -----------------------------------EADESFDVIISDPP-LHHL--VEDLARFLEEARRLLK-PGGVLVL 102 (107)
T ss_pred -----------------------------------ccCCceEEEEEccc-eeeh--hhHHHHHHHHHHHHcC-CCCEEEE
Confidence 01467999988763 3332 5788999999999998 9999997
Q ss_pred e
Q 045407 276 D 276 (382)
Q Consensus 276 D 276 (382)
-
T Consensus 103 ~ 103 (107)
T cd02440 103 T 103 (107)
T ss_pred E
Confidence 4
No 89
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.17 E-value=2.8e-10 Score=113.43 Aligned_cols=193 Identities=16% Similarity=0.217 Sum_probs=118.2
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCC----C---CcceEEEeccCCCchhhhhc
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGAD----G---YSRISLFHGNVLQPLEAKLV 185 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d----~---~~RI~l~~gDV~~~~~~~~~ 185 (382)
....|||||||-|-=..-|.+.+.. .++|+|+|.++|+.|+++... +... . .-...++.+|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~-~~vg~Dis~~si~ea~~Ry~~-~~~~~~~~~~~~~f~a~f~~~D~f~~~----- 134 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK-HYVGIDISEESIEEARERYKQ-LKKRNNSKQYRFDFIAEFIAADCFSES----- 134 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHH-HHTSTT-HTSEECCEEEEEESTTCCSH-----
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC-EEEEEeCCHHHHHHHHHHHHH-hccccccccccccchhheeccccccch-----
Confidence 3578999999998888999999884 999999999999999999722 1100 0 023556777754332
Q ss_pred ccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCC--CCCccEEEEccchhcccCChhHHHHHHHHHH
Q 045407 186 RYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSS--LPARDIICAFNYSCCCLHKRADLVLYFKHVL 263 (382)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~ 263 (382)
+. ..+. ..+||+|.|.+.-+-.|.+++.....|++|.
T Consensus 135 ------------l~-----------------------------~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs 173 (331)
T PF03291_consen 135 ------------LR-----------------------------EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVS 173 (331)
T ss_dssp ------------HH-----------------------------CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHH
T ss_pred ------------hh-----------------------------hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHH
Confidence 10 0011 2479999999977778889999999999999
Q ss_pred hhccCCCcEEEEeccCCCchhhhhHhh------hccCC--eEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeE
Q 045407 264 HALSKKGGIFVMDLYGGTSSEQKLRLQ------RRFAN--FTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNW 335 (382)
Q Consensus 264 ~~L~~pGGiFVfDl~gg~s~e~kl~~~------R~~~~--~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~ 335 (382)
.+|+ |||+||.=+..+.....+++.. ..+++ +...|+...+-|. .-...+|++.+- .....+
T Consensus 174 ~~Lk-~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~---fG~~Y~F~L~~~---v~~~~E--- 243 (331)
T PF03291_consen 174 SLLK-PGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPP---FGAKYDFYLEDA---VDDCPE--- 243 (331)
T ss_dssp HTEE-EEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCSS--C---TTEEEEEEETTC---SSCEEE---
T ss_pred HhcC-CCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecccCCCCC---CCcEEEEEecCc---CCCCce---
Confidence 9999 9999999655433333333221 11222 3333555312221 123445555332 122223
Q ss_pred EecCHHHHHHHHHHcCCcEEEEEeccCchh
Q 045407 336 RLWSLPEIKDCLEEAGFRSVHFWLREMPDA 365 (382)
Q Consensus 336 Rlysl~EI~d~LeeAGF~~V~v~~r~~~~~ 365 (382)
-|-..+-+.+++++.||..|.. ..+.+-
T Consensus 244 YlV~~~~~~~la~eyGLeLV~~--~~F~ef 271 (331)
T PF03291_consen 244 YLVPFDFFVKLAKEYGLELVEK--KNFHEF 271 (331)
T ss_dssp E---HHHHHHHHHHTTEEEEEE--EEHHHH
T ss_pred EEeeHHHHHHHHHHcCCEEEEe--CChHHH
Confidence 5778899999999999998864 344444
No 90
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.16 E-value=2.5e-11 Score=116.49 Aligned_cols=118 Identities=20% Similarity=0.198 Sum_probs=85.8
Q ss_pred hhhH-HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 95 KGDI-SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 95 ~~Di-~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
.|.+ .++...+..-..|+ -.|+||||||||+.+.+|-.+-- +.+|||||..||+.|.+|- .|. .|++
T Consensus 107 ~Y~vP~~l~emI~~~~~g~-F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg-------~YD--~L~~ 174 (287)
T COG4976 107 GYSVPELLAEMIGKADLGP-FRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKG-------LYD--TLYV 174 (287)
T ss_pred cCccHHHHHHHHHhccCCc-cceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhcc-------chH--HHHH
Confidence 4444 34444444322333 57899999999999999876664 5999999999999999984 232 3566
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
++...+.. +....+||+|++. +.+-||-
T Consensus 175 Aea~~Fl~------------------------------------------------~~~~er~DLi~Aa-DVl~YlG--- 202 (287)
T COG4976 175 AEAVLFLE------------------------------------------------DLTQERFDLIVAA-DVLPYLG--- 202 (287)
T ss_pred HHHHHHhh------------------------------------------------hccCCcccchhhh-hHHHhhc---
Confidence 66543331 0124679999987 7999986
Q ss_pred HHHHHHHHHHhhccCCCcEEEEec
Q 045407 254 DLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+|...|--|..+|+ |||+|.|-+
T Consensus 203 ~Le~~~~~aa~~L~-~gGlfaFSv 225 (287)
T COG4976 203 ALEGLFAGAAGLLA-PGGLFAFSV 225 (287)
T ss_pred chhhHHHHHHHhcC-CCceEEEEe
Confidence 56778889999999 999999955
No 91
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.13 E-value=5.6e-10 Score=103.76 Aligned_cols=112 Identities=12% Similarity=0.119 Sum_probs=77.2
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..|||+|||||.++..++++. +..+|+|||+++ |. . + ..+.++++|+.++..- ++|.
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~------~---~-----~~v~~i~~D~~~~~~~-------~~i~ 110 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD------P---I-----VGVDFLQGDFRDELVL-------KALL 110 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc------C---C-----CCcEEEecCCCChHHH-------HHHH
Confidence 479999999999999998885 445899999998 31 1 1 2488999999886510 0000
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh--------HHHHHHHHHHhh
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA--------DLVLYFKHVLHA 265 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~--------dL~~yFr~V~~~ 265 (382)
.. +....||+|+|-. +.++..++. .+...++.+++.
T Consensus 111 ~~-----------------------------------~~~~~~D~V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~ 154 (209)
T PRK11188 111 ER-----------------------------------VGDSKVQVVMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDV 154 (209)
T ss_pred HH-----------------------------------hCCCCCCEEecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1246799999833 333332211 135789999999
Q ss_pred ccCCCcEEEEeccCCCchhh
Q 045407 266 LSKKGGIFVMDLYGGTSSEQ 285 (382)
Q Consensus 266 L~~pGGiFVfDl~gg~s~e~ 285 (382)
|+ |||+|++-++.+..+..
T Consensus 155 Lk-pGG~~vi~~~~~~~~~~ 173 (209)
T PRK11188 155 LA-PGGSFVVKVFQGEGFDE 173 (209)
T ss_pred cC-CCCEEEEEEecCcCHHH
Confidence 99 99999998887665443
No 92
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.11 E-value=8.4e-10 Score=105.37 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=48.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
+.++||+|||+|.++..+++..+..+|+|+|+|+.|+++|++|... ..+.++++|+.++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~-------~~~~~~~~D~~~~ 145 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD-------AGGTVHEGDLYDA 145 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-------cCCEEEEeechhh
Confidence 3479999999999999999886656899999999999999998522 1247899998654
No 93
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.09 E-value=9.3e-10 Score=113.07 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=51.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++..|++..+..+|+|+|+|++||++|++|... .+.++.++++|+.++.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~-----~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD-----LGARVEFAHGSWFDTD 313 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-----cCCcEEEEEcchhccc
Confidence 479999999999999999887777999999999999999998532 1248999999986643
No 94
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.08 E-value=5.8e-10 Score=105.66 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=38.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
+.+|||+|||||.++..+++.|.. .|+|+|+|+.|++.|+++.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENA 162 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHH
Confidence 457999999999999999998874 6999999999999999985
No 95
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.08 E-value=5.3e-10 Score=106.88 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=89.1
Q ss_pred CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccch
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
.+..|.-|||+|||||+-+..|...| +..+|||+|+.||+.|++.-++ -.|+.+||-+..
T Consensus 47 p~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e~e---------gdlil~DMG~Gl--------- 106 (270)
T KOG1541|consen 47 PGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERELE---------GDLILCDMGEGL--------- 106 (270)
T ss_pred CCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhhhh---------cCeeeeecCCCC---------
Confidence 44468889999999999999999999 4799999999999999986432 247889997654
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhccc-------CChhHHHHHHHHH
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCL-------HKRADLVLYFKHV 262 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL-------~~r~dL~~yFr~V 262 (382)
.|..++||.|++....=|-+ ....-|..+|...
T Consensus 107 ----------------------------------------pfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tL 146 (270)
T KOG1541|consen 107 ----------------------------------------PFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTL 146 (270)
T ss_pred ----------------------------------------CCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhh
Confidence 14578899998765332111 2345688899999
Q ss_pred HhhccCCCcEEEEeccCCCchh
Q 045407 263 LHALSKKGGIFVMDLYGGTSSE 284 (382)
Q Consensus 263 ~~~L~~pGGiFVfDl~gg~s~e 284 (382)
|.+|+ +|+.+||-+|..+...
T Consensus 147 y~~l~-rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 147 YSCLK-RGARAVLQFYPENEAQ 167 (270)
T ss_pred hhhhc-cCceeEEEecccchHH
Confidence 99999 9999999999766543
No 96
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=4.4e-10 Score=106.61 Aligned_cols=110 Identities=16% Similarity=0.088 Sum_probs=82.7
Q ss_pred CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceE-EEeccCCCchhhhhcccc
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRIS-LFHGNVLQPLEAKLVRYE 188 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~-l~~gDV~~~~~~~~~~~~ 188 (382)
+...-..|||+|||||.. ..+..--+..+||+||-++.|-++|.++..++ ....+. |++++-.+++.
T Consensus 73 gk~~K~~vLEvgcGtG~N-fkfy~~~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~------- 140 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGAN-FKFYPWKPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQ------- 140 (252)
T ss_pred cccCccceEEecccCCCC-cccccCCCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcc-------
Confidence 333334689999999998 44444223468999999999999999987553 234666 88888766652
Q ss_pred hhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccC
Q 045407 189 PQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~ 268 (382)
| ....+|+|||.+ +|-+-++.++.++++.+.|+
T Consensus 141 ---------l---------------------------------~d~s~DtVV~Tl----vLCSve~~~k~L~e~~rlLR- 173 (252)
T KOG4300|consen 141 ---------L---------------------------------ADGSYDTVVCTL----VLCSVEDPVKQLNEVRRLLR- 173 (252)
T ss_pred ---------c---------------------------------ccCCeeeEEEEE----EEeccCCHHHHHHHHHHhcC-
Confidence 1 257799999997 33355788999999999999
Q ss_pred CCcEEEEecc
Q 045407 269 KGGIFVMDLY 278 (382)
Q Consensus 269 pGGiFVfDl~ 278 (382)
|||+++|==|
T Consensus 174 pgG~iifiEH 183 (252)
T KOG4300|consen 174 PGGRIIFIEH 183 (252)
T ss_pred CCcEEEEEec
Confidence 9999999444
No 97
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.05 E-value=4e-10 Score=108.48 Aligned_cols=120 Identities=15% Similarity=0.162 Sum_probs=86.0
Q ss_pred CChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 93 SPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 93 ~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
-|.|-.+++.+++... .++. .++|+|||||.-+.-+| .-+. .|||+|+|++||..|+++. ++...
T Consensus 16 RP~YPtdw~~~ia~~~-~~h~--~a~DvG~G~Gqa~~~ia-e~~k-~VIatD~s~~mL~~a~k~~----------~~~y~ 80 (261)
T KOG3010|consen 16 RPSYPTDWFKKIASRT-EGHR--LAWDVGTGNGQAARGIA-EHYK-EVIATDVSEAMLKVAKKHP----------PVTYC 80 (261)
T ss_pred CCCCcHHHHHHHHhhC-CCcc--eEEEeccCCCcchHHHH-Hhhh-hheeecCCHHHHHHhhcCC----------Ccccc
Confidence 4778899999998864 3332 68899999995544444 4464 7999999999999999874 22222
Q ss_pred ecc--CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCC--CCCccEEEEccchhcc
Q 045407 173 HGN--VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSS--LPARDIICAFNYSCCC 248 (382)
Q Consensus 173 ~gD--V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fDiV~afn~S~~y 248 (382)
+.- |.+-+ |-++. ...+|+|+|.--.+++
T Consensus 81 ~t~~~ms~~~-----------------------------------------------~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 81 HTPSTMSSDE-----------------------------------------------MVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred cCCccccccc-----------------------------------------------cccccCCCcceeeehhhhhHHhh
Confidence 211 11000 00111 4679999999878876
Q ss_pred cCChhHHHHHHHHHHhhccCCCcEEEEeccC
Q 045407 249 LHKRADLVLYFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 249 L~~r~dL~~yFr~V~~~L~~pGGiFVfDl~g 279 (382)
+|.+.++.|++.|+|+||++.+=.|+
T Consensus 114 -----dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 -----DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred -----chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 89999999999999999999985554
No 98
>PRK00811 spermidine synthase; Provisional
Probab=99.03 E-value=9.5e-10 Score=106.68 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=81.6
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccC--CCCcceEEEeccCCCchhhhhcccch
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGA--DGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~--d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
..|.+||++|||+|.++.++++...-.+|++||||++|++.|++.... +.. -...|+.++.+|.++...
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~-~~~~~~~d~rv~v~~~Da~~~l~-------- 145 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPE-IAGGAYDDPRVELVIGDGIKFVA-------- 145 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHH-hccccccCCceEEEECchHHHHh--------
Confidence 347899999999999999999874335899999999999999986422 111 123589999999876441
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhcc
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHALS 267 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~ 267 (382)
....+||+|++-.+.-. .....| ..+|+.+++.|+
T Consensus 146 -----------------------------------------~~~~~yDvIi~D~~dp~--~~~~~l~t~ef~~~~~~~L~ 182 (283)
T PRK00811 146 -----------------------------------------ETENSFDVIIVDSTDPV--GPAEGLFTKEFYENCKRALK 182 (283)
T ss_pred -----------------------------------------hCCCcccEEEECCCCCC--CchhhhhHHHHHHHHHHhcC
Confidence 01357999998432111 111222 678899999999
Q ss_pred CCCcEEEEec
Q 045407 268 KKGGIFVMDL 277 (382)
Q Consensus 268 ~pGGiFVfDl 277 (382)
|||+||+-.
T Consensus 183 -~gGvlv~~~ 191 (283)
T PRK00811 183 -EDGIFVAQS 191 (283)
T ss_pred -CCcEEEEeC
Confidence 999999853
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.03 E-value=2.1e-09 Score=105.74 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=78.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..|||.|||||.++++.+..|. +|+|+|+|+.|++.|++|... . +...+.++++|+.+++
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~-~---g~~~i~~~~~D~~~l~-------------- 243 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEH-Y---GIEDFFVKRGDATKLP-------------- 243 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHH-h---CCCCCeEEecchhcCC--------------
Confidence 4799999999999999988874 699999999999999987532 1 2223789999998766
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc-chh--c-ccCCh-hHHHHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN-YSC--C-CLHKR-ADLVLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn-~S~--~-yL~~r-~dL~~yFr~V~~~L~~p 269 (382)
+ ....||+|++-- |.. . --+.. .-....++.+++.|+ |
T Consensus 244 ---~---------------------------------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk-~ 286 (329)
T TIGR01177 244 ---L---------------------------------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK-S 286 (329)
T ss_pred ---c---------------------------------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc-C
Confidence 1 135689888721 111 0 00111 234788999999999 9
Q ss_pred CcEEEEeccC
Q 045407 270 GGIFVMDLYG 279 (382)
Q Consensus 270 GGiFVfDl~g 279 (382)
||.+++-+-.
T Consensus 287 gG~lv~~~~~ 296 (329)
T TIGR01177 287 EGWIVYAVPT 296 (329)
T ss_pred CcEEEEEEcC
Confidence 9999986643
No 100
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.03 E-value=2.8e-09 Score=97.76 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=74.0
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|||+|||||.++..|++.+. +|+|+|+|++|++.|+++... .+...+.++++|..+..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~----~~~~~v~~~~~d~~~~~------------- 139 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQ----LGLHNVSVRHGDGWKGW------------- 139 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHH----CCCCceEEEECCcccCC-------------
Confidence 35799999999999998888863 799999999999999987432 13345899999975432
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ...+||+|++.+ ++.++ .+.+++.|+ |||++
T Consensus 140 ----~---------------------------------~~~~fD~I~~~~-~~~~~---------~~~l~~~L~-~gG~l 171 (212)
T PRK00312 140 ----P---------------------------------AYAPFDRILVTA-AAPEI---------PRALLEQLK-EGGIL 171 (212)
T ss_pred ----C---------------------------------cCCCcCEEEEcc-Cchhh---------hHHHHHhcC-CCcEE
Confidence 0 135799999865 33322 245678999 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+.+.
T Consensus 172 v~~~~ 176 (212)
T PRK00312 172 VAPVG 176 (212)
T ss_pred EEEEc
Confidence 99875
No 101
>PHA03411 putative methyltransferase; Provisional
Probab=99.03 E-value=1.5e-09 Score=106.37 Aligned_cols=57 Identities=14% Similarity=0.014 Sum_probs=48.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++..++++....+|+|||+|+.|+++|+++. .++.++++|++++.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~ 122 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFE 122 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhc
Confidence 4699999999999999988764468999999999999999863 25789999997654
No 102
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.01 E-value=1.8e-09 Score=110.03 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=82.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..+||+|||+|.++..+|++.+...++|||+++.|++.|+++... .+-.+|.++++|+..+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~----~gL~NV~~i~~DA~~ll~------------- 186 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL----LNLKNLLIINYDARLLLE------------- 186 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH----cCCCcEEEEECCHHHhhh-------------
Confidence 368899999999999999999989999999999999999988533 233469999999865431
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh---HHHHHHHHHHhhccCCCc
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA---DLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~---dL~~yFr~V~~~L~~pGG 271 (382)
. ++...+|.|++. +..=|..++. .....++.+++.|+ |||
T Consensus 187 ---~--------------------------------~~~~s~D~I~ln-FPdPW~KkrHRRlv~~~fL~e~~RvLk-pGG 229 (390)
T PRK14121 187 ---L--------------------------------LPSNSVEKIFVH-FPVPWDKKPHRRVISEDFLNEALRVLK-PGG 229 (390)
T ss_pred ---h--------------------------------CCCCceeEEEEe-CCCCccccchhhccHHHHHHHHHHHcC-CCc
Confidence 0 224678999864 3444543332 23578999999999 999
Q ss_pred EEEE
Q 045407 272 IFVM 275 (382)
Q Consensus 272 iFVf 275 (382)
.|.+
T Consensus 230 ~l~l 233 (390)
T PRK14121 230 TLEL 233 (390)
T ss_pred EEEE
Confidence 9998
No 103
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.01 E-value=1.5e-09 Score=113.44 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=50.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
+.+|||+|||||.+++.+++.-+..+|+|+|+|+.||++|++|... .+ -..+|.++++|+.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~-~~--l~~~v~~~~~D~~~ 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK-YE--VTDRIQIIHSNWFE 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH-cC--Cccceeeeecchhh
Confidence 4579999999999999999887667899999999999999998532 11 11379999999854
No 104
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.00 E-value=3.9e-09 Score=101.80 Aligned_cols=179 Identities=19% Similarity=0.248 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHhhC--CCCCCcccccCCCccHhHHHHHHhCCC--CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEE
Q 045407 97 DISYLQKFFLIYVG--GRQPLHLQEDFCGTALLSTEWLRSDSR--RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLF 172 (382)
Q Consensus 97 Di~yl~~~f~~y~g--gr~p~~LLEl~CGTG~LS~elar~g~~--~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~ 172 (382)
|-.||.+-|..+.. ...|..|||+|||.|...-.+++.-+. -.|.+.|.||.+++.-+++..- .-+++.-+
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-----~e~~~~af 127 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-----DESRVEAF 127 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-----chhhhccc
Confidence 55788877766653 233457999999999999999998877 7899999999999998887422 12466555
Q ss_pred eccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh
Q 045407 173 HGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR 252 (382)
Q Consensus 173 ~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r 252 (382)
..|...+.+ . .-...+.+|+|++.+ .+-=++ +
T Consensus 128 v~Dlt~~~~----------------~------------------------------~~~~~~svD~it~IF-vLSAi~-p 159 (264)
T KOG2361|consen 128 VWDLTSPSL----------------K------------------------------EPPEEGSVDIITLIF-VLSAIH-P 159 (264)
T ss_pred ceeccchhc----------------c------------------------------CCCCcCccceEEEEE-EEeccC-h
Confidence 556554441 0 001246799999876 444434 5
Q ss_pred hHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeee
Q 045407 253 ADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFS 332 (382)
Q Consensus 253 ~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fs 332 (382)
+.....+++++..|+ |||.++|==||-... .+.| |. ..-+++-.|.+..+. ..
T Consensus 160 ek~~~a~~nl~~llK-PGG~llfrDYg~~Dl----aqlR-F~---------------~~~~i~~nfYVRgDG-T~----- 212 (264)
T KOG2361|consen 160 EKMQSVIKNLRTLLK-PGGSLLFRDYGRYDL----AQLR-FK---------------KGQCISENFYVRGDG-TR----- 212 (264)
T ss_pred HHHHHHHHHHHHHhC-CCcEEEEeecccchH----HHHh-cc---------------CCceeecceEEccCC-ce-----
Confidence 788999999999999 999999944442222 1222 11 112344555554332 21
Q ss_pred eeEEecCHHHHHHHHHHcCCcEEEE
Q 045407 333 YNWRLWSLPEIKDCLEEAGFRSVHF 357 (382)
Q Consensus 333 y~~Rlysl~EI~d~LeeAGF~~V~v 357 (382)
...|+.+++..++.+|||..+..
T Consensus 213 --~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 213 --AYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred --eeeccHHHHHHHHHhcccchhcc
Confidence 13678999999999999988764
No 105
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.00 E-value=3.6e-09 Score=100.05 Aligned_cols=126 Identities=19% Similarity=0.225 Sum_probs=88.6
Q ss_pred cCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceE
Q 045407 92 QSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRIS 170 (382)
Q Consensus 92 q~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~ 170 (382)
+-++....||..+.... .|.++||+|||||.-+..+++. +...+|+++|+|++++++|+++... .+- ..+|.
T Consensus 51 ~v~~~~g~~L~~l~~~~----~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~-~gl--~~~i~ 123 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIM----NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK-AGV--DHKIN 123 (234)
T ss_pred ccCHHHHHHHHHHHHHh----CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCC--CCcEE
Confidence 33444446666655542 2568999999999988877765 3356899999999999999998432 221 24799
Q ss_pred EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC
Q 045407 171 LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH 250 (382)
Q Consensus 171 l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~ 250 (382)
+++||..+... . +. .+...++||+|++=.+
T Consensus 124 ~~~gda~~~L~-------------~--l~-----------------------------~~~~~~~fD~VfiDa~------ 153 (234)
T PLN02781 124 FIQSDALSALD-------------Q--LL-----------------------------NNDPKPEFDFAFVDAD------ 153 (234)
T ss_pred EEEccHHHHHH-------------H--HH-----------------------------hCCCCCCCCEEEECCC------
Confidence 99999876431 0 00 0000257999977432
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
......||..+.+.|+ |||++|+|
T Consensus 154 -k~~y~~~~~~~~~ll~-~GG~ii~d 177 (234)
T PLN02781 154 -KPNYVHFHEQLLKLVK-VGGIIAFD 177 (234)
T ss_pred -HHHHHHHHHHHHHhcC-CCeEEEEE
Confidence 2566789999999999 99999997
No 106
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.99 E-value=9.5e-10 Score=104.89 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=87.4
Q ss_pred hCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccc
Q 045407 109 VGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYE 188 (382)
Q Consensus 109 ~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~ 188 (382)
+.-.-|..|.|||||||..+..|+++-+.++++|||-|++||+-|+++. ..++|..+|+++..
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w~-------- 88 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTWK-------- 88 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhcC--------
Confidence 3444467899999999999999999999999999999999999998874 35789999998776
Q ss_pred hhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccC
Q 045407 189 PQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSK 268 (382)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~ 268 (382)
+....|+++| |.++-||.+- ...|.+....|.
T Consensus 89 -------------------------------------------p~~~~dllfa-NAvlqWlpdH---~~ll~rL~~~L~- 120 (257)
T COG4106 89 -------------------------------------------PEQPTDLLFA-NAVLQWLPDH---PELLPRLVSQLA- 120 (257)
T ss_pred -------------------------------------------CCCccchhhh-hhhhhhcccc---HHHHHHHHHhhC-
Confidence 1356788877 5688888754 567889999999
Q ss_pred CCcEEEEecc
Q 045407 269 KGGIFVMDLY 278 (382)
Q Consensus 269 pGGiFVfDl~ 278 (382)
|||++-.-|=
T Consensus 121 Pgg~LAVQmP 130 (257)
T COG4106 121 PGGVLAVQMP 130 (257)
T ss_pred CCceEEEECC
Confidence 9999988653
No 107
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.99 E-value=1.2e-09 Score=101.95 Aligned_cols=122 Identities=23% Similarity=0.258 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcc-eEEEeccCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSR-ISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~R-I~l~~gDV~ 177 (382)
+|+......|--+....+|||||||.|.+...|++.|.+...+|||+|+.+++.|...+.. ++.+. |.|-|.|+.
T Consensus 53 ~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~----~~~~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 53 DWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER----DGFSNEIRFQQLDIT 128 (227)
T ss_pred HHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh----cCCCcceeEEEeecc
Confidence 5555544322112223378999999999999999999998899999999999998876532 33333 999999999
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE--ccc--hhcccCChh
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA--FNY--SCCCLHKRA 253 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a--fn~--S~~yL~~r~ 253 (382)
+|.+ + .++||+|.- ..+ |++=-.-..
T Consensus 129 ~~~~----------------~----------------------------------~~qfdlvlDKGT~DAisLs~d~~~~ 158 (227)
T KOG1271|consen 129 DPDF----------------L----------------------------------SGQFDLVLDKGTLDAISLSPDGPVG 158 (227)
T ss_pred CCcc----------------c----------------------------------ccceeEEeecCceeeeecCCCCccc
Confidence 9873 1 334444431 111 222111224
Q ss_pred HHHHHHHHHHhhccCCCcEEEE
Q 045407 254 DLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVf 275 (382)
-+..|+-.|...|+ ||||||+
T Consensus 159 r~~~Y~d~v~~ll~-~~gifvI 179 (227)
T KOG1271|consen 159 RLVVYLDSVEKLLS-PGGIFVI 179 (227)
T ss_pred ceeeehhhHhhccC-CCcEEEE
Confidence 55889999999999 9999999
No 108
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2.8e-09 Score=105.34 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEE----Eec
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISL----FHG 174 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l----~~g 174 (382)
.++.+.+.+|+. .+..+||+|||||.||+..++.|.. .|+|+|+||-+++.|++|... ..|.. -..
T Consensus 150 ~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eNa~~-------N~v~~~~~~~~~ 219 (300)
T COG2264 150 SLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARENARL-------NGVELLVQAKGF 219 (300)
T ss_pred HHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHHHHH-------cCCchhhhcccc
Confidence 556677777653 4678999999999999999999984 899999999999999998532 12221 111
Q ss_pred cCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH
Q 045407 175 NVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD 254 (382)
Q Consensus 175 DV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d 254 (382)
+.... ....+||+|||-. +. .-
T Consensus 220 ~~~~~---------------------------------------------------~~~~~~DvIVANI--LA-----~v 241 (300)
T COG2264 220 LLLEV---------------------------------------------------PENGPFDVIVANI--LA-----EV 241 (300)
T ss_pred cchhh---------------------------------------------------cccCcccEEEehh--hH-----HH
Confidence 11100 0135899999865 22 46
Q ss_pred HHHHHHHHHhhccCCCcEEEE
Q 045407 255 LVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 255 L~~yFr~V~~~L~~pGGiFVf 275 (382)
++.....++.+|+ |||++|+
T Consensus 242 l~~La~~~~~~lk-pgg~lIl 261 (300)
T COG2264 242 LVELAPDIKRLLK-PGGRLIL 261 (300)
T ss_pred HHHHHHHHHHHcC-CCceEEE
Confidence 7788889999998 9999999
No 109
>PTZ00146 fibrillarin; Provisional
Probab=98.97 E-value=1.1e-08 Score=100.87 Aligned_cols=103 Identities=10% Similarity=0.014 Sum_probs=73.1
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..|||+|||||..+..+++.- +..+|++||+|+.|++...+.+.. ..+|.++.+|++.+..-.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p~~y~---------- 197 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYPQKYR---------- 197 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccChhhhh----------
Confidence 369999999999999999873 345899999999766444433211 135788999987653100
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+..+.+|+|++-+. .+.+...+..++.+.|+ |||.|
T Consensus 198 -------------------------------------~~~~~vDvV~~Dva------~pdq~~il~~na~r~LK-pGG~~ 233 (293)
T PTZ00146 198 -------------------------------------MLVPMVDVIFADVA------QPDQARIVALNAQYFLK-NGGHF 233 (293)
T ss_pred -------------------------------------cccCCCCEEEEeCC------CcchHHHHHHHHHHhcc-CCCEE
Confidence 01346999987662 23455566678999999 99999
Q ss_pred EEec
Q 045407 274 VMDL 277 (382)
Q Consensus 274 VfDl 277 (382)
|+.+
T Consensus 234 vI~i 237 (293)
T PTZ00146 234 IISI 237 (293)
T ss_pred EEEE
Confidence 9963
No 110
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=5.3e-09 Score=101.85 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=49.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
+|+|+|||||.+++.++...+..+|+|+|+|+++|++|++|... . +-.++.++++|...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~-~---~l~~~~~~~~dlf~ 171 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER-N---GLVRVLVVQSDLFE 171 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH-c---CCccEEEEeeeccc
Confidence 79999999999999999999988999999999999999998643 1 11467777776433
No 111
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=3.5e-09 Score=107.97 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=78.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||..+..+++.+...+|+|+|+|+.||+.++++... ++ ..+.++++|+.++..
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~-~g----~~~~~~~~D~~~~~~------------- 307 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR-LG----LKATVIVGDARDPAQ------------- 307 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH-cC----CCeEEEEcCcccchh-------------
Confidence 479999999999999999988656899999999999999988532 22 247899999877541
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhc---------ccCChhHH-------H
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCC---------CLHKRADL-------V 256 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~---------yL~~r~dL-------~ 256 (382)
. +...+||+|++- |...+ |..+.+++ .
T Consensus 308 ---~--------------------------------~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~ 352 (427)
T PRK10901 308 ---W--------------------------------WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQS 352 (427)
T ss_pred ---h--------------------------------cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHH
Confidence 0 113468998831 11222 23333443 4
Q ss_pred HHHHHHHhhccCCCcEEEE
Q 045407 257 LYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVf 275 (382)
..++++++.|+ |||++|+
T Consensus 353 ~iL~~a~~~Lk-pGG~lvy 370 (427)
T PRK10901 353 EILDALWPLLK-PGGTLLY 370 (427)
T ss_pred HHHHHHHHhcC-CCCEEEE
Confidence 68999999999 9999997
No 112
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.96 E-value=9.8e-09 Score=97.76 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc--c------cCCCCcceE
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK--V------GADGYSRIS 170 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k--l------~~d~~~RI~ 170 (382)
.+|.+++... ......+||..|||.|.-+.-||+.|+ +|+|||||+.+++++.+.+... + ....+.+|.
T Consensus 30 p~L~~~~~~l-~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 30 EFLVKHFSKL-NINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred HHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 5676776652 222235799999999999999999996 5999999999999997754110 0 001235799
Q ss_pred EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC
Q 045407 171 LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH 250 (382)
Q Consensus 171 l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~ 250 (382)
++++|+.+++... -..++||+|.=-. ++|-|
T Consensus 107 ~~~gD~f~l~~~~-----------------------------------------------~~~~~fD~VyDra-~~~Al- 137 (226)
T PRK13256 107 IYVADIFNLPKIA-----------------------------------------------NNLPVFDIWYDRG-AYIAL- 137 (226)
T ss_pred EEEccCcCCCccc-----------------------------------------------cccCCcCeeeeeh-hHhcC-
Confidence 9999998775100 0136799976553 55666
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
.++.=.+|.+++.+.|+ |||.++.
T Consensus 138 pp~~R~~Y~~~l~~lL~-pgg~lll 161 (226)
T PRK13256 138 PNDLRTNYAKMMLEVCS-NNTQILL 161 (226)
T ss_pred CHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 45667899999999999 9998877
No 113
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.96 E-value=1.8e-08 Score=100.06 Aligned_cols=163 Identities=19% Similarity=0.212 Sum_probs=101.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.++|||+|||.|-++-+++++|++ .|+|+|=++--+. +-..++++-.. ..++.++---|.+++
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~--QF~~i~~~lg~-~~~~~~lplgvE~Lp------------- 178 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYL--QFEAIKHFLGQ-DPPVFELPLGVEDLP------------- 178 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHH--HHHHHHHHhCC-CccEEEcCcchhhcc-------------
Confidence 347999999999999999999985 8999998885443 33332222110 011222211122211
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
. ...||+|+|+. .+-|.. +-...++.+.++|+ +||.+
T Consensus 179 ----~----------------------------------~~~FDtVF~MG-VLYHrr---~Pl~~L~~Lk~~L~-~gGeL 215 (315)
T PF08003_consen 179 ----N----------------------------------LGAFDTVFSMG-VLYHRR---SPLDHLKQLKDSLR-PGGEL 215 (315)
T ss_pred ----c----------------------------------cCCcCEEEEee-ehhccC---CHHHHHHHHHHhhC-CCCEE
Confidence 0 46799999997 444433 44778899999999 99999
Q ss_pred EEecc--CCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcC
Q 045407 274 VMDLY--GGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAG 351 (382)
Q Consensus 274 VfDl~--gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAG 351 (382)
|++-. .|. ++..++ |..+-.. .+. .|=+=|+.-++.+|+.||
T Consensus 216 vLETlvi~g~------------~~~~L~-------P~~rYa~-------------m~n----v~FiPs~~~L~~wl~r~g 259 (315)
T PF08003_consen 216 VLETLVIDGD------------ENTVLV-------PEDRYAK-------------MRN----VWFIPSVAALKNWLERAG 259 (315)
T ss_pred EEEEeeecCC------------CceEEc-------cCCcccC-------------CCc----eEEeCCHHHHHHHHHHcC
Confidence 99854 110 111111 1111110 011 234568889999999999
Q ss_pred CcEEEEEeccCchhhhhcccc
Q 045407 352 FRSVHFWLREMPDAREMRNTE 372 (382)
Q Consensus 352 F~~V~v~~r~~~~~~~~~~~~ 372 (382)
|+.|++....--+..|-|.|+
T Consensus 260 F~~v~~v~~~~Tt~~EQR~T~ 280 (315)
T PF08003_consen 260 FKDVRCVDVSPTTIEEQRKTD 280 (315)
T ss_pred CceEEEecCccCCHHHhccCC
Confidence 999999865555566666654
No 114
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.96 E-value=4.2e-09 Score=93.75 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=50.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++||+|||+|.++.++++++ .+|+|||+|+.|++.++++.. ...++.++++|+.+..
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~------~~~~v~ii~~D~~~~~ 72 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFA------AADNLTVIHGDALKFD 72 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhc------cCCCEEEEECchhcCC
Confidence 479999999999999999996 479999999999999998752 1247999999998765
No 115
>PLN02672 methionine S-methyltransferase
Probab=98.92 E-value=7.9e-09 Score=116.26 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=53.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cccC-----------CCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KVGA-----------DGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl~~-----------d~~~RI~l~~gDV~~~~ 180 (382)
.+|+|+|||||.+++.+++..+..+|+|+|+|++||++|++|... .+.. ....||.|+++|+.++.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 469999999999999999998877999999999999999998643 1110 11247999999997654
No 116
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.92 E-value=5.6e-09 Score=100.25 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=81.7
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc-CCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG-ADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~-~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+||++|||+|.++.++++.....+|++||+|+++++.|+++... +. .-...++.++.+|.++...
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~-~~~~~~~~~v~i~~~D~~~~l~--------- 140 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPS-LAGSYDDPRVDLQIDDGFKFLA--------- 140 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHh-hcccccCCceEEEECchHHHHH---------
Confidence 347799999999999999999887545899999999999999986322 11 1123478888888755430
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH--HHHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD--LVLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d--L~~yFr~V~~~L~~ 268 (382)
- ...+||+|++-.+.. ...... ...+|+.+++.|+
T Consensus 141 -------~---------------------------------~~~~yDvIi~D~~~~--~~~~~~l~~~ef~~~~~~~L~- 177 (270)
T TIGR00417 141 -------D---------------------------------TENTFDVIIVDSTDP--VGPAETLFTKEFYELLKKALN- 177 (270)
T ss_pred -------h---------------------------------CCCCccEEEEeCCCC--CCcccchhHHHHHHHHHHHhC-
Confidence 0 035799999855321 122222 3578899999999
Q ss_pred CCcEEEEec
Q 045407 269 KGGIFVMDL 277 (382)
Q Consensus 269 pGGiFVfDl 277 (382)
|||+|++..
T Consensus 178 pgG~lv~~~ 186 (270)
T TIGR00417 178 EDGIFVAQS 186 (270)
T ss_pred CCcEEEEcC
Confidence 999999963
No 117
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3.6e-09 Score=98.78 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.|+.....++ |.-....|+|||||||+|++..+-.|+ ++|+|||+|+++|+.|++|..+ ...+|.++.+|+++
T Consensus 32 a~il~~a~~~-g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-----l~g~v~f~~~dv~~ 104 (198)
T COG2263 32 AYILWVAYLR-GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-----LLGDVEFVVADVSD 104 (198)
T ss_pred HHHHHHHHHc-CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-----hCCceEEEEcchhh
Confidence 5665555442 322234699999999999999999998 4999999999999999998643 33589999999988
Q ss_pred ch
Q 045407 179 PL 180 (382)
Q Consensus 179 ~~ 180 (382)
+.
T Consensus 105 ~~ 106 (198)
T COG2263 105 FR 106 (198)
T ss_pred cC
Confidence 77
No 118
>PLN02366 spermidine synthase
Probab=98.90 E-value=7.4e-09 Score=102.35 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=81.3
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc-CCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG-ADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~-~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+||++|||+|.++.++++...-.+|+.||||+++++.|++.... +. .-...|+.++.+|.+....
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~-~~~~~~dpRv~vi~~Da~~~l~--------- 159 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPD-LAVGFDDPRVNLHIGDGVEFLK--------- 159 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhh-hccccCCCceEEEEChHHHHHh---------
Confidence 448899999999999999999875445799999999999999997532 11 1123589999999765531
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH--HHHHHHHHHhhccC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD--LVLYFKHVLHALSK 268 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d--L~~yFr~V~~~L~~ 268 (382)
+.....||+|++-.+.-. ..... -..+|+.++++|+
T Consensus 160 ---------------------------------------~~~~~~yDvIi~D~~dp~--~~~~~L~t~ef~~~~~~~L~- 197 (308)
T PLN02366 160 ---------------------------------------NAPEGTYDAIIVDSSDPV--GPAQELFEKPFFESVARALR- 197 (308)
T ss_pred ---------------------------------------hccCCCCCEEEEcCCCCC--CchhhhhHHHHHHHHHHhcC-
Confidence 001346999987442211 11111 2568999999999
Q ss_pred CCcEEEEe
Q 045407 269 KGGIFVMD 276 (382)
Q Consensus 269 pGGiFVfD 276 (382)
|||+|+.-
T Consensus 198 pgGvlv~q 205 (308)
T PLN02366 198 PGGVVCTQ 205 (308)
T ss_pred CCcEEEEC
Confidence 99999873
No 119
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=9e-09 Score=105.56 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=84.3
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||..|+.+++.- ...+|+++|+|+.||+.++++... + +...|.++++|++.++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r-~---g~~~v~~~~~Da~~l~~------------ 302 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR-L---KLSSIEIKIADAERLTE------------ 302 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH-c---CCCeEEEEECchhhhhh------------
Confidence 479999999999999988763 346899999999999999998532 2 22358899999876541
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE--ccchhcccCChhHH----------------
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA--FNYSCCCLHKRADL---------------- 255 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a--fn~S~~yL~~r~dL---------------- 255 (382)
+....||+|++ -|.+++++....++
T Consensus 303 -------------------------------------~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q 345 (431)
T PRK14903 303 -------------------------------------YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQ 345 (431)
T ss_pred -------------------------------------hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHH
Confidence 01346999986 56677777655443
Q ss_pred HHHHHHHHhhccCCCcEEEEecc
Q 045407 256 VLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
...+.++++.|+ |||++|+-.-
T Consensus 346 ~~iL~~a~~~Lk-pGG~LvYsTC 367 (431)
T PRK14903 346 LRIVSQAWKLLE-KGGILLYSTC 367 (431)
T ss_pred HHHHHHHHHhcC-CCCEEEEEEC
Confidence 556999999999 9999998654
No 120
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.90 E-value=8e-09 Score=111.73 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=80.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.+|+.+++.|.. .|++||+|+.||++|++|... .+- ...++.++++|+.++.. .
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~-~V~~vD~s~~al~~a~~N~~~-ng~-~~~~v~~i~~D~~~~l~--~---------- 604 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK-STTTVDMSNTYLEWAERNFAL-NGL-SGRQHRLIQADCLAWLK--E---------- 604 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC-EEEEEeCCHHHHHHHHHHHHH-hCC-CccceEEEEccHHHHHH--H----------
Confidence 46999999999999999998753 799999999999999998632 111 11379999999966431 0
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc-------cCChhHHHHHHHHHHhhcc
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC-------LHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y-------L~~r~dL~~yFr~V~~~L~ 267 (382)
+ ..+||+|++=-=++.- +.-..+....++.+.+.|+
T Consensus 605 ---~----------------------------------~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~ 647 (702)
T PRK11783 605 ---A----------------------------------REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR 647 (702)
T ss_pred ---c----------------------------------CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC
Confidence 0 2468988873211111 0112356678888999999
Q ss_pred CCCcEEEEeccC
Q 045407 268 KKGGIFVMDLYG 279 (382)
Q Consensus 268 ~pGGiFVfDl~g 279 (382)
|||++++....
T Consensus 648 -~gG~l~~~~~~ 658 (702)
T PRK11783 648 -PGGTLYFSNNK 658 (702)
T ss_pred -CCCEEEEEeCC
Confidence 99999997653
No 121
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.88 E-value=2.9e-08 Score=99.29 Aligned_cols=187 Identities=18% Similarity=0.218 Sum_probs=122.0
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCC--CcceEEEeccCCCchhhhhcccchhhhh
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADG--YSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~--~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+++||||-|-=...|-+.|-. ..||+||....++-|+++..+-..... .-.+.|+.+|-..-. |.
T Consensus 120 ~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~-----------l~ 187 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER-----------LM 187 (389)
T ss_pred ccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH-----------HH
Confidence 4789999999999999999985 899999999999999999765211110 012678888853322 11
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
..+. +..++||||-|-+.-+-.|.+.+.+...+++|+..|+ |||+|
T Consensus 188 d~~e---------------------------------~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk-pGG~F 233 (389)
T KOG1975|consen 188 DLLE---------------------------------FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK-PGGVF 233 (389)
T ss_pred Hhcc---------------------------------CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC-CCcEE
Confidence 1111 1245699998877666668899999999999999999 99999
Q ss_pred EEeccCCCchhhhhHhh--hccCCeEEE-----EeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHH
Q 045407 274 VMDLYGGTSSEQKLRLQ--RRFANFTYV-----WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDC 346 (382)
Q Consensus 274 VfDl~gg~s~e~kl~~~--R~~~~~tyv-----Weq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~ 346 (382)
|.=+-...-...+++.. +++.+=.|+ -.+..+| .--.-+..+|++.+-- . .-+ -+-..|-++.+
T Consensus 234 IgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~--~p~fG~kY~F~LedaV---d-cPE---ylV~F~~l~~l 304 (389)
T KOG1975|consen 234 IGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFD--VPPFGAKYRFHLEDAV---D-CPE---YLVPFPTLVSL 304 (389)
T ss_pred EEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccC--CCCccceEEEEccccc---C-Ccc---eeeehHHHHHH
Confidence 99664333333444332 234442221 1222333 0111234445443221 1 122 45677889999
Q ss_pred HHHcCCcEEEE
Q 045407 347 LEEAGFRSVHF 357 (382)
Q Consensus 347 LeeAGF~~V~v 357 (382)
+++-|.+.|.+
T Consensus 305 ae~y~LeLv~~ 315 (389)
T KOG1975|consen 305 AEEYGLELVFV 315 (389)
T ss_pred HHhcCcEEEEe
Confidence 99999999876
No 122
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.88 E-value=5.9e-09 Score=102.70 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=75.9
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+.+++.+|.. ...+|||+|||||.|++.-++.|.. +|+|+|+||.+++.|++|.... + -..++.+. ...+
T Consensus 150 lcl~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N-~--~~~~~~v~--~~~~- 220 (295)
T PF06325_consen 150 LCLELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELN-G--VEDRIEVS--LSED- 220 (295)
T ss_dssp HHHHHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHT-T---TTCEEES--CTSC-
T ss_pred HHHHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHc-C--CCeeEEEE--Eecc-
Confidence 45555555542 2348999999999999999999985 8999999999999999986331 1 01133321 1000
Q ss_pred hhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHH
Q 045407 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYF 259 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yF 259 (382)
....+||+|+|-.. ..-|+...
T Consensus 221 ---------------------------------------------------~~~~~~dlvvANI~-------~~vL~~l~ 242 (295)
T PF06325_consen 221 ---------------------------------------------------LVEGKFDLVVANIL-------ADVLLELA 242 (295)
T ss_dssp ---------------------------------------------------TCCS-EEEEEEES--------HHHHHHHH
T ss_pred ---------------------------------------------------cccccCCEEEECCC-------HHHHHHHH
Confidence 11377999998542 25778888
Q ss_pred HHHHhhccCCCcEEEE
Q 045407 260 KHVLHALSKKGGIFVM 275 (382)
Q Consensus 260 r~V~~~L~~pGGiFVf 275 (382)
..+.++|+ |||.||+
T Consensus 243 ~~~~~~l~-~~G~lIl 257 (295)
T PF06325_consen 243 PDIASLLK-PGGYLIL 257 (295)
T ss_dssp HHCHHHEE-EEEEEEE
T ss_pred HHHHHhhC-CCCEEEE
Confidence 88999999 9999999
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.85 E-value=2.3e-08 Score=99.55 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=48.4
Q ss_pred CcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.+|||+|||||.++..+++... ...|+|||+|++|++.|+++... . +..++.++++|..+.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~-~---g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-L---GIENVIFVCGDGYYG 143 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-c---CCCcEEEEeCChhhc
Confidence 4799999999999999998754 24699999999999999987422 2 234688999986543
No 124
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.84 E-value=3e-09 Score=99.33 Aligned_cols=146 Identities=17% Similarity=0.337 Sum_probs=94.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||||||.|.|...|.+. .+.++.||++|++.+.-|.++- ++.+|+|+-+-.
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rG-----------v~Viq~Dld~gL-------------- 68 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARG-----------VSVIQGDLDEGL-------------- 68 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcC-----------CCEEECCHHHhH--------------
Confidence 36999999999998776663 4568999999999999999883 678999974422
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
++|+...||.|+..- ++-.+..++.+ ++++.+. |.-.|
T Consensus 69 ----------------------------------~~f~d~sFD~VIlsq-tLQ~~~~P~~v---L~EmlRV----gr~~I 106 (193)
T PF07021_consen 69 ----------------------------------ADFPDQSFDYVILSQ-TLQAVRRPDEV---LEEMLRV----GRRAI 106 (193)
T ss_pred ----------------------------------hhCCCCCccEEehHh-HHHhHhHHHHH---HHHHHHh----cCeEE
Confidence 346678999998764 66666655544 4444333 32223
Q ss_pred EeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeE------EecCHHHHHHHHH
Q 045407 275 MDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNW------RLWSLPEIKDCLE 348 (382)
Q Consensus 275 fDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~------Rlysl~EI~d~Le 348 (382)
+ .||||.|| .. |.+|-| .|..-..+...|.| |+.|+.+++++.+
T Consensus 107 V----------------sFPNFg~W-~~----------R~~l~~---~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 107 V----------------SFPNFGHW-RN----------RLQLLL---RGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred E----------------EecChHHH-HH----------HHHHHh---cCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 2 12454432 21 111100 11101112233333 8999999999999
Q ss_pred HcCCcEEEEE
Q 045407 349 EAGFRSVHFW 358 (382)
Q Consensus 349 eAGF~~V~v~ 358 (382)
+.|+++++-+
T Consensus 157 ~~~i~I~~~~ 166 (193)
T PF07021_consen 157 ELGIRIEERV 166 (193)
T ss_pred HCCCEEEEEE
Confidence 9999998754
No 125
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.84 E-value=3.2e-08 Score=92.11 Aligned_cols=119 Identities=23% Similarity=0.290 Sum_probs=91.0
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
.|-||.-+.---+. -+.-.+|+|.|||||.++++|++.++..+|+++|-++++++.-+.|. ++++ ..++.++.
T Consensus 18 TK~EIRal~ls~L~---~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~-~~fg---~~n~~vv~ 90 (187)
T COG2242 18 TKEEIRALTLSKLR---PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNA-ARFG---VDNLEVVE 90 (187)
T ss_pred cHHHHHHHHHHhhC---CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHH-HHhC---CCcEEEEe
Confidence 45566443332222 22234799999999999999999999999999999999999998875 4444 46899999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
|+.-+... .++.||+|+.=-- .
T Consensus 91 g~Ap~~L~--------------------------------------------------~~~~~daiFIGGg--------~ 112 (187)
T COG2242 91 GDAPEALP--------------------------------------------------DLPSPDAIFIGGG--------G 112 (187)
T ss_pred ccchHhhc--------------------------------------------------CCCCCCEEEECCC--------C
Confidence 99744430 1457999987652 3
Q ss_pred HHHHHHHHHHhhccCCCcEEEEecc
Q 045407 254 DLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
.+...|..+...|+ |||.+|+...
T Consensus 113 ~i~~ile~~~~~l~-~ggrlV~nai 136 (187)
T COG2242 113 NIEEILEAAWERLK-PGGRLVANAI 136 (187)
T ss_pred CHHHHHHHHHHHcC-cCCeEEEEee
Confidence 56788999999999 9999999875
No 126
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=2.1e-08 Score=102.84 Aligned_cols=108 Identities=16% Similarity=0.053 Sum_probs=78.8
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||||..|..+++.. ...+|+|+|+|+.||+.++++... + +..+|.++++|+..+.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~-~---g~~~v~~~~~Da~~~~------------- 314 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA-L---GITIIETIEGDARSFS------------- 314 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-h---CCCeEEEEeCcccccc-------------
Confidence 579999999999988887642 235899999999999999988532 2 2346899999987654
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE--ccchhcc---------cCChhHH-------
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA--FNYSCCC---------LHKRADL------- 255 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a--fn~S~~y---------L~~r~dL------- 255 (382)
. ...||+|++ -|.+.+. ..+++++
T Consensus 315 ----~----------------------------------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q 356 (445)
T PRK14904 315 ----P----------------------------------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQ 356 (445)
T ss_pred ----c----------------------------------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHH
Confidence 0 245899884 2333332 2333443
Q ss_pred HHHHHHHHhhccCCCcEEEEecc
Q 045407 256 VLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
...++++++.|+ |||++|+-.-
T Consensus 357 ~~iL~~a~~~lk-pgG~lvystc 378 (445)
T PRK14904 357 AELLDHAASLLK-PGGVLVYATC 378 (445)
T ss_pred HHHHHHHHHhcC-CCcEEEEEeC
Confidence 358999999999 9999999654
No 127
>PRK01581 speE spermidine synthase; Validated
Probab=98.82 E-value=1.7e-08 Score=102.48 Aligned_cols=142 Identities=16% Similarity=0.056 Sum_probs=91.5
Q ss_pred HHHHhhcCChhhH-HHHHHHHHHh-hCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh-cccccc
Q 045407 86 LYQQSVQSPKGDI-SYLQKFFLIY-VGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN-NLNKVG 162 (382)
Q Consensus 86 LYd~~vq~p~~Di-~yl~~~f~~y-~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~-~~~kl~ 162 (382)
+.|-.+|....|- -|-+-+...- .....|.+||++|||+|..+.++++...-.+|++||||++|+++|++. ....+.
T Consensus 121 ~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~ 200 (374)
T PRK01581 121 YLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLN 200 (374)
T ss_pred EECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhc
Confidence 3444555555443 4433333210 124558899999999999999999876556899999999999999972 111111
Q ss_pred --CCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 163 --ADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 163 --~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
+-...|+.++.+|.++... . ....||+|+
T Consensus 201 ~~~~~DpRV~vvi~Da~~fL~----------------~---------------------------------~~~~YDVII 231 (374)
T PRK01581 201 KSAFFDNRVNVHVCDAKEFLS----------------S---------------------------------PSSLYDVII 231 (374)
T ss_pred cccCCCCceEEEECcHHHHHH----------------h---------------------------------cCCCccEEE
Confidence 1123599999999876541 0 035699998
Q ss_pred Eccch-hcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 241 AFNYS-CCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 241 afn~S-~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+=..- .......---..+|+.++++|+ |||+||+-.
T Consensus 232 vDl~DP~~~~~~~LyT~EFy~~~~~~Lk-PgGV~V~Qs 268 (374)
T PRK01581 232 IDFPDPATELLSTLYTSELFARIATFLT-EDGAFVCQS 268 (374)
T ss_pred EcCCCccccchhhhhHHHHHHHHHHhcC-CCcEEEEec
Confidence 75311 1100011112568999999999 999999853
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.82 E-value=3.2e-08 Score=100.86 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=80.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||+|..|+.+++.....+|+|+|+|+.||+.++++.. +.+-. .++.+.++|...+..
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~-r~g~~--~~v~~~~~d~~~~~~------------- 303 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLK-RLGLT--IKAETKDGDGRGPSQ------------- 303 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH-HcCCC--eEEEEeccccccccc-------------
Confidence 57999999999999999987655789999999999999988753 22221 245557777654430
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE--ccchhcccCChhH----------------HH
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA--FNYSCCCLHKRAD----------------LV 256 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a--fn~S~~yL~~r~d----------------L~ 256 (382)
. ....+||.|++ -|.+.+.+....+ ..
T Consensus 304 ---~--------------------------------~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~ 348 (426)
T TIGR00563 304 ---W--------------------------------AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQS 348 (426)
T ss_pred ---c--------------------------------ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHH
Confidence 0 01356999985 3556665544333 26
Q ss_pred HHHHHHHhhccCCCcEEEEec
Q 045407 257 LYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVfDl 277 (382)
..++++++.|+ |||++|.-.
T Consensus 349 ~lL~~a~~~Lk-pgG~lvyst 368 (426)
T TIGR00563 349 EILDAIWPLLK-TGGTLVYAT 368 (426)
T ss_pred HHHHHHHHhcC-CCcEEEEEe
Confidence 78999999999 999999853
No 129
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.81 E-value=2.8e-08 Score=93.57 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=114.5
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHH----HHHHHhccccccCCCCcceEEEecc
Q 045407 100 YLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEAL----EWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 100 yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL----~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
-|.+.++.++.... .+|||+|||||.|++.+|+.-|..+=.--|+++..+ +|..+..... .+-. +.-|
T Consensus 13 pIl~vL~~~l~~~~-~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N------v~~P-~~lD 84 (204)
T PF06080_consen 13 PILEVLKQYLPDSG-TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN------VRPP-LALD 84 (204)
T ss_pred HHHHHHHHHhCccC-ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc------cCCC-eEee
Confidence 34444444442211 159999999999999999999988888999999886 3333332111 1111 2446
Q ss_pred CCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH
Q 045407 176 VLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL 255 (382)
Q Consensus 176 V~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL 255 (382)
|.++.|.-. . .+.+....||+|+|.|. .++...+..
T Consensus 85 v~~~~w~~~-------------~-----------------------------~~~~~~~~~D~i~~~N~--lHI~p~~~~ 120 (204)
T PF06080_consen 85 VSAPPWPWE-------------L-----------------------------PAPLSPESFDAIFCINM--LHISPWSAV 120 (204)
T ss_pred cCCCCCccc-------------c-----------------------------ccccCCCCcceeeehhH--HHhcCHHHH
Confidence 666654210 0 00112467999999994 477899999
Q ss_pred HHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEE-EeecccccccceEEEEEEEEeecccceeeeeeeee
Q 045407 256 VLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYV-WEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYN 334 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyv-Weq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~ 334 (382)
...|+.+.++|+ +||+|++ ||.... .+ .+. =.+..||. .|+..- -.
T Consensus 121 ~~lf~~a~~~L~-~gG~L~~--YGPF~~----------~G-~~ts~SN~~FD~------------------sLr~rd-p~ 167 (204)
T PF06080_consen 121 EGLFAGAARLLK-PGGLLFL--YGPFNR----------DG-KFTSESNAAFDA------------------SLRSRD-PE 167 (204)
T ss_pred HHHHHHHHHhCC-CCCEEEE--eCCccc----------CC-EeCCcHHHHHHH------------------HHhcCC-CC
Confidence 999999999999 9999986 543222 11 111 12233442 111111 12
Q ss_pred EEecCHHHHHHHHHHcCCcEEEEEeccCch
Q 045407 335 WRLWSLPEIKDCLEEAGFRSVHFWLREMPD 364 (382)
Q Consensus 335 ~Rlysl~EI~d~LeeAGF~~V~v~~r~~~~ 364 (382)
|=+-.+++|..+..++|++.+.+. +||-
T Consensus 168 ~GiRD~e~v~~lA~~~GL~l~~~~--~MPA 195 (204)
T PF06080_consen 168 WGIRDIEDVEALAAAHGLELEEDI--DMPA 195 (204)
T ss_pred cCccCHHHHHHHHHHCCCccCccc--ccCC
Confidence 567789999999999999998875 7774
No 130
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.81 E-value=2.4e-08 Score=94.13 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc--cccC------CCCcceE
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN--KVGA------DGYSRIS 170 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~--kl~~------d~~~RI~ 170 (382)
..|++++.. ..+..+.+||..|||.|.-...||++|+ +|+|||||+.+++.|.+.+.. .+.. ....+|.
T Consensus 24 p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 24 PALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp HHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred HHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 456666655 3444456899999999999999999995 799999999999999554322 1111 1234789
Q ss_pred EEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC
Q 045407 171 LFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH 250 (382)
Q Consensus 171 l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~ 250 (382)
+++||+.+++.. ..++||+|.=-. ++|=|
T Consensus 101 ~~~gDfF~l~~~-------------------------------------------------~~g~fD~iyDr~-~l~Al- 129 (218)
T PF05724_consen 101 IYCGDFFELPPE-------------------------------------------------DVGKFDLIYDRT-FLCAL- 129 (218)
T ss_dssp EEES-TTTGGGS-------------------------------------------------CHHSEEEEEECS-STTTS-
T ss_pred EEEcccccCChh-------------------------------------------------hcCCceEEEEec-ccccC-
Confidence 999999876610 035799997653 44444
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
.++.=.+|.+++.+.|+ |||.+++
T Consensus 130 pp~~R~~Ya~~l~~ll~-p~g~~lL 153 (218)
T PF05724_consen 130 PPEMRERYAQQLASLLK-PGGRGLL 153 (218)
T ss_dssp -GGGHHHHHHHHHHCEE-EEEEEEE
T ss_pred CHHHHHHHHHHHHHHhC-CCCcEEE
Confidence 46777899999999999 9999544
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=3.9e-08 Score=100.64 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=50.3
Q ss_pred CcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||+|..+..+++.. ...+|+|+|+|+.+++.++++. .+. +...|.++++|++++.
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~-~~~---g~~~v~~~~~D~~~~~ 314 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENA-KRL---GLTNIETKALDARKVH 314 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHc---CCCeEEEEeCCccccc
Confidence 579999999999999999863 4568999999999999999874 222 2235899999987654
No 132
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.79 E-value=3.7e-08 Score=100.45 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=75.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||+|||||.+++..+..|. .+|++||+|+.||++|++|... .+- ...++.++++|+.+...
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga-~~V~~VD~s~~al~~a~~N~~~-Ngl-~~~~v~~i~~D~~~~l~------------- 285 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVEL-NKL-DLSKAEFVRDDVFKLLR------------- 285 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHH-cCC-CCCcEEEEEccHHHHHH-------------
Confidence 4699999999999998777664 4899999999999999998532 111 11378999999976531
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh-------hHHHHHHHHHHhhcc
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR-------ADLVLYFKHVLHALS 267 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r-------~dL~~yFr~V~~~L~ 267 (382)
++.. ...+||+|++== =.+..+. .....+++.+.+.|+
T Consensus 286 ~~~~---------------------------------~~~~fDlVilDP--P~f~~~k~~l~~~~~~y~~l~~~a~~lLk 330 (396)
T PRK15128 286 TYRD---------------------------------RGEKFDVIVMDP--PKFVENKSQLMGACRGYKDINMLAIQLLN 330 (396)
T ss_pred HHHh---------------------------------cCCCCCEEEECC--CCCCCChHHHHHHHHHHHHHHHHHHHHcC
Confidence 0000 024689998532 1122222 234556677899999
Q ss_pred CCCcEEEEe
Q 045407 268 KKGGIFVMD 276 (382)
Q Consensus 268 ~pGGiFVfD 276 (382)
|||+||.=
T Consensus 331 -~gG~lv~~ 338 (396)
T PRK15128 331 -PGGILLTF 338 (396)
T ss_pred -CCeEEEEE
Confidence 99999973
No 133
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.79 E-value=2.8e-08 Score=96.07 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=54.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
...|||+|||+|.++..++++-....++||+++++|.+.|+++-.. ..-..||+++++|+.++.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l---n~l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL---NPLEERIQVIEADIKEFL 108 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh---CcchhceeEehhhHHHhh
Confidence 5679999999999999999996668999999999999999997432 112359999999998876
No 134
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.78 E-value=1.2e-07 Score=93.11 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=50.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++... .+-.++.++++|+.++.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~----~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAE----LGLTNVQFQALDSTQFA 234 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHH----cCCCceEEEEcCHHHHH
Confidence 4679999999999999999987 4799999999999999988532 12247999999986544
No 135
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.78 E-value=4.6e-08 Score=91.29 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=77.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+|+|+|+|+|.++..++++-|..+++.+|| |++++.|++ ..||.++.||+.++.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f~~~------------- 156 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFFDPL------------- 156 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TTTCC-------------
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHHhhh-------------
Confidence 45799999999999999999999999999999 999998888 149999999997332
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC--c
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG--G 271 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG--G 271 (382)
|.+|+|+.-+-..+ .+.++.+..|++|+++|+ || |
T Consensus 157 ----------------------------------------P~~D~~~l~~vLh~--~~d~~~~~iL~~~~~al~-pg~~g 193 (241)
T PF00891_consen 157 ----------------------------------------PVADVYLLRHVLHD--WSDEDCVKILRNAAAALK-PGKDG 193 (241)
T ss_dssp ----------------------------------------SSESEEEEESSGGG--S-HHHHHHHHHHHHHHSE-ECTTE
T ss_pred ----------------------------------------ccccceeeehhhhh--cchHHHHHHHHHHHHHhC-CCCCC
Confidence 44899988764433 467899999999999999 76 5
Q ss_pred E-EEEecc
Q 045407 272 I-FVMDLY 278 (382)
Q Consensus 272 i-FVfDl~ 278 (382)
. +|+|..
T Consensus 194 ~llI~e~~ 201 (241)
T PF00891_consen 194 RLLIIEMV 201 (241)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeec
Confidence 5 455765
No 136
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.77 E-value=3.4e-08 Score=95.71 Aligned_cols=176 Identities=16% Similarity=0.091 Sum_probs=94.8
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccccc
Q 045407 83 KFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVG 162 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~ 162 (382)
++.+|.=+ .-.++++=..+.+.. .--.|..+||+||-.|.||+.+|+....+.|+|||||+-.+.-|+++..--..
T Consensus 32 f~~YY~~r--~~~~~~D~rLk~L~~--~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~ 107 (288)
T KOG2899|consen 32 FDNYYGFR--LNPGDSDPRLKVLEK--DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCD 107 (288)
T ss_pred ccchhhcc--cCCCCCChhhhhccc--cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccccc
Confidence 34455544 334444333333322 12225678999999999999999987778999999999999999998643111
Q ss_pred CCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc
Q 045407 163 ADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF 242 (382)
Q Consensus 163 ~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af 242 (382)
.....+-.+.+++--+.- .-+++.-.+... ++.-..-....++.-+.+.++-. .+..+.||||+|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~------~is~~~~a~~a~-----t~~~p~n~~f~~~n~vle~~dfl---~~~~~~fDiIlcL 173 (288)
T KOG2899|consen 108 HETEVSGKFPASFGVQFG------PISQRNEADRAF-----TTDFPDNVWFQKENYVLESDDFL---DMIQPEFDIILCL 173 (288)
T ss_pred ccccccCCCccccccccc------cccccccccccc-----cccCCcchhcccccEEEecchhh---hhccccccEEEEE
Confidence 000000000111000000 000000000000 00000000111111122222111 3457889999999
Q ss_pred cchhcccC--ChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 243 NYSCCCLH--KRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 243 n~S~~yL~--~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
.-+.|-=. -.+-|...|+++++.|. |||+||+.=
T Consensus 174 SiTkWIHLNwgD~GL~~ff~kis~ll~-pgGiLvvEP 209 (288)
T KOG2899|consen 174 SITKWIHLNWGDDGLRRFFRKISSLLH-PGGILVVEP 209 (288)
T ss_pred EeeeeEecccccHHHHHHHHHHHHhhC-cCcEEEEcC
Confidence 86654211 35789999999999999 999999953
No 137
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.77 E-value=3.5e-08 Score=94.64 Aligned_cols=91 Identities=9% Similarity=-0.064 Sum_probs=60.2
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccc
Q 045407 83 KFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKV 161 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl 161 (382)
....|..-.-.++...+.+.-..+. -....+|||+|||+|..|+.+++.- ....|+++|+|+.||+.++++... .
T Consensus 44 ~~~~~~~G~~~~qd~~s~~~~~~l~---~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~-~ 119 (264)
T TIGR00446 44 STPEYLSGLYYIQEASSMIPPLALE---PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR-C 119 (264)
T ss_pred cChhHhCCeEEEECHHHHHHHHHhC---CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-c
Confidence 3445554333334444544433332 1223469999999999999988753 235799999999999999987532 2
Q ss_pred cCCCCcceEEEeccCCCch
Q 045407 162 GADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 162 ~~d~~~RI~l~~gDV~~~~ 180 (382)
+...|.++++|++.+.
T Consensus 120 ---g~~~v~~~~~D~~~~~ 135 (264)
T TIGR00446 120 ---GVLNVAVTNFDGRVFG 135 (264)
T ss_pred ---CCCcEEEecCCHHHhh
Confidence 2246889999976544
No 138
>PRK03612 spermidine synthase; Provisional
Probab=98.75 E-value=3.6e-08 Score=103.43 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=80.4
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc-cccccC--CCCcceEEEeccCCCchhhhhcccc
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN-LNKVGA--DGYSRISLFHGNVLQPLEAKLVRYE 188 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~-~~kl~~--d~~~RI~l~~gDV~~~~~~~~~~~~ 188 (382)
+.|.+||++|||+|.++.++++.....+|++||+|++|++.|+++. ...+.. -...|++++++|.++...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~------- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR------- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH-------
Confidence 3478899999999999999998754358999999999999999841 111111 123589999999876441
Q ss_pred hhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH--HHHHHHHHhhc
Q 045407 189 PQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL--VLYFKHVLHAL 266 (382)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L 266 (382)
. ...+||+|++-... ..-.....+ ...|+.++++|
T Consensus 369 ---------~---------------------------------~~~~fDvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L 405 (521)
T PRK03612 369 ---------K---------------------------------LAEKFDVIIVDLPD-PSNPALGKLYSVEFYRLLKRRL 405 (521)
T ss_pred ---------h---------------------------------CCCCCCEEEEeCCC-CCCcchhccchHHHHHHHHHhc
Confidence 0 03579999885321 110000111 45889999999
Q ss_pred cCCCcEEEEec
Q 045407 267 SKKGGIFVMDL 277 (382)
Q Consensus 267 ~~pGGiFVfDl 277 (382)
+ |||+|++-.
T Consensus 406 ~-pgG~lv~~~ 415 (521)
T PRK03612 406 A-PDGLLVVQS 415 (521)
T ss_pred C-CCeEEEEec
Confidence 9 999999954
No 139
>PLN02476 O-methyltransferase
Probab=98.71 E-value=8.1e-08 Score=94.12 Aligned_cols=110 Identities=18% Similarity=0.137 Sum_probs=82.2
Q ss_pred CCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..|.+|||+|||||--|+.+|+. +....|+.+|.++++++.|+++. ++.+- ..+|.++.||.++...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl--~~~I~li~GdA~e~L~--------- 184 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGV--SHKVNVKHGLAAESLK--------- 184 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCC--CCcEEEEEcCHHHHHH---------
Confidence 34778999999999999998874 22457999999999999999975 32222 2489999999866431
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
.+.. +-..++||+|+.=-. ......||..+.+.|+ ||
T Consensus 185 ----~l~~-------------------------------~~~~~~FD~VFIDa~-------K~~Y~~y~e~~l~lL~-~G 221 (278)
T PLN02476 185 ----SMIQ-------------------------------NGEGSSYDFAFVDAD-------KRMYQDYFELLLQLVR-VG 221 (278)
T ss_pred ----HHHh-------------------------------cccCCCCCEEEECCC-------HHHHHHHHHHHHHhcC-CC
Confidence 0000 001357999887654 3567899999999999 99
Q ss_pred cEEEEe
Q 045407 271 GIFVMD 276 (382)
Q Consensus 271 GiFVfD 276 (382)
|++|+|
T Consensus 222 GvIV~D 227 (278)
T PLN02476 222 GVIVMD 227 (278)
T ss_pred cEEEEe
Confidence 999998
No 140
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=6.1e-08 Score=99.14 Aligned_cols=111 Identities=15% Similarity=0.090 Sum_probs=79.4
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
.+|||+|||+|..|..+++. +...+|+|+|+++.||+.++++.. ++ +...|.++++|++++...
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~-r~---g~~~v~~~~~D~~~~~~~----------- 318 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQ-RL---GLKSIKILAADSRNLLEL----------- 318 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHH-Hc---CCCeEEEEeCChhhcccc-----------
Confidence 57999999999999999987 334589999999999999998753 22 234689999998765410
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEc--cchhcccCC---------hhH-------H
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAF--NYSCCCLHK---------RAD-------L 255 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~af--n~S~~yL~~---------r~d-------L 255 (382)
. .+....||.|++- |.+.+-+.. +++ .
T Consensus 319 ----~-------------------------------~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q 363 (434)
T PRK14901 319 ----K-------------------------------PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQ 363 (434)
T ss_pred ----c-------------------------------ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHH
Confidence 0 0002468988852 333343332 223 3
Q ss_pred HHHHHHHHhhccCCCcEEEEe
Q 045407 256 VLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 256 ~~yFr~V~~~L~~pGGiFVfD 276 (382)
...++++++.|+ |||++|.-
T Consensus 364 ~~iL~~a~~~lk-pgG~lvys 383 (434)
T PRK14901 364 AELLESLAPLLK-PGGTLVYA 383 (434)
T ss_pred HHHHHHHHHhcC-CCCEEEEE
Confidence 677999999998 99999973
No 141
>PHA03412 putative methyltransferase; Provisional
Probab=98.69 E-value=1e-07 Score=91.89 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=47.2
Q ss_pred CcccccCCCccHhHHHHHHhC---CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSD---SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g---~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++..++++. ....|+|||||+.|+++|+++. .++.++++|+++..
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~ 110 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE 110 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc
Confidence 469999999999999998862 2358999999999999999873 24789999987544
No 142
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.66 E-value=5.5e-07 Score=92.36 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=49.9
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
..+|||+|||||.++..+++.+ .+|+|+|+|++||++|++|... .+..++.++++|+.+.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~----~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARR----NGLDNVTFYHANLEED 357 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHH----cCCCceEEEEeChHHh
Confidence 3579999999999999999998 4799999999999999987532 1223699999998643
No 143
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.65 E-value=6.8e-07 Score=87.43 Aligned_cols=187 Identities=17% Similarity=0.207 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhC----CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcce-EEEe
Q 045407 99 SYLQKFFLIYVG----GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRI-SLFH 173 (382)
Q Consensus 99 ~yl~~~f~~y~g----gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI-~l~~ 173 (382)
++|...+..+.. .+.+.+||=.|||.|||+-++|++|+ .|.|.++|--||=. ..-.++.......-.| .|++
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~-s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLA-SNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHH-HHHHHcccCCCCcEEEeccee
Confidence 566666666543 34457899999999999999999996 69999999999743 2222121111111122 2333
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCc--CccCC--------CCCCccEEEEcc
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNC--SKQKS--------SLPARDIICAFN 243 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~fDiV~afn 243 (382)
. -.... ..++.++-+++.+ +...+......+. +..+| ....+|+||..+
T Consensus 115 ~-~sn~~-------~~~dqlr~v~iPD-------------v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F 173 (270)
T PF07942_consen 115 S-FSNQK-------SREDQLRPVRIPD-------------VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF 173 (270)
T ss_pred c-ccCCC-------CHHHhCCceEeCC-------------cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE
Confidence 2 11111 1122333333310 0000000111111 12222 135799988763
Q ss_pred chhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecc
Q 045407 244 YSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKE 323 (382)
Q Consensus 244 ~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~ 323 (382)
.+.+-..+..|++.+++.|+ |||+.|. . +...|.|+... . .++
T Consensus 174 ----FIDTA~Ni~~Yi~tI~~lLk-pgG~WIN--~---------------GPLlyh~~~~~-~--------------~~~ 216 (270)
T PF07942_consen 174 ----FIDTAENIIEYIETIEHLLK-PGGYWIN--F---------------GPLLYHFEPMS-I--------------PNE 216 (270)
T ss_pred ----EeechHHHHHHHHHHHHHhc-cCCEEEe--c---------------CCccccCCCCC-C--------------CCC
Confidence 67787889999999999999 9998875 1 23345555210 0 011
Q ss_pred cceeeeeeeeeEEecCHHHHHHHHHHcCCcEEE
Q 045407 324 QKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVH 356 (382)
Q Consensus 324 ~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~ 356 (382)
. .+ =.|.+||+.+++..||+.+.
T Consensus 217 ~-sv---------eLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 217 M-SV---------ELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred c-cc---------CCCHHHHHHHHHHCCCEEEE
Confidence 1 11 24789999999999998875
No 144
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.62 E-value=9e-08 Score=89.65 Aligned_cols=119 Identities=21% Similarity=0.248 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.+|..+.++ ..|.+|||+||++|--++.||+.-+ ..+|+.||+++++.++|+++. .+.+- ..+|.++.||..
T Consensus 35 ~lL~~l~~~----~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~-~~ag~--~~~I~~~~gda~ 107 (205)
T PF01596_consen 35 QLLQMLVRL----TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENF-RKAGL--DDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHH----HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHH-HHTTG--GGGEEEEES-HH
T ss_pred HHHHHHHHh----cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHH-HhcCC--CCcEEEEEeccH
Confidence 566555544 2377999999999999999997533 468999999999999999864 32221 258999999976
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
+... ++.- +-..++||+|+.=.+= ..-..
T Consensus 108 ~~l~-------------~l~~-------------------------------~~~~~~fD~VFiDa~K-------~~y~~ 136 (205)
T PF01596_consen 108 EVLP-------------ELAN-------------------------------DGEEGQFDFVFIDADK-------RNYLE 136 (205)
T ss_dssp HHHH-------------HHHH-------------------------------TTTTTSEEEEEEESTG-------GGHHH
T ss_pred hhHH-------------HHHh-------------------------------ccCCCceeEEEEcccc-------cchhh
Confidence 5431 0100 0013579999876543 45578
Q ss_pred HHHHHHhhccCCCcEEEEe
Q 045407 258 YFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVfD 276 (382)
||..+...|+ |||++|+|
T Consensus 137 y~~~~~~ll~-~ggvii~D 154 (205)
T PF01596_consen 137 YFEKALPLLR-PGGVIIAD 154 (205)
T ss_dssp HHHHHHHHEE-EEEEEEEE
T ss_pred HHHHHhhhcc-CCeEEEEc
Confidence 9999999999 99999998
No 145
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.58 E-value=2.2e-07 Score=88.78 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 97 DISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 97 Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
|-..+.++... ++-....+|||+|||+|.++..+++++. +|+|||+|+.|++.++++... ..++.++++|+
T Consensus 14 d~~~~~~iv~~-~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~ 84 (258)
T PRK14896 14 DDRVVDRIVEY-AEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDA 84 (258)
T ss_pred CHHHHHHHHHh-cCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc------CCCEEEEEecc
Confidence 34445555543 3323345799999999999999999964 799999999999999987421 24799999999
Q ss_pred CCch
Q 045407 177 LQPL 180 (382)
Q Consensus 177 ~~~~ 180 (382)
++++
T Consensus 85 ~~~~ 88 (258)
T PRK14896 85 LKVD 88 (258)
T ss_pred ccCC
Confidence 8765
No 146
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.58 E-value=1.9e-07 Score=89.88 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=51.1
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
...+|||+|||||.++..+++++. +|+|+|+|++|++.++++.. . .++.++++|+.+.+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~----~---~~v~~i~~D~~~~~ 100 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA----E---DNLTIIEGDALKVD 100 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc----c---CceEEEEChhhcCC
Confidence 345799999999999999999986 69999999999999998641 1 47999999998776
No 147
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.58 E-value=2.1e-07 Score=91.56 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=77.9
Q ss_pred CCcccccCCCcc----HhHHHHHHhC----CCCeEEEEeCCHHHHHHHHHhcccc-----cc------------------
Q 045407 114 PLHLQEDFCGTA----LLSTEWLRSD----SRRTAVGLDLDLEALEWCMENNLNK-----VG------------------ 162 (382)
Q Consensus 114 p~~LLEl~CGTG----~LS~elar~g----~~~tVvGVDLS~emL~~A~e~~~~k-----l~------------------ 162 (382)
+.+|+-.||+|| .|++.|+..+ .+.+|+|.|||+.+|+.|++-.-.. +.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 578999999999 4777776642 1357999999999999998763220 00
Q ss_pred ----CCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccE
Q 045407 163 ----ADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDI 238 (382)
Q Consensus 163 ----~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDi 238 (382)
..-..+|.|-+.|+.++++ ...+.||+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~-------------------------------------------------~~~~~fD~ 226 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQW-------------------------------------------------AVPGPFDA 226 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCC-------------------------------------------------ccCCCcce
Confidence 0001223444444333221 01467999
Q ss_pred EEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 239 ICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 239 V~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
|+|-| ++.||.. +.-.+.++.++++|+ |||+|++-.
T Consensus 227 I~cRN-vliyF~~-~~~~~vl~~l~~~L~-pgG~L~lG~ 262 (287)
T PRK10611 227 IFCRN-VMIYFDK-TTQERILRRFVPLLK-PDGLLFAGH 262 (287)
T ss_pred eeHhh-HHhcCCH-HHHHHHHHHHHHHhC-CCcEEEEeC
Confidence 99998 7889855 678999999999999 999998854
No 148
>PRK04148 hypothetical protein; Provisional
Probab=98.55 E-value=8.1e-07 Score=78.83 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=69.5
Q ss_pred CCcccccCCCccH-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTAL-LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~-LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
..+++|+|||+|. ++..|++.|. +|+|+|+++.++++|+++. +..+++|+.+|+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~~-----------~~~v~dDlf~p~~----------- 72 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKLG-----------LNAFVDDLFNPNL----------- 72 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhC-----------CeEEECcCCCCCH-----------
Confidence 4679999999995 9999999995 7999999999999998873 5689999998871
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhcc
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALS 267 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~ 267 (382)
.+ ...+|+|-+.. -+.+|+..+..+++.+.
T Consensus 73 ----~~----------------------------------y~~a~liysir-------pp~el~~~~~~la~~~~ 102 (134)
T PRK04148 73 ----EI----------------------------------YKNAKLIYSIR-------PPRDLQPFILELAKKIN 102 (134)
T ss_pred ----HH----------------------------------HhcCCEEEEeC-------CCHHHHHHHHHHHHHcC
Confidence 12 46689886543 35799999999998875
No 149
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.3e-06 Score=86.51 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=89.8
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+|||+|||.|-|++.+++..|...++=+|+|.-+|+.|++|... .+.....+++.|+-++-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~----N~~~~~~v~~s~~~~~v--------------- 221 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA----NGVENTEVWASNLYEPV--------------- 221 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH----cCCCccEEEEecccccc---------------
Confidence 69999999999999999999999999999999999999998532 11122267888875544
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccC-Ch----hHHHHHHHHHHhhccCCC
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLH-KR----ADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~-~r----~dL~~yFr~V~~~L~~pG 270 (382)
.++||+|+|-= =|| -. .--.+.|+.+.++|+ +|
T Consensus 222 -------------------------------------~~kfd~IisNP----Pfh~G~~v~~~~~~~~i~~A~~~L~-~g 259 (300)
T COG2813 222 -------------------------------------EGKFDLIISNP----PFHAGKAVVHSLAQEIIAAAARHLK-PG 259 (300)
T ss_pred -------------------------------------cccccEEEeCC----CccCCcchhHHHHHHHHHHHHHhhc-cC
Confidence 24688887632 111 11 222478999999999 99
Q ss_pred cEEEEeccCCCchhhhhHhhhccCCeEEE
Q 045407 271 GIFVMDLYGGTSSEQKLRLQRRFANFTYV 299 (382)
Q Consensus 271 GiFVfDl~gg~s~e~kl~~~R~~~~~tyv 299 (382)
|-+.+=.++.-+++.+| .+.|.++..+
T Consensus 260 GeL~iVan~~l~y~~~L--~~~Fg~v~~l 286 (300)
T COG2813 260 GELWIVANRHLPYEKKL--KELFGNVEVL 286 (300)
T ss_pred CEEEEEEcCCCChHHHH--HHhcCCEEEE
Confidence 99998888777777655 4556555544
No 150
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.52 E-value=4.4e-07 Score=94.06 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=83.9
Q ss_pred chHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC----CCCeEEEEeCCHHHHHHHHHh-
Q 045407 82 SKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD----SRRTAVGLDLDLEALEWCMEN- 156 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g----~~~tVvGVDLS~emL~~A~e~- 156 (382)
-|+..|++++ ...|.+.....-.......|+++|||||.|+..-++.+ ...+|++|.-++.+....++.
T Consensus 161 vKY~~Ye~AI------~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v 234 (448)
T PF05185_consen 161 VKYDQYERAI------EEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRV 234 (448)
T ss_dssp HHHHHHHHHH------HHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHH
Confidence 4777777773 12333332220000024679999999999998877765 345899999999877655443
Q ss_pred ccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCc
Q 045407 157 NLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPAR 236 (382)
Q Consensus 157 ~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 236 (382)
+.... ..+|.++++||++.. + ..++
T Consensus 235 ~~n~w----~~~V~vi~~d~r~v~-----------------l----------------------------------pekv 259 (448)
T PF05185_consen 235 NANGW----GDKVTVIHGDMREVE-----------------L----------------------------------PEKV 259 (448)
T ss_dssp HHTTT----TTTEEEEES-TTTSC-----------------H----------------------------------SS-E
T ss_pred HhcCC----CCeEEEEeCcccCCC-----------------C----------------------------------CCce
Confidence 21111 258999999999987 3 4579
Q ss_pred cEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 237 DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 237 DiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
||||+=.- ++|...+-....+..+-+.|+ |||++|=.
T Consensus 260 DIIVSElL--Gsfg~nEl~pE~Lda~~rfLk-p~Gi~IP~ 296 (448)
T PF05185_consen 260 DIIVSELL--GSFGDNELSPECLDAADRFLK-PDGIMIPS 296 (448)
T ss_dssp EEEEE-----BTTBTTTSHHHHHHHGGGGEE-EEEEEESS
T ss_pred eEEEEecc--CCccccccCHHHHHHHHhhcC-CCCEEeCc
Confidence 99999643 344444566677888888998 99998754
No 151
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.51 E-value=3.6e-07 Score=89.80 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEecc
Q 045407 96 GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 96 ~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
-|...+.++... ........|+|+|||+|.++..+++.+. +|+|+|+|+.|+++++++... .+ ...++.++++|
T Consensus 20 ~d~~i~~~Iv~~-~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~-~~--~~~~v~ii~~D 93 (294)
T PTZ00338 20 KNPLVLDKIVEK-AAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQN-SP--LASKLEVIEGD 93 (294)
T ss_pred CCHHHHHHHHHh-cCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHh-cC--CCCcEEEEECC
Confidence 344455555543 2333345799999999999999999874 699999999999999987522 11 13579999999
Q ss_pred CCCch
Q 045407 176 VLQPL 180 (382)
Q Consensus 176 V~~~~ 180 (382)
+++.+
T Consensus 94 al~~~ 98 (294)
T PTZ00338 94 ALKTE 98 (294)
T ss_pred Hhhhc
Confidence 97655
No 152
>PLN02823 spermine synthase
Probab=98.51 E-value=5.3e-07 Score=90.37 Aligned_cols=112 Identities=22% Similarity=0.205 Sum_probs=80.4
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
..|.+||.+|+|+|.++.++++.....+|+.||||++++++|++.....-+.-...|+.++.+|.++...
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---------- 171 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---------- 171 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh----------
Confidence 3578999999999999999998655568999999999999999874321011123589999999876541
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccch-h-----cccCChhHHHHHHH-HHHh
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYS-C-----CCLHKRADLVLYFK-HVLH 264 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S-~-----~yL~~r~dL~~yFr-~V~~ 264 (382)
. ...+||+|++=.+- . .-|-+ ..+|+ .+.+
T Consensus 172 ------~---------------------------------~~~~yDvIi~D~~dp~~~~~~~~Lyt----~eF~~~~~~~ 208 (336)
T PLN02823 172 ------K---------------------------------RDEKFDVIIGDLADPVEGGPCYQLYT----KSFYERIVKP 208 (336)
T ss_pred ------h---------------------------------CCCCccEEEecCCCccccCcchhhcc----HHHHHHHHHH
Confidence 0 13579999875311 1 11222 35677 8899
Q ss_pred hccCCCcEEEEec
Q 045407 265 ALSKKGGIFVMDL 277 (382)
Q Consensus 265 ~L~~pGGiFVfDl 277 (382)
+|+ |||+||+-.
T Consensus 209 ~L~-p~Gvlv~q~ 220 (336)
T PLN02823 209 KLN-PGGIFVTQA 220 (336)
T ss_pred hcC-CCcEEEEec
Confidence 999 999999854
No 153
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.51 E-value=1.9e-06 Score=65.61 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=70.7
Q ss_pred ccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcc-eEEEeccCCC--chhhhhcccchhhh
Q 045407 117 LQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSR-ISLFHGNVLQ--PLEAKLVRYEPQKL 192 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~R-I~l~~gDV~~--~~~~~~~~~~~~~~ 192 (382)
++|+|||+|..+ .+++.... ..++|+|+++.|+..+...... .... +.++.+|... .+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------------ 113 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-----AGLGLVDFVVADALGGVLP------------ 113 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-----cCCCceEEEEeccccCCCC------------
Confidence 899999999965 33333332 3799999999999985555321 1111 6777777654 22
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCC-CCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSL-PARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
+ .. ..+|++ +....+.+.. ....++.+.+.|+ |+|
T Consensus 114 -----~---------------------------------~~~~~~d~~-~~~~~~~~~~----~~~~~~~~~~~l~-~~g 149 (257)
T COG0500 114 -----F---------------------------------EDSASFDLV-ISLLVLHLLP----PAKALRELLRVLK-PGG 149 (257)
T ss_pred -----C---------------------------------CCCCceeEE-eeeeehhcCC----HHHHHHHHHHhcC-CCc
Confidence 1 12 369999 6666666544 7889999999999 899
Q ss_pred EEEEeccC
Q 045407 272 IFVMDLYG 279 (382)
Q Consensus 272 iFVfDl~g 279 (382)
.|++....
T Consensus 150 ~~~~~~~~ 157 (257)
T COG0500 150 RLVLSDLL 157 (257)
T ss_pred EEEEEecc
Confidence 99997664
No 154
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.51 E-value=4.4e-07 Score=91.42 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=49.6
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+|||||.++..++..+ .+|+|||+|+.+++.|++|... . +-.++.++++|+.++.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~-~---~~~~~~~~~~d~~~~~ 294 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQM-L---GLDNLSFAALDSAKFA 294 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHH-c---CCCcEEEEECCHHHHH
Confidence 479999999999999999887 4799999999999999988532 1 2237899999986543
No 155
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.49 E-value=6.8e-07 Score=86.12 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
+....+|..+.+. ..|.++||+|+++|--++.+|+. .+..+|+.+|.+++..+.|+++. .+.+- ..+|.+++
T Consensus 65 ~~~g~lL~~l~~~----~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~-~~ag~--~~~I~~~~ 137 (247)
T PLN02589 65 ADEGQFLNMLLKL----INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI-QKAGV--AHKIDFRE 137 (247)
T ss_pred HHHHHHHHHHHHH----hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCC--CCceEEEe
Confidence 3444566555544 23678999999999988888865 34568999999999999999874 32221 35899999
Q ss_pred ccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh
Q 045407 174 GNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA 253 (382)
Q Consensus 174 gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~ 253 (382)
||.++... .+.- .+ ...++||+|+.=.+ ..
T Consensus 138 G~a~e~L~-------------~l~~-----------------~~-------------~~~~~fD~iFiDad-------K~ 167 (247)
T PLN02589 138 GPALPVLD-------------QMIE-----------------DG-------------KYHGTFDFIFVDAD-------KD 167 (247)
T ss_pred ccHHHHHH-------------HHHh-----------------cc-------------ccCCcccEEEecCC-------HH
Confidence 99765431 0000 00 00257999987754 34
Q ss_pred HHHHHHHHHHhhccCCCcEEEEe
Q 045407 254 DLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
.-..||..+...|+ |||++|+|
T Consensus 168 ~Y~~y~~~~l~ll~-~GGviv~D 189 (247)
T PLN02589 168 NYINYHKRLIDLVK-VGGVIGYD 189 (247)
T ss_pred HhHHHHHHHHHhcC-CCeEEEEc
Confidence 55899999999999 99999997
No 156
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.45 E-value=1.1e-06 Score=80.79 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=49.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
.++||+|||||.++.+++.+|.. .|++||+|+.+++.+++|. +.++- ..++.++++|+.+.
T Consensus 51 ~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~-~~~~~--~~~~~~~~~D~~~~ 111 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENL-ALLKS--GEQAEVVRNSALRA 111 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHH-HHhCC--cccEEEEehhHHHH
Confidence 36999999999999999999974 8999999999999999874 32221 13689999998543
No 157
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.44 E-value=2.9e-06 Score=84.08 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=113.5
Q ss_pred CCCcccccCCCccHhHHHHHHhCCC--CeEEEEeCCHHHHHHHHHhccccccCCCCcce-EEEeccCCCchhhhhcccch
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSR--RTAVGLDLDLEALEWCMENNLNKVGADGYSRI-SLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~--~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI-~l~~gDV~~~~~~~~~~~~~ 189 (382)
.|.+|+|++||+|+--...+...+. -.|.-.|+|+..++.+++-..+ .+-..| .|.++|..+...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~----~gL~~i~~f~~~dAfd~~~-------- 202 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE----RGLEDIARFEQGDAFDRDS-------- 202 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH----cCCccceEEEecCCCCHhH--------
Confidence 4889999999999999998888876 6899999999999988887533 233344 999999876541
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCC
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKK 269 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~p 269 (382)
+. . -.+++++++..- .+-+|.+.+-+...++.++++|. |
T Consensus 203 --------l~------------------------------~-l~p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~-p 241 (311)
T PF12147_consen 203 --------LA------------------------------A-LDPAPTLAIVSG-LYELFPDNDLVRRSLAGLARALE-P 241 (311)
T ss_pred --------hh------------------------------c-cCCCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhC-C
Confidence 10 0 035567766654 67788888888889999999999 9
Q ss_pred CcEEEEeccCCCchhhhhHh-hhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEecCHHHHHHHHH
Q 045407 270 GGIFVMDLYGGTSSEQKLRL-QRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLE 348 (382)
Q Consensus 270 GGiFVfDl~gg~s~e~kl~~-~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~Le 348 (382)
||.+|. .|.+..-.+.+ .| +-.+ .++++ ...+|-=|-.|+.++.+
T Consensus 242 gG~lIy---TgQPwHPQle~IAr-------~Lts-----------------Hr~g~-------~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 242 GGYLIY---TGQPWHPQLEMIAR-------VLTS-----------------HRDGK-------AWVMRRRSQAEMDQLVE 287 (311)
T ss_pred CcEEEE---cCCCCCcchHHHHH-------HHhc-----------------ccCCC-------ceEEEecCHHHHHHHHH
Confidence 999986 33332211111 01 0000 01222 12357789999999999
Q ss_pred HcCCcEEEEEec
Q 045407 349 EAGFRSVHFWLR 360 (382)
Q Consensus 349 eAGF~~V~v~~r 360 (382)
+|||..+..+++
T Consensus 288 ~aGF~K~~q~ID 299 (311)
T PF12147_consen 288 AAGFEKIDQRID 299 (311)
T ss_pred HcCCchhhheec
Confidence 999999888873
No 158
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.40 E-value=2.1e-06 Score=81.91 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=44.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceE-EEeccCCCchh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRIS-LFHGNVLQPLE 181 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~-l~~gDV~~~~~ 181 (382)
..+||+|||||.+|..+++.|. ..|+|||+++.||.+....+ .++. +-..|++...|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~~---------~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQD---------ERVKVLERTNIRYVTP 134 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhcC---------CCeeEeecCCcccCCH
Confidence 4799999999999999999986 48999999999999844443 2443 34447775553
No 159
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.40 E-value=1.9e-06 Score=81.86 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+.++... ++......|||+|||||.++..+++++. .|+|+|+|+.|++.++++.. . ..++.++++|+.+
T Consensus 16 ~i~~~i~~~-~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~----~--~~~v~v~~~D~~~ 86 (253)
T TIGR00755 16 SVIQKIVEA-ANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLS----L--YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHh-cCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhC----c--CCcEEEEECchhc
Confidence 334444443 3333356899999999999999999996 59999999999999998742 1 2479999999987
Q ss_pred ch
Q 045407 179 PL 180 (382)
Q Consensus 179 ~~ 180 (382)
++
T Consensus 87 ~~ 88 (253)
T TIGR00755 87 VD 88 (253)
T ss_pred CC
Confidence 76
No 160
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=5.6e-07 Score=81.89 Aligned_cols=88 Identities=25% Similarity=0.300 Sum_probs=66.4
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCC
Q 045407 86 LYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADG 165 (382)
Q Consensus 86 LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~ 165 (382)
+.+|-+..|.--++.+.-+-..|. --....|+|||||+|-|++..+--+.+ .|+|+||||++|++|..|+.+ -
T Consensus 22 ~LEQY~T~p~iAasM~~~Ih~Tyg-diEgkkl~DLgcgcGmLs~a~sm~~~e-~vlGfDIdpeALEIf~rNaeE-----f 94 (185)
T KOG3420|consen 22 LLEQYPTRPHIAASMLYTIHNTYG-DIEGKKLKDLGCGCGMLSIAFSMPKNE-SVLGFDIDPEALEIFTRNAEE-----F 94 (185)
T ss_pred hhhhCCCcHHHHHHHHHHHHhhhc-cccCcchhhhcCchhhhHHHhhcCCCc-eEEeeecCHHHHHHHhhchHH-----h
Confidence 445556666666666655555542 222346999999999999888877775 899999999999999998643 2
Q ss_pred CcceEEEeccCCCch
Q 045407 166 YSRISLFHGNVLQPL 180 (382)
Q Consensus 166 ~~RI~l~~gDV~~~~ 180 (382)
..++.|+|+|++++.
T Consensus 95 EvqidlLqcdildle 109 (185)
T KOG3420|consen 95 EVQIDLLQCDILDLE 109 (185)
T ss_pred hhhhheeeeeccchh
Confidence 357889999998876
No 161
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.39 E-value=2.4e-06 Score=79.73 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=47.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.++||+|||||.++++++.++. .+|+|||++++++++|++|. +.++ ..++.++++|+.+
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl-~~~~---~~~v~~~~~D~~~ 113 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNL-ATLK---AGNARVVNTNALS 113 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHH-HHhC---CCcEEEEEchHHH
Confidence 4699999999999998777775 58999999999999999874 3222 2368999999854
No 162
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.37 E-value=1.8e-06 Score=87.02 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=46.6
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec-cCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG-NVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g-DV~~~~ 180 (382)
.|||.|||||.+.++..-.|. .|+|.|+|..|++-|+.|. +..+ -....++.+ ||+.++
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl-~~y~---i~~~~~~~~~Da~~lp 259 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINL-EYYG---IEDYPVLKVLDATNLP 259 (347)
T ss_pred EeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhh-hhhC---cCceeEEEecccccCC
Confidence 699999999999999999995 6999999999999999874 3211 123444555 888877
No 163
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.36 E-value=2.8e-06 Score=80.95 Aligned_cols=119 Identities=23% Similarity=0.247 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec-cC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG-NV 176 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g-DV 176 (382)
.||...... ..|.++||+|.++|-=++.+|..-+ .+++|.+|+++++.+.|+++- .+.+.+ .+|.++.+ |-
T Consensus 49 ~~L~~L~~~----~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~-~~ag~~--~~i~~~~~gda 121 (219)
T COG4122 49 ALLRLLARL----SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL-AEAGVD--DRIELLLGGDA 121 (219)
T ss_pred HHHHHHHHh----cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHH-HHcCCc--ceEEEEecCcH
Confidence 444444443 3477899999999999988888777 778999999999999999974 433333 35888884 65
Q ss_pred CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHH
Q 045407 177 LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLV 256 (382)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~ 256 (382)
++... + +..++||+|+.=.+=-.| .
T Consensus 122 l~~l~-------------~-----------------------------------~~~~~fDliFIDadK~~y-------p 146 (219)
T COG4122 122 LDVLS-------------R-----------------------------------LLDGSFDLVFIDADKADY-------P 146 (219)
T ss_pred HHHHH-------------h-----------------------------------ccCCCccEEEEeCChhhC-------H
Confidence 44331 0 125789999887655444 8
Q ss_pred HHHHHHHhhccCCCcEEEEe--ccCC
Q 045407 257 LYFKHVLHALSKKGGIFVMD--LYGG 280 (382)
Q Consensus 257 ~yFr~V~~~L~~pGGiFVfD--l~gg 280 (382)
.||..+.+.|+ |||+.|+| +++|
T Consensus 147 ~~le~~~~lLr-~GGliv~DNvl~~G 171 (219)
T COG4122 147 EYLERALPLLR-PGGLIVADNVLFGG 171 (219)
T ss_pred HHHHHHHHHhC-CCcEEEEeecccCC
Confidence 89999999999 99999998 3455
No 164
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.36 E-value=3.3e-06 Score=85.99 Aligned_cols=58 Identities=16% Similarity=0.370 Sum_probs=49.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.+|||+|||+|.++..+++.+. .|+|||+|++|+++|++|... .+..++.++++|+.+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~----~~~~nv~~~~~d~~~ 351 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAEL----NGIANVEFLAGTLET 351 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHH----hCCCceEEEeCCHHH
Confidence 5799999999999999998874 799999999999999998532 123479999999855
No 165
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.33 E-value=9e-07 Score=82.51 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=69.2
Q ss_pred CCCcccccCCCcc----HhHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHhcccc-----ccCC------------C-
Q 045407 113 QPLHLQEDFCGTA----LLSTEWLR-----SDSRRTAVGLDLDLEALEWCMENNLNK-----VGAD------------G- 165 (382)
Q Consensus 113 ~p~~LLEl~CGTG----~LS~elar-----~g~~~tVvGVDLS~emL~~A~e~~~~k-----l~~d------------~- 165 (382)
.|.+|+-.||+|| .|++.|.. .+.+.+++|.|||+.+|+.|++-.-.. +... .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5789999999999 47777766 232468999999999999998753220 0000 0
Q ss_pred ------CcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 166 ------YSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 166 ------~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
..+|.|.+.|+.++ ....+.||+|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~--------------------------------------------------~~~~~~fD~I 140 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP--------------------------------------------------DPPFGRFDLI 140 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------------------------------------------------------EEEE
T ss_pred eEChHHcCceEEEecccCCC--------------------------------------------------CcccCCccEE
Confidence 01233333333220 0125679999
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+|=| .+-||.. +.-...++..+++|+ |||++++-.
T Consensus 141 ~CRN-VlIYF~~-~~~~~vl~~l~~~L~-pgG~L~lG~ 175 (196)
T PF01739_consen 141 FCRN-VLIYFDP-ETQQRVLRRLHRSLK-PGGYLFLGH 175 (196)
T ss_dssp EE-S-SGGGS-H-HHHHHHHHHHGGGEE-EEEEEEE-T
T ss_pred EecC-EEEEeCH-HHHHHHHHHHHHHcC-CCCEEEEec
Confidence 9999 7889865 566999999999999 999999943
No 166
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=2.6e-06 Score=82.81 Aligned_cols=126 Identities=20% Similarity=0.203 Sum_probs=92.5
Q ss_pred chHHHHHHhhcC-ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhccc
Q 045407 82 SKFLLYQQSVQS-PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLR-SDSRRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 82 ~~~~LYd~~vq~-p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
++...+.+..|= -+-|+.||.... |-....+|+|-|-|+|.||+.||+ -|+.++|+.+|+.++.++.|++|...
T Consensus 66 d~~~~~~R~tQiIyPKD~~~I~~~~----gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~ 141 (256)
T COG2519 66 DYLLSMKRRTQIIYPKDAGYIVARL----GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE 141 (256)
T ss_pred HHHHhCcCCCceecCCCHHHHHHHc----CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH
Confidence 444444444332 134778876643 323234699999999999999996 77778999999999999999998533
Q ss_pred cccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEE
Q 045407 160 KVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDII 239 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV 239 (382)
.+ -..+|.+..+|+++... ...||+|
T Consensus 142 -~~--l~d~v~~~~~Dv~~~~~---------------------------------------------------~~~vDav 167 (256)
T COG2519 142 -FG--LGDRVTLKLGDVREGID---------------------------------------------------EEDVDAV 167 (256)
T ss_pred -hc--cccceEEEecccccccc---------------------------------------------------ccccCEE
Confidence 21 12358999999987661 2368988
Q ss_pred EEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 240 CAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 240 ~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+- +-.+--.++.++.++|+ |||.+++
T Consensus 168 ~L---------Dmp~PW~~le~~~~~Lk-pgg~~~~ 193 (256)
T COG2519 168 FL---------DLPDPWNVLEHVSDALK-PGGVVVV 193 (256)
T ss_pred EE---------cCCChHHHHHHHHHHhC-CCcEEEE
Confidence 64 33566789999999999 9999988
No 167
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.30 E-value=2e-06 Score=80.90 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=46.5
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.+|||+|||||-+|+-+++. |+...|++||++++++++|+++. .. .+..+|.++++|-..
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l-~~---~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNL-AR---LGIDNVEVVVGDGSE 134 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHH-HH---HTTHSEEEEES-GGG
T ss_pred CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHH-HH---hccCceeEEEcchhh
Confidence 36999999999999999987 44457999999999999999874 32 234579999999643
No 168
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.29 E-value=3.2e-06 Score=78.30 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=75.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
.++|+|||.|.+.+.+|+.-|...++|||++...+..|.++... .+..++.++++|...... .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~----~~l~Nv~~~~~da~~~l~-~------------ 82 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK----RGLKNVRFLRGDARELLR-R------------ 82 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH----HTTSSEEEEES-CTTHHH-H------------
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh----hcccceEEEEccHHHHHh-h------------
Confidence 56799999999999999999999999999999999999888643 244689999999887541 0
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh-----HHHHHHHHHHhhccCCC
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA-----DLVLYFKHVLHALSKKG 270 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~-----dL~~yFr~V~~~L~~pG 270 (382)
+ +....+|.|..+ +.-=|..++. --...+..+++.|+ ||
T Consensus 83 --~--------------------------------~~~~~v~~i~i~-FPDPWpK~rH~krRl~~~~fl~~~~~~L~-~g 126 (195)
T PF02390_consen 83 --L--------------------------------FPPGSVDRIYIN-FPDPWPKKRHHKRRLVNPEFLELLARVLK-PG 126 (195)
T ss_dssp --H--------------------------------STTTSEEEEEEE-S-----SGGGGGGSTTSHHHHHHHHHHEE-EE
T ss_pred --c--------------------------------ccCCchheEEEe-CCCCCcccchhhhhcCCchHHHHHHHHcC-CC
Confidence 1 113456665544 3444555444 23467788899999 99
Q ss_pred cEEEE
Q 045407 271 GIFVM 275 (382)
Q Consensus 271 GiFVf 275 (382)
|.+.|
T Consensus 127 G~l~~ 131 (195)
T PF02390_consen 127 GELYF 131 (195)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99988
No 169
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.28 E-value=4.3e-06 Score=82.55 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=50.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
+.+|||+|||+|.+|.-++..-++.+|++||.|+.++..|.+|... +.. ..++..++-+|
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr-~~l--~g~i~v~~~~m 208 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQR-LKL--SGRIEVIHNIM 208 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHH-Hhh--cCceEEEeccc
Confidence 4579999999999999999999999999999999999999998755 222 24777776555
No 170
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.23 E-value=3.8e-06 Score=82.75 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=79.6
Q ss_pred HHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchh
Q 045407 102 QKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLE 181 (382)
Q Consensus 102 ~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~ 181 (382)
.++...+..|. +||++||=||..|+.-++.|. ..|+.||+|..+|+||++|..-. .-...++.++++|+.+...
T Consensus 115 R~~v~~~~~gk---rvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lN--g~~~~~~~~~~~Dvf~~l~ 188 (286)
T PF10672_consen 115 RKWVRKYAKGK---RVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALN--GLDLDRHRFIQGDVFKFLK 188 (286)
T ss_dssp HHHHHHHCTTC---EEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHT--T-CCTCEEEEES-HHHHHH
T ss_pred HHHHHHHcCCC---ceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc--CCCccceEEEecCHHHHHH
Confidence 34444444443 699999999999999888886 48999999999999999985321 1112479999999865431
Q ss_pred hhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc--ccCChhHHHHHH
Q 045407 182 AKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC--CLHKRADLVLYF 259 (382)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~--yL~~r~dL~~yF 259 (382)
++.- ..+||+|++===+|- =+.-..+....+
T Consensus 189 -------------~~~~----------------------------------~~~fD~IIlDPPsF~k~~~~~~~~y~~L~ 221 (286)
T PF10672_consen 189 -------------RLKK----------------------------------GGRFDLIILDPPSFAKSKFDLERDYKKLL 221 (286)
T ss_dssp -------------HHHH----------------------------------TT-EEEEEE--SSEESSTCEHHHHHHHHH
T ss_pred -------------HHhc----------------------------------CCCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 0000 246777775211111 011124666778
Q ss_pred HHHHhhccCCCcEEEEeccCCC
Q 045407 260 KHVLHALSKKGGIFVMDLYGGT 281 (382)
Q Consensus 260 r~V~~~L~~pGGiFVfDl~gg~ 281 (382)
+.+.+.|+ |||++++=...+.
T Consensus 222 ~~a~~ll~-~gG~l~~~scs~~ 242 (286)
T PF10672_consen 222 RRAMKLLK-PGGLLLTCSCSHH 242 (286)
T ss_dssp HHHHHTEE-EEEEEEEEE--TT
T ss_pred HHHHHhcC-CCCEEEEEcCCcc
Confidence 88999999 9999988655433
No 171
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.22 E-value=6e-06 Score=84.66 Aligned_cols=113 Identities=21% Similarity=0.150 Sum_probs=80.6
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+||++||=||..|+.-|..|.. .||+||+|..+|+||++|..- -.-...++.|+++|+-+......
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA~-~vt~VD~S~~al~~a~~N~~L--Ng~~~~~~~~i~~Dvf~~l~~~~----------- 285 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGAS-EVTSVDLSKRALEWARENAEL--NGLDGDRHRFIVGDVFKWLRKAE----------- 285 (393)
T ss_pred eEEEecccCcHHHHHHHhcCCC-ceEEEeccHHHHHHHHHHHHh--cCCCccceeeehhhHHHHHHHHH-----------
Confidence 6999999999999999999963 899999999999999998532 12223579999999976652100
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc-----cCChhHHHHHHHHHHhhccCCC
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC-----LHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y-----L~~r~dL~~yFr~V~~~L~~pG 270 (382)
- ...+||+|+.===||.= +.=..+.......+.+.|+ ||
T Consensus 286 --~---------------------------------~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pg 329 (393)
T COG1092 286 --R---------------------------------RGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PG 329 (393)
T ss_pred --h---------------------------------cCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC-CC
Confidence 0 02368888753222220 0112456677778899999 99
Q ss_pred cEEEEecc
Q 045407 271 GIFVMDLY 278 (382)
Q Consensus 271 GiFVfDl~ 278 (382)
|++|+=-.
T Consensus 330 G~l~~~s~ 337 (393)
T COG1092 330 GTLVTSSC 337 (393)
T ss_pred CEEEEEec
Confidence 99999543
No 172
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.19 E-value=1.6e-05 Score=71.96 Aligned_cols=110 Identities=16% Similarity=-0.002 Sum_probs=61.7
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+.+|||||||||..++.+++.....+|+.-|+++ .|..++.|... -+.....+|.+..- .|...
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~-N~~~~~~~v~v~~L-----~Wg~~--------- 109 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL-NGSLLDGRVSVRPL-----DWGDE--------- 109 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT-T--------EEEE-------TTS----------
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh-ccccccccccCcEE-----EecCc---------
Confidence 4689999999999999999993335899999999 99888876422 11011234444332 33110
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.... .+...+||+|++.= .+ | ..+.+...++.+.+.|+ ++|.+
T Consensus 110 ----------------~~~~----------------~~~~~~~D~IlasD-v~-Y--~~~~~~~L~~tl~~ll~-~~~~v 152 (173)
T PF10294_consen 110 ----------------LDSD----------------LLEPHSFDVILASD-VL-Y--DEELFEPLVRTLKRLLK-PNGKV 152 (173)
T ss_dssp ----------------HHHH----------------HHS-SSBSEEEEES----S---GGGHHHHHHHHHHHBT-T-TTE
T ss_pred ----------------cccc----------------ccccccCCEEEEec-cc-c--hHHHHHHHHHHHHHHhC-CCCEE
Confidence 0000 01135799999874 32 2 34666777777788888 77776
Q ss_pred EEe
Q 045407 274 VMD 276 (382)
Q Consensus 274 VfD 276 (382)
++=
T Consensus 153 l~~ 155 (173)
T PF10294_consen 153 LLA 155 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 173
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.19 E-value=7.8e-06 Score=74.58 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=48.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRT---------AVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~t---------VvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|+|.|||||.+.+|-+..+.... ++|+|+|+.|++.|++|... .+- ...|.+.+.|+++++
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~-ag~--~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA-AGV--EDYIDFIQWDARELP 101 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH-TT---CGGEEEEE--GGGGG
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh-ccc--CCceEEEecchhhcc
Confidence 5799999999999999988888766 78999999999999998532 221 236899999987766
No 174
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.15 E-value=2.7e-06 Score=81.07 Aligned_cols=119 Identities=17% Similarity=0.068 Sum_probs=78.6
Q ss_pred HHHHHHHHHhh-CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 99 SYLQKFFLIYV-GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~-ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.||.++..+.. +.....+.||.|+|-||+|..++-.-.. +|--||-.+..|+.|++... .....-..+++.-+.
T Consensus 40 ~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~----~~~~~v~~~~~~gLQ 114 (218)
T PF05891_consen 40 NFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLG----KDNPRVGEFYCVGLQ 114 (218)
T ss_dssp HHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTC----CGGCCEEEEEES-GG
T ss_pred HHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhc----ccCCCcceEEecCHh
Confidence 45555444321 1122467899999999999888766554 89999999999999997642 212224667777665
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHH
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVL 257 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~ 257 (382)
++. . ....||+|-+- -.++||++ +||+.
T Consensus 115 ~f~-----------------P---------------------------------~~~~YDlIW~Q-W~lghLTD-~dlv~ 142 (218)
T PF05891_consen 115 DFT-----------------P---------------------------------EEGKYDLIWIQ-WCLGHLTD-EDLVA 142 (218)
T ss_dssp G------------------------------------------------------TT-EEEEEEE-S-GGGS-H-HHHHH
T ss_pred hcc-----------------C---------------------------------CCCcEeEEEeh-HhhccCCH-HHHHH
Confidence 443 1 03579999886 47899887 79999
Q ss_pred HHHHHHhhccCCCcEEEE
Q 045407 258 YFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 258 yFr~V~~~L~~pGGiFVf 275 (382)
+|+++..+|+ |||+.|+
T Consensus 143 fL~RCk~~L~-~~G~Ivv 159 (218)
T PF05891_consen 143 FLKRCKQALK-PNGVIVV 159 (218)
T ss_dssp HHHHHHHHEE-EEEEEEE
T ss_pred HHHHHHHhCc-CCcEEEE
Confidence 9999999999 9999988
No 175
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.14 E-value=7.3e-06 Score=78.03 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=74.5
Q ss_pred chHHHHHHhhcCChhh-HHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 82 SKFLLYQQSVQSPKGD-ISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~D-i~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
.||.-|++-|++++-. ++-+.+.++.. .....|-|+|||.|.|+..+. .+ ++|.-.||-. .|
T Consensus 43 ~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~---~~~~viaD~GCGdA~la~~~~-~~--~~V~SfDLva--------~n--- 105 (219)
T PF05148_consen 43 IYHEGFRQQVKKWPVNPVDVIIEWLKKR---PKSLVIADFGCGDAKLAKAVP-NK--HKVHSFDLVA--------PN--- 105 (219)
T ss_dssp HHHHHHHHHHCTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH---S-----EEEEESS---------SS---
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHhc---CCCEEEEECCCchHHHHHhcc-cC--ceEEEeeccC--------CC---
Confidence 4999999999887644 46665555532 223579999999999996654 33 4799999865 11
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
.+ ++..||...+ | ....+|+||
T Consensus 106 ------~~--Vtacdia~vP-----------------L---------------------------------~~~svDv~V 127 (219)
T PF05148_consen 106 ------PR--VTACDIANVP-----------------L---------------------------------EDESVDVAV 127 (219)
T ss_dssp ------TT--EEES-TTS-S----------------------------------------------------TT-EEEEE
T ss_pred ------CC--EEEecCccCc-----------------C---------------------------------CCCceeEEE
Confidence 12 5788998877 3 246689998
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-ecc
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLY 278 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~ 278 (382)
....-++ .++..+++.|.+.|+ +||++.+ .+-
T Consensus 128 fcLSLMG-----Tn~~~fi~EA~RvLK-~~G~L~IAEV~ 160 (219)
T PF05148_consen 128 FCLSLMG-----TNWPDFIREANRVLK-PGGILKIAEVK 160 (219)
T ss_dssp EES---S-----S-HHHHHHHHHHHEE-EEEEEEEEEEG
T ss_pred EEhhhhC-----CCcHHHHHHHHheec-cCcEEEEEEec
Confidence 8775555 689999999999999 9999988 654
No 176
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.14 E-value=2.2e-05 Score=73.79 Aligned_cols=129 Identities=18% Similarity=0.197 Sum_probs=78.2
Q ss_pred cCChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc------cccC
Q 045407 92 QSPKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN------KVGA 163 (382)
Q Consensus 92 q~p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~------kl~~ 163 (382)
...-||+ ..+.+++.+ ++-..-..++|||||.|+.....|-.-.-..++||.+.+..-+.|...... ..+.
T Consensus 20 ~~~YGEi~~~~~~~il~~-~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 20 SETYGEISPEFVSKILDE-LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp CCCGGGCHHHHHHHHHHH-TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred CcceeecCHHHHHHHHHH-hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666 457777776 343323578999999999976555433334699999999988887653211 1111
Q ss_pred CCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc
Q 045407 164 DGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN 243 (382)
Q Consensus 164 d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn 243 (382)
...++.+.+||++++++... + ...-|+|++-|
T Consensus 99 -~~~~v~l~~gdfl~~~~~~~-------------~----------------------------------~s~AdvVf~Nn 130 (205)
T PF08123_consen 99 -RPGKVELIHGDFLDPDFVKD-------------I----------------------------------WSDADVVFVNN 130 (205)
T ss_dssp ----EEEEECS-TTTHHHHHH-------------H----------------------------------GHC-SEEEE--
T ss_pred -ccccceeeccCccccHhHhh-------------h----------------------------------hcCCCEEEEec
Confidence 23579999999998873211 0 13368999988
Q ss_pred chhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 244 YSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 244 ~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+.|. ++|...++..+..|+ +|-.+|-
T Consensus 131 ~~F~-----~~l~~~L~~~~~~lk-~G~~IIs 156 (205)
T PF08123_consen 131 TCFD-----PDLNLALAELLLELK-PGARIIS 156 (205)
T ss_dssp TTT------HHHHHHHHHHHTTS--TT-EEEE
T ss_pred cccC-----HHHHHHHHHHHhcCC-CCCEEEE
Confidence 7554 788999999999998 7766664
No 177
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.12 E-value=7.6e-06 Score=83.30 Aligned_cols=101 Identities=11% Similarity=0.176 Sum_probs=73.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.+|||++||||.+++++++......|+++|+++.+++.+++|... .+-..+.++++|+..+..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----N~~~~~~v~~~Da~~~l~------------- 121 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----NGLENEKVFNKDANALLH------------- 121 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----hCCCceEEEhhhHHHHHh-------------
Confidence 469999999999999998865434799999999999999987421 112246688888754330
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFV 274 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFV 274 (382)
..++||+|+. |-++ . -..++..+...++ +||++-
T Consensus 122 -------------------------------------~~~~fD~V~l--DP~G---s---~~~~l~~al~~~~-~~gily 155 (382)
T PRK04338 122 -------------------------------------EERKFDVVDI--DPFG---S---PAPFLDSAIRSVK-RGGLLC 155 (382)
T ss_pred -------------------------------------hcCCCCEEEE--CCCC---C---cHHHHHHHHHHhc-CCCEEE
Confidence 0245899987 3433 2 2456778788898 899999
Q ss_pred E---ecc
Q 045407 275 M---DLY 278 (382)
Q Consensus 275 f---Dl~ 278 (382)
+ |+-
T Consensus 156 vSAtD~~ 162 (382)
T PRK04338 156 VTATDTA 162 (382)
T ss_pred EEecCch
Confidence 8 653
No 178
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.11 E-value=1.3e-05 Score=78.91 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=85.5
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.|++||-+|-|.|..+.++++..+-.+|+-||||+..++||++.....-+...-.|+.++.+|..+.-.
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~----------- 144 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR----------- 144 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH-----------
Confidence 367999999999999999999998889999999999999999986552211114799999999766541
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH---HHHHHHHHHhhccCC
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD---LVLYFKHVLHALSKK 269 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d---L~~yFr~V~~~L~~p 269 (382)
+. ..+||+|+.= |.... .+++ -..+|+.++++|+ +
T Consensus 145 -------------------------------------~~-~~~fDvIi~D--~tdp~-gp~~~Lft~eFy~~~~~~L~-~ 182 (282)
T COG0421 145 -------------------------------------DC-EEKFDVIIVD--STDPV-GPAEALFTEEFYEGCRRALK-E 182 (282)
T ss_pred -------------------------------------hC-CCcCCEEEEc--CCCCC-CcccccCCHHHHHHHHHhcC-C
Confidence 01 2379999874 44441 2211 1679999999999 9
Q ss_pred CcEEEEe
Q 045407 270 GGIFVMD 276 (382)
Q Consensus 270 GGiFVfD 276 (382)
+||||.-
T Consensus 183 ~Gi~v~q 189 (282)
T COG0421 183 DGIFVAQ 189 (282)
T ss_pred CcEEEEe
Confidence 9999996
No 179
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.4e-05 Score=73.19 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=74.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
...|||+|||+|-.++-+++..- +|+.|+++++..+.|+++. . .-++.+|.+.++|=..= |
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L-~---~lg~~nV~v~~gDG~~G-~------------ 133 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNL-E---TLGYENVTVRHGDGSKG-W------------ 133 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHH-H---HcCCCceEEEECCcccC-C------------
Confidence 35799999999999999999985 7999999999999999873 3 33556799999995321 1
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
-...+||.|+... +..-+. + ...+.|+ +||++
T Consensus 134 -------------------------------------~~~aPyD~I~Vta-aa~~vP---~------~Ll~QL~-~gGrl 165 (209)
T COG2518 134 -------------------------------------PEEAPYDRIIVTA-AAPEVP---E------ALLDQLK-PGGRL 165 (209)
T ss_pred -------------------------------------CCCCCcCEEEEee-ccCCCC---H------HHHHhcc-cCCEE
Confidence 0146899999876 333222 1 4456898 99999
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|+=+-
T Consensus 166 v~PvG 170 (209)
T COG2518 166 VIPVG 170 (209)
T ss_pred EEEEc
Confidence 99664
No 180
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.07 E-value=2.6e-05 Score=76.33 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCCcccccCCCcc----HhHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHhccc-ccc-CC--CCcceEEEeccCCCc
Q 045407 113 QPLHLQEDFCGTA----LLSTEWLRSDS-----RRTAVGLDLDLEALEWCMENNLN-KVG-AD--GYSRISLFHGNVLQP 179 (382)
Q Consensus 113 ~p~~LLEl~CGTG----~LS~elar~g~-----~~tVvGVDLS~emL~~A~e~~~~-kl~-~d--~~~RI~l~~gDV~~~ 179 (382)
.|.+|.-.||+|| .|++.+++.++ +..++|.|||..+|+.|+.-.-. .-. .. ...+-.+|...--.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~- 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG- 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC-
Confidence 4788999999999 57777777764 57899999999999998864322 000 00 00011222111000
Q ss_pred hhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHH
Q 045407 180 LEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYF 259 (382)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yF 259 (382)
. -.|+ +++-+.+.+.. -+.+...+..+.||+|+|=| .+.||... .-.+.+
T Consensus 175 ~--y~v~---~~ir~~V~F~~-----------------------~NLl~~~~~~~~fD~IfCRN-VLIYFd~~-~q~~il 224 (268)
T COG1352 175 S--YRVK---EELRKMVRFRR-----------------------HNLLDDSPFLGKFDLIFCRN-VLIYFDEE-TQERIL 224 (268)
T ss_pred c--EEEC---hHHhcccEEee-----------------------cCCCCCccccCCCCEEEEcc-eEEeeCHH-HHHHHH
Confidence 0 0111 11111222210 00011111256799999998 99998764 558899
Q ss_pred HHHHhhccCCCcEEEEec
Q 045407 260 KHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 260 r~V~~~L~~pGGiFVfDl 277 (382)
+..+..|+ |||++++..
T Consensus 225 ~~f~~~L~-~gG~LflG~ 241 (268)
T COG1352 225 RRFADSLK-PGGLLFLGH 241 (268)
T ss_pred HHHHHHhC-CCCEEEEcc
Confidence 99999999 999999954
No 181
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.04 E-value=1.2e-05 Score=73.97 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=47.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++||||||||.++.|-+.||.. .|+.||.|+.++...++|. ++++.. .++.++.+|+....
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~-~~l~~~--~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNL-EKLGLE--DKIRVIKGDAFKFL 105 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHH-HHHT-G--GGEEEEESSHHHHH
T ss_pred CeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHH-HHhCCC--cceeeeccCHHHHH
Confidence 46999999999999999999985 8999999999999988874 444432 36889999975443
No 182
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.03 E-value=1.9e-05 Score=80.40 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=83.1
Q ss_pred cCChhhHHHH-HHHHHHhhCCCCCCcccccCCCccHhHHHHHHh--CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcc
Q 045407 92 QSPKGDISYL-QKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS--DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSR 168 (382)
Q Consensus 92 q~p~~Di~yl-~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~--g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~R 168 (382)
|-..=|++-+ .+.|.+..++..+.++||++||||.++++++++ |. ..|+++|+++++++.+++|... . +-..
T Consensus 22 ~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga-~~Vv~nD~n~~Av~~i~~N~~~-N---~~~~ 96 (374)
T TIGR00308 22 MQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGV-REVFANDINPKAVESIKNNVEY-N---SVEN 96 (374)
T ss_pred hhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCC-CEEEEEeCCHHHHHHHHHHHHH-h---CCCc
Confidence 3455566543 333433233333468999999999999999998 44 4899999999999999987532 1 1124
Q ss_pred eEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcc
Q 045407 169 ISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCC 248 (382)
Q Consensus 169 I~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~y 248 (382)
+.++++|...+.. . ....||+|.. |-+.
T Consensus 97 ~~v~~~Da~~~l~----------------~---------------------------------~~~~fDvIdl--DPfG- 124 (374)
T TIGR00308 97 IEVPNEDAANVLR----------------Y---------------------------------RNRKFHVIDI--DPFG- 124 (374)
T ss_pred EEEEchhHHHHHH----------------H---------------------------------hCCCCCEEEe--CCCC-
Confidence 7888888755440 0 0245898876 5543
Q ss_pred cCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 249 LHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 249 L~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
+. ..++..+.+.++ +||++.+
T Consensus 125 --s~---~~fld~al~~~~-~~glL~v 145 (374)
T TIGR00308 125 --TP---APFVDSAIQASA-ERGLLLV 145 (374)
T ss_pred --Cc---HHHHHHHHHhcc-cCCEEEE
Confidence 22 357888889998 8999988
No 183
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.99 E-value=9.3e-06 Score=77.77 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=79.4
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
.|.+||=+|=|.|.++.++++..+-..|+.||||+.+++.|++........-...|+.++.+|-+....
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~----------- 144 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK----------- 144 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH-----------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH-----------
Confidence 588999999999999999998875568999999999999999864321111123589999999766541
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCC-CccEEEEccch-hcccCChhHHHHHHHHHHhhccCCC
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLP-ARDIICAFNYS-CCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fDiV~afn~S-~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
- ... +||+|+.=.+. .+.-.. -=-..+|+.+.++|+ ||
T Consensus 145 -----~---------------------------------~~~~~yDvIi~D~~dp~~~~~~-l~t~ef~~~~~~~L~-~~ 184 (246)
T PF01564_consen 145 -----E---------------------------------TQEEKYDVIIVDLTDPDGPAPN-LFTREFYQLCKRRLK-PD 184 (246)
T ss_dssp -----T---------------------------------SSST-EEEEEEESSSTTSCGGG-GSSHHHHHHHHHHEE-EE
T ss_pred -----h---------------------------------ccCCcccEEEEeCCCCCCCccc-ccCHHHHHHHHhhcC-CC
Confidence 0 023 79999874332 111000 012678999999999 99
Q ss_pred cEEEEec
Q 045407 271 GIFVMDL 277 (382)
Q Consensus 271 GiFVfDl 277 (382)
|+|++-.
T Consensus 185 Gv~v~~~ 191 (246)
T PF01564_consen 185 GVLVLQA 191 (246)
T ss_dssp EEEEEEE
T ss_pred cEEEEEc
Confidence 9999976
No 184
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.99 E-value=2.7e-05 Score=77.15 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=52.1
Q ss_pred CcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|..||+|-+|..+++..+ ..+|+|+|.|++||+.|+++.. . ..|+.++++|+.++.
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~----~--~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK----P--FGRFTLVHGNFSNLK 81 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc----c--CCcEEEEeCCHHHHH
Confidence 4799999999999999999974 5789999999999999998742 1 358999999998876
No 185
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.97 E-value=5e-05 Score=73.93 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=72.1
Q ss_pred CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccch
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
++....+|||+|||+-.....-|..-. ..++..|.++.-+++-++-... + ..++|+-.++.
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f-~~I~l~dy~~~N~~el~kWl~~---------------~-~a~DWs~~~~~-- 113 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWF-EEIVLSDYSEQNREELEKWLRK---------------E-GAFDWSPFWKY-- 113 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTE-EEEEEEESSHHHHHHHHHHHTT-----------------TS--THHHHHH--
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhh-cceEEeeccHhhHHHHHHHHCC---------------C-CCCCccHHHHH--
Confidence 444467899999999777544444444 4799999999988866555311 1 11223211110
Q ss_pred hhhhhccccccccCcc---ccchhhh---hhccccccCCCCCcCccCCCCC-CccEEEEccchhcccCChhHHHHHHHHH
Q 045407 190 QKLVRNISLEECDNTL---ETSTIES---AVQDNFTASSGDNCSKQKSSLP-ARDIICAFNYSCCCLHKRADLVLYFKHV 262 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~fDiV~afn~S~~yL~~r~dL~~yFr~V 262 (382)
|.+|-- ..+. ..+.+-+ .+-.|++... ++.......+ ++|+|++++..-+--.++++-.+.++++
T Consensus 114 ---v~~lEg---~~~~~~e~e~~lR~~Vk~Vv~cDV~~~--~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni 185 (256)
T PF01234_consen 114 ---VCELEG---KREKWEEKEEKLRRAVKQVVPCDVTQP--NPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNI 185 (256)
T ss_dssp ---HHHHTT---SSSGHHHHHHHHHHHEEEEEE--TTSS--STTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHH
T ss_pred ---HHhccC---CcchhhhHHHHHHHhhceEEEeeccCC--CCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHH
Confidence 000000 0000 0000101 1112333111 1111112234 5999988876666667999999999999
Q ss_pred HhhccCCCcEEEE
Q 045407 263 LHALSKKGGIFVM 275 (382)
Q Consensus 263 ~~~L~~pGGiFVf 275 (382)
..+|+ |||.|||
T Consensus 186 ~~lLk-pGG~Lil 197 (256)
T PF01234_consen 186 SSLLK-PGGHLIL 197 (256)
T ss_dssp HTTEE-EEEEEEE
T ss_pred HHHcC-CCcEEEE
Confidence 99999 9999999
No 186
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.96 E-value=2.6e-05 Score=78.01 Aligned_cols=58 Identities=16% Similarity=-0.018 Sum_probs=45.3
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
..++||+|||+|.+...++.+-+..+++|+|+|+.+++.|+++.... . .-..+|.+++
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-p-~l~~~I~~~~ 172 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-P-GLNGAIRLRL 172 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-c-CCcCcEEEEE
Confidence 35799999999999888888867778999999999999999985331 0 0123777764
No 187
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=3e-05 Score=75.66 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=70.7
Q ss_pred cCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEE
Q 045407 92 QSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISL 171 (382)
Q Consensus 92 q~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l 171 (382)
|+.--|-..++++... .......+|+|+|+|+|.||..|++++. .|++|.||+.++..-++... .+.++.+
T Consensus 10 QnFL~d~~v~~kIv~~-a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~------~~~n~~v 80 (259)
T COG0030 10 QNFLIDKNVIDKIVEA-ANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFA------PYDNLTV 80 (259)
T ss_pred cccccCHHHHHHHHHh-cCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcc------cccceEE
Confidence 3344455556676664 4444357899999999999999999996 59999999999998888742 2458999
Q ss_pred EeccCCCchhhhhcccchhhhhhcccc
Q 045407 172 FHGNVLQPLEAKLVRYEPQKLVRNISL 198 (382)
Q Consensus 172 ~~gDV~~~~~~~~~~~~~~~~~~~~~l 198 (382)
++||++..+++.+. .+-.+|.||-.
T Consensus 81 i~~DaLk~d~~~l~--~~~~vVaNlPY 105 (259)
T COG0030 81 INGDALKFDFPSLA--QPYKVVANLPY 105 (259)
T ss_pred EeCchhcCcchhhc--CCCEEEEcCCC
Confidence 99999999865443 33444555444
No 188
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.91 E-value=2.9e-05 Score=77.92 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=48.6
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|||+|||||.+|..|++.. ..|+|||+|++|++.|++|... .+-.++.++++|+.++.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~----~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAA----NNIDNVQIIRMSAEEFT 258 (353)
T ss_pred cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH----cCCCcEEEEEcCHHHHH
Confidence 59999999999999988876 3799999999999999998532 12236999999986543
No 189
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.91 E-value=5.5e-05 Score=74.45 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=81.3
Q ss_pred chHHHHHHhhcCCh-hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 82 SKFLLYQQSVQSPK-GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 82 ~~~~LYd~~vq~p~-~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
-||..|.+-|+-++ .-++-|.+.++.- .....|-|+|||-|.|+. +-+..|.-+||-+ .
T Consensus 151 lYH~gfr~QV~kWP~nPld~ii~~ik~r---~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a---------~--- 210 (325)
T KOG3045|consen 151 LYHAGFRSQVKKWPENPLDVIIRKIKRR---PKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA---------V--- 210 (325)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHhC---cCceEEEecccchhhhhh-----ccccceeeeeeec---------C---
Confidence 47777777776544 4445555555542 224578999999999975 3335799999865 1
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
+.| ++..||++.+ + .....||+|
T Consensus 211 -----~~~--V~~cDm~~vP-----------------l---------------------------------~d~svDvaV 233 (325)
T KOG3045|consen 211 -----NER--VIACDMRNVP-----------------L---------------------------------EDESVDVAV 233 (325)
T ss_pred -----CCc--eeeccccCCc-----------------C---------------------------------ccCcccEEE
Confidence 123 5778999887 3 257799998
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEE-ecc
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM-DLY 278 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~ 278 (382)
++...++ .++...++.+++.|+ +||++-+ .+-
T Consensus 234 ~CLSLMg-----tn~~df~kEa~RiLk-~gG~l~IAEv~ 266 (325)
T KOG3045|consen 234 FCLSLMG-----TNLADFIKEANRILK-PGGLLYIAEVK 266 (325)
T ss_pred eeHhhhc-----ccHHHHHHHHHHHhc-cCceEEEEehh
Confidence 8776666 689999999999999 9998766 443
No 190
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.90 E-value=2.7e-05 Score=78.57 Aligned_cols=104 Identities=18% Similarity=0.185 Sum_probs=72.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..|||.|||||.||+--|+.|++ .|+|||-|. +.+.|++-.... + -...|.+++|.|-+..
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~-~V~aVe~S~-ia~~a~~iv~~N-~--~~~ii~vi~gkvEdi~-------------- 122 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGAR-KVYAVEASS-IADFARKIVKDN-G--LEDVITVIKGKVEDIE-------------- 122 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcc-eEEEEechH-HHHHHHHHHHhc-C--ccceEEEeecceEEEe--------------
Confidence 46999999999999999999985 999999998 448887764331 1 1236999999987665
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHH-hhccCCCcEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVL-HALSKKGGIF 273 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~-~~L~~pGGiF 273 (382)
| +.+++|||++=--.+|-|. +......-.++ +.|+ |||+.
T Consensus 123 ---L---------------------------------P~eKVDiIvSEWMGy~Ll~--EsMldsVl~ARdkwL~-~~G~i 163 (346)
T KOG1499|consen 123 ---L---------------------------------PVEKVDIIVSEWMGYFLLY--ESMLDSVLYARDKWLK-EGGLI 163 (346)
T ss_pred ---c---------------------------------CccceeEEeehhhhHHHHH--hhhhhhhhhhhhhccC-CCceE
Confidence 3 2478999998644444332 33333333333 4687 99986
Q ss_pred EEe
Q 045407 274 VMD 276 (382)
Q Consensus 274 VfD 276 (382)
+=|
T Consensus 164 ~P~ 166 (346)
T KOG1499|consen 164 YPD 166 (346)
T ss_pred ccc
Confidence 544
No 191
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.88 E-value=0.0001 Score=74.97 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=99.0
Q ss_pred chHHHHHHhhcCChhhHHHH------HHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 82 SKFLLYQQSVQSPKGDISYL------QKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~Di~yl------~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
-||+.|-.+.|.-+--.+|+ ..++.++.. -..+.|+|.|||+|.||.--++.|.+ +|.+|.-|. |-++|++
T Consensus 141 ~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sD-F~~kiVlDVGaGSGILS~FAaqAGA~-~vYAvEAS~-MAqyA~~ 217 (517)
T KOG1500|consen 141 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSD-FQDKIVLDVGAGSGILSFFAAQAGAK-KVYAVEASE-MAQYARK 217 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccc-cCCcEEEEecCCccHHHHHHHHhCcc-eEEEEehhH-HHHHHHH
Confidence 48888877765444333443 233332221 11357999999999999999999985 999999986 8888887
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
-....+- ..||.++.|-+.++. | +++
T Consensus 218 Lv~~N~~---~~rItVI~GKiEdie-----------------L----------------------------------PEk 243 (517)
T KOG1500|consen 218 LVASNNL---ADRITVIPGKIEDIE-----------------L----------------------------------PEK 243 (517)
T ss_pred HHhcCCc---cceEEEccCcccccc-----------------C----------------------------------chh
Confidence 6432222 248999999987776 4 567
Q ss_pred ccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE-EEE--eccC
Q 045407 236 RDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI-FVM--DLYG 279 (382)
Q Consensus 236 fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi-FVf--Dl~g 279 (382)
.|+|++= -++|+.-.+-....+-++++.|+ |.|. |=- |+|-
T Consensus 244 ~DviISE--PMG~mL~NERMLEsYl~Ark~l~-P~GkMfPT~gdiHl 287 (517)
T KOG1500|consen 244 VDVIISE--PMGYMLVNERMLESYLHARKWLK-PNGKMFPTVGDIHL 287 (517)
T ss_pred ccEEEec--cchhhhhhHHHHHHHHHHHhhcC-CCCcccCcccceee
Confidence 9999985 56777777888888999999999 6664 322 6663
No 192
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.86 E-value=2.6e-05 Score=78.43 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=49.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|||+|||+|.+|..|++... .|+|||+|+.|++.|++|... .+-.++.++++|+.+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~----~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAA----NGIDNVQIIRMSAEEFT 267 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHH----hCCCcEEEEECCHHHHH
Confidence 3599999999999999998763 799999999999999988532 12237999999986543
No 193
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.79 E-value=0.00015 Score=69.86 Aligned_cols=127 Identities=21% Similarity=0.309 Sum_probs=90.3
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCccccc--CCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEE
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQED--FCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISL 171 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl--~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l 171 (382)
+.-...|++.+.+.+- |.+.+|+ |||-.+|+..++=.. +++|+++|++++..+|+.+.. .+.+. ...|.+
T Consensus 58 ~~d~g~fl~~li~~~~----ak~~lelGvfTGySaL~~Alalp~-dGrv~a~eid~~~~~~~~~~~-k~agv--~~KI~~ 129 (237)
T KOG1663|consen 58 GPDKGQFLQMLIRLLN----AKRTLELGVFTGYSALAVALALPE-DGRVVAIEIDADAYEIGLELV-KLAGV--DHKITF 129 (237)
T ss_pred ChHHHHHHHHHHHHhC----CceEEEEecccCHHHHHHHHhcCC-CceEEEEecChHHHHHhHHHH-Hhccc--cceeee
Confidence 4444578888887642 5568898 566666666655433 578999999999999997754 32232 247999
Q ss_pred EeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC
Q 045407 172 FHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK 251 (382)
Q Consensus 172 ~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~ 251 (382)
++|.-++-.. +|+++. ..++||.|+.=-+=-+|
T Consensus 130 i~g~a~esLd---------~l~~~~-----------------------------------~~~tfDfaFvDadK~nY--- 162 (237)
T KOG1663|consen 130 IEGPALESLD---------ELLADG-----------------------------------ESGTFDFAFVDADKDNY--- 162 (237)
T ss_pred eecchhhhHH---------HHHhcC-----------------------------------CCCceeEEEEccchHHH---
Confidence 9999766542 222222 25789999887766666
Q ss_pred hhHHHHHHHHHHhhccCCCcEEEEe--ccCC
Q 045407 252 RADLVLYFKHVLHALSKKGGIFVMD--LYGG 280 (382)
Q Consensus 252 r~dL~~yFr~V~~~L~~pGGiFVfD--l~gg 280 (382)
..|+.+..+.|+ +||++++| +++|
T Consensus 163 ----~~y~e~~l~Llr-~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 163 ----SNYYERLLRLLR-VGGVIVVDNVLWPG 188 (237)
T ss_pred ----HHHHHHHHhhcc-cccEEEEeccccCC
Confidence 389999999999 99999998 4566
No 194
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.77 E-value=3.8e-05 Score=70.20 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=46.4
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.|+|+|||.|-.++.+|+.+. +|++||+|+..|+.|+.|+.- .|- ..+|.++++|..+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~v-YGv--~~~I~~i~gD~~~~~ 61 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEV-YGV--ADNIDFICGDFFELL 61 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHH-TT---GGGEEEEES-HHHHG
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHH-cCC--CCcEEEEeCCHHHHH
Confidence 588999999999999999985 699999999999999988643 111 358999999986643
No 195
>PRK00536 speE spermidine synthase; Provisional
Probab=97.77 E-value=0.00014 Score=71.01 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=74.0
Q ss_pred CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...|.+||=+|-|-|..+.|++|... +|+-||||+++++.|++....-.++-...|+.++.. +.+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~------------ 134 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD------------ 134 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh------------
Confidence 44589999999999999999999853 799999999999999996543111112346666641 110
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
....+||+|+.= |. .+ ...|+.++++|+ ||
T Consensus 135 ----------------------------------------~~~~~fDVIIvD--s~---~~----~~fy~~~~~~L~-~~ 164 (262)
T PRK00536 135 ----------------------------------------LDIKKYDLIICL--QE---PD----IHKIDGLKRMLK-ED 164 (262)
T ss_pred ----------------------------------------ccCCcCCEEEEc--CC---CC----hHHHHHHHHhcC-CC
Confidence 013579999964 32 11 578899999999 99
Q ss_pred cEEEEe
Q 045407 271 GIFVMD 276 (382)
Q Consensus 271 GiFVfD 276 (382)
|+||.-
T Consensus 165 Gi~v~Q 170 (262)
T PRK00536 165 GVFISV 170 (262)
T ss_pred cEEEEC
Confidence 999995
No 196
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.77 E-value=0.00012 Score=69.98 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=81.9
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCc-ceEEEeccCCCchhhhhcccchhhhhh
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYS-RISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~-RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
.++|+|||.|.+.+.+|+..|....+||++....+..|.++..+ .+. +|.++++|..++...
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~-----~~l~Nlri~~~DA~~~l~~------------ 113 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKE-----LGLKNLRLLCGDAVEVLDY------------ 113 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHH-----cCCCcEEEEcCCHHHHHHh------------
Confidence 56799999999999999999999999999999999999998643 234 899999998776620
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHH-----HHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADL-----VLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL-----~~yFr~V~~~L~~p 269 (382)
+ ++.+..|-|..+ ++-=|..+|..- ...++.+.+.|+ |
T Consensus 114 ---~--------------------------------~~~~sl~~I~i~-FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~ 156 (227)
T COG0220 114 ---L--------------------------------IPDGSLDKIYIN-FPDPWPKKRHHKRRLTQPEFLKLYARKLK-P 156 (227)
T ss_pred ---c--------------------------------CCCCCeeEEEEE-CCCCCCCccccccccCCHHHHHHHHHHcc-C
Confidence 1 112256666544 355666666522 345677888998 9
Q ss_pred CcEEEE--ec
Q 045407 270 GGIFVM--DL 277 (382)
Q Consensus 270 GGiFVf--Dl 277 (382)
||.|-| |.
T Consensus 157 gG~l~~aTD~ 166 (227)
T COG0220 157 GGVLHFATDN 166 (227)
T ss_pred CCEEEEEecC
Confidence 999999 65
No 197
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.76 E-value=0.0001 Score=72.97 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=57.7
Q ss_pred HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 101 LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 101 l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..++.. ..-+.+-.|||.|-|||.|+..|+..|. +|+++.+|+-|++.-.++-. +.+....+++++||+...+
T Consensus 47 ~~~I~~k-a~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~---gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 47 IDQIVEK-ADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQ---GTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHhc-cCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhc---CCCccceeeEEecccccCC
Confidence 3444443 3344456799999999999999999995 79999999999998877743 2334468999999997766
No 198
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.71 E-value=7.8e-05 Score=66.74 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=71.5
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~ 192 (382)
+..++|+||++|-.+..+++++ ....|+|||+.+. .. ...+..+++|+.++.... .
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-------~~--------~~~~~~i~~d~~~~~~~~--------~ 80 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-------DP--------LQNVSFIQGDITNPENIK--------D 80 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-------GS---------TTEEBTTGGGEEEEHSH--------H
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-------cc--------ccceeeeecccchhhHHH--------h
Confidence 4789999999999999999998 4568999999984 11 124677799987664110 1
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc---chhc----ccCChhHHHHHHHHHHhh
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN---YSCC----CLHKRADLVLYFKHVLHA 265 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn---~S~~----yL~~r~dL~~yFr~V~~~ 265 (382)
++.+.- . ....+|+|+|=- .+-. .+....-+...+.-+...
T Consensus 81 i~~~~~-----------------~---------------~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~ 128 (181)
T PF01728_consen 81 IRKLLP-----------------E---------------SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALEL 128 (181)
T ss_dssp GGGSHG-----------------T---------------TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcc-----------------c---------------cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 111000 0 025789998754 0000 112224455666667778
Q ss_pred ccCCCcEEEEeccCCCch
Q 045407 266 LSKKGGIFVMDLYGGTSS 283 (382)
Q Consensus 266 L~~pGGiFVfDl~gg~s~ 283 (382)
|+ |||.||+=++.+...
T Consensus 129 L~-~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 129 LK-PGGTFVIKVFKGPEI 145 (181)
T ss_dssp HC-TTEEEEEEESSSTTS
T ss_pred hc-CCCEEEEEeccCccH
Confidence 98 999999988865443
No 199
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00017 Score=74.92 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=54.9
Q ss_pred HHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 106 LIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 106 ~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++......+|+|++||.|.++..||++.. .|+||++++++++.|++|+.. .+..++.|..++..++.
T Consensus 286 ~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~----n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 286 LEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAA----NGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHH----cCCCcEEEEeCCHHHHh
Confidence 3344444345799999999999999998885 699999999999999998633 34446899999977665
No 200
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.62 E-value=0.00013 Score=68.55 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=46.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|+|+|||-|-+++..|+.+...+|+++|++|.++++.+++... ++ ..+|..+++|.+++.
T Consensus 103 e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFL 165 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG--
T ss_pred eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhc
Confidence 479999999999999999955556899999999999999887543 32 247999999987765
No 201
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.61 E-value=0.00017 Score=69.78 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLR-SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
.-||+||...+....| .+|+|-|-|+|.||..|++ -|+..+|+..|+.++..+.|+++... .+- ...|.+.+
T Consensus 26 pkD~~~I~~~l~i~pG----~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl--~~~v~~~~ 98 (247)
T PF08704_consen 26 PKDISYILMRLDIRPG----SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGL--DDNVTVHH 98 (247)
T ss_dssp HHHHHHHHHHTT--TT-----EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTC--CTTEEEEE
T ss_pred CchHHHHHHHcCCCCC----CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCC--CCCceeEe
Confidence 4577887766544332 3599999999999999996 56778999999999999999998543 222 23799999
Q ss_pred ccCCCch
Q 045407 174 GNVLQPL 180 (382)
Q Consensus 174 gDV~~~~ 180 (382)
+||++..
T Consensus 99 ~Dv~~~g 105 (247)
T PF08704_consen 99 RDVCEEG 105 (247)
T ss_dssp S-GGCG-
T ss_pred cceeccc
Confidence 9997543
No 202
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.60 E-value=0.00033 Score=67.86 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=49.7
Q ss_pred HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 101 LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-------DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 101 l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-------g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
|.++.-..+......+|+|.+||||.+.++..+. ....+++|+|+++.++.+|+-+..- .......+.+.+
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l--~~~~~~~~~i~~ 111 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL--HGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH--TTHHCBGCEEEE
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh--hccccccccccc
Confidence 3444433333333447999999999999988873 3456899999999999999876421 111223456888
Q ss_pred ccCCCch
Q 045407 174 GNVLQPL 180 (382)
Q Consensus 174 gDV~~~~ 180 (382)
+|.+..+
T Consensus 112 ~d~l~~~ 118 (311)
T PF02384_consen 112 GDSLEND 118 (311)
T ss_dssp S-TTTSH
T ss_pred ccccccc
Confidence 9976555
No 203
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.60 E-value=9.5e-05 Score=74.26 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+.+....+++.. +..|+|++||+|.+|..+|+... .|+||+++++|++.|++|+.. .+-.++.|+++++.+
T Consensus 183 ~~l~~~~~~~l~~~-~~~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~----N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLS-KGDVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKL----NGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT--TTEEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHH----TT--SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcC-CCcEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHH----cCCCcceEEEeeccc
Confidence 34444444555433 34799999999999999999885 699999999999999998643 233468999888654
Q ss_pred c
Q 045407 179 P 179 (382)
Q Consensus 179 ~ 179 (382)
+
T Consensus 256 ~ 256 (352)
T PF05958_consen 256 F 256 (352)
T ss_dssp C
T ss_pred h
Confidence 4
No 204
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.52 E-value=0.00045 Score=75.35 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=48.9
Q ss_pred CcccccCCCccHhHHHHHHhCC------------------------------------------CCeEEEEeCCHHHHHH
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS------------------------------------------RRTAVGLDLDLEALEW 152 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~------------------------------------------~~tVvGVDLS~emL~~ 152 (382)
..|+|.+||+|.+.+|-|.... ...++|+|+|+.|++.
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 5799999999999999875311 1369999999999999
Q ss_pred HHHhccccccCCCCcceEEEeccCCCch
Q 045407 153 CMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 153 A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|++|... .+- ..+|.+.++|+.++.
T Consensus 272 A~~N~~~-~g~--~~~i~~~~~D~~~~~ 296 (702)
T PRK11783 272 ARKNARR-AGV--AELITFEVKDVADLK 296 (702)
T ss_pred HHHHHHH-cCC--CcceEEEeCChhhcc
Confidence 9998643 111 236899999997765
No 205
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.46 E-value=0.00013 Score=70.97 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=86.7
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
..+|+|||-|.++..+...+. ...+-+|-|-.|+.-|+.- .+....++.+.+|=..++
T Consensus 75 ~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~------qdp~i~~~~~v~DEE~Ld--------------- 132 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDA------QDPSIETSYFVGDEEFLD--------------- 132 (325)
T ss_pred ceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhcc------CCCceEEEEEecchhccc---------------
Confidence 467999999999999999996 4899999999999999875 244567888998855444
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
|...++|+|++..-.+| -.+|-..+..+..+|+ |+|+||-
T Consensus 133 -----------------------------------f~ens~DLiisSlslHW----~NdLPg~m~~ck~~lK-PDg~Fia 172 (325)
T KOG2940|consen 133 -----------------------------------FKENSVDLIISSLSLHW----TNDLPGSMIQCKLALK-PDGLFIA 172 (325)
T ss_pred -----------------------------------ccccchhhhhhhhhhhh----hccCchHHHHHHHhcC-CCccchh
Confidence 34677999998874444 2578899999999999 9999999
Q ss_pred eccCCCch
Q 045407 276 DLYGGTSS 283 (382)
Q Consensus 276 Dl~gg~s~ 283 (382)
-++||.+.
T Consensus 173 smlggdTL 180 (325)
T KOG2940|consen 173 SMLGGDTL 180 (325)
T ss_pred HHhccccH
Confidence 99988654
No 206
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.42 E-value=0.00048 Score=67.66 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=72.4
Q ss_pred CCcccccCCC--ccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 114 PLHLQEDFCG--TALLSTEWLR-SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 114 p~~LLEl~CG--TG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
-..+||+||| |.-..-++|+ ..+..+|+=||.||-.|+.|+.-. ......+..++++|+++|..
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL----~~~~~g~t~~v~aD~r~p~~--------- 135 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALL----ADNPRGRTAYVQADLRDPEA--------- 135 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHH----TT-TTSEEEEEE--TT-HHH---------
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhh----cCCCCccEEEEeCCCCCHHH---------
Confidence 4579999999 4444556654 367789999999999998888763 22222358999999999972
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
|...-.+ +.+-.-..=+.+.++..+-|+.+.++....++..+++|- ||
T Consensus 136 -iL~~p~~------------------------------~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la-pG 183 (267)
T PF04672_consen 136 -ILAHPEV------------------------------RGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA-PG 183 (267)
T ss_dssp -HHCSHHH------------------------------HCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS--TT
T ss_pred -HhcCHHH------------------------------HhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC-CC
Confidence 1111111 001112234777788888889998999999999999998 99
Q ss_pred cEEEEecc
Q 045407 271 GIFVMDLY 278 (382)
Q Consensus 271 GiFVfDl~ 278 (382)
..+++-..
T Consensus 184 S~L~ish~ 191 (267)
T PF04672_consen 184 SYLAISHA 191 (267)
T ss_dssp -EEEEEEE
T ss_pred ceEEEEec
Confidence 99999655
No 207
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00061 Score=69.84 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=51.6
Q ss_pred CcccccCCCccHhHHHHHHhCCC--------------------------------C-------eEEEEeCCHHHHHHHHH
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR--------------------------------R-------TAVGLDLDLEALEWCME 155 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~--------------------------------~-------tVvGVDLS~emL~~A~e 155 (382)
..|+|..||+|.+.+|-|-.+.+ + ..+|+|+|+.||+.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 47999999999999999988852 1 26799999999999999
Q ss_pred hccccccCCCCcceEEEeccCCCch
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|+.+ +.-...|.|.++|+..+.
T Consensus 273 NA~~---AGv~d~I~f~~~d~~~l~ 294 (381)
T COG0116 273 NARA---AGVGDLIEFKQADATDLK 294 (381)
T ss_pred HHHh---cCCCceEEEEEcchhhCC
Confidence 9765 222347999999998776
No 208
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.37 E-value=0.0016 Score=65.91 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=73.1
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
...++|.|-|+|+++-.++..-+ .|-|++.|+.-+-++..... . .|..+-|||.+-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-----~---gV~~v~gdmfq~-------------- 233 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-----P---GVEHVAGDMFQD-------------- 233 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-----C---Ccceeccccccc--------------
Confidence 45788999999999999999555 59999999999988887741 1 277888998542
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
.|+-|+|..- -.+..+ +.+++++.|++++.+|. |||..
T Consensus 234 ---------------------------------------~P~~daI~mk-WiLhdw-tDedcvkiLknC~~sL~-~~GkI 271 (342)
T KOG3178|consen 234 ---------------------------------------TPKGDAIWMK-WILHDW-TDEDCVKILKNCKKSLP-PGGKI 271 (342)
T ss_pred ---------------------------------------CCCcCeEEEE-eecccC-ChHHHHHHHHHHHHhCC-CCCEE
Confidence 2445655443 233333 45899999999999999 55555
Q ss_pred E-Eecc
Q 045407 274 V-MDLY 278 (382)
Q Consensus 274 V-fDl~ 278 (382)
| .|..
T Consensus 272 iv~E~V 277 (342)
T KOG3178|consen 272 IVVENV 277 (342)
T ss_pred EEEecc
Confidence 4 4764
No 209
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.36 E-value=0.00063 Score=71.67 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=77.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..+||+|||.|.+.+.+|+..|...++|||++...+..|..+... .+..++.++++|+..+..
T Consensus 349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~----~~l~N~~~~~~~~~~~~~------------- 411 (506)
T PRK01544 349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE----QNITNFLLFPNNLDLILN------------- 411 (506)
T ss_pred ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH----cCCCeEEEEcCCHHHHHH-------------
Confidence 345699999999999999999999999999999988887776422 233467788887643320
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhH-----HHHHHHHHHhhccCC
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRAD-----LVLYFKHVLHALSKK 269 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~d-----L~~yFr~V~~~L~~p 269 (382)
.|+...+|.|..++ .-=|..++.. -...++..++.|+ |
T Consensus 412 -----------------------------------~~~~~sv~~i~i~F-PDPWpKkrh~krRl~~~~fl~~~~~~Lk-~ 454 (506)
T PRK01544 412 -----------------------------------DLPNNSLDGIYILF-PDPWIKNKQKKKRIFNKERLKILQDKLK-D 454 (506)
T ss_pred -----------------------------------hcCcccccEEEEEC-CCCCCCCCCccccccCHHHHHHHHHhcC-C
Confidence 02244577766554 4445443322 2356777888998 9
Q ss_pred CcEEEE--ec
Q 045407 270 GGIFVM--DL 277 (382)
Q Consensus 270 GGiFVf--Dl 277 (382)
||.+-| |.
T Consensus 455 gG~i~~~TD~ 464 (506)
T PRK01544 455 NGNLVFASDI 464 (506)
T ss_pred CCEEEEEcCC
Confidence 998888 54
No 210
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.36 E-value=0.0015 Score=68.62 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=49.1
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..+|||++||+|.-|+.+|..- .+..|+++|+|+.-+...+++. .+++ ...|.+++.|.+.+.
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl-~r~G---~~nv~v~~~D~~~~~ 177 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANI-SRCG---VSNVALTHFDGRVFG 177 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH-HHcC---CCeEEEEeCchhhhh
Confidence 3579999999999999998863 3358999999999999888864 4343 346788888876554
No 211
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.32 E-value=0.00047 Score=58.71 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=49.2
Q ss_pred ccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|+|||+|.++..+++.++..+|+++|.++++++.++++... .+..++.+++..+.+-.
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~----n~~~~v~~~~~al~~~~ 61 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL----NNLPNVVLLNAAVGDRD 61 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH----cCCCcEEEEEeeeeCCC
Confidence 7899999999999999999877999999999999999987422 12235888887775433
No 212
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.31 E-value=0.00018 Score=69.46 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=51.6
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+..|+|.|||.|-.++.+|.+|+ .|++||+||.=++.|+.|+.- -|- .+||.|+|||+++.-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaei-YGI--~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEV-YGV--PDRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhcccee-ecC--CceeEEEechHHHHH
Confidence 355788999999999999999998 499999999999888877533 122 249999999997764
No 213
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.0011 Score=62.06 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=50.1
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.++||+|+|||.|+.|-+-||. ..|+.||.|..++...++| ++.++.. .++.++.+|..
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N-~~~l~~~--~~~~~~~~da~ 103 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKEN-LKALGLE--GEARVLRNDAL 103 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHH-HHHhCCc--cceEEEeecHH
Confidence 4799999999999999999998 5999999999999999998 4434422 47888999986
No 214
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.25 E-value=0.00098 Score=58.20 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=47.1
Q ss_pred CCCCcccccCCCccHhHHHHHH----hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 112 RQPLHLQEDFCGTALLSTEWLR----SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar----~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
..+.+|.|+|||.|-||..|+. ..+..+|+|||.++.+++.|.+.... +...-..++.+.++++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 91 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK-LGSDLEKRLSFIQGDI 91 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH-hcchhhccchhhccch
Confidence 4467899999999999999998 13677999999999999999988643 3211113455555544
No 215
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.23 E-value=0.00022 Score=75.16 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=74.5
Q ss_pred ChhhHHHHHHHHHHhh---CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEE---eCCHHHHHHHHHhccccccCCCCc
Q 045407 94 PKGDISYLQKFFLIYV---GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGL---DLDLEALEWCMENNLNKVGADGYS 167 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~---ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGV---DLS~emL~~A~e~~~~kl~~d~~~ 167 (382)
|.|--.|+..+-.+.. .+...+.+||.|||+|.+++.|+.++-- ++.+ |-.+..++.|.++-+.
T Consensus 95 ~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~--t~s~a~~d~~~~qvqfaleRGvp-------- 164 (506)
T PF03141_consen 95 PHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVT--TMSFAPNDEHEAQVQFALERGVP-------- 164 (506)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCce--EEEcccccCCchhhhhhhhcCcc--------
Confidence 3444466665554421 1223567899999999999999999842 2222 4445566777776432
Q ss_pred ceEEEeccC--CCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccch
Q 045407 168 RISLFHGNV--LQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYS 245 (382)
Q Consensus 168 RI~l~~gDV--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S 245 (382)
.+-+-+ ..++ |....||+|=|.--.
T Consensus 165 ---a~~~~~~s~rLP--------------------------------------------------fp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 165 ---AMIGVLGSQRLP--------------------------------------------------FPSNAFDMVHCSRCL 191 (506)
T ss_pred ---hhhhhhcccccc--------------------------------------------------CCccchhhhhccccc
Confidence 111111 1222 335679999777666
Q ss_pred hcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 246 CCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 246 ~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
+.|.... -.+|-.|-+.|+ |||.||.--
T Consensus 192 i~W~~~~---g~~l~evdRvLR-pGGyfv~S~ 219 (506)
T PF03141_consen 192 IPWHPND---GFLLFEVDRVLR-PGGYFVLSG 219 (506)
T ss_pred ccchhcc---cceeehhhhhhc-cCceEEecC
Confidence 6775543 358889999999 999999853
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.21 E-value=0.0012 Score=63.43 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..+.++... ++-.....|+|+|.|+|.+|..|++.+ ..|++|++|+.+.+.-+++.. ...++.++++|+++
T Consensus 17 ~~~~~Iv~~-~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 17 NIADKIVDA-LDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHH-HTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTT
T ss_pred HHHHHHHHh-cCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhc
Confidence 444555543 333335689999999999999999999 479999999999999888742 23589999999998
Q ss_pred chh
Q 045407 179 PLE 181 (382)
Q Consensus 179 ~~~ 181 (382)
...
T Consensus 88 ~~~ 90 (262)
T PF00398_consen 88 WDL 90 (262)
T ss_dssp SCG
T ss_pred ccc
Confidence 874
No 217
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.017 Score=57.12 Aligned_cols=218 Identities=21% Similarity=0.242 Sum_probs=126.7
Q ss_pred HHHHHhhcCChh-----hHHHHHHHHHHhhCCCCCCcccccCCCccH----hHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 85 LLYQQSVQSPKG-----DISYLQKFFLIYVGGRQPLHLQEDFCGTAL----LSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 85 ~LYd~~vq~p~~-----Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~----LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
.|+++...=|+| |++-++.+...-+.--.+..+.|||.|+-. |.-.++.+|+-.+-+-+|+|...|.--.+
T Consensus 45 ~LFe~I~~LPEYYpTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ 124 (321)
T COG4301 45 ELFEQITRLPEYYPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATAT 124 (321)
T ss_pred HHHHHHhccccccCchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHH
Confidence 456666555654 445555554433322226789999999764 45556677777889999999999975443
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
... ..-....|.-+++|...+.- . .+..+
T Consensus 125 ai~---~~y~~l~v~~l~~~~~~~La----------------~--------------------------------~~~~~ 153 (321)
T COG4301 125 AIL---REYPGLEVNALCGDYELALA----------------E--------------------------------LPRGG 153 (321)
T ss_pred HHH---HhCCCCeEeehhhhHHHHHh----------------c--------------------------------ccCCC
Confidence 322 12234567777888644430 0 11234
Q ss_pred ccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE--eccC-------------CCchhhhh---H-hhhcc-CC
Q 045407 236 RDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM--DLYG-------------GTSSEQKL---R-LQRRF-AN 295 (382)
Q Consensus 236 fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf--Dl~g-------------g~s~e~kl---~-~~R~~-~~ 295 (382)
.-++|-.-.|++-|. +.+-..+|..++.+|+ ||-.|++ |+-. |-+.+-++ + ..|.| .|
T Consensus 154 ~Rl~~flGStlGN~t-p~e~~~Fl~~l~~a~~-pGd~~LlGvDl~k~Ae~Le~AYdDp~gVTa~FnlNvLa~lNr~f~~n 231 (321)
T COG4301 154 RRLFVFLGSTLGNLT-PGECAVFLTQLRGALR-PGDYFLLGVDLRKPAERLEAAYDDPQGVTAEFNLNVLAHLNRVFGGN 231 (321)
T ss_pred eEEEEEecccccCCC-hHHHHHHHHHHHhcCC-CcceEEEeccccCHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccC
Confidence 556666667777655 5677889999999999 9999999 5431 11111111 1 12333 23
Q ss_pred eEEE-Eee-cccccccceEEE---------------EEEEEeecccceeeeeeeeeEEecCHHHHHHHHHHcCCcEEEEE
Q 045407 296 FTYV-WEQ-AEFDIIERKTRI---------------SLHFHLQKEQKKLRHAFSYNWRLWSLPEIKDCLEEAGFRSVHFW 358 (382)
Q Consensus 296 ~tyv-Weq-~~fD~~~~~~ri---------------~L~F~~~~~~~~lr~~fsy~~Rlysl~EI~d~LeeAGF~~V~v~ 358 (382)
|..- |+- +-||.....+++ .+++.++.+. .+ .+..-|=|++++|+..|+.+||+-|+.|
T Consensus 232 FD~~dfeh~Avyne~~~~iem~L~a~~~qTVr~g~l~ltv~F~age-~i---LtE~S~Kfslq~irq~laa~gl~~v~~w 307 (321)
T COG4301 232 FDVDDFEHVAVYNEDEGRIEMYLRAKREQTVRLGALDLTVDFAAGE-TI---LTEISRKFSLQAIRQQLAAAGLEPVQKW 307 (321)
T ss_pred CCcchhhhHhhhhhhHHHHHHHhhcCCceEEEecCccceeecCCCc-ee---ehhhhhhCCHHHHHHHHHhcCCeEeeeh
Confidence 3222 321 123332222222 2333333333 11 1222367899999999999999999988
Q ss_pred e
Q 045407 359 L 359 (382)
Q Consensus 359 ~ 359 (382)
-
T Consensus 308 t 308 (321)
T COG4301 308 T 308 (321)
T ss_pred h
Confidence 4
No 218
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.0018 Score=65.41 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=79.6
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHH-------HHHHHhccccccCCCCcceEEEeccCCCchhhhhcc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEAL-------EWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVR 186 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL-------~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~ 186 (382)
+-.||=.|||+|+|+..|+..|+ .+.|-.+|--|| +.|...|.= .=-.|+|+.........++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~-------~IYPfIh~~sn~~~~dDQl- 220 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQF-------TIYPFIHQYSNSLSRDDQL- 220 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcE-------EEEeeeecccccccccccc-
Confidence 44678899999999999999997 599999988776 333333211 1135777776555533332
Q ss_pred cchhhhhhccccccccCccccchhhhhhccccc--c-CCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHH
Q 045407 187 YEPQKLVRNISLEECDNTLETSTIESAVQDNFT--A-SSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVL 263 (382)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~ 263 (382)
|-|+..... +..++...++- . -+=.+..+..-..+.+|+|+.. +++.+-..+..|+..++
T Consensus 221 -------rpi~~PD~~------p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc----fFIDTa~NileYi~tI~ 283 (369)
T KOG2798|consen 221 -------RPISIPDIH------PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC----FFIDTAHNILEYIDTIY 283 (369)
T ss_pred -------ccccCcccc------ccccCCCCCCccccccceeEEecCcCCCCccceEEEE----EEeechHHHHHHHHHHH
Confidence 222221000 00000000000 0 0001111122223569998865 46778889999999999
Q ss_pred hhccCCCcEEEE
Q 045407 264 HALSKKGGIFVM 275 (382)
Q Consensus 264 ~~L~~pGGiFVf 275 (382)
..|+ |||+.|.
T Consensus 284 ~iLk-~GGvWiN 294 (369)
T KOG2798|consen 284 KILK-PGGVWIN 294 (369)
T ss_pred Hhcc-CCcEEEe
Confidence 9999 9999886
No 219
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0033 Score=60.40 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=47.9
Q ss_pred CcccccCCCccHhHHHHHHh-CCC-CeEEEEeCCHHHHHHHHHhcccccc----CC--CCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSR-RTAVGLDLDLEALEWCMENNLNKVG----AD--GYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~-~tVvGVDLS~emL~~A~e~~~~kl~----~d--~~~RI~l~~gDV~~~~ 180 (382)
...||+|.|||-|++.+++. |.. ..++|||+-++.++.+.+|...-+. .. ...+++++.||.+...
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 35899999999999998842 222 2359999999999999987543221 01 1346889999987765
No 220
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.06 E-value=0.0024 Score=62.77 Aligned_cols=94 Identities=11% Similarity=0.101 Sum_probs=67.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
...|||+|.|-|..+..++..-. +|.+-++|+-|...-+++ |+ .++ +..+..
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k--------g~---~vl--~~~~w~------------- 146 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK--------GF---TVL--DIDDWQ------------- 146 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC--------CC---eEE--ehhhhh-------------
Confidence 45799999999999999988764 699999999995433333 22 222 222211
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
- ...+||+|.|+| -|..-++-...++.++++|+ |+|++
T Consensus 147 ----~---------------------------------~~~~fDvIscLN----vLDRc~~P~~LL~~i~~~l~-p~G~l 184 (265)
T PF05219_consen 147 ----Q---------------------------------TDFKFDVISCLN----VLDRCDRPLTLLRDIRRALK-PNGRL 184 (265)
T ss_pred ----c---------------------------------cCCceEEEeehh----hhhccCCHHHHHHHHHHHhC-CCCEE
Confidence 0 034699999998 33333556778899999999 89999
Q ss_pred EEec
Q 045407 274 VMDL 277 (382)
Q Consensus 274 VfDl 277 (382)
|+=+
T Consensus 185 ilAv 188 (265)
T PF05219_consen 185 ILAV 188 (265)
T ss_pred EEEE
Confidence 9965
No 221
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0076 Score=57.27 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=39.8
Q ss_pred CcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|+|||+-+|..|...++.... ..|+|+|+.|=-+ + ..|.++++|++.++
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------~-----~~V~~iq~d~~~~~ 98 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------I-----PGVIFLQGDITDED 98 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------C-----CCceEEeeeccCcc
Confidence 46899999999999988877643 2399999999111 1 13999999999987
No 222
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.93 E-value=0.0076 Score=56.36 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=82.7
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRR-TAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~-tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...+-|||+|-|||-++-.++++|.+- .++.+..|++....-+++. ..+.++.||.-++.-
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~--------- 108 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRT--------- 108 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHH---------
Confidence 334579999999999999999998643 5789999999998887775 235689998755540
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
+-+.+..+.||.|+|..=-.+. ...-=++.+..+...|. .|
T Consensus 109 ------------------------------------~l~e~~gq~~D~viS~lPll~~--P~~~~iaile~~~~rl~-~g 149 (194)
T COG3963 109 ------------------------------------TLGEHKGQFFDSVISGLPLLNF--PMHRRIAILESLLYRLP-AG 149 (194)
T ss_pred ------------------------------------HHhhcCCCeeeeEEeccccccC--cHHHHHHHHHHHHHhcC-CC
Confidence 0111335679999997755553 22445788999999999 89
Q ss_pred cEEEEeccC
Q 045407 271 GIFVMDLYG 279 (382)
Q Consensus 271 GiFVfDl~g 279 (382)
|.||-=-||
T Consensus 150 g~lvqftYg 158 (194)
T COG3963 150 GPLVQFTYG 158 (194)
T ss_pred CeEEEEEec
Confidence 999986665
No 223
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.0076 Score=56.99 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=48.3
Q ss_pred CCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
.++.|..++|+|||+|-.++-|++. +++....+.||+|.+++.-++-+.. ...++..++.|+.
T Consensus 40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-----n~~~~~~V~tdl~ 103 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-----NRVHIDVVRTDLL 103 (209)
T ss_pred hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-----cCCccceeehhHH
Confidence 4556888999999999999988764 5667789999999999986665422 2235778887753
No 224
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.84 E-value=0.0012 Score=54.04 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=43.2
Q ss_pred cccCCCccHhHHHHHHhCCC---CeEEEEeCCH---HHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhh
Q 045407 118 QEDFCGTALLSTEWLRSDSR---RTAVGLDLDL---EALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQK 191 (382)
Q Consensus 118 LEl~CGTG~LS~elar~g~~---~tVvGVDLS~---emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~ 191 (382)
+|+||..|.-+..|++.-.. .++++||..+ ..-++.++... ..++.++++|..+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~-------~~~~~~~~g~s~~~l~---------- 63 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL-------SDRVEFIQGDSPDFLP---------- 63 (106)
T ss_dssp --------------------------EEEESS------------GGG--------BTEEEEES-THHHHH----------
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC-------CCeEEEEEcCcHHHHH----------
Confidence 58998888887777764322 2699999999 44444443221 1379999999744320
Q ss_pred hhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCc
Q 045407 192 LVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGG 271 (382)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGG 271 (382)
. + ..+++|+|..=- -|+.+.....|+.+...|+ |||
T Consensus 64 ---~--~---------------------------------~~~~~dli~iDg-----~H~~~~~~~dl~~~~~~l~-~gg 99 (106)
T PF13578_consen 64 ---S--L---------------------------------PDGPIDLIFIDG-----DHSYEAVLRDLENALPRLA-PGG 99 (106)
T ss_dssp ---H--H---------------------------------HH--EEEEEEES--------HHHHHHHHHHHGGGEE-EEE
T ss_pred ---H--c---------------------------------CCCCEEEEEECC-----CCCHHHHHHHHHHHHHHcC-CCe
Confidence 0 1 024677775533 1445788999999999999 999
Q ss_pred EEEEe
Q 045407 272 IFVMD 276 (382)
Q Consensus 272 iFVfD 276 (382)
+.|||
T Consensus 100 viv~d 104 (106)
T PF13578_consen 100 VIVFD 104 (106)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 225
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.81 E-value=0.0031 Score=66.16 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=45.8
Q ss_pred ChhhHHHHHHHHHHhhCC---CCCCcccccCCCccHhHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHhc
Q 045407 94 PKGDISYLQKFFLIYVGG---RQPLHLQEDFCGTALLSTEWLRSDS--------RRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~gg---r~p~~LLEl~CGTG~LS~elar~g~--------~~tVvGVDLS~emL~~A~e~~ 157 (382)
|..=+.++.+.+....+. ..+.+|+|.+||||.+.+.+++... ...++|+|+|+.++.+|+.+.
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 344445666555332221 1345799999999999999887653 247899999999999999874
No 226
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0021 Score=68.07 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=58.9
Q ss_pred HHHHHHhhcCChhhH--HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccc
Q 045407 84 FLLYQQSVQSPKGDI--SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKV 161 (382)
Q Consensus 84 ~~LYd~~vq~p~~Di--~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl 161 (382)
...+|-. .+.+++ +|+.+.... ..-..++|++||||.++..+++.-. .|+||.+|+++++-|+.|+..
T Consensus 358 ~AFFQ~N--t~~aevLys~i~e~~~l----~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~-- 427 (534)
T KOG2187|consen 358 GAFFQTN--TSAAEVLYSTIGEWAGL----PADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQI-- 427 (534)
T ss_pred chhhccC--cHHHHHHHHHHHHHhCC----CCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchh--
Confidence 3444433 344455 555555433 2225789999999999999998875 699999999999999998743
Q ss_pred cCCCCcceEEEecc
Q 045407 162 GADGYSRISLFHGN 175 (382)
Q Consensus 162 ~~d~~~RI~l~~gD 175 (382)
.+-++..|++|-
T Consensus 428 --NgisNa~Fi~gq 439 (534)
T KOG2187|consen 428 --NGISNATFIVGQ 439 (534)
T ss_pred --cCccceeeeecc
Confidence 456789999993
No 227
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.68 E-value=0.0055 Score=62.19 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=51.5
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|+|+|+|-|-+|+..|+.|.. +|+++||.|.++...++|..- -+ -..+|..++||.++..
T Consensus 190 E~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~L-N~--v~~~v~~i~gD~rev~ 251 (341)
T COG2520 190 ETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRL-NK--VEGRVEPILGDAREVA 251 (341)
T ss_pred CEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHh-cC--ccceeeEEeccHHHhh
Confidence 37999999999999999999975 499999999999999988532 11 1236999999998876
No 228
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.60 E-value=0.009 Score=58.19 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=34.4
Q ss_pred CCCCCcccccCCCccHhHHHHHHhC---CCCeEEEEeCCHHHHHHHHHhc
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSD---SRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g---~~~tVvGVDLS~emL~~A~e~~ 157 (382)
.-.|.+|||+|||+|. ..||-.. .-.++++||.|+.|++.|+.-.
T Consensus 31 ~f~P~~vLD~GsGpGt--a~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGT--ALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CCCCceEEEecCChHH--HHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 4458899999999995 4455331 2247999999999999988754
No 229
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.50 E-value=0.005 Score=59.79 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=45.6
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++|||||.|-++..|.+.|.+ .|+++|+++.+++..+.|... .++++|+.++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~-~v~a~e~~~~a~~~~~~N~~~----------~~~~~Di~~~~ 55 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE-IVAANEIDKSAAETYEANFPN----------KLIEGDITKID 55 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE-EEEEEeCCHHHHHHHHHhCCC----------CCccCccccCc
Confidence 4789999999999999999975 789999999999998887521 16788988776
No 230
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.49 E-value=0.017 Score=61.04 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=80.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
.+|-+|||--.|+..+-+.|++ .++-+|+|+..++....++. ....-+.+...||+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~-dI~~iD~S~V~V~~m~~~~~-----~~~~~~~~~~~d~~~l~--------------- 109 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE-DITNIDSSSVVVAAMQVRNA-----KERPEMQMVEMDMDQLV--------------- 109 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC-CceeccccHHHHHHHHhccc-----cCCcceEEEEecchhcc---------------
Confidence 6899999999999999999995 99999999999988877762 23345888899988776
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChh------HHHHHHHHHHhhccCC
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRA------DLVLYFKHVLHALSKK 269 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~------dL~~yFr~V~~~L~~p 269 (382)
|..+.||+|+.=.+-=.-+.+.. -+-..+..|.+.|+ +
T Consensus 110 -----------------------------------fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~-~ 153 (482)
T KOG2352|consen 110 -----------------------------------FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLA-P 153 (482)
T ss_pred -----------------------------------CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhc-c
Confidence 23566777776554433333333 34478899999999 9
Q ss_pred CcEEEEec
Q 045407 270 GGIFVMDL 277 (382)
Q Consensus 270 GGiFVfDl 277 (382)
||+|+.=.
T Consensus 154 ~gk~~svt 161 (482)
T KOG2352|consen 154 GGKYISVT 161 (482)
T ss_pred CCEEEEEE
Confidence 99988733
No 231
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.49 E-value=0.022 Score=56.28 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=71.0
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHH--hCCCCeEEEEeCCHHHHHHHHHhcccc
Q 045407 83 KFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLR--SDSRRTAVGLDLDLEALEWCMENNLNK 160 (382)
Q Consensus 83 ~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar--~g~~~tVvGVDLS~emL~~A~e~~~~k 160 (382)
|+.-|.+++ +-|... +... .+..|.+|+=+|||+==+|.-+.. .+....|+++|+|+++++.|++-..+.
T Consensus 98 Yy~nY~~L~---~lE~~~----l~~~-~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~ 169 (276)
T PF03059_consen 98 YYPNYEKLV---RLEYAA----LRIH-AGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD 169 (276)
T ss_dssp THHHHHHHH---HHHHH-----HTT---TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--
T ss_pred cHHHHHHHH---HHHHHH----Hhhc-CCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc
Confidence 667777773 222222 2222 344578899999996655554443 455567999999999999998753311
Q ss_pred ccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEE
Q 045407 161 VGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIIC 240 (382)
Q Consensus 161 l~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~ 240 (382)
++ -..+|.|..+|+.+... .+..||+|+
T Consensus 170 ~~--L~~~m~f~~~d~~~~~~--------------------------------------------------dl~~~DvV~ 197 (276)
T PF03059_consen 170 LG--LSKRMSFITADVLDVTY--------------------------------------------------DLKEYDVVF 197 (276)
T ss_dssp -H--H-SSEEEEES-GGGG-G--------------------------------------------------G----SEEE
T ss_pred cc--ccCCeEEEecchhcccc--------------------------------------------------ccccCCEEE
Confidence 11 13489999999865541 146799886
Q ss_pred EccchhcccCChhHHHHHHHHHHhhccCCCcEEEEe
Q 045407 241 AFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMD 276 (382)
Q Consensus 241 afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfD 276 (382)
-.. +-- .+.++=...|.++.++++ ||.+.++=
T Consensus 198 lAa--lVg-~~~e~K~~Il~~l~~~m~-~ga~l~~R 229 (276)
T PF03059_consen 198 LAA--LVG-MDAEPKEEILEHLAKHMA-PGARLVVR 229 (276)
T ss_dssp E-T--T-S-----SHHHHHHHHHHHS--TTSEEEEE
T ss_pred Ehh--hcc-cccchHHHHHHHHHhhCC-CCcEEEEe
Confidence 543 222 233466899999999999 99999985
No 232
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.12 E-value=0.014 Score=59.68 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=75.7
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
.+++++||-|-.+.+.+.-.. ..++|+|+++.-+..+...+.... -.....++.+|..+.+
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~-~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~~~~~~~~~--------------- 173 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK-AGVVGLDNNAYEAFRANELAKKAY---LDNKCNFVVADFGKMP--------------- 173 (364)
T ss_pred cccccCcCcCchhHHHHHhcc-CCccCCCcCHHHHHHHHHHHHHHH---hhhhcceehhhhhcCC---------------
Confidence 378999999999999887775 479999999999988888765421 1123334555554444
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
|....||.|-++ ++.||..+ +...++.++++|+ |||+|+.
T Consensus 174 -----------------------------------fedn~fd~v~~l-d~~~~~~~---~~~~y~Ei~rv~k-pGG~~i~ 213 (364)
T KOG1269|consen 174 -----------------------------------FEDNTFDGVRFL-EVVCHAPD---LEKVYAEIYRVLK-PGGLFIV 213 (364)
T ss_pred -----------------------------------CCccccCcEEEE-eecccCCc---HHHHHHHHhcccC-CCceEEe
Confidence 335678988766 68898764 5778999999998 9999997
No 233
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.09 E-value=0.015 Score=52.21 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
..++++++++.. ....|||.|||+|..+..-.+.| ++.+|+|++++..+.|.+
T Consensus 179 ~l~~~lI~~~t~--~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTN--PGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhc--cceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 334444444331 13469999999999988888888 579999999999998875
No 234
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.02 E-value=0.015 Score=55.85 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=33.9
Q ss_pred CCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 233 LPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 233 ~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
.+.||+|++.. .+||+.+..+=-..++++++.|+ ++|.
T Consensus 102 ~e~FdvIs~SL-VLNfVP~p~~RG~Ml~r~~~fL~-~~g~ 139 (219)
T PF11968_consen 102 SEKFDVISLSL-VLNFVPDPKQRGEMLRRAHKFLK-PPGL 139 (219)
T ss_pred ccceeEEEEEE-EEeeCCCHHHHHHHHHHHHHHhC-CCCc
Confidence 46799998876 99999999999999999999999 6776
No 235
>PRK10742 putative methyltransferase; Provisional
Probab=95.96 E-value=0.017 Score=56.43 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=47.5
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcccc-----ccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNK-----VGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~k-----l~~d~~~RI~l~~gDV~~~~ 180 (382)
+|||+++|+|+.+.+++.+|. +|++|+-|+.+..+.+++.... ++..-..||+++++|..+..
T Consensus 91 ~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence 799999999999999999996 5999999998877766553220 01100147999999986654
No 236
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.90 E-value=0.018 Score=55.02 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=74.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..+-|||.|||.||.--+..-- +|+++.+||---++|.+|. ++ .+...++.+.||.++..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~--~v--~g~~n~evv~gDA~~y~-------------- 93 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENL--HV--PGDVNWEVVVGDARDYD-------------- 93 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcC--CC--CCCcceEEEeccccccc--------------
Confidence 3578999999999988777754 6999999999888888873 22 34568999999998776
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE-ccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA-FNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a-fn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
....|+|+| +.+..- . .+..+.+++.|...|+ ..|..
T Consensus 94 --------------------------------------fe~ADvvicEmlDTaL--i-~E~qVpV~n~vleFLr-~d~ti 131 (252)
T COG4076 94 --------------------------------------FENADVVICEMLDTAL--I-EEKQVPVINAVLEFLR-YDPTI 131 (252)
T ss_pred --------------------------------------ccccceeHHHHhhHHh--h-cccccHHHHHHHHHhh-cCCcc
Confidence 244577765 333321 2 2456889999999999 77776
Q ss_pred EE
Q 045407 274 VM 275 (382)
Q Consensus 274 Vf 275 (382)
|=
T Consensus 132 iP 133 (252)
T COG4076 132 IP 133 (252)
T ss_pred cc
Confidence 64
No 237
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.77 E-value=0.043 Score=54.98 Aligned_cols=61 Identities=20% Similarity=0.138 Sum_probs=50.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|.=||.|-+|..+++.-+..+|+|+|.|+++++.|++.... -..|+.++++|-.++.
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~-----~~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD-----FEGRVVLIHDNFANFF 82 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh-----cCCcEEEEeCCHHHHH
Confidence 468899999999999999885447999999999999999987421 1248999999987765
No 238
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.42 E-value=0.073 Score=50.70 Aligned_cols=62 Identities=19% Similarity=0.379 Sum_probs=32.0
Q ss_pred CCCcccccCC---CccHhHHHHHH-hCCCCeEEEEeCCHHHHHHH-HHhccccccCCCCcceEEEeccCCCch
Q 045407 113 QPLHLQEDFC---GTALLSTEWLR-SDSRRTAVGLDLDLEALEWC-MENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 113 ~p~~LLEl~C---GTG~LS~elar-~g~~~tVvGVDLS~emL~~A-~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|..|+|+|- |+..+.+.+++ .|..++|+|||++....+.. .+.+ .-..||.+++||-.++.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~h------p~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESH------PMSPRITFIQGDSIDPE 98 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhc------cccCceEEEECCCCCHH
Confidence 3889999986 44444444333 33667999999987555321 1111 11359999999988887
No 239
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.41 E-value=0.0076 Score=52.26 Aligned_cols=42 Identities=21% Similarity=0.477 Sum_probs=32.7
Q ss_pred CccEEEEccchhcccC---ChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 235 ARDIICAFNYSCCCLH---KRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 235 ~fDiV~afn~S~~yL~---~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
+||+|+||.-+-| +| -.+.|++.|+++++.|+ |||+||+.--
T Consensus 1 ~yDvilclSVtkW-IHLn~GD~Gl~~~f~~~~~~L~-pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKW-IHLNWGDEGLKRFFRRIYSLLR-PGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHH-HHHHHHHHHHHHHHHHHHHHEE-EEEEEEEE--
T ss_pred CccEEEEEEeeEE-EEecCcCHHHHHHHHHHHHhhC-CCCEEEEeCC
Confidence 4899999975543 44 45789999999999999 9999999754
No 240
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.23 E-value=0.024 Score=56.53 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=90.1
Q ss_pred chHHHHHHhhcCChhhH----HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 82 SKFLLYQQSVQSPKGDI----SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 82 ~~~~LYd~~vq~p~~Di----~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
..|.+|+..+-.-+.+. .-+..|.....-| ..+||.|||-|..... . |.--++|.|++...+..|+..+
T Consensus 13 yVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~g---sv~~d~gCGngky~~~---~-p~~~~ig~D~c~~l~~~ak~~~ 85 (293)
T KOG1331|consen 13 YVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTG---SVGLDVGCGNGKYLGV---N-PLCLIIGCDLCTGLLGGAKRSG 85 (293)
T ss_pred HhHHHHHHhhhhccccccCccHHHHHHHhccCCc---ceeeecccCCcccCcC---C-CcceeeecchhhhhccccccCC
Confidence 35778998875533333 2334444433323 3589999999976422 1 2235999999999998887764
Q ss_pred cccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCcc
Q 045407 158 LNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARD 237 (382)
Q Consensus 158 ~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 237 (382)
. ..+..+|++..+ +..+.||
T Consensus 86 ~----------~~~~~ad~l~~p--------------------------------------------------~~~~s~d 105 (293)
T KOG1331|consen 86 G----------DNVCRADALKLP--------------------------------------------------FREESFD 105 (293)
T ss_pred C----------ceeehhhhhcCC--------------------------------------------------CCCCccc
Confidence 1 146778988777 2357799
Q ss_pred EEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 238 IICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 238 iV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
++++.- ++-+|.++.-=..+++++.+.|+ |||--++=++
T Consensus 106 ~~lsia-vihhlsT~~RR~~~l~e~~r~lr-pgg~~lvyvw 144 (293)
T KOG1331|consen 106 AALSIA-VIHHLSTRERRERALEELLRVLR-PGGNALVYVW 144 (293)
T ss_pred cchhhh-hhhhhhhHHHHHHHHHHHHHHhc-CCCceEEEEe
Confidence 988875 66678888888999999999999 9998666554
No 241
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.04 E-value=0.11 Score=51.63 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=43.2
Q ss_pred ccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|+|||||-|-++.-|-+.|.+ .|.++|+++.+.+.-+.|.. . .++++|+.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~-~~~a~e~~~~a~~ty~~N~~---------~-~~~~~Di~~~~ 53 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK-CVFASEIDKYAQKTYEANFG---------N-KVPFGDITKIS 53 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe-EEEEEeCCHHHHHHHHHhCC---------C-CCCccChhhhh
Confidence 479999999999999999975 67789999999998888751 1 34678887765
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.01 E-value=0.079 Score=54.24 Aligned_cols=51 Identities=4% Similarity=0.055 Sum_probs=39.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
..++|+||+||-.|-.|+++|. .|+|||..+ |++.... + .+|..+++|.-.
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~--l~~~L~~-------~--~~V~h~~~d~fr 263 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP--MAQSLMD-------T--GQVEHLRADGFK 263 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC--EEEEEechh--cCHhhhC-------C--CCEEEEeccCcc
Confidence 3689999999999999999996 799999776 4332221 1 478888888633
No 243
>PRK11524 putative methyltransferase; Provisional
Probab=94.90 E-value=0.072 Score=51.87 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
.-++++++.+. .....|||.|||+|..++.-.+.| +..+|+||+++-.+.|+++.
T Consensus 196 ~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 196 ALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHH
Confidence 44555555543 112369999999999888877777 57999999999999999984
No 244
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.79 E-value=0.16 Score=52.79 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cc--cCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KV--GADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl--~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
..++|=+|-|-|+-..+++|.=--.+++=|||||.|++.++.+..- ++ ++-...|+..+..|.-++..
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr--------- 360 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR--------- 360 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH---------
Confidence 3578899999999999998875245899999999999999854221 11 11124578888877644431
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEE-----ccchhcccCChhHHHHHHHHHHhh
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICA-----FNYSCCCLHKRADLVLYFKHVLHA 265 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~a-----fn~S~~yL~~r~dL~~yFr~V~~~ 265 (382)
- ....||.|+. -|.|+.-|-+ +.+++-+.++
T Consensus 361 -------~---------------------------------a~~~fD~vIVDl~DP~tps~~rlYS----~eFY~ll~~~ 396 (508)
T COG4262 361 -------T---------------------------------AADMFDVVIVDLPDPSTPSIGRLYS----VEFYRLLSRH 396 (508)
T ss_pred -------h---------------------------------hcccccEEEEeCCCCCCcchhhhhh----HHHHHHHHHh
Confidence 0 1346776664 3455554433 5678899999
Q ss_pred ccCCCcEEEEec
Q 045407 266 LSKKGGIFVMDL 277 (382)
Q Consensus 266 L~~pGGiFVfDl 277 (382)
|+ ++|++|.--
T Consensus 397 l~-e~Gl~VvQa 407 (508)
T COG4262 397 LA-ETGLMVVQA 407 (508)
T ss_pred cC-cCceEEEec
Confidence 99 999999954
No 245
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.66 E-value=0.13 Score=46.32 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=59.6
Q ss_pred eEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhcccc
Q 045407 139 TAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNF 218 (382)
Q Consensus 139 tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (382)
+|.|.|+=+++|+.++++..+... ..|+.|++..=.++..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~---~~~v~li~~sHe~l~~------------------------------------- 40 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL---EDRVTLILDSHENLDE------------------------------------- 40 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGG-------------------------------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC---CCcEEEEECCHHHHHh-------------------------------------
Confidence 499999999999999998654211 2389999976544431
Q ss_pred ccCCCCCcCccCCCCC-CccEEEEccchhcccC--------ChhHHHHHHHHHHhhccCCCcEEEEeccCCCch
Q 045407 219 TASSGDNCSKQKSSLP-ARDIICAFNYSCCCLH--------KRADLVLYFKHVLHALSKKGGIFVMDLYGGTSS 283 (382)
Q Consensus 219 ~~~~~~~~~~~~~~~~-~fDiV~afn~S~~yL~--------~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~ 283 (382)
+..+ ++|+|+ |-++||. ..+.-+..++.+...|+ |||++++=+|.|.+-
T Consensus 41 ------------~i~~~~v~~~i---FNLGYLPggDk~i~T~~~TTl~Al~~al~lL~-~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 41 ------------YIPEGPVDAAI---FNLGYLPGGDKSITTKPETTLKALEAALELLK-PGGIITIVVYPGHPG 98 (140)
T ss_dssp ------------T--S--EEEEE---EEESB-CTS-TTSB--HHHHHHHHHHHHHHEE-EEEEEEEEE--STCH
T ss_pred ------------hCccCCcCEEE---EECCcCCCCCCCCCcCcHHHHHHHHHHHHhhc-cCCEEEEEEeCCCCC
Confidence 1122 466643 4567875 45677889999999999 999999999987763
No 246
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.66 E-value=0.046 Score=51.96 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=45.7
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++|||||-|-++.-|.+.|.+ .|.++|+++.+.+.-+.|. . ....+|+.+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~-~~~a~e~~~~a~~~y~~N~---------~--~~~~~Di~~~~ 54 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFE-VVWAVEIDPDACETYKANF---------P--EVICGDITEID 54 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEE-EEEEEESSHHHHHHHHHHH---------T--EEEESHGGGCH
T ss_pred cEEEEccCccHHHHHHHhcCcE-EEEEeecCHHHHHhhhhcc---------c--ccccccccccc
Confidence 3689999999999999999975 8999999999999888875 1 67889998887
No 247
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.65 E-value=0.055 Score=47.14 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCC
Q 045407 96 GDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLD 146 (382)
Q Consensus 96 ~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS 146 (382)
+=++||..++..--+...+..+.|+|||.|+|.--|.+-|+ .=.|+|+=
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 34589888886533333466788999999999999999996 47888863
No 248
>PRK13699 putative methylase; Provisional
Probab=94.54 E-value=0.1 Score=49.65 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=35.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
..|||.|||+|..+..-.+.| +..+|+||+++..+.|.++.
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHH
Confidence 369999999999888877777 47999999999999998874
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.36 E-value=0.27 Score=48.31 Aligned_cols=93 Identities=11% Similarity=0.030 Sum_probs=65.1
Q ss_pred CchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhccc
Q 045407 81 PSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDS-RRTAVGLDLDLEALEWCMENNLN 159 (382)
Q Consensus 81 p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~-~~tVvGVDLS~emL~~A~e~~~~ 159 (382)
......|..=---.+...+.+.-..+.-.. ...|||++++.|.=++.++..-. ...++++|+++.-|..-+++. .
T Consensus 56 i~~l~~~~~G~~~vQd~sS~l~~~~L~~~~---~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~-~ 131 (283)
T PF01189_consen 56 ICSLPEFKNGLFYVQDESSQLVALALDPQP---GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENL-K 131 (283)
T ss_dssp GGGSHHHHTTSEEEHHHHHHHHHHHHTTTT---TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHH-H
T ss_pred hhhchhhhCCcEEecccccccccccccccc---cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHH-H
Confidence 345556665544455666776665553222 24699999999999988888765 678999999999999887764 3
Q ss_pred cccCCCCcceEEEeccCCCch
Q 045407 160 KVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 160 kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++ ...+..++.|.+.+.
T Consensus 132 r~g---~~~v~~~~~D~~~~~ 149 (283)
T PF01189_consen 132 RLG---VFNVIVINADARKLD 149 (283)
T ss_dssp HTT----SSEEEEESHHHHHH
T ss_pred hcC---CceEEEEeecccccc
Confidence 343 346788878877663
No 250
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.18 E-value=0.17 Score=50.91 Aligned_cols=61 Identities=25% Similarity=0.132 Sum_probs=47.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|.=-|.|-||..+++..+..+|+|+|-|++||+.|+++... -..|+.++++|..++.
T Consensus 22 g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-----~~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 22 GIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-----FDDRFIFIHGNFSNLD 82 (310)
T ss_dssp -EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-----CCTTEEEEES-GGGHH
T ss_pred ceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-----ccceEEEEeccHHHHH
Confidence 468899999999999999987778999999999999999887422 2359999999988876
No 251
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.78 E-value=0.47 Score=46.48 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=74.7
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe-ccCCCchhhhhcccchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH-GNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~-gDV~~~~~~~~~~~~~~~~~ 193 (382)
..+||+|..||-++--++++|.. .|+|||..-.-|.|-.++. .||..++ -|++.+...
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk-~VyavDVG~~Ql~~kLR~d---------~rV~~~E~tN~r~l~~~----------- 139 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAK-HVYAVDVGYGQLHWKLRND---------PRVIVLERTNVRYLTPE----------- 139 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCc-EEEEEEccCCccCHhHhcC---------CcEEEEecCChhhCCHH-----------
Confidence 36999999999999999999985 9999999999999988774 3655555 477766511
Q ss_pred hccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEE
Q 045407 194 RNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIF 273 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiF 273 (382)
+| .+.+|+|+|=- ||- .|...|-.+...|+ ++|.+
T Consensus 140 ------------------------------------~~-~~~~d~~v~Dv-SFI------SL~~iLp~l~~l~~-~~~~~ 174 (245)
T COG1189 140 ------------------------------------DF-TEKPDLIVIDV-SFI------SLKLILPALLLLLK-DGGDL 174 (245)
T ss_pred ------------------------------------Hc-ccCCCeEEEEe-ehh------hHHHHHHHHHHhcC-CCceE
Confidence 11 23678887754 544 67888888899998 88888
Q ss_pred EEecc
Q 045407 274 VMDLY 278 (382)
Q Consensus 274 VfDl~ 278 (382)
|.=+-
T Consensus 175 v~LvK 179 (245)
T COG1189 175 VLLVK 179 (245)
T ss_pred EEEec
Confidence 87554
No 252
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=93.77 E-value=0.14 Score=49.07 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=52.9
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 94 PKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 94 p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
=.+.+.|+...=..+.|+ +|||+|.|+|+-++.-++.|.. .|+..|++|..++-.+-|. +..+..|.+.+
T Consensus 64 G~~lAR~i~~~PetVrgk----rVLd~gagsgLvaIAaa~aGA~-~v~a~d~~P~~~~ai~lNa-----~angv~i~~~~ 133 (218)
T COG3897 64 GQVLARYIDDHPETVRGK----RVLDLGAGSGLVAIAAARAGAA-EVVAADIDPWLEQAIRLNA-----AANGVSILFTH 133 (218)
T ss_pred hHHHHHHHhcCccccccc----eeeecccccChHHHHHHHhhhH-HHHhcCCChHHHHHhhcch-----hhccceeEEee
Confidence 455666766655543333 5999999999999999999985 8999999986665444332 22346788888
Q ss_pred ccCC
Q 045407 174 GNVL 177 (382)
Q Consensus 174 gDV~ 177 (382)
.|..
T Consensus 134 ~d~~ 137 (218)
T COG3897 134 ADLI 137 (218)
T ss_pred cccc
Confidence 8864
No 253
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.74 E-value=0.57 Score=47.56 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=93.5
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCC--CeEEEEeCCHHHHHHHHHhccccccC
Q 045407 86 LYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSR--RTAVGLDLDLEALEWCMENNLNKVGA 163 (382)
Q Consensus 86 LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~--~tVvGVDLS~emL~~A~e~~~~kl~~ 163 (382)
.|..=.-.++...+.+--.++. .....+|||++.+.|-=|+.+|..... ..|+++|+|+.=|..-+++. ..++.
T Consensus 132 ~~~~G~~~vQd~sS~l~a~~L~---p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl-~RlG~ 207 (355)
T COG0144 132 EFAEGLIYVQDEASQLPALVLD---PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENL-KRLGV 207 (355)
T ss_pred hhhceEEEEcCHHHHHHHHHcC---CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHH-HHcCC
Confidence 5555444556666666665543 122257999999999999999998864 45799999999998877764 33433
Q ss_pred CCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEcc
Q 045407 164 DGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFN 243 (382)
Q Consensus 164 d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn 243 (382)
..+.+++.|-+.+... .+... .-+-.-.|+++|....--..+|+--...
T Consensus 208 ---~nv~~~~~d~~~~~~~-----~~~~~-----------------------~fD~iLlDaPCSg~G~irr~Pd~~~~~~ 256 (355)
T COG0144 208 ---RNVIVVNKDARRLAEL-----LPGGE-----------------------KFDRILLDAPCSGTGVIRRDPDVKWRRT 256 (355)
T ss_pred ---CceEEEeccccccccc-----ccccC-----------------------cCcEEEECCCCCCCcccccCccccccCC
Confidence 3477888886654310 00000 0011123556665555444455544333
Q ss_pred chhcccCChhH-HHHHHHHHHhhccCCCcEEEEec
Q 045407 244 YSCCCLHKRAD-LVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 244 ~S~~yL~~r~d-L~~yFr~V~~~L~~pGGiFVfDl 277 (382)
-. -+..... -...++++++.|+ |||++|-..
T Consensus 257 ~~--~i~~l~~lQ~~iL~~a~~~lk-~GG~LVYST 288 (355)
T COG0144 257 PE--DIAELAKLQKEILAAALKLLK-PGGVLVYST 288 (355)
T ss_pred HH--HHHHHHHHHHHHHHHHHHhcC-CCCEEEEEc
Confidence 22 1111222 2456889999998 999999853
No 254
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.67 E-value=0.081 Score=51.33 Aligned_cols=54 Identities=31% Similarity=0.506 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCCCcccccCCCccHhHHH--HHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 102 QKFFLIYVGGRQPLHLQEDFCGTALLSTE--WLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 102 ~~~f~~y~ggr~p~~LLEl~CGTG~LS~e--lar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
|+.|. +..+..|..|-|.+||.|-|.+- |+.+..=..|+|-|+|+++|++|++|
T Consensus 41 qR~l~-~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 41 QRALH-YLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp HHHHC-TSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred HHHHH-hhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 44443 45567799999999999988654 45555445799999999999999987
No 255
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.25 E-value=0.38 Score=47.91 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=74.9
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVR 194 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~ 194 (382)
..++|||||-|-++.-|.+.|.+ -+.++|+++.+++.=+.|.. .-.+++.|+.+......
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~-~~~a~Eid~~a~~ty~~n~~---------~~~~~~~di~~~~~~~~---------- 63 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFE-IVFANEIDPPAVATYKANFP---------HGDIILGDIKELDGEAL---------- 63 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCe-EEEEEecCHHHHHHHHHhCC---------CCceeechHhhcChhhc----------
Confidence 35789999999999999999985 79999999999988777652 13466778776652110
Q ss_pred ccccccccCccccchhhhhhccccccCCCCCcCccCCCCC-CccEEEEcc----chh-----cccCChhHHHHHHHHHHh
Q 045407 195 NISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLP-ARDIICAFN----YSC-----CCLHKRADLVLYFKHVLH 264 (382)
Q Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fDiV~afn----~S~-----~yL~~r~dL~~yFr~V~~ 264 (382)
.. .+|++++-. +|. .+-..|..|...|.++..
T Consensus 64 --------------------------------------~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~ 105 (328)
T COG0270 64 --------------------------------------RKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIE 105 (328)
T ss_pred --------------------------------------cccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHH
Confidence 01 456666431 222 466778888899999999
Q ss_pred hccCCCcEEEEe
Q 045407 265 ALSKKGGIFVMD 276 (382)
Q Consensus 265 ~L~~pGGiFVfD 276 (382)
.|+ | -+|||.
T Consensus 106 ~~~-P-~~fv~E 115 (328)
T COG0270 106 QLR-P-KFFVLE 115 (328)
T ss_pred hhC-C-CEEEEe
Confidence 998 6 888885
No 256
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=93.12 E-value=0.77 Score=40.00 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.8
Q ss_pred EecCHHHHHHHHHHcCCcEEEEEec
Q 045407 336 RLWSLPEIKDCLEEAGFRSVHFWLR 360 (382)
Q Consensus 336 Rlysl~EI~d~LeeAGF~~V~v~~r 360 (382)
+=|++++++.++++|||..++.|..
T Consensus 94 ~Ky~~~~~~~l~~~aGl~~~~~w~d 118 (127)
T PF10017_consen 94 YKYSPEEFEALAEQAGLEVEKRWTD 118 (127)
T ss_pred eCcCHHHHHHHHHHCCCeeEEEEEC
Confidence 5689999999999999999999963
No 257
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=92.90 E-value=1.3 Score=43.04 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.|+..+++.++.. .+..|+-||||-=.-.-++.. .. .+.-+++|..-+-..+++.+.+.+.....+..++..|++
T Consensus 68 r~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~-~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~- 142 (260)
T TIGR00027 68 RFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPW-PD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR- 142 (260)
T ss_pred HHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCC-CC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-
Confidence 5666666655532 245688999998766665532 22 245555554434334444444333333457889999988
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
..|... |. ...|... .-.++...-.+.||. .+++.+.
T Consensus 143 ~~w~~~-------------L~----------------------------~~gfd~~-~ptl~i~EGvl~YL~-~~~v~~l 179 (260)
T TIGR00027 143 QDWPAA-------------LA----------------------------AAGFDPT-APTAWLWEGLLMYLT-EEAVDAL 179 (260)
T ss_pred hhHHHH-------------HH----------------------------hCCCCCC-CCeeeeecchhhcCC-HHHHHHH
Confidence 665322 10 0112122 233444444667755 5789999
Q ss_pred HHHHHhhccCCCcEEEEeccCC
Q 045407 259 FKHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfDl~gg 280 (382)
|+.+.+... ||+.++||..+.
T Consensus 180 l~~i~~~~~-~gs~l~~d~~~~ 200 (260)
T TIGR00027 180 LAFIAELSA-PGSRLAFDYVRP 200 (260)
T ss_pred HHHHHHhCC-CCcEEEEEeccc
Confidence 999999887 899999998754
No 258
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=92.51 E-value=0.19 Score=49.45 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=47.5
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cccCCCCcceEEEeccCC
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KVGADGYSRISLFHGNVL 177 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~RI~l~~gDV~ 177 (382)
.+|||-+.|-|-.+++-+++|.. +|+-|.-||..|++|.-|--+ .+-+ ..|.++.||.-
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~-~VitvEkdp~VLeLa~lNPwSr~l~~---~~i~iilGD~~ 195 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAI-HVITVEKDPNVLELAKLNPWSRELFE---IAIKIILGDAY 195 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCc-EEEEEeeCCCeEEeeccCCCCccccc---cccEEecccHH
Confidence 46999999999999999999963 899999999999998877443 1111 25888999853
No 259
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.32 E-value=1.7 Score=42.63 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=72.7
Q ss_pred CCCCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCcc-HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 78 TDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTA-LLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 78 ~~~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG-~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
++.|.--.-|||.---|..-+.-..-...++. -...+|| ++|-. +.|+.++-.+...+|+-||+|..+|+.-.+.
T Consensus 11 ~~RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~gd--L~gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~ 86 (243)
T PF01861_consen 11 KNRPEPDVELDQGYATPETTLRRAALMAERGD--LEGKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRV 86 (243)
T ss_dssp TT-----GGGT---B-HHHHHHHHHHHHHTT---STT-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHH
T ss_pred HcCCCCccccccccccHHHHHHHHHHHHhcCc--ccCCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHH
Confidence 34554455566664444444333333333321 1123453 44443 4466666667778999999999999987765
Q ss_pred ccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCc
Q 045407 157 NLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPAR 236 (382)
Q Consensus 157 ~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 236 (382)
+.. .+..|..++.|++++.-.. + .++|
T Consensus 87 a~~-----~gl~i~~~~~DlR~~LP~~--------------~----------------------------------~~~f 113 (243)
T PF01861_consen 87 AEE-----EGLPIEAVHYDLRDPLPEE--------------L----------------------------------RGKF 113 (243)
T ss_dssp HHH-----HT--EEEE---TTS---TT--------------T----------------------------------SS-B
T ss_pred HHH-----cCCceEEEEecccccCCHH--------------H----------------------------------hcCC
Confidence 422 2346999999999987111 1 4678
Q ss_pred cEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhh-Hhhhc
Q 045407 237 DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKL-RLQRR 292 (382)
Q Consensus 237 DiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl-~~~R~ 292 (382)
|++++== - -+.+.+.+.+.+..++|+.+||.-.|-+-...++..++ ..|+.
T Consensus 114 D~f~TDP--P---yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~ 165 (243)
T PF01861_consen 114 DVFFTDP--P---YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRF 165 (243)
T ss_dssp SEEEE--------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHH
T ss_pred CEEEeCC--C---CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHH
Confidence 9876521 1 13478999999999999988876666554443333333 23444
No 260
>PRK10458 DNA cytosine methylase; Provisional
Probab=92.30 E-value=0.34 Score=51.22 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=45.8
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+++|||||.|-++.-|-+.|.+ .|.++|+++.+.+--+.|... . .....+.+|++++.
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~-~v~a~Eid~~A~~TY~~N~~~----~--p~~~~~~~DI~~i~ 147 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQ-CVFTSEWNKHAVRTYKANWYC----D--PATHRFNEDIRDIT 147 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCE-EEEEEechHHHHHHHHHHcCC----C--CccceeccChhhCc
Confidence 46889999999999999999985 788999999998877766411 1 12345678888776
No 261
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.12 E-value=0.4 Score=49.27 Aligned_cols=125 Identities=15% Similarity=0.215 Sum_probs=76.2
Q ss_pred cCChhhHHHHH-HHHHHhhCC-CCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccc-cccCCCCc
Q 045407 92 QSPKGDISYLQ-KFFLIYVGG-RQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLN-KVGADGYS 167 (382)
Q Consensus 92 q~p~~Di~yl~-~~f~~y~gg-r~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~ 167 (382)
|.+.=|++-+. +++..+... ..+..+||..+|||.=+++|++- ..-..|+..|+|++++++.++|... .+.. .
T Consensus 26 ~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~ 102 (377)
T PF02005_consen 26 MEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED---E 102 (377)
T ss_dssp GHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG---C
T ss_pred hhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC---c
Confidence 34556665544 122222111 23678999999999999999998 3335899999999999998887422 2211 2
Q ss_pred ceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhc
Q 045407 168 RISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCC 247 (382)
Q Consensus 168 RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~ 247 (382)
++.+.++|...+. . . ....||+|=- |.|+
T Consensus 103 ~~~v~~~DAn~ll-------------~---~---------------------------------~~~~fD~IDl--DPfG 131 (377)
T PF02005_consen 103 RIEVSNMDANVLL-------------Y---S---------------------------------RQERFDVIDL--DPFG 131 (377)
T ss_dssp CEEEEES-HHHHH-------------C---H---------------------------------STT-EEEEEE----SS
T ss_pred eEEEehhhHHHHh-------------h---h---------------------------------ccccCCEEEe--CCCC
Confidence 6777887743222 0 0 1456888743 4554
Q ss_pred ccCChhHHHHHHHHHHhhccCCCcEEEE---ec
Q 045407 248 CLHKRADLVLYFKHVLHALSKKGGIFVM---DL 277 (382)
Q Consensus 248 yL~~r~dL~~yFr~V~~~L~~pGGiFVf---Dl 277 (382)
.-.-++..+.++++ .||++-+ |+
T Consensus 132 ------Sp~pfldsA~~~v~-~gGll~vTaTD~ 157 (377)
T PF02005_consen 132 ------SPAPFLDSALQAVK-DGGLLCVTATDT 157 (377)
T ss_dssp --------HHHHHHHHHHEE-EEEEEEEEE--H
T ss_pred ------CccHhHHHHHHHhh-cCCEEEEecccc
Confidence 34778999999999 8999988 65
No 262
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=91.93 E-value=1.3 Score=43.10 Aligned_cols=100 Identities=9% Similarity=0.067 Sum_probs=70.3
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCH----HHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccch
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDL----EALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEP 189 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~----emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~ 189 (382)
..||=||..+|..-..++-- |+...|.+|..|+ ++|..|+++. +|-=+-+|.+.|..-+-
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~----------NIiPIl~DAr~P~~Y~~----- 139 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP----------NIIPILEDARHPEKYRM----- 139 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST----------TEEEEES-TTSGGGGTT-----
T ss_pred CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC----------ceeeeeccCCChHHhhc-----
Confidence 36899999988766555542 3356899999999 7788888773 56656679998872100
Q ss_pred hhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCC
Q 045407 190 QKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKK 269 (382)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~p 269 (382)
+ .+.+|+|.+=- ..+.+..-...++...|+ +
T Consensus 140 -----------------------------------------l-v~~VDvI~~DV------aQp~Qa~I~~~Na~~fLk-~ 170 (229)
T PF01269_consen 140 -----------------------------------------L-VEMVDVIFQDV------AQPDQARIAALNARHFLK-P 170 (229)
T ss_dssp -----------------------------------------T-S--EEEEEEE-------SSTTHHHHHHHHHHHHEE-E
T ss_pred -----------------------------------------c-cccccEEEecC------CChHHHHHHHHHHHhhcc-C
Confidence 1 35789887643 456777888889999999 9
Q ss_pred CcEEEEecc
Q 045407 270 GGIFVMDLY 278 (382)
Q Consensus 270 GGiFVfDl~ 278 (382)
||.|++=+.
T Consensus 171 gG~~~i~iK 179 (229)
T PF01269_consen 171 GGHLIISIK 179 (229)
T ss_dssp EEEEEEEEE
T ss_pred CcEEEEEEe
Confidence 999998654
No 263
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=91.83 E-value=0.67 Score=46.53 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEe
Q 045407 95 KGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFH 173 (382)
Q Consensus 95 ~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~ 173 (382)
..||++|...+.-- .| .+|+|-|.|+|.+|..++|. +|..++.-.|+...--.-|++..... + -++.+.+.|
T Consensus 91 t~Dia~I~~~L~i~-PG---svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-g--i~~~vt~~h 163 (314)
T KOG2915|consen 91 TPDIAMILSMLEIR-PG---SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-G--IGDNVTVTH 163 (314)
T ss_pred cccHHHHHHHhcCC-CC---CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-C--CCcceEEEE
Confidence 35788887766532 22 36899999999999999986 57778999999987777777765431 1 235799999
Q ss_pred ccCCCch
Q 045407 174 GNVLQPL 180 (382)
Q Consensus 174 gDV~~~~ 180 (382)
.||+...
T Consensus 164 rDVc~~G 170 (314)
T KOG2915|consen 164 RDVCGSG 170 (314)
T ss_pred eecccCC
Confidence 9998766
No 264
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.32 E-value=2.5 Score=42.18 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.|+.++++.++... -..|.-||||==.=+-++- .+.+-+|.-||+ |+.+++=++ .+...++....++.++..|+++
T Consensus 79 r~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~-~~~~~~vfEvD~-Pevi~~K~~-~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 79 RYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLD-WPKGTRVFEVDL-PEVIEFKKK-LLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHhc-ccEEEEeccccccceeecC-CCCCCeEEECCC-cHHHHHHHH-HhhhcCCCCCceEEEEeccccc
Confidence 57777777666433 3457789999443322221 111235666666 556665444 4443444334489999999999
Q ss_pred chhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHH
Q 045407 179 PLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLY 258 (382)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~y 258 (382)
.+|... |. -.+|... .=..+..-=.+.||.. +.+.+.
T Consensus 155 ~dw~~~-------------L~----------------------------~~G~d~~-~pt~~iaEGLl~YL~~-~~v~~l 191 (297)
T COG3315 155 DDWPQA-------------LA----------------------------AAGFDRS-RPTLWIAEGLLMYLPE-EAVDRL 191 (297)
T ss_pred cchHHH-------------HH----------------------------hcCCCcC-CCeEEEeccccccCCH-HHHHHH
Confidence 988544 20 0112112 2234444457778664 788999
Q ss_pred HHHHHhhccCCCcEEEEecc-CCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeeeeeeEEe
Q 045407 259 FKHVLHALSKKGGIFVMDLY-GGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAFSYNWRL 337 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfDl~-gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~fsy~~Rl 337 (382)
|..+..++. ||-.++++.. .+..... . .-...|.. ..+......+..|-.
T Consensus 192 l~~I~~~~~-~gS~~~~~~~~~~~~~~~-----~---~~~~~~~~--------------------~~~~~~~~~e~~~~~ 242 (297)
T COG3315 192 LSRIAALSA-PGSRVAFDYSLPGSLRDR-----L---RRPAARKT--------------------MRGEDLDRGELVYFG 242 (297)
T ss_pred HHHHHHhCC-CCceEEEeccccHHHHhc-----c---cchhhhhh--------------------ccccccccccceecc
Confidence 999999997 7887777763 1111100 0 00001110 000011123333444
Q ss_pred cCHHHHHHHHHHcCCcEEEE
Q 045407 338 WSLPEIKDCLEEAGFRSVHF 357 (382)
Q Consensus 338 ysl~EI~d~LeeAGF~~V~v 357 (382)
-...|+..+|.+.||..+..
T Consensus 243 ~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 243 DDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred CCHHHHHHHHHhcCEEEEec
Confidence 55789999999999998887
No 265
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=91.32 E-value=0.38 Score=45.47 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=47.5
Q ss_pred ccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCc
Q 045407 117 LQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQP 179 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~ 179 (382)
|.|+||--|.|.+.|+++|.--+|+++|+++..|+-|+++... .+ -..+|.+..+|=+++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~--l~~~i~~rlgdGL~~ 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YG--LEDRIEVRLGDGLEV 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT---TTTEEEEE-SGGGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cC--CcccEEEEECCcccc
Confidence 4699999999999999999877899999999999999997532 22 235899999995443
No 266
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=91.05 E-value=0.12 Score=53.07 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=58.6
Q ss_pred cCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc------cccCCC
Q 045407 92 QSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN------KVGADG 165 (382)
Q Consensus 92 q~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~------kl~~d~ 165 (382)
.+-+++.++|+...-|-..|. .|.|.|-|||.+...-|.-|. -|+|-|||--|+.-.+.+..+ +-+..
T Consensus 190 TSmDAeLSli~AN~Amv~pGd---ivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~~- 263 (421)
T KOG2671|consen 190 TSMDAELSLIMANQAMVKPGD---IVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS- 263 (421)
T ss_pred cccchhHHHHHhhhhccCCCC---EEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCCc-
Confidence 345778899988877743343 689999999999999888884 699999999888743322111 11110
Q ss_pred CcceEEEeccCCCchh
Q 045407 166 YSRISLFHGNVLQPLE 181 (382)
Q Consensus 166 ~~RI~l~~gDV~~~~~ 181 (382)
.--+.++.+|...++|
T Consensus 264 ~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 264 SQFLDVLTADFSNPPL 279 (421)
T ss_pred chhhheeeecccCcch
Confidence 0126778889888885
No 267
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=91.02 E-value=0.041 Score=53.34 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=67.2
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC-Cchhhhhcccchh
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL-QPLEAKLVRYEPQ 190 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~-~~~~~~~~~~~~~ 190 (382)
..|.+|||+|.|-|-++...+-.-. .|.+..||..|...-++++. +|+ ...|
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk~y----------------nVl~~~ew--------- 163 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNY----------------NVLTEIEW--------- 163 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhcCC----------------ceeeehhh---------
Confidence 4478999999999999999887664 58888899988876655542 221 1122
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
+ + ..-++|+|.|+|-.=.|+ +-...++.+..+|.+.+
T Consensus 164 -------~-~-------------------------------t~~k~dli~clNlLDRc~----~p~kLL~Di~~vl~psn 200 (288)
T KOG3987|consen 164 -------L-Q-------------------------------TDVKLDLILCLNLLDRCF----DPFKLLEDIHLVLAPSN 200 (288)
T ss_pred -------h-h-------------------------------cCceeehHHHHHHHHhhc----ChHHHHHHHHHHhccCC
Confidence 0 0 023589999998554443 44667888889999558
Q ss_pred cEEEEec
Q 045407 271 GIFVMDL 277 (382)
Q Consensus 271 GiFVfDl 277 (382)
|..|+-+
T Consensus 201 grvivaL 207 (288)
T KOG3987|consen 201 GRVIVAL 207 (288)
T ss_pred CcEEEEE
Confidence 8888754
No 268
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.01 E-value=1.7 Score=41.73 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=37.9
Q ss_pred CCcccccCCCccHhHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec-cCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLRSD-SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG-NVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g-~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g-DV~~~~ 180 (382)
..+|||+||-+|.-+.--.++- |..-|.||||=+ ...+. -+.++++ |+++|.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----------~~p~~-----Ga~~i~~~dvtdp~ 123 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----------IEPPE-----GATIIQGNDVTDPE 123 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----------ccCCC-----CcccccccccCCHH
Confidence 3579999999999986655544 888899999854 22111 2467777 899887
No 269
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=90.91 E-value=0.41 Score=47.00 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=47.5
Q ss_pred HHHHHHHhhCCC--CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 101 LQKFFLIYVGGR--QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 101 l~~~f~~y~ggr--~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
|..||.. +.+. .|.+|+|+|||.==|+..|....+..+.+|.|||..+++....- ...++ .+......|+
T Consensus 92 Ld~fY~~-if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~-l~~l~----~~~~~~v~Dl 163 (251)
T PF07091_consen 92 LDEFYDE-IFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAF-LAVLG----VPHDARVRDL 163 (251)
T ss_dssp HHHHHHH-HCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHH-HHHTT-----CEEEEEE-T
T ss_pred HHHHHHH-HHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHH-HHhhC----CCcceeEeee
Confidence 4455543 2232 26899999999999999999888888999999999999987764 23332 2455556565
No 270
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=90.87 E-value=0.52 Score=43.81 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=68.2
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhc
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRN 195 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~ 195 (382)
+++|+|.|.|.=++.||=.-|..+++-||-..-=.++-+.- ..+++- .++..+++.+.++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~-~~~L~L---~nv~v~~~R~E~~~--------------- 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEV-VRELGL---SNVEVINGRAEEPE--------------- 111 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHH-HHHHT----SSEEEEES-HHHTT---------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHH-HHHhCC---CCEEEEEeeecccc---------------
Confidence 69999999999999999999999999999998665544432 222322 36889998875522
Q ss_pred cccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 196 ISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
....||+|+|=-.+ .+...+.-+...|+ +||.|++
T Consensus 112 ------------------------------------~~~~fd~v~aRAv~--------~l~~l~~~~~~~l~-~~G~~l~ 146 (184)
T PF02527_consen 112 ------------------------------------YRESFDVVTARAVA--------PLDKLLELARPLLK-PGGRLLA 146 (184)
T ss_dssp ------------------------------------TTT-EEEEEEESSS--------SHHHHHHHHGGGEE-EEEEEEE
T ss_pred ------------------------------------cCCCccEEEeehhc--------CHHHHHHHHHHhcC-CCCEEEE
Confidence 14679999986532 44556666777888 9999887
No 271
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.72 E-value=0.52 Score=48.10 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=30.3
Q ss_pred ccCCCccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHh
Q 045407 119 EDFCGTALLSTEWLR-SDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 119 El~CGTG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
=+| |.|.+++.+|+ .| ++|+++|.|++-++.|++-
T Consensus 174 G~G-GlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 174 GAG-GLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCc-HHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh
Confidence 345 78999999999 66 6899999999999999875
No 272
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=89.84 E-value=0.65 Score=46.64 Aligned_cols=59 Identities=20% Similarity=0.052 Sum_probs=37.0
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEecc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGN 175 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gD 175 (382)
...||+|||.-.+=--|+.+-+.-+++|.|+|+.+|++|+++.... ..-..+|.++++.
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N--~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN--PNLESRIELRKQK 162 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT---T-TTTEEEEE--
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc--cccccceEEEEcC
Confidence 4689999999865444443434468999999999999999975331 0123589998764
No 273
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=89.74 E-value=2.1 Score=44.53 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=78.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhh
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLV 193 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~ 193 (382)
+..|+|+|||||.+|......-- ..+-+.|++.. . ....++++.-|.-.=++-.+++.-|. +-
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI----------~~i~~~~~~~~-----~-~~pe~qv~~nDLP~NDFNtlF~~L~~-~~ 126 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIV----------KHMSKRYESAG-----L-DPPEFSAFFSDLPSNDFNTLFQLLPP-LA 126 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHH----------HHHHHHhhhcC-----C-CCCcceEEecCCCCCCHHHHHhhchh-hh
Confidence 56799999999999888775421 11122222211 1 11258888877644444334333111 00
Q ss_pred hccccccccCccccchhh-hhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCCh--------------------
Q 045407 194 RNISLEECDNTLETSTIE-SAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKR-------------------- 252 (382)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r-------------------- 252 (382)
+.+.. ..+-+. .....+.++..++-.-.+-|+....+++++++ |+-||...
T Consensus 127 ~~~~~-------~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~-slHWLS~vP~~l~d~~s~~~Nkg~iyi~ 198 (386)
T PLN02668 127 NYGGS-------MEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAF-SLHWLSQVPESVTDKRSAAYNKGRVFIH 198 (386)
T ss_pred hhhcc-------hhhhccccCCCceEEEecCccccccccCCCceEEEEeec-cceecccCchhhccCCcccccCCceEec
Confidence 00000 000000 00012455666666677778888899999986 66676631
Q ss_pred ---------------hHHHHHHHHHHhhccCCCcEEEEeccCC
Q 045407 253 ---------------ADLVLYFKHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 253 ---------------~dL~~yFr~V~~~L~~pGGiFVfDl~gg 280 (382)
.|+...|+.=++-|. |||.+|+=+.|-
T Consensus 199 ~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELv-pGG~mvl~~~Gr 240 (386)
T PLN02668 199 GASESTANAYKRQFQADLAGFLRARAQEMK-RGGAMFLVCLGR 240 (386)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEEecC
Confidence 134455666677898 999999988764
No 274
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=87.54 E-value=4.1 Score=40.05 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=72.3
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEec---cCCCchhhhhcccchhhh
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHG---NVLQPLEAKLVRYEPQKL 192 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~g---DV~~~~~~~~~~~~~~~~ 192 (382)
+||+.|-|-|.+.+.+-++-+. .=+-+.-.|+.|..-+...-. ...+|..+.| ||..
T Consensus 104 rvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~-------------- 163 (271)
T KOG1709|consen 104 RVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLN-------------- 163 (271)
T ss_pred eEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhc--------------
Confidence 6999999999998887777764 667789999999876665321 1224555554 3321
Q ss_pred hhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcE
Q 045407 193 VRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGI 272 (382)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGi 272 (382)
++..+.||-|.==.||=-| +|+..++.||.+.|+ |+|+
T Consensus 164 -------------------------------------~L~d~~FDGI~yDTy~e~y----Edl~~~hqh~~rLLk-P~gv 201 (271)
T KOG1709|consen 164 -------------------------------------TLPDKHFDGIYYDTYSELY----EDLRHFHQHVVRLLK-PEGV 201 (271)
T ss_pred -------------------------------------cccccCcceeEeechhhHH----HHHHHHHHHHhhhcC-CCce
Confidence 1234669999776666555 899999999999999 9999
Q ss_pred EEE
Q 045407 273 FVM 275 (382)
Q Consensus 273 FVf 275 (382)
|-+
T Consensus 202 ~Sy 204 (271)
T KOG1709|consen 202 FSY 204 (271)
T ss_pred EEE
Confidence 876
No 275
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=87.47 E-value=1.2 Score=44.78 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=73.8
Q ss_pred CCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 111 GRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 111 gr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
...+.+|.|+||.+|..|..+...- ++.-+++..... ......++++.-|.-.=++..+++.=|.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~i--------------i~~i~~~~~~~~-~~~~~e~~v~~nDlP~NDFn~lF~~l~~ 78 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNI--------------IDAIRERCRSSN-NQPPPEFQVFFNDLPSNDFNTLFKSLPS 78 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHH--------------HHHHHHHHHCTT--SS--EEEEEEEE-TTS-HHHHHHCHHH
T ss_pred CCCceEEEecCCCCCccHHHHHHHH--------------HHHHHHHhhhhc-CCCCCeEEEEeCCCCCccHHHHHHhChh
Confidence 3446789999999999999988653 333333322110 0112468999988654444444333111
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCC-------------------
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHK------------------- 251 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~------------------- 251 (382)
.. .. ....+.+.++..++..-.+-|+....|++++++ |+.||..
T Consensus 79 ~~---------------~~-~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~-alHWLS~vP~~l~~~~~~~~Nkg~i~ 141 (334)
T PF03492_consen 79 FQ---------------QS-LKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSY-ALHWLSQVPEELVDKSSPAWNKGNIY 141 (334)
T ss_dssp HH---------------HH-HHHTTSEEEEEEES-TTS--S-TT-EEEEEEES--TTB-SSS-CCCCTTTSTTTSTTTSS
T ss_pred hh---------------hc-cCCCceEEEEecCchhhhccCCCCceEEEEEec-hhhhcccCCcccccccccccccCcEE
Confidence 10 00 001234445555555566667778899999986 5555542
Q ss_pred -----------------hhHHHHHHHHHHhhccCCCcEEEEeccC
Q 045407 252 -----------------RADLVLYFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 252 -----------------r~dL~~yFr~V~~~L~~pGGiFVfDl~g 279 (382)
..|+...|+.=++-|+ |||++|+=+.|
T Consensus 142 ~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv-~GG~mvl~~~g 185 (334)
T PF03492_consen 142 ISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV-PGGRMVLTFLG 185 (334)
T ss_dssp SSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred EecCCCHHHHHHHHHHHHHHHHHHHHHhhheec-cCcEEEEEEee
Confidence 1456666666778898 99999997765
No 276
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.31 E-value=3.6 Score=33.70 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=34.0
Q ss_pred CCccHhHHHHHH---hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 122 CGTALLSTEWLR---SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 122 CGTG~LS~elar---~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
||.|.++..+++ .+. ..|+.||.+++..+.+++.. +.++.||..++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~~~~~~~~~-----------~~~i~gd~~~~~ 53 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGG-IDVVVIDRDPERVEELREEG-----------VEVIYGDATDPE 53 (116)
T ss_dssp ES-SHHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT-----------SEEEES-TTSHH
T ss_pred EcCCHHHHHHHHHHHhCC-CEEEEEECCcHHHHHHHhcc-----------cccccccchhhh
Confidence 777777766554 222 36999999999988887762 568999998887
No 277
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=86.19 E-value=4.7 Score=33.36 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=29.3
Q ss_pred CccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 123 GTALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 123 GTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
|.|.+++.+|+.-. ++|+++|.+++-++.+++.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh
Confidence 56899999998876 8999999999999999875
No 278
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=85.87 E-value=2.4 Score=46.10 Aligned_cols=130 Identities=17% Similarity=0.116 Sum_probs=83.5
Q ss_pred CchHHHHHHhhcCChhhHHHHHHHHHHhh-CCCC--CCcccccCCCccHhHHHHHHh----CCCCeEEEEeCCHHHHHHH
Q 045407 81 PSKFLLYQQSVQSPKGDISYLQKFFLIYV-GGRQ--PLHLQEDFCGTALLSTEWLRS----DSRRTAVGLDLDLEALEWC 153 (382)
Q Consensus 81 p~~~~LYd~~vq~p~~Di~yl~~~f~~y~-ggr~--p~~LLEl~CGTG~LS~elar~----g~~~tVvGVDLS~emL~~A 153 (382)
|=|+.+||++|+. .++--+ .++. +.+|+=+|.|-|=|...-++. .-+-.+++|.-.|.++-.-
T Consensus 342 ~VKY~~Yq~Ai~~----------AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL 411 (649)
T KOG0822|consen 342 PVKYDQYQQAILK----------ALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTL 411 (649)
T ss_pred chHHHHHHHHHHH----------HHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhh
Confidence 4588899888532 221111 2222 677888999999876554432 1234689999999887766
Q ss_pred HHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCC
Q 045407 154 MENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSL 233 (382)
Q Consensus 154 ~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (382)
...+..- -..||.++..|||.+.. +.
T Consensus 412 ~~~n~~~----W~~~Vtii~~DMR~w~a--------------------------------------------------p~ 437 (649)
T KOG0822|consen 412 QNRNFEC----WDNRVTIISSDMRKWNA--------------------------------------------------PR 437 (649)
T ss_pred hhhchhh----hcCeeEEEeccccccCC--------------------------------------------------ch
Confidence 5555431 23589999999998871 02
Q ss_pred CCccEEEE-ccchhcccCChhHHHHHHHHHHhhccCCCcEEEEecc
Q 045407 234 PARDIICA-FNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLY 278 (382)
Q Consensus 234 ~~fDiV~a-fn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~ 278 (382)
.+.||+|+ +.-||++ .+-=-.++..|-..|+ |.||+|=--|
T Consensus 438 eq~DI~VSELLGSFGD---NELSPECLDG~q~fLk-pdgIsIP~sY 479 (649)
T KOG0822|consen 438 EQADIIVSELLGSFGD---NELSPECLDGAQKFLK-PDGISIPSSY 479 (649)
T ss_pred hhccchHHHhhccccC---ccCCHHHHHHHHhhcC-CCceEccchh
Confidence 56788876 3334443 1222457778888898 8899886443
No 279
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.75 E-value=2.9 Score=41.94 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=37.5
Q ss_pred cccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 116 HLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 116 ~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
+++=.|||+ |++++.+++.-.-.+|+.+|++++=|+.|++..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 688899997 999999999887779999999999999999863
No 280
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.69 E-value=0.79 Score=42.81 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=28.8
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCM 154 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~ 154 (382)
..++.|+|||+|.++..+++.+ ..|+.-|+++......+
T Consensus 21 ~~~~vepF~G~g~V~~~~~~~~--~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 21 HKTYVEPFAGGGSVFLNLKQPG--KRVIINDINPDLINFWK 59 (260)
T ss_dssp -SEEEETT-TTSHHHHCC---S--SEEEEEES-HHHHHHHH
T ss_pred CCEEEEEecchhHHHHHhcccc--cceeeeechHHHHHHHH
Confidence 4578999999999998887766 47999999999888766
No 281
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=85.23 E-value=1.7 Score=43.93 Aligned_cols=152 Identities=19% Similarity=0.215 Sum_probs=98.4
Q ss_pred CCCCCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCC-CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 77 STDMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQP-LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 77 ~~~~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p-~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
.+|.|-..+.|||..-.|..-++-+.- ||-.|..- ..|+=+| ---+.|+.++-.|..-+|.-||+|+-.+..-.+
T Consensus 118 aK~RP~p~~~yDQgfvTpEttv~Rv~l---m~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k 193 (354)
T COG1568 118 AKDRPEPLHQYDQGFVTPETTVSRVAL---MYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEK 193 (354)
T ss_pred HhcCCCcchhcccccccccceeeeeee---eccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHH
Confidence 478888899999999999888865433 44444322 2355555 445666777777766789999999999987665
Q ss_pred hccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCC
Q 045407 156 NNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPA 235 (382)
Q Consensus 156 ~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
-+. .-++.+|..+.-|+++|. |+++ ..+
T Consensus 194 ~ae----e~g~~~ie~~~~Dlr~pl--------pe~~----------------------------------------~~k 221 (354)
T COG1568 194 VAE----ELGYNNIEAFVFDLRNPL--------PEDL----------------------------------------KRK 221 (354)
T ss_pred HHH----HhCccchhheeehhcccC--------hHHH----------------------------------------Hhh
Confidence 432 224556889999999997 2332 355
Q ss_pred ccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCchhhhhHh
Q 045407 236 RDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSSEQKLRL 289 (382)
Q Consensus 236 fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~ 289 (382)
||+++.== -.+-..|.+++.+=-.+|+++|+-=.|-+-.-.++..+++.
T Consensus 222 FDvfiTDP-----peTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~e 270 (354)
T COG1568 222 FDVFITDP-----PETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWRE 270 (354)
T ss_pred CCeeecCc-----hhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHH
Confidence 77654211 01234666777777788887765555555444455555554
No 282
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=85.10 E-value=4.9 Score=39.34 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=29.6
Q ss_pred cEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCC
Q 045407 237 DIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 237 DiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg 280 (382)
.|.+...|.=.| +.-...|.+++..|. |||+.|||=|+-
T Consensus 177 ~IAll~lD~DlY----esT~~aLe~lyprl~-~GGiIi~DDY~~ 215 (248)
T PF05711_consen 177 RIALLHLDCDLY----ESTKDALEFLYPRLS-PGGIIIFDDYGH 215 (248)
T ss_dssp -EEEEEE---SH----HHHHHHHHHHGGGEE-EEEEEEESSTTT
T ss_pred cEEEEEEeccch----HHHHHHHHHHHhhcC-CCeEEEEeCCCC
Confidence 567777777667 677889999999999 999999987764
No 283
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=84.92 E-value=3.8 Score=35.05 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=29.5
Q ss_pred CChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhh
Q 045407 250 HKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKL 287 (382)
Q Consensus 250 ~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl 287 (382)
.+.+++..-++.+.+.+....|++|| |++||+++....
T Consensus 39 ~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~ 77 (116)
T TIGR00824 39 ENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAA 77 (116)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH
Confidence 45678888888888888645787777 999999876543
No 284
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.49 E-value=13 Score=33.54 Aligned_cols=57 Identities=7% Similarity=-0.126 Sum_probs=35.8
Q ss_pred cccccCCCccH----hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL----LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~----LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|+ +|. ++..|+++|+ +|++++-+++.+....+... . ...++.++.+|+.++.
T Consensus 8 ~ilItGa-sg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~----~-~~~~~~~~~~Dl~~~~ 68 (251)
T PRK12826 8 VALVTGA-ARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVE----A-AGGKARARQVDVRDRA 68 (251)
T ss_pred EEEEcCC-CCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----h-cCCeEEEEECCCCCHH
Confidence 4554454 444 4455677775 79999999776654333221 1 1235889999998876
No 285
>PRK07576 short chain dehydrogenase; Provisional
Probab=84.09 E-value=6.3 Score=36.97 Aligned_cols=47 Identities=6% Similarity=-0.035 Sum_probs=30.8
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+++|.+++-+....+... .. ..++.++..|++++.
T Consensus 25 la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~-~~~~~~~~~Dv~~~~ 71 (264)
T PRK07576 25 IAQAFARAGA--NVAVASRSQEKVDAAVAQLQ----QA-GPEGLGVSADVRDYA 71 (264)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----Hh-CCceEEEECCCCCHH
Confidence 3445666774 69999999887764433221 11 236788899998766
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=83.98 E-value=6.5 Score=39.30 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=35.6
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||..|||+ |.++..+|+.-...+|+++|.++++++.+++.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 3678889999 99999999886533699999999999998875
No 287
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=83.97 E-value=1.1 Score=47.86 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=38.7
Q ss_pred CCCCcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhc
Q 045407 112 RQPLHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 112 r~p~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~ 157 (382)
..++++||..|+||+-+++||+.-+. ..|++.|+++.+++..++|.
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv 154 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNV 154 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhh
Confidence 44778999999999999999986332 36899999999999888874
No 288
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=82.79 E-value=2.3 Score=43.09 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=50.3
Q ss_pred CcccccCCCccHhHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSR-RTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~-~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..++|.=-|.|-+|..++...+. .+++|+|-|+.+|+.|++.... -..|+.++|++..++.
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-----~~~r~~~v~~~F~~l~ 86 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-----FDGRVTLVHGNFANLA 86 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc-----cCCcEEEEeCcHHHHH
Confidence 56788888999999999999863 4599999999999999998532 1258999999876665
No 289
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.47 E-value=9.2 Score=39.38 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=36.2
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
..+|=+|+|+ |+++..||+.---.+|+.+|+++.-|+.|++
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3688889995 8999999998777799999999999999998
No 290
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.35 E-value=8.1 Score=38.35 Aligned_cols=139 Identities=16% Similarity=0.227 Sum_probs=85.1
Q ss_pred CchHHHHHHhhcCChhhH--HH----HHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCC------C---eEEEEeC
Q 045407 81 PSKFLLYQQSVQSPKGDI--SY----LQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSR------R---TAVGLDL 145 (382)
Q Consensus 81 p~~~~LYd~~vq~p~~Di--~y----l~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~------~---tVvGVDL 145 (382)
-+|-.+|=++......-+ .| +.+-|..+ .| ..++.||+.-+|.-|.-|.|+-+. . .+|+|||
T Consensus 6 kDKRDiYYRlAKe~gwRARSAFKLlqideef~i~-~g--v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDL 82 (294)
T KOG1099|consen 6 KDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIF-EG--VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDL 82 (294)
T ss_pred chhhHHHHHHHHhccchHHhHHHHhhhhhhhhHH-hh--hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEec
Confidence 356667776665555554 22 12222221 12 346789999999988887776442 1 1899999
Q ss_pred CHHHHHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCC
Q 045407 146 DLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDN 225 (382)
Q Consensus 146 S~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (382)
-+ +..| .-|.-+|+|+..+.-+. .+++-
T Consensus 83 Q~----------MaPI-----~GV~qlq~DIT~~stae-------~Ii~h------------------------------ 110 (294)
T KOG1099|consen 83 QP----------MAPI-----EGVIQLQGDITSASTAE-------AIIEH------------------------------ 110 (294)
T ss_pred cc----------CCcc-----CceEEeecccCCHhHHH-------HHHHH------------------------------
Confidence 76 1112 23677899999887322 22221
Q ss_pred cCccCCCCCCccEEEEcc--chhcccCCh------hHHHHHHHHHHhhccCCCcEEEEeccCCC
Q 045407 226 CSKQKSSLPARDIICAFN--YSCCCLHKR------ADLVLYFKHVLHALSKKGGIFVMDLYGGT 281 (382)
Q Consensus 226 ~~~~~~~~~~fDiV~afn--~S~~yL~~r------~dL~~yFr~V~~~L~~pGGiFVfDl~gg~ 281 (382)
|...+-|+|||=- ++-+ ||+- +-|+..|.-+...|+ |||.||--++.|.
T Consensus 111 -----fggekAdlVvcDGAPDvTG-lHd~DEy~Q~qLllaAl~i~t~Vlk-~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 111 -----FGGEKADLVVCDGAPDVTG-LHDLDEYVQAQLLLAALNIATCVLK-PGGSFVAKIFRGR 167 (294)
T ss_pred -----hCCCCccEEEeCCCCCccc-cccHHHHHHHHHHHHHHHHHhheec-CCCeeehhhhccC
Confidence 3345678888743 1211 3333 345677888888998 9999999888554
No 291
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.31 E-value=17 Score=33.84 Aligned_cols=54 Identities=7% Similarity=-0.011 Sum_probs=35.1
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=.|+++| .++..|++.|+ +|+.+|.+++-++...+.. ..++.++++|+.+..
T Consensus 9 vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~ 65 (261)
T PRK08265 9 AIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL--------GERARFIATDITDDA 65 (261)
T ss_pred EEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh--------CCeeEEEEecCCCHH
Confidence 444454333 24556677785 7999999987655433321 136889999998876
No 292
>PTZ00357 methyltransferase; Provisional
Probab=80.18 E-value=14 Score=41.90 Aligned_cols=65 Identities=18% Similarity=0.107 Sum_probs=43.4
Q ss_pred CcccccCCCccHhHHHHHHh----CCCCeEEEEeCCHHHHHHHHHh--ccccccCC----CCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRS----DSRRTAVGLDLDLEALEWCMEN--NLNKVGAD----GYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~----g~~~tVvGVDLS~emL~~A~e~--~~~kl~~d----~~~RI~l~~gDV~~~~ 180 (382)
.+|+=+|+|-|=|-.+.++. |-+.+|++|.=.+.+....+.+ +.. ...+ -+.+|.+++.|||.+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~e-eW~n~~~~~G~~VtII~sDMR~W~ 776 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDP-EWTQLAYTFGHTLEVIVADGRTIA 776 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccc-ccccccccCCCeEEEEeCcccccc
Confidence 56888999999887665544 4456899999996643333333 222 1111 1357999999999986
No 293
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.82 E-value=15 Score=34.58 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=40.1
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.|. ++..|++.|+ +|+.+|.+.+-++-..+.... ....++.++++|+.++.
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~Dv~~~~ 71 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKS----ESNVDVSYIVADLTKRE 71 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh----hcCCceEEEEecCCCHH
Confidence 34555665542 6677888885 699999998887655543211 11247889999999886
No 294
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=79.15 E-value=18 Score=33.27 Aligned_cols=49 Identities=10% Similarity=-0.022 Sum_probs=32.7
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|+ +|+.+|.+...++...+..... .+..++.++..|+.++.
T Consensus 18 la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~ 66 (259)
T PRK12384 18 LCHGLAEEGY--RVAVADINSEKAANVAQEINAE---YGEGMAYGFGADATSEQ 66 (259)
T ss_pred HHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHh---cCCceeEEEEccCCCHH
Confidence 5566777875 6999999988776544332111 11136889999998776
No 295
>PRK06953 short chain dehydrogenase; Provisional
Probab=78.67 E-value=17 Score=32.93 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=29.2
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.++.+++.++..... .+.++..|+.+..
T Consensus 17 la~~L~~~G~--~v~~~~r~~~~~~~~~~~-----------~~~~~~~D~~~~~ 57 (222)
T PRK06953 17 FVRQYRADGW--RVIATARDAAALAALQAL-----------GAEALALDVADPA 57 (222)
T ss_pred HHHHHHhCCC--EEEEEECCHHHHHHHHhc-----------cceEEEecCCCHH
Confidence 5566777775 699999998877543321 2457899998876
No 296
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=77.91 E-value=1.8 Score=43.33 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=44.5
Q ss_pred HHHHHhhcCChhhHH---HHHHHH--HHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHH
Q 045407 85 LLYQQSVQSPKGDIS---YLQKFF--LIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALE 151 (382)
Q Consensus 85 ~LYd~~vq~p~~Di~---yl~~~f--~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~ 151 (382)
.+|+--...+..-++ |+.+-+ .+...| .+|||+|||+|..++...+.|. ..++--|++.+.|+
T Consensus 86 ~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~---k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 86 GVYEGGLKLWECSVDLLPYLKEEIGAQMSFSG---KRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLR 153 (282)
T ss_pred ceeecceEEeecHHHHHHHHHHHhhhheEecC---ceeEecCCcccccchhhhhhcc-ceeeeEecchhhee
Confidence 366666555555553 444332 332222 3689999999999999999996 57999999998883
No 297
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=77.89 E-value=18 Score=34.23 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=31.8
Q ss_pred CcccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||-.||| .|.+++.+|+.-. .+|++++-+++.++++++.
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~ 208 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL 208 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh
Confidence 356667887 4888888888643 5799999999999988654
No 298
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=77.83 E-value=15 Score=39.63 Aligned_cols=44 Identities=16% Similarity=-0.068 Sum_probs=33.6
Q ss_pred CCCCcccccCCCccH-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 112 RQPLHLQEDFCGTAL-LSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 112 r~p~~LLEl~CGTG~-LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..|.+|+=+|||+.- .++.+|+. ..++|+++|++++-++.|++-
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~-lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGS-LGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHc
Confidence 346789999999854 55555554 346899999999999988874
No 299
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=76.95 E-value=3.8 Score=38.96 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=37.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcc
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNL 158 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~ 158 (382)
..|||.|+|+|..+....+.| +..+|++++++-++.+.++..
T Consensus 224 diVlDpf~GsGtt~~aa~~~~--r~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 224 DIVLDPFAGSGTTGIAAKNLG--RRFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred CEEeecCCCCChHHHHHHHcC--CceEEEecCHHHHHHHHHHHH
Confidence 468999999999999888888 469999999999999999853
No 300
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=76.34 E-value=7.8 Score=37.27 Aligned_cols=92 Identities=11% Similarity=-0.003 Sum_probs=57.9
Q ss_pred chHHHHHHhhcCCh---------hhHHHHHHHHHHhh----CCCC-CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCH
Q 045407 82 SKFLLYQQSVQSPK---------GDISYLQKFFLIYV----GGRQ-PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDL 147 (382)
Q Consensus 82 ~~~~LYd~~vq~p~---------~Di~yl~~~f~~y~----ggr~-p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~ 147 (382)
.++.-|.++++.+. ..-+++++++.--. .... +.+++|+|.|.|.=++.+|=..+..+|+=||-..
T Consensus 22 ~~l~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~ 101 (215)
T COG0357 22 EKLEAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLG 101 (215)
T ss_pred HHHHHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCc
Confidence 46777777665433 23355555552211 1111 5689999999999999988777777888888765
Q ss_pred HH---HHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 148 EA---LEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 148 em---L~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
-= |+.+.+. + +-.++.++++-+.++.
T Consensus 102 Kk~~FL~~~~~e----L---~L~nv~i~~~RaE~~~ 130 (215)
T COG0357 102 KKIAFLREVKKE----L---GLENVEIVHGRAEEFG 130 (215)
T ss_pred hHHHHHHHHHHH----h---CCCCeEEehhhHhhcc
Confidence 43 3333332 2 2235888988876554
No 301
>PRK07677 short chain dehydrogenase; Provisional
Probab=76.30 E-value=22 Score=32.74 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=33.5
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|. +|++++.+++.++...+... . ...++.+++.|+.++.
T Consensus 17 ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~ 63 (252)
T PRK07677 17 MAKRFAEEGA--NVVITGRTKEKLEEAKLEIE----Q-FPGQVLTVQMDVRNPE 63 (252)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----h-cCCcEEEEEecCCCHH
Confidence 4556677785 69999999988876654421 1 1247889999998876
No 302
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=76.22 E-value=3.7 Score=39.11 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCC--------eEEEEeCCHHHHHHHHHhc
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRR--------TAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~--------tVvGVDLS~emL~~A~e~~ 157 (382)
.|+...++.......|..|+|+|.|+|.|+.-+++.-... +.+-|+.|+.+-++-+++.
T Consensus 4 ~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L 70 (252)
T PF02636_consen 4 RWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL 70 (252)
T ss_dssp HHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred HHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence 4666666663111236899999999999998887754433 7999999999988777764
No 303
>PRK09072 short chain dehydrogenase; Provisional
Probab=76.08 E-value=30 Score=32.13 Aligned_cols=56 Identities=9% Similarity=-0.063 Sum_probs=38.6
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=.|+++| .++..|+++|+ +|++++.+++.+....... . ...++.++..|+.++.
T Consensus 8 vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-~-----~~~~~~~~~~D~~d~~ 66 (263)
T PRK09072 8 VLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARL-P-----YPGRHRWVVADLTSEA 66 (263)
T ss_pred EEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHH-h-----cCCceEEEEccCCCHH
Confidence 445565553 36667888885 6999999998776554332 1 1237889999998876
No 304
>PRK07326 short chain dehydrogenase; Provisional
Probab=75.70 E-value=18 Score=32.67 Aligned_cols=55 Identities=11% Similarity=-0.053 Sum_probs=35.5
Q ss_pred ccccCCCccHhHHH----HHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTALLSTE----WLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~LS~e----lar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=.| |||.++.. |++.|+ +|++++.+++-+....+... .. .++.++++|+.++.
T Consensus 9 ilItG-atg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~----~~--~~~~~~~~D~~~~~ 67 (237)
T PRK07326 9 ALITG-GSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELN----NK--GNVLGLAADVRDEA 67 (237)
T ss_pred EEEEC-CCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHh----cc--CcEEEEEccCCCHH
Confidence 44444 45555444 456664 79999999987765544321 11 46889999998775
No 305
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=75.09 E-value=11 Score=37.17 Aligned_cols=38 Identities=18% Similarity=-0.032 Sum_probs=29.1
Q ss_pred CCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHH
Q 045407 113 QPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALE 151 (382)
Q Consensus 113 ~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~ 151 (382)
++..+||||.|||.-++.+|..+. ..|+--|+-.-+.+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~-~~v~ltD~~~~~~~ 123 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG-AEVVLTDLPKVVEN 123 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc-ceeccCCchhhHHH
Confidence 356799999999999999988654 57887787664443
No 306
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.34 E-value=4.8 Score=37.63 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=48.8
Q ss_pred CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 110 GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 110 ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
.+.....++|+|.|-|++-..-+|-|. ..++|+.|.+=.+.+++-++... .-..+..|+.-|+-.
T Consensus 69 ~~n~~GklvDlGSGDGRiVlaaar~g~-~~a~GvELNpwLVaysrl~a~R~---g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 69 RGNPKGKLVDLGSGDGRIVLAAARCGL-RPAVGVELNPWLVAYSRLHAWRA---GCAKSTRFRRKDLWK 133 (199)
T ss_pred cCCCCCcEEeccCCCceeehhhhhhCC-CcCCceeccHHHHHHHHHHHHHH---hcccchhhhhhhhhh
Confidence 344336788999999999999999995 47999999999999998876541 112356676666533
No 307
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.26 E-value=37 Score=30.75 Aligned_cols=46 Identities=17% Similarity=0.074 Sum_probs=32.8
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|. +|++++-+++-++...... .. ..++.++++|+.++.
T Consensus 21 l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~~--~~~~~~~~~D~~~~~ 66 (251)
T PRK07231 21 IARRFAAEGA--RVVVTDRNEEAAERVAAEI----LA--GGRAIAVAADVSDEA 66 (251)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHH----hc--CCeEEEEECCCCCHH
Confidence 4445666775 6999999998777655442 11 246889999998887
No 308
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=74.23 E-value=35 Score=30.80 Aligned_cols=42 Identities=19% Similarity=0.079 Sum_probs=33.1
Q ss_pred CCcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 114 PLHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 114 p~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..+||-.|+|+ |..++.+++... .+|++++.+++.++.+++.
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh
Confidence 35688888885 878888888654 6899999999988887553
No 309
>PRK07890 short chain dehydrogenase; Provisional
Probab=74.19 E-value=20 Score=32.85 Aligned_cols=47 Identities=13% Similarity=-0.063 Sum_probs=32.1
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|. +|++++.+++-++-..+... . ...++.++..|+.++.
T Consensus 21 la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~ 67 (258)
T PRK07890 21 LAVRAARAGA--DVVLAARTAERLDEVAAEID----D-LGRRALAVPTDITDED 67 (258)
T ss_pred HHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH----H-hCCceEEEecCCCCHH
Confidence 3445777885 69999999987755443321 1 1236889999998876
No 310
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=74.00 E-value=17 Score=35.47 Aligned_cols=61 Identities=23% Similarity=0.188 Sum_probs=50.4
Q ss_pred ccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+.|.||=-|.|.+.|.+.++--+++++|+++-.|.-|.++. .+. .-..++....+|.+.+.
T Consensus 20 iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v-~~~--~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 20 IADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNV-KKN--NLSERIDVRLGDGLAVL 80 (226)
T ss_pred eeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHH-Hhc--CCcceEEEeccCCcccc
Confidence 89999999999999999999999999999999999998764 321 12347888888875443
No 311
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=73.98 E-value=3.4 Score=44.21 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=37.2
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.++||+|.|||+||..-+|.|.. .|+++..=..|.+.|++-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKI 108 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHH
Confidence 36899999999999999999976 799999999999999864
No 312
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.55 E-value=32 Score=31.02 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=36.3
Q ss_pred cccccCCCc--cH-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGT--AL-LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGT--G~-LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|++. |. ++..+++.|+ +|++++.+++-+....+.. .+ ..++.++.+|++++.
T Consensus 7 ~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~~--~~~~~~~~~Dl~~~~ 66 (238)
T PRK05786 7 KVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTL----SK--YGNIHYVVGDVSSTE 66 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH----Hh--cCCeEEEECCCCCHH
Confidence 455566643 33 3344556675 7999999998776543332 11 125888999998876
No 313
>PRK09186 flagellin modification protein A; Provisional
Probab=73.34 E-value=34 Score=31.29 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=33.0
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|+ +|++++.+++.++.+.+...... +...+.++++|+.++.
T Consensus 20 ~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dl~d~~ 68 (256)
T PRK09186 20 LVKAILEAGG--IVIAADIDKEALNELLESLGKEF---KSKKLSLVELDITDQE 68 (256)
T ss_pred HHHHHHHCCC--EEEEEecChHHHHHHHHHHHhhc---CCCceeEEEecCCCHH
Confidence 3455667774 79999999988876655431111 1235678899999876
No 314
>PRK08267 short chain dehydrogenase; Provisional
Probab=73.07 E-value=40 Score=31.09 Aligned_cols=55 Identities=7% Similarity=-0.109 Sum_probs=38.2
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=.|+++| .++..|++.|. +|+.++.+++.++...+.. . ..++.++++|+.+..
T Consensus 4 vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~---~~~~~~~~~D~~~~~ 61 (260)
T PRK08267 4 IFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAEL----G---AGNAWTGALDVTDRA 61 (260)
T ss_pred EEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHh----c---CCceEEEEecCCCHH
Confidence 334454433 35567888885 7999999998877655442 1 247889999998876
No 315
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=73.05 E-value=3.3 Score=44.00 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=48.3
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|-|+|||-|-.++..++.|- +|++-||.++|+.|-..+..- ++ ..++|..+..|..++.
T Consensus 251 evv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lNkv---~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 251 EVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLNKV---DPSAIEIFNMDAKDFL 312 (495)
T ss_pred chhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhcccccc---chhheeeecccHHHHh
Confidence 4678999999999999999994 799999999999999887422 33 2346888877755444
No 316
>PRK08589 short chain dehydrogenase; Validated
Probab=73.04 E-value=28 Score=32.73 Aligned_cols=57 Identities=9% Similarity=0.066 Sum_probs=35.3
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=.|++.| .++..|++.|. +|+.++.+ +.+.-..+... . ...++.++..|+.++.
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~-~~~~~~~~~~~----~-~~~~~~~~~~Dl~~~~ 67 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGA--YVLAVDIA-EAVSETVDKIK----S-NGGKAKAYHVDISDEQ 67 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEEeCc-HHHHHHHHHHH----h-cCCeEEEEEeecCCHH
Confidence 3444565544 25566788885 69999999 44443322211 1 1236889999998876
No 317
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=72.75 E-value=12 Score=36.89 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=27.3
Q ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 128 STEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 128 S~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..+|+++|+ +|+|+|....-..-.........+.....++.++.+|++++.
T Consensus 32 v~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~ 82 (348)
T PRK15181 32 LEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFT 82 (348)
T ss_pred HHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHH
Confidence 355666664 799999854321111111111111111247899999999875
No 318
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=72.66 E-value=48 Score=32.32 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=41.6
Q ss_pred CCCcccccCC---CccHhHHHHHH-hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchh
Q 045407 113 QPLHLQEDFC---GTALLSTEWLR-SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLE 181 (382)
Q Consensus 113 ~p~~LLEl~C---GTG~LS~elar-~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~ 181 (382)
+|..|.|.|. |++..++-.+. -|....|+|+|+|.-.|+-+... ..+|.|++|+-++|.-
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---------~p~i~f~egss~dpai 132 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---------VPDILFIEGSSTDPAI 132 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---------CCCeEEEeCCCCCHHH
Confidence 4777888875 55555554443 45446899999998776533222 2589999999998873
No 319
>PRK07904 short chain dehydrogenase; Provisional
Probab=72.46 E-value=27 Score=32.69 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=36.8
Q ss_pred CCcccccCCCccHhHHH----HHHhCCCCeEEEEeCCHHH-HHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTE----WLRSDSRRTAVGLDLDLEA-LEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~e----lar~g~~~tVvGVDLS~em-L~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+.++|=.||++| ++.. |++.|. ++|+.++.+++- ++-..+.. . +.+..++.+++.|+.++.
T Consensus 8 ~~~vlItGas~g-iG~~la~~l~~~gg-~~V~~~~r~~~~~~~~~~~~l-~---~~~~~~v~~~~~D~~~~~ 73 (253)
T PRK07904 8 PQTILLLGGTSE-IGLAICERYLKNAP-ARVVLAALPDDPRRDAAVAQM-K---AAGASSVEVIDFDALDTD 73 (253)
T ss_pred CcEEEEEcCCcH-HHHHHHHHHHhcCC-CeEEEEeCCcchhHHHHHHHH-H---hcCCCceEEEEecCCChH
Confidence 445667777443 3443 445542 479999998774 55443332 1 112237899999998876
No 320
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=71.85 E-value=32 Score=31.92 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=37.3
Q ss_pred cccccCCCcc--H-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA--L-LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG--~-LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++=.|++.| . ++..|++.|+ +|+.++.+++.++...+.. ..++.+++.|+.++.
T Consensus 8 ~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~ 65 (263)
T PRK06200 8 VALITGGGSGIGRALVERFLAEGA--RVAVLERSAEKLASLRQRF--------GDHVLVVEGDVTSYA 65 (263)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh--------CCcceEEEccCCCHH
Confidence 3555565433 2 4556777885 6999999998876554432 136788999999876
No 321
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=71.56 E-value=5.4 Score=41.75 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=31.4
Q ss_pred CCCccEEEEccchhccc--CChhHHHHHHHHHHhhccCCCcEEEEeccCCCc
Q 045407 233 LPARDIICAFNYSCCCL--HKRADLVLYFKHVLHALSKKGGIFVMDLYGGTS 282 (382)
Q Consensus 233 ~~~fDiV~afn~S~~yL--~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s 282 (382)
++.-|.+++..-+--.| .++..+..++++..+.|+ |||.||+== .|++
T Consensus 180 lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~-~gg~lVivE-rGtp 229 (484)
T COG5459 180 LPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLA-PGGHLVIVE-RGTP 229 (484)
T ss_pred CCccceeehhhhhhhhccccCcchHHHHHHHHHHhcc-CCCeEEEEe-CCCc
Confidence 45545444443332333 356677889999999999 899999843 3444
No 322
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.27 E-value=37 Score=30.93 Aligned_cols=52 Identities=15% Similarity=-0.011 Sum_probs=34.1
Q ss_pred CCccHhHHH----HHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 122 CGTALLSTE----WLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 122 CGTG~LS~e----lar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.|||-++.. |++.|+ +|++++.+++.++....... . ...++.++++|+.++.
T Consensus 11 G~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~Dl~~~~ 66 (258)
T PRK12429 11 GAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQ----K-AGGKAIGVAMDVTDEE 66 (258)
T ss_pred CCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH----h-cCCcEEEEEcCCCCHH
Confidence 344554444 455674 79999999988765544321 1 1247889999998876
No 323
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=70.75 E-value=12 Score=31.54 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=32.3
Q ss_pred CChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhhHhhhccCC
Q 045407 250 HKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKLRLQRRFAN 295 (382)
Q Consensus 250 ~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl~~~R~~~~ 295 (382)
.+.+++..-++.+.+.+.+..|++|| |++||+++..........+.
T Consensus 38 ~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~ 84 (116)
T PF03610_consen 38 ESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPN 84 (116)
T ss_dssp SCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTT
T ss_pred CCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHhccCCC
Confidence 34567777777777777667888888 99999988765544333334
No 324
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=69.92 E-value=22 Score=38.53 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCCccHhHHHHHHh--CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 121 FCGTALLSTEWLRS--DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 121 ~CGTG~LS~elar~--g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
=||-|+++..+++. .....++.+|.|++.++.+++. ....+.||..++.
T Consensus 405 I~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~ 455 (601)
T PRK03659 405 IVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLE 455 (601)
T ss_pred EecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHH
Confidence 38888888776652 2224799999999999887653 1457999998887
No 325
>PRK05650 short chain dehydrogenase; Provisional
Probab=69.71 E-value=39 Score=31.52 Aligned_cols=47 Identities=13% Similarity=-0.030 Sum_probs=32.5
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|. +|+.++.+.+-++-...... . .+.++.++++|+.++.
T Consensus 16 la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~----~-~~~~~~~~~~D~~~~~ 62 (270)
T PRK05650 16 IALRWAREGW--RLALADVNEEGGEETLKLLR----E-AGGDGFYQRCDVRDYS 62 (270)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----h-cCCceEEEEccCCCHH
Confidence 5567778885 69999999877665443321 1 1246888999998776
No 326
>PRK08177 short chain dehydrogenase; Provisional
Probab=69.67 E-value=32 Score=31.18 Aligned_cols=42 Identities=7% Similarity=-0.081 Sum_probs=29.7
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|+ +|++++.+++-++...+. .++.++..|+.++.
T Consensus 17 la~~l~~~G~--~V~~~~r~~~~~~~~~~~----------~~~~~~~~D~~d~~ 58 (225)
T PRK08177 17 LVDRLLERGW--QVTATVRGPQQDTALQAL----------PGVHIEKLDMNDPA 58 (225)
T ss_pred HHHHHHhCCC--EEEEEeCCCcchHHHHhc----------cccceEEcCCCCHH
Confidence 5777888885 799999998665433221 14667888998876
No 327
>PRK12939 short chain dehydrogenase; Provisional
Probab=69.56 E-value=29 Score=31.42 Aligned_cols=44 Identities=9% Similarity=-0.096 Sum_probs=30.2
Q ss_pred HHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 130 EWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 130 elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.|+++|+ +|++++.+++.+....+.... ...++.++++|+.++.
T Consensus 26 ~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~ 69 (250)
T PRK12939 26 ALAEAGA--TVAFNDGLAAEARELAAALEA-----AGGRAHAIAADLADPA 69 (250)
T ss_pred HHHHcCC--EEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccCCCHH
Confidence 3456774 699999998877655443211 1247899999998876
No 328
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=69.10 E-value=7.8 Score=40.34 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=40.4
Q ss_pred CCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhcc
Q 045407 114 PLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNL 158 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~ 158 (382)
|..++|-+||||.=+++.|.-...-.|+.-|+||++.+..++|..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~ 97 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVR 97 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHH
Confidence 678999999999999999988775589999999999999999854
No 329
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=69.10 E-value=42 Score=30.91 Aligned_cols=57 Identities=9% Similarity=-0.127 Sum_probs=35.5
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++=-|++.| .++..|+++|+ +|+.+|.++...+.+.+- .. .+.++.+++.|+.++.
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~-----~~-~~~~~~~~~~D~~~~~ 69 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAEL-----RA-AGGEALALTADLETYA 69 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHH-----Hh-cCCeEEEEEEeCCCHH
Confidence 3555565544 26667888885 699999986433322221 11 1236788999998875
No 330
>PRK05867 short chain dehydrogenase; Provisional
Probab=68.82 E-value=33 Score=31.60 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=40.1
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|=.|+++| .++..|++.|+ +|+.++.+++.++...+.. . .. +.++.++..|+.++.
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l-~---~~-~~~~~~~~~D~~~~~ 71 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEI-G---TS-GGKVVPVCCDVSQHQ 71 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHH-H---hc-CCeEEEEEccCCCHH
Confidence 4666677654 45667788885 6999999998876554432 1 11 246888999998876
No 331
>PRK06482 short chain dehydrogenase; Provisional
Probab=68.81 E-value=54 Score=30.60 Aligned_cols=54 Identities=9% Similarity=0.010 Sum_probs=37.4
Q ss_pred ccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=.||.+|. ++.+|+++|. +|+.++.+++.++...+.. ..++.++++|++++.
T Consensus 5 vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~ 61 (276)
T PRK06482 5 WFITGASSGFGRGMTERLLARGD--RVAATVRRPDALDDLKARY--------GDRLWVLQLDVTDSA 61 (276)
T ss_pred EEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc--------cCceEEEEccCCCHH
Confidence 4445554433 5667778885 6999999998776554432 136889999999876
No 332
>PRK06182 short chain dehydrogenase; Validated
Probab=68.58 E-value=36 Score=31.85 Aligned_cols=51 Identities=8% Similarity=-0.046 Sum_probs=32.5
Q ss_pred ccccCCCcc--H-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA--L-LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG--~-LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=.||+.| + ++..|++.|. +|++++.+++-|....+ ..+.++++|+.++.
T Consensus 6 vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l~~~~~-----------~~~~~~~~Dv~~~~ 59 (273)
T PRK06182 6 ALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKMEDLAS-----------LGVHPLSLDVTDEA 59 (273)
T ss_pred EEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh-----------CCCeEEEeeCCCHH
Confidence 444454332 2 3445567774 79999999887653221 13678999998876
No 333
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=68.32 E-value=36 Score=33.22 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=29.8
Q ss_pred cccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 116 HLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 116 ~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
+|+=.||| .|.+++.+|+.---.+|+++|.+++-++.|++.
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence 45445665 477778888764323699999999999988763
No 334
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.72 E-value=11 Score=38.20 Aligned_cols=55 Identities=13% Similarity=0.024 Sum_probs=37.2
Q ss_pred CcccccCCCccHhHHHHHHhCC--CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRSDS--RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~--~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.|+ +-||.|.++..+++.-. .++|+.+|-|++.++..++.. ..+.++.||..++.
T Consensus 232 ~~i--iIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~ 288 (453)
T PRK09496 232 KRV--MIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQE 288 (453)
T ss_pred CEE--EEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHH
Confidence 445 35777777666554321 147999999999988766652 13678999987775
No 335
>PRK08324 short chain dehydrogenase; Validated
Probab=66.80 E-value=37 Score=37.22 Aligned_cols=57 Identities=18% Similarity=0.010 Sum_probs=37.3
Q ss_pred cccccCCCcc--H-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA--L-LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG--~-LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|=.|+++| + ++..|++.|. +|+.+|.+++-++.+.+.. +.. .++.++..|+.++.
T Consensus 424 ~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l----~~~--~~v~~v~~Dvtd~~ 483 (681)
T PRK08324 424 VALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAEL----GGP--DRALGVACDVTDEA 483 (681)
T ss_pred EEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHH----hcc--CcEEEEEecCCCHH
Confidence 4555565333 3 3344556674 7999999998877655442 111 36889999998876
No 336
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=65.30 E-value=40 Score=31.83 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=60.6
Q ss_pred chhcccCChhHHHHHHHHHHhhccCCC-cEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeec
Q 045407 244 YSCCCLHKRADLVLYFKHVLHALSKKG-GIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQK 322 (382)
Q Consensus 244 ~S~~yL~~r~dL~~yFr~V~~~L~~pG-GiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~ 322 (382)
..-|||+ .++...++.|...|+++| |+.|+|.|-.......+... .++..||=.-..-.+=++..-++|++.-..
T Consensus 37 ~~~c~l~--~~aA~aL~~a~~~l~~~G~~L~I~D~yRP~~aq~~~w~~--~~~~~yVA~p~~~S~HsrG~AVDLTL~d~~ 112 (184)
T PRK10178 37 EARCLLH--KDAEAALRKAVSIAQLAGLTLRIYDAYRPQQAQQVLWDA--CPDPQYVADLGRGSNHSRGTAIDLTLVDAH 112 (184)
T ss_pred CCeEEEC--HHHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHh--CCCcCeeeCCCCCCCCCCceEEEEEEECCC
Confidence 4667777 466788889999998554 56777999766554443322 245455511101122233456666665433
Q ss_pred cccee-----eeeee---e-eEEecCH------HHHHHHHHHcCCcEEEE-Ee
Q 045407 323 EQKKL-----RHAFS---Y-NWRLWSL------PEIKDCLEEAGFRSVHF-WL 359 (382)
Q Consensus 323 ~~~~l-----r~~fs---y-~~Rlysl------~EI~d~LeeAGF~~V~v-~~ 359 (382)
|. .+ ...|+ + ...-.|. .-++.+|+++||....- ||
T Consensus 113 G~-~ldMGt~fD~f~~~s~~~~~~~s~~~~~nR~lL~~~M~~~GF~~~~~EWW 164 (184)
T PRK10178 113 GN-ILDMGTGFDEMHARSHHFHPGVPPAAQRNRLLLLGIMHAAGFVHIASEWW 164 (184)
T ss_pred CC-EecCCCCcCcCCccccccCCCCCHHHHHHHHHHHHHHHHcCCCCCCCccc
Confidence 32 11 11222 1 0112232 23568999999988643 77
No 337
>PRK06101 short chain dehydrogenase; Provisional
Probab=65.10 E-value=76 Score=29.09 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=31.4
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|+ +|+.++.+++.++...+. ..++.++++|+.++.
T Consensus 17 la~~L~~~G~--~V~~~~r~~~~~~~~~~~---------~~~~~~~~~D~~~~~ 59 (240)
T PRK06101 17 LALDYAKQGW--QVIACGRNQSVLDELHTQ---------SANIFTLAFDVTDHP 59 (240)
T ss_pred HHHHHHhCCC--EEEEEECCHHHHHHHHHh---------cCCCeEEEeeCCCHH
Confidence 4566778885 699999999877654332 135788999998876
No 338
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=64.38 E-value=22 Score=30.27 Aligned_cols=35 Identities=29% Similarity=0.591 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhh
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQ 285 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~ 285 (382)
+.+++..-++.+.+.+....|++|| |++||++...
T Consensus 39 ~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp~n~ 74 (122)
T cd00006 39 SPDDLLEKIKAALAELDSGEGVLILTDLFGGSPNNA 74 (122)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHH
Confidence 4456667777777777534677766 9999998754
No 339
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=63.74 E-value=81 Score=28.96 Aligned_cols=57 Identities=14% Similarity=-0.018 Sum_probs=36.3
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=.|.++| .++..|++.|. +|+.+|.+++.+....+... . ...++.++..|+.++.
T Consensus 12 ~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~----~-~~~~~~~~~~Dl~~~~ 71 (254)
T PRK08085 12 ILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLR----Q-EGIKAHAAPFNVTHKQ 71 (254)
T ss_pred EEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHH----h-cCCeEEEEecCCCCHH
Confidence 444454432 34556677774 79999999887765443321 1 1246788899998876
No 340
>PRK07109 short chain dehydrogenase; Provisional
Probab=63.59 E-value=52 Score=32.54 Aligned_cols=57 Identities=14% Similarity=-0.017 Sum_probs=36.9
Q ss_pred ccccCCCcc--H-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA--L-LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG--~-LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=.|++.| + ++..|++.|. +|+.++.+++.|+...+... + .+.++.++.+|+.++.
T Consensus 11 vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~----~-~g~~~~~v~~Dv~d~~ 70 (334)
T PRK07109 11 VVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIR----A-AGGEALAVVADVADAE 70 (334)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH----H-cCCcEEEEEecCCCHH
Confidence 444454332 2 3345667885 69999999988876554421 1 1247889999998876
No 341
>PRK08628 short chain dehydrogenase; Provisional
Probab=63.35 E-value=71 Score=29.34 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=31.4
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|. .|+.++.+++.++...+- .+ ...++.++..|+.++.
T Consensus 23 la~~l~~~G~--~v~~~~r~~~~~~~~~~~--~~----~~~~~~~~~~D~~~~~ 68 (258)
T PRK08628 23 ISLRLAEEGA--IPVIFGRSAPDDEFAEEL--RA----LQPRAEFVQVDLTDDA 68 (258)
T ss_pred HHHHHHHcCC--cEEEEcCChhhHHHHHHH--Hh----cCCceEEEEccCCCHH
Confidence 4566778885 599999998877443322 11 1236889999998876
No 342
>PRK06181 short chain dehydrogenase; Provisional
Probab=63.35 E-value=61 Score=29.87 Aligned_cols=44 Identities=9% Similarity=-0.060 Sum_probs=30.1
Q ss_pred HHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 130 EWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 130 elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.|++.|+ +|++++.++.-++...+.. . .. ..++.++.+|+.++.
T Consensus 20 ~l~~~g~--~Vi~~~r~~~~~~~~~~~l-~---~~-~~~~~~~~~Dl~~~~ 63 (263)
T PRK06181 20 RLARAGA--QLVLAARNETRLASLAQEL-A---DH-GGEALVVPTDVSDAE 63 (263)
T ss_pred HHHHCCC--EEEEEeCCHHHHHHHHHHH-H---hc-CCcEEEEEccCCCHH
Confidence 4566774 7999999987766544332 1 11 247889999998876
No 343
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=63.19 E-value=65 Score=29.61 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=30.4
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|++++.+++-+....... + .++.++.+|+.++.
T Consensus 16 la~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~----~~~~~~~~Dl~~~~ 59 (248)
T PRK10538 16 ITRRFIQQGH--KVIATGRRQERLQELKDEL----G----DNLYIAQLDVRNRA 59 (248)
T ss_pred HHHHHHHCCC--EEEEEECCHHHHHHHHHHh----c----cceEEEEecCCCHH
Confidence 3445567775 6999999998765443321 1 26888999998876
No 344
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=63.03 E-value=25 Score=35.55 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=29.6
Q ss_pred CChhHHHHHHHHHHhhccCCCcEEEE-eccCCCchhhhh
Q 045407 250 HKRADLVLYFKHVLHALSKKGGIFVM-DLYGGTSSEQKL 287 (382)
Q Consensus 250 ~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~gg~s~e~kl 287 (382)
.+.+++..-++.+.+.+....|++|| |++||+++....
T Consensus 40 ~~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N~a~ 78 (322)
T PRK15088 40 ENAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNAAS 78 (322)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH
Confidence 45688888899998888745677777 999999976533
No 345
>PRK08643 acetoin reductase; Validated
Probab=62.57 E-value=81 Score=28.93 Aligned_cols=47 Identities=6% Similarity=0.014 Sum_probs=33.0
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|+ +|+.+|.+++.++........ ...++.++.+|+.++.
T Consensus 18 la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~ 64 (256)
T PRK08643 18 IAKRLVEDGF--KVAIVDYNEETAQAAADKLSK-----DGGKAIAVKADVSDRD 64 (256)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEECCCCCHH
Confidence 4556777885 799999999877655443211 1236888999998887
No 346
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=62.47 E-value=52 Score=33.38 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=35.3
Q ss_pred CCCccHhHHHHHH----hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 121 FCGTALLSTEWLR----SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 121 ~CGTG~LS~elar----~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
-||.|.++..+++ .| ++|+.+|.+++-++.++++. .+.++.||..++.
T Consensus 5 IiG~G~ig~~~a~~L~~~g--~~v~vid~~~~~~~~~~~~~----------~~~~~~gd~~~~~ 56 (453)
T PRK09496 5 IVGAGQVGYTLAENLSGEN--NDVTVIDTDEERLRRLQDRL----------DVRTVVGNGSSPD 56 (453)
T ss_pred EECCCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhhc----------CEEEEEeCCCCHH
Confidence 3677887777666 45 47999999999888766531 3678889987665
No 347
>PRK05872 short chain dehydrogenase; Provisional
Probab=61.86 E-value=83 Score=30.16 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=37.0
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|=-|++.| .++..|++.|. +|+.++.+++.|+...+.. +. ..++..+..|+.++.
T Consensus 11 ~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l----~~--~~~~~~~~~Dv~d~~ 70 (296)
T PRK05872 11 VVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAEL----GG--DDRVLTVVADVTDLA 70 (296)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh----cC--CCcEEEEEecCCCHH
Confidence 3555565443 25556777885 7999999998876544432 21 235667779998876
No 348
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=61.58 E-value=38 Score=32.53 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=25.8
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
++..|.++|+..+|+|.|.+++.++.|.+..
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g 31 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELG 31 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTT
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCC
Confidence 4677889998889999999999999887763
No 349
>PRK06940 short chain dehydrogenase; Provisional
Probab=61.42 E-value=54 Score=31.12 Aligned_cols=51 Identities=14% Similarity=0.016 Sum_probs=32.7
Q ss_pred CccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 123 GTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 123 GTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|-|+..++.+..| ++|+.+|.+++-++-..+... . .+.++.+++.|+.++.
T Consensus 12 gIG~~la~~l~~G--~~Vv~~~r~~~~~~~~~~~l~----~-~~~~~~~~~~Dv~d~~ 62 (275)
T PRK06940 12 GIGQAIARRVGAG--KKVLLADYNEENLEAAAKTLR----E-AGFDVSTQEVDVSSRE 62 (275)
T ss_pred hHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHHHH----h-cCCeEEEEEeecCCHH
Confidence 4444444444456 579999999877754443321 1 1247889999998876
No 350
>PRK05717 oxidoreductase; Validated
Probab=61.15 E-value=68 Score=29.55 Aligned_cols=44 Identities=14% Similarity=0.001 Sum_probs=29.3
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.+|.+++-+.-..+. + ..++.++++|+.++.
T Consensus 26 ~a~~l~~~g~--~v~~~~~~~~~~~~~~~~----~----~~~~~~~~~Dl~~~~ 69 (255)
T PRK05717 26 IAAWLIAEGW--QVVLADLDRERGSKVAKA----L----GENAWFIAMDVADEA 69 (255)
T ss_pred HHHHHHHcCC--EEEEEcCCHHHHHHHHHH----c----CCceEEEEccCCCHH
Confidence 3445667774 799999998655432222 1 136789999999876
No 351
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.84 E-value=84 Score=29.24 Aligned_cols=45 Identities=7% Similarity=-0.200 Sum_probs=29.9
Q ss_pred HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 126 LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 126 ~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++..|++.|. +|+.++.+....+...+. .. .++.+++.|+.++.
T Consensus 24 a~a~~la~~G~--~Vi~~~r~~~~~~~~~~~-----~~---~~~~~~~~Dl~~~~ 68 (252)
T PRK06079 24 GCAQAIKDQGA--TVIYTYQNDRMKKSLQKL-----VD---EEDLLVECDVASDE 68 (252)
T ss_pred HHHHHHHHCCC--EEEEecCchHHHHHHHhh-----cc---CceeEEeCCCCCHH
Confidence 46778888885 699988875433332222 11 25778999998876
No 352
>PRK07806 short chain dehydrogenase; Provisional
Probab=60.62 E-value=1e+02 Score=28.02 Aligned_cols=58 Identities=7% Similarity=-0.137 Sum_probs=33.0
Q ss_pred cccccCCC--ccH-hHHHHHHhCCCCeEEEEeCCH-HHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCG--TAL-LSTEWLRSDSRRTAVGLDLDL-EALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CG--TG~-LS~elar~g~~~tVvGVDLS~-emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|=.|+. -|. ++..|++.|+ +|++++.+. ..++...... . . ...++.++++|+.++.
T Consensus 8 ~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l-~---~-~~~~~~~~~~D~~~~~ 69 (248)
T PRK07806 8 TALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEI-E---A-AGGRASAVGADLTDEE 69 (248)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHH-H---h-cCCceEEEEcCCCCHH
Confidence 45555652 232 3445566774 699988764 3343322221 1 1 1236788999999876
No 353
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=60.48 E-value=11 Score=39.09 Aligned_cols=42 Identities=7% Similarity=-0.049 Sum_probs=35.5
Q ss_pred CCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 233 LPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 233 ~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
.+++|+++-+ |++-|+.. +++....+.+.++++ |||.+++=-
T Consensus 293 ~~s~~~~vL~-D~~Dwm~~-~~~~~~~~~l~~~~~-pgaRV~~Rs 334 (380)
T PF11899_consen 293 PGSFDRFVLS-DHMDWMDP-EQLNEEWQELARTAR-PGARVLWRS 334 (380)
T ss_pred CCCeeEEEec-chhhhCCH-HHHHHHHHHHHHHhC-CCCEEEEee
Confidence 5678887655 79999776 899999999999999 999999943
No 354
>PRK05693 short chain dehydrogenase; Provisional
Probab=60.47 E-value=73 Score=29.75 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=28.0
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.| ++|++++.+.+.++..... .+.++.+|+.++.
T Consensus 17 la~~l~~~G--~~V~~~~r~~~~~~~~~~~-----------~~~~~~~Dl~~~~ 57 (274)
T PRK05693 17 LADAFKAAG--YEVWATARKAEDVEALAAA-----------GFTAVQLDVNDGA 57 (274)
T ss_pred HHHHHHHCC--CEEEEEeCCHHHHHHHHHC-----------CCeEEEeeCCCHH
Confidence 344566777 4799999998776543221 2567889998876
No 355
>PRK05855 short chain dehydrogenase; Validated
Probab=60.24 E-value=56 Score=33.59 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=32.7
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++.+|+++|. +|+.++.+.+.++-..+... .. +.++.++..|++++.
T Consensus 331 ~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~----~~-~~~~~~~~~Dv~~~~ 377 (582)
T PRK05855 331 TALAFAREGA--EVVASDIDEAAAERTAELIR----AA-GAVAHAYRVDVSDAD 377 (582)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----hc-CCeEEEEEcCCCCHH
Confidence 4556777885 69999999887765443321 11 236889999999887
No 356
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=59.99 E-value=41 Score=32.49 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=25.6
Q ss_pred cCCCc--cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 120 DFCGT--ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 120 l~CGT--G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
+|+|. |.++..|++.|. +|+++|.+++.++.+.+.
T Consensus 6 IG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~ 42 (279)
T PRK07417 6 VGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER 42 (279)
T ss_pred EeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC
Confidence 35553 456666777774 799999999998877654
No 357
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=59.81 E-value=88 Score=28.49 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=30.8
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.++.+...+.-..+.. . . ...++.++.+|+.++.
T Consensus 16 la~~l~~~G~--~v~~~~r~~~~~~~~~~~l-~---~-~~~~~~~~~~Dl~~~~ 62 (254)
T TIGR02415 16 IAERLAKDGF--AVAVADLNEETAKETAKEI-N---Q-AGGKAVAYKLDVSDKD 62 (254)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHH-H---h-cCCeEEEEEcCCCCHH
Confidence 3445667774 6999999987665333221 1 1 1247889999998876
No 358
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=59.77 E-value=58 Score=35.66 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=33.1
Q ss_pred CCccHhHHHHH----HhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 122 CGTALLSTEWL----RSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 122 CGTG~LS~ela----r~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
||-|+++..++ +.|. .++.+|.|++.++.+++. ....+.||..++.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~ 455 (621)
T PRK03562 406 AGFGRFGQIVGRLLLSSGV--KMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMD 455 (621)
T ss_pred EecChHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHH
Confidence 55556555444 3454 699999999999877653 2467999999887
No 359
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=59.22 E-value=22 Score=32.25 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=35.8
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCchhh
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPLEA 182 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~ 182 (382)
.|.-||||-=...-++.......+++-||+- +++++-++. +.+.+........++..|+.+..|.
T Consensus 81 qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p-~v~~~K~~~-l~~~~~~~~~~~~~v~~Dl~~~~~~ 145 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLDNPAGGVRWFEVDLP-EVIALKRRL-LPESGARPPANYRYVPADLRDDSWI 145 (183)
T ss_dssp EEEEET-TT--HHHHHHHTTTTEEEEEEE-H-HHHHHHHHH-HHHTHHHHHEESSEEES-TTSHHHH
T ss_pred EEEEcCCCCCchHHHhhccccceEEEEeCCH-HHHHHHHHH-HHhCcccCCcceeEEeccccchhhH
Confidence 5889999999888888775434456666653 366655544 2222110001356799999997763
No 360
>PRK09242 tropinone reductase; Provisional
Probab=58.84 E-value=99 Score=28.44 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=39.0
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++=.|+++| .++..|++.|+ +|+.++.+.+.++...++.... ....++.++.+|+.++.
T Consensus 11 ~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~~Dl~~~~ 73 (257)
T PRK09242 11 TALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEE---FPEREVHGLAADVSDDE 73 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhh---CCCCeEEEEECCCCCHH
Confidence 3555566443 35566777785 6999999998877554442111 01247889999998876
No 361
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=58.83 E-value=42 Score=36.54 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=25.6
Q ss_pred CccEEEEccchhcccCChhHH--HHHHHHHHhhccCCCcEEEE
Q 045407 235 ARDIICAFNYSCCCLHKRADL--VLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 235 ~fDiV~afn~S~~yL~~r~dL--~~yFr~V~~~L~~pGGiFVf 275 (382)
.+|+|.-=-+|=. .+ .++ ..+|+.+++.++ +||+|+-
T Consensus 166 ~~d~~~lD~FsP~--~n-p~~W~~~~~~~l~~~~~-~~~~~~t 204 (662)
T PRK01747 166 RADAWFLDGFAPA--KN-PDMWSPNLFNALARLAR-PGATLAT 204 (662)
T ss_pred cccEEEeCCCCCc--cC-hhhccHHHHHHHHHHhC-CCCEEEE
Confidence 4788875444432 11 222 678999999998 9999994
No 362
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=58.80 E-value=20 Score=38.16 Aligned_cols=48 Identities=13% Similarity=0.037 Sum_probs=35.5
Q ss_pred CCccHhHHHHHHh--CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 122 CGTALLSTEWLRS--DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 122 CGTG~LS~elar~--g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
||-|+.+..+++. .....|+.+|.|++.++.+++. ....++||..++.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~ 472 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEE 472 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHH
Confidence 7777776666653 1224799999999999888753 2568999998876
No 363
>PRK07832 short chain dehydrogenase; Provisional
Probab=58.64 E-value=95 Score=29.03 Aligned_cols=48 Identities=8% Similarity=-0.066 Sum_probs=30.4
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.++.+++.++...+.... . +...+.++..|+.++.
T Consensus 16 la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~-~---~~~~~~~~~~D~~~~~ 63 (272)
T PRK07832 16 TALRLAAQGA--ELFLTDRDADGLAQTVADARA-L---GGTVPEHRALDISDYD 63 (272)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-c---CCCcceEEEeeCCCHH
Confidence 3455677774 699999998877655443211 1 1123456788998876
No 364
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=58.52 E-value=28 Score=30.90 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=23.5
Q ss_pred ccEEEEccchhcccCChhHHHHHHHH--HHhhccCCCcEEEEeccCC
Q 045407 236 RDIICAFNYSCCCLHKRADLVLYFKH--VLHALSKKGGIFVMDLYGG 280 (382)
Q Consensus 236 fDiV~afn~S~~yL~~r~dL~~yFr~--V~~~L~~pGGiFVfDl~gg 280 (382)
.|+|+.+ +.+.+++...+.. +..+|+ +| ..|+|+..-
T Consensus 58 ~dvvi~~------v~~~~~v~~v~~~~~i~~~l~-~g-~iiid~sT~ 96 (163)
T PF03446_consen 58 ADVVILC------VPDDDAVEAVLFGENILAGLR-PG-KIIIDMSTI 96 (163)
T ss_dssp BSEEEE-------SSSHHHHHHHHHCTTHGGGS--TT-EEEEE-SS-
T ss_pred ccceEee------cccchhhhhhhhhhHHhhccc-cc-eEEEecCCc
Confidence 4777653 4666788888888 899997 44 555577643
No 365
>PRK06180 short chain dehydrogenase; Provisional
Probab=58.41 E-value=67 Score=30.23 Aligned_cols=54 Identities=13% Similarity=-0.161 Sum_probs=35.9
Q ss_pred ccccCCCcc--H-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA--L-LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG--~-LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=.||++| . ++..|+++|. +|++++.+++.++...+.. ..++..+.+|+.++.
T Consensus 7 vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~l~~~~--------~~~~~~~~~D~~d~~ 63 (277)
T PRK06180 7 WLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAARADFEALH--------PDRALARLLDVTDFD 63 (277)
T ss_pred EEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHHHHHHhhc--------CCCeeEEEccCCCHH
Confidence 555566443 2 4555667775 6999999998775433321 236888999998876
No 366
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=58.31 E-value=76 Score=29.11 Aligned_cols=57 Identities=7% Similarity=-0.115 Sum_probs=36.4
Q ss_pred cccccCCCccHh----HHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALL----STEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~L----S~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++=.|+ +|.+ +..|++.|. +|+.++.+++.++...+.. . .. ..++.++++|+.++.
T Consensus 13 ~ilItGa-s~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~-~---~~-~~~~~~~~~Dl~~~~ 73 (256)
T PRK06124 13 VALVTGS-ARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAAL-R---AA-GGAAEALAFDIADEE 73 (256)
T ss_pred EEEEECC-CchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHH-H---hc-CCceEEEEccCCCHH
Confidence 4544454 4433 344666775 7999999998877654432 1 11 236889999998876
No 367
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=58.24 E-value=54 Score=32.02 Aligned_cols=39 Identities=21% Similarity=0.049 Sum_probs=25.7
Q ss_pred ccccCCCc--cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 117 LQEDFCGT--ALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 117 LLEl~CGT--G~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
|.=+|||. +.++..|++.|...+|+++|.+++.++.+++
T Consensus 9 I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~ 49 (307)
T PRK07502 9 VALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE 49 (307)
T ss_pred EEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Confidence 33345554 3444555666754579999999998887764
No 368
>PRK06701 short chain dehydrogenase; Provisional
Probab=57.94 E-value=54 Score=31.46 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=34.6
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHH-HHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEA-LEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~em-L~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=.|++.| .++..|++.|. +|+.++.+.+. +...... .. . ...++.++..|+.+..
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~-~~---~-~~~~~~~~~~Dl~~~~ 109 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQR-VE---K-EGVKCLLIPGDVSDEA 109 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHH-HH---h-cCCeEEEEEccCCCHH
Confidence 4555665553 35666778885 68888887532 2221111 11 1 1247889999998876
No 369
>PRK06128 oxidoreductase; Provisional
Probab=57.71 E-value=68 Score=30.74 Aligned_cols=58 Identities=9% Similarity=-0.014 Sum_probs=32.8
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHH--HHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALE--WCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~--~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|++.| .++..|++.|+ +|+.++++.+... -..+. +.. .+.++.++++|+.++.
T Consensus 57 ~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~Dl~~~~ 119 (300)
T PRK06128 57 KALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQL----IQA-EGRKAVALPGDLKDEA 119 (300)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHH----HHH-cCCeEEEEecCCCCHH
Confidence 3555564443 25566778885 6888777653221 11111 111 1236788999998876
No 370
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.57 E-value=1.2e+02 Score=28.38 Aligned_cols=57 Identities=7% Similarity=-0.117 Sum_probs=34.1
Q ss_pred cccccCCCc--c---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGT--A---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGT--G---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=-|.++ | .++..|++.|. +|+.+|.+....+...+-. ..+ ..+.+++.|+.++.
T Consensus 12 ~~lItGas~g~GIG~a~a~~la~~G~--~v~l~~r~~~~~~~~~~~~-~~~-----~~~~~~~~D~~~~~ 73 (258)
T PRK07533 12 RGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLNDKARPYVEPLA-EEL-----DAPIFLPLDVREPG 73 (258)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCChhhHHHHHHHH-Hhh-----ccceEEecCcCCHH
Confidence 455566653 3 46677888885 6988899865433222211 111 12457889998876
No 371
>PRK06179 short chain dehydrogenase; Provisional
Probab=56.45 E-value=44 Score=31.02 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=32.1
Q ss_pred ccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=.||..|. ++.+|+++|. +|++++.+++.+. . ..++.++++|+.++.
T Consensus 7 vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~-----~--------~~~~~~~~~D~~d~~ 58 (270)
T PRK06179 7 ALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAA-----P--------IPGVELLELDVTDDA 58 (270)
T ss_pred EEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcc-----c--------cCCCeeEEeecCCHH
Confidence 4445643322 4556777885 6999999876542 1 125788999998876
No 372
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=56.25 E-value=79 Score=34.89 Aligned_cols=60 Identities=17% Similarity=0.022 Sum_probs=38.1
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=-|+++| .++..|++.|. +|+++|.+.+.++...+...... +..++.++++|++++.
T Consensus 416 vvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~---~~~~~~~v~~Dvtd~~ 478 (676)
T TIGR02632 416 VAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQF---GAGRAVALKMDVTDEQ 478 (676)
T ss_pred EEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCCcEEEEECCCCCHH
Confidence 4555555433 23455777885 79999999988766544422111 1235778999999876
No 373
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=56.01 E-value=82 Score=30.87 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=64.4
Q ss_pred CcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHH----HHHHHHhccccccCCCCcceEEEeccCCCchhhhhcccchh
Q 045407 115 LHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEA----LEWCMENNLNKVGADGYSRISLFHGNVLQPLEAKLVRYEPQ 190 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~em----L~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~ 190 (382)
.+||=||.-+|......+.--....+.||..|+.+ |..|+++. +|-=+-+|.+.|..-+-
T Consensus 78 ~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~----------Ni~PIL~DA~~P~~Y~~------ 141 (231)
T COG1889 78 SKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP----------NIIPILEDARKPEKYRH------ 141 (231)
T ss_pred CEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC----------CceeeecccCCcHHhhh------
Confidence 47889998888776666654445579999999865 55565542 45556678887762100
Q ss_pred hhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCC
Q 045407 191 KLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKG 270 (382)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pG 270 (382)
+ -+.+|+|.+=- ..+.+..-...++...|+ +|
T Consensus 142 -------~----------------------------------Ve~VDviy~DV------AQp~Qa~I~~~Na~~FLk-~~ 173 (231)
T COG1889 142 -------L----------------------------------VEKVDVIYQDV------AQPNQAEILADNAEFFLK-KG 173 (231)
T ss_pred -------h----------------------------------cccccEEEEec------CCchHHHHHHHHHHHhcc-cC
Confidence 1 35688886643 445566667778899998 66
Q ss_pred cEEEE
Q 045407 271 GIFVM 275 (382)
Q Consensus 271 GiFVf 275 (382)
|-.++
T Consensus 174 G~~~i 178 (231)
T COG1889 174 GYVVI 178 (231)
T ss_pred CeEEE
Confidence 64443
No 374
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.94 E-value=1.3e+02 Score=28.24 Aligned_cols=57 Identities=5% Similarity=-0.198 Sum_probs=32.4
Q ss_pred cccccCCCc--c---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGT--A---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGT--G---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++=-|++. | .++..|++.|. +|+.++.+....+.+.+- ..++ + ...+++.|+.++.
T Consensus 10 ~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l-~~~~---g--~~~~~~~Dv~~~~ 71 (260)
T PRK06603 10 KGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPL-AEEI---G--CNFVSELDVTNPK 71 (260)
T ss_pred EEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHH-HHhc---C--CceEEEccCCCHH
Confidence 455556654 3 36677888885 698888874322222221 1111 1 1235788999886
No 375
>PRK06194 hypothetical protein; Provisional
Probab=55.38 E-value=38 Score=31.75 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=32.9
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|. +|+.+|.+.+.++...+... .. +.++.++.+|+.++.
T Consensus 22 la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~-~~~~~~~~~D~~d~~ 68 (287)
T PRK06194 22 FARIGAALGM--KLVLADVQQDALDRAVAELR----AQ-GAEVLGVRTDVSDAA 68 (287)
T ss_pred HHHHHHHCCC--EEEEEeCChHHHHHHHHHHH----hc-CCeEEEEECCCCCHH
Confidence 4556777885 69999999887765544321 11 246888999998875
No 376
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=55.20 E-value=58 Score=31.27 Aligned_cols=42 Identities=17% Similarity=0.035 Sum_probs=30.8
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..||-.|||. |.++..+|+.-.-..+++++.+++..+.+++.
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~ 209 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM 209 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc
Confidence 3455688887 77888888764212699999999998876653
No 377
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.12 E-value=85 Score=29.95 Aligned_cols=37 Identities=16% Similarity=-0.034 Sum_probs=31.6
Q ss_pred CcccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHH
Q 045407 115 LHLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALE 151 (382)
Q Consensus 115 ~~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~ 151 (382)
+.|||||-| ||+-+..+|..-+.+.|.-.|=..++++
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svr 68 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVR 68 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHH
Confidence 358999998 7777888888888889999999998886
No 378
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=54.99 E-value=12 Score=36.59 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=46.1
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccc--cccCC-CCcceEEEeccC
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLN--KVGAD-GYSRISLFHGNV 176 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~--kl~~d-~~~RI~l~~gDV 176 (382)
.+-|+|||-|-|.++|+-..|..-+.|+.|-...-++-+++.++ +..+. .+.+|.+++.|.
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na 126 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA 126 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc
Confidence 46799999999999999999999999999998888887777443 11111 244566776664
No 379
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=54.85 E-value=49 Score=35.81 Aligned_cols=42 Identities=19% Similarity=0.039 Sum_probs=31.9
Q ss_pred CCCcccccCCCcc-HhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 113 QPLHLQEDFCGTA-LLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 113 ~p~~LLEl~CGTG-~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
.|.+++=+|||.- +.++.+++. ....|+.+|.+++-++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~-lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANS-LGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHH
Confidence 3568888999987 555555554 23579999999999887776
No 380
>PRK06484 short chain dehydrogenase; Validated
Probab=54.71 E-value=1.2e+02 Score=31.31 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=37.0
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=-|++.| .++..|++.|. +|+.++.+++.++-..+.. + .++..+..|+.++.
T Consensus 272 ~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~----~~~~~~~~D~~~~~ 328 (520)
T PRK06484 272 VAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEAL----G----DEHLSVQADITDEA 328 (520)
T ss_pred EEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh----C----CceeEEEccCCCHH
Confidence 333455444 45667888885 7999999988876555432 1 25667899999886
No 381
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=54.53 E-value=22 Score=34.66 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=40.8
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHH---HHHHHHhcccc--ccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEA---LEWCMENNLNK--VGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~em---L~~A~e~~~~k--l~~d~~~RI~l~~gDV~~~~ 180 (382)
+|||.=||-|+=|.-++..|. +|+|+.-||-+ |..+.++.... +....-.||+++++|.++..
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L 145 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL 145 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC
T ss_pred EEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH
Confidence 799999999999999999986 69999999854 55666654331 00001248999999987765
No 382
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=54.21 E-value=1.1e+02 Score=29.37 Aligned_cols=42 Identities=17% Similarity=0.085 Sum_probs=30.1
Q ss_pred CcccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
..||-.||| .|..++.+|+.-....|++++.+.+.++.+++.
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~ 211 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA 211 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh
Confidence 345557876 477788888864323689999999888877754
No 383
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=54.05 E-value=1e+02 Score=28.41 Aligned_cols=58 Identities=7% Similarity=0.030 Sum_probs=38.0
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|=.|+++| .++..|++.|+ +|+.++.+.+.++-..... . .. ..++.++..|++++.
T Consensus 13 ~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l-~---~~-~~~~~~~~~D~~~~~ 73 (255)
T PRK06113 13 CAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEI-Q---QL-GGQAFACRCDITSEQ 73 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHH-H---hc-CCcEEEEEccCCCHH
Confidence 4566676555 34456777885 6999999988776443321 1 11 236888999999876
No 384
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.51 E-value=44 Score=30.20 Aligned_cols=57 Identities=12% Similarity=-0.015 Sum_probs=36.1
Q ss_pred ccccCCC--ccHh-HHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCG--TALL-STEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CG--TG~L-S~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=.|++ -|.. +..|++.|. +|+.+|.+++-++.+.+.... ...++.+++.|++++.
T Consensus 8 ~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~ 67 (253)
T PRK08217 8 IVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQEKLEEAVAECGA-----LGTEVRGYAANVTDEE 67 (253)
T ss_pred EEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEcCCCCHH
Confidence 4555653 2333 334566774 699999999877665543211 1237888999998875
No 385
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=53.23 E-value=1.3e+02 Score=27.44 Aligned_cols=56 Identities=7% Similarity=-0.053 Sum_probs=34.4
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++=.|+++| .++..|++.|+ +|++++.+. +....+. ..++ ..++.++..|+.++.
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~--~~~~~~~-~~~~----~~~~~~~~~D~~~~~ 65 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSE--PSETQQQ-VEAL----GRRFLSLTADLSDIE 65 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEEcCch--HHHHHHH-HHhc----CCceEEEECCCCCHH
Confidence 3555566554 25677788885 699999875 2221111 1111 136889999999876
No 386
>PLN02253 xanthoxin dehydrogenase
Probab=53.08 E-value=47 Score=31.11 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=32.1
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.+|.+++.++-..+. +. ...++.+++.|++++.
T Consensus 34 la~~l~~~G~--~v~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~Dl~d~~ 79 (280)
T PLN02253 34 IVRLFHKHGA--KVCIVDLQDDLGQNVCDS----LG--GEPNVCFFHCDVTVED 79 (280)
T ss_pred HHHHHHHcCC--EEEEEeCCHHHHHHHHHH----hc--CCCceEEEEeecCCHH
Confidence 4556777885 699999998776543332 11 1247889999999886
No 387
>PRK06483 dihydromonapterin reductase; Provisional
Probab=52.82 E-value=1.6e+02 Score=26.74 Aligned_cols=53 Identities=6% Similarity=-0.105 Sum_probs=32.5
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=.|++.| .++..|++.|. +|+.++.+++.+....+. ..+.++..|+.++.
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~----------~~~~~~~~D~~~~~ 59 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTHYPAIDGLRQ----------AGAQCIQADFSTNA 59 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchhHHHHHHH----------cCCEEEEcCCCCHH
Confidence 3455565543 25556777885 699999987644211111 12567899998876
No 388
>PRK07831 short chain dehydrogenase; Provisional
Probab=52.44 E-value=52 Score=30.48 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=34.4
Q ss_pred HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 126 LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 126 ~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++..|++.|. +|+.+|.+.+-++...+...... +..++.++++|+.++.
T Consensus 33 ~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~ 82 (262)
T PRK07831 33 ATARRALEEGA--RVVISDIHERRLGETADELAAEL---GLGRVEAVVCDVTSEA 82 (262)
T ss_pred HHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhc---CCceEEEEEccCCCHH
Confidence 45566777885 59999999887776655421111 2247889999998876
No 389
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=52.06 E-value=14 Score=38.48 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHh
Q 045407 99 SYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSD--------SRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 99 ~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g--------~~~tVvGVDLS~emL~~A~e~ 156 (382)
.++.+.+.+ .+...|..|+|+|-|+|.|+.-+++.- ...++.-|..|++.-+.=+++
T Consensus 64 ~~~~~~wq~-~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 64 EQFLQLWQE-LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred HHHHHHHHH-hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 456666665 356668899999999999998888765 134678889999877654444
No 390
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=52.01 E-value=87 Score=34.51 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=30.1
Q ss_pred HHHHHhCCCCeEEEEeCCHHHHHHHHHhccc-cc---cCCCCcceEEEeccCCCch
Q 045407 129 TEWLRSDSRRTAVGLDLDLEALEWCMENNLN-KV---GADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 129 ~elar~g~~~tVvGVDLS~emL~~A~e~~~~-kl---~~d~~~RI~l~~gDV~~~~ 180 (382)
..|++.|+ +|++++.+.+-+.-..+.... ++ +.....++.++.+|+.+..
T Consensus 98 r~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 98 RELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred HHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 45667775 699999998876533222100 01 1111236889999998765
No 391
>PRK13699 putative methylase; Provisional
Probab=51.94 E-value=20 Score=34.25 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhccCCCcEEEE
Q 045407 254 DLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 254 dL~~yFr~V~~~L~~pGGiFVf 275 (382)
=+...|++++++|+ |||++++
T Consensus 50 w~~~~l~E~~RVLK-pgg~l~i 70 (227)
T PRK13699 50 WLQPACNEMYRVLK-KDALMVS 70 (227)
T ss_pred HHHHHHHHHHHHcC-CCCEEEE
Confidence 35788999999999 8999885
No 392
>PRK06138 short chain dehydrogenase; Provisional
Probab=51.41 E-value=1.1e+02 Score=27.65 Aligned_cols=57 Identities=19% Similarity=0.032 Sum_probs=36.5
Q ss_pred cccccCCC--ccH-hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCG--TAL-LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CG--TG~-LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.||. .|. ++..|+++|. +|++++-+.+.+....+... ...++.++++|+.++.
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~ 66 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA------AGGRAFARQGDVGSAE 66 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh------cCCeEEEEEcCCCCHH
Confidence 35555653 233 3344666774 69999999887765444321 1246889999998876
No 393
>PRK07454 short chain dehydrogenase; Provisional
Probab=51.32 E-value=56 Score=29.71 Aligned_cols=58 Identities=7% Similarity=-0.015 Sum_probs=36.3
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++=.|+..|. ++.+|++.|. +|+.++.+++-+.-..+... . ...++.++++|+.++.
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~ 68 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELR----S-TGVKAAAYSIDLSNPE 68 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----h-CCCcEEEEEccCCCHH
Confidence 34555643322 4566677885 69999999876544333211 1 1247889999998876
No 394
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.10 E-value=1.6e+02 Score=27.67 Aligned_cols=56 Identities=7% Similarity=-0.164 Sum_probs=33.3
Q ss_pred cccccCCC----cc-HhHHHHHHhCCCCeEEEEeCC---HHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCG----TA-LLSTEWLRSDSRRTAVGLDLD---LEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CG----TG-~LS~elar~g~~~tVvGVDLS---~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|.+ -| .++..|++.|. +|+.++.+ .+.|+-..+.. . ..++.+++.|+.++.
T Consensus 9 ~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~~~~~~~~~~~~~~~----~---~~~~~~~~~Dv~d~~ 72 (257)
T PRK08594 9 TYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAGERLEKEVRELADTL----E---GQESLLLPCDVTSDE 72 (257)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCcccchHHHHHHHHHc----C---CCceEEEecCCCCHH
Confidence 34555654 23 24667788885 58888654 33444333221 1 136788999998876
No 395
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=50.82 E-value=85 Score=30.65 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=28.6
Q ss_pred CccHhHHHHHHhC---CCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 123 GTALLSTEWLRSD---SRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 123 GTG~LS~elar~g---~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
|||.++..+++.- ..++|+|+|.+...+.. -. . ...+.++.+|+++
T Consensus 9 atGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~--~~------~--~~~~~~~~~Dl~~ 57 (347)
T PRK11908 9 VNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD--LV------N--HPRMHFFEGDITI 57 (347)
T ss_pred CCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH--hc------c--CCCeEEEeCCCCC
Confidence 5677776665531 12589999988754321 11 1 1258899999973
No 396
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=50.35 E-value=1.3e+02 Score=29.51 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=29.6
Q ss_pred cccccCCCc-cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 116 HLQEDFCGT-ALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 116 ~LLEl~CGT-G~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.||=.|||+ |.+++.+|+.-.-..|+++|.+++-++.+++.
T Consensus 179 ~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~ 220 (358)
T TIGR03451 179 SVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF 220 (358)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence 455557754 67778888865322599999999999988653
No 397
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=50.03 E-value=54 Score=30.14 Aligned_cols=57 Identities=9% Similarity=-0.120 Sum_probs=36.7
Q ss_pred cccccCCCccH----hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL----LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~----LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=.|. +|. ++..|++.|+ +|++++.+++.++-..+.. . . .+.++.+++.|+.++.
T Consensus 12 ~vlItGa-~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i-~---~-~~~~~~~~~~D~~~~~ 72 (255)
T PRK07523 12 RALVTGS-SQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESL-K---G-QGLSAHALAFDVTDHD 72 (255)
T ss_pred EEEEECC-cchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHH-H---h-cCceEEEEEccCCCHH
Confidence 3555554 343 3445666785 6999999998776544332 1 1 1246889999998876
No 398
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=49.46 E-value=52 Score=30.48 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=33.5
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|+ +|+.++.+++.++-..+... .. .++.+++.||.++.
T Consensus 16 ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~----~~--~~~~~~~~Dv~d~~ 61 (259)
T PRK08340 16 VARELLKKGA--RVVISSRNEENLEKALKELK----EY--GEVYAVKADLSDKD 61 (259)
T ss_pred HHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH----hc--CCceEEEcCCCCHH
Confidence 5677788885 69999999988766554421 11 25788999998876
No 399
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=49.42 E-value=1.1e+02 Score=32.19 Aligned_cols=56 Identities=7% Similarity=-0.084 Sum_probs=39.9
Q ss_pred cccccCCCc-cHhHHH-HHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGT-ALLSTE-WLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGT-G~LS~e-lar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.||=+|||. |+-.+. ||+++- .+|+..|.|.+.++-+.+... .+++.++-|+.+.+
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~--------~~v~~~~vD~~d~~ 60 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIG--------GKVEALQVDAADVD 60 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhcc--------ccceeEEecccChH
Confidence 356788865 443333 355653 689999999999887776642 37888999998876
No 400
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=49.12 E-value=43 Score=30.24 Aligned_cols=88 Identities=25% Similarity=0.293 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhhccC-CCcEEEEeccCCCchhhhhHhhhccCCeEEEEeecccccccceEEEEEEEEeecccceeeeee
Q 045407 253 ADLVLYFKHVLHALSK-KGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKLRHAF 331 (382)
Q Consensus 253 ~dL~~yFr~V~~~L~~-pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~lr~~f 331 (382)
..+.+++..+...+.. .|-+|+-|++||+++....+.....+....+ +. ++|. ++-.++
T Consensus 43 ~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~~~~~~~~vi---------aG---vNLP--------mLle~~ 102 (143)
T COG2893 43 DLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLAMEGPRVEVI---------AG---VNLP--------MLLEAL 102 (143)
T ss_pred HHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHHhhCCCceEE---------ec---CCHH--------HHHHHH
Confidence 4577888888888853 3445555999999987655444333443211 11 1111 222222
Q ss_pred eeeEE--ecCHHHHHHHHHHcCCcEEEEEeccC
Q 045407 332 SYNWR--LWSLPEIKDCLEEAGFRSVHFWLREM 362 (382)
Q Consensus 332 sy~~R--lysl~EI~d~LeeAGF~~V~v~~r~~ 362 (382)
. +| -=+..++..-+.+.|...+..++...
T Consensus 103 ~--~r~~~~~~~e~~~~~~e~~~~~v~~~~~~~ 133 (143)
T COG2893 103 L--ARDEGMSLDELVAQAAESGRQGVKSLVAEL 133 (143)
T ss_pred h--cccccCCHHHHHHHHHHhcccceEEecccc
Confidence 2 23 33557899999999999999887544
No 401
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=48.99 E-value=26 Score=32.25 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 234 PARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 234 ~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
.++|+|+|++- . .+ ......|+ |||++|+|-
T Consensus 67 ~~~D~lva~d~--------~---~~-~~~~~~lk-~gg~ii~n~ 97 (197)
T PRK06853 67 GKADLLLAFEP--------L---EA-LRYLPYLK-KGGKVVVNT 97 (197)
T ss_pred CCCCEEEEeCH--------H---HH-HHHHHhcC-CCcEEEEEC
Confidence 37899999983 1 22 24556788 999999984
No 402
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=48.97 E-value=16 Score=32.31 Aligned_cols=26 Identities=23% Similarity=0.586 Sum_probs=19.8
Q ss_pred EecCHHHHHHHHHHcCCcEEEEEecc
Q 045407 336 RLWSLPEIKDCLEEAGFRSVHFWLRE 361 (382)
Q Consensus 336 Rlysl~EI~d~LeeAGF~~V~v~~r~ 361 (382)
+.-+..+++++|+++||..|..|++.
T Consensus 17 nki~MaeLr~~l~~~Gf~~V~Tyi~S 42 (137)
T PF08002_consen 17 NKIKMAELREALEDLGFTNVRTYIQS 42 (137)
T ss_dssp S---HHHHHHHHHHCT-EEEEEETTT
T ss_pred CcccHHHHHHHHHHcCCCCceEEEee
Confidence 34578999999999999999999854
No 403
>PRK07062 short chain dehydrogenase; Provisional
Probab=48.92 E-value=54 Score=30.35 Aligned_cols=60 Identities=13% Similarity=-0.078 Sum_probs=40.7
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=-|++.| .++..|++.|. +|+.++.+++-++.+.+..... ....++.++..|+.++.
T Consensus 10 ~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~ 72 (265)
T PRK07062 10 VAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREK---FPGARLLAARCDVLDEA 72 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhh---CCCceEEEEEecCCCHH
Confidence 4555676554 35666777885 6999999998887665543221 11246888999998876
No 404
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=48.77 E-value=53 Score=30.02 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=33.8
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|+ +|+.++.+++.++.+.+.... ...++.++++|+.++.
T Consensus 23 la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~ 69 (262)
T PRK13394 23 IALELARAGA--AVAIADLNQDGANAVADEINK-----AGGKAIGVAMDVTNED 69 (262)
T ss_pred HHHHHHHCCC--eEEEEeCChHHHHHHHHHHHh-----cCceEEEEECCCCCHH
Confidence 4556777885 699999999887766654311 1236888999998877
No 405
>PRK12744 short chain dehydrogenase; Provisional
Probab=48.02 E-value=76 Score=29.29 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=31.0
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCH----HHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDL----EALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~----emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=.|+++| .++..|++.|+ +|+.++.+. +.++-..+. +... ..++.+++.|+.++.
T Consensus 11 vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~----l~~~-~~~~~~~~~D~~~~~ 74 (257)
T PRK12744 11 VLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAA----VKAA-GAKAVAFQADLTTAA 74 (257)
T ss_pred EEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHH----HHHh-CCcEEEEecCcCCHH
Confidence 444555443 34556677775 577776532 223222211 1111 136889999998876
No 406
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=47.99 E-value=93 Score=30.46 Aligned_cols=40 Identities=18% Similarity=-0.027 Sum_probs=29.1
Q ss_pred cccccCCCc-cHhHHHHHHhCCCCeEEEEeC---CHHHHHHHHHh
Q 045407 116 HLQEDFCGT-ALLSTEWLRSDSRRTAVGLDL---DLEALEWCMEN 156 (382)
Q Consensus 116 ~LLEl~CGT-G~LS~elar~g~~~tVvGVDL---S~emL~~A~e~ 156 (382)
+|+=.|||+ |.+++.+|+.-. .+|++++. +++-+++|++.
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~~~~~~~ 218 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRG-FEVYVLNRRDPPDPKADIVEEL 218 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHc
Confidence 455557765 778888887653 57999987 78888877653
No 407
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=47.47 E-value=21 Score=35.30 Aligned_cols=35 Identities=17% Similarity=0.422 Sum_probs=25.6
Q ss_pred CCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 233 LPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 233 ~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
...+|+|++|+-. ++..++.+...|+ +||++|+|-
T Consensus 65 ~~~~D~lv~~~~~---------~~~~~~~~~~~l~-~gg~vi~n~ 99 (312)
T PRK14028 65 VKTPDVAVIFDDK---------LIDPMRFAIDAVK-PGGYVILNT 99 (312)
T ss_pred cCCCCEEEEeChh---------hhccccHHhcCcC-CCeEEEEeC
Confidence 4668999999843 2333334677998 999999985
No 408
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=47.30 E-value=65 Score=29.65 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=31.7
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.+|.+.+.++-..+.. . .++.++++|+.++.
T Consensus 22 ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~----~----~~~~~~~~D~~~~~ 65 (257)
T PRK07067 22 VAERYLAEGA--RVVIADIKPARARLAALEI----G----PAAIAVSLDVTRQD 65 (257)
T ss_pred HHHHHHHcCC--EEEEEcCCHHHHHHHHHHh----C----CceEEEEccCCCHH
Confidence 4556667785 7999999998776444331 1 25889999998877
No 409
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=46.86 E-value=36 Score=34.90 Aligned_cols=189 Identities=15% Similarity=0.077 Sum_probs=107.3
Q ss_pred HHHHHHHHHhh-CCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCC
Q 045407 99 SYLQKFFLIYV-GGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVL 177 (382)
Q Consensus 99 ~yl~~~f~~y~-ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~ 177 (382)
+|...+...-. ....|..+|=+|-|-|-...+-++.-.-..+.-+|+|...++..++-...-...-...+|.+.-||=-
T Consensus 106 ~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~ 185 (337)
T KOG1562|consen 106 AYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGF 185 (337)
T ss_pred cceeeeeccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHH
Confidence 55544433211 12336788889999998888888775555688899999888888776544222234568999999844
Q ss_pred CchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccEEEEccc-----hhcccCCh
Q 045407 178 QPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDIICAFNY-----SCCCLHKR 252 (382)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDiV~afn~-----S~~yL~~r 252 (382)
.+.. +....+||+|+-=.+ .+.-
T Consensus 186 ~fl~------------------------------------------------~~~~~~~dVii~dssdpvgpa~~l---- 213 (337)
T KOG1562|consen 186 LFLE------------------------------------------------DLKENPFDVIITDSSDPVGPACAL---- 213 (337)
T ss_pred HHHH------------------------------------------------HhccCCceEEEEecCCccchHHHH----
Confidence 3331 112466887764321 2221
Q ss_pred hHHHHHHHHHHhhccCCCcEEEE--eccC-CCchhhhhHh--hhccCCeEEEEeecccccccceEEEEEEEEeeccccee
Q 045407 253 ADLVLYFKHVLHALSKKGGIFVM--DLYG-GTSSEQKLRL--QRRFANFTYVWEQAEFDIIERKTRISLHFHLQKEQKKL 327 (382)
Q Consensus 253 ~dL~~yFr~V~~~L~~pGGiFVf--Dl~g-g~s~e~kl~~--~R~~~~~tyvWeq~~fD~~~~~~ri~L~F~~~~~~~~l 327 (382)
=...||.-|.++|+ +||+.++ |..- --.+....+. ...|+...|-|...+- ....++-.-+.+.. +.+..
T Consensus 214 -f~~~~~~~v~~aLk-~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~ttvPT-ypsg~igf~l~s~~-~~~~~- 288 (337)
T KOG1562|consen 214 -FQKPYFGLVLDALK-GDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAITTVPT-YPSGRIGFMLCSKL-KPDGK- 288 (337)
T ss_pred -HHHHHHHHHHHhhC-CCcEEEEecceehHHHHHHHHHHHhHHHhcCccceeeecCCC-CccceEEEEEeccc-CCCCC-
Confidence 13679999999999 9999988 3220 0001111111 1125778888887542 22333444444431 22212
Q ss_pred eeeeeeeEEecCHHHHHHHH
Q 045407 328 RHAFSYNWRLWSLPEIKDCL 347 (382)
Q Consensus 328 r~~fsy~~Rlysl~EI~d~L 347 (382)
|....|-++..|.-.+-
T Consensus 289 ---~~~p~n~i~~~e~~~l~ 305 (337)
T KOG1562|consen 289 ---YKTPGNPITCKEQLSLY 305 (337)
T ss_pred ---ccCCCCccCHHHHHhhh
Confidence 22334666766655444
No 410
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=46.76 E-value=1.4e+02 Score=27.04 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=26.1
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|+ +|++++.++ + ... ..++.+++.|+.++.
T Consensus 24 la~~l~~~G~--~v~~~~~~~--~---~~~---------~~~~~~~~~D~~~~~ 61 (252)
T PRK08220 24 VALAFVEAGA--KVIGFDQAF--L---TQE---------DYPFATFVLDVSDAA 61 (252)
T ss_pred HHHHHHHCCC--EEEEEecch--h---hhc---------CCceEEEEecCCCHH
Confidence 4445667785 699999887 1 111 136888999998876
No 411
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=46.55 E-value=75 Score=33.84 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHhhccCCCcEEEEe--ccCCCchh
Q 045407 251 KRADLVLYFKHVLHALSKKGGIFVMD--LYGGTSSE 284 (382)
Q Consensus 251 ~r~dL~~yFr~V~~~L~~pGGiFVfD--l~gg~s~e 284 (382)
+-.-+...-+.++..|+ +|=+.|+. +++|++-+
T Consensus 103 Dls~v~~aa~sIa~~L~-kG~LVIlEST~~PGTTe~ 137 (436)
T COG0677 103 DLSYVESAARSIAPVLK-KGDLVILESTTPPGTTEE 137 (436)
T ss_pred ChHHHHHHHHHHHHhcC-CCCEEEEecCCCCCcHHH
Confidence 33456777888999999 89999995 56777644
No 412
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=46.23 E-value=1.7e+02 Score=26.70 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=28.9
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
++..|++.|. +|+++|.+++.++-..+... ..+..++.++..|+..
T Consensus 28 la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~d~~~ 73 (247)
T PRK08945 28 AALTYARHGA--TVILLGRTEEKLEAVYDEIE----AAGGPQPAIIPLDLLT 73 (247)
T ss_pred HHHHHHHCCC--cEEEEeCCHHHHHHHHHHHH----hcCCCCceEEEecccC
Confidence 3345666774 79999999877654433321 1122467788888864
No 413
>PRK07024 short chain dehydrogenase; Provisional
Probab=45.83 E-value=74 Score=29.43 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=32.7
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|+ +|+.+|.+++.++-..+.. ... . ++.++.+|+.++.
T Consensus 18 la~~l~~~G~--~v~~~~r~~~~~~~~~~~~----~~~-~-~~~~~~~Dl~~~~ 63 (257)
T PRK07024 18 LAREYARQGA--TLGLVARRTDALQAFAARL----PKA-A-RVSVYAADVRDAD 63 (257)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHhc----ccC-C-eeEEEEcCCCCHH
Confidence 5566778885 6999999998876444332 111 2 7889999998876
No 414
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=45.69 E-value=25 Score=37.37 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=40.0
Q ss_pred cccccCCCccHhHHHHHHhCC----CCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCC
Q 045407 116 HLQEDFCGTALLSTEWLRSDS----RRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQ 178 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~----~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~ 178 (382)
+|.|.+||||.+.+.-++.-. +....|.++++.+++.|+-+..-. .-.+ .+...++|-+.
T Consensus 189 ~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh--gi~~-~~~i~~~dtl~ 252 (489)
T COG0286 189 SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH--GIEG-DANIRHGDTLS 252 (489)
T ss_pred eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh--CCCc-ccccccccccc
Confidence 588999999977555443321 256999999999999999986431 1111 34556666433
No 415
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=45.65 E-value=2e+02 Score=25.71 Aligned_cols=57 Identities=12% Similarity=-0.074 Sum_probs=35.2
Q ss_pred cccccCCCccHhHH----HHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLST----EWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~----elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=.|+ +|.++. .|+++|+ +|++++-++..++....... . ...++.++..|+.++.
T Consensus 7 ~ilItGa-sg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~ 67 (246)
T PRK05653 7 TALVTGA-SRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELR----A-AGGEARVLVFDVSDEA 67 (246)
T ss_pred EEEEECC-CcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHH----h-cCCceEEEEccCCCHH
Confidence 3443443 555444 4466675 69999999877654333211 1 1236889999998876
No 416
>PRK07478 short chain dehydrogenase; Provisional
Probab=45.56 E-value=68 Score=29.47 Aligned_cols=57 Identities=11% Similarity=-0.034 Sum_probs=37.6
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=-|++.| .++..|++.|. +|+.++.+++-++...++.. . .+.++.++..|+.++.
T Consensus 9 ~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~ 68 (254)
T PRK07478 9 AIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIR----A-EGGEAVALAGDVRDEA 68 (254)
T ss_pred EEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----h-cCCcEEEEEcCCCCHH
Confidence 444455443 25566777885 69999999987776554421 1 1246888999998876
No 417
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=45.55 E-value=86 Score=30.19 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=25.6
Q ss_pred cCCCc--cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 120 DFCGT--ALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 120 l~CGT--G~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
+|||. +.++..|++.|. +|++.|.+++.++.+.+
T Consensus 8 iG~G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~~~~~ 43 (296)
T PRK11559 8 IGLGIMGKPMSKNLLKAGY--SLVVYDRNPEAVAEVIA 43 (296)
T ss_pred EccCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHHHH
Confidence 47775 457788888885 69999999988775543
No 418
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.83 E-value=2e+02 Score=25.85 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=32.6
Q ss_pred CccHhHHH----HHHhCCCCeEEEE-eCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 123 GTALLSTE----WLRSDSRRTAVGL-DLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 123 GTG~LS~e----lar~g~~~tVvGV-DLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|||.++.. |++.|. +|+.+ +.+++-++...+... . ...++.++..|+.++.
T Consensus 13 asg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~ 68 (247)
T PRK05565 13 ASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIK----E-EGGDAIAVKADVSSEE 68 (247)
T ss_pred CCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH----h-cCCeEEEEECCCCCHH
Confidence 45555554 455664 68888 998877654443321 1 1246899999998886
No 419
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=44.82 E-value=1.1e+02 Score=32.72 Aligned_cols=62 Identities=8% Similarity=-0.052 Sum_probs=41.5
Q ss_pred CcccccCCCccHhHHHHHHh-CCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLSTEWLRS-DSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~-g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|||+++-+|-=++..|.. .-+.-+++.|-+..-|..-.++. ..+| .........|+++++
T Consensus 243 ERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~-~rlG---v~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 243 ERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANL-HRLG---VTNTIVSNYDGREFP 305 (460)
T ss_pred CeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHH-HHhC---CCceEEEccCccccc
Confidence 47999988877655554432 11246999999998887766653 3343 345667778888765
No 420
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=44.71 E-value=1.3e+02 Score=29.32 Aligned_cols=40 Identities=15% Similarity=0.013 Sum_probs=29.3
Q ss_pred cccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 116 HLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 116 ~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
+||=.||| .|.+++.+|+.-- .+|++++.+++-++.|++-
T Consensus 168 ~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 168 RLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALAL 208 (329)
T ss_pred EEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHh
Confidence 45555654 5667778887643 5799999999999888774
No 421
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=44.65 E-value=46 Score=31.62 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=34.8
Q ss_pred cCCCc--cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 120 DFCGT--ALLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 120 l~CGT--G~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|||. ..++..|.+.|. .|+.+|-+++.++...... .-...+++|-.++.
T Consensus 6 iG~G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~~~~---------~~~~~v~gd~t~~~ 57 (225)
T COG0569 6 IGAGRVGRSVARELSEEGH--NVVLIDRDEERVEEFLADE---------LDTHVVIGDATDED 57 (225)
T ss_pred ECCcHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHhhhh---------cceEEEEecCCCHH
Confidence 45553 445566677775 6999999999987644321 13568899988877
No 422
>PRK06914 short chain dehydrogenase; Provisional
Probab=44.30 E-value=1.8e+02 Score=27.08 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=31.2
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|+ .|++++-+++-++-..+.. ...+ ...++.++.+|+.++.
T Consensus 19 la~~l~~~G~--~V~~~~r~~~~~~~~~~~~-~~~~--~~~~~~~~~~D~~d~~ 67 (280)
T PRK06914 19 TTLELAKKGY--LVIATMRNPEKQENLLSQA-TQLN--LQQNIKVQQLDVTDQN 67 (280)
T ss_pred HHHHHHhCCC--EEEEEeCCHHHHHHHHHHH-HhcC--CCCceeEEecCCCCHH
Confidence 3445677774 6999999887665433221 1011 1247899999998876
No 423
>PRK07060 short chain dehydrogenase; Provisional
Probab=44.26 E-value=1.8e+02 Score=26.20 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=25.5
Q ss_pred HHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 130 EWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 130 elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+++.|+ +|+.++-+++.++.-.+.. .+.++.+|+.++.
T Consensus 28 ~l~~~g~--~V~~~~r~~~~~~~~~~~~----------~~~~~~~D~~~~~ 66 (245)
T PRK07060 28 ALAQRGA--RVVAAARNAAALDRLAGET----------GCEPLRLDVGDDA 66 (245)
T ss_pred HHHHCCC--EEEEEeCCHHHHHHHHHHh----------CCeEEEecCCCHH
Confidence 4455664 7999999988765433221 2457788987765
No 424
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=44.24 E-value=35 Score=35.19 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=37.4
Q ss_pred cCCCccHhHHHHHHhCCCCeEEEEeC----CHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 120 DFCGTALLSTEWLRSDSRRTAVGLDL----DLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 120 l~CGTG~LS~elar~g~~~tVvGVDL----S~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
-+||+-. +++|+++|+ .|++||. ..++|..+++-. + .+.+|.|.++|+++..
T Consensus 12 GyiGsht-~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~----~--~~~~v~f~~~Dl~D~~ 67 (343)
T KOG1371|consen 12 GYIGSHT-VLALLKRGY--GVVIVDNLNNSYLESLKRVRQLL----G--EGKSVFFVEGDLNDAE 67 (343)
T ss_pred cceehHH-HHHHHhCCC--cEEEEecccccchhHHHHHHHhc----C--CCCceEEEEeccCCHH
Confidence 3677765 488999996 5999996 345555544443 1 2568999999999876
No 425
>PRK07774 short chain dehydrogenase; Provisional
Probab=44.12 E-value=1.5e+02 Score=26.95 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 128 STEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 128 S~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..|++.|+ +|++++.+++.+....+.. . .. ..++.++..|+.+..
T Consensus 23 a~~l~~~g~--~vi~~~r~~~~~~~~~~~~-~---~~-~~~~~~~~~Dl~~~~ 68 (250)
T PRK07774 23 AEALAREGA--SVVVADINAEGAERVAKQI-V---AD-GGTAIAVQVDVSDPD 68 (250)
T ss_pred HHHHHHCCC--EEEEEeCCHHHHHHHHHHH-H---hc-CCcEEEEEcCCCCHH
Confidence 344556774 7999999987664433321 1 11 135778899998776
No 426
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=44.06 E-value=1e+02 Score=28.61 Aligned_cols=58 Identities=9% Similarity=-0.059 Sum_probs=39.1
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|++.| .++..|++.|+ +|+.++.+++-++...+... . .+.++.+++.|+.++.
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~Dl~~~~ 72 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYR----E-LGIEAHGYVCDVTDED 72 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH----h-cCCceEEEEcCCCCHH
Confidence 3555565543 35666788885 69999999988765554421 1 1237889999998876
No 427
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=43.55 E-value=1.5e+02 Score=28.04 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=28.3
Q ss_pred cccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 116 HLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 116 ~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.||=.|+| .|.+++.+|+.---..|+++|.+++-++.|++.
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 34444654 466777788764322499999999999888774
No 428
>PRK08219 short chain dehydrogenase; Provisional
Probab=43.49 E-value=1.6e+02 Score=26.17 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=27.7
Q ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 128 STEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 128 S~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..|+++ ++|++++.+++.++...+.. ..+.++++|+.++.
T Consensus 20 ~~~l~~~---~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~D~~~~~ 60 (227)
T PRK08219 20 ARELAPT---HTLLLGGRPAERLDELAAEL---------PGATPFPVDLTDPE 60 (227)
T ss_pred HHHHHhh---CCEEEEeCCHHHHHHHHHHh---------ccceEEecCCCCHH
Confidence 3345555 46999999987765443321 14678999998875
No 429
>PRK05876 short chain dehydrogenase; Provisional
Probab=43.26 E-value=75 Score=30.20 Aligned_cols=57 Identities=16% Similarity=0.012 Sum_probs=37.3
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=-|+++| .++..|++.|+ +|+.+|.+++-|+-..+.. ... +.++.+++.|+.++.
T Consensus 9 vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l----~~~-~~~~~~~~~Dv~d~~ 68 (275)
T PRK05876 9 AVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHL----RAE-GFDVHGVMCDVRHRE 68 (275)
T ss_pred EEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH----Hhc-CCeEEEEeCCCCCHH
Confidence 444455443 35566778885 6999999988776544332 111 236888999998876
No 430
>CHL00194 ycf39 Ycf39; Provisional
Probab=43.24 E-value=1.5e+02 Score=28.70 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=30.2
Q ss_pred CCCccHhHH----HHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 121 FCGTALLST----EWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 121 ~CGTG~LS~----elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
..|||.++. .|+++|+ +|++++-++.-...-. . ..+.++.+|++++.
T Consensus 6 tGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~~~l~--------~---~~v~~v~~Dl~d~~ 56 (317)
T CHL00194 6 IGATGTLGRQIVRQALDEGY--QVRCLVRNLRKASFLK--------E---WGAELVYGDLSLPE 56 (317)
T ss_pred ECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHhhhHh--------h---cCCEEEECCCCCHH
Confidence 456776555 4556674 7999998864321100 1 24789999998876
No 431
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=43.04 E-value=79 Score=29.12 Aligned_cols=56 Identities=13% Similarity=-0.121 Sum_probs=36.0
Q ss_pred ccccCCCccHh----HHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTALL----STEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~L----S~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=.|+ +|-+ +..|++.|+ +|+.++.+.+-++...+.. . . ...++.++++|+.++.
T Consensus 15 ilItGa-~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i-~---~-~~~~~~~~~~Dl~d~~ 74 (259)
T PRK08213 15 ALVTGG-SRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHL-E---A-LGIDALWIAADVADEA 74 (259)
T ss_pred EEEECC-CchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHH-H---h-cCCeEEEEEccCCCHH
Confidence 444553 3333 344566675 6999999998777555432 1 1 1247889999998876
No 432
>PRK07063 short chain dehydrogenase; Provisional
Probab=42.81 E-value=81 Score=29.07 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=39.9
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=-|+++| .++..|++.|. +|+.+|.+++.++-..+..... ....++.+++.|+.++.
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~ 71 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARD---VAGARVLAVPADVTDAA 71 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---cCCceEEEEEccCCCHH
Confidence 4555566543 25667788885 6999999998876555442110 01247889999998876
No 433
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=42.37 E-value=77 Score=28.74 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=31.2
Q ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 128 STEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 128 S~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..|++.|+ +|+.++.+.+.+....+.. . . ...++.++.+|+.++.
T Consensus 20 a~~l~~~g~--~v~~~~r~~~~~~~~~~~~-~---~-~~~~~~~~~~d~~~~~ 65 (250)
T TIGR03206 20 CRRFAEEGA--KVAVFDLNREAAEKVAADI-R---A-KGGNAQAFACDITDRD 65 (250)
T ss_pred HHHHHHCCC--EEEEecCCHHHHHHHHHHH-H---h-cCCcEEEEEcCCCCHH
Confidence 344566674 7999999998776544332 1 1 1236889999998876
No 434
>PRK06196 oxidoreductase; Provisional
Probab=41.58 E-value=89 Score=30.18 Aligned_cols=54 Identities=2% Similarity=-0.122 Sum_probs=36.5
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|++.|. ++..|+++|+ +|++++.+++.++-..+.. .++.++.+|+.++.
T Consensus 28 ~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l---------~~v~~~~~Dl~d~~ 84 (315)
T PRK06196 28 TAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGI---------DGVEVVMLDLADLE 84 (315)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh---------hhCeEEEccCCCHH
Confidence 45556654432 4566777885 6999999988765443331 13778999998876
No 435
>PRK12743 oxidoreductase; Provisional
Probab=41.41 E-value=2.2e+02 Score=26.22 Aligned_cols=57 Identities=7% Similarity=-0.204 Sum_probs=31.9
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEe-CCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLD-LDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVD-LS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+|=.|+++| .++..|++.|. +|+.++ .+.+.++...+.. .+ .+.++.++..|+.++.
T Consensus 5 vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~Dl~~~~ 65 (256)
T PRK12743 5 AIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEV-RS----HGVRAEIRQLDLSDLP 65 (256)
T ss_pred EEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHH-Hh----cCCceEEEEccCCCHH
Confidence 444454332 24455667775 688775 4554444333221 11 1247889999998876
No 436
>PRK08862 short chain dehydrogenase; Provisional
Probab=41.27 E-value=75 Score=29.49 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=41.4
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++=.|++.|. ++..|++.|. +|+.++.+++.|+-..+.... . +..+..++.|+.++.
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~-~----~~~~~~~~~D~~~~~ 67 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSA-L----TDNVYSFQLKDFSQE 67 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHh-c----CCCeEEEEccCCCHH
Confidence 45566777765 7888999996 699999999988765544211 1 135677888998776
No 437
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=40.88 E-value=1.1e+02 Score=29.53 Aligned_cols=39 Identities=5% Similarity=-0.147 Sum_probs=26.1
Q ss_pred cccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 045407 116 HLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCM 154 (382)
Q Consensus 116 ~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~ 154 (382)
.++=.||| .|.+++.||+.-.-..|+++|.+++.|+.|.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 34445776 4778888887633235778899988776554
No 438
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=40.78 E-value=25 Score=34.26 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHhhccCCCcEEEE-ecc
Q 045407 252 RADLVLYFKHVLHALSKKGGIFVM-DLY 278 (382)
Q Consensus 252 r~dL~~yFr~V~~~L~~pGGiFVf-Dl~ 278 (382)
..-...+++.|+.+|+ |||+|++ |..
T Consensus 142 ~~~A~~vna~vf~~LK-PGGv~~V~dH~ 168 (238)
T COG4798 142 PATAAKVNAAVFKALK-PGGVYLVEDHR 168 (238)
T ss_pred cchHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 5677889999999999 9999998 543
No 439
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=40.69 E-value=2.9e+02 Score=27.06 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=28.6
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|+ +|++++-++.......... .. ..++.++.+|++++.
T Consensus 26 l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~----~~--~~~~~~~~~Dl~~~~ 71 (353)
T PLN02896 26 LVKLLLQRGY--TVHATLRDPAKSLHLLSKW----KE--GDRLRLFRADLQEEG 71 (353)
T ss_pred HHHHHHHCCC--EEEEEeCChHHHHHHHHhh----cc--CCeEEEEECCCCCHH
Confidence 3344556774 7999988875443322211 11 247889999998876
No 440
>PLN02427 UDP-apiose/xylose synthase
Probab=40.59 E-value=1.5e+02 Score=29.53 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=33.7
Q ss_pred CCcccccCCCccHhHHHHHH----hCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 114 PLHLQEDFCGTALLSTEWLR----SDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 114 p~~LLEl~CGTG~LS~elar----~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|.+|| +--|||.++..+++ +| .++|+++|.+..-+........ ..-..++.++.+|++++.
T Consensus 14 ~~~Vl-VTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~~~~~----~~~~~~~~~~~~Dl~d~~ 78 (386)
T PLN02427 14 PLTIC-MIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLLEPDT----VPWSGRIQFHRINIKHDS 78 (386)
T ss_pred CcEEE-EECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhhcccc----ccCCCCeEEEEcCCCChH
Confidence 33454 33456666555544 43 1479999987654432111100 001136899999998875
No 441
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=40.53 E-value=2e+02 Score=26.57 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=30.6
Q ss_pred CcccccCCCc-cHhHHHHHHhCCCCe-EEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCGT-ALLSTEWLRSDSRRT-AVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CGT-G~LS~elar~g~~~t-VvGVDLS~emL~~A~e~ 156 (382)
..||=.|||. |..++.+|+.-. .+ |++++.+++.++.|++.
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEAL 141 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHc
Confidence 3455568876 777788887643 45 99999999999877764
No 442
>PRK06197 short chain dehydrogenase; Provisional
Probab=40.49 E-value=99 Score=29.61 Aligned_cols=49 Identities=6% Similarity=-0.097 Sum_probs=32.7
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|. +|+.++.+++.++-+.+..... ....++.+++.|+.++.
T Consensus 32 ~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 32 TAAALAAKGA--HVVLAVRNLDKGKAAAARITAA---TPGADVTLQELDLTSLA 80 (306)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh---CCCCceEEEECCCCCHH
Confidence 3445677885 6999999988776554432211 11247889999999887
No 443
>PRK07814 short chain dehydrogenase; Provisional
Probab=40.17 E-value=89 Score=29.08 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=31.6
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|. +|++++.+++-++...+... . .+.++.++..|+.++.
T Consensus 26 ~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~----~-~~~~~~~~~~D~~~~~ 72 (263)
T PRK07814 26 IALAFAEAGA--DVLIAARTESQLDEVAEQIR----A-AGRRAHVVAADLAHPE 72 (263)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----h-cCCcEEEEEccCCCHH
Confidence 3344566774 79999999887664443321 1 1247889999998876
No 444
>PRK05854 short chain dehydrogenase; Provisional
Probab=40.06 E-value=88 Score=30.43 Aligned_cols=59 Identities=8% Similarity=-0.111 Sum_probs=38.7
Q ss_pred ccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=-|++.|. ++..|++.|. +|+.++.+.+-++-+.+..... .+..++.+++.|+.++.
T Consensus 17 ~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~---~~~~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 17 AVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTA---VPDAKLSLRALDLSSLA 78 (313)
T ss_pred EEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh---CCCCceEEEEecCCCHH
Confidence 4444555443 5566778884 7999999988776555442211 12246889999999887
No 445
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.00 E-value=2.2e+02 Score=25.78 Aligned_cols=47 Identities=13% Similarity=-0.133 Sum_probs=27.5
Q ss_pred hHHHHHHhCCCCeEEEE-eCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGL-DLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGV-DLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|+ +|+.+ +-+.+.++-..+... . .+.++.++.+|+.++.
T Consensus 20 ~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~ 67 (250)
T PRK08063 20 IALRLAEEGY--DIAVNYARSRKAAEETAEEIE----A-LGRKALAVKANVGDVE 67 (250)
T ss_pred HHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH----h-cCCeEEEEEcCCCCHH
Confidence 4455677775 57664 556655543322211 1 1236889999998876
No 446
>PRK06172 short chain dehydrogenase; Provisional
Probab=39.68 E-value=89 Score=28.61 Aligned_cols=58 Identities=10% Similarity=-0.041 Sum_probs=37.7
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|+++|. ++..|++.|. +|+.++.+++-++...+.. .. ...++.++.+|+.++.
T Consensus 9 ~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~-~~----~~~~~~~~~~D~~~~~ 69 (253)
T PRK06172 9 VALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALI-RE----AGGEALFVACDVTRDA 69 (253)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHH-Hh----cCCceEEEEcCCCCHH
Confidence 45556654432 4456777774 6999999988776544432 11 1246889999998876
No 447
>PRK06500 short chain dehydrogenase; Provisional
Probab=39.47 E-value=1e+02 Score=27.97 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=30.9
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|+ +|++++.+.+.+....+.. ..++.+++.|+.++.
T Consensus 22 la~~l~~~g~--~v~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~ 65 (249)
T PRK06500 22 TARQFLAEGA--RVAITGRDPASLEAARAEL--------GESALVIRADAGDVA 65 (249)
T ss_pred HHHHHHHCCC--EEEEecCCHHHHHHHHHHh--------CCceEEEEecCCCHH
Confidence 4556777785 6999999987665444332 136788999998876
No 448
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=39.04 E-value=45 Score=30.48 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 234 PARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 234 ~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
...|+++|++-.. ++ .....|+ |||++|+|-
T Consensus 66 ~~~D~lva~d~~~-----------~~-~~~~~l~-~gg~ii~ns 96 (197)
T PRK06274 66 GQADLLLALEPAE-----------VA-RNLHFLK-KGGKIIVNA 96 (197)
T ss_pred CCCCEEEEcCHHH-----------HH-HHHhhcC-CCcEEEEEC
Confidence 5789999998442 12 3356798 999999985
No 449
>PRK12829 short chain dehydrogenase; Provisional
Probab=38.90 E-value=99 Score=28.28 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=35.9
Q ss_pred CcccccCCCccHhH----HHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 115 LHLQEDFCGTALLS----TEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 115 ~~LLEl~CGTG~LS----~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++|=.|++ |.++ ..|+++|+ +|++++.+++.++...+... . .++.++.+|+.++.
T Consensus 12 ~~vlItGa~-g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~----~---~~~~~~~~D~~~~~ 71 (264)
T PRK12829 12 LRVLVTGGA-SGIGRAIAEAFAEAGA--RVHVCDVSEAALAATAARLP----G---AKVTATVADVADPA 71 (264)
T ss_pred CEEEEeCCC-CcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHh----c---CceEEEEccCCCHH
Confidence 356655553 3333 34566675 69999999987765443321 1 16788999998876
No 450
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=38.67 E-value=2e+02 Score=27.37 Aligned_cols=50 Identities=20% Similarity=0.140 Sum_probs=29.2
Q ss_pred HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 126 LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 126 ~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+...|+++|+ +|++++.+.......... . .+. ....++.++.+|++++.
T Consensus 19 ~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~-~-~~~-~~~~~~~~~~~Dl~~~~ 68 (322)
T PLN02662 19 WLVKLLLQRGY--TVKATVRDPNDPKKTEHL-L-ALD-GAKERLHLFKANLLEEG 68 (322)
T ss_pred HHHHHHHHCCC--EEEEEEcCCCchhhHHHH-H-hcc-CCCCceEEEeccccCcc
Confidence 34556667785 699998876543222111 0 000 01247899999999876
No 451
>PRK07035 short chain dehydrogenase; Provisional
Probab=38.66 E-value=88 Score=28.62 Aligned_cols=57 Identities=4% Similarity=-0.062 Sum_probs=37.3
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=.|+++| .++..|++.|+ +|++++.+++.++-..+... . ...++.+++.|+.++.
T Consensus 11 vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~ 70 (252)
T PRK07035 11 ALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIV----A-AGGKAEALACHIGEME 70 (252)
T ss_pred EEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----h-cCCeEEEEEcCCCCHH
Confidence 455566655 35556777785 79999999877654433321 1 1236788999998876
No 452
>PRK06198 short chain dehydrogenase; Provisional
Probab=38.40 E-value=2e+02 Score=26.34 Aligned_cols=47 Identities=9% Similarity=-0.064 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 128 STEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 128 S~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..|++.|.+ .|+.++.+++.+.-..... . . ...++.+++.|+.++.
T Consensus 23 a~~l~~~G~~-~V~~~~r~~~~~~~~~~~l-~---~-~~~~~~~~~~D~~~~~ 69 (260)
T PRK06198 23 ARAFAERGAA-GLVICGRNAEKGEAQAAEL-E---A-LGAKAVFVQADLSDVE 69 (260)
T ss_pred HHHHHHCCCC-eEEEEcCCHHHHHHHHHHH-H---h-cCCeEEEEEccCCCHH
Confidence 3345567752 3999999987665222211 1 1 1247888999998876
No 453
>PRK06398 aldose dehydrogenase; Validated
Probab=38.36 E-value=1.8e+02 Score=27.02 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=32.7
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=.|+..|. ++..|++.|+ +|+.++.+..-. .++.+++.|+.++.
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~----------------~~~~~~~~D~~~~~ 57 (258)
T PRK06398 8 VAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSY----------------NDVDYFKVDVSNKE 57 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCcccc----------------CceEEEEccCCCHH
Confidence 45666765553 6677778885 699998775210 15788999998876
No 454
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=38.24 E-value=3e+02 Score=24.72 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=27.6
Q ss_pred hHHHHHHhCCCCeEEEEeCCHH--HHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLE--ALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~e--mL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|++++.++. ..++.... .. ...++.++..|+.++.
T Consensus 18 la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~-----~~-~~~~~~~~~~D~~~~~ 65 (245)
T PRK12824 18 IARELLNDGY--RVIATYFSGNDCAKDWFEEY-----GF-TEDQVRLKELDVTDTE 65 (245)
T ss_pred HHHHHHHcCC--EEEEEeCCcHHHHHHHHHHh-----hc-cCCeEEEEEcCCCCHH
Confidence 3344556674 7999998854 22222211 11 1247899999998876
No 455
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=38.12 E-value=39 Score=31.14 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhhccCCCcEEEEe--ccCCCch
Q 045407 252 RADLVLYFKHVLHALSKKGGIFVMD--LYGGTSS 283 (382)
Q Consensus 252 r~dL~~yFr~V~~~L~~pGGiFVfD--l~gg~s~ 283 (382)
..-+....+.+..+|+ +|-++|+- +..|++-
T Consensus 96 ls~v~~a~~~i~~~l~-~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 96 LSYVESAIESIAPVLR-PGDLVVIESTVPPGTTE 128 (185)
T ss_dssp THHHHHHHHHHHHHHC-SCEEEEESSSSSTTHHH
T ss_pred HHHHHHHHHHHHHHHh-hcceEEEccEEEEeeeh
Confidence 3568889999999999 88888884 5566554
No 456
>PRK12937 short chain dehydrogenase; Provisional
Probab=38.08 E-value=2.3e+02 Score=25.48 Aligned_cols=58 Identities=7% Similarity=-0.107 Sum_probs=30.9
Q ss_pred cccccCCCcc--H-hHHHHHHhCCCCeEEEEeCCHH-HHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA--L-LSTEWLRSDSRRTAVGLDLDLE-ALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG--~-LS~elar~g~~~tVvGVDLS~e-mL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.||+.| . ++..|+++|+ +|+.+..+.. .++...+.. . . ...++.++..|+.++.
T Consensus 7 ~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-~---~-~~~~~~~~~~Dl~~~~ 68 (245)
T PRK12937 7 VAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEI-E---A-AGGRAIAVQADVADAA 68 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHH-H---h-cCCeEEEEECCCCCHH
Confidence 3445565333 2 3455667785 5777665432 222211111 1 1 1247899999998876
No 457
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.00 E-value=2.7e+02 Score=26.50 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=27.4
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.++.+....+.+.+- ..+++ .. ..++.|+.++.
T Consensus 23 iA~~la~~G~--~Vil~~r~~~~~~~~~~~-~~~~~----~~-~~~~~Dv~d~~ 68 (274)
T PRK08415 23 IAKACFEQGA--ELAFTYLNEALKKRVEPI-AQELG----SD-YVYELDVSKPE 68 (274)
T ss_pred HHHHHHHCCC--EEEEEecCHHHHHHHHHH-HHhcC----Cc-eEEEecCCCHH
Confidence 6677888885 699899885322222211 11111 12 46889999887
No 458
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=37.48 E-value=1.5e+02 Score=30.12 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=22.1
Q ss_pred CCccHhHHHHHHhCCCCeEEEEeCCHHHHH
Q 045407 122 CGTALLSTEWLRSDSRRTAVGLDLDLEALE 151 (382)
Q Consensus 122 CGTG~LS~elar~g~~~tVvGVDLS~emL~ 151 (382)
-|...++..|++.|+ +|++.|.+++.++
T Consensus 30 ~gG~~MA~~La~aG~--~V~v~Dr~~~~l~ 57 (342)
T PRK12557 30 YGGSRMAIEFAEAGH--DVVLAEPNRSILS 57 (342)
T ss_pred cCHHHHHHHHHhCCC--eEEEEECCHHHhh
Confidence 345567899999995 6999999998653
No 459
>PRK08263 short chain dehydrogenase; Provisional
Probab=37.43 E-value=1.1e+02 Score=28.59 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=31.1
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|. .|++++.+++.++...+.. ..++.+++.|+.++.
T Consensus 19 ~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~ 62 (275)
T PRK08263 19 WTEAALERGD--RVVATARDTATLADLAEKY--------GDRLLPLALDVTDRA 62 (275)
T ss_pred HHHHHHHCCC--EEEEEECCHHHHHHHHHhc--------cCCeeEEEccCCCHH
Confidence 4455667774 6999999998876544432 125788999998876
No 460
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=37.09 E-value=1.6e+02 Score=27.95 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=30.8
Q ss_pred CcccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 115 LHLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 115 ~~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
..||=.||| .|.++..+|+.-- ..|++++-+.+.++.+.+
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARK 204 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH
Confidence 345556887 8888888888732 479999999999988854
No 461
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=37.08 E-value=1.7e+02 Score=31.04 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=33.3
Q ss_pred CcccccCCCccHhHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHhc
Q 045407 115 LHLQEDFCGTALLSTEWLRS---D-SRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~---g-~~~tVvGVDLS~emL~~A~e~~ 157 (382)
..+.|.+||||.+..+..+. | ...+.+|-++.+.|...|+.+.
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 36889999999998765432 1 1246899999999999999873
No 462
>PRK07985 oxidoreductase; Provisional
Probab=36.93 E-value=1.4e+02 Score=28.80 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=33.7
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCH--HHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDL--EALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~--emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|.+.|. ++..|++.|. +|+.++.+. +-++-..+. .. . .+.++.+++.|+.++.
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~~~Dl~~~~ 113 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKI-IE---E-CGRKAVLLPGDLSDEK 113 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHH-HH---H-cCCeEEEEEccCCCHH
Confidence 45556654442 6677888885 688887653 223222111 11 1 1246788999998876
No 463
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=36.78 E-value=99 Score=28.87 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=36.1
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=.|++.| .++..|++.|. +|+.+|.+++.++-..+... . .+.++.+++.|+.++.
T Consensus 13 vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~Dl~~~~ 72 (278)
T PRK08277 13 AVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIK----A-AGGEALAVKADVLDKE 72 (278)
T ss_pred EEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH----h-cCCeEEEEECCCCCHH
Confidence 444454433 25566777885 69999999877654333321 1 1236889999998876
No 464
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=36.51 E-value=41 Score=25.68 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=31.0
Q ss_pred HHHHHhhccCCCcEEEEeccCCCchhhhhHhhhccCCeEEEEee
Q 045407 259 FKHVLHALSKKGGIFVMDLYGGTSSEQKLRLQRRFANFTYVWEQ 302 (382)
Q Consensus 259 Fr~V~~~L~~pGGiFVfDl~gg~s~e~kl~~~R~~~~~tyvWeq 302 (382)
++.|++++- |+..+++|.|++.+....++..+..+++ .|.|+
T Consensus 2 i~avr~~~g-~~~~l~vDan~~~~~~~a~~~~~~l~~~-~~iEe 43 (67)
T PF01188_consen 2 IRAVREAVG-PDIDLMVDANQAWTLEEAIRLARALEDY-EWIEE 43 (67)
T ss_dssp HHHHHHHHS-TTSEEEEE-TTBBSHHHHHHHHHHHGGG-SEEES
T ss_pred HHHHHHhhC-CCCeEEEECCCCCCHHHHHHHHHHcChh-heeec
Confidence 578899998 8999999999988877766666666665 44564
No 465
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=36.50 E-value=1.9e+02 Score=30.92 Aligned_cols=28 Identities=7% Similarity=-0.062 Sum_probs=21.5
Q ss_pred HhHHHHHHhCCCCeEEEEeCCHHHHHHH
Q 045407 126 LLSTEWLRSDSRRTAVGLDLDLEALEWC 153 (382)
Q Consensus 126 ~LS~elar~g~~~tVvGVDLS~emL~~A 153 (382)
.+++.||..|..++|+|+|++++-++.-
T Consensus 15 ~~A~~lA~~g~g~~V~gvD~~~~~v~~l 42 (473)
T PLN02353 15 PTMAVIALKCPDIEVVVVDISVPRIDAW 42 (473)
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHH
Confidence 4556677777667899999999887633
No 466
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=36.46 E-value=1.9e+02 Score=26.09 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCeEEEE-eCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 128 STEWLRSDSRRTAVGL-DLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 128 S~elar~g~~~tVvGV-DLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..|++.|. +|+.+ ..+++.+.-..... .+ ...++.++++|+.++.
T Consensus 18 ~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~D~~d~~ 64 (247)
T PRK09730 18 ALLLAQEGY--TVAVNYQQNLHAAQEVVNLI-TQ----AGGKAFVLQADISDEN 64 (247)
T ss_pred HHHHHHCCC--EEEEEeCCChHHHHHHHHHH-Hh----CCCeEEEEEccCCCHH
Confidence 445667775 57764 56665544322221 11 1236888999999887
No 467
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=36.45 E-value=1.1e+02 Score=28.45 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=36.5
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=.|+++| .++..|++.|. +|+.+|.+.+.++...+.. ..++.+++.|+.++.
T Consensus 8 vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~l~~~~--------~~~~~~~~~D~~~~~ 64 (262)
T TIGR03325 8 VLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSAAGLQELEAAH--------GDAVVGVEGDVRSLD 64 (262)
T ss_pred EEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHhhc--------CCceEEEEeccCCHH
Confidence 444555444 26667888885 6999999987775443321 136888999998875
No 468
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.40 E-value=3.6e+02 Score=26.14 Aligned_cols=42 Identities=12% Similarity=0.015 Sum_probs=30.1
Q ss_pred CcccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 115 LHLQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 115 ~~LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
.+||=.||| .|.+++.+|+.-.-..|+++|.+++-++++++.
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ 210 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY 210 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc
Confidence 345555766 567777788765323699999999999888763
No 469
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=36.31 E-value=1.9e+02 Score=29.67 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=73.1
Q ss_pred CcccccCCCccH----hHHHH-HH-h--------------CCCCeEEEEeCCH-----HHHHHHHHhc-----------c
Q 045407 115 LHLQEDFCGTAL----LSTEW-LR-S--------------DSRRTAVGLDLDL-----EALEWCMENN-----------L 158 (382)
Q Consensus 115 ~~LLEl~CGTG~----LS~el-ar-~--------------g~~~tVvGVDLS~-----emL~~A~e~~-----------~ 158 (382)
.+||-+|-|.|. |+..| .+ + .+.-+++.||+-+ ..|.-+.... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 689999999853 44444 10 0 1123799999865 2333333332 1
Q ss_pred ccccCCCCcceEEEeccCCCchhhhhcccchhhhhhccccccccCccccchhhhhhccccccCCCCCcCccCCCCCCccE
Q 045407 159 NKVGADGYSRISLFHGNVLQPLEAKLVRYEPQKLVRNISLEECDNTLETSTIESAVQDNFTASSGDNCSKQKSSLPARDI 238 (382)
Q Consensus 159 ~kl~~d~~~RI~l~~gDV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fDi 238 (382)
.+...+...+.|.|+||+.+....+ .. + +..+..++
T Consensus 168 -~~~~~~~~~~~F~~~DvL~~~~~~l--------~~---l--------------------------------l~~~~~~L 203 (315)
T PF11312_consen 168 -PLIEPDRFNVSFTQQDVLSLSEDDL--------KS---L--------------------------------LGPPSPDL 203 (315)
T ss_pred -ccCCccceeeeEEecccccCChHHH--------HH---H--------------------------------hccchhHH
Confidence 1222345679999999998873221 00 0 11235788
Q ss_pred EEEccchhc--ccCChhHHHHHHHHHHhhccCCCcEEEE-ecc
Q 045407 239 ICAFNYSCC--CLHKRADLVLYFKHVLHALSKKGGIFVM-DLY 278 (382)
Q Consensus 239 V~afn~S~~--yL~~r~dL~~yFr~V~~~L~~pGGiFVf-Dl~ 278 (382)
|+-+|+ .| |-.++..-++.|.++-..++ ||-++++ |-=
T Consensus 204 ITLlFT-lNELfs~s~~kTt~FLl~Lt~~~~-~GslLLVvDSp 244 (315)
T PF11312_consen 204 ITLLFT-LNELFSTSISKTTKFLLRLTDICP-PGSLLLVVDSP 244 (315)
T ss_pred HHHHHH-HHHHHhcChHHHHHHHHHHHhhcC-CCcEEEEEcCC
Confidence 877763 44 22467888999999999998 8998887 643
No 470
>PLN00198 anthocyanidin reductase; Provisional
Probab=36.24 E-value=2.5e+02 Score=27.23 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=28.1
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
|+..|++.|+ +|+++..+...+...... ..+. ...++.++++|++++.
T Consensus 25 l~~~L~~~g~--~V~~~~r~~~~~~~~~~~--~~~~--~~~~~~~~~~Dl~d~~ 72 (338)
T PLN00198 25 LIKLLLQKGY--AVNTTVRDPENQKKIAHL--RALQ--ELGDLKIFGADLTDEE 72 (338)
T ss_pred HHHHHHHCCC--EEEEEECCCCCHHHHHHH--HhcC--CCCceEEEEcCCCChH
Confidence 3445666775 698888876544322111 0011 1126889999998876
No 471
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.15 E-value=1.1e+02 Score=27.69 Aligned_cols=57 Identities=11% Similarity=-0.088 Sum_probs=36.3
Q ss_pred cccccCCCccHhHH----HHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTALLST----EWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~LS~----elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|+ ||.++. .|++.|. +|+.++.+++-++...... . . ...++.+++.|+.++.
T Consensus 9 ~vlVtG~-sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~-~---~-~~~~~~~~~~D~~~~~ 69 (239)
T PRK07666 9 NALITGA-GRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEV-E---A-YGVKVVIATADVSDYE 69 (239)
T ss_pred EEEEEcC-CchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH-H---H-hCCeEEEEECCCCCHH
Confidence 3444553 444444 4566675 7999999988776543332 1 1 1247889999998876
No 472
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.63 E-value=52 Score=31.64 Aligned_cols=35 Identities=11% Similarity=0.020 Sum_probs=27.2
Q ss_pred cCCC--ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 120 DFCG--TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 120 l~CG--TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
+|+| .+.++..|++.|+ +|+++|.+++.++.+++.
T Consensus 9 IG~G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~ 45 (282)
T PRK05808 9 IGAGTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLAT 45 (282)
T ss_pred EccCHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHH
Confidence 4666 4666777888885 699999999999877643
No 473
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.44 E-value=48 Score=32.46 Aligned_cols=39 Identities=10% Similarity=-0.076 Sum_probs=29.6
Q ss_pred ccccCCC--ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 117 LQEDFCG--TALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 117 LLEl~CG--TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
|-=+|+| .+.++..+++.|. .|+.+|.+++.|+-++++.
T Consensus 8 V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i 48 (286)
T PRK07819 8 VGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRI 48 (286)
T ss_pred EEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHH
Confidence 3335666 4566677788885 6999999999999877663
No 474
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=35.40 E-value=1.3e+02 Score=27.88 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=33.1
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.||.+|. ++..|++.|. +|+++|++.. ....+.. ..+ ..++..++.|+.+..
T Consensus 12 ~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~--~~~~~~~-~~~----~~~~~~~~~Dl~~~~ 70 (253)
T PRK08993 12 VAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEP--TETIEQV-TAL----GRRFLSLTADLRKID 70 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--EEEEecCcch--HHHHHHH-Hhc----CCeEEEEECCCCCHH
Confidence 35555665432 5566777885 6999998652 1111111 111 236788999998876
No 475
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=35.26 E-value=43 Score=32.53 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.9
Q ss_pred cccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHH
Q 045407 116 HLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEW 152 (382)
Q Consensus 116 ~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL~~ 152 (382)
+..|.|||+|.++..+.. . .++.-|+++++++.
T Consensus 28 ~yvEPF~Gggsv~l~~~~---~-~~~lND~n~~Li~~ 60 (266)
T TIGR00571 28 CLVEPFVGGGAVFFNLNP---K-RYLLNDINEDLINL 60 (266)
T ss_pred EEEEecCCcchhheeecC---c-EEEEecCCHHHHHH
Confidence 588999999998876543 2 48889999999875
No 476
>PRK06484 short chain dehydrogenase; Validated
Probab=35.16 E-value=1.1e+02 Score=31.56 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=38.5
Q ss_pred ccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 117 LQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 117 LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++=-|++.| .++..|++.|. +|+.++.+.+-|+...+.. + .++.+++.|+.++.
T Consensus 8 ~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~----~~~~~~~~D~~~~~ 64 (520)
T PRK06484 8 VLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSL----G----PDHHALAMDVSDEA 64 (520)
T ss_pred EEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh----C----CceeEEEeccCCHH
Confidence 444566655 56677888885 6999999998887554432 1 35778999998876
No 477
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=35.13 E-value=34 Score=33.67 Aligned_cols=65 Identities=15% Similarity=-0.022 Sum_probs=42.4
Q ss_pred CcccccCCCccHhHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHhccccccCCCC-cceEEEeccCCCchhhhh
Q 045407 115 LHLQEDFCGTALLSTEWLRSD-----SRRTAVGLDLDLEALEWCMENNLNKVGADGY-SRISLFHGNVLQPLEAKL 184 (382)
Q Consensus 115 ~~LLEl~CGTG~LS~elar~g-----~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~-~RI~l~~gDV~~~~~~~~ 184 (382)
..++|+|||.|.||..+++.- +...++-||-...=. .+-.+ +..+.. ..+.=+..|+.++.++++
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~----~~~~~~~~~~~R~riDI~dl~l~~~ 90 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNK----IRKDESEPKFERLRIDIKDLDLSKL 90 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhh----hhccCCCCceEEEEEEeeccchhhc
Confidence 468899999999999988876 456789999865222 11111 222211 246667788888886544
No 478
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=34.81 E-value=36 Score=30.32 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccC
Q 045407 234 PARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYG 279 (382)
Q Consensus 234 ~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~g 279 (382)
..+|++++++- ..+......|+ |||++|+|-..
T Consensus 56 ~~~Dilv~l~~------------~~~~~~~~~l~-~~g~vi~ns~~ 88 (173)
T PF01558_consen 56 GEADILVALDP------------EALERHLKGLK-PGGVVIINSSL 88 (173)
T ss_dssp SSESEEEESSH------------HHHHHCGTTCE-TTEEEEEETTT
T ss_pred CCCCEEEEcCH------------HHHHHHhcCcC-cCeEEEEECCC
Confidence 67999999951 22236677899 99999999753
No 479
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.79 E-value=3.6e+02 Score=25.57 Aligned_cols=57 Identities=4% Similarity=-0.217 Sum_probs=34.0
Q ss_pred cccccCCCc--c---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGT--A---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGT--G---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.+|=-|++. | .++..|++.|. +|+.++.+....+...+- ..+++ ...+++.|+.++.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~-~~~~g-----~~~~~~~Dv~d~~ 70 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGA--ELAFTYQGEALGKRVKPL-AESLG-----SDFVLPCDVEDIA 70 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCC--EEEEecCchHHHHHHHHH-HHhcC-----CceEEeCCCCCHH
Confidence 455556554 3 57788899995 699888876433322221 11111 1246889999886
No 480
>PRK08251 short chain dehydrogenase; Provisional
Probab=34.75 E-value=1.5e+02 Score=26.99 Aligned_cols=49 Identities=10% Similarity=-0.059 Sum_probs=32.8
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|++.|. +|+.++.+++.++-..+.... .....++.++++|+.++.
T Consensus 18 la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~ 66 (248)
T PRK08251 18 MAREFAAKGR--DLALCARRTDRLEELKAELLA---RYPGIKVAVAALDVNDHD 66 (248)
T ss_pred HHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHh---hCCCceEEEEEcCCCCHH
Confidence 4556677774 799999999887654433211 111247899999998875
No 481
>PRK06057 short chain dehydrogenase; Provisional
Probab=34.56 E-value=3.7e+02 Score=24.69 Aligned_cols=53 Identities=15% Similarity=-0.039 Sum_probs=33.0
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|+++| .++..+++.|+ +|+++|.++.-++-..+.. ...+++.|+.++.
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~----------~~~~~~~D~~~~~ 64 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGA--TVVVGDIDPEAGKAAADEV----------GGLFVPTDVTDED 64 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHc----------CCcEEEeeCCCHH
Confidence 3555666433 23455667774 7999999987665433331 1146788998876
No 482
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=34.39 E-value=3.4e+02 Score=24.31 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=29.5
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|+ .|+..+-+++-++-..... ..++.++..|+.+..
T Consensus 22 la~~l~~~g~--~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~ 65 (245)
T PRK12936 22 IARLLHAQGA--IVGLHGTRVEKLEALAAEL--------GERVKIFPANLSDRD 65 (245)
T ss_pred HHHHHHHCCC--EEEEEcCCHHHHHHHHHHh--------CCceEEEEccCCCHH
Confidence 4556778885 6888888877665332221 125788999998776
No 483
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=34.34 E-value=1.6e+02 Score=30.06 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=32.3
Q ss_pred ccCCCccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhc
Q 045407 119 EDFCGTALLSTEWLRSDSRRTAVGLDLDLEALEWCMENN 157 (382)
Q Consensus 119 El~CGTG~LS~elar~g~~~tVvGVDLS~emL~~A~e~~ 157 (382)
--+-|-|.+.+.|+|.-- .++++.=-+.+-++.|+++-
T Consensus 154 aAAGGVGlll~Ql~ra~~-a~tI~~asTaeK~~~akenG 191 (336)
T KOG1197|consen 154 AAAGGVGLLLCQLLRAVG-AHTIATASTAEKHEIAKENG 191 (336)
T ss_pred eccccHHHHHHHHHHhcC-cEEEEEeccHHHHHHHHhcC
Confidence 346788999999999864 68999999999999999973
No 484
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=34.28 E-value=77 Score=30.65 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=35.9
Q ss_pred cccccCCCccHhH--HHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccC
Q 045407 116 HLQEDFCGTALLS--TEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNV 176 (382)
Q Consensus 116 ~LLEl~CGTG~LS--~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV 176 (382)
++|=+|.|.-..- ..|++.|.+-+|++-++++++.+++... +|.+++.+.
T Consensus 27 ~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~-----------~i~~~~r~~ 78 (223)
T PRK05562 27 KVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYG-----------NLKLIKGNY 78 (223)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCC-----------CEEEEeCCC
Confidence 4666677765543 3577889888888889999998876532 578888664
No 485
>PRK08303 short chain dehydrogenase; Provisional
Probab=34.04 E-value=2.7e+02 Score=27.20 Aligned_cols=58 Identities=16% Similarity=-0.057 Sum_probs=35.4
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCCH----------HHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLDL----------EALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS~----------emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=-|++.|. ++..|++.|. +|+.++.+. +-++-..+.. . .. +.++.+++.|+.++.
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l-~---~~-~~~~~~~~~Dv~~~~ 80 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGA--TVYVTGRSTRARRSEYDRPETIEETAELV-T---AA-GGRGIAVQVDHLVPE 80 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEecccccccccccccchHHHHHHHH-H---hc-CCceEEEEcCCCCHH
Confidence 56666776552 5566778885 699998873 2333222211 1 11 236778999999876
No 486
>PRK06949 short chain dehydrogenase; Provisional
Probab=34.03 E-value=1.3e+02 Score=27.48 Aligned_cols=47 Identities=9% Similarity=-0.029 Sum_probs=32.0
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..+++.|. +|++++.+++.++...+.. .. . ..++.++.+|+.++.
T Consensus 25 ~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l-~~---~-~~~~~~~~~D~~~~~ 71 (258)
T PRK06949 25 FAQVLAQAGA--KVVLASRRVERLKELRAEI-EA---E-GGAAHVVSLDVTDYQ 71 (258)
T ss_pred HHHHHHHCCC--EEEEEeCCHHHHHHHHHHH-Hh---c-CCcEEEEEecCCCHH
Confidence 3445566674 7999999998887665542 11 1 236889999998765
No 487
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=33.96 E-value=74 Score=26.90 Aligned_cols=38 Identities=8% Similarity=0.028 Sum_probs=25.6
Q ss_pred ccCCCcc--HhHHHHH--HhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 119 EDFCGTA--LLSTEWL--RSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 119 El~CGTG--~LS~ela--r~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
|+|+..| ..++.++ +.++..+|++++-+|.+++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 6789999 6666664 567778899999999998887777
No 488
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=33.88 E-value=1.5e+02 Score=29.05 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=24.5
Q ss_pred cCCCc--cHhHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 045407 120 DFCGT--ALLSTEWLRSDSRRTAVGLDLDLEALEWCME 155 (382)
Q Consensus 120 l~CGT--G~LS~elar~g~~~tVvGVDLS~emL~~A~e 155 (382)
+|||. ..++..|++.|. +|++.|.+++.++...+
T Consensus 6 IGlG~mG~~la~~L~~~g~--~V~~~dr~~~~~~~l~~ 41 (298)
T TIGR00872 6 IGLGRMGANIVRRLAKRGH--DCVGYDHDQDAVKAMKE 41 (298)
T ss_pred EcchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHH
Confidence 35553 446677778884 69999999998776554
No 489
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=33.79 E-value=57 Score=29.61 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=22.2
Q ss_pred CCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEec
Q 045407 234 PARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDL 277 (382)
Q Consensus 234 ~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl 277 (382)
...|+++||+-...- .. .....|+ |||++|.|-
T Consensus 65 ~~~D~lva~~~~~~~---------~~-~~~~~l~-~gg~ii~d~ 97 (177)
T TIGR02175 65 YEPDYVVVLDPTLLK---------TV-NVTAGLK-EDGILIVNT 97 (177)
T ss_pred CCCCEEEEcCHHHhC---------cc-chhhCcC-CCeEEEEEC
Confidence 468999999843220 00 1345788 999999984
No 490
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=33.64 E-value=56 Score=31.65 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=28.4
Q ss_pred ccccCCC--ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 117 LQEDFCG--TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 117 LLEl~CG--TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
|-=+||| .+.++..|+++|. +|+.+|.+++.|+-+++.
T Consensus 6 I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~ 45 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMEL 45 (291)
T ss_pred EEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHH
Confidence 3335666 3456777888885 699999999999877664
No 491
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=33.39 E-value=57 Score=35.37 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=34.5
Q ss_pred CCCccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEE
Q 045407 233 LPARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVM 275 (382)
Q Consensus 233 ~~~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVf 275 (382)
..+||+|=|.. .|-.+.++-++...+-.+=+.|+ |||.+|+
T Consensus 425 PRTYDLlHA~~-lfs~~~~rC~~~~illEmDRILR-P~G~~ii 465 (506)
T PF03141_consen 425 PRTYDLLHADG-LFSLYKDRCEMEDILLEMDRILR-PGGWVII 465 (506)
T ss_pred Ccchhheehhh-hhhhhcccccHHHHHHHhHhhcC-CCceEEE
Confidence 45799998864 45555778899999999999999 9999999
No 492
>PRK08226 short chain dehydrogenase; Provisional
Probab=33.13 E-value=1.3e+02 Score=27.58 Aligned_cols=57 Identities=14% Similarity=0.026 Sum_probs=35.5
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+++=.|+..| .++..|++.|+ +|+.++.+....+.+.+-. . .+.++.++.+|+.++.
T Consensus 8 ~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~-----~-~~~~~~~~~~Dl~~~~ 67 (263)
T PRK08226 8 TALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELC-----G-RGHRCTAVVADVRDPA 67 (263)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHH-----H-hCCceEEEECCCCCHH
Confidence 3444454432 24556677785 6999999987554443321 1 1236788999998876
No 493
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=32.53 E-value=2.4e+02 Score=27.84 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=28.5
Q ss_pred ccccCCC-ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 117 LQEDFCG-TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 117 LLEl~CG-TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
||=.||| .|.+++.||+.---.+|+++|.+++-++.|++.
T Consensus 195 VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~ 235 (371)
T cd08281 195 VAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL 235 (371)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc
Confidence 4335665 477778888754212699999999999988753
No 494
>PRK07680 late competence protein ComER; Validated
Probab=32.21 E-value=3.3e+02 Score=26.04 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=27.5
Q ss_pred CccEEEEccchhcccCChhHHHHHHHHHHhhccCCCcEEEEeccCCCch
Q 045407 235 ARDIICAFNYSCCCLHKRADLVLYFKHVLHALSKKGGIFVMDLYGGTSS 283 (382)
Q Consensus 235 ~fDiV~afn~S~~yL~~r~dL~~yFr~V~~~L~~pGGiFVfDl~gg~s~ 283 (382)
..|+|+... +...+..+++.+..+|+ ++. +|+++.+|.+.
T Consensus 62 ~aDiVilav-------~p~~~~~vl~~l~~~l~-~~~-~iis~~ag~~~ 101 (273)
T PRK07680 62 QSDLIFICV-------KPLDIYPLLQKLAPHLT-DEH-CLVSITSPISV 101 (273)
T ss_pred hCCEEEEec-------CHHHHHHHHHHHHhhcC-CCC-EEEEECCCCCH
Confidence 457775443 34667788888888887 555 67788877653
No 495
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.04 E-value=4.3e+02 Score=27.47 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=40.5
Q ss_pred CCCchHHHHHHhhcCChhhHHHHHHHHHHhhCCCCCCcccccCCCccHhHHHHHHhCCCCeEEEEeCCHHHH
Q 045407 79 DMPSKFLLYQQSVQSPKGDISYLQKFFLIYVGGRQPLHLQEDFCGTALLSTEWLRSDSRRTAVGLDLDLEAL 150 (382)
Q Consensus 79 ~~p~~~~LYd~~vq~p~~Di~yl~~~f~~y~ggr~p~~LLEl~CGTG~LS~elar~g~~~tVvGVDLS~emL 150 (382)
..|.=..-|-.+ ..+-...+.+|+.. .+++ ..|..||||+=.+..+|...+-.-.|.=+|+|-.++
T Consensus 59 r~P~inRGy~~R---~~aI~~~v~~Fl~~-~~~~--~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~ 124 (335)
T KOG2918|consen 59 RAPEINRGYWAR---TMAIRHAVRAFLEQ-TDGK--KQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEV 124 (335)
T ss_pred CCceecchhhHH---HHHHHHHHHHHHHh-cCCc--eEEEEcCCCccchhhhhhccCCCCcceEEEecCcHH
Confidence 334444445555 23334555566554 4443 357899999999999999998223455555555444
No 496
>PRK07102 short chain dehydrogenase; Provisional
Probab=31.96 E-value=1e+02 Score=28.03 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=32.5
Q ss_pred hHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 127 LSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 127 LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++..|+++|. +|+.+|.+++-++-..+... .....++.++++|+.++.
T Consensus 17 ~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~ 64 (243)
T PRK07102 17 CARRYAAAGA--RLYLAARDVERLERLADDLR----ARGAVAVSTHELDILDTA 64 (243)
T ss_pred HHHHHHhcCC--EEEEEeCCHHHHHHHHHHHH----HhcCCeEEEEecCCCChH
Confidence 4456777885 69999999976653333211 112347999999998876
No 497
>PRK09135 pteridine reductase; Provisional
Probab=31.86 E-value=3.8e+02 Score=24.03 Aligned_cols=59 Identities=7% Similarity=-0.098 Sum_probs=32.9
Q ss_pred cccccCCCccH---hHHHHHHhCCCCeEEEEeCC-HHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTAL---LSTEWLRSDSRRTAVGLDLD-LEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG~---LS~elar~g~~~tVvGVDLS-~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
++|=.||+.|. ++..|+++|+ +|++++.+ ..-+....... . ......+.++++|+++..
T Consensus 8 ~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-~---~~~~~~~~~~~~Dl~~~~ 70 (249)
T PRK09135 8 VALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAEL-N---ALRPGSAAALQADLLDPD 70 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHH-H---hhcCCceEEEEcCCCCHH
Confidence 45566654332 3345667774 79999985 33333222211 1 111235788999998876
No 498
>PRK07825 short chain dehydrogenase; Provisional
Probab=31.78 E-value=1.5e+02 Score=27.61 Aligned_cols=54 Identities=9% Similarity=-0.150 Sum_probs=36.0
Q ss_pred cccccCCCcc---HhHHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 116 HLQEDFCGTA---LLSTEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 116 ~LLEl~CGTG---~LS~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
.++=.|++.| .++..|+++|. .|+.++.+++.+.-..+.. .++.+++.|+.++.
T Consensus 7 ~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~---------~~~~~~~~D~~~~~ 63 (273)
T PRK07825 7 VVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAEL---------GLVVGGPLDVTDPA 63 (273)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh---------ccceEEEccCCCHH
Confidence 3444565443 24456777885 6999999998876443332 14778999998876
No 499
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.18 E-value=66 Score=31.16 Aligned_cols=35 Identities=20% Similarity=0.053 Sum_probs=27.1
Q ss_pred cCCC--ccHhHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Q 045407 120 DFCG--TALLSTEWLRSDSRRTAVGLDLDLEALEWCMEN 156 (382)
Q Consensus 120 l~CG--TG~LS~elar~g~~~tVvGVDLS~emL~~A~e~ 156 (382)
+|+| .+.++..|++.|. +|+.+|.+++.|+.+++.
T Consensus 9 iGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 9 AGAGVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKER 45 (287)
T ss_pred ECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHH
Confidence 4666 2456677788885 699999999999988765
No 500
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=30.99 E-value=1.6e+02 Score=26.71 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=30.0
Q ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHhccccccCCCCcceEEEeccCCCch
Q 045407 128 STEWLRSDSRRTAVGLDLDLEALEWCMENNLNKVGADGYSRISLFHGNVLQPL 180 (382)
Q Consensus 128 S~elar~g~~~tVvGVDLS~emL~~A~e~~~~kl~~d~~~RI~l~~gDV~~~~ 180 (382)
+..|+++|+ +|++++.+++-++...... . . ...++.++.+|+.++.
T Consensus 18 ~~~l~~~g~--~v~~~~r~~~~~~~~~~~~-~---~-~~~~~~~~~~D~~~~~ 63 (255)
T TIGR01963 18 ALALAAAGA--NVVVNDLGEAGAEAAAKVA-T---D-AGGSVIYLVADVTKED 63 (255)
T ss_pred HHHHHHCCC--EEEEEeCCHHHHHHHHHHH-H---h-cCCceEEEECCCCCHH
Confidence 334556675 7999999987665443321 1 0 1136889999998876
Done!