BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045409
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 34 KKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRALVISSW 93
KK G K P++ + P VG L L + H K+ KYG + + +G +++
Sbjct: 3 KKTGAKYPKSLLSLPLVGSLPFLPRHGHM-HNNFFKLQKKYGPIYSVRMGTKTTVIVGHH 61
Query: 94 EVAKECFSTNDKLFSTPAKLMGYDHAI-----IGFAPYGSYWREVRKLSTA 139
++AKE K FS ++ D A I FA G++W+ R+L+ A
Sbjct: 62 QLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMA 112
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G K P P +G++ L + + ++L ++ YG F ++ G+ R +
Sbjct: 1 MAKKTSSGRGKLPPGPTPLPVIGNI--LQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMV 58
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ +EV KE + FS + A GF G W+E+R+ S L
Sbjct: 59 VLHGYEVVKEALIDLGEEFSGRGHFPLAERANRGFGIVFSNGKRWKEIRRFSLMTL 114
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+ L + + ++ +L K++++YG F IHLG R +
Sbjct: 1 MAKKTSSKGKLPP-GPTPLPFIGNY--LQLNTEQMYNSLMKISERYGPVFTIHLGPRRVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + KE + FS + +D G+ G +++R+ S A L
Sbjct: 58 VLCGHDAVKEALVDQAEEFSGRGEQATFDWLFKGYGVAFSNGERAKQLRRFSIATL 113
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+ L + + ++ +L K++++YG F IHLG R +
Sbjct: 1 MAKKTSSKGKLPP-GPTPLPFIGNY--LQLNTEQMYNSLMKISERYGPVFTIHLGPRRVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + +E + FS + +D G+ G +++R+ S A L
Sbjct: 58 VLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATL 113
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+ L + + ++ +L K++++YG F IHLG R +
Sbjct: 1 MAKKTSSKGKLPP-GPTPLPFIGNY--LQLNTEQMYNSLMKISERYGPVFTIHLGPRRVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + +E + FS + +D G+ G +++R+ S A L
Sbjct: 58 VLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATL 113
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+ L + + ++ +L K++++YG F IHLG R +
Sbjct: 1 MAKKTSSKGKLPP-GPTPLPFIGNY--LQLNTEQMYNSLMKISERYGPVFTIHLGPRRVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + +E + FS + +D G+ G +++R+ S A L
Sbjct: 58 VLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATL 113
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+ L + + ++ +L K++++YG F IHLG R +
Sbjct: 1 MAKKTSSKGKLPP-GPTPLPFIGNY--LQLNTEQMYNSLMKISERYGPVFTIHLGPRRVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + +E + FS + +D G+ G +++R+ S A L
Sbjct: 58 VLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATL 113
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+ L + + ++ +L K++++YG F IHLG R +
Sbjct: 1 MAKKTSSKGKLPP-GPTPLPFIGNY--LQLNTEQMYNSLMKISERYGPVFTIHLGPRRVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + +E + FS + +D G+ G +++R+ S A L
Sbjct: 58 VLCGHDAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFSNGERAKQLRRFSIATL 113
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+L L + + R+ ++ +KYG F ++LG +
Sbjct: 1 MAKKTSSKGKLPP-GPSPLPVLGNL--LQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + +E + FS K+ D G+ G WR +R+ S A +
Sbjct: 58 VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATM 113
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+L L + + R+ ++ +KYG F ++LG +
Sbjct: 1 MAKKTSSKGKLPP-GPSPLPVLGNL--LQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + +E + FS K+ D G+ G WR +R+ S A +
Sbjct: 58 VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATM 113
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+L L + + R+ ++ +KYG F ++LG +
Sbjct: 1 MAKKTSSKGKLPP-GPSPLPVLGNL--LQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + +E + FS K+ D G+ G WR +R+ S A +
Sbjct: 58 VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATM 113
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+L L + + R+ ++ +KYG F ++LG +
Sbjct: 1 MAKKTSSKGKLPP-GPSPLPVLGNL--LQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + +E + FS K+ D G+ G WR +R+ S A +
Sbjct: 58 VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATM 113
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP P +G+L L + + R+ ++ +KYG F ++LG +
Sbjct: 1 MAKKTSSKGKLPP-GPSPLPVLGNL--LQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ + +E + FS K+ D G+ G WR +R+ S A +
Sbjct: 58 VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATM 113
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 18/159 (11%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G K P WP +GH+ L G N H L +M+ +YG I +G +
Sbjct: 1 MAKKTSSKGLKNPPGPWGWPLIGHM-LTLGKNP--HLALSRMSQQYGDVLQIRIGSTPVV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGY----DHAIIGFAP-YGSYWREVRKLSTAQL-- 141
V+S + ++ F L + + + F+P G W R+L+ L
Sbjct: 58 VLSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAARRRLAQNGLKS 117
Query: 142 -------LSNHRLELLKHVRDTEVKVFIKELHEQCAKNG 173
S+ L +HV E +V I L E A G
Sbjct: 118 FSIASDPASSTSCYLEEHV-SKEAEVLISTLQELMAGPG 155
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 23/165 (13%)
Query: 25 VATSIAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGI 84
V + R KG + PPE G WP +GH+ L G N H L +M+ +YG I +G
Sbjct: 3 VLKGLRPRVPKGLKSPPEPWG-WPLLGHV-LTLGKNP--HLALSRMSQRYGDVLQIRIGS 58
Query: 85 HRALVISSWEVAKEC-------FSTNDKLFSTPAKLMGYDHAIIGFAPYGSYWREVRKLS 137
LV+S + ++ F L++ + L+ ++ G W R+L+
Sbjct: 59 TPVLVLSRLDTIRQALVRQGDDFKGRPDLYT--STLITDGQSLTFSTDSGPVWAARRRLA 116
Query: 138 TAQL---------LSNHRLELLKHVRDTEVKVFIKELHEQCAKNG 173
L S+ L +HV E K I L E A G
Sbjct: 117 QNALNTFSIASDPASSSSCYLEEHV-SKEAKALISRLQELMAGPG 160
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 29 IAKRNKKGGRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRAL 88
+AK+ G+ PP +P +G++ + + I ++L K ++ YG F ++LG+ +
Sbjct: 1 MAKKTSSKGKLPP-GPTPFPIIGNILQIDAKD--ISKSLTKFSECYGPVFTVYLGMKPTV 57
Query: 89 VISSWEVAKECFSTNDKLFSTPAKLMGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
V+ +E KE + F+ + + G W+E+R+ S L
Sbjct: 58 VLHGYEAVKEALVDLGEEFAGRGSVPILEKVSKGLGIAFSNAKTWKEMRRFSLMTL 113
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 52 HLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRALVISSWEVAKECFSTNDKLFS 108
+++ LA S++L H + K + YG F + LG +V++ ++V KEC ++F+
Sbjct: 25 NIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFA 81
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 52 HLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRALVISSWEVAKECFSTNDKLFS 108
+++ LA S++L H + K + YG F + LG +V++ ++V KEC ++F+
Sbjct: 25 NIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFA 81
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 54 HLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRALVISSWEVAKECFSTNDKLFSTPAKL 113
+LL + + ++ + +KYG F +HLG +++ E +E + FS K+
Sbjct: 23 NLLQMDRRGLLKSFLRFREKYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGKI 82
Query: 114 MGYDHAIIGFA---PYGSYWREVRKLSTAQL 141
D G+ G+ W+ +R+ S +
Sbjct: 83 AMVDPFFRGYGVIFANGNRWKVLRRFSVTTM 113
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 69 KMADKYGRAFLIHLGIHRALVISSWEVAKECFSTN--DKLFSTPAKLMGYDHAIIGFAP- 125
++ ++G F + L +V++ +E T+ D P + I+GF P
Sbjct: 38 QLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT----QILGFGPR 93
Query: 126 --------YGSYWREVRKLSTAQL 141
YG WRE R+ S + L
Sbjct: 94 SQGVFLARYGPAWREQRRFSVSTL 117
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 69 KMADKYGRAFLIHLGIHRALVISSWEVAKECFSTN--DKLFSTPAKLMGYDHAIIGFAP- 125
++ ++G F + L +V++ +E T+ D P + I+GF P
Sbjct: 38 QLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT----QILGFGPR 93
Query: 126 --------YGSYWREVRKLSTAQL 141
YG WRE R+ S + L
Sbjct: 94 SQGVFLARYGPAWREQRRFSVSTL 117
>pdb|3L4D|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
pdb|3L4D|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Leishmania Infantum In Complex With Fluconazole
Length = 453
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 37 GRKPPEAAGAWPCVGHLHLLAGSNQLIHRTLGKMADKYGRAFLIHLGIHRALVISSWEVA 96
G+ PP G P VGH+ + G + L + K KYG F +++ +R V+
Sbjct: 2 GKLPPVVHGTTPFVGHI-IQFGKDPL--GFMLKAKKKYGGIFTMNICGNRITVVGDVHQH 58
Query: 97 KECFSTNDKLFSTPAKLMGYDHAIIG-----FAPYGSYWREVRKLSTAQLLSNHRLELLK 151
+ F+ +++ S P ++ + + G APY ++ L A+ L+ + +
Sbjct: 59 SKFFTPRNEILS-PREVYSFMVPVFGEGVAYAAPYPRMREQLNFL--AEELTVAKFQNFA 115
Query: 152 HVRDTEVKVFIK 163
EV+ F+K
Sbjct: 116 PSIQHEVRKFMK 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,844,846
Number of Sequences: 62578
Number of extensions: 252147
Number of successful extensions: 448
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 24
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)