Query 045410
Match_columns 589
No_of_seqs 156 out of 2263
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 23:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 7.1E-31 2.4E-35 283.8 37.6 444 25-564 9-477 (491)
2 2xut_A Proton/peptide symporte 100.0 1.4E-29 4.6E-34 276.2 27.1 484 26-564 9-508 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 2.1E-27 7.1E-32 253.2 29.7 398 27-559 26-434 (451)
4 4gc0_A D-xylose-proton symport 100.0 6E-27 2.1E-31 252.9 24.9 424 62-582 52-486 (491)
5 3o7q_A L-fucose-proton symport 99.9 7.9E-25 2.7E-29 232.4 36.2 359 24-518 21-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 1.2E-22 4E-27 211.4 19.5 165 33-226 4-168 (375)
7 2cfq_A Lactose permease; trans 99.9 3.2E-22 1.1E-26 211.8 13.0 398 28-566 6-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 2.7E-12 9.2E-17 136.0 18.7 179 28-232 251-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 4.1E-12 1.4E-16 134.2 16.8 166 28-224 257-424 (438)
10 2cfq_A Lactose permease; trans 99.3 3.2E-11 1.1E-15 127.1 14.4 172 30-229 221-396 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 4.7E-10 1.6E-14 120.3 11.2 186 29-234 283-473 (491)
12 4gc0_A D-xylose-proton symport 99.0 1.6E-08 5.6E-13 108.2 21.6 183 30-236 277-466 (491)
13 2gfp_A EMRD, multidrug resista 98.8 1.5E-09 5.1E-14 112.1 5.0 162 29-219 199-363 (375)
14 2xut_A Proton/peptide symporte 98.3 7.4E-06 2.5E-10 88.2 14.6 137 377-557 57-197 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=7.1e-31 Score=283.84 Aligned_cols=444 Identities=15% Similarity=0.237 Sum_probs=297.8
Q ss_pred CCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHh-----cCCchhHHHHHHHHHHHHHHhhhhhhhHHhhh-cccchHH
Q 045410 25 KGGWRSIKYILGNETFEKLASMSLIANMTVYLRTK-----YNMDGILLVNVVSIWGGSSSLTAIPGALLSDT-YLGRFRT 98 (589)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~ 98 (589)
++++|..+.+....++..+++|++.++++.|+.+. +|++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 45677888888999999999999999999999988 99999999999999999999999999999999 6 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcch
Q 045410 99 LLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKS 178 (589)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 178 (589)
++.+.++..++.++++++. +.+.++++|+++|++.+...+...+++.|.+|+++ +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~ 142 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF---------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----R 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC---------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----T
T ss_pred HHHHHHHHHHHHHHHHHhh---------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----c
Confidence 9999999999999998866 55679999999999999999999999999998743 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhcccccc---CCCC-ChHHHHHHHHH
Q 045410 179 QLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIK---NPQG-SVFVDMAKVIT 254 (589)
Q Consensus 179 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~ 254 (589)
.|+.++++++.+.++|..++|.+++++.+..|||+.|++.++..+++.+.+++..++...+ +++. ....+..+...
T Consensus 143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
T 4aps_A 143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV 222 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence 4778899999999999999999999999999999999998776666665555444432211 1111 11111111000
Q ss_pred H--------------HHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCc
Q 045410 255 A--------------SCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGW 320 (589)
Q Consensus 255 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (589)
. ...+++. +..+................. ...|
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~------~~~~ 269 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGWN---------------------------SLPAYINLLTIVAIAIPVFYF------AWMI 269 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSC---------------------------CTTHHHHHHHHHHHHHHHHHH------HHHC
T ss_pred HHHHHHHHHHHHHHHHHhccCc---------------------------ccccchhhhhHHHHHHHHHHH------HHHh
Confidence 0 0000000 000000000000000000000 0000
Q ss_pred ccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhh-hhcccccCcccccccccchhhHHHHHHHHHhhhhHHH
Q 045410 321 RLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQA-IQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFV 399 (589)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 399 (589)
+... ....+.++......+++....++..+.+.......+. ...+.+. ...+.....+.+..++..++.+++
T Consensus 270 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l-- 342 (491)
T 4aps_A 270 SSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW----FPVSWFQSLNPLFIMLYTPFFAWL-- 342 (491)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS----SCSGGGTTHHHHHHHHHHHHHHHH--
T ss_pred hccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc----cCHHHHhccchHHHHHHHHHHHHH--
Confidence 0000 0011233334444555556666666665555332222 2222221 345666777777777777776666
Q ss_pred HhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHH
Q 045410 400 PLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEF 479 (589)
Q Consensus 400 ~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~ 479 (589)
.+|+++|+ ......+.+++++.+++++++.+..... ......+.++.++.+++.+++.++..+..+++
T Consensus 343 --~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 410 (491)
T 4aps_A 343 --WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY--------GTSGKVSPLWLVGSWALVILGEMLISPVGLSV 410 (491)
T ss_dssp --HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC--------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred --HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 66666553 2555677789999988888777654210 00113356677778889999999999999999
Q ss_pred HhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 045410 480 LTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA 559 (589)
Q Consensus 480 ~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~ 559 (589)
+.|.+|++.||+++|+.++...+|+.+++.+.+.+.+. ++.+.|.+++++.++..++++++.
T Consensus 411 ~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 472 (491)
T 4aps_A 411 TTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------------------SEVAYFSYFGLGSVVLGIVLVFLS 472 (491)
T ss_dssp HHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS------------------STTHHHHHTHHHHHHHHHHHHHC-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998777542 133567777888777777777665
Q ss_pred ccccc
Q 045410 560 CRFVS 564 (589)
Q Consensus 560 ~~~~~ 564 (589)
++.++
T Consensus 473 ~~~~~ 477 (491)
T 4aps_A 473 KRIQG 477 (491)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.4e-29 Score=276.20 Aligned_cols=484 Identities=20% Similarity=0.275 Sum_probs=284.3
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHHhhhhhhhHHhhhcc-cchHH
Q 045410 26 GGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYN------MDGILLVNVVSIWGGSSSLTAIPGALLSDTYL-GRFRT 98 (589)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~ 98 (589)
+++|..+.+.+..++..+++|++.++++.|+.+++| ++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 445666778889999999999999999999999999 999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcch
Q 045410 99 LLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKS 178 (589)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 178 (589)
++++.++..++.++++++. .+.+.++++|+++|++.+...+...+++.|.+|++++ .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~ 144 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE--------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---S 144 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS--------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---T
T ss_pred HHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---H
Confidence 9999999999998888754 1467789999999999999999999999999987431 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHh
Q 045410 179 QLESFFNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCR 258 (589)
Q Consensus 179 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (589)
.+...+++++.+.++|..++|.+++++.+..||++.|++.+++.++..+..+...++.+..+|++++..+..+......+
T Consensus 145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (524)
T 2xut_A 145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL 224 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHh
Confidence 23456677888999999999999999999899999999887776665555444333333222222221111111111111
Q ss_pred ccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhh--hcCCccccCCCCCCCcc-------cchhhhHH
Q 045410 259 KRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVI--VDSSELDDDGKAKNGWR-------LCSLLQVE 329 (589)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~ 329 (589)
+++...+... ..... .+.........+.+.........+. ...+ .....+|. .+..+...
T Consensus 225 ~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 293 (524)
T 2xut_A 225 TKVEGKGNIG--LVLAL----IGGVSAAYALVNIPTLGIVAGLCCAMVLVMG-----FVGAGASLQLERARKSHPDAAVD 293 (524)
T ss_dssp --CTTHHHHH--HHHHH----HHHHHHHHTGGGTTTTCSSHHHHHHHHHHHH-----HHHTGGGTHHHHSCCSCCSSSST
T ss_pred hhhcccCccc--hhhhh----hhhhhhhhhhcccchhhhhhhhhhhhhhhhc-----ccccchhhHHhhhhccccHhHHH
Confidence 1110000000 00000 0000000000000000000000000 0000 00000110 00000111
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCC
Q 045410 330 QLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKK 409 (589)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~ 409 (589)
+.++.+.....+.....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+..+|.++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 369 (524)
T 2xut_A 294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK- 369 (524)
T ss_dssp TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC-
Confidence 2233333344444445555555555554444433333221 1 23455566666777777788777655545555433
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhh
Q 045410 410 IRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMR 489 (589)
Q Consensus 410 ~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 489 (589)
.+..+.+.+|+++.+++++++.+..... +.....+.+++++.+++.+++++...+..+++..+.+|++.|
T Consensus 370 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 370 --LTALRKMGAGIAITGLSWIVVGTIQLMM--------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp ---CCHHHHHTHHHHHHHHHHTTTTTTTTT--------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 3555677788888888877766532100 000123556677788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 045410 490 TVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVS 564 (589)
Q Consensus 490 g~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~ 564 (589)
|+++|++++...+|+.+++.+.+.+.+.... +|...++.+. ..+.|++++++.+++.++++++.++.++
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVT----EQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQM 508 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH----HHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988653210 1211000010 1233677777777777776666655544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=2.1e-27 Score=253.22 Aligned_cols=398 Identities=11% Similarity=0.003 Sum_probs=250.9
Q ss_pred CchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410 27 GWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS 106 (589)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~ 106 (589)
+|+.++.+....+...+..+.+.+.++. +.+++ .+..+.+++.+++.++..++.+++|+++|| +|||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHH
Confidence 3555555556667776666655555554 45567 999999999999999999999999999999 59999999999999
Q ss_pred HHHHHHHHH----hhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhh
Q 045410 107 FLGMGIMTL----TASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLES 182 (589)
Q Consensus 107 ~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 182 (589)
+++.+++++ +. +.+.++++|+++|++.+...+...+++.|.+|+ ++|++
T Consensus 103 ~~~~~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~r~~ 155 (451)
T 1pw4_A 103 AAVMLFMGFVPWATS---------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGG 155 (451)
T ss_dssp HHHHHHHHHCHHHHS---------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THHHH
T ss_pred HHHHHHHHhhhhccc---------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc------hhhhH
Confidence 999999998 66 556799999999999999999999999999986 45888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhccc
Q 045410 183 FFNWWYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRK 261 (589)
Q Consensus 183 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (589)
.+++.+.+.++|.+++|.+++++.+..| ||+.|++.+++.++..++.++..++.+......+
T Consensus 156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 218 (451)
T 1pw4_A 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP----------------- 218 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC-----------------
Confidence 9999999999999999999999888898 9999998887766555544444332211110000
Q ss_pred cccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccc-hhhhHHHHHHHHhHH-H
Q 045410 262 VNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLC-SLLQVEQLKLLVAMF-P 339 (589)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~ 339 (589)
.++ .+.... ++. ... ......++.. ..+..++ +.++... .
T Consensus 219 ----~~~----~~~~~~-~~~---~~~-------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 260 (451)
T 1pw4_A 219 ----IEE----YKNDYP-DDY---NEK-------------------------AEQELTAKQIFMQYVLPN-KLLWYIAIA 260 (451)
T ss_dssp ----CTT----TCCC------------------------------------------CCTHHHHHHTSSC-HHHHHHHHH
T ss_pred ----hhh----hccccc-ccc---hhh-------------------------hhcccccccchHHHHHcC-HHHHHHHHH
Confidence 000 000000 000 000 0000000000 0000000 1111111 1
Q ss_pred HHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhh--cCCCCCCCchHH
Q 045410 340 VWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKM--TGKKIRLTMRQR 417 (589)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~--~~k~~~~~~~~~ 417 (589)
.++....++.. ..+.+.+..+..+.+. ...+.......++.+++..+.+++ .+|+ ++| +.
T Consensus 261 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~~~~-------~~ 322 (451)
T 1pw4_A 261 NVFVYLLRYGI-LDWSPTYLKEVKHFAL------DKSSWAYFLYEYAGIPGTLLCGWM----SDKVFRGNR-------GA 322 (451)
T ss_dssp HHHHHHHHHHH-HHHHHHHBTTBSCCCH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHTSTTCH-------HH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCc-------hh
Confidence 11111111111 1111111111011111 112333444445555555555554 5664 322 24
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHH
Q 045410 418 ITIGILMAI-LSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVF 496 (589)
Q Consensus 418 i~~g~~l~~-i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 496 (589)
+.++..+.. ++++++.+.. ..+.+..+....+.+++.....+..+.+..+.+|++.||++.|+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 387 (451)
T 1pw4_A 323 TGVFFMTLVTIATIVYWMNP---------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 387 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCC---------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc---------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 444544444 5555443321 124445556667778877777888889999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 045410 497 FLSLSI-SSYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFA 559 (589)
Q Consensus 497 ~~~~~l-g~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~ 559 (589)
++...+ |..+++.+.+.+.+.. ++...|++.+++.+++.++.+...
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFF-----------------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS-----------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999887632 135677777777777776666553
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=6e-27 Score=252.90 Aligned_cols=424 Identities=12% Similarity=0.049 Sum_probs=230.3
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHH
Q 045410 62 MDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLS 141 (589)
Q Consensus 62 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 141 (589)
.++.+.+++.+++.++..++++++|+++||+ |||++++++.+++.++.++++++.......... ......-..+.+
T Consensus 52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~---~~~~~~~a~~~~ 127 (491)
T 4gc0_A 52 AANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD---NTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS---SSCCGGGGGCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch---hHHHHHHhhhHH
Confidence 3456778999999999999999999999995 999999999999999999998643111000000 000000123778
Q ss_pred HHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------cchhH
Q 045410 142 ILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFTVALVVALTAVVYIQTN--------VSWIL 213 (589)
Q Consensus 142 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~g~~~ 213 (589)
.++++|+++|+|.|+..+..+.+++|..|+ +.|++..++++.+..+|..+++.++..+... .+||+
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPA------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 999999999999999999999999999987 5688888888889999999988777666542 34666
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc---ccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCCccccccccccCC
Q 045410 214 GFAIPTGCFFLSIVVFLIGYHT---YIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLP 290 (589)
Q Consensus 214 ~f~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (589)
.+.+.....++.++..+. .|+ +...+.+.++ ..+.......+..... +
T Consensus 202 ~~~~~~~~~~~~~~~~~~-~peSp~~L~~~~~~~~---a~~~l~~~~~~~~~~~-~------------------------ 252 (491)
T 4gc0_A 202 MFASECIPALLFLMLLYT-VPESPRWLMSRGKQEQ---AEGILRKIMGNTLATQ-A------------------------ 252 (491)
T ss_dssp HHHTTHHHHHHHHHHGGG-SCCCHHHHHHTTCHHH---HHHHHHHHHHHHHHHH-H------------------------
T ss_pred Hhhhhhhhhhhhhhhhhc-CCCChHHHHHcCchhH---HHHhHHHhcCCchhHH-H------------------------
Confidence 655544443333322211 111 1111111111 1111100000000000 0
Q ss_pred CCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccccC
Q 045410 291 HTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFG 370 (589)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (589)
...........++ .... ......++.....................+.....+....+.
T Consensus 253 -----~~~~~~~~~~~~~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 311 (491)
T 4gc0_A 253 -----VQEIKHSLDHGRK--------TGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST--- 311 (491)
T ss_dssp -----HHHHHHHHHHHHH--------HTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH---
T ss_pred -----HHHHHHHHHhhhh--------hhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc---
Confidence 0000000000000 0000 000000111111111111100000000000111111111100
Q ss_pred cccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q 045410 371 SFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFE 450 (589)
Q Consensus 371 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~ 450 (589)
........+..+..++...+.. .+.+|++|| +.+..+...+.++++.++.....
T Consensus 312 ---~~~~~~~~~~~~~~~~~~~~~~----~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~------------ 365 (491)
T 4gc0_A 312 ---DIALLQTIIVGVINLTFTVLAI----MTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT------------ 365 (491)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT------------
T ss_pred ---cchhhHHHHHHHHHHHHHHHHH----HHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc------------
Confidence 1111112222233333333333 346676555 35667777777777666654320
Q ss_pred ccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCC
Q 045410 451 SPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGT 530 (589)
Q Consensus 451 ~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~ 530 (589)
.......++..+.+.........|..+.+..|.+|.+.|++++|+.+..+.+++.+++.+.+.+.+......
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-------- 437 (491)
T 4gc0_A 366 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-------- 437 (491)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH--------
T ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 011222222233333333444567788999999999999999999999999999999998887653211000
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHhhhhh
Q 045410 531 DLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSNAIGKKESQSEEKSQNK 582 (589)
Q Consensus 531 ~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (589)
..+..+.|+++++++++..++.+++.||+|+++.||.|+..++++++++
T Consensus 438 ---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 438 ---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-------
T ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccc
Confidence 0012346788899999999999999999999999999877655544433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=7.9e-25 Score=232.43 Aligned_cols=359 Identities=10% Similarity=0.018 Sum_probs=230.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHH
Q 045410 24 PKGGWRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGS 103 (589)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~ 103 (589)
.+++++.+..+....++..+..+ ....+.+++.+++|+++.+.+++.+++.++..++.++.|+++|| +|||++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~ 98 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGL 98 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHH
Confidence 34456666666666666666655 44445555778999999999999999999999999999999999 59999999999
Q ss_pred HHHHHHHHHH---HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhh
Q 045410 104 IASFLGMGIM---TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQL 180 (589)
Q Consensus 104 ~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 180 (589)
++.+++.+++ .++. +.+.++++|++.|++.+...+...+++.|.+|+ ++|
T Consensus 99 ~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r 151 (438)
T 3o7q_A 99 FLYALGAALFWPAAEIM---------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE------SSG 151 (438)
T ss_dssp HHHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS------TTH
T ss_pred HHHHHHHHHHHhccccc---------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc------hhH
Confidence 9999999998 5544 778899999999999999999999999999987 447
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-------------------------hhHhHHHHHHHHHHHHHHHHHhhc
Q 045410 181 ESFFNWWYFSFTVALVVALTAVVYIQ-TNVS-------------------------WILGFAIPTGCFFLSIVVFLIGYH 234 (589)
Q Consensus 181 ~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~i~~~~~~~~~~ 234 (589)
++.+++++.+.++|..++|.+++++. +..+ ||+.|++.+...++..+..+....
T Consensus 152 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 231 (438)
T 3o7q_A 152 HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF 231 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78899999999999999999999988 5444 899987766554444433332111
Q ss_pred cccccCCCCChHHHHHHHHHHHHhccccccCCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCC
Q 045410 235 TYIIKNPQGSVFVDMAKVITASCRKRKVNLGQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDG 314 (589)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (589)
++.+++.++ +++ .. +. .
T Consensus 232 --p~~~~~~~~--------------------~~~-------~~---------------~~---~---------------- 248 (438)
T 3o7q_A 232 --PALQSDNHS--------------------DAK-------QG---------------SF---S---------------- 248 (438)
T ss_dssp --CCCTTTCCC--------------------CSS-------TT---------------SH---H----------------
T ss_pred --Ccccccccc--------------------ccc-------cc---------------ch---h----------------
Confidence 110000000 000 00 00 0
Q ss_pred CCCCCcccchhhhHHHHHHHHhHHHHHHHHHHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhh
Q 045410 315 KAKNGWRLCSLLQVEQLKLLVAMFPVWITGIFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFY 394 (589)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 394 (589)
..++. ..++.+.....+..++............+.+...+..+.+. ...+.......+..+++.++.
T Consensus 249 ---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~ 315 (438)
T 3o7q_A 249 ---ASLSR----LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFTG 315 (438)
T ss_dssp ---HHHHH----HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhHHH----HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000011111111111111111111111120211112221 112333444444555555555
Q ss_pred hhHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhh
Q 045410 395 ERVFVPLSQKMTGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAV 474 (589)
Q Consensus 395 ~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~ 474 (589)
+++ .+|+++| +.+.++.++..++++++.+.. +. +.+....+.+++.+...|
T Consensus 316 g~l----~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~~~g~~~~~~~~ 366 (438)
T 3o7q_A 316 TWL----ISRFAPH-------KVLAAYALIAMALCLISAFAG-----------------GH-VGLIALTLCSAFMSIQYP 366 (438)
T ss_dssp HHH----HHHSCHH-------HHHHHHHHHHHHHHHHHHHCC-----------------HH-HHHHHHHHHHHHHTTHHH
T ss_pred HHH----HHHhcch-------HHHHHHHHHHHHHHHHHHHcC-----------------Cc-HHHHHHHHHHHHHHHHHH
Confidence 554 5665333 466677777777766555431 22 234445677788888889
Q ss_pred hHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045410 475 AVMEFLTTQLPESMRTVSGAVFFLSLSISSYINSALVNIIHGLT 518 (589)
Q Consensus 475 ~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~ 518 (589)
..+.+..+..|++ ++.+.++.. ...+++.+++.+.+.+.|..
T Consensus 367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 999999877 56799999999999888754
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=1.2e-22 Score=211.45 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHH
Q 045410 33 YILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLGMGI 112 (589)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~~~~ 112 (589)
.+....++..+......+.++. +.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||++++.+.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHH
Confidence 3445666666665555555555 567899999999999999999999999999999999 59999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHHHHHH
Q 045410 113 MTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWYFSFT 192 (589)
Q Consensus 113 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (589)
+.+++ +.+.++++|++.|++.+...+...+++.|.+|++ +|++.+++++...+
T Consensus 82 ~~~~~---------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 82 AVTTS---------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGIL 134 (375)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHH
T ss_pred HHHhc---------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHH
Confidence 99877 7888999999999999999999999999999863 36677899999999
Q ss_pred HHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHH
Q 045410 193 VALVVALTAVVYIQTNVSWILGFAIPTGCFFLSI 226 (589)
Q Consensus 193 ~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~ 226 (589)
+|..++|.+++++.+..+||+.|++.++..++..
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999999999999988899999987766554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=3.2e-22 Score=211.76 Aligned_cols=398 Identities=13% Similarity=0.046 Sum_probs=215.2
Q ss_pred chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHH
Q 045410 28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASF 107 (589)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~ 107 (589)
.|..+......++..+++..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++|| +||||+++++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 3455555566667767767777899999998999999999999999999999999999999999 599999999888765
Q ss_pred HHHHHH---HHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410 108 LGMGIM---TLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF 184 (589)
Q Consensus 108 ~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (589)
++...+ .+.... ...++.++++.+++.+...+...+...+..++. .+.++..+
T Consensus 85 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~ 140 (417)
T 2cfq_A 85 VMFAPFFIFIFGPLL--------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEF 140 (417)
T ss_dssp SCHHHHHHHTHHHHH--------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCH
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccch
Confidence 532211 121100 001233344444443333333333333333210 01234445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHhcccccc
Q 045410 185 NWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYHTYIIKNPQGSVFVDMAKVITASCRKRKVNL 264 (589)
Q Consensus 185 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (589)
+..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...| ++++..+ .
T Consensus 141 g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~------------------~ 197 (417)
T 2cfq_A 141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT----DAPSSAT------------------V 197 (417)
T ss_dssp HHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC----CCSCSSC------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc----ccccccc------------------c
Confidence 55556678899999999999887 58999988765543322222111111 1100000 0
Q ss_pred CCCCCCCccCCCCCccccccccccCCCCcchhhhhhhhhhhcCCccccCCCCCCCcccchhhhHHHHHHHHhHHHHHHHH
Q 045410 265 GQASGNSLYDPPLTQSETESKTTKLPHTNRFRCLDKAAVIVDSSELDDDGKAKNGWRLCSLLQVEQLKLLVAMFPVWITG 344 (589)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (589)
.++. +..+ + ... .-+... .+ ++ +............
T Consensus 198 ~~~~-----~~~~------------~-~~~--~~~~~~-------------------~~-----~~-~~~~~~~~~~~~~ 232 (417)
T 2cfq_A 198 ANAV-----GANH------------S-AFS--LKLALE-------------------LF-----RQ-PKLWFLSLYVIGV 232 (417)
T ss_dssp SSSS-----SSCC------------C-CCC--HHHHHH-------------------HT-----TC-HHHHHHHHHHHHH
T ss_pred cccc-----cccc------------c-ccc--HHHHHH-------------------Hh-----cC-CchhhHHHHHHHH
Confidence 0000 0000 0 000 000000 00 00 1111111111111
Q ss_pred HHHHHhhhcchhhHHhhhhhcccccCcccccccccchhhHHHHHHHHHhhhhHHHHhhhhhcCCCCCCCchHHHHHHHHH
Q 045410 345 IFCFLAMDQQNTIGILQAIQTNKRFGSFNVPPGWMGLISMLTLSTWIFFYERVFVPLSQKMTGKKIRLTMRQRITIGILM 424 (589)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~k~~~k~~~~~~~~~i~~g~~l 424 (589)
...+..+.+..+.+... .......+ ....+....++.+..++...+.+++ .||+++| +.+..+..+
T Consensus 233 ~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g~~-------~~l~~~~~~ 298 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTS--FFATGEQG-TRVFGYVTTMGELLNASIMFFAPLI----INRIGGK-------NALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHH--TSSSHHHH-THHHHHHHHHHHHHHHHHHHHHHHH----HHHHCHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHH----HHHhcHH-------HHHHHHHHH
Confidence 11111121111211111 11100000 0001222333334444444554444 6665433 355667766
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHH-HHHHHHHH
Q 045410 425 AILSLLVAGFVERKRRLSALQHGSFESPISILVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAV-FFLSLSIS 503 (589)
Q Consensus 425 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg 503 (589)
.+++++...+. .+.+.++....+.+++.....+..+.+..|.+|++.||++.+. +++.+.+|
T Consensus 299 ~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg 361 (417)
T 2cfq_A 299 MSVRIIGSSFA-----------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp HHHHHHHHTTC-----------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHh-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHH
Confidence 66665544332 1333444444555666656666678899999999999999998 48888999
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 045410 504 SYINSALVNIIHGLTKKYAKAPWLGGTDLNKDTLDYFYFTIAALEVVNLLYFNFFACRFVSSN 566 (589)
Q Consensus 504 ~~l~~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~ 566 (589)
+.+++.+.|.+.+.. ++...|.+.+++.+++.++.+...++.++.+
T Consensus 362 ~~~gp~l~G~l~~~~-----------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 362 MIFMSVLAGNMYESI-----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHTHHHHTHHHHS-----------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHhhhhHHHHHHhc-----------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 999999999876521 2456677788887777776665555444433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.43 E-value=2.7e-12 Score=136.03 Aligned_cols=179 Identities=11% Similarity=0.018 Sum_probs=149.5
Q ss_pred chHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcc--cchHHHHHHHHH
Q 045410 28 WRSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYL--GRFRTLLYGSIA 105 (589)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grr~~l~~~~~~ 105 (589)
.|.++...+..++..+.++++..+++.|+.+.+|++..+.+++.+...++..++.++.|+++|| + |||+.+..+.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 4566777778888888889999999999998899999999999999999999999999999999 8 999999888776
Q ss_pred HH-HHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHH
Q 045410 106 SF-LGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFF 184 (589)
Q Consensus 106 ~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (589)
.. ++.+++.+.. ..+.+.+.+..++.|++.+...+...+++.|.+|+ +.|++.+
T Consensus 330 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~ 384 (451)
T 1pw4_A 330 LVTIATIVYWMNP-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAA 384 (451)
T ss_dssp HHHHHHHHTTSCC-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHHHH
T ss_pred HHHHHHHHHHHhc-------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch------hhhhhHH
Confidence 66 5555444432 01456677777888999888888889999999986 4588899
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHh
Q 045410 185 NWWYFSFTV-ALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIG 232 (589)
Q Consensus 185 ~~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 232 (589)
++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+..
T Consensus 385 ~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999988777766665555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39 E-value=4.1e-12 Score=134.16 Aligned_cols=166 Identities=11% Similarity=0.027 Sum_probs=134.1
Q ss_pred chHHHHHHHHHHHHHHhHhhhHHHHHHH-HHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410 28 WRSIKYILGNETFEKLASMSLIANMTVY-LRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS 106 (589)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~ 106 (589)
.|.++......++.....+++..+++.| +++.+|++..+.+++.+.+.++..++.+++|+++|| +|||+.+..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence 3455666667777777888888999999 888889999999999999999999999999999999 59999999999988
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410 107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW 186 (589)
Q Consensus 107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (589)
.++.++..+.. +.+.+ ...++.|++.+...|...++..|.+|++ ++.+.++
T Consensus 336 ~~~~~~~~~~~---------------------~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 386 (438)
T 3o7q_A 336 MALCLISAFAG---------------------GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF 386 (438)
T ss_dssp HHHHHHHHHCC---------------------HHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHH
T ss_pred HHHHHHHHHcC---------------------CcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhH
Confidence 88887777754 33333 3447888999999999999999988852 3344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-hhHhHHHHHHHHHH
Q 045410 187 WYFSFTVALVVALTAVVYIQTNVS-WILGFAIPTGCFFL 224 (589)
Q Consensus 187 ~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i 224 (589)
.. ...+|..++|.+.|++.+..| ++..|++..++.++
T Consensus 387 ~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 387 IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 43 556999999999999999998 99998876554443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.27 E-value=3.2e-11 Score=127.09 Aligned_cols=172 Identities=6% Similarity=-0.029 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHH
Q 045410 30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNM---DGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIAS 106 (589)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~ 106 (589)
..+......+.....++....+++.|+.+.++. +..+.+.+.++..++..++.++.|+++|| +|||+.+..+.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHH
Confidence 333333333444445555556788888766653 34556777777778888899999999999 59999999888887
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHH
Q 045410 107 FLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNW 186 (589)
Q Consensus 107 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (589)
.++.+.+++.. +.+.+++..++.+++.+...+....+..|.+|+ +.|++..++
T Consensus 300 ~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~ 352 (417)
T 2cfq_A 300 SVRIIGSSFAT---------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLV 352 (417)
T ss_dssp HHHHHHHTTCC---------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHH
T ss_pred HHHHHHHHHhc---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHH
Confidence 77766555433 445566666677777776677778899999986 567787877
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHH
Q 045410 187 -WYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVF 229 (589)
Q Consensus 187 -~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~ 229 (589)
++....+|+.++|.++|++.+..|++..|.+.+++.+++.++.
T Consensus 353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 396 (417)
T 2cfq_A 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396 (417)
T ss_dssp HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4677789999999999999988888888887776666555443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.05 E-value=4.7e-10 Score=120.33 Aligned_cols=186 Identities=11% Similarity=-0.009 Sum_probs=134.3
Q ss_pred hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHH-----HHH
Q 045410 29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLL-----YGS 103 (589)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~-----~~~ 103 (589)
...+.+....++....++.....++.|+.+.++.+..+.+.+.+...+...++.++.|+++|| +|||+... .+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHH
Confidence 334445556666667777788889999998888887888888899999999999999999999 59987655 667
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhH
Q 045410 104 IASFLGMGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESF 183 (589)
Q Consensus 104 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 183 (589)
++..++.+++.+......- ....+.+.++++.++.|++.+...+...+++.|.+|++ .|++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~ 423 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGT------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA------FNSQM 423 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCC------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT------CSSSS
T ss_pred HHHHHHHHHHHHHHHhcCC------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHH
Confidence 7777766666553211000 00114566777788899999999999999999999974 36677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHHHHHHHHHHHHHHhhc
Q 045410 184 FNWWYFSFTVALVVALTAVVYIQTNVSWILGFAIPTGCFFLSIVVFLIGYH 234 (589)
Q Consensus 184 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 234 (589)
.++++...++|..+++.+.+++.+ .++...|.+.+.+.++..++.+...+
T Consensus 424 ~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 424 MSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp THHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999888765 46666777666655555555444443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.02 E-value=1.6e-08 Score=108.18 Aligned_cols=183 Identities=9% Similarity=-0.021 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHHHHHH
Q 045410 30 SIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIASFLG 109 (589)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~~~ 109 (589)
.........++..+..+.......+++.+..+.+............+...++.++++++.|| +|||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHH
Confidence 33444444444444444445555666677888888888888888888999999999999999 59999999999988888
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHH-HHHhhccccccHHHHhhccCCCCCCCcchhhhhHHHHHH
Q 045410 110 MGIMTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLAL-LAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFNWWY 188 (589)
Q Consensus 110 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (589)
.+.++....... ..+..++..++ .........|..+.+.+|.||+ +.|++++++.+
T Consensus 356 ~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt------~~R~~~~g~~~ 412 (491)
T 4gc0_A 356 MFSLGTAFYTQA-----------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN------AIRGKALAIAV 412 (491)
T ss_dssp HHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT------TTHHHHHHHHH
T ss_pred HHHHHHHHhccc-----------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH------hHHHHHHHHHH
Confidence 777665431111 11222222222 2222233457778999999998 45888999988
Q ss_pred HHHHHHHHHHHHHHHHHHhh------cchhHhHHHHHHHHHHHHHHHHHhhccc
Q 045410 189 FSFTVALVVALTAVVYIQTN------VSWILGFAIPTGCFFLSIVVFLIGYHTY 236 (589)
Q Consensus 189 ~~~~~g~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~i~~~~~~~~~~~~ 236 (589)
....+|+++++.+.+.+.+. .++.+.|++.+++.+++.++.++..|+.
T Consensus 413 ~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 88899999988877766432 3455667776666666666655655543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.84 E-value=1.5e-09 Score=112.07 Aligned_cols=162 Identities=10% Similarity=-0.023 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhhhhHHhhhcccchHHHHHHHHH-HH
Q 045410 29 RSIKYILGNETFEKLASMSLIANMTVYLRTKYNMDGILLVNVVSIWGGSSSLTAIPGALLSDTYLGRFRTLLYGSIA-SF 107 (589)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~-~~ 107 (589)
|..+......++.....+++..+++.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4556666777788888888888899999988999999999999999999999999999999995 873 2333333 22
Q ss_pred HHHHH--HHHhhcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhccccccHHHHhhccCCCCCCCcchhhhhHHH
Q 045410 108 LGMGI--MTLTASIPKLRPPDCTGAQCPQPEGWQLSILYAGLALLAIGSGGIRPCNIAFGADQFDTTTPKGKSQLESFFN 185 (589)
Q Consensus 108 ~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (589)
++... ..... ..+.+.+++..++.|++.+...+...++..|.+| +.|++..+
T Consensus 276 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~g~~~g 329 (375)
T 2gfp_A 276 AGLLMWIPDWFG-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-------FLAGTAGA 329 (375)
T ss_dssp TSSSSSHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-------HHHHHHHH
T ss_pred HHHHHHHHhhhc-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-------cccchHHH
Confidence 22221 12211 0145667777888999999999999999999886 24788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHH
Q 045410 186 WWYFSFTVALVVALTAVVYIQTNVSWILGFAIPT 219 (589)
Q Consensus 186 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 219 (589)
+.+...++|..++|.+.+.+.+..++...+.+..
T Consensus 330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999988777877766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.27 E-value=7.4e-06 Score=88.23 Aligned_cols=137 Identities=11% Similarity=0.098 Sum_probs=95.8
Q ss_pred cccchhhHHHHHHHHHhhhhHHHHhhhhh-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchh
Q 045410 377 GWMGLISMLTLSTWIFFYERVFVPLSQKM-TGKKIRLTMRQRITIGILMAILSLLVAGFVERKRRLSALQHGSFESPISI 455 (589)
Q Consensus 377 ~~~~~i~~~~~~~~~~l~~~~~~~~~~k~-~~k~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (589)
+++.....++..++.++.+++ .||+ ++| +.+.++.++.+++.++..+. +.+.
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l----~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~----------------~~~~ 109 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWI----ADRFFGKY-------NTILWLSLIYCVGHAFLAIF----------------EHSV 109 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH----HTTSSCSH-------HHHHHHHHHHHHHHHHHHHT----------------SSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhcch-------HHHHHHHHHHHHHHHHHHHh----------------cccH
Confidence 334444455555555665554 6665 544 36777888888887776653 1145
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHhhccCchhhHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCC
Q 045410 456 LVLVPQFSFSGLTEGFAAVAVMEFLTTQLPESMRTVSGAV---FFLSLSISSYINSALVNIIHGLTKKYAKAPWLGGTDL 532 (589)
Q Consensus 456 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~w~~~~~~ 532 (589)
+.++...++.|++.+...+...+++.|.+|++.|+++.+. .+....+|..+++.+.+.+.+.. +
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g------- 176 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------G------- 176 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------C-------
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c-------
Confidence 5667778889999999999999999999999999877776 88888899999998887776421 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH
Q 045410 533 NKDTLDYFYFTIAALEVVNLLYFNF 557 (589)
Q Consensus 533 ~~~~~~~~f~~~a~~~~~~~~~~~~ 557 (589)
..+.|++.+++.++..++++.
T Consensus 177 ----~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 177 ----AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 345677776666665554443
Done!