Query 045411
Match_columns 389
No_of_seqs 295 out of 1397
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 23:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 7.6E-34 2.6E-38 235.8 9.3 105 13-118 1-105 (105)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 1.1E-33 3.6E-38 243.1 9.0 116 2-118 7-128 (128)
3 3zqc_A MYB3; transcription-DNA 100.0 2.7E-33 9.2E-38 242.0 10.9 110 15-125 1-110 (131)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.2E-33 7.6E-38 234.8 8.0 105 16-121 1-105 (107)
5 3osg_A MYB21; transcription-DN 100.0 1.6E-32 5.3E-37 236.0 9.2 106 10-117 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.8E-31 6.2E-36 236.7 6.7 108 10-118 52-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 5.7E-31 2E-35 233.4 6.3 118 13-131 3-121 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 3.5E-22 1.2E-26 171.4 6.5 89 42-131 1-90 (128)
9 2dim_A Cell division cycle 5-l 99.8 1.6E-21 5.5E-26 151.8 2.6 67 10-77 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 7.1E-18 2.4E-22 159.8 6.1 106 11-117 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 8.9E-18 3E-22 133.2 5.1 59 56-115 10-68 (73)
12 2dim_A Cell division cycle 5-l 99.7 6.4E-17 2.2E-21 125.8 7.1 65 64-128 4-69 (70)
13 2juh_A Telomere binding protei 99.7 2.5E-17 8.5E-22 142.1 4.9 83 10-93 11-103 (121)
14 2din_A Cell division cycle 5-l 99.7 6.6E-17 2.3E-21 124.4 5.2 59 62-121 2-60 (66)
15 2d9a_A B-MYB, MYB-related prot 99.7 3.3E-17 1.1E-21 123.7 3.2 57 11-68 3-59 (60)
16 2cu7_A KIAA1915 protein; nucle 99.6 2.1E-16 7.1E-21 123.8 6.9 58 63-120 3-60 (72)
17 1gvd_A MYB proto-oncogene prot 99.6 4.9E-17 1.7E-21 119.5 2.8 52 14-66 1-52 (52)
18 2d9a_A B-MYB, MYB-related prot 99.6 2.6E-16 8.9E-21 118.8 6.4 56 64-119 3-59 (60)
19 2roh_A RTBP1, telomere binding 99.6 1.3E-16 4.5E-21 137.8 5.3 79 11-90 26-114 (122)
20 1guu_A C-MYB, MYB proto-oncoge 99.6 8.5E-17 2.9E-21 118.1 2.3 52 14-66 1-52 (52)
21 1ity_A TRF1; helix-turn-helix, 99.6 1.1E-16 3.7E-21 124.3 2.9 63 10-73 4-68 (69)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 1E-15 3.6E-20 112.3 5.9 50 67-116 1-51 (52)
23 1gvd_A MYB proto-oncogene prot 99.6 1.8E-15 6.3E-20 111.1 6.2 50 67-116 1-51 (52)
24 1ity_A TRF1; helix-turn-helix, 99.6 2.7E-15 9.2E-20 116.4 7.5 61 62-122 3-66 (69)
25 1w0t_A Telomeric repeat bindin 99.6 3.5E-15 1.2E-19 110.2 6.0 50 68-117 1-53 (53)
26 3sjm_A Telomeric repeat-bindin 99.6 7.5E-16 2.6E-20 118.9 2.0 56 13-68 8-64 (64)
27 1x41_A Transcriptional adaptor 99.5 1.2E-15 3.9E-20 115.7 2.8 55 11-66 3-57 (60)
28 1x41_A Transcriptional adaptor 99.5 5.2E-15 1.8E-19 112.1 5.9 54 64-117 3-57 (60)
29 3sjm_A Telomeric repeat-bindin 99.5 1.6E-14 5.6E-19 111.3 6.3 52 67-118 9-63 (64)
30 2yum_A ZZZ3 protein, zinc fing 99.5 1.3E-14 4.4E-19 114.0 5.5 58 64-121 3-66 (75)
31 1w0t_A Telomeric repeat bindin 99.5 3.7E-15 1.3E-19 110.1 2.0 49 15-64 1-51 (53)
32 2din_A Cell division cycle 5-l 99.5 1.6E-15 5.4E-20 116.6 0.0 59 10-71 3-61 (66)
33 2yum_A ZZZ3 protein, zinc fing 99.5 3.2E-15 1.1E-19 117.5 1.5 62 10-72 2-68 (75)
34 2elk_A SPCC24B10.08C protein; 99.5 1.1E-14 3.7E-19 109.9 2.8 52 12-63 5-56 (58)
35 2elk_A SPCC24B10.08C protein; 99.5 4.2E-14 1.4E-18 106.7 5.9 50 65-114 5-56 (58)
36 1gv2_A C-MYB, MYB proto-oncoge 99.5 4.7E-14 1.6E-18 116.6 6.6 66 66-131 1-67 (105)
37 3osg_A MYB21; transcription-DN 99.5 5.8E-14 2E-18 120.3 6.8 69 64-132 6-74 (126)
38 2ltp_A Nuclear receptor corepr 99.2 5.7E-15 1.9E-19 120.5 0.0 56 62-117 9-64 (89)
39 2cu7_A KIAA1915 protein; nucle 99.4 2.1E-14 7.1E-19 112.4 1.6 58 10-69 3-60 (72)
40 2k9n_A MYB24; R2R3 domain, DNA 99.4 2.5E-13 8.5E-18 113.2 6.0 63 69-131 1-64 (107)
41 3zqc_A MYB3; transcription-DNA 99.4 3.9E-13 1.3E-17 115.8 6.6 64 69-132 2-66 (131)
42 2llk_A Cyclin-D-binding MYB-li 99.4 2E-13 7E-18 108.1 3.2 62 4-69 11-72 (73)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.4 7.2E-13 2.5E-17 105.0 5.8 52 65-116 14-69 (73)
44 2yus_A SWI/SNF-related matrix- 99.4 3.2E-13 1.1E-17 108.3 3.8 57 4-62 6-62 (79)
45 2aje_A Telomere repeat-binding 99.3 4.7E-13 1.6E-17 112.9 4.2 79 10-89 7-95 (105)
46 2ckx_A NGTRF1, telomere bindin 99.3 6.2E-13 2.1E-17 107.7 4.3 69 17-86 1-79 (83)
47 2yus_A SWI/SNF-related matrix- 99.3 1.5E-12 5E-17 104.4 4.3 48 66-113 15-62 (79)
48 1ign_A Protein (RAP1); RAP1,ye 99.2 5E-12 1.7E-16 119.9 6.0 67 65-132 4-76 (246)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.1E-12 7.3E-17 102.3 1.9 57 7-64 9-68 (73)
50 2ltp_A Nuclear receptor corepr 98.9 1E-12 3.6E-17 107.1 0.0 55 9-65 9-63 (89)
51 2ckx_A NGTRF1, telomere bindin 99.2 1.1E-11 3.8E-16 100.4 5.8 48 70-117 1-53 (83)
52 1x58_A Hypothetical protein 49 99.2 1.8E-11 6E-16 94.4 6.4 51 67-117 6-59 (62)
53 2juh_A Telomere binding protei 99.2 1.7E-11 5.7E-16 105.8 6.1 54 63-116 11-69 (121)
54 2aje_A Telomere repeat-binding 99.2 2.9E-11 9.9E-16 102.0 6.8 53 65-117 9-66 (105)
55 2cjj_A Radialis; plant develop 99.1 5E-11 1.7E-15 98.5 5.6 50 68-117 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.1 7.6E-11 2.6E-15 101.8 6.5 53 65-117 27-84 (122)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 1.6E-09 5.3E-14 82.4 5.8 49 68-116 11-59 (61)
58 2cjj_A Radialis; plant develop 98.9 4.2E-10 1.4E-14 92.9 1.0 48 15-63 7-57 (93)
59 3hm5_A DNA methyltransferase 1 98.8 2.3E-09 7.7E-14 88.7 4.7 67 51-121 16-87 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.7 1.4E-08 4.9E-13 80.0 5.8 51 66-117 5-59 (72)
61 2iw5_B Protein corest, REST co 98.7 1.3E-08 4.6E-13 95.9 6.0 49 68-116 132-180 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.6 1E-08 3.5E-13 77.9 2.7 51 10-62 6-56 (61)
63 1wgx_A KIAA1903 protein; MYB D 98.6 7E-08 2.4E-12 76.5 6.0 56 69-124 8-67 (73)
64 1x58_A Hypothetical protein 49 98.6 1.3E-08 4.6E-13 78.3 1.7 49 14-64 6-57 (62)
65 2xag_B REST corepressor 1; ami 98.4 1.2E-07 4.3E-12 97.7 5.0 47 70-116 381-427 (482)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.4 7.1E-08 2.4E-12 76.0 1.6 52 12-65 4-58 (72)
67 1fex_A TRF2-interacting telome 98.3 9E-07 3.1E-11 67.2 5.1 47 69-115 2-58 (59)
68 1fex_A TRF2-interacting telome 98.2 3.1E-07 1.1E-11 69.7 1.2 48 16-64 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.2 4.3E-07 1.5E-11 72.0 1.6 48 16-64 8-58 (73)
70 2iw5_B Protein corest, REST co 98.1 9.1E-07 3.1E-11 83.5 2.9 51 12-64 129-179 (235)
71 2yqk_A Arginine-glutamic acid 98.0 1.3E-05 4.3E-10 61.3 7.0 51 64-114 4-55 (63)
72 1ug2_A 2610100B20RIK gene prod 98.0 4.9E-06 1.7E-10 68.5 4.9 47 71-117 35-84 (95)
73 2lr8_A CAsp8-associated protei 97.1 1.6E-06 5.4E-11 67.9 0.0 44 71-115 16-62 (70)
74 1ofc_X ISWI protein; nuclear p 97.9 1.6E-05 5.3E-10 78.0 6.2 99 17-116 111-275 (304)
75 4eef_G F-HB80.4, designed hema 97.8 4.2E-06 1.4E-10 66.4 1.6 43 69-111 20-66 (74)
76 4eef_G F-HB80.4, designed hema 97.6 1.1E-05 3.9E-10 64.0 1.0 44 16-60 20-66 (74)
77 2crg_A Metastasis associated p 97.6 0.00014 4.8E-09 56.7 6.7 48 69-117 8-56 (70)
78 4iej_A DNA methyltransferase 1 97.5 0.0001 3.4E-09 61.0 5.5 61 57-121 22-87 (93)
79 2yqk_A Arginine-glutamic acid 97.5 5.5E-05 1.9E-09 57.7 2.8 50 10-61 3-53 (63)
80 4a69_C Nuclear receptor corepr 97.4 0.00019 6.6E-09 58.9 5.7 46 69-114 43-88 (94)
81 2xag_B REST corepressor 1; ami 97.3 8.2E-05 2.8E-09 76.9 2.9 49 12-62 376-424 (482)
82 3hm5_A DNA methyltransferase 1 96.9 0.00032 1.1E-08 57.9 1.7 49 14-63 28-80 (93)
83 2ebi_A DNA binding protein GT- 96.9 0.00074 2.5E-08 53.7 3.8 51 68-118 3-67 (86)
84 4b4c_A Chromodomain-helicase-D 96.6 0.0043 1.5E-07 56.3 7.6 45 71-115 136-195 (211)
85 4a69_C Nuclear receptor corepr 96.6 0.00062 2.1E-08 55.9 1.6 44 16-61 43-86 (94)
86 2crg_A Metastasis associated p 96.6 0.0007 2.4E-08 52.7 1.8 45 15-61 7-52 (70)
87 2y9y_A Imitation switch protei 96.4 0.0048 1.6E-07 62.0 7.0 101 17-117 124-292 (374)
88 2ebi_A DNA binding protein GT- 96.3 0.00051 1.8E-08 54.7 -0.4 50 14-63 2-63 (86)
89 2lr8_A CAsp8-associated protei 94.7 0.0018 6.2E-08 50.7 0.0 48 15-64 13-62 (70)
90 1ug2_A 2610100B20RIK gene prod 95.6 0.0046 1.6E-07 51.0 2.1 49 13-62 30-80 (95)
91 4b4c_A Chromodomain-helicase-D 93.1 0.079 2.7E-06 47.9 4.5 41 5-45 123-163 (211)
92 1irz_A ARR10-B; helix-turn-hel 92.9 0.2 6.8E-06 38.6 5.7 48 67-114 5-57 (64)
93 1ofc_X ISWI protein; nuclear p 92.4 0.18 6E-06 49.4 6.1 49 69-117 110-159 (304)
94 4iej_A DNA methyltransferase 1 91.9 0.058 2E-06 44.5 1.8 49 14-63 28-80 (93)
95 2xb0_X Chromo domain-containin 85.0 0.74 2.5E-05 44.3 4.4 28 17-44 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 79.4 1 3.5E-05 34.6 2.4 48 13-60 4-54 (64)
97 2xb0_X Chromo domain-containin 74.3 4.9 0.00017 38.6 6.2 49 69-117 3-56 (270)
98 2o8x_A Probable RNA polymerase 52.4 14 0.00049 26.2 3.8 43 72-116 16-58 (70)
99 2y9y_A Imitation switch protei 51.9 27 0.00094 35.0 6.9 48 69-116 123-172 (374)
100 2li6_A SWI/SNF chromatin-remod 50.3 10 0.00034 31.5 2.9 38 79-116 53-98 (116)
101 2jrz_A Histone demethylase jar 47.8 20 0.00068 29.8 4.4 38 79-116 44-93 (117)
102 2lm1_A Lysine-specific demethy 47.0 23 0.00078 28.6 4.6 38 79-116 48-97 (107)
103 1ku3_A Sigma factor SIGA; heli 46.0 20 0.00069 26.2 3.8 41 75-116 13-57 (73)
104 2eqy_A RBP2 like, jumonji, at 42.9 26 0.00089 29.3 4.4 38 79-116 46-95 (122)
105 2cxy_A BAF250B subunit, HBAF25 42.4 27 0.00091 29.3 4.4 38 79-116 55-104 (125)
106 2k27_A Paired box protein PAX- 42.0 1.4E+02 0.0048 24.7 9.0 94 16-114 23-136 (159)
107 2p7v_B Sigma-70, RNA polymeras 41.9 21 0.00071 25.8 3.2 41 76-117 9-53 (68)
108 1kkx_A Transcription regulator 40.8 16 0.00054 30.9 2.7 38 80-117 53-98 (123)
109 1c20_A DEAD ringer protein; DN 37.2 36 0.0012 28.5 4.5 38 79-116 56-106 (128)
110 3i4p_A Transcriptional regulat 37.1 30 0.001 29.4 4.0 46 75-121 3-49 (162)
111 3hug_A RNA polymerase sigma fa 36.9 32 0.0011 26.4 3.8 41 75-116 40-80 (92)
112 2rq5_A Protein jumonji; develo 33.9 36 0.0012 28.7 3.9 77 14-116 5-96 (121)
113 2jxj_A Histone demethylase jar 33.5 19 0.00066 28.5 2.0 38 79-116 40-89 (96)
114 2kk0_A AT-rich interactive dom 32.7 46 0.0016 28.6 4.4 38 79-116 68-118 (145)
115 3cz6_A DNA-binding protein RAP 32.4 27 0.00091 31.5 2.9 24 12-35 110-141 (168)
116 2rq5_A Protein jumonji; develo 32.2 13 0.00044 31.5 0.8 58 25-85 45-113 (121)
117 2li6_A SWI/SNF chromatin-remod 32.0 11 0.00037 31.3 0.3 39 26-65 53-98 (116)
118 1x3u_A Transcriptional regulat 30.6 63 0.0021 23.4 4.4 42 72-116 17-58 (79)
119 2q1z_A RPOE, ECF SIGE; ECF sig 29.5 43 0.0015 27.8 3.7 29 87-116 150-178 (184)
120 1k78_A Paired box protein PAX5 28.6 1.8E+02 0.0061 23.6 7.4 78 16-98 30-118 (149)
121 1or7_A Sigma-24, RNA polymeras 28.1 63 0.0022 27.0 4.5 29 87-116 155-183 (194)
122 1ig6_A MRF-2, modulator recogn 27.9 31 0.0011 27.9 2.4 38 79-116 37-87 (107)
123 1tty_A Sigma-A, RNA polymerase 26.6 61 0.0021 24.6 3.8 40 76-116 22-65 (87)
124 3c57_A Two component transcrip 26.6 73 0.0025 24.7 4.3 44 71-117 27-70 (95)
125 3e7l_A Transcriptional regulat 26.2 75 0.0026 22.9 4.0 35 74-109 18-52 (63)
126 1ntc_A Protein (nitrogen regul 26.2 90 0.0031 24.2 4.8 36 74-110 50-85 (91)
127 2yqf_A Ankyrin-1; death domain 26.0 75 0.0026 25.7 4.4 35 73-108 14-48 (111)
128 2e1c_A Putative HTH-type trans 25.2 83 0.0028 27.1 4.8 47 74-121 26-73 (171)
129 2dbb_A Putative HTH-type trans 24.7 1E+02 0.0035 25.4 5.1 45 75-120 9-54 (151)
130 3ulq_B Transcriptional regulat 24.6 95 0.0033 24.1 4.6 47 68-117 26-72 (90)
131 1fse_A GERE; helix-turn-helix 24.5 72 0.0025 22.6 3.7 43 71-116 11-53 (74)
132 1je8_A Nitrate/nitrite respons 24.3 76 0.0026 23.9 3.9 43 71-116 21-63 (82)
133 2jpc_A SSRB; DNA binding prote 23.5 1.1E+02 0.0037 21.0 4.3 38 77-116 3-40 (61)
134 1xsv_A Hypothetical UPF0122 pr 22.7 98 0.0033 25.0 4.5 40 76-116 29-68 (113)
135 3i4p_A Transcriptional regulat 22.7 19 0.00063 30.8 0.1 44 22-67 3-46 (162)
136 2cyy_A Putative HTH-type trans 21.6 1.1E+02 0.0038 25.2 4.8 46 75-121 7-53 (151)
137 2rnj_A Response regulator prot 21.5 77 0.0026 24.1 3.5 43 71-116 29-71 (91)
138 3mzy_A RNA polymerase sigma-H 21.3 79 0.0027 25.3 3.7 29 87-116 123-151 (164)
139 1rp3_A RNA polymerase sigma fa 20.6 1E+02 0.0035 26.4 4.5 35 81-116 196-230 (239)
140 2of5_H Leucine-rich repeat and 20.2 79 0.0027 26.0 3.5 31 77-108 13-43 (118)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=7.6e-34 Score=235.84 Aligned_cols=105 Identities=46% Similarity=0.927 Sum_probs=99.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 045411 13 QVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWS 92 (389)
Q Consensus 13 ~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~kWs 92 (389)
.+++|+||+|||++|+++|++||..+|..||..|++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999998899999999988 9999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHhhhhcc
Q 045411 93 KIASQLPGRTDNEIKNVWNTHLKKRL 118 (389)
Q Consensus 93 kIAk~LpGRT~nqcKnRW~~lLkkrl 118 (389)
.||++|||||++||++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998864
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.1e-33 Score=243.10 Aligned_cols=116 Identities=41% Similarity=0.878 Sum_probs=102.3
Q ss_pred CCCCCCCCCC------CCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCCCCCCHH
Q 045411 2 GKGRAPCCDK------SQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQE 75 (389)
Q Consensus 2 GrgR~pc~~k------p~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~E 75 (389)
||....|..+ |.+++|+||+|||++|+++|++||..+|..||..|++ |++.||++||.++|+|.+++++||+|
T Consensus 7 ~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~e 85 (128)
T 1h8a_C 7 NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 85 (128)
T ss_dssp ---------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHH
T ss_pred CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHH
Confidence 3444456655 8999999999999999999999998899999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhcc
Q 045411 76 EEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRL 118 (389)
Q Consensus 76 EDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkkrl 118 (389)
||.+|+++|.+||++|+.||++|||||+++||+||+.++++++
T Consensus 86 Ed~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 86 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999998764
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.7e-33 Score=241.99 Aligned_cols=110 Identities=40% Similarity=0.734 Sum_probs=105.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhh
Q 045411 15 KRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKI 94 (389)
Q Consensus 15 kKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~kWskI 94 (389)
.||+||+|||++|+++|.+||..+|..||..|++ |+++||++||.++|+|.+++|+||+|||.+|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3799999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHhhhhcccCCCCCc
Q 045411 95 ASQLPGRTDNEIKNVWNTHLKKRLSFRDVKK 125 (389)
Q Consensus 95 Ak~LpGRT~nqcKnRW~~lLkkrl~~~~~sk 125 (389)
|++|||||++|||+||+.+|++++....+.+
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 9999999999999999999999988776654
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.98 E-value=2.2e-33 Score=234.85 Aligned_cols=105 Identities=27% Similarity=0.575 Sum_probs=101.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 045411 16 RGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIA 95 (389)
Q Consensus 16 KG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~kWskIA 95 (389)
||+||+|||++|+++|.+||..+|..||..|++ |+++||++||.++|+|.+++|+||+|||.+|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhhhcccCC
Q 045411 96 SQLPGRTDNEIKNVWNTHLKKRLSFR 121 (389)
Q Consensus 96 k~LpGRT~nqcKnRW~~lLkkrl~~~ 121 (389)
++|||||+++||+||+.++++..+..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999999876543
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.6e-32 Score=236.01 Aligned_cols=106 Identities=33% Similarity=0.636 Sum_probs=101.6
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGN 89 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~ 89 (389)
.++..+||+||+|||++|+++|.+||. +|..||..|++ |+++|||+||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 357899999999999999999999996 99999999998 9999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 90 RWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 90 kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
+|+.||+.|||||+++||+||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999875
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.8e-31 Score=236.66 Aligned_cols=108 Identities=44% Similarity=0.893 Sum_probs=103.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGN 89 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~ 89 (389)
..|.+++|+||+|||++|+++|.+||..+|..||..|++ |++.||+.||.++|+|.+++++||++||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 348999999999999999999999998889999999998 9999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCHHHHHHHHHHhhhhcc
Q 045411 90 RWSKIASQLPGRTDNEIKNVWNTHLKKRL 118 (389)
Q Consensus 90 kWskIAk~LpGRT~nqcKnRW~~lLkkrl 118 (389)
+|+.||++|||||+++||+||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998864
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=5.7e-31 Score=233.42 Aligned_cols=118 Identities=25% Similarity=0.628 Sum_probs=73.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 045411 13 QVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGN-RW 91 (389)
Q Consensus 13 ~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~-kW 91 (389)
++++|+||+|||++|+++|.+||..+|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 478999999999999999999998899999999997 9999999999999999999999999999999999999995 79
Q ss_pred hhhhccCCCCCHHHHHHHHHHhhhhcccCCCCCccccccc
Q 045411 92 SKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVKKDQESKE 131 (389)
Q Consensus 92 skIAk~LpGRT~nqcKnRW~~lLkkrl~~~~~sk~e~~k~ 131 (389)
..||+.|||||+.||++||+++|.+.+.+..|+.+++...
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L 121 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRII 121 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHH
Confidence 9999999999999999999999999999999998776543
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.85 E-value=3.5e-22 Score=171.42 Aligned_cols=89 Identities=26% Similarity=0.576 Sum_probs=64.0
Q ss_pred cchhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhcccC
Q 045411 42 LPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGN-RWSKIASQLPGRTDNEIKNVWNTHLKKRLSF 120 (389)
Q Consensus 42 IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~-kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~ 120 (389)
||+.|++ |++.||+.||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|||||+.||++||+++|.+.+.+
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 7888988 9999999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred CCCCccccccc
Q 045411 121 RDVKKDQESKE 131 (389)
Q Consensus 121 ~~~sk~e~~k~ 131 (389)
..|+.+++...
T Consensus 80 ~~WT~eEd~~L 90 (128)
T 1h8a_C 80 TSWTEEEDRII 90 (128)
T ss_dssp SCCCHHHHHHH
T ss_pred ccCCHHHHHHH
Confidence 99998876543
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-21 Score=151.83 Aligned_cols=67 Identities=25% Similarity=0.550 Sum_probs=64.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCCCCCCHHHH
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEE 77 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EED 77 (389)
..|.+++|+||++||++|+++|.+||..+|..||..|++ |+++|||.||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 357899999999999999999999998899999999997 9999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.70 E-value=7.1e-18 Score=159.77 Aligned_cols=106 Identities=15% Similarity=0.280 Sum_probs=92.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----ccccchhhcccccccccccccccccCCCCC-----------------
Q 045411 11 KSQVKRGPWSPGEDLRLITFIQKHGHEN-----WRALPKQAGLLRCGKSCRLRWINYLRPDVK----------------- 68 (389)
Q Consensus 11 kp~lkKG~WT~EEDe~L~~lV~kyG~~n-----W~~IAk~lg~~Rt~kQCR~RW~n~L~P~lk----------------- 68 (389)
.+.++|++||+|||++|+++|++||..+ |..||+.|++ ||+.|||.||.++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3568899999999999999999998543 9999999998 9999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 045411 69 ------------RGNFTQEEEDTIIRLHES-L--------------------------------GN-------------- 89 (389)
Q Consensus 69 ------------rg~WT~EEDe~Llelv~~-~--------------------------------G~-------------- 89 (389)
+..||.+||-.|+..+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999999977 2 11
Q ss_pred -----------chhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 90 -----------RWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 90 -----------kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
.|..||+.+|+||.+++|+||+.+|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999999776
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.70 E-value=8.9e-18 Score=133.22 Aligned_cols=59 Identities=22% Similarity=0.376 Sum_probs=47.9
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhh
Q 045411 56 RLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLK 115 (389)
Q Consensus 56 R~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLk 115 (389)
--||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 9999999999997544
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.4e-17 Score=125.78 Aligned_cols=65 Identities=22% Similarity=0.363 Sum_probs=61.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhcccCCCCCcccc
Q 045411 64 RPDVKRGNFTQEEEDTIIRLHESLG-NRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVKKDQE 128 (389)
Q Consensus 64 ~P~lkrg~WT~EEDe~Llelv~~~G-~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~~~sk~e~ 128 (389)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.|||+||+++|++.+++..|+.+++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 8999999999999999999999999999999999998765
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.67 E-value=2.5e-17 Score=142.10 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=78.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhh----cccccccccccccccccC-----CCCCCC-CCCHHHHHH
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQA----GLLRCGKSCRLRWINYLR-----PDVKRG-NFTQEEEDT 79 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~l----g~~Rt~kQCR~RW~n~L~-----P~lkrg-~WT~EEDe~ 79 (389)
.++..++++||+|||+.|+++|++||.++|..|++.+ ++ ||+.+|++||+++|+ |.+++| +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3478899999999999999999999988999999986 55 999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCchhh
Q 045411 80 IIRLHESLGNRWSK 93 (389)
Q Consensus 80 Llelv~~~G~kWsk 93 (389)
|+.++..+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999987
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.6e-17 Score=124.36 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=56.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhcccCC
Q 045411 62 YLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFR 121 (389)
Q Consensus 62 ~L~P~lkrg~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~ 121 (389)
+|+|.+++++||.|||++|+++|+.||++|.+||+ |+|||++|||+||+.+|++.+++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 79999999999999999999999999999999999 889999999999999999987754
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=3.3e-17 Score=123.69 Aligned_cols=57 Identities=21% Similarity=0.550 Sum_probs=54.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCC
Q 045411 11 KSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVK 68 (389)
Q Consensus 11 kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lk 68 (389)
.|.+++++||+|||++|+++|.+||..+|..||+.|++ |++.||+.||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 47899999999999999999999998899999999998 9999999999999999875
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.64 E-value=2.1e-16 Score=123.79 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=55.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhcccC
Q 045411 63 LRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSF 120 (389)
Q Consensus 63 L~P~lkrg~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~ 120 (389)
++|.+++++||+|||++|+++|.+||++|..||++|||||++|||+||+.+++++++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998765
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=4.9e-17 Score=119.52 Aligned_cols=52 Identities=44% Similarity=0.903 Sum_probs=49.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCC
Q 045411 14 VKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPD 66 (389)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ 66 (389)
++||+||+|||++|+++|.+||..+|..||..|++ |+++|||.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 68999999999999999999998789999999998 99999999999999984
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2.6e-16 Score=118.78 Aligned_cols=56 Identities=27% Similarity=0.478 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhccc
Q 045411 64 RPDVKRGNFTQEEEDTIIRLHESLG-NRWSKIASQLPGRTDNEIKNVWNTHLKKRLS 119 (389)
Q Consensus 64 ~P~lkrg~WT~EEDe~Llelv~~~G-~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~ 119 (389)
+|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.|||+||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 6999999999999999999999999998764
No 19
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.63 E-value=1.3e-16 Score=137.80 Aligned_cols=79 Identities=19% Similarity=0.320 Sum_probs=73.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhh----ccccccccccccccccc-----CCCCCCCCCCHHH-HHHH
Q 045411 11 KSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQA----GLLRCGKSCRLRWINYL-----RPDVKRGNFTQEE-EDTI 80 (389)
Q Consensus 11 kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~l----g~~Rt~kQCR~RW~n~L-----~P~lkrg~WT~EE-De~L 80 (389)
....++++||+|||+.|+++|++||.++|..|++.+ ++ ||+.||++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 356789999999999999999999998999999975 45 99999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCc
Q 045411 81 IRLHESLGNR 90 (389)
Q Consensus 81 lelv~~~G~k 90 (389)
+.++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=8.5e-17 Score=118.08 Aligned_cols=52 Identities=23% Similarity=0.673 Sum_probs=48.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCC
Q 045411 14 VKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPD 66 (389)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ 66 (389)
+++|+||+|||++|+++|.+||..+|..||+.|++ |++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57999999999999999999998799999999998 99999999999999984
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=1.1e-16 Score=124.29 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=58.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhc--ccccccccccccccccCCCCCCCCCC
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAG--LLRCGKSCRLRWINYLRPDVKRGNFT 73 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg--~~Rt~kQCR~RW~n~L~P~lkrg~WT 73 (389)
.++..++++||+|||++|+++|++||..+|..||..|+ + |++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 35778999999999999999999999889999999999 6 999999999999999999988764
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.59 E-value=1e-15 Score=112.26 Aligned_cols=50 Identities=32% Similarity=0.629 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 67 VKRGNFTQEEEDTIIRLHESLGN-RWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 67 lkrg~WT~EEDe~Llelv~~~G~-kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
+++++||+|||++|+++|.+||. +|..||+.|||||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999999975
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.58 E-value=1.8e-15 Score=111.08 Aligned_cols=50 Identities=36% Similarity=0.771 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 67 VKRGNFTQEEEDTIIRLHESLGN-RWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 67 lkrg~WT~EEDe~Llelv~~~G~-kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 699999999999999999999999875
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=2.7e-15 Score=116.41 Aligned_cols=61 Identities=28% Similarity=0.349 Sum_probs=56.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhhhcccCCC
Q 045411 62 YLRPDVKRGNFTQEEEDTIIRLHESLG-NRWSKIASQLP--GRTDNEIKNVWNTHLKKRLSFRD 122 (389)
Q Consensus 62 ~L~P~lkrg~WT~EEDe~Llelv~~~G-~kWskIAk~Lp--GRT~nqcKnRW~~lLkkrl~~~~ 122 (389)
...+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||+++|++.+.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 345678899999999999999999999 79999999999 99999999999999999887654
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=3.5e-15 Score=110.23 Aligned_cols=50 Identities=30% Similarity=0.448 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhhhc
Q 045411 68 KRGNFTQEEEDTIIRLHESLG-NRWSKIASQLP--GRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 68 krg~WT~EEDe~Llelv~~~G-~kWskIAk~Lp--GRT~nqcKnRW~~lLkkr 117 (389)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 578999999999999999999 79999999999 999999999999999854
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=7.5e-16 Score=118.88 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=49.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccchhhc-ccccccccccccccccCCCCC
Q 045411 13 QVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAG-LLRCGKSCRLRWINYLRPDVK 68 (389)
Q Consensus 13 ~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg-~~Rt~kQCR~RW~n~L~P~lk 68 (389)
..+|++||+|||++|+++|++||..+|..||+.++ .+|++.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 46789999999999999999999889999999876 239999999999999998764
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.2e-15 Score=115.74 Aligned_cols=55 Identities=16% Similarity=0.488 Sum_probs=51.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCC
Q 045411 11 KSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPD 66 (389)
Q Consensus 11 kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~ 66 (389)
.+.+.+++||+|||++|+++|++||..+|..||+.|++ |++.||+.||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 36799999999999999999999998899999999998 99999999999999764
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=5.2e-15 Score=112.11 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=50.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 64 RPDVKRGNFTQEEEDTIIRLHESLG-NRWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 64 ~P~lkrg~WT~EEDe~Llelv~~~G-~kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
.+.+.+++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||+++|...
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4678999999999999999999999 89999999999999999999999998654
No 29
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.51 E-value=1.6e-14 Score=111.35 Aligned_cols=52 Identities=27% Similarity=0.481 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhhhcc
Q 045411 67 VKRGNFTQEEEDTIIRLHESLG-NRWSKIASQLP--GRTDNEIKNVWNTHLKKRL 118 (389)
Q Consensus 67 lkrg~WT~EEDe~Llelv~~~G-~kWskIAk~Lp--GRT~nqcKnRW~~lLkkrl 118 (389)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.|||+||++++|..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 5789999999999999999999 69999999865 9999999999999998765
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=114.01 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=53.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhhccCCCCCHHHHHHHHHHhhhhcccCC
Q 045411 64 RPDVKRGNFTQEEEDTIIRLHESLG------NRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFR 121 (389)
Q Consensus 64 ~P~lkrg~WT~EEDe~Llelv~~~G------~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~ 121 (389)
+|.+.+++||+|||++|+++|.+|| ++|.+||++|+|||+.||++||+++|++.++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 789999999999999999999999998876543
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.50 E-value=3.7e-15 Score=110.12 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=46.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccchhhc--ccccccccccccccccC
Q 045411 15 KRGPWSPGEDLRLITFIQKHGHENWRALPKQAG--LLRCGKSCRLRWINYLR 64 (389)
Q Consensus 15 kKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg--~~Rt~kQCR~RW~n~L~ 64 (389)
+||+||+|||++|+++|.+||..+|..||..|+ + |++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 6 999999999999875
No 32
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-15 Score=116.63 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=54.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCCCC
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGN 71 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~ 71 (389)
..|.+++++||+|||++|+++|+.||. +|..||+ +++ |++.||+.||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 568999999999999999999999995 9999999 776 9999999999999999777653
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.2e-15 Score=117.46 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=56.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCccccchhhcccccccccccccccccCCCCCCCCC
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGH-----ENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNF 72 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~-----~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~W 72 (389)
.+|.+++++||+|||++|+++|.+||. .+|..||..|++ ||+.||+.||+++|.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCCC
Confidence 368999999999999999999999996 789999999998 99999999999999988777643
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=1.1e-14 Score=109.91 Aligned_cols=52 Identities=25% Similarity=0.449 Sum_probs=47.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhccccccccccccccccc
Q 045411 12 SQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63 (389)
Q Consensus 12 p~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L 63 (389)
..+.+++||++||++|+++|++||..+|..||+.|+++|+++|||.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3466899999999999999999999999999999993399999999999875
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=4.2e-14 Score=106.67 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=46.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhh
Q 045411 65 PDVKRGNFTQEEEDTIIRLHESLG-NRWSKIASQLP-GRTDNEIKNVWNTHL 114 (389)
Q Consensus 65 P~lkrg~WT~EEDe~Llelv~~~G-~kWskIAk~Lp-GRT~nqcKnRW~~lL 114 (389)
..+.+++||++||++|+++|.+|| ++|..||++|+ |||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 89999999999 999999999999875
No 36
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.47 E-value=4.7e-14 Score=116.64 Aligned_cols=66 Identities=27% Similarity=0.601 Sum_probs=60.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhcccCCCCCccccccc
Q 045411 66 DVKRGNFTQEEEDTIIRLHESLGN-RWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVKKDQESKE 131 (389)
Q Consensus 66 ~lkrg~WT~EEDe~Llelv~~~G~-kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~~~sk~e~~k~ 131 (389)
++++|+||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+.+..|+.+++...
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L 67 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRII 67 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHH
Confidence 368999999999999999999995 799999999999999999999999999999999998876543
No 37
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.46 E-value=5.8e-14 Score=120.32 Aligned_cols=69 Identities=22% Similarity=0.437 Sum_probs=63.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhcccCCCCCcccccccc
Q 045411 64 RPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVKKDQESKES 132 (389)
Q Consensus 64 ~P~lkrg~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~~~sk~e~~k~~ 132 (389)
.+..++|+||+|||++|+++|.+||.+|..||..|||||+.||+.||+++|.+.+.+..|+.+++....
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~ 74 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLV 74 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999988876543
No 38
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.18 E-value=5.7e-15 Score=120.50 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=53.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 62 YLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 62 ~L~P~lkrg~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
.+.|.+++++||.|||++|+++|.+||++|..||.+|||||++|||+||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999999875
No 39
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=2.1e-14 Score=112.39 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=53.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCC
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKR 69 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkr 69 (389)
..|.+++|+||+|||++|+++|.+||. +|..||+.|++ |++.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999995 99999999998 99999999999999876665
No 40
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.39 E-value=2.5e-13 Score=113.23 Aligned_cols=63 Identities=19% Similarity=0.359 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhcccCCCCCccccccc
Q 045411 69 RGNFTQEEEDTIIRLHESLGN-RWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVKKDQESKE 131 (389)
Q Consensus 69 rg~WT~EEDe~Llelv~~~G~-kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~~~sk~e~~k~ 131 (389)
+|+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.+.+.+..|+.+++...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L 64 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLL 64 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHH
Confidence 589999999999999999995 899999999999999999999999999999999998877544
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.38 E-value=3.9e-13 Score=115.78 Aligned_cols=64 Identities=25% Similarity=0.495 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhcccCCCCCcccccccc
Q 045411 69 RGNFTQEEEDTIIRLHESLG-NRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVKKDQESKES 132 (389)
Q Consensus 69 rg~WT~EEDe~Llelv~~~G-~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~~~sk~e~~k~~ 132 (389)
+|+||+|||++|+++|..|| ++|..||..|||||+.||+.||.++|.+.+.+..|+.+++....
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~ 66 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIF 66 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHH
Confidence 68999999999999999999 78999999999999999999999999999999999988876543
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.36 E-value=2e-13 Score=108.14 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCC
Q 045411 4 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKR 69 (389)
Q Consensus 4 gR~pc~~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkr 69 (389)
+|+-....|.+++|+||+|||++|+++|++||. +|..||+.| + |++.||+.||.. |....+.
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence 455566779999999999999999999999994 699999999 6 999999999974 5544444
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.35 E-value=7.2e-13 Score=104.96 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=48.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 65 PDVKRGNFTQEEEDTIIRLHESLG----NRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 65 P~lkrg~WT~EEDe~Llelv~~~G----~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
+.+.+++||.+||.+|++++.+|| ++|.+||++|||||.+||++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 457889999999999999999999 6899999999999999999999998864
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.35 E-value=3.2e-13 Score=108.27 Aligned_cols=57 Identities=18% Similarity=0.420 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccc
Q 045411 4 GRAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINY 62 (389)
Q Consensus 4 gR~pc~~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~ 62 (389)
.+...+.+....+++||++||++|+++|++|| .+|..||++|++ ||+.||+.||.++
T Consensus 6 ~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 6 SGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp SCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred cCccCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 34445567788899999999999999999999 899999999998 9999999999998
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.34 E-value=4.7e-13 Score=112.89 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=68.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhh----ccccccccccccccccc-----CCCCCCCCCCHHHHHH-
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQA----GLLRCGKSCRLRWINYL-----RPDVKRGNFTQEEEDT- 79 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~l----g~~Rt~kQCR~RW~n~L-----~P~lkrg~WT~EEDe~- 79 (389)
.++..++++||+|||+.|+++|++||.++|..|++.+ ++ ||+.+|++||++++ +|.+++|.-++.|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 4578899999999999999999999988999999976 45 99999999999999 6999999888877655
Q ss_pred HHHHHHHhCC
Q 045411 80 IIRLHESLGN 89 (389)
Q Consensus 80 Llelv~~~G~ 89 (389)
+++|+..+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7788777663
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.33 E-value=6.2e-13 Score=107.74 Aligned_cols=69 Identities=23% Similarity=0.428 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccchh----hccccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 045411 17 GPWSPGEDLRLITFIQKHGHENWRALPKQ----AGLLRCGKSCRLRWINYL-----RPDVKRG-NFTQEEEDTIIRLHES 86 (389)
Q Consensus 17 G~WT~EEDe~L~~lV~kyG~~nW~~IAk~----lg~~Rt~kQCR~RW~n~L-----~P~lkrg-~WT~EEDe~Llelv~~ 86 (389)
++||+|||+.|+++|++||.++|..|++. +++ ||+.+|++||+++| +|.+++| +..++...+++.|+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999998899999996 666 99999999999988 6777666 6777777888888764
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=104.42 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 045411 66 DVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTH 113 (389)
Q Consensus 66 ~lkrg~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~l 113 (389)
...+++||++||.+|+++|.+||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999999866
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.24 E-value=5e-12 Score=119.94 Aligned_cols=67 Identities=27% Similarity=0.462 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHhhhhcccCCCCCcccccccc
Q 045411 65 PDVKRGNFTQEEEDTIIRLHESLGNR------WSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVKKDQESKES 132 (389)
Q Consensus 65 P~lkrg~WT~EEDe~Llelv~~~G~k------WskIAk~LpGRT~nqcKnRW~~lLkkrl~~~~~sk~e~~k~~ 132 (389)
+.+++++||+|||++|+++|++||++ |..||++|||||++|||+||+.+|++++... +...++.+..
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li 76 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLV 76 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhh
Confidence 35788999999999999999999975 9999999999999999999999999998744 6555554443
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.22 E-value=2.1e-12 Score=102.26 Aligned_cols=57 Identities=12% Similarity=0.307 Sum_probs=51.3
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhC---CCCccccchhhcccccccccccccccccC
Q 045411 7 PCCDKSQVKRGPWSPGEDLRLITFIQKHG---HENWRALPKQAGLLRCGKSCRLRWINYLR 64 (389)
Q Consensus 7 pc~~kp~lkKG~WT~EEDe~L~~lV~kyG---~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 64 (389)
+...++.+.+++||++||.+|+++|.+|| ..+|.+||+.||+ ||..||+.||.+++.
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34567889999999999999999999999 3579999999998 999999999998764
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.86 E-value=1e-12 Score=107.06 Aligned_cols=55 Identities=20% Similarity=0.416 Sum_probs=50.6
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCC
Q 045411 9 CDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRP 65 (389)
Q Consensus 9 ~~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P 65 (389)
..-|.+.+|+||+|||++|+++|..||. +|..||..|++ ||+.||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 3458899999999999999999999995 89999999998 9999999999998763
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.21 E-value=1.1e-11 Score=100.36 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHhhhhc
Q 045411 70 GNFTQEEEDTIIRLHESLGN-RWSKIASQ----LPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 70 g~WT~EEDe~Llelv~~~G~-kWskIAk~----LpGRT~nqcKnRW~~lLkkr 117 (389)
.+||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999995 99999995 89999999999999999754
No 52
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.21 E-value=1.8e-11 Score=94.35 Aligned_cols=51 Identities=22% Similarity=0.431 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchhhhh---ccCCCCCHHHHHHHHHHhhhhc
Q 045411 67 VKRGNFTQEEEDTIIRLHESLGNRWSKIA---SQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 67 lkrg~WT~EEDe~Llelv~~~G~kWskIA---k~LpGRT~nqcKnRW~~lLkkr 117 (389)
-++.+||+|||+.|+++|++||.+|..|+ .++++||..++|+||+++.|+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 5789999999999999998764
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.19 E-value=1.7e-11 Score=105.82 Aligned_cols=54 Identities=26% Similarity=0.494 Sum_probs=49.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHhhhh
Q 045411 63 LRPDVKRGNFTQEEEDTIIRLHESLGN-RWSKIASQ----LPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 63 L~P~lkrg~WT~EEDe~Llelv~~~G~-kWskIAk~----LpGRT~nqcKnRW~~lLkk 116 (389)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 456788999999999999999999995 99999997 4999999999999999984
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.18 E-value=2.9e-11 Score=101.96 Aligned_cols=53 Identities=25% Similarity=0.455 Sum_probs=48.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccC----CCCCHHHHHHHHHHhhhhc
Q 045411 65 PDVKRGNFTQEEEDTIIRLHESLGN-RWSKIASQL----PGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 65 P~lkrg~WT~EEDe~Llelv~~~G~-kWskIAk~L----pGRT~nqcKnRW~~lLkkr 117 (389)
+..++++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4568899999999999999999995 999999965 8999999999999999865
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.12 E-value=5e-11 Score=98.46 Aligned_cols=50 Identities=20% Similarity=0.425 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 68 KRGNFTQEEEDTIIRLHESLG----NRWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 68 krg~WT~EEDe~Llelv~~~G----~kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
.+++||.|||++|++++.+|| ++|.+||++|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999988663
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.11 E-value=7.6e-11 Score=101.82 Aligned_cols=53 Identities=26% Similarity=0.477 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHhhhhc
Q 045411 65 PDVKRGNFTQEEEDTIIRLHESLGN-RWSKIASQ----LPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 65 P~lkrg~WT~EEDe~Llelv~~~G~-kWskIAk~----LpGRT~nqcKnRW~~lLkkr 117 (389)
...++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457889999999999999999995 99999996 48999999999999999643
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.6e-09 Score=82.42 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 68 KRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 68 krg~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
..++||++|+.++++++.+||.+|..||.+||+||..||+.+|....+.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcCC
Confidence 4569999999999999999999999999999999999999999876543
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.85 E-value=4.2e-10 Score=92.90 Aligned_cols=48 Identities=13% Similarity=0.282 Sum_probs=43.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCccccchhhccccccccccccccccc
Q 045411 15 KRGPWSPGEDLRLITFIQKHG---HENWRALPKQAGLLRCGKSCRLRWINYL 63 (389)
Q Consensus 15 kKG~WT~EEDe~L~~lV~kyG---~~nW~~IAk~lg~~Rt~kQCR~RW~n~L 63 (389)
.+++||++||.+|++++.+|| ...|.+||+.||+ ||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 368999999999999999997 4579999999998 99999999998864
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.83 E-value=2.3e-09 Score=88.70 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=60.0
Q ss_pred cccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccC-----CCCCHHHHHHHHHHhhhhcccCC
Q 045411 51 CGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQL-----PGRTDNEIKNVWNTHLKKRLSFR 121 (389)
Q Consensus 51 t~kQCR~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~kWskIAk~L-----pGRT~nqcKnRW~~lLkkrl~~~ 121 (389)
-..=|.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++-+..+
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345678999999976 89999999999999999999999999998 58999999999999998876654
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.72 E-value=1.4e-08 Score=80.03 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 66 DVKRGNFTQEEEDTIIRLHESLG----NRWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 66 ~lkrg~WT~EEDe~Llelv~~~G----~kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
..+.+.||.||+++|.+++.+|+ ++|.+||.+| |||..+|++||+.+.+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999997 6799999998 999999999999998764
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.70 E-value=1.3e-08 Score=95.91 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 68 KRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 68 krg~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
..++||++|+.++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4669999999999999999999999999999999999999999987765
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1e-08 Score=77.88 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=45.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccc
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINY 62 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~ 62 (389)
++.....++||++|++++.+++.+|| .+|..||..|++ |+..||+.+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 44445678999999999999999999 699999999998 9999999998754
No 63
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.58 E-value=7e-08 Score=76.52 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhhhcccCCCCC
Q 045411 69 RGNFTQEEEDTIIRLHESLG----NRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFRDVK 124 (389)
Q Consensus 69 rg~WT~EEDe~Llelv~~~G----~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~~~s 124 (389)
...||.+|+++|.+++..|+ .+|.+||..+||||..+|+.||..+++.+-+.+..+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~~~~~ 67 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQKHVT 67 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCCCSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccccccc
Confidence 45899999999999999998 469999999999999999999999977654444433
No 64
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.57 E-value=1.3e-08 Score=78.35 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=43.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccch---hhcccccccccccccccccC
Q 045411 14 VKRGPWSPGEDLRLITFIQKHGHENWRALPK---QAGLLRCGKSCRLRWINYLR 64 (389)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk---~lg~~Rt~kQCR~RW~n~L~ 64 (389)
..|++||+|||+.|++.|++||. +|..|+. .+.+ |+.....+||+++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 46899999999999999999996 9999994 5555 999999999998754
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.43 E-value=1.2e-07 Score=97.70 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 70 GNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 70 g~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
..||.+|-.++++++.+||.+|..||+.+++||..|||++|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999765443
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.39 E-value=7.1e-08 Score=76.03 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=44.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhC---CCCccccchhhcccccccccccccccccCC
Q 045411 12 SQVKRGPWSPGEDLRLITFIQKHG---HENWRALPKQAGLLRCGKSCRLRWINYLRP 65 (389)
Q Consensus 12 p~lkKG~WT~EEDe~L~~lV~kyG---~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P 65 (389)
....++.||.|||++|.+++.+|+ ...|.+||..+ + |+..+|+.||..+...
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHHh
Confidence 456678999999999999999998 35699999998 4 9999999999876543
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.27 E-value=9e-07 Score=67.15 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hhhhhc-cCCCCCHHHHHHHHHHhhh
Q 045411 69 RGNFTQEEEDTIIRLHESL--------GNR-WSKIAS-QLPGRTDNEIKNVWNTHLK 115 (389)
Q Consensus 69 rg~WT~EEDe~Llelv~~~--------G~k-WskIAk-~LpGRT~nqcKnRW~~lLk 115 (389)
|.+||.|||.+|++.|..| |++ |..+++ .+|++|-.+||+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 543 999999 7999999999999998875
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.19 E-value=3.1e-07 Score=69.70 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=42.9
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCccccch-hhcccccccccccccccccC
Q 045411 16 RGPWSPGEDLRLITFIQKH--------GHENWRALPK-QAGLLRCGKSCRLRWINYLR 64 (389)
Q Consensus 16 KG~WT~EEDe~L~~lV~ky--------G~~nW~~IAk-~lg~~Rt~kQCR~RW~n~L~ 64 (389)
|.+||+|||++|++.|.+| |..-|..+++ .++. +|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 6799999999999999999 5445999999 7877 999999999999874
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.17 E-value=4.3e-07 Score=72.02 Aligned_cols=48 Identities=17% Similarity=0.363 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccchhhcccccccccccccccccC
Q 045411 16 RGPWSPGEDLRLITFIQKHGH---ENWRALPKQAGLLRCGKSCRLRWINYLR 64 (389)
Q Consensus 16 KG~WT~EEDe~L~~lV~kyG~---~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 64 (389)
...||.+|+.+|.+++..|+. ..|..||..||+ |+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 358999999999999999975 469999999998 999999999987754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.12 E-value=9.1e-07 Score=83.51 Aligned_cols=51 Identities=24% Similarity=0.398 Sum_probs=46.1
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccC
Q 045411 12 SQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLR 64 (389)
Q Consensus 12 p~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 64 (389)
.....++||.+|+.++++++.+|| ++|..||+.|++ ||..||+.+|+++..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345678999999999999999999 799999999998 999999999988753
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1.3e-05 Score=61.31 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=45.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHHhh
Q 045411 64 RPDVKRGNFTQEEEDTIIRLHESLGNRWSKIAS-QLPGRTDNEIKNVWNTHL 114 (389)
Q Consensus 64 ~P~lkrg~WT~EEDe~Llelv~~~G~kWskIAk-~LpGRT~nqcKnRW~~lL 114 (389)
.|.+....||++|-.+..+++.+||.+|..|++ .|++||..+|...|....
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 366788899999999999999999999999999 599999999999887543
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.01 E-value=4.9e-06 Score=68.53 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 71 NFTQEEEDTIIRLHESLGN---RWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 71 ~WT~EEDe~Llelv~~~G~---kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
-||.|||..||..+++-|. .|+.||+.|.+|+.+||++||+.+++--
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6999999999999999996 7999999999999999999999998743
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.12 E-value=1.6e-06 Score=67.91 Aligned_cols=44 Identities=16% Similarity=0.374 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHhhh
Q 045411 71 NFTQEEEDTIIRLHESLGN---RWSKIASQLPGRTDNEIKNVWNTHLK 115 (389)
Q Consensus 71 ~WT~EEDe~Llelv~~~G~---kWskIAk~LpGRT~nqcKnRW~~lLk 115 (389)
-||.|||..||..+++-|. .|+.||+.| +||++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 799999999 9999999999998875
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.86 E-value=1.6e-05 Score=78.02 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccc-------ccccc----------------------------
Q 045411 17 GPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCR-------LRWIN---------------------------- 61 (389)
Q Consensus 17 G~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR-------~RW~n---------------------------- 61 (389)
+.||..+...++.++.+||..+|..||..|++ ++...++ .||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999986 7766653 12200
Q ss_pred ---------------ccCCCCCCCCCCHHHHHHHHHHHHHhC----Cchhhhhc------------cCCCCCHHHHHHHH
Q 045411 62 ---------------YLRPDVKRGNFTQEEEDTIIRLHESLG----NRWSKIAS------------QLPGRTDNEIKNVW 110 (389)
Q Consensus 62 ---------------~L~P~lkrg~WT~EEDe~Llelv~~~G----~kWskIAk------------~LpGRT~nqcKnRW 110 (389)
+..+..+...||.+||..||-++.+|| +.|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 001222445899999999999999999 46999962 34679999999999
Q ss_pred HHhhhh
Q 045411 111 NTHLKK 116 (389)
Q Consensus 111 ~~lLkk 116 (389)
+.+++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.84 E-value=4.2e-06 Score=66.43 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHH
Q 045411 69 RGNFTQEEEDTIIRLHESLGN----RWSKIASQLPGRTDNEIKNVWN 111 (389)
Q Consensus 69 rg~WT~EEDe~Llelv~~~G~----kWskIAk~LpGRT~nqcKnRW~ 111 (389)
.+.||.+|+++|..++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999884
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.62 E-value=1.1e-05 Score=63.96 Aligned_cols=44 Identities=11% Similarity=0.334 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---Cccccchhhcccccccccccccc
Q 045411 16 RGPWSPGEDLRLITFIQKHGHE---NWRALPKQAGLLRCGKSCRLRWI 60 (389)
Q Consensus 16 KG~WT~EEDe~L~~lV~kyG~~---nW~~IAk~lg~~Rt~kQCR~RW~ 60 (389)
.+.||.+|+.+|.+++.+|+.. .|.+||..||+ |+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4589999999999999999753 69999999998 99999999985
No 77
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.59 E-value=0.00014 Score=56.66 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHHhhhhc
Q 045411 69 RGNFTQEEEDTIIRLHESLGNRWSKIAS-QLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 69 rg~WT~EEDe~Llelv~~~G~kWskIAk-~LpGRT~nqcKnRW~~lLkkr 117 (389)
...||++|-.+..+++.+||.+|..|++ .||+||..+|...|.. -++.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~-wKkt 56 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM-WKTT 56 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH-HHTC
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh-hcCC
Confidence 4589999999999999999999999999 5999999999999873 4443
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.54 E-value=0.0001 Score=60.96 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=51.7
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCC-----CCCHHHHHHHHHHhhhhcccCC
Q 045411 57 LRWINYLRPDVKRGNFTQEEEDTIIRLHESLGNRWSKIASQLP-----GRTDNEIKNVWNTHLKKRLSFR 121 (389)
Q Consensus 57 ~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~kWskIAk~Lp-----GRT~nqcKnRW~~lLkkrl~~~ 121 (389)
+.|..+|. ...||.||...|++|++.|+-+|..|+..+. .||-.++|.||..+.++-+..+
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34566664 3689999999999999999999999998763 7999999999999998866544
No 79
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=5.5e-05 Score=57.73 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=44.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccch-hhccccccccccccccc
Q 045411 10 DKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPK-QAGLLRCGKSCRLRWIN 61 (389)
Q Consensus 10 ~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk-~lg~~Rt~kQCR~RW~n 61 (389)
-.|.+....||++|-.+..+++.+|| .+|..|++ .+++ |+..||..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 35778889999999999999999999 68999999 5888 999999887754
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.41 E-value=0.00019 Score=58.90 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhh
Q 045411 69 RGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHL 114 (389)
Q Consensus 69 rg~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lL 114 (389)
...||++|-.+..+++..||.+|..||..||+||..+|-..|....
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 3589999999999999999999999999999999999999886543
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.31 E-value=8.2e-05 Score=76.89 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=44.4
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccc
Q 045411 12 SQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINY 62 (389)
Q Consensus 12 p~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~ 62 (389)
......+||.+|-.++++++.+|| ++|..||..|++ |+..||+..|.++
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~ 424 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 344578999999999999999999 699999999999 9999999998765
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.86 E-value=0.00032 Score=57.93 Aligned_cols=49 Identities=10% Similarity=0.226 Sum_probs=42.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccchhhc----cccccccccccccccc
Q 045411 14 VKRGPWSPGEDLRLITFIQKHGHENWRALPKQAG----LLRCGKSCRLRWINYL 63 (389)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg----~~Rt~kQCR~RW~n~L 63 (389)
+...+||.||++.|++++++|+ ..|..|+..+. .+|+..+.+.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 4458999999999999999999 68999999983 2399999999998653
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.86 E-value=0.00074 Score=53.74 Aligned_cols=51 Identities=20% Similarity=0.485 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----------CchhhhhccCC----CCCHHHHHHHHHHhhhhcc
Q 045411 68 KRGNFTQEEEDTIIRLHESLG----------NRWSKIASQLP----GRTDNEIKNVWNTHLKKRL 118 (389)
Q Consensus 68 krg~WT~EEDe~Llelv~~~G----------~kWskIAk~Lp----GRT~nqcKnRW~~lLkkrl 118 (389)
....||.+|-..||+++..+. ..|..||..|. .||+.||+++|.++.+.-.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 346899999999999997632 14999999873 6999999999999998743
No 84
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.63 E-value=0.0043 Score=56.30 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHhC-Cchhhhhcc--C--C--------C--CCHHHHHHHHHHhhh
Q 045411 71 NFTQEEEDTIIRLHESLG-NRWSKIASQ--L--P--------G--RTDNEIKNVWNTHLK 115 (389)
Q Consensus 71 ~WT~EEDe~Llelv~~~G-~kWskIAk~--L--p--------G--RT~nqcKnRW~~lLk 115 (389)
.||.+||..||..+.+|| ++|.+|..- | . . ++...+..|...+|+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 599999999999999999 999999652 2 1 2 456678999776665
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.60 E-value=0.00062 Score=55.88 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=40.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccchhhccccccccccccccc
Q 045411 16 RGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWIN 61 (389)
Q Consensus 16 KG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n 61 (389)
...||++|.++..+++..|| .+|..|+..+++ |+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHhc
Confidence 46899999999999999999 689999999998 999999987753
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.59 E-value=0.0007 Score=52.67 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=39.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccch-hhccccccccccccccc
Q 045411 15 KRGPWSPGEDLRLITFIQKHGHENWRALPK-QAGLLRCGKSCRLRWIN 61 (389)
Q Consensus 15 kKG~WT~EEDe~L~~lV~kyG~~nW~~IAk-~lg~~Rt~kQCR~RW~n 61 (389)
....||++|-.+..+++.+|| .+|..|++ .|++ |+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 446899999999999999999 68999999 5888 999999887753
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.42 E-value=0.0048 Score=62.02 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccc-------cccccc---------------------------
Q 045411 17 GPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCR-------LRWINY--------------------------- 62 (389)
Q Consensus 17 G~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR-------~RW~n~--------------------------- 62 (389)
+.||.-+=..++.++.+||..+-..||..|+++++...++ .||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999888999999997226655544 111100
Q ss_pred -------------c----CCC-CCCCCCCHHHHHHHHHHHHHhC----Cchhhhhcc------------CCCCCHHHHHH
Q 045411 63 -------------L----RPD-VKRGNFTQEEEDTIIRLHESLG----NRWSKIASQ------------LPGRTDNEIKN 108 (389)
Q Consensus 63 -------------L----~P~-lkrg~WT~EEDe~Llelv~~~G----~kWskIAk~------------LpGRT~nqcKn 108 (389)
| .+. .+...||.+||..||-++.+|| +.|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 1 011 1345799999999999999999 569999443 34699999999
Q ss_pred HHHHhhhhc
Q 045411 109 VWNTHLKKR 117 (389)
Q Consensus 109 RW~~lLkkr 117 (389)
|...+++--
T Consensus 284 Rc~tLi~~I 292 (374)
T 2y9y_A 284 RGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999753
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.32 E-value=0.00051 Score=54.67 Aligned_cols=50 Identities=22% Similarity=0.458 Sum_probs=40.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCC---------CCccccchhhc---cccccccccccccccc
Q 045411 14 VKRGPWSPGEDLRLITFIQKHGH---------ENWRALPKQAG---LLRCGKSCRLRWINYL 63 (389)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~kyG~---------~nW~~IAk~lg---~~Rt~kQCR~RW~n~L 63 (389)
.+...||.+|-..|+++...... ..|..||..|. -+|++.||+.+|.++.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999975321 14999999864 3599999999998764
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.67 E-value=0.0018 Score=50.71 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=41.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCccccchhhcccccccccccccccccC
Q 045411 15 KRGPWSPGEDLRLITFIQKHGH--ENWRALPKQAGLLRCGKSCRLRWINYLR 64 (389)
Q Consensus 15 kKG~WT~EEDe~L~~lV~kyG~--~nW~~IAk~lg~~Rt~kQCR~RW~n~L~ 64 (389)
.--.||.|||..|+..+++-|. .-|..||+.+ + |++.|...||+.++.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 3457999999999999999986 3699999999 4 999999999987653
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.60 E-value=0.0046 Score=50.98 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=42.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC--CCccccchhhcccccccccccccccc
Q 045411 13 QVKRGPWSPGEDLRLITFIQKHGH--ENWRALPKQAGLLRCGKSCRLRWINY 62 (389)
Q Consensus 13 ~lkKG~WT~EEDe~L~~lV~kyG~--~nW~~IAk~lg~~Rt~kQCR~RW~n~ 62 (389)
+-+-.-||.+||..|+.+.++.|. ..|..||+.+++ |+..|..+||+.+
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~L 80 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFREL 80 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHHH
Confidence 344567999999999999999985 369999999987 9999999999764
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.09 E-value=0.079 Score=47.89 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=33.4
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccchh
Q 045411 5 RAPCCDKSQVKRGPWSPGEDLRLITFIQKHGHENWRALPKQ 45 (389)
Q Consensus 5 R~pc~~kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~ 45 (389)
+-|++.++.-....||.+||..|+..|.+||-++|..|-.-
T Consensus 123 ~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 123 TIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 34555566556678999999999999999999999998653
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.89 E-value=0.2 Score=38.61 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc---hhhhhccC--CCCCHHHHHHHHHHhh
Q 045411 67 VKRGNFTQEEEDTIIRLHESLGNR---WSKIASQL--PGRTDNEIKNVWNTHL 114 (389)
Q Consensus 67 lkrg~WT~EEDe~Llelv~~~G~k---WskIAk~L--pGRT~nqcKnRW~~lL 114 (389)
-.+-.||+|.-+..+++|.++|.. +..|.+.| +|.|..+|+.+...+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999954 78898875 7999999999876543
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.38 E-value=0.18 Score=49.44 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 69 RGNFTQEEEDTIIRLHESLG-NRWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 69 rg~WT~EEDe~Llelv~~~G-~kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
.+.||..+...++.++.+|| ..|..||..|+|+|...|+.++.....+-
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 45799999999999999999 68999999999999999988777777654
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=91.94 E-value=0.058 Score=44.47 Aligned_cols=49 Identities=10% Similarity=0.228 Sum_probs=40.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccchhhcc----ccccccccccccccc
Q 045411 14 VKRGPWSPGEDLRLITFIQKHGHENWRALPKQAGL----LRCGKSCRLRWINYL 63 (389)
Q Consensus 14 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~----~Rt~kQCR~RW~n~L 63 (389)
++-..||.||...|.+++++|. -.|-.|+..... .|+-.+.+.||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999 679999988742 388888888887653
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.03 E-value=0.74 Score=44.30 Aligned_cols=28 Identities=25% Similarity=0.539 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccch
Q 045411 17 GPWSPGEDLRLITFIQKHGHENWRALPK 44 (389)
Q Consensus 17 G~WT~EEDe~L~~lV~kyG~~nW~~IAk 44 (389)
..|+.+||..|+..|-+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 5699999999999999999999999954
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=79.37 E-value=1 Score=34.60 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=34.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCC--ccccchhhcc-cccccccccccc
Q 045411 13 QVKRGPWSPGEDLRLITFIQKHGHEN--WRALPKQAGL-LRCGKSCRLRWI 60 (389)
Q Consensus 13 ~lkKG~WT~EEDe~L~~lV~kyG~~n--W~~IAk~lg~-~Rt~kQCR~RW~ 60 (389)
...+-.||+|..++.+.+|...|... ++.|.+.|+- +.|..++.-|.+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 45678999999999999999999432 6778777763 146666654443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.29 E-value=4.9 Score=38.57 Aligned_cols=49 Identities=10% Similarity=0.253 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC---Cchhhhhcc--CCCCCHHHHHHHHHHhhhhc
Q 045411 69 RGNFTQEEEDTIIRLHESLG---NRWSKIASQ--LPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 69 rg~WT~EEDe~Llelv~~~G---~kWskIAk~--LpGRT~nqcKnRW~~lLkkr 117 (389)
+++||..|-..|++++.+|| .+|..|+.. |+.++...++.-|..++..-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999 689999764 78999999999888777653
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=52.36 E-value=14 Score=26.24 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 72 FTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 72 WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
++ +.+..++.++-..|-.+.+||..| |-+...|+.+.+..+++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44 455566667667789999999999 88999998887766544
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=51.89 E-value=27 Score=35.01 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhhhh
Q 045411 69 RGNFTQEEEDTIIRLHESLG-NRWSKIASQLP-GRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 69 rg~WT~EEDe~Llelv~~~G-~kWskIAk~Lp-GRT~nqcKnRW~~lLkk 116 (389)
.+.||.-+=..++.++.+|| ..-..||..|. |+|..+|+........+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 35799999999999999999 56999999997 99999999544444443
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=50.27 E-value=10 Score=31.51 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 79 TIIRLHESLGN--------RWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 79 ~Llelv~~~G~--------kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
+|..+|..+|+ .|..||..|.--....+|..|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 37788888874 699999987333378999999988865
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.83 E-value=20 Score=29.76 Aligned_cols=38 Identities=13% Similarity=0.361 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCC----HHHHHHHHHHhhhh
Q 045411 79 TIIRLHESLGN--------RWSKIASQLPGRT----DNEIKNVWNTHLKK 116 (389)
Q Consensus 79 ~Llelv~~~G~--------kWskIAk~LpGRT----~nqcKnRW~~lLkk 116 (389)
+|..+|..+|+ .|..||..|.--. ..++|..|..+|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47788888884 6999999872211 56889999888865
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=46.98 E-value=23 Score=28.62 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC--------chhhhhccCCC-CC---HHHHHHHHHHhhhh
Q 045411 79 TIIRLHESLGN--------RWSKIASQLPG-RT---DNEIKNVWNTHLKK 116 (389)
Q Consensus 79 ~Llelv~~~G~--------kWskIAk~LpG-RT---~nqcKnRW~~lLkk 116 (389)
+|..+|..+|+ .|..||..|.- .+ ..++|..|..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47777777774 69999999832 22 46889999888754
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=45.95 E-value=20 Score=26.25 Aligned_cols=41 Identities=20% Similarity=0.418 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHH----hCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 75 EEEDTIIRLHES----LGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 75 EEDe~Llelv~~----~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
+.+..++.+.-- .|-.|..||..| |-|...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344455555544 577899999999 89999999887766654
No 104
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.89 E-value=26 Score=29.29 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCC--C--HHHHHHHHHHhhhh
Q 045411 79 TIIRLHESLGN--------RWSKIASQLPGR--T--DNEIKNVWNTHLKK 116 (389)
Q Consensus 79 ~Llelv~~~G~--------kWskIAk~LpGR--T--~nqcKnRW~~lLkk 116 (389)
+|..+|..+|+ .|..|+..|.-- + ...+|..|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47777888874 699999988221 2 46889999988866
No 105
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=42.40 E-value=27 Score=29.27 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC--------chhhhhccCCC-C---CHHHHHHHHHHhhhh
Q 045411 79 TIIRLHESLGN--------RWSKIASQLPG-R---TDNEIKNVWNTHLKK 116 (389)
Q Consensus 79 ~Llelv~~~G~--------kWskIAk~LpG-R---T~nqcKnRW~~lLkk 116 (389)
+|..+|..+|+ .|.+||..|.- . ...++|..|..+|-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777777774 69999998822 2 246889999988876
No 106
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=42.02 E-value=1.4e+02 Score=24.68 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=55.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 045411 16 RGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINY------LRPDVK----RGNFTQEEEDTIIRLHE 85 (389)
Q Consensus 16 KG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~------L~P~lk----rg~WT~EEDe~Llelv~ 85 (389)
....|.++-..++.++. .| .....||+.++- +... -.||.+. +.+... ....+.+..+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lgi--s~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLRV--SHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHTC--CSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34788888888888884 56 467899999874 3322 3344432 222211 23478888888888887
Q ss_pred HhC-CchhhhhccC---------CCCCHHHHHHHHHHhh
Q 045411 86 SLG-NRWSKIASQL---------PGRTDNEIKNVWNTHL 114 (389)
Q Consensus 86 ~~G-~kWskIAk~L---------pGRT~nqcKnRW~~lL 114 (389)
... -.-.+|+..| ..-+...|....+.+.
T Consensus 98 ~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~ 136 (159)
T 2k27_A 98 QNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV 136 (159)
T ss_dssp HCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHS
T ss_pred HCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHh
Confidence 653 2233455544 1356666665544433
No 107
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=41.88 E-value=21 Score=25.83 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=30.4
Q ss_pred HHHHHHHHHH----HhCCchhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 76 EEDTIIRLHE----SLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 76 EDe~Llelv~----~~G~kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
.+..++.+.- ..|-.+.+||..| |-|...|+.+....+++-
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444555544 2477899999999 999999999888776553
No 108
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=40.81 E-value=16 Score=30.85 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=29.1
Q ss_pred HHHHHHHhCC--------chhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 80 IIRLHESLGN--------RWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 80 Llelv~~~G~--------kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
|..+|...|+ .|..||..|.--....+|..|..+|-+-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 6667777664 5999999873333899999999988763
No 109
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=37.23 E-value=36 Score=28.48 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC--------chhhhhccC--CCC---CHHHHHHHHHHhhhh
Q 045411 79 TIIRLHESLGN--------RWSKIASQL--PGR---TDNEIKNVWNTHLKK 116 (389)
Q Consensus 79 ~Llelv~~~G~--------kWskIAk~L--pGR---T~nqcKnRW~~lLkk 116 (389)
+|..+|..+|+ .|..||..| +.. ....+|..|..+|-.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 47788888884 699999987 332 257899999988866
No 110
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=37.11 E-value=30 Score=29.42 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhcccCC
Q 045411 75 EEEDTIIRLHESLG-NRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFR 121 (389)
Q Consensus 75 EEDe~Llelv~~~G-~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~ 121 (389)
+-|.+|+++.++.| -.|..||+.+ |-|...|+.|++.+.+..+..+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeee
Confidence 45788898888877 5799999999 9999999999999998876543
No 111
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=36.87 E-value=32 Score=26.35 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 75 EEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 75 EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
+.+..++.++-..|-.-..||..| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344556666666788899999999 89999999887766544
No 112
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=33.91 E-value=36 Score=28.68 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=49.4
Q ss_pred CccCCCCHHHH--HHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC--
Q 045411 14 VKRGPWSPGED--LRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHESLGN-- 89 (389)
Q Consensus 14 lkKG~WT~EED--e~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~lkrg~WT~EEDe~Llelv~~~G~-- 89 (389)
.-+.+|.+.+. +.|.++.+..|. ....|+. +++ |.- . --+|..+|.++|+
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~g-k~l-D----------------------L~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IGG-CEL-D----------------------LACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ETT-EEC-C----------------------HHHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CCC-Eec-c----------------------HHHHHHHHHHcCcHH
Confidence 34567887764 457777777773 4555543 222 211 1 1247788888884
Q ss_pred ------chhhhhccC--CCC---CHHHHHHHHHHhhhh
Q 045411 90 ------RWSKIASQL--PGR---TDNEIKNVWNTHLKK 116 (389)
Q Consensus 90 ------kWskIAk~L--pGR---T~nqcKnRW~~lLkk 116 (389)
.|..||..| |.- ....+|..|..+|-+
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 699999987 332 256889999988865
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=33.51 E-value=19 Score=28.50 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=26.7
Q ss_pred HHHHHHHHhC--------CchhhhhccC--CC--CCHHHHHHHHHHhhhh
Q 045411 79 TIIRLHESLG--------NRWSKIASQL--PG--RTDNEIKNVWNTHLKK 116 (389)
Q Consensus 79 ~Llelv~~~G--------~kWskIAk~L--pG--RT~nqcKnRW~~lLkk 116 (389)
+|..+|...| +.|.+||..| +. -...++|..|..+|-.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3777777776 3699999987 22 1256889888877643
No 114
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=32.72 E-value=46 Score=28.65 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC--------chhhhhccC--CCC---CHHHHHHHHHHhhhh
Q 045411 79 TIIRLHESLGN--------RWSKIASQL--PGR---TDNEIKNVWNTHLKK 116 (389)
Q Consensus 79 ~Llelv~~~G~--------kWskIAk~L--pGR---T~nqcKnRW~~lLkk 116 (389)
+|..+|...|+ .|.+||..| +.. ....+|..|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 47778888874 699999987 332 257899999988866
No 115
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=32.40 E-value=27 Score=31.48 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=19.5
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhC
Q 045411 12 SQVKRGPWSPGEDLRLI--------TFIQKHG 35 (389)
Q Consensus 12 p~lkKG~WT~EEDe~L~--------~lV~kyG 35 (389)
|.-.+|-||+++|+.|. ++++|||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 44567999999999875 5788888
No 116
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=32.16 E-value=13 Score=31.47 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCC-------CCccccchhhcccccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 045411 25 LRLITFIQKHGH-------ENWRALPKQAGLLRCG----KSCRLRWINYLRPDVKRGNFTQEEEDTIIRLHE 85 (389)
Q Consensus 25 e~L~~lV~kyG~-------~nW~~IAk~lg~~Rt~----kQCR~RW~n~L~P~lkrg~WT~EEDe~Llelv~ 85 (389)
-+|..+|.+.|- +.|..||..|+...+. ...+..|.++|.|- ...+++|-..|.+-|.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 467888888863 4699999999764322 34678899998762 3478899888887664
No 117
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.98 E-value=11 Score=31.28 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=30.2
Q ss_pred HHHHHHHHhCC-------CCccccchhhcccccccccccccccccCC
Q 045411 26 RLITFIQKHGH-------ENWRALPKQAGLLRCGKSCRLRWINYLRP 65 (389)
Q Consensus 26 ~L~~lV~kyG~-------~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P 65 (389)
+|..+|.+.|- +.|..||..++. -.+...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 57777877762 369999999987 4477888888888865
No 118
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.55 E-value=63 Score=23.42 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 72 FTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 72 WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
+|+.|-+. +.++ ..|-.-..||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQV-LSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHH-HHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45555444 4455 6678899999999 88999999988776654
No 119
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=29.49 E-value=43 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=24.1
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 87 LGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 87 ~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
.|-....||..| |-+...|+++....+++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467899999999 88999999988766654
No 120
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.59 E-value=1.8e+02 Score=23.60 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=47.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 045411 16 RGPWSPGEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINY------LRPDVK----RGNFTQEEEDTIIRLHE 85 (389)
Q Consensus 16 KG~WT~EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~------L~P~lk----rg~WT~EEDe~Llelv~ 85 (389)
....|.++-..++.++. .| .....||+.++- +.. .-.||.+. +.+... ....+.+....|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lgi--s~~-TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLRV--SHG-CVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHTC--CHH-HHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHH-HHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 45789998888888884 56 467899999874 332 23334332 222222 23478888888888887
Q ss_pred HhC-CchhhhhccC
Q 045411 86 SLG-NRWSKIASQL 98 (389)
Q Consensus 86 ~~G-~kWskIAk~L 98 (389)
..+ -.-.+|+..|
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 653 2223555544
No 121
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.14 E-value=63 Score=26.98 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=23.5
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 87 LGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 87 ~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
.|-....||..| |-+...|+++....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467799999999 88999999887765543
No 122
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=27.95 E-value=31 Score=27.93 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=28.0
Q ss_pred HHHHHHHHhC--------CchhhhhccCC--CC---CHHHHHHHHHHhhhh
Q 045411 79 TIIRLHESLG--------NRWSKIASQLP--GR---TDNEIKNVWNTHLKK 116 (389)
Q Consensus 79 ~Llelv~~~G--------~kWskIAk~Lp--GR---T~nqcKnRW~~lLkk 116 (389)
+|..+|..+| +.|.+||..|. .. ...++|..|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777777777 36999999872 21 246899999988865
No 123
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=26.62 E-value=61 Score=24.58 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH----hCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 76 EEDTIIRLHES----LGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 76 EDe~Llelv~~----~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
.+..++.+.-- .|-.+..||..| |-|...|+.+....+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34455555444 467899999999 89999999987766654
No 124
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=26.56 E-value=73 Score=24.68 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 71 NFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 71 ~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46666655554 45 7788899999999 889999999887776553
No 125
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=26.20 E-value=75 Score=22.88 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHH
Q 045411 74 QEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNV 109 (389)
Q Consensus 74 ~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnR 109 (389)
.-|...|.++...+|++.++.|+.| |=+...+..+
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rk 52 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888999999999999999988 5555555443
No 126
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=26.15 E-value=90 Score=24.16 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHH
Q 045411 74 QEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVW 110 (389)
Q Consensus 74 ~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW 110 (389)
.-|...|.+++..+|++.++.|+.| |=+...+..|-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477888999999999999999998 66666665543
No 127
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=26.02 E-value=75 Score=25.70 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 045411 73 TQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKN 108 (389)
Q Consensus 73 T~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKn 108 (389)
+..-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677888889999999999999999 777776654
No 128
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.22 E-value=83 Score=27.12 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhcccCC
Q 045411 74 QEEEDTIIRLHESLG-NRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFR 121 (389)
Q Consensus 74 ~EEDe~Llelv~~~G-~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~ 121 (389)
.+-|.+|+.+....| -.+..||+.+ |-+...|+.|.+.+.+..+..+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEe
Confidence 355778888888877 5799999999 8899999999999988876543
No 129
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=24.70 E-value=1e+02 Score=25.35 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhcccC
Q 045411 75 EEEDTIIRLHESLG-NRWSKIASQLPGRTDNEIKNVWNTHLKKRLSF 120 (389)
Q Consensus 75 EEDe~Llelv~~~G-~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~ 120 (389)
+-|..|+.+....| -.+..||+.+ |-+...|+.|.+.+.+..+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44667888877777 5799999999 889999999999998776553
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.64 E-value=95 Score=24.05 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhc
Q 045411 68 KRGNFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKKR 117 (389)
Q Consensus 68 krg~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkkr 117 (389)
.....|+.|-+.|.-++ .|-.-.+||..| |-+...|+++...++++-
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34467887777665544 788899999999 899999999988877653
No 131
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.49 E-value=72 Score=22.63 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 71 NFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 71 ~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
.+|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++
T Consensus 11 ~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 11 LLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 567766655544 4 6678899999999 88999999888776654
No 132
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.33 E-value=76 Score=23.87 Aligned_cols=43 Identities=30% Similarity=0.295 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 71 NFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 71 ~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46776665554 44 6788899999999 89999999988776654
No 133
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=23.51 E-value=1.1e+02 Score=21.04 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 77 EDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 77 De~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
+..++.+ -..|-.-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3455666 36687889999999 88999999988877655
No 134
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.71 E-value=98 Score=24.98 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 76 EEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 76 EDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
.+..++.++-..|-....||..| |-+...|+.+.+..+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34556666667788899999999 88999998887655543
No 135
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.69 E-value=19 Score=30.76 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCCccccchhhcccccccccccccccccCCCC
Q 045411 22 GEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDV 67 (389)
Q Consensus 22 EEDe~L~~lV~kyG~~nW~~IAk~lg~~Rt~kQCR~RW~n~L~P~l 67 (389)
+-|.+|+.++++.|.-.|..||+.++. +...|+.|+.+.....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~--s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL--STTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 458889999999998899999999986 88888888776654443
No 136
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.64 E-value=1.1e+02 Score=25.20 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhcccCC
Q 045411 75 EEEDTIIRLHESLG-NRWSKIASQLPGRTDNEIKNVWNTHLKKRLSFR 121 (389)
Q Consensus 75 EEDe~Llelv~~~G-~kWskIAk~LpGRT~nqcKnRW~~lLkkrl~~~ 121 (389)
+-|..|+.+....| -.+..||+.+ |-+...|..|.+.+....+..+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEE
Confidence 34667888877777 5799999999 8899999999999988876543
No 137
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.47 E-value=77 Score=24.09 Aligned_cols=43 Identities=26% Similarity=0.218 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 71 NFTQEEEDTIIRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 71 ~WT~EEDe~Llelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45666655554 44 6788899999999 88999999988776654
No 138
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.33 E-value=79 Score=25.26 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=23.2
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 87 LGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 87 ~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
.|-....||..| |-+...|+++....+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467799999999 88999998887765543
No 139
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=20.55 E-value=1e+02 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=25.5
Q ss_pred HHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 045411 81 IRLHESLGNRWSKIASQLPGRTDNEIKNVWNTHLKK 116 (389)
Q Consensus 81 lelv~~~G~kWskIAk~LpGRT~nqcKnRW~~lLkk 116 (389)
+.++-..|-....||..| |-|...|+.+....+++
T Consensus 196 l~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 196 IQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 333333467899999999 89999998887655543
No 140
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=20.25 E-value=79 Score=26.00 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 045411 77 EDTIIRLHESLGNRWSKIASQLPGRTDNEIKN 108 (389)
Q Consensus 77 De~Llelv~~~G~kWskIAk~LpGRT~nqcKn 108 (389)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4568888899999999999999 766666643
Done!