Query 045414
Match_columns 214
No_of_seqs 159 out of 1116
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 23:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_E L12MT, MRP-L12, 39S rib 100.0 1.8E-44 6.2E-49 293.6 14.4 135 78-214 1-137 (137)
2 2j01_L 50S ribosomal protein L 100.0 3.4E-40 1.2E-44 265.1 13.9 121 79-213 4-124 (125)
3 2zjq_5 50S ribosomal protein L 100.0 5.4E-40 1.9E-44 263.0 13.9 118 79-213 4-121 (122)
4 1dd3_A 50S ribosomal protein L 100.0 6.5E-41 2.2E-45 270.1 5.3 123 79-213 2-127 (128)
5 3sgf_J 50S ribosomal protein L 100.0 1.9E-40 6.4E-45 265.3 -0.3 117 79-213 4-120 (121)
6 1ctf_A Ribosomal protein L7/L1 100.0 4.6E-30 1.6E-34 190.3 6.9 71 142-213 3-73 (74)
7 1dd4_C 50S ribosomal protein L 99.1 1.8E-10 6E-15 76.3 5.1 34 79-112 2-35 (40)
8 1zav_U 50S ribosomal protein L 98.5 9.7E-08 3.3E-12 59.6 3.4 28 80-107 3-30 (30)
9 2cp9_A EF-TS, EF-TSMT, elongat 82.2 0.96 3.3E-05 32.2 2.9 26 160-185 10-35 (64)
10 2jml_A DNA binding domain/tran 48.9 13 0.00044 25.8 2.9 28 158-185 51-78 (81)
11 1mul_A NS2, HU-2, DNA binding 37.1 18 0.00063 25.7 2.2 34 159-192 3-36 (90)
12 1b8z_A Protein (histonelike pr 36.1 19 0.00066 25.5 2.2 34 159-192 3-36 (90)
13 3rhi_A DNA-binding protein HU; 35.5 16 0.00056 26.3 1.7 35 158-192 5-39 (93)
14 2o97_B NS1, HU-1, DNA-binding 34.4 20 0.00068 25.6 2.0 35 158-192 2-36 (90)
15 1p71_A DNA-binding protein HU; 33.9 22 0.00075 25.5 2.2 35 158-192 2-36 (94)
16 3c4i_A DNA-binding protein HU 33.9 22 0.00074 25.9 2.2 35 158-192 2-36 (99)
17 1q08_A Zn(II)-responsive regul 33.4 50 0.0017 23.2 4.0 25 158-183 4-28 (99)
18 1owf_A IHF-alpha, integration 30.6 26 0.00091 25.4 2.2 35 158-192 4-38 (99)
19 1ctf_A Ribosomal protein L7/L1 28.2 55 0.0019 23.8 3.5 23 78-100 20-42 (74)
20 1exe_A Transcription factor 1; 27.8 21 0.00071 26.1 1.2 34 159-192 3-36 (99)
21 2rnn_A E3 SUMO-protein ligase 27.7 88 0.003 24.4 4.8 25 77-101 27-51 (114)
22 1owf_B IHF-beta, integration H 27.6 34 0.0011 24.5 2.3 35 158-192 2-37 (94)
23 1r8e_A Multidrug-efflux transp 25.9 73 0.0025 26.0 4.4 28 157-185 50-77 (278)
24 3a1y_A 50S ribosomal protein P 23.4 34 0.0012 23.3 1.5 16 197-212 19-34 (58)
25 2p63_A Cell division control p 22.9 77 0.0026 22.0 3.2 26 81-106 28-53 (56)
26 3gpv_A Transcriptional regulat 22.8 95 0.0033 24.0 4.3 25 158-183 61-85 (148)
27 1in0_A YAJQ protein, HI1034; a 22.7 39 0.0013 28.0 2.0 63 148-212 47-122 (163)
28 3iz5_t 60S acidic ribosomal pr 21.7 72 0.0025 24.4 3.3 19 78-96 41-59 (110)
29 2np2_A HBB; protein-DNA comple 21.4 41 0.0014 24.8 1.7 35 158-192 10-49 (108)
30 2w9r_A YLJA, ATP-dependent CLP 20.8 2.8E+02 0.0094 21.0 7.0 73 141-214 22-104 (108)
31 2j01_L 50S ribosomal protein L 20.7 95 0.0032 24.5 3.8 27 79-106 73-99 (125)
32 3izc_v 60S acidic ribosomal pr 20.6 38 0.0013 25.8 1.4 26 78-106 36-61 (106)
33 1r8d_A Transcription activator 20.5 1.3E+02 0.0046 21.6 4.4 26 158-184 47-72 (109)
34 2zjq_5 50S ribosomal protein L 20.3 1E+02 0.0034 24.3 3.9 27 79-106 70-96 (122)
35 1l0i_A Acyl carrier protein; a 20.1 92 0.0031 20.3 3.2 22 89-110 34-55 (78)
36 3gp4_A Transcriptional regulat 20.0 1.2E+02 0.0041 23.3 4.3 25 158-183 47-71 (142)
No 1
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.8e-44 Score=293.62 Aligned_cols=135 Identities=31% Similarity=0.455 Sum_probs=109.7
Q ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCc-chhhhcccCccceeeEEEeecCC
Q 045414 78 LRLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGG-AAAKEELKPEKTAFDLKLESYDA 156 (214)
Q Consensus 78 ~KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~-aa~~ee~~~EKT~FdV~L~~~~a 156 (214)
+||++|+|+|++|||+|++||++.|+++|||+++++++++++++ + +++++++++ +.++.++++|||+|||+|++|++
T Consensus 1 ~kv~~ive~i~~LtllE~~eLv~~leekfgv~aaa~~~~~~~~~-~-~~~~a~a~~~~~~~a~~~eEKteFdV~L~~~~a 78 (137)
T 2ftc_E 1 PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVP-G-AAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKP 78 (137)
T ss_pred CcHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcccccccccccc-c-CCCCccccccccccccccccCCeeEEEeeccCc
Confidence 48999999999999999999999999999999875433211100 1 100000101 01112235799999999999998
Q ss_pred chhHHHHHHHHHh-hcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEeC
Q 045414 157 NAKVKIIKELRTF-TDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIME 214 (214)
Q Consensus 157 ~kKI~vIK~VR~i-T~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~VelE 214 (214)
++||+|||+||++ |||||||||+|||++|++||+|+||+|||+||++|+++||+|+||
T Consensus 79 ~~KI~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~Vele 137 (137)
T 2ftc_E 79 VDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 137 (137)
T ss_pred cchhHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 8999999999997 999999999999999999999999999999999999999999997
No 2
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=100.00 E-value=3.4e-40 Score=265.06 Aligned_cols=121 Identities=39% Similarity=0.501 Sum_probs=104.1
Q ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCch
Q 045414 79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANA 158 (214)
Q Consensus 79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~k 158 (214)
++++|+|+|++|||+|++||++.|+++|||+++++++++ +++ ++ + + + + +..+|||+|||+|++|+ ++
T Consensus 4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaapva~~-~~~---~~-a--~-~-a---~a~eEKteFdV~L~~~~-~~ 70 (125)
T 2j01_L 4 DIERIKEELSQATVLELKQLIDALKEAWGVTAAAPVAVA-AAP---AA-G--A-A-A---APAEEKTEFDVILKEAG-AK 70 (125)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCcccccccc-ccC---cc-c--c-c-c---ccccccceeEEEEeeCC-cc
Confidence 468999999999999999999999999999987544322 111 01 0 0 1 0 12469999999999997 79
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414 159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIM 213 (214)
Q Consensus 159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Vel 213 (214)
||+|||+||++|||||||||+|||++ ++||+|+||+|||+||++|+++||+|+|
T Consensus 71 KI~VIK~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel 124 (125)
T 2j01_L 71 KLEVIKELRAITGLGLKEAKDLAEKG-GPVKEGVSKQEAEEIKKKLEAVGAVVEL 124 (125)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 99999999999999999999999999 9999999999999999999999999997
No 3
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=100.00 E-value=5.4e-40 Score=262.97 Aligned_cols=118 Identities=41% Similarity=0.543 Sum_probs=103.1
Q ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCch
Q 045414 79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANA 158 (214)
Q Consensus 79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~k 158 (214)
.+++|+|+|++|||+|++||++.|+++|||+++++++++ + + + + ++ +..+|||+|||+|++|+ ++
T Consensus 4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaap~a~a--~--~--~-a---~a-----~a~eEKteFdV~L~~~~-~~ 67 (122)
T 2zjq_5 4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSGG--G--A--G-A---AS-----PAAEEKTEFDVVLIDAG-AS 67 (122)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCccccccc--C--C--C-c---cc-----ccccccceeEEEEecCC-cc
Confidence 468999999999999999999999999999986543211 1 0 0 0 01 12369999999999997 79
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414 159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIM 213 (214)
Q Consensus 159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Vel 213 (214)
||+|||+||++|||||||||+|||++ ++||+|+||+|||+||++|+++||+|+|
T Consensus 68 KI~VIK~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel 121 (122)
T 2zjq_5 68 KINVIKEIRGITGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARVEL 121 (122)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 99999999999999999999999999 9999999999999999999999999997
No 4
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=100.00 E-value=6.5e-41 Score=270.14 Aligned_cols=123 Identities=43% Similarity=0.599 Sum_probs=104.0
Q ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCch
Q 045414 79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANA 158 (214)
Q Consensus 79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~k 158 (214)
.+++|+|+|++|||+|++||++.|+++|||+++++++++ +++ ++ + + +++ +..+|||+|||+|++|+ ++
T Consensus 2 ~~~~ive~i~~ltllE~~eLv~~lee~fgv~aaapva~~---~~~-~~-~--~-a~~---~a~eEKteFdV~L~~~~-~~ 69 (128)
T 1dd3_A 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVA---AAP-VA-G--A-AAG---AAQEEKTEFDVVLKSFG-QN 69 (128)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHH---HHH-HH-H--H-HHH---HHHHTTSSEEEEEEECT-TC
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCcchhhcc---ccc-cc-c--c-ccc---ccccccceeeEEEecCC-cc
Confidence 368999999999999999999999999999976433221 000 00 0 0 010 12368999999999997 79
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhhcch---hhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414 159 KVKIIKELRTFTDLGLKEAKDLVEKTPA---VLKKGVLKEEAEKIIEKMKAVGGKVIM 213 (214)
Q Consensus 159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~---vIKe~vsKEEAE~iKkkLEaaGA~Vel 213 (214)
||+|||+||++|||||||||+|||++|+ +||+|+||+|||+||++|+++||+|+|
T Consensus 70 KI~VIK~VR~itgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~Vel 127 (128)
T 1dd3_A 70 KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL 127 (128)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 9999999999999999999999999999 999999999999999999999999997
No 5
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=100.00 E-value=1.9e-40 Score=265.31 Aligned_cols=117 Identities=37% Similarity=0.541 Sum_probs=27.0
Q ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCCcccccCCCcccccccccccCcchhhhcccCccceeeEEEeecCCch
Q 045414 79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPPVVGVLKPGAAGFTGMAMKTGGAAAKEELKPEKTAFDLKLESYDANA 158 (214)
Q Consensus 79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~~~~~~~~ga~~~~g~a~~a~~aa~~ee~~~EKT~FdV~L~~~~a~k 158 (214)
.+++|+|+|++||++|++||++.|+++|||+++++++ + + ++ ++ +..+|||+|||+|++|+ ++
T Consensus 4 ~~~~ive~i~~ltllE~~eLv~~lee~fgVsaaa~~a----~--~-a~------~a----~a~eEKteFdV~L~~~g-~~ 65 (121)
T 3sgf_J 4 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVA----V--A-AG------PV----EAAEEKTEFDVILKAAG-AN 65 (121)
T ss_dssp CHHHHHHGGGGCHHHHHHHHHTTTCSCC----------------------------------------------------
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCcccccc----c--c-cc------cc----ccccccceeEEEEecCc-hh
Confidence 5789999999999999999999999999999765321 1 0 00 00 12368999999999996 69
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414 159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIM 213 (214)
Q Consensus 159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Vel 213 (214)
||+|||+||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus 66 Ki~VIK~VR~itgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~Vel 120 (121)
T 3sgf_J 66 KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120 (121)
T ss_dssp -------------------------------------------------------
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEee
Confidence 9999999999999999999999999999999999999999999999999999987
No 6
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=99.96 E-value=4.6e-30 Score=190.26 Aligned_cols=71 Identities=48% Similarity=0.687 Sum_probs=65.9
Q ss_pred CccceeeEEEeecCCchhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHCCcEEEe
Q 045414 142 PEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGVLKEEAEKIIEKMKAVGGKVIM 213 (214)
Q Consensus 142 ~EKT~FdV~L~~~~a~kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~vsKEEAE~iKkkLEaaGA~Vel 213 (214)
+|||+|||+|++|+ ++||+|||+||++|||||||||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus 3 eEkteFdV~L~~~~-~~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~Vel 73 (74)
T 1ctf_A 3 EEKTEFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 73 (74)
T ss_dssp ----CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred cccceeEEEEeeCC-cchhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 58999999999996 799999999999999999999999999999999999999999999999999999997
No 7
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=99.06 E-value=1.8e-10 Score=76.31 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=31.4
Q ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHhhCCCCCC
Q 045414 79 RLHELVDEVSGLTLSESAELGLIMMKKQGMTEPP 112 (214)
Q Consensus 79 KV~~Ivd~I~~LTLlE~sELv~~leekfGVs~~~ 112 (214)
++++|+|+|++||++|++||++.||++|||++++
T Consensus 2 ~~~~iie~i~~lTvlE~~eLvk~leekfGVsaaa 35 (40)
T 1dd4_C 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAA 35 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSCC
T ss_pred CHHHHHHHHHhCcHHHHHHHHHHHHHHHCCCccc
Confidence 4789999999999999999999999999998753
No 8
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=98.47 E-value=9.7e-08 Score=59.64 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhC
Q 045414 80 LHELVDEVSGLTLSESAELGLIMMKKQG 107 (214)
Q Consensus 80 V~~Ivd~I~~LTLlE~sELv~~leekfG 107 (214)
+++|+|+|++||++|++||++.|+++||
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999998
No 9
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=82.17 E-value=0.96 Score=32.19 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhhcc
Q 045414 160 VKIIKELRTFTDLGLKEAKDLVEKTP 185 (214)
Q Consensus 160 I~vIK~VR~iT~LgLkEAK~lVE~~P 185 (214)
...||+||+.||.|.+|+|+.++.+-
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~ 35 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCG 35 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 36799999999999999999776654
No 10
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=48.87 E-value=13 Score=25.79 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhhcc
Q 045414 158 AKVKIIKELRTFTDLGLKEAKDLVEKTP 185 (214)
Q Consensus 158 kKI~vIK~VR~iT~LgLkEAK~lVE~~P 185 (214)
..+..|+.+|.-.|++|+|.|++++..|
T Consensus 51 ~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 51 EAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 5677778887667999999999998766
No 11
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=37.14 E-value=18 Score=25.67 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCC
Q 045414 159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192 (214)
Q Consensus 159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~v 192 (214)
|-.+|+.|.+-++|.-++++..|+.+-.+|.+.+
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 1mul_A 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESL 36 (90)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999887776543
No 12
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=36.13 E-value=19 Score=25.51 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCC
Q 045414 159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192 (214)
Q Consensus 159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~v 192 (214)
|-.+|+.|.+.++|.-++++..|+.+-.+|.+.+
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 1b8z_A 3 KKELIDRVAKKAGAKKKDVKLILDTILETITEAL 36 (90)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999887776543
No 13
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=35.51 E-value=16 Score=26.30 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCC
Q 045414 158 AKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192 (214)
Q Consensus 158 kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~v 192 (214)
+|-.+|+.|.+-+||.-++++..|+.+-.+|.+.+
T Consensus 5 tk~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L 39 (93)
T 3rhi_A 5 NKTELIKNVAQNAEISQKEATVVVQTVVESITNTL 39 (93)
T ss_dssp --CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999887776543
No 14
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=34.44 E-value=20 Score=25.56 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCC
Q 045414 158 AKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192 (214)
Q Consensus 158 kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~v 192 (214)
+|-.+|+.|.+-++|.-++++..|+.+-.+|.+.+
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 2o97_B 2 NKSQLIDKIAAGADISKAAAGRALDAIIASVTESL 36 (90)
T ss_dssp BHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 36688999999999999999999999877776543
No 15
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=33.88 E-value=22 Score=25.53 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCC
Q 045414 158 AKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192 (214)
Q Consensus 158 kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~v 192 (214)
+|-.+|+.|.+-++|.-++++..|+.+-.+|.+.+
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (94)
T 1p71_A 2 NKGELVDAVAEKASVTKKQADAVLTAALETIIEAV 36 (94)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 36689999999999999999999999877776543
No 16
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=33.87 E-value=22 Score=25.91 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCC
Q 045414 158 AKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192 (214)
Q Consensus 158 kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~v 192 (214)
+|-.+|+.|.+-++|.-++++.+|+.+-.+|.+.+
T Consensus 2 tk~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 3c4i_A 2 NKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAV 36 (99)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 36689999999999999999999999887776543
No 17
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=33.43 E-value=50 Score=23.18 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhh
Q 045414 158 AKVKIIKELRTFTDLGLKEAKDLVEK 183 (214)
Q Consensus 158 kKI~vIK~VR~iT~LgLkEAK~lVE~ 183 (214)
.++..|+..|. +|++|.|-|++++.
T Consensus 4 ~rL~~I~~lr~-lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 4 QRLKFIRHARQ-LGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 36777888876 59999999999974
No 18
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=30.59 E-value=26 Score=25.37 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCC
Q 045414 158 AKVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192 (214)
Q Consensus 158 kKI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~v 192 (214)
+|-.+|+.|.+.++|.-++++..|+.+-.+|.+.+
T Consensus 4 ~k~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~L 38 (99)
T 1owf_A 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRAL 38 (99)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999887776543
No 19
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=28.19 E-value=55 Score=23.79 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred hhHHHHHHHHhCCCHHHHHHHHH
Q 045414 78 LRLHELVDEVSGLTLSESAELGL 100 (214)
Q Consensus 78 ~KV~~Ivd~I~~LTLlE~sELv~ 100 (214)
-+|...|.+|-+|.|.|+.+||+
T Consensus 20 i~vIK~VR~itgLgLkEAK~lVe 42 (74)
T 1ctf_A 20 VAVIKAVRGATGLGLKEAKDLVE 42 (74)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 36788899999999999999998
No 20
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=27.76 E-value=21 Score=26.08 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHhhcchhhhcCC
Q 045414 159 KVKIIKELRTFTDLGLKEAKDLVEKTPAVLKKGV 192 (214)
Q Consensus 159 KI~vIK~VR~iT~LgLkEAK~lVE~~P~vIKe~v 192 (214)
|-.+|+.|.+.++|.-++++..|+.+-.+|.+.+
T Consensus 3 k~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 1exe_A 3 KTELIKAIAQDTGLTQVSVSKMLASFEKIITETV 36 (99)
T ss_dssp TTHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999988777654
No 21
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=27.67 E-value=88 Score=24.37 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHhCCCHHHHHHHHHH
Q 045414 77 VLRLHELVDEVSGLTLSESAELGLI 101 (214)
Q Consensus 77 S~KV~~Ivd~I~~LTLlE~sELv~~ 101 (214)
++.+...+..++.||+-|+.+.++.
T Consensus 27 ~~e~~~~~~~l~kLtVaELK~~cr~ 51 (114)
T 2rnn_A 27 RNEVEETITLMELLKVSELKDICRS 51 (114)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4899999999999999998777664
No 22
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=27.56 E-value=34 Score=24.46 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHh-hcCChHHHHHHHhhcchhhhcCC
Q 045414 158 AKVKIIKELRTF-TDLGLKEAKDLVEKTPAVLKKGV 192 (214)
Q Consensus 158 kKI~vIK~VR~i-T~LgLkEAK~lVE~~P~vIKe~v 192 (214)
+|-.+|+.|.+. ++|.-++++..|+.+-.+|.+.+
T Consensus 2 tk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~L 37 (94)
T 1owf_B 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTL 37 (94)
T ss_dssp BHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 366899999988 79999999999999877766543
No 23
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.93 E-value=73 Score=25.97 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHhhcc
Q 045414 157 NAKVKIIKELRTFTDLGLKEAKDLVEKTP 185 (214)
Q Consensus 157 ~kKI~vIK~VR~iT~LgLkEAK~lVE~~P 185 (214)
=.++..|+.+|+. |++|+|.|++++..+
T Consensus 50 ~~~l~~i~~l~~~-g~~l~~i~~~~~~~~ 77 (278)
T 1r8e_A 50 LIHLDLIKSLKYI-GTPLEEMKKAQDLEM 77 (278)
T ss_dssp GGHHHHHHHHHHT-TCCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHhCh
Confidence 4678888888764 999999999998653
No 24
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=23.39 E-value=34 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=14.0
Q ss_pred HHHHHHHHHHCCcEEE
Q 045414 197 AEKIIEKMKAVGGKVI 212 (214)
Q Consensus 197 AE~iKkkLEaaGA~Ve 212 (214)
+++|++.|+++|.+|+
T Consensus 19 ~~~I~~il~aaGveve 34 (58)
T 3a1y_A 19 EENLKAVLQAAGVEPE 34 (58)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCcc
Confidence 6889999999998874
No 25
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=22.90 E-value=77 Score=22.00 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhh
Q 045414 81 HELVDEVSGLTLSESAELGLIMMKKQ 106 (214)
Q Consensus 81 ~~Ivd~I~~LTLlE~sELv~~leekf 106 (214)
.-|..-+++|+--|++||+..|++-+
T Consensus 28 nLiF~Lvs~m~RseLSDl~TlikDNL 53 (56)
T 2p63_A 28 NLLFRLVANMDRSELSDLGTLIKDNL 53 (56)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 34556788999999999999999865
No 26
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.81 E-value=95 Score=23.95 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhh
Q 045414 158 AKVKIIKELRTFTDLGLKEAKDLVEK 183 (214)
Q Consensus 158 kKI~vIK~VR~iT~LgLkEAK~lVE~ 183 (214)
.++..|+.+|+ +|++|+|.|++++.
T Consensus 61 ~~l~~I~~lr~-~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 61 KYLEMILCLKN-TGMPIQKIKQFIDW 85 (148)
T ss_dssp HHHHHHHHHHT-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHh
Confidence 56666777665 69999999999984
No 27
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=22.72 E-value=39 Score=27.97 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=42.3
Q ss_pred eEEEeecCCchhHHHHHHH-HHh-h--cCChHHHH--HHHhh-------cchhhhcCCCHHHHHHHHHHHHHCCcEEE
Q 045414 148 DLKLESYDANAKVKIIKEL-RTF-T--DLGLKEAK--DLVEK-------TPAVLKKGVLKEEAEKIIEKMKAVGGKVI 212 (214)
Q Consensus 148 dV~L~~~~a~kKI~vIK~V-R~i-T--~LgLkEAK--~lVE~-------~P~vIKe~vsKEEAE~iKkkLEaaGA~Ve 212 (214)
.++|.+- ++.|+.-++.| +.- . |+.|+--. + ++. .-..||+|+++|.|.+|.+.+++.+-+|.
T Consensus 47 ~i~l~a~-~d~kl~qv~DiL~~kl~KRgid~k~ld~~~-~~~~sG~~vrq~~~lk~GI~~e~AKkIvK~IKdsklKVq 122 (163)
T 1in0_A 47 TIKITTE-SDFQLEQLIEILIGSCIKRGIEHSSLDIPA-ESEHHGKLYSKEIKLKQGIETEMAKKITKLVKDSKIKVQ 122 (163)
T ss_dssp EEEEEES-CHHHHHHHHHHHHHHHHHTTCCGGGEECCS-SCEEETTEEEEEEEECCSCCHHHHHHHHHHHHHHTCSEE
T ss_pred EEEEEeC-CHHHHHHHHHHHHHHHHHcCCCchhcccCC-CccccCCEEEEEEEeecccCHHHHHHHHHHHHhcCCcce
Confidence 5788774 46788776644 533 2 66665111 0 011 13468999999999999999999988764
No 28
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=21.66 E-value=72 Score=24.44 Aligned_cols=19 Identities=0% Similarity=-0.092 Sum_probs=11.9
Q ss_pred hhHHHHHHHHhCCCHHHHH
Q 045414 78 LRLHELVDEVSGLTLSESA 96 (214)
Q Consensus 78 ~KV~~Ivd~I~~LTLlE~s 96 (214)
.++..++..|.+-++-|+-
T Consensus 41 ~~~~lfakaL~gknI~eLI 59 (110)
T 3iz5_t 41 YWPALFAKLLEKRSVDDLI 59 (110)
T ss_dssp HHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHH
Confidence 3556667777777765443
No 29
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=21.37 E-value=41 Score=24.84 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.2
Q ss_pred hhHHHHHHHH-----HhhcCChHHHHHHHhhcchhhhcCC
Q 045414 158 AKVKIIKELR-----TFTDLGLKEAKDLVEKTPAVLKKGV 192 (214)
Q Consensus 158 kKI~vIK~VR-----~iT~LgLkEAK~lVE~~P~vIKe~v 192 (214)
+|-.+|+.|. +.++|.-++++..|+.+-.+|.+.+
T Consensus 10 tk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~~L 49 (108)
T 2np2_A 10 TKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNL 49 (108)
T ss_dssp EHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678999998 7899999999999999877766543
No 30
>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*
Probab=20.80 E-value=2.8e+02 Score=20.95 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=54.7
Q ss_pred cCccceeeEEEeecCCchhHHHHHHHHHhhcCChHHHHHHHhhc----chhhhcCCCHHHHHHHHHHHHH------CCcE
Q 045414 141 KPEKTAFDLKLESYDANAKVKIIKELRTFTDLGLKEAKDLVEKT----PAVLKKGVLKEEAEKIIEKMKA------VGGK 210 (214)
Q Consensus 141 ~~EKT~FdV~L~~~~a~kKI~vIK~VR~iT~LgLkEAK~lVE~~----P~vIKe~vsKEEAE~iKkkLEa------aGA~ 210 (214)
..+..-|.|+|-.=|-..-=-||..+..+.+++..+|-++.-.+ =.++.. -++|.||....++.. .|-.
T Consensus 22 ~~~p~~y~ViL~NDd~ttmefVv~vL~~~f~~~~~~A~~iml~VH~~G~avv~~-~~~e~AE~k~~~l~~~ar~~~~pL~ 100 (108)
T 2w9r_A 22 LKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGV-FTAEVAETKVAMVNKYARENEHPLL 100 (108)
T ss_dssp CCCCCEEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEE-EEHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred cCCCCceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhhCCCEEEEE-eCHHHHHHHHHHHHHHHHhCCCCcE
Confidence 34446799999775545566899999999999999999998654 234444 489999999999985 4555
Q ss_pred EEeC
Q 045414 211 VIME 214 (214)
Q Consensus 211 VelE 214 (214)
+.||
T Consensus 101 ~t~E 104 (108)
T 2w9r_A 101 CTLE 104 (108)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 31
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=20.70 E-value=95 Score=24.53 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=24.1
Q ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 045414 79 RLHELVDEVSGLTLSESAELGLIMMKKQ 106 (214)
Q Consensus 79 KV~~Ivd~I~~LTLlE~sELv~~leekf 106 (214)
+|...|..|-+|.|.|+.+||+.. +.+
T Consensus 73 ~VIK~VR~itgLgLkEAK~lVe~a-~~i 99 (125)
T 2j01_L 73 EVIKELRAITGLGLKEAKDLAEKG-GPV 99 (125)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHH-HHH
Confidence 788889999999999999999988 655
No 32
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=20.55 E-value=38 Score=25.83 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=14.2
Q ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 045414 78 LRLHELVDEVSGLTLSESAELGLIMMKKQ 106 (214)
Q Consensus 78 ~KV~~Ivd~I~~LTLlE~sELv~~leekf 106 (214)
.++..++..+.+-++- ||+..-.++|
T Consensus 36 ~~~~~f~~aL~gkdI~---eLIa~g~~kl 61 (106)
T 3izc_v 36 EKVSSVLSALEGKSVD---ELITEGNEKL 61 (106)
T ss_dssp HHHHHHHHHHTTCCHH---HHHHSCC---
T ss_pred HHHHHHHHHcCCCCHH---HHHHhhhHHh
Confidence 4677777777777664 4444333444
No 33
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=20.53 E-value=1.3e+02 Score=21.61 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhhc
Q 045414 158 AKVKIIKELRTFTDLGLKEAKDLVEKT 184 (214)
Q Consensus 158 kKI~vIK~VR~iT~LgLkEAK~lVE~~ 184 (214)
.++..|+.+|+ .|++|.+.|.+++..
T Consensus 47 ~~l~~I~~l~~-~G~~l~~I~~~l~~~ 72 (109)
T 1r8d_A 47 ERLQQILFFKE-IGFRLDEIKEMLDHP 72 (109)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHCT
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHhCC
Confidence 45556666553 599999999999864
No 34
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=20.27 E-value=1e+02 Score=24.32 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=24.1
Q ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 045414 79 RLHELVDEVSGLTLSESAELGLIMMKKQ 106 (214)
Q Consensus 79 KV~~Ivd~I~~LTLlE~sELv~~leekf 106 (214)
+|...|..|-+|.|.|+.+||+.. +.+
T Consensus 70 ~VIK~VR~itgLgLkEAK~lVe~a-~~i 96 (122)
T 2zjq_5 70 NVIKEIRGITGLGLKEAKDMSEKG-GVL 96 (122)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHH-HHH
Confidence 688889999999999999999988 554
No 35
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=20.11 E-value=92 Score=20.34 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCC
Q 045414 89 GLTLSESAELGLIMMKKQGMTE 110 (214)
Q Consensus 89 ~LTLlE~sELv~~leekfGVs~ 110 (214)
++.=+.+.+|+..|+++||+.-
T Consensus 34 G~DSl~~~el~~~le~~fgi~i 55 (78)
T 1l0i_A 34 GADSLDTVELVMALEEEFDTEI 55 (78)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 4555677899999999999964
No 36
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.03 E-value=1.2e+02 Score=23.29 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHhh
Q 045414 158 AKVKIIKELRTFTDLGLKEAKDLVEK 183 (214)
Q Consensus 158 kKI~vIK~VR~iT~LgLkEAK~lVE~ 183 (214)
.++..|+.+|+ +|++|+|.|.+++.
T Consensus 47 ~~l~~I~~lr~-~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 47 RWILFTRQMRR-AGLSIEALIDYLAL 71 (142)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 56777777764 69999999999974
Done!