BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045417
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 132 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 177
+ECAVCL E ED E R +P+C H FH EC+D WL SH+TCP+CR
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 128 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183
VG G LEC VC ++ E++R +P C+H+FH CI WLE H +CPVCR +L +
Sbjct: 12 VGSG-LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN 179
C VC+ +FE + LR++P C+H FH +C+D WL+++ TCP+CR++
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRAD 69
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183
+C +CL+ E+ E +R +P C H+FH C+D WL ++ CP+CR ++ ++
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 176
CAVCL +F+ + L + P C H FH +C+ WLE CP+C
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 109 REVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE 168
+E ID P + ++ VG+ + C +C +E+ + +P C H FH C+ WL+
Sbjct: 19 KESIDALPEILVTEDHG-AVGQ-EMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQ 75
Query: 169 SHTTCPVCR 177
TCPVCR
Sbjct: 76 KSGTCPVCR 84
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 177
EC +C++ D LI C H F +CID W + H CP+CR
Sbjct: 17 ECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 126 LKVGKGALECAVCLNEF-EDDETLRLI--PKCDHVFHPECIDAWLESHTTCPVCRSNL 180
+ +G G + C +C++ + E + RLI +C HVF +C+ L++ TCP CR +
Sbjct: 66 IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 128 VGKGALECAVCLNEF-EDDETLRLI--PKCDHVFHPECIDAWLESHTTCPVCRSNL 180
+G G + C +C++ + E + RLI +C HVF +C+ L++ TCP CR +
Sbjct: 3 MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 128 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 184
V + L+C +C F + TL C H F CI+ W++ CP+CR ++ S+
Sbjct: 49 VLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 128 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 184
V + L+C +C F + TL C H F CI+ W++ CP+CR ++ S+
Sbjct: 49 VLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 128 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183
V + L+C +C F + TL C H F CI+ W++ CP+CR ++ S+
Sbjct: 60 VLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSK 111
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 131 GALECAVCLNEF-EDDETLRLI--PKCDHVFHPECIDAWLESHTTCPVCRSNL 180
G + C +C++ + E + RLI +C HVF +C+ L++ TCP CR +
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 131 GALECAVCLNEF-EDDETLRLI--PKCDHVFHPECIDAWLESHTTCPVCRSNL 180
G + C +C++ + E + RLI +C HVF +C+ L++ TCP CR +
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 123 VKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 176
+ +K L C +C FE +IP+C H + CI +L T CP C
Sbjct: 13 LAVMKTIDDLLRCGIC---FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 133 LECAVCLNEF-EDDETLRLI--PKCDHVFHPECIDAWLESHTTCPVCRSNL 180
+ C +C++ + E + RLI +C HVF +C+ L++ TCP CR +
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183
C C E + ++ + + +C+H FH C+ W++ + CP+C+ + +
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 135 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 175
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 51 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 135 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 175
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 40 CAICRNHIXDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 135 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 175
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 32 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 86
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 135 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 175
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 42 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 135 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 175
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 40 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLASE 183
L C +CL+ ++ T + +C H F +CI L S + CP CR L S+
Sbjct: 54 LMCPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKKLVSK 102
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 128 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182
+ A C +CL ED + C H F CI W+ + TCP+C+ + S
Sbjct: 1 MATVAERCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 176
G+ C +CL + + + C H+ H C + L+ CP+C
Sbjct: 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 176
L C +C F D T I +C H F CI +LE+ CP+C
Sbjct: 12 LMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 176
L C +C F D T I +C H F CI +LE+ CP+C
Sbjct: 16 LMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 135 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 175
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 34 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 88
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 176
L C +C F D T I +C H F CI +LE+ CP+C
Sbjct: 16 LMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 184
C +C E+D+ +++ P C H+ C+ AW ES CP CR + +EP
Sbjct: 341 CKICA---ENDKDVKIEP-CGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEP 388
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 135 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 175
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLASE 183
L C +CL+ ++ T + +C H F +CI L S + CP CR L S+
Sbjct: 55 LMCPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKKLVSK 103
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLASE 183
L C +CL+ ++ T + +C H F +CI L S + CP CR L S+
Sbjct: 35 LMCPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKKLVSK 83
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 184
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 337 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 384
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 184
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 337 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 384
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 184
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 335 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 184
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 335 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 184
C +C E+D+ +++ P C H+ C+ AW ES CP CR + +EP
Sbjct: 29 CKICA---ENDKDVKIEP-CGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEP 76
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 132 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTT---CPVC 176
LEC +C+ F +++ + C H +C++ L S CP C
Sbjct: 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 184
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 27 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 74
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 184
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 30 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 77
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 135 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 176
C +CL + + + C H+ H C + L+ CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3HTK|C Chain C, Crystal Structure Of Mms21 And Smc5 Complex
Length = 267
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 129 GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTT--CP 174
GK L C + +E R KC+HVF + I +L+ +TT CP
Sbjct: 178 GKIELTCPITCKPYEAPLISR---KCNHVFDRDGIQNYLQGYTTRDCP 222
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 26.9 bits (58), Expect = 6.3, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 152 PKCDHVFHPECIDAWLESHTTCPVCRS 178
P C + +P C+ S +CP+C S
Sbjct: 63 PHCKSILNPYCVIDPRNSSWSCPICNS 89
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 26.9 bits (58), Expect = 6.3, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 152 PKCDHVFHPECIDAWLESHTTCPVCRS 178
P C + +P C+ S +CP+C S
Sbjct: 59 PHCKSILNPYCVIDPRNSSWSCPICNS 85
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 131 GALE-------CAVCLNEFEDDETLRLIPKCDHVFHPECIDAW---LESHTTCPVC 176
GALE C+VCL ++ +I +C H F CI W LE CPVC
Sbjct: 7 GALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,974,887
Number of Sequences: 62578
Number of extensions: 120554
Number of successful extensions: 295
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 67
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)