Query 045417
Match_columns 184
No_of_seqs 216 out of 1826
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 23:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 1.1E-19 3.8E-24 126.2 8.1 80 100-182 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 7.3E-19 2.5E-23 117.5 3.9 68 112-183 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 7.3E-18 2.5E-22 105.8 4.0 51 131-181 4-54 (55)
4 2ecl_A Ring-box protein 2; RNF 99.7 3.2E-17 1.1E-21 111.3 4.7 52 131-182 14-76 (81)
5 2kiz_A E3 ubiquitin-protein li 99.7 5.6E-17 1.9E-21 106.4 5.7 54 129-183 11-64 (69)
6 2ep4_A Ring finger protein 24; 99.7 5E-17 1.7E-21 108.0 5.4 52 130-182 13-64 (74)
7 2ect_A Ring finger protein 126 99.7 8.2E-17 2.8E-21 108.0 4.9 53 130-183 13-65 (78)
8 3dpl_R Ring-box protein 1; ubi 99.6 3.4E-16 1.2E-20 111.6 4.0 65 116-181 21-100 (106)
9 2ecm_A Ring finger and CHY zin 99.6 7.6E-16 2.6E-20 96.4 4.6 50 131-181 4-54 (55)
10 2ea6_A Ring finger protein 4; 99.6 1.1E-15 3.8E-20 99.7 4.2 52 130-182 13-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.6 1.1E-15 3.6E-20 100.5 3.2 53 130-183 8-64 (71)
12 1v87_A Deltex protein 2; ring- 99.6 2.6E-15 8.9E-20 107.7 5.2 51 131-182 24-94 (114)
13 2xeu_A Ring finger protein 4; 99.5 2E-15 6.8E-20 97.1 2.8 52 131-183 2-57 (64)
14 4a0k_B E3 ubiquitin-protein li 99.5 4.3E-16 1.5E-20 112.8 -0.7 68 115-182 31-112 (117)
15 2d8s_A Cellular modulator of i 99.5 8.1E-15 2.8E-19 99.4 4.2 51 130-182 13-70 (80)
16 2ecn_A Ring finger protein 141 99.5 5.3E-15 1.8E-19 97.1 2.2 48 130-182 13-60 (70)
17 2djb_A Polycomb group ring fin 99.5 2.3E-14 7.7E-19 94.8 5.0 50 130-182 13-62 (72)
18 1chc_A Equine herpes virus-1 r 99.5 1.8E-14 6.2E-19 93.9 4.1 48 131-181 4-51 (68)
19 2d8t_A Dactylidin, ring finger 99.5 2.4E-14 8.1E-19 94.4 3.4 48 130-181 13-60 (71)
20 2ct2_A Tripartite motif protei 99.5 6.1E-14 2.1E-18 95.6 5.3 52 130-182 13-68 (88)
21 2csy_A Zinc finger protein 183 99.4 2.6E-13 9E-18 91.5 5.2 48 130-181 13-60 (81)
22 2ecy_A TNF receptor-associated 99.4 3.1E-13 1.1E-17 87.6 5.3 50 130-183 13-63 (66)
23 4ap4_A E3 ubiquitin ligase RNF 99.4 1.1E-13 3.7E-18 100.9 3.4 53 130-183 5-61 (133)
24 2ct0_A Non-SMC element 1 homol 99.4 2.3E-13 7.9E-18 90.7 4.5 49 131-182 14-64 (74)
25 2ysl_A Tripartite motif-contai 99.4 2.4E-13 8.2E-18 89.6 4.5 50 130-183 18-70 (73)
26 4ayc_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 102.4 2.8 48 131-182 52-99 (138)
27 1g25_A CDK-activating kinase a 99.4 5.2E-13 1.8E-17 86.3 4.4 51 131-182 2-55 (65)
28 2yur_A Retinoblastoma-binding 99.4 4.6E-13 1.6E-17 89.0 4.0 49 130-181 13-63 (74)
29 4ap4_A E3 ubiquitin ligase RNF 99.3 3.3E-13 1.1E-17 98.3 3.1 53 129-182 69-125 (133)
30 2ecw_A Tripartite motif-contai 99.3 1.1E-12 3.6E-17 88.6 5.2 48 131-182 18-71 (85)
31 3lrq_A E3 ubiquitin-protein li 99.3 5.1E-13 1.7E-17 93.8 2.9 49 131-182 21-70 (100)
32 2y43_A E3 ubiquitin-protein li 99.3 9.3E-13 3.2E-17 92.0 3.7 49 131-182 21-69 (99)
33 2ckl_A Polycomb group ring fin 99.3 2E-12 6.7E-17 91.8 4.7 49 131-182 14-62 (108)
34 2ecj_A Tripartite motif-contai 99.3 2.4E-12 8.2E-17 81.0 4.4 43 130-176 13-58 (58)
35 2egp_A Tripartite motif-contai 99.3 1E-12 3.4E-17 87.8 2.4 49 130-182 10-65 (79)
36 1t1h_A Gspef-atpub14, armadill 99.3 2.4E-12 8.3E-17 85.9 4.3 49 130-182 6-55 (78)
37 2ckl_B Ubiquitin ligase protei 99.3 6.6E-12 2.3E-16 95.5 6.7 76 104-182 22-102 (165)
38 2ecv_A Tripartite motif-contai 99.3 3.9E-12 1.3E-16 85.8 4.8 48 131-182 18-71 (85)
39 2ysj_A Tripartite motif-contai 99.3 4.7E-12 1.6E-16 81.2 4.7 43 130-176 18-63 (63)
40 3ztg_A E3 ubiquitin-protein li 99.2 1.2E-11 4.1E-16 85.1 4.6 49 130-181 11-61 (92)
41 3fl2_A E3 ubiquitin-protein li 99.2 7E-12 2.4E-16 91.1 3.1 48 131-182 51-99 (124)
42 1e4u_A Transcriptional repress 99.2 2.4E-11 8.2E-16 81.7 5.4 53 130-183 9-63 (78)
43 1jm7_A BRCA1, breast cancer ty 99.2 2.1E-11 7.1E-16 86.6 4.7 48 131-182 20-70 (112)
44 1z6u_A NP95-like ring finger p 99.2 1.1E-11 3.7E-16 93.3 3.2 49 131-183 77-126 (150)
45 3hct_A TNF receptor-associated 99.2 9.5E-12 3.3E-16 89.7 2.7 49 130-182 16-65 (118)
46 2vje_A E3 ubiquitin-protein li 99.1 1.9E-11 6.3E-16 79.1 3.3 48 131-181 7-56 (64)
47 1bor_A Transcription factor PM 99.1 1.4E-11 4.8E-16 77.5 2.4 47 130-183 4-50 (56)
48 3knv_A TNF receptor-associated 99.1 3.5E-11 1.2E-15 89.6 3.1 48 130-181 29-77 (141)
49 2y1n_A E3 ubiquitin-protein li 99.1 6.5E-11 2.2E-15 101.3 5.1 48 131-182 331-379 (389)
50 1rmd_A RAG1; V(D)J recombinati 99.1 2.3E-11 7.8E-16 87.3 1.9 48 131-182 22-70 (116)
51 2vje_B MDM4 protein; proto-onc 99.1 5E-11 1.7E-15 76.8 2.9 49 131-181 6-55 (63)
52 3l11_A E3 ubiquitin-protein li 99.1 1.1E-11 3.8E-16 88.8 -0.2 47 131-181 14-61 (115)
53 3k1l_B Fancl; UBC, ring, RWD, 99.1 2.8E-11 9.7E-16 101.5 1.7 53 129-181 305-372 (381)
54 2kr4_A Ubiquitin conjugation f 99.0 2.9E-10 9.9E-15 77.5 3.3 48 131-182 13-60 (85)
55 4ic3_A E3 ubiquitin-protein li 99.0 1.5E-10 5E-15 76.9 1.8 43 131-181 23-66 (74)
56 2kre_A Ubiquitin conjugation f 99.0 3.4E-10 1.2E-14 79.5 3.5 48 131-182 28-75 (100)
57 1jm7_B BARD1, BRCA1-associated 99.0 1.4E-10 4.9E-15 83.3 1.5 47 131-182 21-67 (117)
58 1wgm_A Ubiquitin conjugation f 98.9 4.2E-10 1.4E-14 78.8 3.7 48 131-182 21-69 (98)
59 3hcs_A TNF receptor-associated 98.9 7.3E-10 2.5E-14 84.4 3.1 49 130-182 16-65 (170)
60 1wim_A KIAA0161 protein; ring 98.8 9E-10 3.1E-14 76.1 2.5 48 131-179 4-61 (94)
61 2ea5_A Cell growth regulator w 98.8 2.5E-09 8.5E-14 69.9 4.4 45 130-182 13-58 (68)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.8 3.3E-09 1.1E-13 67.7 4.7 50 130-182 4-59 (60)
63 2ecg_A Baculoviral IAP repeat- 98.8 1.7E-09 5.8E-14 71.7 2.4 44 131-182 24-68 (75)
64 2yho_A E3 ubiquitin-protein li 98.7 3.4E-09 1.2E-13 71.2 1.3 43 131-181 17-60 (79)
65 2yu4_A E3 SUMO-protein ligase 98.7 6E-09 2.1E-13 72.1 2.5 46 131-179 6-59 (94)
66 2c2l_A CHIP, carboxy terminus 98.7 5.7E-09 1.9E-13 84.6 2.7 48 131-182 207-255 (281)
67 2f42_A STIP1 homology and U-bo 98.5 4.4E-08 1.5E-12 75.6 3.0 49 130-182 104-153 (179)
68 3t6p_A Baculoviral IAP repeat- 98.5 3E-08 1E-12 83.9 1.6 43 131-181 294-337 (345)
69 2bay_A PRE-mRNA splicing facto 98.5 5.4E-08 1.8E-12 62.1 2.2 47 133-182 4-50 (61)
70 3htk_C E3 SUMO-protein ligase 98.4 7.5E-08 2.6E-12 78.2 2.6 48 131-181 180-231 (267)
71 3vk6_A E3 ubiquitin-protein li 98.3 3.8E-07 1.3E-11 63.3 4.1 45 134-181 3-48 (101)
72 3nw0_A Non-structural maintena 98.2 9.4E-07 3.2E-11 71.0 4.5 48 131-181 179-228 (238)
73 2lri_C Autoimmune regulator; Z 97.3 0.00021 7.2E-09 46.0 3.7 51 130-184 10-64 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.011 3.7E-07 40.4 3.1 35 131-166 2-36 (101)
75 2ko5_A Ring finger protein Z; 94.6 0.012 4E-07 40.2 1.5 48 130-182 26-73 (99)
76 2l5u_A Chromodomain-helicase-D 93.5 0.04 1.4E-06 34.4 2.2 46 130-179 9-58 (61)
77 1we9_A PHD finger family prote 92.5 0.026 8.9E-07 35.5 0.3 50 130-179 4-58 (64)
78 1mm2_A MI2-beta; PHD, zinc fin 91.7 0.046 1.6E-06 34.2 0.7 47 130-180 7-57 (61)
79 2k16_A Transcription initiatio 91.4 0.042 1.4E-06 35.6 0.3 51 130-181 16-70 (75)
80 2lbm_A Transcriptional regulat 89.7 0.49 1.7E-05 34.6 4.8 46 129-178 60-116 (142)
81 2yt5_A Metal-response element- 89.7 0.061 2.1E-06 33.9 -0.1 51 131-181 5-63 (66)
82 2ku3_A Bromodomain-containing 89.5 0.13 4.5E-06 33.2 1.4 49 130-178 14-65 (71)
83 1f62_A Transcription factor WS 89.5 0.19 6.5E-06 29.9 2.1 44 134-178 2-49 (51)
84 2l43_A N-teminal domain from h 89.4 0.097 3.3E-06 35.2 0.8 49 131-179 24-75 (88)
85 1wep_A PHF8; structural genomi 89.3 0.35 1.2E-05 31.5 3.5 50 130-180 10-64 (79)
86 3v43_A Histone acetyltransfera 88.9 0.11 3.8E-06 36.3 0.8 45 134-178 63-111 (112)
87 2yql_A PHD finger protein 21A; 88.4 0.048 1.6E-06 33.4 -1.2 44 131-178 8-55 (56)
88 2ysm_A Myeloid/lymphoid or mix 88.3 0.14 4.7E-06 35.6 1.0 46 130-176 5-54 (111)
89 1wil_A KIAA1045 protein; ring 87.8 0.5 1.7E-05 31.5 3.4 32 131-166 14-47 (89)
90 1fp0_A KAP-1 corepressor; PHD 87.8 0.24 8.4E-06 33.3 1.9 46 130-179 23-72 (88)
91 3ql9_A Transcriptional regulat 87.5 0.74 2.5E-05 33.1 4.5 45 130-178 55-110 (129)
92 1xwh_A Autoimmune regulator; P 87.3 0.072 2.5E-06 33.7 -0.9 45 131-179 7-55 (66)
93 2jwa_A Receptor tyrosine-prote 87.2 2.3 7.8E-05 24.7 5.6 27 53-80 11-37 (44)
94 3asl_A E3 ubiquitin-protein li 86.8 0.16 5.4E-06 32.6 0.5 45 134-179 20-69 (70)
95 2lv9_A Histone-lysine N-methyl 86.4 0.28 9.5E-06 33.5 1.6 47 130-178 26-75 (98)
96 2vpb_A Hpygo1, pygopus homolog 86.4 0.61 2.1E-05 29.4 3.1 48 131-178 7-65 (65)
97 2klu_A T-cell surface glycopro 86.1 1.7 5.9E-05 27.5 5.0 27 59-85 12-38 (70)
98 2puy_A PHD finger protein 21A; 85.9 0.12 4E-06 32.0 -0.5 44 131-178 4-51 (60)
99 2ri7_A Nucleosome-remodeling f 85.8 0.19 6.6E-06 37.5 0.6 47 131-178 7-58 (174)
100 1wem_A Death associated transc 85.2 0.3 1E-05 31.6 1.2 51 131-183 15-74 (76)
101 2cu8_A Cysteine-rich protein 2 84.7 0.72 2.5E-05 29.2 2.9 40 132-182 9-48 (76)
102 3v43_A Histone acetyltransfera 84.2 1.8 6.1E-05 30.0 5.0 33 132-164 5-42 (112)
103 2co8_A NEDD9 interacting prote 82.3 1.6 5.5E-05 28.1 3.9 41 131-182 14-54 (82)
104 4gne_A Histone-lysine N-methyl 82.2 1.2 4.1E-05 30.9 3.4 44 130-179 13-62 (107)
105 1wev_A Riken cDNA 1110020M19; 82.2 0.18 6.2E-06 33.8 -0.8 47 132-178 16-71 (88)
106 2kgg_A Histone demethylase jar 81.7 0.51 1.7E-05 28.2 1.1 44 134-177 4-52 (52)
107 2cs3_A Protein C14ORF4, MY039 80.2 3.8 0.00013 27.0 5.0 40 130-169 13-52 (93)
108 1wyh_A SLIM 2, skeletal muscle 79.8 2.3 7.8E-05 26.3 3.9 40 133-182 6-45 (72)
109 2kwj_A Zinc finger protein DPF 79.7 1.3 4.3E-05 30.9 2.8 34 133-166 2-41 (114)
110 2e6r_A Jumonji/ARID domain-con 79.6 0.18 6.3E-06 34.1 -1.6 47 131-178 15-65 (92)
111 2dj7_A Actin-binding LIM prote 78.6 1.5 5.1E-05 28.3 2.7 40 131-181 14-53 (80)
112 2l2t_A Receptor tyrosine-prote 78.3 7.5 0.00026 22.5 5.4 24 57-80 13-36 (44)
113 2d8y_A Eplin protein; LIM doma 78.2 1.9 6.6E-05 28.2 3.3 38 133-181 16-53 (91)
114 3shb_A E3 ubiquitin-protein li 77.7 0.3 1E-05 31.9 -0.9 45 134-179 28-77 (77)
115 1iml_A CRIP, cysteine rich int 77.7 1.1 3.7E-05 28.3 1.9 45 131-180 26-71 (76)
116 1wen_A Inhibitor of growth fam 77.5 2.1 7E-05 27.3 3.1 46 131-181 15-67 (71)
117 2e6s_A E3 ubiquitin-protein li 77.4 0.46 1.6E-05 31.0 -0.0 45 134-179 28-77 (77)
118 1x61_A Thyroid receptor intera 77.3 2.7 9.3E-05 26.0 3.7 11 134-144 7-17 (72)
119 1z2q_A LM5-1; membrane protein 77.1 1.9 6.5E-05 28.3 3.0 37 130-166 19-55 (84)
120 2gmg_A Hypothetical protein PF 76.9 0.59 2E-05 32.4 0.4 27 153-184 72-98 (105)
121 1g47_A Pinch protein; LIM doma 76.9 1.9 6.4E-05 27.1 2.8 42 131-182 10-51 (77)
122 1x4k_A Skeletal muscle LIM-pro 76.8 2 6.9E-05 26.6 2.9 40 133-182 6-45 (72)
123 2yw8_A RUN and FYVE domain-con 76.8 1.8 6E-05 28.3 2.7 37 130-166 17-53 (82)
124 1a7i_A QCRP2 (LIM1); LIM domai 76.6 0.74 2.5E-05 29.6 0.8 39 133-182 8-46 (81)
125 2ks1_B Epidermal growth factor 76.3 4.9 0.00017 23.2 4.2 12 69-80 26-37 (44)
126 1wee_A PHD finger family prote 76.1 0.32 1.1E-05 31.1 -1.1 50 131-181 15-68 (72)
127 1weu_A Inhibitor of growth fam 76.0 2 6.9E-05 28.9 2.9 46 131-181 35-87 (91)
128 1x4l_A Skeletal muscle LIM-pro 75.9 3.1 0.00011 25.7 3.7 41 132-182 5-47 (72)
129 1wew_A DNA-binding family prot 75.1 1.2 4.1E-05 28.8 1.5 50 131-182 15-75 (78)
130 1x63_A Skeletal muscle LIM-pro 75.1 3.2 0.00011 26.4 3.7 40 133-182 16-55 (82)
131 2cor_A Pinch protein; LIM doma 74.6 3.2 0.00011 26.5 3.5 39 132-182 15-53 (79)
132 3t7l_A Zinc finger FYVE domain 74.5 1.7 6E-05 28.9 2.3 36 131-166 19-54 (90)
133 3o70_A PHD finger protein 13; 74.1 0.73 2.5E-05 29.2 0.2 47 130-178 17-66 (68)
134 2xb1_A Pygopus homolog 2, B-ce 73.3 1.8 6E-05 29.8 2.1 49 132-180 3-62 (105)
135 1joc_A EEA1, early endosomal a 73.1 1.9 6.4E-05 30.6 2.3 36 131-166 68-103 (125)
136 1nyp_A Pinch protein; LIM doma 73.0 2.3 8E-05 25.9 2.5 38 133-182 6-43 (66)
137 1x4u_A Zinc finger, FYVE domai 72.3 2.5 8.6E-05 27.7 2.6 37 129-165 11-47 (84)
138 1vfy_A Phosphatidylinositol-3- 72.2 2.7 9.1E-05 26.8 2.6 33 133-165 12-44 (73)
139 1zbd_B Rabphilin-3A; G protein 72.2 2.3 7.7E-05 30.7 2.5 35 130-164 53-88 (134)
140 2k1k_A Ephrin type-A receptor 72.1 5.8 0.0002 22.1 3.7 22 55-76 12-33 (38)
141 2d8x_A Protein pinch; LIM doma 72.0 3.6 0.00012 25.3 3.2 37 133-181 6-42 (70)
142 1x68_A FHL5 protein; four-and- 71.6 3.8 0.00013 25.7 3.3 39 133-182 6-47 (76)
143 1wfk_A Zinc finger, FYVE domai 71.5 2.6 8.9E-05 28.0 2.5 35 131-165 8-42 (88)
144 2d8z_A Four and A half LIM dom 70.8 4.3 0.00015 24.9 3.4 37 133-181 6-42 (70)
145 3m62_A Ubiquitin conjugation f 70.6 2.9 9.9E-05 39.5 3.5 48 131-182 890-938 (968)
146 1y02_A CARP2, FYVE-ring finger 68.4 0.7 2.4E-05 32.8 -0.9 46 131-176 18-63 (120)
147 2dar_A PDZ and LIM domain prot 68.4 4.9 0.00017 26.1 3.4 40 131-182 24-63 (90)
148 3kqi_A GRC5, PHD finger protei 67.6 1.8 6.1E-05 27.8 1.0 48 131-179 9-61 (75)
149 3ask_A E3 ubiquitin-protein li 67.0 1.2 4.2E-05 35.0 0.1 45 134-179 176-225 (226)
150 1dvp_A HRS, hepatocyte growth 66.8 2.6 9E-05 32.5 2.1 35 132-166 161-195 (220)
151 2jo1_A Phospholemman; FXYD1, N 66.8 13 0.00044 23.7 4.8 30 56-85 15-44 (72)
152 3f6q_B LIM and senescent cell 66.3 3.8 0.00013 25.1 2.4 42 131-182 10-51 (72)
153 3zyq_A Hepatocyte growth facto 66.1 2.9 9.9E-05 32.6 2.2 36 131-166 163-198 (226)
154 1weo_A Cellulose synthase, cat 65.9 17 0.00059 24.2 5.6 51 131-181 15-69 (93)
155 2ehe_A Four and A half LIM dom 65.7 5.6 0.00019 25.2 3.2 40 133-182 16-55 (82)
156 1v6g_A Actin binding LIM prote 65.7 5 0.00017 25.5 3.0 37 133-181 16-52 (81)
157 2cur_A Skeletal muscle LIM-pro 64.7 6.4 0.00022 24.0 3.3 36 134-181 7-42 (69)
158 3c6w_A P28ING5, inhibitor of g 63.9 2 6.9E-05 26.3 0.7 43 131-178 8-57 (59)
159 1x6a_A LIMK-2, LIM domain kina 63.6 5.1 0.00017 25.4 2.7 36 134-181 17-52 (81)
160 2egq_A FHL1 protein; LIM domai 63.3 6.1 0.00021 24.7 3.0 39 133-182 16-58 (77)
161 1x64_A Alpha-actinin-2 associa 63.1 7.2 0.00025 25.2 3.4 39 132-182 25-63 (89)
162 3mpx_A FYVE, rhogef and PH dom 62.9 1.5 5.3E-05 36.9 0.0 50 131-180 374-430 (434)
163 2ysm_A Myeloid/lymphoid or mix 62.1 1.1 3.9E-05 30.8 -0.8 45 134-179 56-104 (111)
164 2vnf_A ING 4, P29ING4, inhibit 61.7 2.2 7.4E-05 26.2 0.5 43 131-178 9-58 (60)
165 2jp3_A FXYD domain-containing 61.6 8.9 0.0003 24.1 3.4 30 56-85 16-45 (67)
166 1zfo_A LAsp-1; LIM domain, zin 61.3 2.7 9.1E-05 22.2 0.8 27 134-163 5-31 (31)
167 2l3k_A Rhombotin-2, linker, LI 60.9 5.4 0.00018 27.7 2.6 11 134-144 10-20 (123)
168 2rsd_A E3 SUMO-protein ligase 60.2 1 3.4E-05 28.4 -1.3 47 131-178 9-64 (68)
169 2l4z_A DNA endonuclease RBBP8, 60.2 3.9 0.00013 28.6 1.7 39 132-181 61-99 (123)
170 4fo9_A E3 SUMO-protein ligase 59.7 5.3 0.00018 33.5 2.7 47 133-182 216-266 (360)
171 3kv5_D JMJC domain-containing 59.7 2.2 7.7E-05 37.2 0.5 47 131-178 36-87 (488)
172 2dlo_A Thyroid receptor-intera 59.4 7.4 0.00025 24.6 2.9 37 133-181 16-52 (81)
173 2g6q_A Inhibitor of growth pro 58.5 2.9 0.0001 25.8 0.7 45 131-178 10-59 (62)
174 3mjh_B Early endosome antigen 58.3 1.1 3.9E-05 24.5 -1.1 18 131-148 4-21 (34)
175 2cup_A Skeletal muscle LIM-pro 58.1 9.8 0.00034 25.0 3.5 46 131-181 32-77 (101)
176 3i2d_A E3 SUMO-protein ligase 57.9 10 0.00035 31.9 4.2 46 133-181 250-299 (371)
177 1x62_A C-terminal LIM domain p 57.6 6.2 0.00021 24.9 2.3 37 132-180 15-51 (79)
178 2xqn_T Testin, TESS; metal-bin 55.2 8.4 0.00029 26.5 2.8 47 131-182 29-75 (126)
179 1wig_A KIAA1808 protein; LIM d 55.0 10 0.00035 23.6 3.0 36 134-181 7-42 (73)
180 1m3v_A FLIN4, fusion of the LI 54.4 10 0.00034 26.2 3.1 49 132-182 32-81 (122)
181 1x3h_A Leupaxin; paxillin fami 53.6 10 0.00036 23.7 2.9 37 134-182 17-53 (80)
182 3a1b_A DNA (cytosine-5)-methyl 53.3 12 0.00041 27.7 3.4 43 131-177 78-132 (159)
183 2pv0_B DNA (cytosine-5)-methyl 53.2 14 0.00048 31.2 4.3 44 131-178 92-147 (386)
184 1z60_A TFIIH basal transcripti 52.9 8.7 0.0003 23.6 2.2 42 133-176 16-58 (59)
185 2iyb_E Testin, TESS, TES; LIM 52.7 8.6 0.0003 23.2 2.3 38 134-182 4-44 (65)
186 1j2o_A FLIN2, fusion of rhombo 52.6 9.7 0.00033 25.9 2.8 36 131-168 29-65 (114)
187 2kwj_A Zinc finger protein DPF 52.5 1.5 5.3E-05 30.4 -1.5 45 134-179 60-108 (114)
188 1b8t_A Protein (CRP1); LIM dom 50.1 9 0.00031 28.6 2.4 38 133-181 116-153 (192)
189 2csz_A Synaptotagmin-like prot 49.5 11 0.00039 24.3 2.5 34 129-162 22-56 (76)
190 2zet_C Melanophilin; complex, 49.4 9.2 0.00031 28.1 2.3 46 131-177 67-115 (153)
191 2zxe_G FXYD10, phospholemman-l 48.3 10 0.00036 24.3 2.1 30 56-85 18-47 (74)
192 2l2t_A Receptor tyrosine-prote 47.8 38 0.0013 19.4 4.9 30 56-85 9-38 (44)
193 2d8v_A Zinc finger FYVE domain 47.4 12 0.00042 23.5 2.3 33 130-167 6-39 (67)
194 2cuq_A Four and A half LIM dom 47.0 16 0.00055 22.8 3.0 37 133-181 16-52 (80)
195 2jmi_A Protein YNG1, ING1 homo 46.7 5.4 0.00018 26.7 0.6 46 130-178 24-75 (90)
196 2o35_A Hypothetical protein DU 45.7 8.6 0.0003 26.2 1.5 11 158-168 43-53 (105)
197 3fyb_A Protein of unknown func 45.7 8.7 0.0003 26.2 1.5 11 158-168 42-52 (104)
198 1iij_A ERBB-2 receptor protein 45.5 12 0.00041 20.5 1.8 22 58-80 12-33 (35)
199 2rgt_A Fusion of LIM/homeobox 45.1 16 0.00054 26.6 3.1 38 134-181 67-104 (169)
200 2knc_A Integrin alpha-IIB; tra 43.6 51 0.0018 19.7 5.9 12 58-69 14-25 (54)
201 2k9j_B Integrin beta-3; transm 43.4 44 0.0015 18.9 4.2 9 57-65 10-18 (43)
202 1rut_X Flinc4, fusion protein 42.1 14 0.00047 27.5 2.4 38 134-181 71-108 (188)
203 2jtn_A LIM domain-binding prot 42.1 18 0.00062 26.6 3.0 44 132-181 87-130 (182)
204 2jny_A Uncharacterized BCR; st 39.4 5.2 0.00018 25.2 -0.4 18 164-181 4-21 (67)
205 2jvx_A NF-kappa-B essential mo 37.5 6 0.0002 20.6 -0.3 10 171-180 4-13 (28)
206 3j1r_A Archaeal adhesion filam 37.2 42 0.0014 16.9 4.1 16 54-69 2-17 (26)
207 2jmo_A Parkin; IBR, E3 ligase, 35.9 3.1 0.0001 27.0 -2.0 19 153-173 55-73 (80)
208 1wd2_A Ariadne-1 protein homol 35.2 5.1 0.00018 24.6 -0.9 36 133-168 7-46 (60)
209 3o7a_A PHD finger protein 13 v 35.0 6.8 0.00023 23.0 -0.3 41 137-178 8-51 (52)
210 1m3v_A FLIN4, fusion of the LI 34.3 34 0.0011 23.4 3.2 39 132-181 5-43 (122)
211 2kog_A Vesicle-associated memb 33.4 57 0.002 22.6 4.3 11 53-63 92-102 (119)
212 2l9u_A Receptor tyrosine-prote 31.7 66 0.0022 17.5 3.8 26 55-80 6-32 (40)
213 2jne_A Hypothetical protein YF 30.2 15 0.00052 24.9 0.7 40 133-181 33-72 (101)
214 2das_A Zinc finger MYM-type pr 29.4 60 0.002 19.9 3.3 36 131-166 19-55 (62)
215 2xjy_A Rhombotin-2; oncoprotei 29.3 30 0.001 23.7 2.2 37 134-180 68-104 (131)
216 2k21_A Potassium voltage-gated 27.3 63 0.0021 23.0 3.5 27 57-83 54-80 (138)
217 2ct7_A Ring finger protein 31; 27.3 6.2 0.00021 25.8 -1.6 18 149-166 44-61 (86)
218 2jrp_A Putative cytoplasmic pr 26.6 30 0.001 22.5 1.7 11 134-144 4-14 (81)
219 2kpi_A Uncharacterized protein 26.5 24 0.00083 21.2 1.1 29 131-159 9-39 (56)
220 1afo_A Glycophorin A; integral 26.0 92 0.0031 17.3 5.3 26 55-80 11-36 (40)
221 2fiy_A Protein FDHE homolog; F 22.2 5.8 0.0002 32.5 -3.1 47 131-178 181-230 (309)
222 2jyp_A Aragonite protein AP7; 21.8 34 0.0012 18.1 1.0 19 131-149 8-26 (36)
223 3pwf_A Rubrerythrin; non heme 21.0 52 0.0018 24.2 2.3 22 150-178 140-161 (170)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=126.15 Aligned_cols=80 Identities=28% Similarity=0.672 Sum_probs=69.0
Q ss_pred cccccCCCCHHHHhhCCceeecccccccCCCCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCC
Q 045417 100 RRGAARGLDREVIDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN 179 (184)
Q Consensus 100 ~~~~~~gl~~~~i~~~p~~~~~~~~~~~~~~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~ 179 (184)
......+++++.++.+|.+.+..... ...++.+|+||+++|..++.++.++ |||.||..||+.|++.+.+||+||+.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHG--AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCS--SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCcCCCCCCHHHHHhCCCeeeccccc--ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 34467899999999999998875432 2346678999999999999999998 99999999999999999999999999
Q ss_pred CCC
Q 045417 180 LAS 182 (184)
Q Consensus 180 l~~ 182 (184)
+.+
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.3e-19 Score=117.49 Aligned_cols=68 Identities=32% Similarity=0.914 Sum_probs=57.6
Q ss_pred HhhCCceeecccccccCCCCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCCC
Q 045417 112 IDTFPTFVYSDVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183 (184)
Q Consensus 112 i~~~p~~~~~~~~~~~~~~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 183 (184)
++.+|.+.+...+ ...++.+|+||+++|..++.++.++ |+|.||.+||+.|++.+.+||+||+++.+.
T Consensus 6 i~~lp~~~~~~~~---~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNN---HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSS---CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcc---ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4567887776533 2346679999999999999999998 999999999999999999999999998764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.70 E-value=7.3e-18 Score=105.80 Aligned_cols=51 Identities=55% Similarity=1.249 Sum_probs=47.0
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
++.+|+||+++|.+++....++.|||.||.+||+.|++++.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 566999999999999988888779999999999999999999999999875
No 4
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-17 Score=111.34 Aligned_cols=52 Identities=25% Similarity=0.790 Sum_probs=43.2
Q ss_pred CCcccCccccccCC-----------CCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFED-----------DETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~-----------~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
++.+|+||+++|++ ++.++.++.|+|.||.+||++|++++.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45578888888854 45566666799999999999999999999999998864
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=5.6e-17 Score=106.39 Aligned_cols=54 Identities=35% Similarity=1.002 Sum_probs=48.2
Q ss_pred CCCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCCC
Q 045417 129 GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183 (184)
Q Consensus 129 ~~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 183 (184)
..+..+|+||++.|..++.++.++ |||.||..||..|++.+.+||+||+.+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 346678999999999888888887 999999999999999999999999988653
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=108.04 Aligned_cols=52 Identities=37% Similarity=0.914 Sum_probs=47.6
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..+.+|+||+++|.+++.++.++ |+|.||.+||+.|++.+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 45679999999999999898888 99999999999999999999999998864
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=8.2e-17 Score=108.05 Aligned_cols=53 Identities=45% Similarity=1.131 Sum_probs=48.0
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 183 (184)
.+..+|+||+++|.+++.++.++ |+|.||.+||..|++.+.+||+||+.+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 45679999999999998888887 999999999999999999999999988653
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.60 E-value=3.4e-16 Score=111.64 Aligned_cols=65 Identities=26% Similarity=0.499 Sum_probs=49.8
Q ss_pred CceeecccccccCCCCCcccCccccccCCCC---------------ceeecCCCCCcccHHHHHHHHhcCCCCccccCCC
Q 045417 116 PTFVYSDVKTLKVGKGALECAVCLNEFEDDE---------------TLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 180 (184)
Q Consensus 116 p~~~~~~~~~~~~~~~~~eCaICL~~f~~~~---------------~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l 180 (184)
....+..+.....+.++..|+||+++|++.- .++.++ |+|.||.+||+.||+.+.+||+||+++
T Consensus 21 ~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 21 EVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp EEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 3344444444444556789999999998641 355666 999999999999999999999999986
Q ss_pred C
Q 045417 181 A 181 (184)
Q Consensus 181 ~ 181 (184)
.
T Consensus 100 ~ 100 (106)
T 3dpl_R 100 E 100 (106)
T ss_dssp C
T ss_pred e
Confidence 4
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.59 E-value=7.6e-16 Score=96.39 Aligned_cols=50 Identities=26% Similarity=0.828 Sum_probs=43.3
Q ss_pred CCcccCccccccCCCC-ceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDE-TLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~-~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
+..+|+||++++.+++ ....++ |+|.||.+||+.|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 5668999999997654 466666 9999999999999998899999999875
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=99.68 Aligned_cols=52 Identities=27% Similarity=0.813 Sum_probs=44.2
Q ss_pred CCCcccCccccccCCC----CceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
.+..+|+||++.|.+. ..+.+++ |||.||.+||+.|++++.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4667999999999764 3345666 99999999999999999999999999875
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.56 E-value=1.1e-15 Score=100.52 Aligned_cols=53 Identities=26% Similarity=0.805 Sum_probs=44.7
Q ss_pred CCCcccCccccccCCC----CceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCCC
Q 045417 130 KGALECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 183 (184)
.++.+|+||++++.+. +....++ |||.||.+||+.|++++.+||+||+.+..+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3567999999999753 4456666 999999999999999999999999988753
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.56 E-value=2.6e-15 Score=107.66 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=41.2
Q ss_pred CCcccCccccccCCCC---------------ceeecCCCCCcccHHHHHHHH-----hcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDE---------------TLRLIPKCDHVFHPECIDAWL-----ESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~---------------~~r~lp~C~H~FH~~CI~~Wl-----~~~~~CP~CR~~l~~ 182 (184)
.+.+|+||+++|.+++ .+++++ |+|.||.+||+.|+ ..+.+||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3458999999997653 334665 99999999999999 456799999998753
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.54 E-value=2e-15 Score=97.07 Aligned_cols=52 Identities=25% Similarity=0.772 Sum_probs=43.9
Q ss_pred CCcccCccccccCCC----CceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCCC
Q 045417 131 GALECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183 (184)
Q Consensus 131 ~~~eCaICL~~f~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 183 (184)
++.+|+||++++.+. +.+..++ |||.||.+||+.|++++.+||+||+.+..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999999753 3445666 999999999999999999999999998753
No 14
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.53 E-value=4.3e-16 Score=112.83 Aligned_cols=68 Identities=26% Similarity=0.496 Sum_probs=9.3
Q ss_pred CCceeecccccccCCCCCcccCccccccCCC-------------C-ceeecCCCCCcccHHHHHHHHhcCCCCccccCCC
Q 045417 115 FPTFVYSDVKTLKVGKGALECAVCLNEFEDD-------------E-TLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 180 (184)
Q Consensus 115 ~p~~~~~~~~~~~~~~~~~eCaICL~~f~~~-------------~-~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l 180 (184)
+....++.+.....+.++..|+||+++|++. + ...+++.|+|.||.+||+.||+.+.+||+||+++
T Consensus 31 ~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 31 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp EEEEEEEEEEEEEECCCC--------------------------------------------------------------
T ss_pred eEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 3344455555445555678999999999752 2 2223234999999999999999999999999986
Q ss_pred CC
Q 045417 181 AS 182 (184)
Q Consensus 181 ~~ 182 (184)
..
T Consensus 111 ~~ 112 (117)
T 4a0k_B 111 EF 112 (117)
T ss_dssp --
T ss_pred ee
Confidence 43
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.1e-15 Score=99.37 Aligned_cols=51 Identities=27% Similarity=0.799 Sum_probs=43.1
Q ss_pred CCCcccCccccccCCCCceeecCCCC-----CcccHHHHHHHHhcC--CCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCD-----HVFHPECIDAWLESH--TTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~-----H~FH~~CI~~Wl~~~--~~CP~CR~~l~~ 182 (184)
.++.+|.||+++|++++.+ ++| |+ |.||.+||+.|+..+ .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4567899999999888776 467 86 999999999999754 589999998764
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.3e-15 Score=97.09 Aligned_cols=48 Identities=35% Similarity=1.032 Sum_probs=42.2
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
.+..+|+||++.+.+ ..++ |||.||..||..|+.++.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 456799999999886 4566 99999999999999999999999998764
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.3e-14 Score=94.76 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=42.4
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
.+..+|+||++.+.+. +.+++ |||.||..||..|++.+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 4567999999999863 33345 99999999999999989999999998864
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.48 E-value=1.8e-14 Score=93.92 Aligned_cols=48 Identities=31% Similarity=0.816 Sum_probs=41.7
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
.+.+|+||++.+.++ ...++ |||.||.+||..|++++.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 566899999998753 45666 9999999999999999999999999875
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.4e-14 Score=94.39 Aligned_cols=48 Identities=29% Similarity=0.638 Sum_probs=41.3
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
.+..+|+||++.+.+. ..++ |||.||..||..|+..+.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3567899999998764 3446 9999999999999999999999999875
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.1e-14 Score=95.63 Aligned_cols=52 Identities=27% Similarity=0.786 Sum_probs=44.0
Q ss_pred CCCcccCccccccCCCCc-eeecCCCCCcccHHHHHHHHhcC---CCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDET-LRLIPKCDHVFHPECIDAWLESH---TTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~-~r~lp~C~H~FH~~CI~~Wl~~~---~~CP~CR~~l~~ 182 (184)
.+..+|+||++.|.+++. .+.++ |||.||.+||..|++.+ .+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 466799999999998764 56666 99999999999999875 789999997653
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.6e-13 Score=91.50 Aligned_cols=48 Identities=19% Similarity=0.598 Sum_probs=41.2
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
....+|+||++.|.+. + +++ |||.||..||..|++.+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p--~-~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP--V-VTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE--E-ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe--e-Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3567899999999763 2 455 9999999999999998999999999874
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.1e-13 Score=87.64 Aligned_cols=50 Identities=22% Similarity=0.599 Sum_probs=41.8
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHH-hcCCCCccccCCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLASE 183 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl-~~~~~CP~CR~~l~~~ 183 (184)
.+..+|+||++.+.+... ++ |||.||..||..|+ ..+.+||+||+.+..+
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 356799999999987544 35 99999999999999 4567899999998753
No 23
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.40 E-value=1.1e-13 Score=100.86 Aligned_cols=53 Identities=26% Similarity=0.805 Sum_probs=44.9
Q ss_pred CCCcccCccccccCCC----CceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCCC
Q 045417 130 KGALECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 183 (184)
.+..+|+||++.|.++ +....++ |||.||.+||+.|++++.+||+||+.+..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567999999999764 4446666 999999999999999999999999988754
No 24
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=90.72 Aligned_cols=49 Identities=18% Similarity=0.578 Sum_probs=42.5
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcC--CCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH--TTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~~ 182 (184)
...+|+||.+.+..++... .|+|.||.+||+.||+++ .+||+||+++..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 5569999999999877654 599999999999999887 889999998753
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=89.64 Aligned_cols=50 Identities=26% Similarity=0.692 Sum_probs=41.2
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh---cCCCCccccCCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE---SHTTCPVCRSNLASE 183 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~---~~~~CP~CR~~l~~~ 183 (184)
.+..+|+||++.+.+. ..++ |||.||.+||..|++ .+.+||+||+.+..+
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3567999999998853 3345 999999999999996 456899999998764
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.38 E-value=1.2e-13 Score=102.38 Aligned_cols=48 Identities=31% Similarity=0.925 Sum_probs=41.4
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
++..|+||++.|.++ .++| |||.||..||..|+..+.+||+||+++..
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 345799999999763 3456 99999999999999999999999998864
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=5.2e-13 Score=86.32 Aligned_cols=51 Identities=20% Similarity=0.542 Sum_probs=40.6
Q ss_pred CCcccCcccc-ccCCCCcee-ecCCCCCcccHHHHHHHHhc-CCCCccccCCCCC
Q 045417 131 GALECAVCLN-EFEDDETLR-LIPKCDHVFHPECIDAWLES-HTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~-~f~~~~~~r-~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 182 (184)
++.+|+||++ .+.+..... .++ |||.||..||+.|+.+ +.+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3568999999 777765433 344 9999999999999754 4679999998864
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=4.6e-13 Score=88.96 Aligned_cols=49 Identities=33% Similarity=0.689 Sum_probs=40.3
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcC--CCCccccCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH--TTCPVCRSNLA 181 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~ 181 (184)
.+..+|+||++.|.+... ++.|||.||..||..|++.+ .+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVV---IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTCEE---CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCCeE---cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 356799999999986433 44599999999999999765 68999999754
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.34 E-value=3.3e-13 Score=98.27 Aligned_cols=53 Identities=28% Similarity=0.839 Sum_probs=44.2
Q ss_pred CCCCcccCccccccCCC----CceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 129 GKGALECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 129 ~~~~~eCaICL~~f~~~----~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..+..+|+||++.|++. .....++ |||.||..||++|++.+.+||+||+++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 34677999999999753 3335555 99999999999999999999999998865
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=1.1e-12 Score=88.56 Aligned_cols=48 Identities=31% Similarity=0.718 Sum_probs=41.1
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc------CCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES------HTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~l~~ 182 (184)
+..+|+||++.+.+.. +++ |||.||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 5679999999998653 456 9999999999999977 6789999998864
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.32 E-value=5.1e-13 Score=93.84 Aligned_cols=49 Identities=27% Similarity=0.729 Sum_probs=40.8
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcC-CCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~ 182 (184)
+..+|+||++.|.+ .+..++ |||.||..||..|++.+ .+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 45689999999985 343355 99999999999999877 699999998753
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.31 E-value=9.3e-13 Score=92.04 Aligned_cols=49 Identities=27% Similarity=0.720 Sum_probs=41.2
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
+..+|+||++.|.+. +.+++ |||.||..||..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 456899999999863 33335 99999999999999998999999998763
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.29 E-value=2e-12 Score=91.83 Aligned_cols=49 Identities=33% Similarity=0.729 Sum_probs=42.1
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
+...|+||++.|.+ .+.+++ |||.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 56799999999975 344445 99999999999999999999999998864
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=80.97 Aligned_cols=43 Identities=37% Similarity=0.938 Sum_probs=35.6
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHH---hcCCCCccc
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL---ESHTTCPVC 176 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl---~~~~~CP~C 176 (184)
.+..+|+||++.+.+.. +++ |||.||.+||..|+ ..+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPV---IIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCC---CCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccE---eCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35679999999998753 345 99999999999995 456789998
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.28 E-value=1e-12 Score=87.85 Aligned_cols=49 Identities=22% Similarity=0.658 Sum_probs=41.2
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc-------CCCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-------HTTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~-------~~~CP~CR~~l~~ 182 (184)
.+..+|+||++.|.+... ++ |||.||..||..|++. ..+||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~---l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLS---LD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCC---CS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeE---CC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 366799999999987433 45 9999999999999976 6689999998864
No 36
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.28 E-value=2.4e-12 Score=85.94 Aligned_cols=49 Identities=22% Similarity=0.639 Sum_probs=41.3
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 182 (184)
.+...|+||++.|.+. + .++ |||.||..||..|+.. +.+||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~P--v-~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP--V-IVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSE--E-EET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCC--E-EcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3567999999999864 3 235 9999999999999986 7889999998764
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.27 E-value=6.6e-12 Score=95.50 Aligned_cols=76 Identities=28% Similarity=0.529 Sum_probs=52.0
Q ss_pred cCCCCHHHHhhCCceeecccccc----cCCCCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCccccC
Q 045417 104 ARGLDREVIDTFPTFVYSDVKTL----KVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRS 178 (184)
Q Consensus 104 ~~gl~~~~i~~~p~~~~~~~~~~----~~~~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~ 178 (184)
..++....+...+.....+.... +...+...|+||++.|.+ .+.+++ |||.||..||+.|+.. +.+||+||.
T Consensus 22 ~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~ 98 (165)
T 2ckl_B 22 TWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRK 98 (165)
T ss_dssp CCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCC
T ss_pred cccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCC
Confidence 45556666665554333322111 112245689999999986 344445 9999999999999987 788999999
Q ss_pred CCCC
Q 045417 179 NLAS 182 (184)
Q Consensus 179 ~l~~ 182 (184)
.+..
T Consensus 99 ~~~~ 102 (165)
T 2ckl_B 99 KLVS 102 (165)
T ss_dssp BCCS
T ss_pred cCCC
Confidence 8853
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.9e-12 Score=85.76 Aligned_cols=48 Identities=27% Similarity=0.727 Sum_probs=40.8
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc------CCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES------HTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~------~~~CP~CR~~l~~ 182 (184)
+..+|+||++.+.+.. .++ |||.||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPL---SLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCB---CCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCce---eCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 5679999999998643 345 9999999999999977 7889999998764
No 39
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.7e-12 Score=81.17 Aligned_cols=43 Identities=30% Similarity=0.749 Sum_probs=35.8
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh---cCCCCccc
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE---SHTTCPVC 176 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~---~~~~CP~C 176 (184)
.+..+|+||++.+.+.. .++ |||.||..||..|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPV---TID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCE---ECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeE---EeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46679999999998642 345 999999999999997 45689998
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=85.09 Aligned_cols=49 Identities=33% Similarity=0.701 Sum_probs=40.0
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcC--CCCccccCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH--TTCPVCRSNLA 181 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~ 181 (184)
.+...|+||++.|.+.. .++.|||.||..||..|+..+ .+||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 36679999999998653 334499999999999999643 58999999873
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.19 E-value=7e-12 Score=91.06 Aligned_cols=48 Identities=23% Similarity=0.621 Sum_probs=39.9
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCC-CCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT-TCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~ 182 (184)
+...|+||++.|.+.. .++ |||.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPI---TTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEE---ECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcE---Eee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4568999999998642 345 999999999999997554 89999998865
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.18 E-value=2.4e-11 Score=81.73 Aligned_cols=53 Identities=21% Similarity=0.500 Sum_probs=41.3
Q ss_pred CCCcccCccccccCCCCcee-ecCCCCCcccHHHHHHHHh-cCCCCccccCCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLR-LIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLASE 183 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r-~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~~~ 183 (184)
.++.+|+||++.+...+... -++ |||.||..|+..|+. .+..||+||+.+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 46679999999997544332 233 999999999999984 456899999988754
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=2.1e-11 Score=86.62 Aligned_cols=48 Identities=29% Similarity=0.831 Sum_probs=39.8
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCC---CCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT---TCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~---~CP~CR~~l~~ 182 (184)
+..+|+||++.+.+... ++ |||.||..||..|+..+. +||+||..+..
T Consensus 20 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 35589999999986533 45 999999999999998654 89999998764
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=93.32 Aligned_cols=49 Identities=22% Similarity=0.611 Sum_probs=40.8
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCC-CCccccCCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT-TCPVCRSNLASE 183 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~~ 183 (184)
+...|+||++.|.+... ++ |||.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT---TE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEE---cC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999986433 45 999999999999998654 899999998754
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.16 E-value=9.5e-12 Score=89.71 Aligned_cols=49 Identities=29% Similarity=0.651 Sum_probs=40.8
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCC-CCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT-TCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~ 182 (184)
.+..+|+||++.+.+. + .++ |||.||..||..|++.+. +||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p--~-~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREA--V-QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCe--E-ECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3567999999999865 2 345 999999999999997665 99999998764
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.15 E-value=1.9e-11 Score=79.11 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=39.8
Q ss_pred CCcccCccccccCCCCcee-ecCCCCCc-ccHHHHHHHHhcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLR-LIPKCDHV-FHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r-~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
++.+|.||++.+.+. +. .+| |||. |+.+|++.|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999987653 22 237 9999 899999999998899999999875
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=1.4e-11 Score=77.51 Aligned_cols=47 Identities=28% Similarity=0.659 Sum_probs=39.2
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 183 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 183 (184)
.+...|+||++.|.+. ++++ |||.||..||..| ..+||+||+.+..+
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4667899999999875 4456 9999999999885 66899999988754
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.09 E-value=3.5e-11 Score=89.61 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=40.2
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCC-CCccccCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT-TCPVCRSNLA 181 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~-~CP~CR~~l~ 181 (184)
.+...|+||++.+.++ +. ++ |||.||..||..|++... +||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~p--v~-~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP--FQ-AQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE--EE-CT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc--EE-CC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4677999999999876 32 45 999999999999998665 8999999764
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.09 E-value=6.5e-11 Score=101.27 Aligned_cols=48 Identities=27% Similarity=0.837 Sum_probs=40.7
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh-cCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~~ 182 (184)
...+|+||++.+.+ ...+| |||.||..|+..|+. .+.+||+||+.+..
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 45699999999865 34556 999999999999998 68899999998753
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.09 E-value=2.3e-11 Score=87.26 Aligned_cols=48 Identities=27% Similarity=0.630 Sum_probs=39.9
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 182 (184)
+...|+||++.+.+... ++ |||.||..||..|+.. +.+||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVE---TS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEE---cC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 34589999999986432 45 9999999999999986 7789999998763
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.07 E-value=5e-11 Score=76.80 Aligned_cols=49 Identities=16% Similarity=0.423 Sum_probs=39.7
Q ss_pred CCcccCccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
...+|.||++...+.. +..+| |||. |+.+|+..|.+.+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4568999999866432 22346 9998 999999999988889999999875
No 52
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.07 E-value=1.1e-11 Score=88.78 Aligned_cols=47 Identities=23% Similarity=0.778 Sum_probs=39.3
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~ 181 (184)
++.+|+||++.|.+.. .++ |||.||..||..|+.. +.+||+||..+.
T Consensus 14 ~~~~C~iC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPV---TLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCE---ECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCcee---EcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4568999999998643 335 9999999999999966 678999999874
No 53
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.06 E-value=2.8e-11 Score=101.49 Aligned_cols=53 Identities=25% Similarity=0.671 Sum_probs=41.2
Q ss_pred CCCCcccCccccccCCCCcee----ecCCCCCcccHHHHHHHHhcC-----------CCCccccCCCC
Q 045417 129 GKGALECAVCLNEFEDDETLR----LIPKCDHVFHPECIDAWLESH-----------TTCPVCRSNLA 181 (184)
Q Consensus 129 ~~~~~eCaICL~~f~~~~~~r----~lp~C~H~FH~~CI~~Wl~~~-----------~~CP~CR~~l~ 181 (184)
.++..+|+||++.+.++..+- ..++|+|.||..|+.+||++. .+||+||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 356789999999998743331 223699999999999999642 46999999875
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.96 E-value=2.9e-10 Score=77.50 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=41.6
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
+...|+||++-|.+... ++ |||.|+..||..|+.++.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~dPV~---~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVR---LP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeE---CC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 56789999999997533 35 99999999999999988999999998753
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.96 E-value=1.5e-10 Score=76.86 Aligned_cols=43 Identities=23% Similarity=0.746 Sum_probs=36.2
Q ss_pred CCcccCccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
++.+|+||++.+.+ ...+| |||. ||..|+..| ..||+||+.+.
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 34589999998775 34556 9999 999999999 78999999875
No 56
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.95 E-value=3.4e-10 Score=79.50 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=41.9
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
+...|+||++-|.++.. ++ |||.|+..||..|+.++.+||+||..+..
T Consensus 28 ~~~~CpI~~~~m~dPV~---~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVR---LP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSEEE---ET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCCeE---CC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 56789999999997543 35 99999999999999988999999998764
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=1.4e-10 Score=83.35 Aligned_cols=47 Identities=30% Similarity=0.706 Sum_probs=38.7
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
+...|+||++.|.+. +.+.+ |||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCc--cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 456899999999864 32225 999999999999987 789999998753
No 58
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.94 E-value=4.2e-10 Score=78.76 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=41.6
Q ss_pred CCcccCccccccCCCCceeecCCCC-CcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCD-HVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~-H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
+...|+||++-|.++.. ++ || |.|+..||..|+..+.+||+||..+..
T Consensus 21 ~~~~CpI~~~~m~dPV~---~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVV---LP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEE---CT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeE---CC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 56789999999997543 35 99 999999999999988999999998764
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.88 E-value=7.3e-10 Score=84.43 Aligned_cols=49 Identities=29% Similarity=0.656 Sum_probs=40.8
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcC-CCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~ 182 (184)
.+...|+||++.+.++ + .++ |||.||..||..|++.. .+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p--v-~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREA--V-QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCc--E-ECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3677999999999875 3 345 99999999999999764 499999998764
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=9e-10 Score=76.11 Aligned_cols=48 Identities=25% Similarity=0.763 Sum_probs=40.4
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc--------CCCCcc--ccCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES--------HTTCPV--CRSN 179 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~--------~~~CP~--CR~~ 179 (184)
+..+|+||++++..++.+.+.+ |||.||.+|+..++.. ..+||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5668999999998877777666 9999999999999853 247999 9987
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2.5e-09 Score=69.86 Aligned_cols=45 Identities=29% Similarity=0.785 Sum_probs=36.8
Q ss_pred CCCcccCccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
.+..+|.||++...+ +.++| |||. |+..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 356789999998654 55677 9999 99999984 4789999998864
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.84 E-value=3.3e-09 Score=67.68 Aligned_cols=50 Identities=22% Similarity=0.630 Sum_probs=37.6
Q ss_pred CCCcccCccccccCCCCceeecC-CCCC---cccHHHHHHHHh--cCCCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIP-KCDH---VFHPECIDAWLE--SHTTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp-~C~H---~FH~~CI~~Wl~--~~~~CP~CR~~l~~ 182 (184)
++...|.||+++. ++.+ ++| .|.| .||.+|++.|+. .+.+||+||..+..
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3566899999983 3344 466 3445 899999999995 36789999998753
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.7e-09 Score=71.74 Aligned_cols=44 Identities=23% Similarity=0.712 Sum_probs=35.2
Q ss_pred CCcccCccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
+..+|+||++.+.+ ..++| |||. ||..|+.. ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 34589999999765 33456 9999 99999964 3789999998764
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.69 E-value=3.4e-09 Score=71.20 Aligned_cols=43 Identities=35% Similarity=0.785 Sum_probs=35.4
Q ss_pred CCcccCccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
+..+|.||++.+.+ ...+| |||. |+..|+..| ..||+||..+.
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 34589999998764 45567 9999 999999987 48999999875
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=6e-09 Score=72.11 Aligned_cols=46 Identities=22% Similarity=0.608 Sum_probs=37.4
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcC------CCCcc--ccCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH------TTCPV--CRSN 179 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~------~~CP~--CR~~ 179 (184)
....|+||++.|.++ +.. +.|||.|+..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP--V~~-~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP--VKN-KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE--EEE-SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC--EEc-CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 567899999999964 333 3499999999999999754 48999 9865
No 66
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=5.7e-09 Score=84.55 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=40.0
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc-CCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 182 (184)
+...|+||++-|.++.. ++ |||.|+..||..|+.. +.+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~---~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCI---TP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEE---CS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeE---CC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 56789999999997543 35 9999999999999975 4459999998863
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.51 E-value=4.4e-08 Score=75.58 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=40.2
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcC-CCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~ 182 (184)
.+...|+||++-|.++.. ++ |||.|+..||..|+..+ .+||+||..+..
T Consensus 104 p~~f~CPI~~elm~DPV~---~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCI---TP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeE---CC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 366789999999997433 35 99999999999999764 479999998753
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.48 E-value=3e-08 Score=83.87 Aligned_cols=43 Identities=30% Similarity=0.833 Sum_probs=36.4
Q ss_pred CCcccCccccccCCCCceeecCCCCCc-ccHHHHHHHHhcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45689999999875 34456 9999 999999998 78999999875
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.47 E-value=5.4e-08 Score=62.13 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=39.7
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..|+||++.+++. +. ++.+||+|...||.+|++++.+||+.+..+..
T Consensus 4 ~~CpIs~~~m~dP--V~-~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRP--VL-SPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSE--EE-ETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCC--EE-eCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 5799999999964 33 32499999999999999888899999998753
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.42 E-value=7.5e-08 Score=78.15 Aligned_cols=48 Identities=29% Similarity=0.647 Sum_probs=39.0
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcC--CCCcc--ccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH--TTCPV--CRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~--~~CP~--CR~~l~ 181 (184)
....|+||++.|.++ |+.. .|||.|+..||..|+..+ .+||+ ||+.+.
T Consensus 180 ~el~CPIcl~~f~DP--Vts~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISR-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEES-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCC--eeeC-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 556899999999865 4433 499999999999999764 47999 998654
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.34 E-value=3.8e-07 Score=63.31 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=37.4
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHh-cCCCCccccCCCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLA 181 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~ 181 (184)
-|.+|--.+. ...|+.| |+|+|+.+|+..|.+ +.++||.|+.++.
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4777877665 5678888 999999999999985 4688999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.22 E-value=9.4e-07 Score=71.02 Aligned_cols=48 Identities=19% Similarity=0.589 Sum_probs=40.3
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCC--CCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT--TCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~--~CP~CR~~l~ 181 (184)
...+|+||.+-...|..+ +.|+|.||.+|++.|++++. +||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 467899999999987555 34999999999999997654 8999998764
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.30 E-value=0.00021 Score=46.00 Aligned_cols=51 Identities=22% Similarity=0.443 Sum_probs=38.8
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCccccCCCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSNLASEP 184 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~l~~~p 184 (184)
..+.+|.||.+. ..+..-..|...||..|++..|.. .-.||.|+++..+.|
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~P 64 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAP 64 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCCC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCccCC
Confidence 355689999743 345555579999999999988854 347999998887766
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.37 E-value=0.011 Score=40.41 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=26.4
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHH
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 166 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~W 166 (184)
++..|.||++++..+....-+. |+|.|+..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3468999998754444444455 9999999999983
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.62 E-value=0.012 Score=40.22 Aligned_cols=48 Identities=23% Similarity=0.508 Sum_probs=37.8
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
.+-..|-.|+-+.+ ..+ . -..|.+|..|+...|.....||+|.++|..
T Consensus 26 ~G~~nCKsCWf~~k--~LV-~--C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLV-E--CNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS--SEE-E--CSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cCcccChhhccccC--Cee-e--ecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 36678999997654 333 2 145999999999999999999999987753
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.48 E-value=0.04 Score=34.45 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=33.4
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh----cCCCCccccCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----SHTTCPVCRSN 179 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~----~~~~CP~CR~~ 179 (184)
..+..|.||.+. ..+..-..|...||..|++.-+. ..-.||.|++.
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356689999863 34545556889999999998653 34479999764
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.51 E-value=0.026 Score=35.47 Aligned_cols=50 Identities=22% Similarity=0.550 Sum_probs=35.8
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh-----cCCCCccccCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----SHTTCPVCRSN 179 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~ 179 (184)
.++..|+||...+.++.....-..|..=||..|+..--. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 356689999999876555555456888899999864321 34579999764
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=91.73 E-value=0.046 Score=34.18 Aligned_cols=47 Identities=23% Similarity=0.508 Sum_probs=32.9
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCccccCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSNL 180 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~l 180 (184)
..+..|.||.+. + .+..-..|...||..|+..-+.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 356679999852 3 34444568899999999865532 34699997654
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.37 E-value=0.042 Score=35.59 Aligned_cols=51 Identities=18% Similarity=0.419 Sum_probs=36.0
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh----cCCCCccccCCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----SHTTCPVCRSNLA 181 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~----~~~~CP~CR~~l~ 181 (184)
.+...|.||..... ++.+..-..|.--||..|+..-.. ..-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34557999987754 444555557888999999976543 2457999976544
No 80
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=89.67 E-value=0.49 Score=34.64 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=33.7
Q ss_pred CCCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh-----------cCCCCccccC
Q 045417 129 GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----------SHTTCPVCRS 178 (184)
Q Consensus 129 ~~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~-----------~~~~CP~CR~ 178 (184)
+..+..|.+|-+. ..+.....|..+||..||+.=+. ..-.||.|+.
T Consensus 60 Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456789999964 34555557999999999996552 2457999974
No 81
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=89.66 E-value=0.061 Score=33.88 Aligned_cols=51 Identities=18% Similarity=0.508 Sum_probs=35.9
Q ss_pred CCcccCccccccC-CCCceeecCCCCCcccHHHHHHHH-------hcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFE-DDETLRLIPKCDHVFHPECIDAWL-------ESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~-~~~~~r~lp~C~H~FH~~CI~~Wl-------~~~~~CP~CR~~l~ 181 (184)
++..|.||..... +++.+..-..|.-.||..|+..=+ ...-.||.|+....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 5568999998653 334555656799999999987643 23457999976543
No 82
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=89.49 E-value=0.13 Score=33.16 Aligned_cols=49 Identities=18% Similarity=0.507 Sum_probs=34.8
Q ss_pred CCCcccCcccccc-CCCCceeecCCCCCcccHHHHHHHH--hcCCCCccccC
Q 045417 130 KGALECAVCLNEF-EDDETLRLIPKCDHVFHPECIDAWL--ESHTTCPVCRS 178 (184)
Q Consensus 130 ~~~~eCaICL~~f-~~~~~~r~lp~C~H~FH~~CI~~Wl--~~~~~CP~CR~ 178 (184)
.++..|.||.+.- .+++.+..-..|.-.||..|+..-. +..-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3566899998764 3445666666799999999997543 23346988865
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.47 E-value=0.19 Score=29.87 Aligned_cols=44 Identities=34% Similarity=0.758 Sum_probs=30.5
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCccccC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRS 178 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~ 178 (184)
.|.||...-.. +.+..-..|...||..|++.=+.+ .-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899876433 344455579999999999764432 346999975
No 84
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=89.44 E-value=0.097 Score=35.17 Aligned_cols=49 Identities=18% Similarity=0.510 Sum_probs=34.6
Q ss_pred CCcccCcccccc-CCCCceeecCCCCCcccHHHHHHHH--hcCCCCccccCC
Q 045417 131 GALECAVCLNEF-EDDETLRLIPKCDHVFHPECIDAWL--ESHTTCPVCRSN 179 (184)
Q Consensus 131 ~~~eCaICL~~f-~~~~~~r~lp~C~H~FH~~CI~~Wl--~~~~~CP~CR~~ 179 (184)
++..|.||.+.- .+++.+.....|.-.||..|+..-+ ...-.||.|+..
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 566899999763 3344566666788999999997543 234479999654
No 85
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.34 E-value=0.35 Score=31.54 Aligned_cols=50 Identities=18% Similarity=0.428 Sum_probs=34.2
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHH-----hcCCCCccccCCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-----ESHTTCPVCRSNL 180 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl-----~~~~~CP~CR~~l 180 (184)
.....| ||...++++.....-..|..=||..|+.--- .....||.|+..-
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 345567 9999886555555555688889999985321 1345799998754
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=88.86 E-value=0.11 Score=36.32 Aligned_cols=45 Identities=29% Similarity=0.697 Sum_probs=31.9
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCccccC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRS 178 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~ 178 (184)
.|.||.+.-.+++.+..-..|...||..|+++-|.. .-.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 578888653344455555679999999999876643 347999975
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.40 E-value=0.048 Score=33.39 Aligned_cols=44 Identities=30% Similarity=0.710 Sum_probs=31.4
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~ 178 (184)
.+..|.||.+. + .+..-..|...||..|++.-+.. .-.||.|++
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 55689999974 3 34444568999999999865532 346998864
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=88.31 E-value=0.14 Score=35.63 Aligned_cols=46 Identities=24% Similarity=0.536 Sum_probs=30.4
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh----cCCCCccc
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----SHTTCPVC 176 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~----~~~~CP~C 176 (184)
.++..|.||.+.=+..+ +..-..|+..||..|++..+. ..-.||-|
T Consensus 5 ~~~~~C~~C~~~g~~~~-ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLD-QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCCSCBTTTCCCCCTTT-SEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCCcCCCCCCCCcC-CeECCCCCCCcChHHhCCccccccccCccCCcC
Confidence 46678999987633222 334356999999999988763 22345554
No 89
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.84 E-value=0.5 Score=31.49 Aligned_cols=32 Identities=28% Similarity=0.698 Sum_probs=23.0
Q ss_pred CCcccCccccccCCCC--ceeecCCCCCcccHHHHHHH
Q 045417 131 GALECAVCLNEFEDDE--TLRLIPKCDHVFHPECIDAW 166 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~--~~r~lp~C~H~FH~~CI~~W 166 (184)
.+..|.||-. +..++ ..|+ |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~-~t~~~l~pCRv---C~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV-WTAESLFPCRV---CTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC-CCSSCCSSCSS---SSSCCCHHHHHHH
T ss_pred CCcccCcccc-ccccceecccc---ccccccHhhcccc
Confidence 5668999973 33333 3343 9999999999996
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.76 E-value=0.24 Score=33.30 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=33.3
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCccccCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSN 179 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 179 (184)
..+..|.+|.+. ++ +.....|.-.||..|+++=+.. .-.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456689999964 33 4455568889999999776643 3469999754
No 91
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=87.54 E-value=0.74 Score=33.13 Aligned_cols=45 Identities=22% Similarity=0.444 Sum_probs=32.4
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHH-----------hcCCCCccccC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-----------ESHTTCPVCRS 178 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl-----------~~~~~CP~CR~ 178 (184)
..+..|.||-+. ..+..-..|-.+||.+||+.-+ ...-.|+.|+.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 355679999964 4455556788999999999742 12357999964
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.33 E-value=0.072 Score=33.75 Aligned_cols=45 Identities=29% Similarity=0.581 Sum_probs=32.1
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh----cCCCCccccCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----SHTTCPVCRSN 179 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~----~~~~CP~CR~~ 179 (184)
++..|.||.+. + .+..-..|...||..|+..-+. ..-.||.|+..
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 56689999864 3 3445556889999999986543 23469999653
No 93
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=87.21 E-value=2.3 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.360 Sum_probs=13.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045417 53 FSPSLAIIIVVLISALFFMGFFSIYIRH 80 (184)
Q Consensus 53 ~~~~~~iii~vli~~l~~l~~~~i~~r~ 80 (184)
...+.+++++++ .++++.+.+.+|+|+
T Consensus 11 ~~~Ia~~vVGvl-l~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 11 LTSIISAVVGIL-LVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHH-HHHHHHHHHHhheeh
Confidence 344555566633 333344444555554
No 94
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=86.77 E-value=0.16 Score=32.59 Aligned_cols=45 Identities=33% Similarity=0.725 Sum_probs=30.0
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhc-----CCCCccccCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-----HTTCPVCRSN 179 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~~ 179 (184)
.|.||...- +++.+..-..|...||..|+++=|.+ .-.||.|+.+
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 456777542 33455555579999999999854432 4479999753
No 95
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=86.41 E-value=0.28 Score=33.51 Aligned_cols=47 Identities=19% Similarity=0.432 Sum_probs=32.4
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh---cCCCCccccC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE---SHTTCPVCRS 178 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~---~~~~CP~CR~ 178 (184)
.+...| ||-....++. +.....|.--||..|+..=.. ....||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345678 8987766554 444456999999999865332 2347999974
No 96
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=86.40 E-value=0.61 Score=29.38 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=33.3
Q ss_pred CCcccCccccccCCCCceeecC-CCCCcccHHHHHHH------Hh----cCCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLIP-KCDHVFHPECIDAW------LE----SHTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp-~C~H~FH~~CI~~W------l~----~~~~CP~CR~ 178 (184)
....|.+|...+.+++..+... .|.-=||..|+.-- +. .+-.||.|++
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 4557999999998877776666 68888999997322 11 1346888853
No 97
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=86.08 E-value=1.7 Score=27.46 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Q 045417 59 IIIVVLISALFFMGFFSIYIRHCSDSS 85 (184)
Q Consensus 59 iii~vli~~l~~l~~~~i~~r~~~~~~ 85 (184)
|+++..+.++++.++.+++.-+|..++
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRr 38 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRR 38 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 777777777777777766444454443
No 98
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=85.85 E-value=0.12 Score=32.05 Aligned_cols=44 Identities=30% Similarity=0.710 Sum_probs=31.3
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~ 178 (184)
.+..|.||... + .+..-..|.-.||..|+++=+.. .-.||.|+.
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 45689999874 3 34444569999999999865532 346999865
No 99
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=85.77 E-value=0.19 Score=37.54 Aligned_cols=47 Identities=21% Similarity=0.571 Sum_probs=33.7
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHH-----hcCCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-----ESHTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl-----~~~~~CP~CR~ 178 (184)
+...| +|.....++........|..-||..|+..-- ...-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 55679 9999876555555555788899999985321 23557999975
No 100
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.24 E-value=0.3 Score=31.58 Aligned_cols=51 Identities=22% Similarity=0.525 Sum_probs=33.7
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHH---------HhcCCCCccccCCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW---------LESHTTCPVCRSNLASE 183 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~W---------l~~~~~CP~CR~~l~~~ 183 (184)
....| ||......+. ...-..|..=||..|+..- -.....||.|+..-.+.
T Consensus 15 ~~~~C-~C~~~~~~~~-MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~ 74 (76)
T 1wem_A 15 NALYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPS 74 (76)
T ss_dssp TCCCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSS
T ss_pred CCCEE-ECCCccCCCC-EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcC
Confidence 44567 8998876433 3343468888999998421 12467899998765544
No 101
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.71 E-value=0.72 Score=29.23 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=30.2
Q ss_pred CcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 132 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 132 ~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
...|+.|-+.+.+++.+.. -+..||.+| .+|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 3479999999887776654 567889887 568888887764
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.17 E-value=1.8 Score=29.99 Aligned_cols=33 Identities=27% Similarity=0.589 Sum_probs=23.9
Q ss_pred CcccCcccccc-----CCCCceeecCCCCCcccHHHHH
Q 045417 132 ALECAVCLNEF-----EDDETLRLIPKCDHVFHPECID 164 (184)
Q Consensus 132 ~~eCaICL~~f-----~~~~~~r~lp~C~H~FH~~CI~ 164 (184)
...|.+|+..= .+++.+..-..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 44799998763 2234555555799999999995
No 103
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.28 E-value=1.6 Score=28.15 Aligned_cols=41 Identities=29% Similarity=0.555 Sum_probs=29.6
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
....|+-|-+.+.+.+.+.. -+..||.+| .+|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCC
Confidence 34579999999877776643 567899888 567777766653
No 104
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=82.16 E-value=1.2 Score=30.93 Aligned_cols=44 Identities=20% Similarity=0.488 Sum_probs=29.5
Q ss_pred CCCcccCccccccCCCCceeecC--CCCCcccHHHHHHHHhc----CCCCccccCC
Q 045417 130 KGALECAVCLNEFEDDETLRLIP--KCDHVFHPECIDAWLES----HTTCPVCRSN 179 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp--~C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 179 (184)
.++..|.+|.+ +..+..-. .|...||..|+. |.. .-.||-|+..
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 46678999983 23444443 488999999998 543 2358877544
No 105
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.16 E-value=0.18 Score=33.77 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=33.7
Q ss_pred CcccCccccccCC-CCceeecCCCCCcccHHHHHHHHh--------cCCCCccccC
Q 045417 132 ALECAVCLNEFED-DETLRLIPKCDHVFHPECIDAWLE--------SHTTCPVCRS 178 (184)
Q Consensus 132 ~~eCaICL~~f~~-~~~~r~lp~C~H~FH~~CI~~Wl~--------~~~~CP~CR~ 178 (184)
+..|.||...-.. ++.+.....|...||..|++.=|. ..-.|+.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 4579999976432 345666667999999999986543 2347999864
No 106
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=81.72 E-value=0.51 Score=28.22 Aligned_cols=44 Identities=20% Similarity=0.414 Sum_probs=30.7
Q ss_pred ccCccccccCCCCceeecC-CCCCcccHHHHHHH----HhcCCCCcccc
Q 045417 134 ECAVCLNEFEDDETLRLIP-KCDHVFHPECIDAW----LESHTTCPVCR 177 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp-~C~H~FH~~CI~~W----l~~~~~CP~CR 177 (184)
.|.+|...+.+++....-. .|.-=||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4789999887666555555 58877999997432 13566799985
No 107
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=80.17 E-value=3.8 Score=27.01 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=31.1
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhc
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES 169 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~ 169 (184)
.....|.+|.+.+++..-+.--..=+|.||-.|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3567899999999987766433335699999999999864
No 108
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.79 E-value=2.3 Score=26.34 Aligned_cols=40 Identities=20% Similarity=0.412 Sum_probs=27.0
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..|+-|-+.+.+++.+.. .-+..||.+| .+|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE--YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC--STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE--ECccccCccc--------CeECCCCCcCCC
Confidence 478888888876533322 2567888777 567778777654
No 109
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=79.66 E-value=1.3 Score=30.89 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=23.9
Q ss_pred cccCccccccC------CCCceeecCCCCCcccHHHHHHH
Q 045417 133 LECAVCLNEFE------DDETLRLIPKCDHVFHPECIDAW 166 (184)
Q Consensus 133 ~eCaICL~~f~------~~~~~r~lp~C~H~FH~~CI~~W 166 (184)
..|.||+..-. +++.+..-..|+..||..|++.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 36999987541 23345555569999999998754
No 110
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.57 E-value=0.18 Score=34.06 Aligned_cols=47 Identities=30% Similarity=0.544 Sum_probs=33.0
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh----cCCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----SHTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~----~~~~CP~CR~ 178 (184)
+...|.||...-. .+.+..-..|...||..|+.+=|. ..-.||.|+.
T Consensus 15 ~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4557999997643 234555567999999999985443 2346999964
No 111
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.56 E-value=1.5 Score=28.28 Aligned_cols=40 Identities=30% Similarity=0.661 Sum_probs=29.7
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
....|+-|-+.+.+++.+.. -+..||.+| .+|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34579999998887776654 467888887 56888887765
No 112
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=78.28 E-value=7.5 Score=22.46 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045417 57 LAIIIVVLISALFFMGFFSIYIRH 80 (184)
Q Consensus 57 ~~iii~vli~~l~~l~~~~i~~r~ 80 (184)
.+.+++-++.++++.+.+++|.|+
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeehHHHHHHHHHHHHHHHHhhh
Confidence 333443333333344444445553
No 113
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.18 E-value=1.9 Score=28.24 Aligned_cols=38 Identities=29% Similarity=0.596 Sum_probs=20.5
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
..|+-|-+.+.+.+.++. -+..||.+| .+|-.|...|.
T Consensus 16 ~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 53 (91)
T 2d8y_A 16 ETCVECQKTVYPMERLLA---NQQVFHISC--------FRCSYCNNKLS 53 (91)
T ss_dssp CBCTTTCCBCCTTSEEEC---SSSEEETTT--------CBCTTTCCBCC
T ss_pred CcCccCCCccCCceeEEE---CCCEECCCC--------CeeCCCCCCCC
Confidence 356666666665554422 455666665 34555555444
No 114
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=77.70 E-value=0.3 Score=31.92 Aligned_cols=45 Identities=33% Similarity=0.725 Sum_probs=28.9
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhc----C-CCCccccCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----H-TTCPVCRSN 179 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~-~~CP~CR~~ 179 (184)
.|.||...- +++.+..-..|...||..|+++-|.. . -.||.|+.+
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 455665443 33445555578899999999976532 2 479999864
No 115
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=77.70 E-value=1.1 Score=28.34 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=25.6
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccH-HHHHHHHhcCCCCccccCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHP-ECIDAWLESHTTCPVCRSNL 180 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~-~CI~~Wl~~~~~CP~CR~~l 180 (184)
+-..|..|-..+..+.-. . .=+..|+. .|...-+ ...|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~-~--~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHA-E--HEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEE-E--ETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceE-C--cCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 456677787777665322 1 24566777 4765532 34576665443
No 116
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=77.54 E-value=2.1 Score=27.34 Aligned_cols=46 Identities=24% Similarity=0.517 Sum_probs=29.6
Q ss_pred CCcccCccccccCCCCceeecCC--CC-CcccHHHHHHHHh----cCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPK--CD-HVFHPECIDAWLE----SHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~--C~-H~FH~~CI~~Wl~----~~~~CP~CR~~l~ 181 (184)
+...| ||..... ++ +..-.. |. .-||..|+. |. .+-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 45567 8987643 43 433334 55 579999997 43 2347999987543
No 117
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.40 E-value=0.46 Score=31.01 Aligned_cols=45 Identities=27% Similarity=0.671 Sum_probs=31.4
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhc-----CCCCccccCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-----HTTCPVCRSN 179 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~-----~~~CP~CR~~ 179 (184)
.|.||...-. ++.+..-..|...||..|+++=|.. .-.||.|+.+
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccCc
Confidence 7889986533 3445555679999999999854432 3479999753
No 118
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.28 E-value=2.7 Score=26.00 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=5.7
Q ss_pred ccCccccccCC
Q 045417 134 ECAVCLNEFED 144 (184)
Q Consensus 134 eCaICL~~f~~ 144 (184)
.|+.|-+.+..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1x61_A 7 GCGGCGEDVVG 17 (72)
T ss_dssp CCSSSCSCCCS
T ss_pred CCccCCCccCC
Confidence 45555555443
No 119
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=77.10 E-value=1.9 Score=28.30 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=26.7
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHH
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 166 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~W 166 (184)
.+...|.+|...|.--..-.--..||++|+.+|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3566899999999754332233459999999997654
No 120
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=76.95 E-value=0.59 Score=32.39 Aligned_cols=27 Identities=41% Similarity=0.869 Sum_probs=18.7
Q ss_pred CCCCcccHHHHHHHHhcCCCCccccCCCCCCC
Q 045417 153 KCDHVFHPECIDAWLESHTTCPVCRSNLASEP 184 (184)
Q Consensus 153 ~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~p 184 (184)
+||+.| ..=+.....||.|+++-..+|
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCee-----cccCCCCCCCcCCCCCccCCc
Confidence 599998 112234578999999876665
No 121
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.90 E-value=1.9 Score=27.15 Aligned_cols=42 Identities=19% Similarity=0.545 Sum_probs=28.8
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
....|+-|-+.+..++.+... -+..||.+| .+|-.|+..|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 345799999988765544321 567888887 567778777653
No 122
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.84 E-value=2 Score=26.60 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=25.4
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..|+.|-+.+.+++.+... -+..||.+| .+|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 3688888887765433221 456788777 457777776654
No 123
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=76.84 E-value=1.8 Score=28.32 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=26.5
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHH
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 166 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~W 166 (184)
.+...|.+|...|.--..-.--..||.+|+.+|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3556899999999754322233459999999997653
No 124
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=76.59 E-value=0.74 Score=29.57 Aligned_cols=39 Identities=33% Similarity=0.620 Sum_probs=25.1
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..|+.|-+.+.+++.+.. -+..||.+| .+|-.|+..|..
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 468888887776665543 456777766 446666665543
No 125
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=76.26 E-value=4.9 Score=23.25 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 045417 69 FFMGFFSIYIRH 80 (184)
Q Consensus 69 ~~l~~~~i~~r~ 80 (184)
++.+.+.+|.|+
T Consensus 26 ii~~~~~~~~RR 37 (44)
T 2ks1_B 26 VVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhh
Confidence 333444445553
No 126
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.15 E-value=0.32 Score=31.10 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=33.9
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHH----hcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL----ESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl----~~~~~CP~CR~~l~ 181 (184)
....| ||.....+++....-..|..=||..|+..-- .....||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 45578 7998876665455555688789999986432 23457999976433
No 127
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.03 E-value=2 Score=28.88 Aligned_cols=46 Identities=24% Similarity=0.517 Sum_probs=29.5
Q ss_pred CCcccCccccccCCCCceeecCC--CC-CcccHHHHHHHHh----cCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPK--CD-HVFHPECIDAWLE----SHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~--C~-H~FH~~CI~~Wl~----~~~~CP~CR~~l~ 181 (184)
+...| ||..... ++ +..... |. .-||..|+. |. .+..||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 45567 9988643 33 333334 54 579999997 43 2457999987644
No 128
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.94 E-value=3.1 Score=25.75 Aligned_cols=41 Identities=22% Similarity=0.486 Sum_probs=26.5
Q ss_pred CcccCccccccCC--CCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 132 ALECAVCLNEFED--DETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 132 ~~eCaICL~~f~~--~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
...|+-|-+.+.+ ++.+.. .-+..||.+| .+|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCccc--------CEeccCCCcCCC
Confidence 3478888888875 323222 2567788877 467777777653
No 129
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.12 E-value=1.2 Score=28.85 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=32.5
Q ss_pred CCcccCccccccCCCCceeecC--CCCCcccHHHHHHHH---------hcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIP--KCDHVFHPECIDAWL---------ESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp--~C~H~FH~~CI~~Wl---------~~~~~CP~CR~~l~~ 182 (184)
....| ||-.....+..+ .-. .|..=||..|+.--- ..+..||.|+..-.+
T Consensus 15 ~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred CCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 45678 899875554333 333 588889999985321 235679999765443
No 130
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.07 E-value=3.2 Score=26.36 Aligned_cols=40 Identities=20% Similarity=0.528 Sum_probs=29.0
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..|+.|-+.+..++.+.. .-+..||.+| .+|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccCC
Confidence 479999998887665432 2567899887 568888877754
No 131
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.57 E-value=3.2 Score=26.47 Aligned_cols=39 Identities=21% Similarity=0.537 Sum_probs=25.3
Q ss_pred CcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 132 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 132 ~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
...|+-|-+.+. ++.+. .-+..||.+| .+|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 446888888777 33332 2566788777 567777776653
No 132
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=74.46 E-value=1.7 Score=28.92 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=26.1
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHH
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 166 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~W 166 (184)
+...|.+|...|.--..-.-...||++|+..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 445899999999754333333469999999997654
No 133
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=74.10 E-value=0.73 Score=29.23 Aligned_cols=47 Identities=21% Similarity=0.579 Sum_probs=31.5
Q ss_pred CCCcccCccccccCCCCceeecCCCCCcccHHHHHHHH---hcCCCCccccC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL---ESHTTCPVCRS 178 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl---~~~~~CP~CR~ 178 (184)
.+...| ||..... ++....-..|..=||..|+..-- .....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 356678 9988765 44344445688889999985432 23457999975
No 134
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=73.30 E-value=1.8 Score=29.83 Aligned_cols=49 Identities=27% Similarity=0.568 Sum_probs=34.3
Q ss_pred CcccCccccccCCCCceeecC-CCCCcccHHHHHHHH----------hcCCCCccccCCC
Q 045417 132 ALECAVCLNEFEDDETLRLIP-KCDHVFHPECIDAWL----------ESHTTCPVCRSNL 180 (184)
Q Consensus 132 ~~eCaICL~~f~~~~~~r~lp-~C~H~FH~~CI~~Wl----------~~~~~CP~CR~~l 180 (184)
...|.||...+.++....... .|.-=||.+|+.--- ..+..||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 347999999997766555554 588789999974221 1345799997654
No 135
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=73.06 E-value=1.9 Score=30.62 Aligned_cols=36 Identities=19% Similarity=0.424 Sum_probs=25.7
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHH
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 166 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~W 166 (184)
+...|.+|...|.--..-.-...||++|+..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 455899999999754322233459999999996544
No 136
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=73.02 E-value=2.3 Score=25.88 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=26.7
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..|+-|-+.+. ++.+. .-+..||.+| ..|-.|+..|..
T Consensus 6 ~~C~~C~~~I~-~~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVN---AMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEEC---CTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEEE---ECccccccCc--------CEECCCCCCCCC
Confidence 47888988887 44332 2567888887 568888877754
No 137
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.31 E-value=2.5 Score=27.66 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=25.4
Q ss_pred CCCCcccCccccccCCCCceeecCCCCCcccHHHHHH
Q 045417 129 GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDA 165 (184)
Q Consensus 129 ~~~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~ 165 (184)
+.+...|.+|...|.--..----..||.+|+..|...
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3455689999999964332222235999999999654
No 138
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.17 E-value=2.7 Score=26.77 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=23.8
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHH
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDA 165 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~ 165 (184)
.+|.+|...|.--..-.--..||.+|+.+|-..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 489999999975432222335999999999653
No 139
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=72.17 E-value=2.3 Score=30.68 Aligned_cols=35 Identities=14% Similarity=0.345 Sum_probs=26.1
Q ss_pred CCCcccCccccccC-CCCceeecCCCCCcccHHHHH
Q 045417 130 KGALECAVCLNEFE-DDETLRLIPKCDHVFHPECID 164 (184)
Q Consensus 130 ~~~~eCaICL~~f~-~~~~~r~lp~C~H~FH~~CI~ 164 (184)
.+...|++|...|. .+..-+....|+|.+|..|=.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 46779999999993 334445556799999998843
No 140
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=72.05 E-value=5.8 Score=22.12 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 045417 55 PSLAIIIVVLISALFFMGFFSI 76 (184)
Q Consensus 55 ~~~~iii~vli~~l~~l~~~~i 76 (184)
.+..+++++++.+.++.++.++
T Consensus 12 aIAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHHHHH
Confidence 4555666665555555444433
No 141
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.99 E-value=3.6 Score=25.32 Aligned_cols=37 Identities=27% Similarity=0.675 Sum_probs=20.7
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
..|+-|-+.+.+ +.+.. -+..||.+| .+|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIKA---MNNSWHPEC--------FRCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCS-CCEEE---TTEEECTTT--------SBCSSSCCBCS
T ss_pred CcCccCCCEecc-eEEEE---CcccccccC--------CEeCCCCCcCC
Confidence 357777766652 33322 455666666 35666666554
No 142
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.61 E-value=3.8 Score=25.71 Aligned_cols=39 Identities=23% Similarity=0.594 Sum_probs=26.7
Q ss_pred cccCccccccCC--C-CceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 133 LECAVCLNEFED--D-ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 133 ~eCaICL~~f~~--~-~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..|+-|-+.+.+ + +.+.. -+..||.+| .+|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a---~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF---QDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE---TTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEEE---CCcccCccc--------CChhhCCCcCCC
Confidence 378899888875 2 33332 567889888 567777777653
No 143
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=71.53 E-value=2.6 Score=27.99 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=25.0
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHH
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDA 165 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~ 165 (184)
+...|.+|...|.--..-.-...||++|+..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 45589999999975432223335999999999654
No 144
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.80 E-value=4.3 Score=24.87 Aligned_cols=37 Identities=24% Similarity=0.659 Sum_probs=21.0
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
..|+-|-+.+.+ +.+.. -+..||.+| .+|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGVTY---REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SEEES---SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeecc-ceEEE---CccccCCCC--------CccCCCCCcCC
Confidence 357777776653 22222 456677666 45666666654
No 145
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=70.55 E-value=2.9 Score=39.52 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=39.4
Q ss_pred CCcccCccccccCCCCceeecCCCC-CcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCD-HVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~-H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
+...|+|-++-+.++.. +| -| +.|-..+|..|+.++.+||.=|.++..
T Consensus 890 ~~F~cPIs~~lM~DPVi---lp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVI---LP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCSSEEE---CT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHhCCeE---cC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 56679999999987533 35 66 689999999999999999998887753
No 146
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=68.38 E-value=0.7 Score=32.80 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=28.1
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccc
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 176 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~C 176 (184)
+...|..|-..|.--..-.-...||.+|+..|.+........|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 4458999999997532222334699999999976654444456555
No 147
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.36 E-value=4.9 Score=26.12 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=26.9
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
....|+-|-+.+. ++.+.. -+..||.+| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLVA---LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEEE---TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEEE---CCccccccC--------CccCCCCCCCCC
Confidence 3447888888874 344432 567888777 567788777653
No 148
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=67.64 E-value=1.8 Score=27.75 Aligned_cols=48 Identities=23% Similarity=0.511 Sum_probs=31.8
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh-----cCCCCccccCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----SHTTCPVCRSN 179 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~~ 179 (184)
....| ||...+.++.....-..|.-=||..|+.---. ....||.|+..
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34455 89888765555555556887899999953321 34579999753
No 149
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=67.00 E-value=1.2 Score=35.01 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=27.2
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHh----c-CCCCccccCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----S-HTTCPVCRSN 179 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~----~-~~~CP~CR~~ 179 (184)
.|.+|...=. ++.+.....|...||..|+++=|. . .-.||.|+.+
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 5788876432 334445557999999999995543 2 3479999753
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.83 E-value=2.6 Score=32.53 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=25.2
Q ss_pred CcccCccccccCCCCceeecCCCCCcccHHHHHHH
Q 045417 132 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 166 (184)
Q Consensus 132 ~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~W 166 (184)
+..|.+|...|.--..-.-...||++||..|-...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46999999999744322233459999999996543
No 151
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=66.82 E-value=13 Score=23.67 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 045417 56 SLAIIIVVLISALFFMGFFSIYIRHCSDSS 85 (184)
Q Consensus 56 ~~~iii~vli~~l~~l~~~~i~~r~~~~~~ 85 (184)
++-+.-.++.+++|++++++++-.+|.-..
T Consensus 15 tLRiGGLifA~vLfi~GI~iilS~KckCk~ 44 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIVLSRRCRCKF 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHcCccccCC
Confidence 555666666777788888888877775544
No 152
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=66.30 E-value=3.8 Score=25.07 Aligned_cols=42 Identities=19% Similarity=0.560 Sum_probs=30.5
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
....|+-|-..+..++.+.. .-+..||.+| ..|-.|...|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~--~~~~~~H~~C--------F~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQC--------FVCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE--ETTEEEETTT--------SSCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEE--eCcCeeCcCC--------CcccCCCCCCCC
Confidence 34589999999987776533 1567899888 468888877653
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.09 E-value=2.9 Score=32.58 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=26.2
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHH
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 166 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~W 166 (184)
++..|.+|...|.--..-.-...||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 345899999999754333334469999999997654
No 154
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.88 E-value=17 Score=24.25 Aligned_cols=51 Identities=16% Similarity=0.459 Sum_probs=35.3
Q ss_pred CCcccCccccccC---CCCceeecCCCCCcccHHHHHHHH-hcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFE---DDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~---~~~~~r~lp~C~H~FH~~CI~~Wl-~~~~~CP~CR~~l~ 181 (184)
....|.||-++.- +++...-...|+--.|..|.+-=. ..++.||-|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4468999999964 344333323466678999987665 45678999988764
No 155
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.73 E-value=5.6 Score=25.20 Aligned_cols=40 Identities=30% Similarity=0.542 Sum_probs=27.2
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..|+-|-..+..++.+.. .-+..||.+| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccCC
Confidence 379999998884333322 1467899887 568888777764
No 156
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.72 E-value=5 Score=25.46 Aligned_cols=37 Identities=30% Similarity=0.729 Sum_probs=24.9
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
..|+-|-+.+. ++.++. -+..||.+| .+|-.|++.|.
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCC
Confidence 37999998887 344433 567888887 45666666654
No 157
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.73 E-value=6.4 Score=24.02 Aligned_cols=36 Identities=25% Similarity=0.671 Sum_probs=17.5
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
.|+-|-+.+.+ +.+.. -+..||.+| .+|-.|+..|.
T Consensus 7 ~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 7 GCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred CCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 46666655542 22222 345556555 34555555543
No 158
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=63.91 E-value=2 Score=26.31 Aligned_cols=43 Identities=28% Similarity=0.578 Sum_probs=28.0
Q ss_pred CCcccCccccccCCCCceeecCC--CC-CcccHHHHHHHHhc----CCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLIPK--CD-HVFHPECIDAWLES----HTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~--C~-H~FH~~CI~~Wl~~----~~~CP~CR~ 178 (184)
+..-| ||.... .++ +..-.. |. .-||..|+. |.. +-.||.|++
T Consensus 8 e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44467 998864 243 444445 65 589999997 432 347999965
No 159
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.64 E-value=5.1 Score=25.37 Aligned_cols=36 Identities=22% Similarity=0.538 Sum_probs=19.6
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
.|+.|-+.+. ++.+.. -+..||.+| .+|-.|+..|.
T Consensus 17 ~C~~C~~~I~-~~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMT-GPFMVA---GEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCC-SCCBCC---TTCCBCTTS--------CBCTTTCCBCC
T ss_pred cCccCCCCcC-ceEEEE---CCceecccc--------CCccCCCCccC
Confidence 5666666666 232221 455666655 44666665553
No 160
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=63.34 E-value=6.1 Score=24.66 Aligned_cols=39 Identities=28% Similarity=0.582 Sum_probs=28.3
Q ss_pred cccCccccccCC---C-CceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 133 LECAVCLNEFED---D-ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 133 ~eCaICL~~f~~---~-~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
..|+-|-+.+.+ + +.+.. -+..||.+| .+|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY---EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE---TTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEE---CcceeCccc--------CEehhcCCCCCC
Confidence 479999998885 2 33333 567899888 568888888764
No 161
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=63.07 E-value=7.2 Score=25.21 Aligned_cols=39 Identities=28% Similarity=0.555 Sum_probs=26.7
Q ss_pred CcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 132 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 132 ~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
...|+-|-+.+.+ +.+.. -+..||.+| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVKA---RDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCEES---SSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEEEE---CCceECccC--------CEecCCCCCCCC
Confidence 3478888888775 33322 567888887 568888777754
No 162
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=62.90 E-value=1.5 Score=36.94 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh-------cCCCCccccCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-------SHTTCPVCRSNL 180 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~-------~~~~CP~CR~~l 180 (184)
+...|.+|...|.--..-.....||++||..|-..+.. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45689999999864322222335999999999877641 234577775544
No 163
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.13 E-value=1.1 Score=30.82 Aligned_cols=45 Identities=27% Similarity=0.578 Sum_probs=29.8
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCccccCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSN 179 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 179 (184)
.|.+|...-.+ +.+..-..|...||..|+++=+.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46677655333 345555579999999999865532 3469988653
No 164
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=61.71 E-value=2.2 Score=26.21 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=27.4
Q ss_pred CCcccCccccccCCCCceeecCC--CC-CcccHHHHHHHHh----cCCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLIPK--CD-HVFHPECIDAWLE----SHTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~--C~-H~FH~~CI~~Wl~----~~~~CP~CR~ 178 (184)
+..-| ||..... + .+..-.. |. .-||..|+. |. .+-.||.|++
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34467 8988642 3 3444344 44 579999997 43 2346999965
No 165
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=61.61 E-value=8.9 Score=24.15 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 045417 56 SLAIIIVVLISALFFMGFFSIYIRHCSDSS 85 (184)
Q Consensus 56 ~~~iii~vli~~l~~l~~~~i~~r~~~~~~ 85 (184)
++-+.-.++.+++|++++++++-++|+.+.
T Consensus 16 tLRigGLifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 16 SLQLGGLIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HheecchhhHHHHHHHHHHHHHcCcccccC
Confidence 555666666777788888888776665544
No 166
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=61.32 E-value=2.7 Score=22.18 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=20.7
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHH
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECI 163 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI 163 (184)
.|+.|-...-..+.+.. -|..||..|+
T Consensus 5 ~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred cCCccCCEEecceeEEE---CCeEecccCC
Confidence 79999988876666543 6788999884
No 167
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=60.87 E-value=5.4 Score=27.65 Aligned_cols=11 Identities=27% Similarity=0.604 Sum_probs=5.3
Q ss_pred ccCccccccCC
Q 045417 134 ECAVCLNEFED 144 (184)
Q Consensus 134 eCaICL~~f~~ 144 (184)
.|+-|-..+..
T Consensus 10 ~C~~C~~~I~~ 20 (123)
T 2l3k_A 10 LCASCDKRIRA 20 (123)
T ss_dssp CCSSSSCCCCT
T ss_pred cccCCCCeecC
Confidence 35555554443
No 168
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=60.17 E-value=1 Score=28.44 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=28.1
Q ss_pred CCcccCccccccCCCCceeec-CCCCCcccHHHHHHHH--------hcCCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLI-PKCDHVFHPECIDAWL--------ESHTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~l-p~C~H~FH~~CI~~Wl--------~~~~~CP~CR~ 178 (184)
+...| ||-.....+..+.-- +.|..=||..|+---- -.+..||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34567 897766655444321 1377779999973210 01357999974
No 169
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=60.16 E-value=3.9 Score=28.64 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=29.6
Q ss_pred CcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 132 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 132 ~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
...|+-|-..+.+...+.. -+..||.+| .+|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3479999999886554544 578899888 67888888774
No 170
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=59.68 E-value=5.3 Score=33.53 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=30.1
Q ss_pred cccCccccccCCCCceeecCCCCCc--ccHHHHHHHHh--cCCCCccccCCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHV--FHPECIDAWLE--SHTTCPVCRSNLAS 182 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~--FH~~CI~~Wl~--~~~~CP~CR~~l~~ 182 (184)
..|+|-...++.+ +|-.. |.|. |-..=+-.... ....||+|.+.+..
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 4699888877654 55554 9998 55333333322 34579999987653
No 171
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=59.66 E-value=2.2 Score=37.23 Aligned_cols=47 Identities=21% Similarity=0.525 Sum_probs=32.0
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHh-----cCCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----SHTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~-----~~~~CP~CR~ 178 (184)
+...| ||...++++........|.-=||..|+.---. ..-.||.|+.
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 44556 99998865555555556888899999843211 2357999974
No 172
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.45 E-value=7.4 Score=24.59 Aligned_cols=37 Identities=38% Similarity=0.818 Sum_probs=21.3
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
..|+-|-..+.+ ..+.. -+..||.+| .+|..|+..|.
T Consensus 16 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILD-RILRA---MGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCS-CCEEE---TTEEECTTT--------CBCSSSCCBCT
T ss_pred CccccCCCeecc-eeEEE---CCccccHHh--------cCcccCCCccC
Confidence 367777776652 23322 456677666 45666666654
No 173
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=58.49 E-value=2.9 Score=25.84 Aligned_cols=45 Identities=24% Similarity=0.508 Sum_probs=27.8
Q ss_pred CCcccCccccccCCCCceeecCC--CC-CcccHHHHHHHH--hcCCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLIPK--CD-HVFHPECIDAWL--ESHTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~--C~-H~FH~~CI~~Wl--~~~~~CP~CR~ 178 (184)
+...| ||.... .++ +..-.. |. .-||..|+..-- ..+-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 44567 998863 343 444445 44 789999997211 12447999975
No 174
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=58.30 E-value=1.1 Score=24.52 Aligned_cols=18 Identities=17% Similarity=0.604 Sum_probs=13.2
Q ss_pred CCcccCccccccCCCCce
Q 045417 131 GALECAVCLNEFEDDETL 148 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~ 148 (184)
++..|+||+.++...+.+
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 457899999888765544
No 175
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=58.11 E-value=9.8 Score=24.97 Aligned_cols=46 Identities=17% Similarity=0.489 Sum_probs=26.9
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
+=..|..|...+..+.-. . .=+..|+..|...- -...|..|...|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~-~--~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFV-A--KDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCE-E--ETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeE-C--cCCEEEChhHhhhh--cCCccccCCCccc
Confidence 445677777777433221 1 24566777775432 2357888887776
No 176
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=57.92 E-value=10 Score=31.93 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=29.1
Q ss_pred cccCccccccCCCCceeecCCCCCc--ccHHHHHHHHh--cCCCCccccCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHV--FHPECIDAWLE--SHTTCPVCRSNLA 181 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~--FH~~CI~~Wl~--~~~~CP~CR~~l~ 181 (184)
..|++-...+..+ +|-.. |.|. |-..=+-..-. ....||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4699888877654 55554 9997 44333333222 3457999988764
No 177
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.62 E-value=6.2 Score=24.94 Aligned_cols=37 Identities=32% Similarity=0.609 Sum_probs=24.3
Q ss_pred CcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCC
Q 045417 132 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 180 (184)
Q Consensus 132 ~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l 180 (184)
...|+-|-+.+.. +.+.. -+..||.+| .+|-.|+..|
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVKL---RDRHRHPEC--------YVCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCS-SCEEC---SSCEECTTT--------TSCSSSCCCH
T ss_pred CCccccCCCCccC-cEEEE---CcceeCcCc--------CeeCCCCCCC
Confidence 3478888888775 33322 567888887 4577776654
No 178
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=55.20 E-value=8.4 Score=26.50 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=32.8
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
+-..|..|-..+... .... .=|..|+..|...- -...|..|...|.+
T Consensus 29 ~CF~C~~C~~~L~~~-~f~~--~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGE-IYVM--VNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTS-EEEE--ETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcC-EEEe--ECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 456788898888643 2222 25777888888664 34679999988874
No 179
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.04 E-value=10 Score=23.56 Aligned_cols=36 Identities=25% Similarity=0.660 Sum_probs=17.9
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
.|+-|-..+.. +.+. .-+..||.+| .+|-.|+..|.
T Consensus 7 ~C~~C~~~I~~-~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITG-RVLE---AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSS-CCBC---CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CcccCCCEecC-eeEE---eCCCCCCCCc--------CEeCCCCCCCC
Confidence 56666665543 2221 2445566555 34555555543
No 180
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=54.38 E-value=10 Score=26.17 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=32.3
Q ss_pred CcccCccccccCC-CCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 132 ALECAVCLNEFED-DETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 132 ~~eCaICL~~f~~-~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
-..|..|-..+.+ +..... .=+..|+..|...-+..+..|-.|...|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~--~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYT--KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEE--ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEE--ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 3568888777763 222222 256678888888776655578888887764
No 181
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.61 E-value=10 Score=23.70 Aligned_cols=37 Identities=30% Similarity=0.713 Sum_probs=21.8
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
.|+-|-+.+.+ +.+.. -+..||.+| .+|-.|+..|..
T Consensus 17 ~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 17 KCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp BCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCS
T ss_pred ccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCC
Confidence 57777777664 33322 456677666 456666666543
No 182
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=53.26 E-value=12 Score=27.71 Aligned_cols=43 Identities=21% Similarity=0.529 Sum_probs=30.8
Q ss_pred CCcccCccccccCCCCceeecC--CCCCcccHHHHHHHHhc----------CCCCcccc
Q 045417 131 GALECAVCLNEFEDDETLRLIP--KCDHVFHPECIDAWLES----------HTTCPVCR 177 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp--~C~H~FH~~CI~~Wl~~----------~~~CP~CR 177 (184)
.+..|.||-+. ..+.... .|...|+.+||+.++.. .-.|=+|.
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 45679999853 4565544 58899999999999732 33677775
No 183
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=53.16 E-value=14 Score=31.25 Aligned_cols=44 Identities=27% Similarity=0.618 Sum_probs=32.3
Q ss_pred CCcccCccccccCCCCceeecC--CCCCcccHHHHHHHHh----------cCCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRLIP--KCDHVFHPECIDAWLE----------SHTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp--~C~H~FH~~CI~~Wl~----------~~~~CP~CR~ 178 (184)
.+..|.+|-+. ..+.... .|...||.+||+.++. ..-.|=+|.-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 45689999864 4455555 6999999999999982 3457888853
No 184
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=52.86 E-value=8.7 Score=23.60 Aligned_cols=42 Identities=31% Similarity=0.786 Sum_probs=29.9
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHH-hcCCCCccc
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVC 176 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl-~~~~~CP~C 176 (184)
..|--|...|.+.. ...-++|++.|+.+| |..+ ..=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 46999999996433 244678999999999 3333 333479988
No 185
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=52.72 E-value=8.6 Score=23.24 Aligned_cols=38 Identities=24% Similarity=0.649 Sum_probs=26.5
Q ss_pred ccCccccccCCC-CceeecCCCCCccc--HHHHHHHHhcCCCCccccCCCCC
Q 045417 134 ECAVCLNEFEDD-ETLRLIPKCDHVFH--PECIDAWLESHTTCPVCRSNLAS 182 (184)
Q Consensus 134 eCaICL~~f~~~-~~~r~lp~C~H~FH--~~CI~~Wl~~~~~CP~CR~~l~~ 182 (184)
.|+-|-+.+..+ +.+.. -+..|| .+| .+|-.|+.+|..
T Consensus 4 ~C~~C~~~I~~~~~~v~a---~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY---NNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEEE---TTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEEE---CCCccCCCCCC--------EECCCCCCcCCC
Confidence 688888888764 34433 567888 888 567777777654
No 186
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.64 E-value=9.7 Score=25.90 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=16.6
Q ss_pred CCcccCccccccCC-CCceeecCCCCCcccHHHHHHHHh
Q 045417 131 GALECAVCLNEFED-DETLRLIPKCDHVFHPECIDAWLE 168 (184)
Q Consensus 131 ~~~eCaICL~~f~~-~~~~r~lp~C~H~FH~~CI~~Wl~ 168 (184)
+-..|..|-..+.+ +..... .=+..|+..|...-+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~--~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYY--KLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCC--BTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCeeEE--ECCeeechHHHHHHhC
Confidence 34456666655543 222211 2345566666555443
No 187
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=52.51 E-value=1.5 Score=30.45 Aligned_cols=45 Identities=22% Similarity=0.577 Sum_probs=30.3
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhc----CCCCccccCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSN 179 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 179 (184)
.|.||...-.+ +.+..-..|...||..|+++=|.. .-.||.|+..
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 57788775433 344455579999999999864432 3469988653
No 188
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=50.11 E-value=9 Score=28.59 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=22.5
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
..|+.|-..+.+++.+.. -+..||.+| .+|-.|+..|.
T Consensus 116 ~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 153 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLE 153 (192)
T ss_dssp EECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCC
T ss_pred CcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCC
Confidence 357777777665555543 355666666 45666665554
No 189
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.46 E-value=11 Score=24.32 Aligned_cols=34 Identities=18% Similarity=0.456 Sum_probs=23.4
Q ss_pred CCCCcccCccccccCC-CCceeecCCCCCcccHHH
Q 045417 129 GKGALECAVCLNEFED-DETLRLIPKCDHVFHPEC 162 (184)
Q Consensus 129 ~~~~~eCaICL~~f~~-~~~~r~lp~C~H~FH~~C 162 (184)
.+++..|+.|.+.|-- .+.-..-+.|.|..+.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 4567799999999852 222233356999888887
No 190
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=49.44 E-value=9.2 Score=28.06 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=28.9
Q ss_pred CCcccCccccccCC-CCceeecCCCCCcccHHHHHHHHhcCC--CCcccc
Q 045417 131 GALECAVCLNEFED-DETLRLIPKCDHVFHPECIDAWLESHT--TCPVCR 177 (184)
Q Consensus 131 ~~~eCaICL~~f~~-~~~~r~lp~C~H~FH~~CI~~Wl~~~~--~CP~CR 177 (184)
++..|++|...|.- ...-+....|+|.+|..|= .|+.+.. .|-+|+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~ 115 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCH 115 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHH
Confidence 56789999998742 1223344569999999996 2332222 366664
No 191
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=48.35 E-value=10 Score=24.27 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 045417 56 SLAIIIVVLISALFFMGFFSIYIRHCSDSS 85 (184)
Q Consensus 56 ~~~iii~vli~~l~~l~~~~i~~r~~~~~~ 85 (184)
++-+.-.++.+++|++++++++-++|+-+.
T Consensus 18 tLRigGLifA~vLfi~GI~iilS~kcrCk~ 47 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLAGKCRCKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HheeccchhHHHHHHHHHHHHHcCccccCC
Confidence 555666666777788888888777766554
No 192
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=47.76 E-value=38 Score=19.42 Aligned_cols=30 Identities=10% Similarity=-0.062 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 045417 56 SLAIIIVVLISALFFMGFFSIYIRHCSDSS 85 (184)
Q Consensus 56 ~~~iii~vli~~l~~l~~~~i~~r~~~~~~ 85 (184)
.-+|..+++..++.+..+....+.+.++++
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 347667776667777766655555544443
No 193
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.40 E-value=12 Score=23.51 Aligned_cols=33 Identities=24% Similarity=0.586 Sum_probs=25.3
Q ss_pred CCCcccCccccccCCCCceeecCCC-CCcccHHHHHHHH
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKC-DHVFHPECIDAWL 167 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C-~H~FH~~CI~~Wl 167 (184)
.+..-|.||.++ ..+|-+. | +-+|+..|..+--
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHHc
Confidence 345579999987 5577775 9 7899999987753
No 194
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.96 E-value=16 Score=22.75 Aligned_cols=37 Identities=30% Similarity=0.668 Sum_probs=21.4
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
..|+-|-+.+.+. .+. .-+..||.+| .+|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~-~v~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GVT---YRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-CEE---SSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCc-EEE---ECCchhhhhh--------CCcccCCCcCC
Confidence 3577777766542 222 2456677666 45666666654
No 195
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=46.66 E-value=5.4 Score=26.68 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=27.4
Q ss_pred CCCcccCccccccCCCCceeecCCCC---CcccHHHHHHHH--hcCCCCcc-ccC
Q 045417 130 KGALECAVCLNEFEDDETLRLIPKCD---HVFHPECIDAWL--ESHTTCPV-CRS 178 (184)
Q Consensus 130 ~~~~eCaICL~~f~~~~~~r~lp~C~---H~FH~~CI~~Wl--~~~~~CP~-CR~ 178 (184)
++...| ||-.... ++ +.....|. --||..|+.--- ..+-.||. |++
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 345567 9987532 33 44434444 579999986210 23457999 863
No 196
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=45.72 E-value=8.6 Score=26.24 Aligned_cols=11 Identities=27% Similarity=1.054 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 045417 158 FHPECIDAWLE 168 (184)
Q Consensus 158 FH~~CI~~Wl~ 168 (184)
||.+|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 197
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=45.66 E-value=8.7 Score=26.18 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 045417 158 FHPECIDAWLE 168 (184)
Q Consensus 158 FH~~CI~~Wl~ 168 (184)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 198
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=45.48 E-value=12 Score=20.52 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045417 58 AIIIVVLISALFFMGFFSIYIRH 80 (184)
Q Consensus 58 ~iii~vli~~l~~l~~~~i~~r~ 80 (184)
+.+++ ++.++++.+.+.+|+|+
T Consensus 12 agVvg-lll~vii~l~~~~~iRR 33 (35)
T 1iij_A 12 ATVVG-VLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHH-HHHHHHHTTTTTHHHHH
T ss_pred HHHHH-HHHHHHHHHHhheEEee
Confidence 33444 33333444444556664
No 199
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.08 E-value=16 Score=26.59 Aligned_cols=38 Identities=34% Similarity=0.751 Sum_probs=21.0
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
.|+.|-+.+..++.+.. .-++.||.+| ..|-.|...|.
T Consensus 67 ~C~~C~~~I~~~~~v~~--a~~~~~H~~C--------F~C~~C~~~L~ 104 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVRR--AQDFVYHLHC--------FACVVCKRQLA 104 (169)
T ss_dssp BCTTTCCBCCTTSEEEE--ETTEEEEGGG--------CBCTTTCCBCC
T ss_pred cccccccccCCCcEEEE--cCCceEeeCC--------CcCCCCCCCCC
Confidence 56666666655443322 1456677666 35666666553
No 200
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.56 E-value=51 Score=19.73 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 045417 58 AIIIVVLISALF 69 (184)
Q Consensus 58 ~iii~vli~~l~ 69 (184)
.|++.++..+++
T Consensus 14 iIi~svl~GLll 25 (54)
T 2knc_A 14 WVLVGVLGGLLL 25 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444333333
No 201
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=43.40 E-value=44 Score=18.91 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 045417 57 LAIIIVVLI 65 (184)
Q Consensus 57 ~~iii~vli 65 (184)
.+++++++.
T Consensus 10 ~~Iv~gvi~ 18 (43)
T 2k9j_B 10 LVVLLSVMG 18 (43)
T ss_dssp HHHHHHHHH
T ss_pred eehHHHHHH
Confidence 344444333
No 202
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=42.09 E-value=14 Score=27.46 Aligned_cols=38 Identities=29% Similarity=0.691 Sum_probs=25.3
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
.|+.|-..+...+.+.. .-++.||.+| .+|-.|.+.|.
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC--------CeECCCCCCCC
Confidence 58888887776554332 2567888887 46777776663
No 203
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=42.08 E-value=18 Score=26.62 Aligned_cols=44 Identities=16% Similarity=0.396 Sum_probs=21.1
Q ss_pred CcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 132 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 132 ~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
-..|..|...+.... . . .=|..||..|...- -...|..|...|.
T Consensus 87 CF~C~~C~~~L~~~~-f-~--~~g~~yC~~~y~~~--f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 87 CLKCSDCHVPLAERC-F-S--RGESVYCKDDFFKR--FGTKCAACQLGIP 130 (182)
T ss_dssp TTSCTTTCCCCSSCC-E-E--ETTEEECHHHHHHT--TSCCCTTTCCCCC
T ss_pred cCccCCCCCccCCCc-e-e--ECCEeeecCccccc--cccccccCCCccC
Confidence 344555555554322 1 1 13445555554432 2345777766654
No 204
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=39.41 E-value=5.2 Score=25.24 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=13.7
Q ss_pred HHHHhcCCCCccccCCCC
Q 045417 164 DAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 164 ~~Wl~~~~~CP~CR~~l~ 181 (184)
+.||..--.||+|+.+|.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 456666678999998775
No 205
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=37.47 E-value=6 Score=20.60 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=6.2
Q ss_pred CCCccccCCC
Q 045417 171 TTCPVCRSNL 180 (184)
Q Consensus 171 ~~CP~CR~~l 180 (184)
.+||+|+..+
T Consensus 4 ~~CpvCk~q~ 13 (28)
T 2jvx_A 4 FCCPKCQYQA 13 (28)
T ss_dssp EECTTSSCEE
T ss_pred ccCccccccC
Confidence 3577777644
No 206
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=37.16 E-value=42 Score=16.89 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHHHH
Q 045417 54 SPSLAIIIVVLISALF 69 (184)
Q Consensus 54 ~~~~~iii~vli~~l~ 69 (184)
++.++.++.+++++..
T Consensus 2 spiVA~~lLIviav~a 17 (26)
T 3j1r_A 2 SPVIATLLLILIAVAA 17 (26)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 4566666655555443
No 207
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=35.91 E-value=3.1 Score=27.02 Aligned_cols=19 Identities=37% Similarity=0.868 Sum_probs=15.3
Q ss_pred CCCCcccHHHHHHHHhcCCCC
Q 045417 153 KCDHVFHPECIDAWLESHTTC 173 (184)
Q Consensus 153 ~C~H~FH~~CI~~Wl~~~~~C 173 (184)
.|+|.|+..|-..|=. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 6999999999999833 445
No 208
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.19 E-value=5.1 Score=24.57 Aligned_cols=36 Identities=25% Similarity=0.546 Sum_probs=25.4
Q ss_pred cccCccccccCCCCceeecC--C--CCCcccHHHHHHHHh
Q 045417 133 LECAVCLNEFEDDETLRLIP--K--CDHVFHPECIDAWLE 168 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp--~--C~H~FH~~CI~~Wl~ 168 (184)
..|+-|...++..+....+. . |++.|+..|..+|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 37898988887765332222 2 788899999888853
No 209
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=35.04 E-value=6.8 Score=23.02 Aligned_cols=41 Identities=20% Similarity=0.501 Sum_probs=26.0
Q ss_pred ccccccCCCCceeecCCCCCcccHHHHHHHH---hcCCCCccccC
Q 045417 137 VCLNEFEDDETLRLIPKCDHVFHPECIDAWL---ESHTTCPVCRS 178 (184)
Q Consensus 137 ICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl---~~~~~CP~CR~ 178 (184)
||..... +.....-..|+-=||..|+.--- ...-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6776655 33343444588789999985322 23457999975
No 210
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.30 E-value=34 Score=23.37 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=27.8
Q ss_pred CcccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 132 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 132 ~~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
...|+-|-+.+.+.+.+.. -+..||.+| .+|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a---~~~~wH~~C--------F~C~~C~~~L~ 43 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 43 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEE---TTEEECHHH--------HCCSSSCCCTT
T ss_pred CCCCcccCCEeCCcEEEEE---CCceeHhhC--------CCcCCCCCccc
Confidence 3478888888876654443 567888888 45888877774
No 211
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=33.43 E-value=57 Score=22.63 Aligned_cols=11 Identities=18% Similarity=0.549 Sum_probs=5.7
Q ss_pred cchHHHHHHHH
Q 045417 53 FSPSLAIIIVV 63 (184)
Q Consensus 53 ~~~~~~iii~v 63 (184)
||..+-+.+++
T Consensus 92 wwkn~K~~iii 102 (119)
T 2kog_A 92 WWKNLKMMIIL 102 (119)
T ss_dssp SCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55565554443
No 212
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=31.69 E-value=66 Score=17.49 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=13.2
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 045417 55 PSLAIIIVV-LISALFFMGFFSIYIRH 80 (184)
Q Consensus 55 ~~~~iii~v-li~~l~~l~~~~i~~r~ 80 (184)
..|+..+++ ++++|.+++--++|.|-
T Consensus 6 l~malt~i~gl~vif~~lg~tflywrg 32 (40)
T 2l9u_A 6 LTMALTVIAGLVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCceeEEEcc
Confidence 455554443 33444456666666553
No 213
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.23 E-value=15 Score=24.94 Aligned_cols=40 Identities=28% Similarity=0.665 Sum_probs=22.6
Q ss_pred cccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCCC
Q 045417 133 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 181 (184)
Q Consensus 133 ~eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 181 (184)
..|++|..+++... ++.++..|=.. +.....||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHH
Confidence 37999988865322 22223344222 234457888887764
No 214
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=29.41 E-value=60 Score=19.93 Aligned_cols=36 Identities=19% Similarity=0.529 Sum_probs=28.5
Q ss_pred CCcccCccccccCCCCceeecCCCCCcccHH-HHHHH
Q 045417 131 GALECAVCLNEFEDDETLRLIPKCDHVFHPE-CIDAW 166 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp~C~H~FH~~-CI~~W 166 (184)
-...|+-|-.++..|.....-...-|.||.. ||..+
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 3458999999999998765555677999865 98876
No 215
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=29.30 E-value=30 Score=23.70 Aligned_cols=37 Identities=30% Similarity=0.623 Sum_probs=18.7
Q ss_pred ccCccccccCCCCceeecCCCCCcccHHHHHHHHhcCCCCccccCCC
Q 045417 134 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 180 (184)
Q Consensus 134 eCaICL~~f~~~~~~r~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~~l 180 (184)
.|+.|-+.+...+.+.. .-+..||.+| ..|-.|.+.|
T Consensus 68 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 104 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 104 (131)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEEEGGG--------CBCTTTCCBC
T ss_pred ChhhcCCccCccceeEe--eCCceECccC--------cccCCCCCCC
Confidence 45555555554332222 1455566555 3566665555
No 216
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=27.32 E-value=63 Score=22.99 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 045417 57 LAIIIVVLISALFFMGFFSIYIRHCSD 83 (184)
Q Consensus 57 ~~iii~vli~~l~~l~~~~i~~r~~~~ 83 (184)
+.|++++.+..+|+++++.-|+|-.++
T Consensus 54 lYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 54 LYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 344455555566667777777775443
No 217
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=27.29 E-value=6.2 Score=25.80 Aligned_cols=18 Identities=28% Similarity=0.863 Sum_probs=14.3
Q ss_pred eecCCCCCcccHHHHHHH
Q 045417 149 RLIPKCDHVFHPECIDAW 166 (184)
Q Consensus 149 r~lp~C~H~FH~~CI~~W 166 (184)
...|.|++.|+..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 345569999999998887
No 218
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.63 E-value=30 Score=22.55 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=6.3
Q ss_pred ccCccccccCC
Q 045417 134 ECAVCLNEFED 144 (184)
Q Consensus 134 eCaICL~~f~~ 144 (184)
.|+.|-.++..
T Consensus 4 ~CP~C~~~l~~ 14 (81)
T 2jrp_A 4 TCPVCHHALER 14 (81)
T ss_dssp CCSSSCSCCEE
T ss_pred CCCCCCCcccc
Confidence 56666665543
No 219
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=26.48 E-value=24 Score=21.17 Aligned_cols=29 Identities=17% Similarity=0.524 Sum_probs=17.2
Q ss_pred CCcccCccccccCCCCceeecC--CCCCccc
Q 045417 131 GALECAVCLNEFEDDETLRLIP--KCDHVFH 159 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~lp--~C~H~FH 159 (184)
+-..|++|..+++..+..-..+ .|++.|-
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAYP 39 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEEE
T ss_pred hheeCCCCCCcceecCCEEEcCCcCCCcEEe
Confidence 4457999998765433222333 5777663
No 220
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=26.00 E-value=92 Score=17.33 Aligned_cols=26 Identities=23% Similarity=0.131 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045417 55 PSLAIIIVVLISALFFMGFFSIYIRH 80 (184)
Q Consensus 55 ~~~~iii~vli~~l~~l~~~~i~~r~ 80 (184)
-...|++.+...+.-.+.++.+.+|+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544445555555554
No 221
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.19 E-value=5.8 Score=32.52 Aligned_cols=47 Identities=15% Similarity=0.295 Sum_probs=28.7
Q ss_pred CCcccCccccccCCCCceee-cCCCC--CcccHHHHHHHHhcCCCCccccC
Q 045417 131 GALECAVCLNEFEDDETLRL-IPKCD--HVFHPECIDAWLESHTTCPVCRS 178 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r~-lp~C~--H~FH~~CI~~Wl~~~~~CP~CR~ 178 (184)
....|+||-..-..+ .++. -..=| |.+|.-|=.+|--.+..||.|-.
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 455899998765322 1110 00122 45666777788777889999965
No 222
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=21.85 E-value=34 Score=18.07 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=14.5
Q ss_pred CCcccCccccccCCCCcee
Q 045417 131 GALECAVCLNEFEDDETLR 149 (184)
Q Consensus 131 ~~~eCaICL~~f~~~~~~r 149 (184)
.-.||+.|..--++|+.-|
T Consensus 8 pfhecalcysitdpgerqr 26 (36)
T 2jyp_A 8 PFHECALCYSITDPGERQR 26 (36)
T ss_dssp TTTCCSSSTTTTTTTCTTC
T ss_pred ccchheeEEeecCcchhhh
Confidence 4458999999888877653
No 223
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.05 E-value=52 Score=24.25 Aligned_cols=22 Identities=32% Similarity=0.717 Sum_probs=13.2
Q ss_pred ecCCCCCcccHHHHHHHHhcCCCCccccC
Q 045417 150 LIPKCDHVFHPECIDAWLESHTTCPVCRS 178 (184)
Q Consensus 150 ~lp~C~H~FH~~CI~~Wl~~~~~CP~CR~ 178 (184)
+.+.|||++-. ..-..||+|..
T Consensus 140 ~C~~CG~i~~~-------~~p~~CP~Cg~ 161 (170)
T 3pwf_A 140 ICPICGYTAVD-------EAPEYCPVCGA 161 (170)
T ss_dssp ECTTTCCEEES-------CCCSBCTTTCC
T ss_pred EeCCCCCeeCC-------CCCCCCCCCCC
Confidence 34568887641 22237999965
Done!