Query 045419
Match_columns 70
No_of_seqs 105 out of 247
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 13:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 99.4 7.9E-14 1.7E-18 100.2 1.0 65 3-69 277-341 (351)
2 PF15264 TSSC4: Tumour suppres 66.5 4.8 0.00011 26.7 1.9 33 13-47 61-93 (115)
3 smart00546 CUE Domain that may 56.4 6.3 0.00014 20.9 0.9 33 5-44 6-40 (43)
4 PF02845 CUE: CUE domain; Int 53.8 7.6 0.00016 20.6 1.0 35 5-46 5-41 (42)
5 COG4957 Predicted transcriptio 45.2 4.2 9.2E-05 28.4 -1.1 8 40-47 74-81 (148)
6 PF08206 OB_RNB: Ribonuclease 39.0 5.4 0.00012 22.7 -1.2 19 47-67 19-37 (58)
7 PF14771 DUF4476: Domain of un 36.2 7.3 0.00016 23.8 -0.9 17 4-20 58-74 (95)
8 PF00042 Globin: Globin plant 34.8 18 0.0004 21.4 0.7 37 8-47 34-74 (110)
9 cd01040 globin Globins are hem 27.7 38 0.00082 20.5 1.3 57 8-68 37-94 (140)
10 PF12434 Malate_DH: Malate deh 26.8 42 0.00092 17.4 1.1 11 32-42 14-24 (28)
11 COG0320 LipA Lipoate synthase 26.5 23 0.0005 27.3 0.1 21 3-23 201-221 (306)
12 PF04988 AKAP95: A-kinase anch 25.9 17 0.00037 25.8 -0.6 23 36-58 85-107 (165)
13 PF10566 Glyco_hydro_97: Glyco 25.7 40 0.00086 25.2 1.3 20 7-26 163-182 (273)
14 PF03254 XG_FTase: Xyloglucan 22.8 94 0.002 25.3 2.9 61 7-67 369-439 (476)
15 COG4699 Uncharacterized protei 22.8 23 0.00049 24.0 -0.4 19 6-24 45-63 (120)
16 PF02257 RFX_DNA_binding: RFX 21.0 57 0.0012 20.5 1.1 13 7-19 53-65 (85)
17 KOG4220 Muscarinic acetylcholi 21.0 29 0.00064 28.4 -0.2 42 14-57 85-128 (503)
18 PF04659 Arch_fla_DE: Archaeal 20.3 65 0.0014 20.7 1.3 15 32-46 33-47 (99)
19 PF07522 DRMBL: DNA repair met 20.1 89 0.0019 19.4 1.9 27 29-55 80-106 (110)
20 PF08302 tRNA_lig_CPD: Fungal 20.0 63 0.0014 23.6 1.3 34 5-45 10-44 (257)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.38 E-value=7.9e-14 Score=100.18 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=44.7
Q ss_pred cchhhhHHhccCceecCCCCCccccccccchhhHHHHHHHHhhhccceeeecCCCcHHHhhhhhccc
Q 045419 3 RPVVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHLML 69 (70)
Q Consensus 3 ~~m~~L~~~fPn~~tK~~L~~~~el~~f~~~ss~~aAlDy~V~~~SDvFvpt~~GNma~~v~GhR~y 69 (70)
+.|++|++.||++++|+.+.+.+|+++|.+ .++|+||++||+.||+||.|....|...|.++|.|
T Consensus 277 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~ 341 (351)
T PF10250_consen 277 RRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHY 341 (351)
T ss_dssp ------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCc
Confidence 468999999999999999999999999976 99999999999999999999977799999999986
No 2
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=66.45 E-value=4.8 Score=26.69 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.9
Q ss_pred cCceecCCCCCccccccccchhhHHHHHHHHhhhc
Q 045419 13 SSATKQGKLASVEELEPFVNHASQMAALDYIVSIE 47 (70)
Q Consensus 13 Pn~~tK~~L~~~~el~~f~~~ss~~aAlDy~V~~~ 47 (70)
|.=+||.+|....| ....++|+.||++|+=.+.
T Consensus 61 P~KwTkYSL~dv~e--D~sd~sN~~aAl~FL~~l~ 93 (115)
T PF15264_consen 61 PEKWTKYSLDDVSE--DMSDQSNRAAALAFLRELR 93 (115)
T ss_pred cccceeeecCCCcc--ccccchhHHHHHHHHHHHH
Confidence 56689999977666 4568999999999996543
No 3
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=56.37 E-value=6.3 Score=20.92 Aligned_cols=33 Identities=9% Similarity=0.195 Sum_probs=19.3
Q ss_pred hhhhHHhccCceecCCCCCccccccc-c-chhhHHHHHHHHh
Q 045419 5 VVSTLRNYSSATKQGKLASVEELEPF-V-NHASQMAALDYIV 44 (70)
Q Consensus 5 m~~L~~~fPn~~tK~~L~~~~el~~f-~-~~ss~~aAlDy~V 44 (70)
++-|+++||++-. +..+.. . +.++..+|+|-+.
T Consensus 6 v~~L~~mFP~l~~-------~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 6 LHDLKDMFPNLDE-------EVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred HHHHHHHCCCCCH-------HHHHHHHHHcCCCHHHHHHHHH
Confidence 5779999999743 222222 1 3445667776543
No 4
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=53.78 E-value=7.6 Score=20.60 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=23.3
Q ss_pred hhhhHHhccCceecCCCCCccccccc--cchhhHHHHHHHHhhh
Q 045419 5 VVSTLRNYSSATKQGKLASVEELEPF--VNHASQMAALDYIVSI 46 (70)
Q Consensus 5 m~~L~~~fPn~~tK~~L~~~~el~~f--~~~ss~~aAlDy~V~~ 46 (70)
+.-|+++||++- .+.++.- .+.++..+|+|.+.+.
T Consensus 5 v~~L~~mFP~~~-------~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 5 VQQLQEMFPDLD-------REVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHSSSS--------HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHCCCCC-------HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 567999999973 3444443 2455788888887653
No 5
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=45.15 E-value=4.2 Score=28.37 Aligned_cols=8 Identities=50% Similarity=0.991 Sum_probs=7.0
Q ss_pred HHHHhhhc
Q 045419 40 LDYIVSIE 47 (70)
Q Consensus 40 lDy~V~~~ 47 (70)
-|||||+|
T Consensus 74 pD~IicLE 81 (148)
T COG4957 74 PDYIICLE 81 (148)
T ss_pred CCeEEEec
Confidence 49999998
No 6
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=38.96 E-value=5.4 Score=22.66 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=12.2
Q ss_pred ccceeeecCCCcHHHhhhhhc
Q 045419 47 ESDVFIPSYSGNMARAVEVHL 67 (70)
Q Consensus 47 ~SDvFvpt~~GNma~~v~GhR 67 (70)
.-||||| ..||.+++-|.+
T Consensus 19 ~~DifIp--~~~l~~A~~gD~ 37 (58)
T PF08206_consen 19 GEDIFIP--PRNLNGAMDGDK 37 (58)
T ss_dssp TEEEEE---HHHHTTS-TT-E
T ss_pred CCCEEEC--HHHHCCCCCCCE
Confidence 5799999 567777777765
No 7
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=36.19 E-value=7.3 Score=23.77 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=13.7
Q ss_pred chhhhHHhccCceecCC
Q 045419 4 PVVSTLRNYSSATKQGK 20 (70)
Q Consensus 4 ~m~~L~~~fPn~~tK~~ 20 (70)
+|+.++.++|++++++.
T Consensus 58 kl~~lk~l~p~i~D~~n 74 (95)
T PF14771_consen 58 KLKALKLLYPYIVDPQN 74 (95)
T ss_pred HHHHHHHHhhhccCHHH
Confidence 57788889999988863
No 8
>PF00042 Globin: Globin plant globin signature erythrocruorin family signature alpha hemoglobin signature myoglobin signature thalassemia.; InterPro: IPR000971 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry covers most of the globin family of proteins, but it omits some bacterial globins and the protoglobins. More information about these proteins can be found at Protein of the Month: Haemoglobin [].; GO: 0005506 iron ion binding, 0020037 heme binding; PDB: 2WTH_A 2WTG_A 3A59_G 3FS4_C 3CY5_C 3D1A_B 2RI4_J 3EU1_B 1JEB_A 2Z6N_B ....
Probab=34.77 E-value=18 Score=21.42 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=23.5
Q ss_pred hHHhccCceecCCCCCcccc---ccccchh-hHHHHHHHHhhhc
Q 045419 8 TLRNYSSATKQGKLASVEEL---EPFVNHA-SQMAALDYIVSIE 47 (70)
Q Consensus 8 L~~~fPn~~tK~~L~~~~el---~~f~~~s-s~~aAlDy~V~~~ 47 (70)
++.+||++.. ..+.+++ ..|..|+ ..+.+||-+|..-
T Consensus 34 ~~~~F~~~~~---~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~l 74 (110)
T PF00042_consen 34 YKKLFPKFKD---IVPLEELKNNPEFKAHAQRVMEALDEAVDNL 74 (110)
T ss_dssp GGGGGTTGTT---TSSHHHHTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhcccccc---cchHHHHhccchHHHHHHHHHHHHHHHHHcc
Confidence 5677876621 1123332 3567787 4889999999876
No 9
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=27.71 E-value=38 Score=20.52 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=33.2
Q ss_pred hHHhccCceecCCCCCccccccccchhh-HHHHHHHHhhhccceeeecCCCcHHHhhhhhcc
Q 045419 8 TLRNYSSATKQGKLASVEELEPFVNHAS-QMAALDYIVSIESDVFIPSYSGNMARAVEVHLM 68 (70)
Q Consensus 8 L~~~fPn~~tK~~L~~~~el~~f~~~ss-~~aAlDy~V~~~SDvFvpt~~GNma~~v~GhR~ 68 (70)
++.+||.+..... .-..-..|..|+. ...+||-+|..-.|-- ...+.+.++-.-|+.
T Consensus 37 ~~~~F~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~--~l~~~l~~lg~~H~~ 94 (140)
T cd01040 37 TRALFSRFGGLSA--ALKGSPKFKAHGKRVLNALDEAIKNLDDLE--ALKALLAKLGRKHAK 94 (140)
T ss_pred HHHHhHHhCCchH--hHccCHHHHHHHHHHHHHHHHHHHhccChH--HHHHHHHHHHHHHHH
Confidence 4667777655544 4444456677774 8899999998654431 112344444444443
No 10
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=26.77 E-value=42 Score=17.42 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=8.2
Q ss_pred chhhHHHHHHH
Q 045419 32 NHASQMAALDY 42 (70)
Q Consensus 32 ~~ss~~aAlDy 42 (70)
.-..+.|||+|
T Consensus 14 r~~lR~AALeY 24 (28)
T PF12434_consen 14 RAQLRQAALEY 24 (28)
T ss_pred HHHHHHHHHHh
Confidence 34468899998
No 11
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=26.52 E-value=23 Score=27.33 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=17.2
Q ss_pred cchhhhHHhccCceecCCCCC
Q 045419 3 RPVVSTLRNYSSATKQGKLAS 23 (70)
Q Consensus 3 ~~m~~L~~~fPn~~tK~~L~~ 23 (70)
+-|+-.|++.|.++||+.|+-
T Consensus 201 ~~L~~~k~~~P~i~TKSgiMl 221 (306)
T COG0320 201 SLLERAKELGPDIPTKSGLMV 221 (306)
T ss_pred HHHHHHHHhCCCcccccceee
Confidence 346677899999999999973
No 12
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=25.93 E-value=17 Score=25.76 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhccceeeecCCCc
Q 045419 36 QMAALDYIVSIESDVFIPSYSGN 58 (70)
Q Consensus 36 ~~aAlDy~V~~~SDvFvpt~~GN 58 (70)
.|.=+--.=|...|+|||+..+.
T Consensus 85 fm~KVEa~hCsACd~~IP~~~~~ 107 (165)
T PF04988_consen 85 FMKKVEAAHCSACDVFIPMQHSS 107 (165)
T ss_pred HHHHHHHhhhhHhhhhccCcHHH
Confidence 44444445799999999997663
No 13
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=25.68 E-value=40 Score=25.20 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=14.0
Q ss_pred hhHHhccCceecCCCCCccc
Q 045419 7 STLRNYSSATKQGKLASVEE 26 (70)
Q Consensus 7 ~L~~~fPn~~tK~~L~~~~e 26 (70)
-+.+.|||+.|.|.+.-.|.
T Consensus 163 G~~RTyPN~mT~EgVrG~E~ 182 (273)
T PF10566_consen 163 GLRRTYPNLMTREGVRGQEY 182 (273)
T ss_dssp THHHCSTTEEEE--S--GGG
T ss_pred cccccCccHHHHHHhhhhhh
Confidence 47899999999999977776
No 14
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=22.84 E-value=94 Score=25.27 Aligned_cols=61 Identities=21% Similarity=0.142 Sum_probs=42.5
Q ss_pred hhHHhccCceecC------CCCCccccccccchh-hHHHHHHHHhhhccceeeecC---CCcHHHhhhhhc
Q 045419 7 STLRNYSSATKQG------KLASVEELEPFVNHA-SQMAALDYIVSIESDVFIPSY---SGNMARAVEVHL 67 (70)
Q Consensus 7 ~L~~~fPn~~tK~------~L~~~~el~~f~~~s-s~~aAlDy~V~~~SDvFvpt~---~GNma~~v~GhR 67 (70)
-|+++|-.--|.. -=-+.||.+.|.+.. ++.|-.|-+.-+.||+.|.|. .|-.|..+.|-|
T Consensus 369 ~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVTS~~STFGYVAqgLgGl~ 439 (476)
T PF03254_consen 369 KLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDVLVTSGWSTFGYVAQGLGGLR 439 (476)
T ss_pred HHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccceEecCCCCchhHHHhhcCCC
Confidence 3566665544332 114678888886554 688999999999999999988 456666666654
No 15
>COG4699 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.82 E-value=23 Score=24.01 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=16.0
Q ss_pred hhhHHhccCceecCCCCCc
Q 045419 6 VSTLRNYSSATKQGKLASV 24 (70)
Q Consensus 6 ~~L~~~fPn~~tK~~L~~~ 24 (70)
.-++..|||.+||..++++
T Consensus 45 ~~l~~~~p~y~skk~ll~a 63 (120)
T COG4699 45 FRLKVNFPNYVSKKDLLTA 63 (120)
T ss_pred HHHHHhCcccccchhHHHH
Confidence 3578899999999999874
No 16
>PF02257 RFX_DNA_binding: RFX DNA-binding domain; InterPro: IPR003150 RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DP7_P 2KW3_A.
Probab=21.00 E-value=57 Score=20.48 Aligned_cols=13 Identities=0% Similarity=0.010 Sum_probs=10.0
Q ss_pred hhHHhccCceecC
Q 045419 7 STLRNYSSATKQG 19 (70)
Q Consensus 7 ~L~~~fPn~~tK~ 19 (70)
-++..||++.++.
T Consensus 53 lir~vFP~l~~RR 65 (85)
T PF02257_consen 53 LIRQVFPNLKTRR 65 (85)
T ss_dssp HHHHHSTT-EEEE
T ss_pred HHHHHcCCCcccc
Confidence 4688999999885
No 17
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=20.96 E-value=29 Score=28.38 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=28.1
Q ss_pred CceecCCCCCccccccccchhhHHHHHHHHhhhcc--ceeeecCCC
Q 045419 14 SATKQGKLASVEELEPFVNHASQMAALDYIVSIES--DVFIPSYSG 57 (70)
Q Consensus 14 n~~tK~~L~~~~el~~f~~~ss~~aAlDy~V~~~S--DvFvpt~~G 57 (70)
|++|-..|+...-|.+. --..|-||||++|-.| .++|-++|-
T Consensus 85 nl~t~Y~lmg~W~LG~~--~CdlWLalDYvaSNASVmNLLiISFDR 128 (503)
T KOG4220|consen 85 NLYTTYTLMGYWPLGPL--VCDLWLALDYVASNASVMNLLIISFDR 128 (503)
T ss_pred hHHHHHHHHcccccchH--HHHHHHHHHHHhhhhhhhhhheeeeec
Confidence 34444556666666654 4468999999999887 456666553
No 18
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=20.31 E-value=65 Score=20.71 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=13.2
Q ss_pred chhhHHHHHHHHhhh
Q 045419 32 NHASQMAALDYIVSI 46 (70)
Q Consensus 32 ~~ss~~aAlDy~V~~ 46 (70)
++.+...|||||..+
T Consensus 33 G~~~~~~~L~YY~~i 47 (99)
T PF04659_consen 33 GHNNAADALDYYESI 47 (99)
T ss_pred ccccHHHHHHHHHHc
Confidence 778899999999875
No 19
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=20.09 E-value=89 Score=19.38 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=24.6
Q ss_pred cccchhhHHHHHHHHhhhccceeeecC
Q 045419 29 PFVNHASQMAALDYIVSIESDVFIPSY 55 (70)
Q Consensus 29 ~f~~~ss~~aAlDy~V~~~SDvFvpt~ 55 (70)
|+..|||...=.||+-.+..+-.|||-
T Consensus 80 PYSeHSSf~EL~~Fv~~l~P~~IiPtV 106 (110)
T PF07522_consen 80 PYSEHSSFSELKEFVSFLKPKKIIPTV 106 (110)
T ss_pred ecccCCCHHHHHHHHHhcCCcEEEccc
Confidence 567999999999999999999999985
No 20
>PF08302 tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase domain; InterPro: IPR015965 This entry represents a phosphodiesterase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=20.01 E-value=63 Score=23.62 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=23.7
Q ss_pred hhhhHHhccCceecCCCCCccccccccchhhHHHHHH-HHhh
Q 045419 5 VVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALD-YIVS 45 (70)
Q Consensus 5 m~~L~~~fPn~~tK~~L~~~~el~~f~~~ss~~aAlD-y~V~ 45 (70)
+.-|.+.||+|+. .+=|++|+.. ....||+ |-+.
T Consensus 10 i~~L~~~yP~Lv~--~~Ps~e~id~-----A~~~Al~~Ykp~ 44 (257)
T PF08302_consen 10 INELHKKYPNLVP--EVPSDEEIDE-----AFQKALNEYKPD 44 (257)
T ss_pred HHHHHHhCchhcC--CCCCHHHHHH-----HHHHHHhhCCCc
Confidence 4678999999998 4557776643 3456676 7653
Done!