Query 045419
Match_columns 70
No_of_seqs 105 out of 247
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 23:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 94.9 0.023 7.8E-07 41.5 3.9 59 5-67 318-376 (408)
2 3zy2_A Putative GDP-fucose pro 92.1 0.095 3.2E-06 39.7 2.9 31 37-67 314-344 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 73.4 6.6 0.00022 30.3 5.5 61 6-66 353-416 (526)
4 1p3q_Q VPS9P, vacuolar protein 69.5 1.6 5.4E-05 24.8 0.9 13 4-16 15-27 (54)
5 1wgl_A TOLL-interacting protei 55.8 4.1 0.00014 23.0 1.0 44 4-54 12-57 (59)
6 2dhy_A CUE domain-containing p 55.6 4.1 0.00014 23.7 1.0 37 5-48 22-60 (67)
7 1otr_A Protein CUE2; protein-p 37.1 12 0.00042 20.4 1.0 37 5-48 8-46 (49)
8 3l9k_W Dynein intermediate cha 29.8 4.8 0.00017 21.3 -1.4 31 18-52 6-38 (38)
9 4dny_A Metalloprotease STCE; m 24.7 20 0.0007 23.3 0.6 47 13-61 20-66 (126)
10 2igp_A Retinoblastoma-associat 21.1 25 0.00085 22.1 0.4 31 12-45 84-114 (120)
11 1dp7_P MHC class II transcript 20.1 38 0.0013 19.9 1.1 13 7-19 46-58 (76)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=94.95 E-value=0.023 Score=41.53 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=43.2
Q ss_pred hhhhHHhccCceecCCCCCccccccccchhhHHHHHHHHhhhccceeeecCCCcHHHhhhhhc
Q 045419 5 VVSTLRNYSSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVHL 67 (70)
Q Consensus 5 m~~L~~~fPn~~tK~~L~~~~el~~f~~~ss~~aAlDy~V~~~SDvFvpt~~GNma~~v~GhR 67 (70)
+..|++.+|.++.-.. ..+++..+ .....|.||-.||..||+||-|....|...|.=.|
T Consensus 318 ~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR 376 (408)
T 4ap5_A 318 YEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEER 376 (408)
T ss_dssp HHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHH
Confidence 4567888887764332 33444444 34567999999999999999999998888876655
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=92.06 E-value=0.095 Score=39.72 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=27.1
Q ss_pred HHHHHHHhhhccceeeecCCCcHHHhhhhhc
Q 045419 37 MAALDYIVSIESDVFIPSYSGNMARAVEVHL 67 (70)
Q Consensus 37 ~aAlDy~V~~~SDvFvpt~~GNma~~v~GhR 67 (70)
.|+||-+||.+||+||.+....|...|.=.|
T Consensus 314 ~a~ID~~I~~~A~~FIGN~~SSFSa~I~rER 344 (362)
T 3zy2_A 314 DMYTSLAIMGRADLFVGNCVSTFSHIVKRER 344 (362)
T ss_dssp CHHHHHHHHHHSSEEEECTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCEeecCccccccHHHHHHH
Confidence 7999999999999999999888887766554
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=73.40 E-value=6.6 Score=30.30 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=37.8
Q ss_pred hhhHHhccCc--eecCCC-CCccccccccchhhHHHHHHHHhhhccceeeecCCCcHHHhhhhh
Q 045419 6 VSTLRNYSSA--TKQGKL-ASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMARAVEVH 66 (70)
Q Consensus 6 ~~L~~~fPn~--~tK~~L-~~~~el~~f~~~ss~~aAlDy~V~~~SDvFvpt~~GNma~~v~Gh 66 (70)
+-+++.||+. ++-... .+...-......+-..+-+|.++.+++|+||-|.+.|+.+++...
T Consensus 353 ~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l 416 (526)
T 2de0_X 353 KEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEI 416 (526)
T ss_dssp HHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHH
T ss_pred HHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHH
Confidence 4466778885 222111 111111122222336688999999999999999999888876543
No 4
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=69.51 E-value=1.6 Score=24.82 Aligned_cols=13 Identities=0% Similarity=0.046 Sum_probs=10.7
Q ss_pred chhhhHHhccCce
Q 045419 4 PVVSTLRNYSSAT 16 (70)
Q Consensus 4 ~m~~L~~~fPn~~ 16 (70)
.++.|+.|||++-
T Consensus 15 ~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 15 TLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHSTTSC
T ss_pred HHHHHHHHcccCC
Confidence 3678999999984
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=55.85 E-value=4.1 Score=23.03 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=30.1
Q ss_pred chhhhHHhccCceecCCCCCccccccc--cchhhHHHHHHHHhhhccceeeec
Q 045419 4 PVVSTLRNYSSATKQGKLASVEELEPF--VNHASQMAALDYIVSIESDVFIPS 54 (70)
Q Consensus 4 ~m~~L~~~fPn~~tK~~L~~~~el~~f--~~~ss~~aAlDy~V~~~SDvFvpt 54 (70)
.++-|++|||++- .+-++.. .+.....+|||-......+=|=|+
T Consensus 12 ~l~~L~emFP~ld-------~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 12 DLKAIQDMFPNMD-------QEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHCSSSC-------HHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHCCCCC-------HHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 3678999999973 2333333 234568999999888877766554
No 6
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.65 E-value=4.1 Score=23.73 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=23.7
Q ss_pred hhhhHHhccCceecCCCCCccccccc--cchhhHHHHHHHHhhhcc
Q 045419 5 VVSTLRNYSSATKQGKLASVEELEPF--VNHASQMAALDYIVSIES 48 (70)
Q Consensus 5 m~~L~~~fPn~~tK~~L~~~~el~~f--~~~ss~~aAlDy~V~~~S 48 (70)
++-|++|||++-. +-++.. .+..+..+|||-+-.+..
T Consensus 22 v~~L~~MFP~lD~-------~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 22 MDDFKTMFPNMDY-------DIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHCSSSCH-------HHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCH-------HHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 6789999999743 222332 244568888887766543
No 7
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=37.11 E-value=12 Score=20.45 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=22.8
Q ss_pred hhhhHHhccCceecCCCCCcccccccc--chhhHHHHHHHHhhhcc
Q 045419 5 VVSTLRNYSSATKQGKLASVEELEPFV--NHASQMAALDYIVSIES 48 (70)
Q Consensus 5 m~~L~~~fPn~~tK~~L~~~~el~~f~--~~ss~~aAlDy~V~~~S 48 (70)
++-|.+|||++ +.++.+.-. ..+...+|+|-++...+
T Consensus 8 v~~L~EMFP~~-------~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 8 LSILMDMFPAI-------SKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHCSSS-------CHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHCCCC-------CHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 46789999986 334444332 34457777777766543
No 8
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=29.84 E-value=4.8 Score=21.35 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=21.3
Q ss_pred cCCCCCccccccccchhh--HHHHHHHHhhhccceee
Q 045419 18 QGKLASVEELEPFVNHAS--QMAALDYIVSIESDVFI 52 (70)
Q Consensus 18 K~~L~~~~el~~f~~~ss--~~aAlDy~V~~~SDvFv 52 (70)
|..+++.++...|..+|+ ..-||| -.-|+|+
T Consensus 6 k~~I~~S~~F~~F~~rsskviERAL~----e~yDi~~ 38 (38)
T 3l9k_W 6 KQMIILSENFQRFVVRAGRVIERALS----ENVDIYT 38 (38)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHH----HSSCTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHc----ccccccC
Confidence 456677888888888887 456664 5566653
No 9
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=24.71 E-value=20 Score=23.30 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=34.0
Q ss_pred cCceecCCCCCccccccccchhhHHHHHHHHhhhccceeeecCCCcHHH
Q 045419 13 SSATKQGKLASVEELEPFVNHASQMAALDYIVSIESDVFIPSYSGNMAR 61 (70)
Q Consensus 13 Pn~~tK~~L~~~~el~~f~~~ss~~aAlDy~V~~~SDvFvpt~~GNma~ 61 (70)
|.-.|+..|.+..||..++.-+. ++|==++.-+.+|+|-+.||+-.+
T Consensus 20 ~~~~~~~~i~s~a~l~~~sd~sg--~~l~~~L~~~d~V~v~t~DG~W~r 66 (126)
T 4dny_A 20 PHNGTKKIINTVAEVNKLSDASG--SSIHSHLTNNALVEIHTANGRWVR 66 (126)
T ss_dssp CSSSCEEEECSHHHHHGGGCTTC--HHHHHHHTSCSEEEEEEETTBCCS
T ss_pred cCCCceeeEechhhhhhccCCch--HHHHHHhccCCEEEEEecCCceEc
Confidence 56667888889999999853322 222223889999999999997654
No 10
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=21.15 E-value=25 Score=22.07 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=21.7
Q ss_pred ccCceecCCCCCccccccccchhhHHHHHHHHhh
Q 045419 12 YSSATKQGKLASVEELEPFVNHASQMAALDYIVS 45 (70)
Q Consensus 12 fPn~~tK~~L~~~~el~~f~~~ss~~aAlDy~V~ 45 (70)
||-..+|+.|.+..-- .+-.+.++||+++|=
T Consensus 84 YP~~isKS~L~a~g~p---HsWp~~L~~L~WLve 114 (120)
T 2igp_A 84 YPFALSKSSMYTVGAP---HTWPHIVAALVWLID 114 (120)
T ss_dssp CCSCCCHHHHHTTTST---TTHHHHHHHHHHHHH
T ss_pred CCceeCHHHhcCCCCC---ccHHHHHHHHHHHHH
Confidence 7888888887665431 123478999999874
No 11
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=20.06 E-value=38 Score=19.88 Aligned_cols=13 Identities=0% Similarity=-0.100 Sum_probs=10.9
Q ss_pred hhHHhccCceecC
Q 045419 7 STLRNYSSATKQG 19 (70)
Q Consensus 7 ~L~~~fPn~~tK~ 19 (70)
-++..||++.++.
T Consensus 46 ~ir~~FP~l~trR 58 (76)
T 1dp7_P 46 LIRSVFMGLRTRR 58 (76)
T ss_dssp HHHHHSTTCEEEE
T ss_pred HHHHHCCCceeee
Confidence 4789999998875
Done!