BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045424
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K8H|A Chain A, Solution Structure Of Sumo From Trypanosoma Brucei
Length = 110
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 16 LINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
L+ + + + DG + FF+ +K+L+ YC+ + S FL +G D +KT ++L
Sbjct: 26 LVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEEL 85
Query: 76 GLKDGDEIDAMYHAFGG 92
G++D D IDAM GG
Sbjct: 86 GMEDDDVIDAMVEQTGG 102
>pdb|2IY1|B Chain B, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|D Chain D, Senp1 (Mutant) Full Length Sumo1
Length = 83
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62
Query: 77 LKDGDEIDAMYHAFGGGHD 95
+++ D I+ +Y GGH
Sbjct: 63 MEEEDVIE-VYQEQTGGHS 80
>pdb|2IY0|B Chain B, Senp1 (Mutant) Sumo1 Rangap
Length = 82
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62
Query: 77 LKDGDEIDAMYHAFGGGHD 95
+++ D I+ +Y GGH
Sbjct: 63 MEEEDVIE-VYQEQTGGHS 80
>pdb|2IO1|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
pdb|2IO1|D Chain D, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
pdb|2IO1|F Chain F, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
Length = 94
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 67
Query: 77 LKDGDEIDAMYHAFGG 92
++D D ID GG
Sbjct: 68 MEDEDTIDVFQQQTGG 83
>pdb|2IO3|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1- Sumo-2
Length = 81
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65
Query: 77 LKDGDEIDAMYHAFGG 92
++D D ID GG
Sbjct: 66 MEDEDTIDVFQQQTGG 81
>pdb|2IO0|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Presumo-2
Length = 91
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65
Query: 77 LKDGDEIDAMYHAFGG 92
++D D ID GG
Sbjct: 66 MEDEDTIDVFQQQTGG 81
>pdb|2CKH|B Chain B, Senp1-sumo2 Complex
Length = 79
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 4 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 63
Query: 77 LKDGDEIDAMYHAFGG 92
++D D ID GG
Sbjct: 64 MEDEDTIDVFQQQTGG 79
>pdb|1A5R|A Chain A, Structure Determination Of The Small Ubiquitin-Related
Modifier Sumo-1, Nmr, 10 Structures
Length = 103
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 24 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 83
Query: 77 LKDGDEIDAMYHAFGGGH 94
+++ D I+ +Y GGH
Sbjct: 84 MEEEDVIE-VYQEQTGGH 100
>pdb|3UIN|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
pdb|3UIO|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 5 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 64
Query: 77 LKDGDEIDAMYHAFGG 92
++D D ID GG
Sbjct: 65 MEDEDTIDVFQQQTGG 80
>pdb|2IYD|B Chain B, Senp1 Covalent Complex With Sumo-2
Length = 81
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 4 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 63
Query: 77 LKDGDEIDAMYHAFGG 92
++D D ID GG
Sbjct: 64 MEDEDTIDVFQQQTGG 79
>pdb|2D07|B Chain B, Crystal Structure Of Sumo-3-Modified Thymine-Dna
Glycosylase
pdb|2RPQ|A Chain A, Solution Structure Of A Sumo-Interacting Motif Of Mbd1-
Containing Chromatin-Associated Factor 1 Bound To
Sumo-3
Length = 93
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 77
Query: 77 LKDGDEIDAMYHAFGG 92
++D D ID GG
Sbjct: 78 MEDEDTIDVFQQQTGG 93
>pdb|2AWT|A Chain A, Solution Structure Of Human Small Ubiquitin-Like
Modifier Protein Isoform 2 (Sumo-2)
Length = 95
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 77
Query: 77 LKDGDEIDAMYHAFGG 92
++D D ID GG
Sbjct: 78 MEDEDTIDVFQQQTGG 93
>pdb|2UYZ|B Chain B, Non-Covalent Complex Between Ubc9 And Sumo1
pdb|2VRR|B Chain B, Structure Of Sumo Modified Ubc9
Length = 79
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 63
Query: 77 LKDGDEIDAMYHAFGG 92
+++ D I+ GG
Sbjct: 64 MEEEDVIEVYQEQTGG 79
>pdb|1Z5S|B Chain B, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2IO2|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
Length = 82
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 7 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 66
Query: 77 LKDGDEIDAMYHAFGG 92
+++ D I+ GG
Sbjct: 67 MEEEDVIEVYQEQTGG 82
>pdb|2BF8|B Chain B, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 77
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 2 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 61
Query: 77 LKDGDEIDAMYHAFGG 92
+++ D I+ GG
Sbjct: 62 MEEEDVIEVYQEQTGG 77
>pdb|1TGZ|B Chain B, Structure Of Human Senp2 In Complex With Sumo-1
pdb|3UIP|B Chain B, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 5 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 64
Query: 77 LKDGDEIDAMYHAFGG 92
+++ D I+ GG
Sbjct: 65 MEEEDVIEVYQEQTGG 80
>pdb|2G4D|B Chain B, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2G4D|D Chain D, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2LAS|A Chain A, Molecular Determinants Of Paralogue-Specific Sumo-Sim
Recognition
Length = 78
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62
Query: 77 LKDGDEIDAMYHAFGG 92
+++ D I+ GG
Sbjct: 63 MEEEDVIEVYQEQTGG 78
>pdb|3KYC|D Chain D, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 97
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81
Query: 77 LKDGDEIDAMYHAFGG 92
+++ D I+ GG
Sbjct: 82 MEEEDVIEVYQEQCGG 97
>pdb|1Y8R|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|F Chain F, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1WYW|B Chain B, Crystal Structure Of Sumo1-Conjugated Thymine Dna
Glycosylase
pdb|2PE6|B Chain B, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
pdb|2ASQ|A Chain A, Solution Structure Of Sumo-1 In Complex With A
Sumo-Binding Motif (Sbm)
Length = 97
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81
Query: 77 LKDGDEIDAMYHAFGG 92
+++ D I+ GG
Sbjct: 82 MEEEDVIEVYQEQTGG 97
>pdb|2KQS|A Chain A, Phosphorylation Of Sumo-Interacting Motif By Ck2
Enhances Daxx Sumo Binding Activity
Length = 99
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 24 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 83
Query: 77 LKDGDEIDAMYHAFGG 92
+++ D I+ GG
Sbjct: 84 MEEEDVIEVYQEQTGG 99
>pdb|1WZ0|A Chain A, Solution Structure Of Human Sumo-2 (Smt3b), A Ubiquitin-
Like Protein
Length = 104
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 84
Query: 77 LKDGDEIDAMYHAFGG 92
++D D ID G
Sbjct: 85 MEDEDTIDVFQQQTSG 100
>pdb|3KYD|D Chain D, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 115
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L YC+ + P S FL G R + T +LG
Sbjct: 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 100
Query: 77 LKDGDEIDAMYHAFG 91
+++ D I+ G
Sbjct: 101 MEEEDVIEVYQEQCG 115
>pdb|1WM3|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 72
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 61
Query: 77 LKDGDEIDA 85
++D D ID
Sbjct: 62 MEDEDTIDV 70
>pdb|1WM2|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 78
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ YCE + + F +G + + T QL
Sbjct: 7 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 66
Query: 77 LKDGDEIDA 85
++D D ID
Sbjct: 67 MEDEDTIDV 75
>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s
Length = 87
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QDG F+ + +L+ Y E + + F +G + + T QL
Sbjct: 4 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYSERQGLSMRQIRFRFDGQPINETDTPAQLE 63
Query: 77 LKDGDEIDAMYHAFGG 92
++D D ID GG
Sbjct: 64 MEDEDTIDVFQQQTGG 79
>pdb|3RZW|C Chain C, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
pdb|3RZW|D Chain D, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
Length = 99
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
I L + QD + F+ +K+L Y + + P S FL G R + T +LG
Sbjct: 24 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRIADNHTPKELG 83
Query: 77 LKDGDEIDAMYHAFGG 92
+++ D I+ GG
Sbjct: 84 MEEEDVIEVYQEQTGG 99
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 30 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 87
Query: 76 GLKDGDEIDAMYHAFGGG 93
++D D I+A GGG
Sbjct: 88 DMEDNDIIEAHREQIGGG 105
>pdb|3V7O|A Chain A, Crystal Structure Of The C-Terminal Domain Of Ebola
Virus Vp30 (Strain Reston-89)
pdb|3V7O|B Chain B, Crystal Structure Of The C-Terminal Domain Of Ebola
Virus Vp30 (Strain Reston-89)
Length = 227
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 22 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 79
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 80 DMEDNDIIEAHREQIGG 96
>pdb|3V60|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
Length = 84
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 10 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 67
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 68 DMEDNDIIEAHREQIGG 84
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 24 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 81
Query: 76 GLKDGDEIDAMYHAFGGG 93
++D D I+A GG
Sbjct: 82 DMEDNDIIEAHREQIGGA 99
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain
In Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 86
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 12 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 69
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 70 DMEDNDIIEAHREQIGG 86
>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|D Chain D, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 106
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 32 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 89
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 90 DMEDNDIIEAHREQIGG 106
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 21 IKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKD 79
+K DG FF+ ++RL+ + + + + S FL +G R +T + L ++D
Sbjct: 24 LKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMED 83
Query: 80 GDEIDAMYHAFGG 92
D I+A GG
Sbjct: 84 NDIIEAHREQIGG 96
>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
pdb|3QHT|B Chain B, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
Length = 98
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 24 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 81
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 82 DMEDNDIIEAHREQIGG 98
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 22 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 79
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 80 DMEDNDIIEAHREQIGG 96
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 22 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 79
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 80 DMEDNDIIEAHREQIGG 96
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 22 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 79
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 80 DMEDNDIIEAHREQIGG 96
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 22 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 79
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 80 DMEDNDIIEAHREQIGG 96
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R +T + L
Sbjct: 22 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL 79
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 80 DMEDNDIIEAHREQIGG 96
>pdb|3V62|A Chain A, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
pdb|3V62|D Chain D, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
Length = 84
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + S + FF ++RL+ + + S FL +G R +T + L
Sbjct: 10 INLXV-SDGSSEIFFXIXXTTPLRRLMEAFAXRQGXEMDSLRFLYDGIRIQADQTPEDLD 68
Query: 77 LKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 69 MEDNDIIEAHREQIGG 84
>pdb|2K1F|A Chain A, Sumo-3 From Drosophila Melanogaster (Dsmt3)
Length = 88
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG 76
INL + QD F+ +++L+ YC+ + F +G + + T L
Sbjct: 13 INLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLE 72
Query: 77 LKDGDEIDAMYHAFGG 92
+++GD I+ GG
Sbjct: 73 MEEGDTIEVYQQQTGG 88
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G R + + L
Sbjct: 31 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDL 88
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 89 DMEDNDIIEAHREQIGG 105
>pdb|3TIX|A Chain A, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|C Chain C, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 207
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 17 INLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL 75
INL K DG FF+ ++RL+ + + + + S FL +G +T + L
Sbjct: 58 INL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDL 115
Query: 76 GLKDGDEIDAMYHAFGG 92
++D D I+A GG
Sbjct: 116 DMEDNDIIEAHREQIGG 132
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTAD 73
H ++ + + D RF ++ D K +K E QP + F NGN F Y+ + D
Sbjct: 282 HPVHGTLATVGSDGRFSFWDKDARTK---LKTSEQLDQPISACCFNHNGNIFAYASSYD 337
>pdb|3PSI|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(239-1451)
Length = 1219
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 80 GDEIDAMYHAFGGGHDH 96
D+ID MY FG GHD+
Sbjct: 7 SDKIDEMYDIFGDGHDY 23
>pdb|3PSF|A Chain A, Crystal Structure Of The Spt6 Core Domain From
Saccharomyces Cerevisiae, Form Spt6(236-1259)
Length = 1030
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 80 GDEIDAMYHAFGGGHDH 96
D+ID MY FG GHD+
Sbjct: 10 SDKIDEMYDIFGDGHDY 26
>pdb|3M62|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
Length = 106
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 59 FLINGNRFDYSKTADQLGLKDGDEI 83
+ +G SKT + GLKDGD++
Sbjct: 44 LIYSGKVLQDSKTVSECGLKDGDQV 68
>pdb|3HTX|A Chain A, Crystal Structure Of Small Rna Methyltransferase Hen1
pdb|3HTX|D Chain D, Crystal Structure Of Small Rna Methyltransferase Hen1
Length = 950
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 61 INGNRFDYSKTADQLGLKDGDEI 83
I+ NR A++LGLKDG+++
Sbjct: 247 ISSNRHYLDSIAERLGLKDGNQV 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,886,877
Number of Sequences: 62578
Number of extensions: 104925
Number of successful extensions: 223
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 49
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)