Query 045424
Match_columns 98
No_of_seqs 116 out of 515
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 23:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kyd_D Small ubiquitin-related 100.0 6.1E-33 2.1E-37 183.8 10.2 83 9-91 33-115 (115)
2 2eke_C Ubiquitin-like protein 100.0 5.1E-32 1.7E-36 177.1 11.0 86 6-92 21-106 (106)
3 2io0_B Small ubiquitin-related 100.0 8.6E-32 3E-36 171.6 10.4 82 13-94 2-83 (91)
4 3tix_A Ubiquitin-like protein 100.0 1E-31 3.4E-36 191.3 9.0 87 8-95 49-135 (207)
5 1wz0_A Ubiquitin-like protein 100.0 3.2E-31 1.1E-35 172.6 10.6 83 13-95 21-103 (104)
6 2d07_B Ubiquitin-like protein 100.0 4.1E-31 1.4E-35 168.7 10.1 80 13-92 14-93 (93)
7 2k8h_A Small ubiquitin protein 100.0 3.3E-31 1.1E-35 174.2 8.6 88 9-96 19-106 (110)
8 2io1_B Small ubiquitin-related 100.0 8.2E-31 2.8E-35 167.8 9.8 83 13-95 4-86 (94)
9 2l76_A Nfatc2-interacting prot 100.0 1E-29 3.5E-34 163.0 10.8 76 11-87 16-91 (95)
10 2jxx_A Nfatc2-interacting prot 100.0 8.8E-30 3E-34 164.2 10.3 79 8-86 17-96 (97)
11 3v7o_A Minor nucleoprotein VP3 100.0 9.3E-32 3.2E-36 193.7 0.3 86 8-94 13-98 (227)
12 3pge_A SUMO-modified prolifera 100.0 7.9E-30 2.7E-34 182.4 10.3 86 8-94 21-106 (200)
13 3a4r_A Nfatc2-interacting prot 100.0 3.6E-28 1.2E-32 150.8 10.8 75 12-86 3-78 (79)
14 1wm3_A Ubiquitin-like protein 100.0 2.2E-28 7.5E-33 149.1 9.3 72 16-87 1-72 (72)
15 3uf8_A Ubiquitin-like protein 99.9 2.2E-27 7.4E-32 170.0 9.9 86 8-94 13-98 (209)
16 4da1_A Protein phosphatase 1K, 99.9 8.3E-28 2.8E-32 184.0 0.0 88 7-95 21-108 (389)
17 3ix6_A TS, tsase, thymidylate 99.9 1.2E-27 4E-32 183.3 0.0 85 8-93 13-97 (360)
18 3goe_A DNA repair protein RAD6 99.9 3.8E-23 1.3E-27 128.2 9.7 74 15-88 8-82 (82)
19 1wyw_B Ubiquitin-like protein 99.9 2.9E-21 9.9E-26 123.0 10.1 83 10-92 15-97 (97)
20 2uyz_B Small ubiquitin-related 99.9 3.8E-21 1.3E-25 117.3 9.7 78 15-92 2-79 (79)
21 4hcn_B Polyubiquitin, ubiquiti 99.7 1.9E-16 6.5E-21 100.6 9.4 85 8-92 14-98 (98)
22 3dbh_I NEDD8; cell cycle, acti 99.7 5.3E-16 1.8E-20 95.6 11.1 81 12-92 8-88 (88)
23 3n3k_B Ubiquitin; hydrolase, p 99.7 4.4E-16 1.5E-20 95.3 8.8 80 15-94 2-81 (85)
24 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.6E-15 5.3E-20 93.5 10.5 82 14-95 5-86 (87)
25 3mtn_B UBA80, ubcep1, ubiquiti 99.6 2E-15 6.8E-20 92.2 10.4 81 15-95 2-82 (85)
26 1ndd_A NEDD8, protein (ubiquit 99.6 2.6E-15 8.9E-20 89.6 9.7 76 17-92 1-76 (76)
27 3a9j_A Ubiquitin; protein comp 99.6 3.8E-15 1.3E-19 88.9 9.9 76 17-92 1-76 (76)
28 3phx_B Ubiquitin-like protein 99.6 7.8E-15 2.7E-19 89.0 10.8 77 15-91 3-79 (79)
29 2hj8_A Interferon-induced 17 k 99.6 4.8E-15 1.7E-19 92.3 8.9 82 15-96 3-84 (88)
30 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 7.7E-15 2.6E-19 92.0 9.8 79 17-95 2-80 (96)
31 3vdz_A Ubiquitin-40S ribosomal 99.6 1.2E-14 4E-19 94.4 10.7 79 14-92 33-111 (111)
32 1sif_A Ubiquitin; hydrophobic 99.6 8.6E-15 2.9E-19 91.2 9.1 79 16-94 9-87 (88)
33 3v6c_B Ubiquitin; structural g 99.6 4.3E-14 1.5E-18 88.2 11.1 80 10-89 11-90 (91)
34 2ojr_A Ubiquitin; lanthide-bin 99.6 3.2E-14 1.1E-18 92.2 10.5 79 14-92 33-111 (111)
35 2l7r_A Ubiquitin-like protein 99.6 1.7E-14 5.8E-19 90.9 9.0 80 11-92 14-93 (93)
36 4fbj_B NEDD8; effector-HOST ta 99.6 2.1E-14 7.2E-19 89.4 9.2 78 17-94 1-78 (88)
37 1wy8_A NP95-like ring finger p 99.6 6.5E-14 2.2E-18 86.6 11.2 82 14-95 5-88 (89)
38 1j8c_A Ubiquitin-like protein 99.6 7.3E-14 2.5E-18 92.7 11.7 81 13-94 29-109 (125)
39 1wx8_A Riken cDNA 4931431F19; 99.5 6E-14 2.1E-18 88.2 10.3 81 13-94 14-94 (96)
40 1wx7_A Ubiquilin 3; ubiquitin- 99.5 9.9E-14 3.4E-18 89.0 11.2 84 10-94 11-94 (106)
41 1ttn_A DC-UBP, dendritic cell- 99.5 7.2E-14 2.4E-18 89.9 10.1 84 10-93 17-100 (106)
42 1yx5_B Ubiquitin; proteasome, 99.5 7.2E-14 2.5E-18 88.2 10.0 77 17-93 1-77 (98)
43 4dwf_A HLA-B-associated transc 99.5 2.4E-13 8.1E-18 84.3 10.6 81 13-94 2-82 (90)
44 3rt3_B Ubiquitin-like protein 99.5 2.3E-13 8E-18 92.1 11.0 80 14-93 79-158 (159)
45 3b08_A Polyubiquitin-C, ubiqui 99.5 5.2E-13 1.8E-17 88.8 11.1 78 15-92 75-152 (152)
46 1yqb_A Ubiquilin 3; structural 99.5 9.6E-13 3.3E-17 84.0 11.0 83 10-93 16-98 (100)
47 3plu_A Ubiquitin-like modifier 99.5 8.2E-13 2.8E-17 84.2 10.4 75 13-87 18-92 (93)
48 2kan_A Uncharacterized protein 99.5 1E-12 3.5E-17 83.0 10.5 80 14-94 13-93 (94)
49 2dzi_A Ubiquitin-like protein 99.4 1.1E-12 3.6E-17 79.4 9.5 76 14-89 5-80 (81)
50 2bwf_A Ubiquitin-like protein 99.4 1.4E-12 4.8E-17 78.1 9.7 72 17-89 5-76 (77)
51 2faz_A Ubiquitin-like containi 99.4 1.4E-12 4.7E-17 78.7 9.6 74 16-89 2-77 (78)
52 1we6_A Splicing factor, putati 99.4 1.4E-12 4.7E-17 84.3 9.2 82 14-95 25-110 (111)
53 3l0w_B Monoubiquitinated proli 99.4 1.5E-12 5.3E-17 90.1 10.0 78 17-94 1-78 (169)
54 1wgd_A Homocysteine-responsive 99.4 2.3E-12 7.9E-17 80.6 9.8 81 14-94 5-91 (93)
55 3u30_A Ubiquitin, linear DI-ub 99.4 2.4E-12 8.2E-17 88.4 10.4 83 11-93 15-97 (172)
56 2kdi_A Ubiquitin, vacuolar pro 99.4 2.5E-12 8.7E-17 83.8 9.9 77 17-93 10-86 (114)
57 4eew_A Large proline-rich prot 99.4 3.8E-12 1.3E-16 78.5 10.2 77 11-88 12-88 (88)
58 2daf_A FLJ35834 protein; hypot 99.4 5.9E-12 2E-16 83.3 11.5 84 5-89 5-89 (118)
59 3q3f_A Ribonuclease/ubiquitin 99.4 2.5E-12 8.6E-17 90.9 9.9 78 16-93 105-182 (189)
60 1we7_A SF3A1 protein; structur 99.4 3.5E-12 1.2E-16 83.0 9.7 80 15-94 24-113 (115)
61 1uel_A HHR23B, UV excision rep 99.4 6.1E-12 2.1E-16 79.1 10.5 77 17-93 1-80 (95)
62 2klc_A Ubiquilin-1; ubiquitin- 99.4 8.2E-12 2.8E-16 79.7 10.9 79 12-91 21-99 (101)
63 3u5e_m 60S ribosomal protein L 99.4 7E-14 2.4E-18 92.7 0.3 78 17-94 1-78 (128)
64 2wyq_A HHR23A, UV excision rep 99.4 1.4E-11 4.7E-16 75.2 10.5 75 15-89 4-81 (85)
65 3b1l_X E3 ubiquitin-protein li 99.0 6.6E-14 2.2E-18 84.1 0.0 75 17-91 1-75 (76)
66 2kk8_A Uncharacterized protein 99.3 1.2E-11 4.3E-16 76.5 9.5 75 14-88 8-83 (84)
67 3m62_B UV excision repair prot 99.3 5.2E-12 1.8E-16 81.2 7.9 74 17-90 2-75 (106)
68 1uh6_A Ubiquitin-like 5; beta- 99.3 1.8E-11 6.2E-16 78.8 10.2 74 14-87 26-99 (100)
69 4a20_A Ubiquitin-like protein 99.3 1.2E-11 4.1E-16 79.1 9.4 81 9-89 12-96 (98)
70 3u5c_f 40S ribosomal protein S 99.3 1.8E-13 6.1E-18 93.8 0.0 80 17-96 1-80 (152)
71 1v5o_A 1700011N24RIK protein; 99.3 3.1E-11 1.1E-15 76.9 10.2 80 15-94 6-90 (102)
72 3b08_A Polyubiquitin-C, ubiqui 99.3 2.2E-11 7.4E-16 80.9 9.8 76 17-92 1-76 (152)
73 3u30_A Ubiquitin, linear DI-ub 99.3 1.7E-11 5.9E-16 84.0 9.3 78 15-92 95-172 (172)
74 1wia_A Hypothetical ubiquitin- 99.3 2.7E-11 9.4E-16 75.9 8.4 76 14-92 5-81 (95)
75 3m63_B Ubiquitin domain-contai 99.2 6.8E-12 2.3E-16 80.2 4.9 75 13-88 25-99 (101)
76 1wju_A NEDD8 ultimate buster-1 99.2 1.3E-10 4.5E-15 74.8 10.5 80 12-92 11-94 (100)
77 1v2y_A 3300001G02RIK protein; 99.2 5E-11 1.7E-15 77.3 7.3 79 14-92 5-99 (105)
78 1x1m_A Ubiquitin-like protein 99.2 2.4E-10 8.1E-15 73.4 9.5 77 14-90 10-101 (107)
79 2lxa_A Ubiquitin-like protein 99.2 1.5E-10 5.1E-15 72.5 7.7 75 17-91 2-80 (87)
80 2gow_A HCG-1 protein, ubiquiti 99.1 3.1E-10 1.1E-14 75.5 9.2 81 13-93 14-104 (125)
81 1wgh_A Ubiquitin-like 3, HCG-1 99.1 2.3E-09 7.7E-14 70.5 12.4 80 12-91 12-101 (116)
82 4dbg_A Ranbp-type and C3HC4-ty 99.1 8.9E-10 3E-14 71.4 9.8 80 9-88 15-99 (105)
83 1v86_A DNA segment, CHR 7, way 99.1 4.1E-10 1.4E-14 71.0 8.0 79 9-89 10-88 (95)
84 2kd0_A LRR repeats and ubiquit 99.1 8E-10 2.7E-14 68.3 8.8 66 23-88 18-83 (85)
85 1se9_A Ubiquitin family; ubiqu 99.1 9.9E-10 3.4E-14 73.3 9.8 81 14-94 14-108 (126)
86 3rt3_B Ubiquitin-like protein 99.1 1.3E-09 4.3E-14 73.5 9.7 76 17-92 3-81 (159)
87 2fnj_B Transcription elongatio 99.1 1.4E-09 5E-14 71.8 9.4 76 17-94 3-85 (118)
88 1wxv_A BAG-family molecular ch 99.1 2.3E-09 7.8E-14 66.6 9.7 74 15-89 6-85 (92)
89 2kdb_A Homocysteine-responsive 99.0 1E-09 3.5E-14 70.1 7.9 73 14-86 21-99 (99)
90 2kjr_A CG11242; UBL, ubiquitin 99.0 3.3E-09 1.1E-13 67.2 10.1 74 13-86 12-93 (95)
91 1v5t_A 8430435I17RIK protein; 99.0 1.8E-09 6E-14 67.3 7.7 73 15-88 6-82 (90)
92 1wgg_A Ubiquitin carboxyl-term 99.0 2.2E-09 7.6E-14 67.8 7.4 72 15-88 6-78 (96)
93 3ai5_A Yeast enhanced green fl 99.0 5.1E-09 1.8E-13 78.7 10.4 76 14-89 231-306 (307)
94 4ajy_B Transcription elongatio 98.9 8.5E-09 2.9E-13 68.1 9.3 75 18-94 4-85 (118)
95 2xzm_9 RPS31E; ribosome, trans 98.9 1.5E-10 5.2E-15 81.9 0.4 75 17-96 1-75 (189)
96 1wf9_A NPL4 family protein; be 98.9 3.7E-09 1.3E-13 67.9 6.5 73 15-88 6-94 (107)
97 2kj6_A Tubulin folding cofacto 98.9 1.2E-08 4.1E-13 64.9 8.4 73 14-86 12-93 (97)
98 1t0y_A Tubulin folding cofacto 98.8 3.5E-08 1.2E-12 64.7 9.2 74 14-87 4-85 (122)
99 1v6e_A Cytoskeleton-associated 98.8 2.1E-08 7.2E-13 62.9 7.6 73 15-87 6-86 (95)
100 1oqy_A HHR23A, UV excision rep 98.8 8.5E-09 2.9E-13 79.1 6.6 79 15-93 6-88 (368)
101 4b6w_A Tubulin-specific chaper 98.8 4.7E-08 1.6E-12 60.8 8.2 73 16-88 2-83 (86)
102 2dzj_A Synaptic glycoprotein S 98.7 2.7E-08 9.2E-13 62.0 6.6 71 15-85 9-85 (88)
103 2kzr_A Ubiquitin thioesterase 98.7 1.6E-08 5.6E-13 62.3 4.8 71 17-88 1-77 (86)
104 1wjn_A Tubulin-folding protein 98.6 3.1E-07 1E-11 57.6 8.8 77 13-89 6-93 (97)
105 2dzm_A FAS-associated factor 1 98.4 1.2E-06 4.2E-11 55.9 7.7 72 16-88 9-81 (100)
106 3shq_A UBLCP1; phosphatase, hy 98.4 7.4E-07 2.5E-11 67.0 7.3 74 14-88 3-79 (320)
107 2pjh_A Protein NPL4, nuclear p 98.1 2.8E-06 9.5E-11 52.0 3.5 71 15-86 3-78 (80)
108 2al3_A TUG long isoform; TUG U 98.0 2.8E-05 9.4E-10 49.0 7.6 72 17-88 10-81 (90)
109 2bps_A YUKD protein; ubiquitin 97.6 0.00017 5.7E-09 44.5 6.0 71 15-85 3-80 (81)
110 2dzk_A UBX domain-containing p 97.3 0.0038 1.3E-07 39.9 9.9 84 5-88 2-90 (109)
111 4efo_A Serine/threonine-protei 97.3 0.0013 4.6E-08 41.5 7.1 52 16-67 12-64 (94)
112 2daj_A KIAA0977 protein, COBL- 97.2 0.0017 6E-08 40.5 7.3 70 10-79 4-76 (91)
113 1wj4_A KIAA0794 protein; UBX d 97.2 0.0043 1.5E-07 40.6 9.3 72 14-86 41-117 (124)
114 3qx1_A FAS-associated factor 1 97.2 0.0051 1.8E-07 37.2 8.9 72 14-86 5-81 (84)
115 4a3p_A Ubiquitin carboxyl-term 97.1 0.0022 7.5E-08 45.4 7.8 68 28-95 141-215 (217)
116 3jyu_A Ubiquitin carboxyl-term 97.1 0.0031 1.1E-07 45.0 8.4 79 17-95 140-227 (231)
117 2cr5_A Reproduction 8; UBX dom 96.7 0.02 6.7E-07 36.4 9.1 72 14-86 21-96 (109)
118 1ryj_A Unknown; beta/alpha pro 96.5 0.032 1.1E-06 32.6 8.6 67 16-92 4-70 (70)
119 2kc2_A Talin-1, F1; FERM, adhe 96.5 0.012 4E-07 39.0 7.2 69 18-86 13-120 (128)
120 3rpf_C Molybdopterin convertin 96.4 0.019 6.6E-07 33.7 7.1 57 31-92 16-74 (74)
121 2l32_A Small archaeal modifier 96.4 0.014 4.6E-07 34.9 6.4 65 17-93 3-67 (74)
122 2kl0_A Putative thiamin biosyn 96.3 0.0052 1.8E-07 36.6 4.1 64 25-96 6-69 (73)
123 2k5p_A THis protein, thiamine- 96.0 0.009 3.1E-07 36.1 4.1 67 25-96 6-73 (78)
124 1tyg_B YJBS; alpha beta barrel 95.8 0.017 5.8E-07 35.7 4.9 68 14-92 18-86 (87)
125 2kvr_A Ubiquitin carboxyl-term 95.1 0.021 7.3E-07 37.6 3.8 35 28-62 57-91 (130)
126 1oey_A P67-PHOX, neutrophil cy 95.1 0.084 2.9E-06 32.4 6.2 45 16-62 5-49 (83)
127 1f0z_A THis protein; ubiquitin 95.1 0.046 1.6E-06 31.4 4.7 61 25-92 6-66 (66)
128 1y8x_B Ubiquitin-activating en 94.5 0.029 9.8E-07 35.5 3.0 59 28-86 6-82 (98)
129 3po0_A Small archaeal modifier 94.4 0.26 8.9E-06 29.4 7.2 61 27-92 18-89 (89)
130 1vjk_A Molybdopterin convertin 94.2 0.35 1.2E-05 29.6 7.7 61 27-92 27-98 (98)
131 1fm0_D Molybdopterin convertin 94.0 0.14 5E-06 29.9 5.3 59 28-92 18-81 (81)
132 1s3s_G P47 protein; AAA ATPase 94.0 0.69 2.4E-05 29.9 9.0 70 15-84 51-124 (127)
133 2q5w_D Molybdopterin convertin 93.9 0.11 3.7E-06 30.3 4.6 60 27-92 16-77 (77)
134 2cu3_A Unknown function protei 93.8 0.11 3.9E-06 29.5 4.4 60 25-92 5-64 (64)
135 1h4r_A Merlin; FERM, neurofibr 93.7 0.71 2.4E-05 33.4 9.7 68 13-81 19-91 (314)
136 2ylm_A Ubiquitin carboxyl-term 93.1 0.36 1.2E-05 38.2 7.7 77 12-88 126-217 (530)
137 1j0g_A Hypothetical protein 18 92.6 0.69 2.4E-05 28.4 6.8 79 14-92 8-91 (92)
138 2g1e_A Hypothetical protein TA 92.5 0.65 2.2E-05 27.4 6.7 61 31-92 19-90 (90)
139 1ef1_A Moesin; membrane, FERM 92.5 0.93 3.2E-05 32.4 8.6 64 16-80 1-70 (294)
140 1wz3_A Autophagy 12B, ATG12B, 92.0 0.38 1.3E-05 30.0 5.3 64 10-75 7-75 (96)
141 2inc_C TOUB protein; DIIRON, 4 91.4 1.5 5.3E-05 26.8 7.4 61 28-88 14-82 (83)
142 2ylm_A Ubiquitin carboxyl-term 90.9 0.25 8.7E-06 39.0 4.4 35 28-62 37-71 (530)
143 3ivf_A Talin-1; FERM domain, c 90.7 2.3 7.8E-05 31.5 9.3 70 16-86 3-82 (371)
144 1vd2_A Protein kinase C, IOTA 90.7 1.7 5.8E-05 26.7 7.2 46 15-61 5-51 (89)
145 3w1s_C Ubiquitin-like protein 90.2 1.5 5.2E-05 27.0 6.7 60 14-75 6-70 (91)
146 2kmm_A Guanosine-3',5'-BIS(dip 89.5 1 3.5E-05 25.5 5.3 65 19-92 3-67 (73)
147 4gdk_A Ubiquitin-like protein 89.5 1.2 4.1E-05 27.4 5.8 69 14-83 3-81 (91)
148 3ivf_A Talin-1; FERM domain, c 89.2 4.3 0.00015 30.0 9.8 48 14-61 83-131 (371)
149 2i1j_A Moesin; FERM, coiled-co 89.0 2.8 9.5E-05 33.5 9.0 66 15-81 3-74 (575)
150 1rws_A Hypothetical protein PF 88.9 0.29 1E-05 28.8 2.6 53 31-92 25-77 (77)
151 1rrb_A RAF-1 RBD, RAF proto-on 88.8 3.2 0.00011 26.5 7.9 65 19-86 21-92 (107)
152 3qij_A Protein 4.1; cytoskelet 88.6 1 3.5E-05 32.6 5.8 61 14-74 15-81 (296)
153 3dwg_C 9.5 kDa culture filtrat 88.6 1.7 5.9E-05 25.9 6.1 61 30-92 20-93 (93)
154 2hj1_A Hypothetical protein; s 88.2 1.5 5.2E-05 27.2 5.7 69 15-88 11-85 (97)
155 3u7z_A Putative metal binding 87.8 1.7 5.7E-05 27.4 5.7 73 14-88 6-98 (101)
156 2qjl_A URM1, ubiquitin-related 87.6 3.2 0.00011 25.2 6.9 65 27-92 20-99 (99)
157 2zjd_A Microtubule-associated 87.4 4.4 0.00015 26.5 8.8 72 14-85 33-117 (130)
158 2juo_A GA-binding protein alph 87.4 2.4 8.1E-05 26.1 6.0 60 30-89 6-65 (89)
159 1zps_A PRA-CH, phosphoribosyl- 86.7 0.27 9.3E-06 32.8 1.6 81 13-96 20-104 (138)
160 1eo6_A GATE-16, golgi-associat 86.4 3 0.0001 26.6 6.5 62 14-75 26-94 (117)
161 2r2q_A Gamma-aminobutyric acid 86.0 3.7 0.00013 25.9 6.7 62 14-75 25-93 (110)
162 2l52_A Methanosarcina acetivor 85.4 2.2 7.5E-05 26.1 5.3 56 36-92 27-99 (99)
163 3rui_B Autophagy-related prote 85.2 4.1 0.00014 26.2 6.7 62 14-75 28-96 (118)
164 1q1o_A Cell division control p 85.0 1.5 5.2E-05 27.5 4.4 47 15-61 4-62 (98)
165 3h9d_A ATG8, microtubule-assoc 84.6 4.4 0.00015 26.0 6.6 62 14-75 29-97 (119)
166 1wgk_A Riken cDNA 2900073H19 p 83.8 6.2 0.00021 24.9 8.5 61 28-92 31-108 (114)
167 3ge3_C Toluene-4-monooxygenase 83.8 5.5 0.00019 24.3 8.7 61 28-88 16-83 (84)
168 3m95_A Autophagy related prote 81.5 5.8 0.0002 25.8 6.3 71 14-84 34-115 (125)
169 1wj6_A KIAA0049 protein, RSGI 78.9 9.8 0.00033 24.0 7.2 60 8-70 6-70 (101)
170 3pvl_A Myosin VIIA isoform 1; 77.5 8 0.00027 31.3 7.2 48 14-61 261-309 (655)
171 2npt_A Dual specificity mitoge 76.6 11 0.00039 23.6 6.4 59 13-86 11-71 (106)
172 1v8c_A MOAD related protein; r 75.4 7.9 0.00027 26.0 5.8 60 32-93 19-88 (168)
173 2l05_A Serine/threonine-protei 75.1 12 0.00042 23.2 9.8 66 18-86 19-88 (95)
174 2bkf_A Zinc-finger protein NBR 75.1 12 0.0004 22.9 6.2 51 15-68 5-60 (87)
175 3au4_A Myosin-X; protein-prote 74.8 11 0.00038 29.3 7.2 48 14-61 214-263 (555)
176 1wxm_A A-RAF proto-oncogene se 73.5 13 0.00045 22.7 8.1 67 18-87 9-79 (86)
177 4eut_A Serine/threonine-protei 73.2 22 0.00077 25.7 8.2 72 25-96 320-393 (396)
178 2nvu_B Maltose binding protein 70.5 8.1 0.00028 31.4 5.7 59 28-86 713-789 (805)
179 2oyn_A Hypothetical protein MJ 70.4 2.9 9.8E-05 28.0 2.5 19 74-92 119-137 (146)
180 3hvz_A Uncharacterized protein 68.5 11 0.00038 22.2 4.7 62 18-88 7-68 (78)
181 1gcq_C VAV proto-oncogene; SH3 68.5 2 6.7E-05 24.1 1.2 28 61-88 13-40 (70)
182 1wfy_A Regulator of G-protein 64.5 15 0.00052 23.2 4.9 53 13-65 13-66 (104)
183 2fpe_A C-JUN-amino-terminal ki 60.6 8.2 0.00028 20.8 2.9 21 70-90 15-35 (62)
184 3cta_A Riboflavin kinase; stru 60.2 4.2 0.00015 27.9 1.9 29 68-96 201-229 (230)
185 2i0n_A Class VII unconventiona 59.2 6.6 0.00022 22.6 2.4 23 70-92 22-44 (80)
186 2lj0_A Sorbin and SH3 domain-c 58.6 9.1 0.00031 21.5 2.9 24 69-92 17-40 (65)
187 2dhz_A RAP guanine nucleotide 57.2 19 0.00063 23.3 4.4 74 13-86 6-90 (120)
188 1zuy_A Myosin-5 isoform; SH3 d 57.2 10 0.00035 20.0 2.8 24 69-92 12-35 (58)
189 1jo8_A ABP1P, actin binding pr 56.5 10 0.00035 20.1 2.8 23 70-92 12-34 (58)
190 1ip9_A BEM1 protein; ubiquitin 54.4 34 0.0012 20.8 6.6 49 14-64 10-58 (85)
191 1wwt_A Threonyl-tRNA synthetas 54.4 29 0.001 20.0 5.7 66 12-87 7-72 (88)
192 1pqs_A Cell division control p 54.4 11 0.00038 22.3 2.8 40 28-67 3-50 (77)
193 2j05_A RAS GTPase-activating p 54.0 10 0.00035 20.7 2.5 23 70-92 18-40 (65)
194 1zx6_A YPR154WP; SH3 domain, p 53.4 14 0.00046 19.6 2.9 23 70-92 14-36 (58)
195 2j6f_A CD2-associated protein; 53.3 13 0.00043 20.1 2.8 19 70-88 13-31 (62)
196 2bz8_A SH3-domain kinase bindi 52.9 12 0.00043 19.8 2.7 23 70-92 13-35 (58)
197 3o27_A Putative uncharacterize 52.8 6.8 0.00023 23.0 1.6 24 69-92 31-54 (68)
198 1uti_A GRB2-related adaptor pr 52.6 13 0.00045 19.6 2.8 23 70-92 13-35 (58)
199 2pmv_A Gastric intrinsic facto 52.5 75 0.0025 24.3 7.9 60 28-89 314-398 (399)
200 3eg3_A Proto-oncogene tyrosine 51.6 13 0.00046 19.8 2.7 23 70-92 17-39 (63)
201 1w70_A Neutrophil cytosol fact 51.5 15 0.0005 19.7 2.9 23 70-92 16-38 (60)
202 2g6f_X RHO guanine nucleotide 51.4 15 0.0005 19.6 2.9 23 70-92 16-38 (59)
203 1wmh_B Partitioning defective- 50.7 39 0.0013 20.4 6.4 46 15-61 5-52 (86)
204 2fpf_A C-JUN-amino-terminal ki 50.6 15 0.0005 20.4 2.9 22 70-91 18-39 (71)
205 1uj0_A Signal transducing adap 50.5 15 0.0005 19.8 2.8 23 70-92 17-39 (62)
206 1g2b_A Spectrin alpha chain; c 50.2 14 0.00049 19.9 2.7 23 70-92 33-55 (62)
207 2vwf_A Growth factor receptor- 50.1 15 0.00052 19.3 2.8 23 70-92 14-36 (58)
208 2l66_A SSO7C4, transcriptional 49.9 11 0.00037 20.3 2.1 27 62-88 11-37 (53)
209 1tg0_A BBC1 protein, myosin ta 49.9 15 0.00052 20.1 2.9 23 70-92 19-41 (68)
210 1y0m_A 1-phosphatidylinositol- 49.8 15 0.00052 19.6 2.8 23 70-92 15-37 (61)
211 2a28_A BZZ1 protein; SH3 domai 49.8 16 0.00054 19.0 2.8 21 70-90 12-32 (54)
212 1csk_A C-SRC SH3 domain; phosp 49.6 15 0.00052 20.3 2.8 20 70-89 23-42 (71)
213 2nwm_A Vinexin; cell adhesion; 49.5 15 0.0005 20.3 2.7 23 70-92 13-35 (65)
214 2v1q_A SLA1, cytoskeleton asse 49.5 15 0.0005 19.5 2.7 20 70-89 14-33 (60)
215 2v1y_A Phosphatidylinositol-4, 49.1 36 0.0012 21.4 4.8 49 13-61 16-72 (108)
216 2al6_A Focal adhesion kinase 1 49.0 29 0.00098 25.7 5.0 56 19-74 10-76 (375)
217 1yn8_A NBP2, NAP1-binding prot 49.0 17 0.00057 19.1 2.9 22 70-91 13-34 (59)
218 2x3w_D Syndapin I, protein kin 48.3 12 0.0004 19.9 2.1 22 70-91 15-36 (60)
219 1cka_A C-CRK N-terminal SH3 do 48.0 16 0.00055 19.2 2.7 23 70-92 13-35 (57)
220 2ew3_A SH3-containing GRB2-lik 48.0 17 0.00059 20.2 2.9 23 70-92 15-37 (68)
221 3rnj_A Brain-specific angiogen 47.7 12 0.00042 20.4 2.2 18 71-88 21-38 (67)
222 1k1z_A VAV; SH3, proto-oncogen 47.5 16 0.00055 20.6 2.7 19 71-89 31-49 (78)
223 2ebp_A SAM and SH3 domain-cont 47.4 12 0.00041 21.1 2.1 23 70-92 23-45 (73)
224 2xmf_A Myosin 1E SH3; motor pr 47.3 18 0.00063 19.2 2.9 23 70-92 17-39 (60)
225 2ki8_A Tungsten formylmethanof 47.2 8.4 0.00029 25.0 1.6 19 69-87 59-77 (146)
226 1zlm_A Osteoclast stimulating 47.2 17 0.00059 19.2 2.7 21 70-90 15-35 (58)
227 2gnc_A SLIT-ROBO RHO GTPase-ac 47.1 18 0.00062 19.3 2.8 23 70-92 18-40 (60)
228 1zuu_A BZZ1 protein; SH3 domai 46.8 13 0.00046 19.5 2.2 21 70-90 13-33 (58)
229 1sem_A SEM-5; SRC-homology 3 ( 46.8 17 0.00059 19.1 2.7 23 70-92 14-36 (58)
230 1tuc_A Alpha-spectrin; capping 46.4 13 0.00046 20.2 2.2 22 71-92 2-23 (63)
231 2ct4_A CDC42-interacting prote 46.0 18 0.00061 19.9 2.7 22 70-91 19-40 (70)
232 1ruw_A Myosin-3 isoform, MYO3; 46.0 19 0.00064 19.7 2.8 24 69-92 14-37 (69)
233 1k4u_S Phagocyte NADPH oxidase 45.9 18 0.00061 19.4 2.7 23 70-92 17-39 (62)
234 4e6r_A Cytoplasmic protein NCK 45.9 21 0.00071 18.6 2.9 23 69-91 12-34 (58)
235 2fei_A CD2-associated protein; 45.8 12 0.00042 20.6 2.0 22 70-91 13-34 (65)
236 1wgr_A Growth factor receptor- 45.8 51 0.0018 20.4 5.4 39 15-53 8-46 (100)
237 2drm_A Acanthamoeba myosin IB; 45.7 19 0.00066 18.9 2.7 20 70-89 15-34 (58)
238 1ri9_A FYN-binding protein; SH 45.5 6.2 0.00021 24.9 0.7 24 69-92 52-75 (102)
239 2o9s_A Ponsin; SH3 domain, sig 45.2 20 0.0007 19.5 2.9 23 70-92 18-40 (67)
240 2kgt_A Tyrosine-protein kinase 45.1 12 0.00042 20.7 1.9 22 69-91 21-42 (72)
241 2dl4_A Protein STAC; SH3 domai 45.0 22 0.00074 19.5 3.0 23 70-92 19-41 (68)
242 3qa8_A MGC80376 protein; kinas 45.0 36 0.0012 27.6 5.3 52 25-76 320-372 (676)
243 3c0c_A Endophilin-A2; endocyto 44.7 21 0.0007 19.9 2.9 23 70-92 25-47 (73)
244 1ue9_A Intersectin 2; beta bar 44.7 24 0.00081 19.9 3.2 23 70-92 19-41 (80)
245 2k9x_A Tburm1, uncharacterized 44.7 13 0.00046 23.2 2.2 68 27-95 21-105 (110)
246 2oaw_A Spectrin alpha chain, b 44.2 20 0.00069 19.2 2.7 23 70-92 13-35 (65)
247 2dl3_A Sorbin and SH3 domain-c 44.2 19 0.00066 19.6 2.7 23 70-92 19-41 (68)
248 2ak5_A RHO guanine nucleotide 43.9 21 0.00071 19.2 2.7 23 70-92 18-40 (64)
249 2dnf_A Doublecortin domain-con 43.9 55 0.0019 20.2 5.3 48 29-81 30-81 (108)
250 2bt6_A Adrenodoxin 1; rutheniu 43.8 47 0.0016 19.9 4.7 31 13-43 3-33 (108)
251 2eyx_A V-CRK sarcoma virus CT1 43.7 15 0.00052 20.2 2.2 22 71-92 21-42 (67)
252 2bzy_A CRK-like protein, CRKL 43.6 18 0.00061 19.8 2.5 22 71-92 16-37 (67)
253 2lcs_A NAP1-binding protein 2; 43.5 22 0.00076 20.0 2.9 22 70-91 17-38 (73)
254 2yuo_A CIP85, RUN and TBC1 dom 43.3 17 0.00059 20.5 2.4 23 70-92 19-41 (78)
255 2ke9_A Caskin-2; SH3 domain, A 42.9 14 0.00049 21.5 2.0 24 69-92 30-53 (83)
256 1v1c_A Obscurin; muscle, sarco 42.9 19 0.00064 21.2 2.5 24 69-92 18-41 (71)
257 2cuc_A SH3 domain containing r 42.7 23 0.00079 19.3 2.9 23 70-92 19-41 (70)
258 1tt5_B Ubiquitin-activating en 42.7 8 0.00027 29.7 1.1 58 29-86 343-418 (434)
259 2djq_A SH3 domain containing r 42.4 24 0.00083 19.2 2.9 22 70-91 19-40 (68)
260 2dbk_A CRK-like protein; struc 42.4 17 0.00059 21.1 2.4 22 71-92 31-52 (88)
261 2jt4_A Cytoskeleton assembly c 42.4 21 0.0007 19.6 2.6 20 70-89 18-37 (71)
262 2ydl_A SH3 domain-containing k 42.3 21 0.00073 19.9 2.7 20 70-89 14-33 (69)
263 1x2k_A OSTF1, osteoclast stimu 42.3 25 0.00085 19.2 2.9 21 70-90 19-39 (68)
264 1x2p_A Protein arginine N-meth 42.2 25 0.00087 19.1 3.0 23 70-92 19-41 (68)
265 1yfb_A Transition state regula 42.2 12 0.00041 21.0 1.5 28 61-88 20-47 (59)
266 2pkt_A PDZ and LIM domain prot 42.2 40 0.0014 19.1 4.0 54 30-91 31-86 (91)
267 1w1f_A Tyrosine-protein kinase 42.2 22 0.00074 19.1 2.6 20 70-89 19-38 (65)
268 2k9i_A Plasmid PRN1, complete 41.5 18 0.0006 18.9 2.1 29 28-56 9-37 (55)
269 3u52_E Phenol hydroxylase comp 41.0 70 0.0024 20.6 6.5 61 27-87 38-108 (119)
270 2cu1_A Mitogen-activated prote 41.0 65 0.0022 20.2 5.0 49 14-66 6-55 (103)
271 3u23_A CD2-associated protein; 41.0 25 0.00087 18.7 2.8 23 70-92 19-41 (65)
272 1wie_A RIM binding protein 2; 40.8 25 0.00087 20.8 3.0 15 72-86 37-51 (96)
273 4dxe_H ACP, acyl carrier prote 40.6 35 0.0012 20.6 3.7 47 28-83 17-64 (101)
274 1x6b_A RHO guanine exchange fa 40.5 21 0.00073 20.2 2.5 19 70-88 29-47 (79)
275 2dmo_A Neutrophil cytosol fact 40.5 23 0.00077 19.4 2.6 23 70-92 19-41 (68)
276 3pvl_A Myosin VIIA isoform 1; 39.9 36 0.0012 27.5 4.5 70 18-88 537-606 (655)
277 1b07_A Protein (proto-oncogene 39.1 26 0.00089 19.1 2.7 23 70-92 15-37 (65)
278 2ed0_A ABL interactor 2; coile 38.8 28 0.00094 19.7 2.8 23 70-92 29-51 (78)
279 1x6g_A Megakaryocyte-associate 38.8 24 0.00084 20.1 2.6 22 70-91 29-50 (81)
280 3ulr_B SRC substrate cortactin 38.8 28 0.00096 18.6 2.8 22 70-91 21-42 (65)
281 2dnu_A RUH-061, SH3 multiple d 38.7 22 0.00074 19.5 2.3 24 69-92 19-42 (71)
282 1gbq_A GRB2; complex (signal t 38.6 16 0.00056 20.5 1.8 20 70-89 21-40 (74)
283 2dl8_A SLIT-ROBO RHO GTPase-ac 38.5 26 0.00088 19.4 2.6 23 70-92 21-43 (72)
284 2l0a_A STAM-1, signal transduc 38.4 28 0.00096 19.7 2.8 23 70-92 29-51 (72)
285 2dil_A Proline-serine-threonin 38.3 25 0.00086 19.2 2.5 22 70-91 20-41 (69)
286 2ct3_A Vinexin; SH3 domian, st 38.2 26 0.00088 19.1 2.6 23 70-92 19-41 (70)
287 2pqh_A Spectrin alpha chain, b 38.1 28 0.00094 19.8 2.8 23 70-92 14-36 (80)
288 2ega_A SH3 and PX domain-conta 38.1 18 0.00063 19.8 1.9 23 70-92 20-42 (70)
289 1wgy_A RAP guanine nucleotide 38.1 70 0.0024 20.0 4.8 73 15-87 8-85 (104)
290 2enm_A Sorting nexin-9; SH3-li 37.7 25 0.00084 19.7 2.5 19 71-89 23-41 (77)
291 4esr_A Jouberin; AHI-1, AHI1, 37.6 32 0.0011 18.7 2.9 23 70-92 18-40 (69)
292 3cqt_A P59-FYN, proto-oncogene 37.5 27 0.00091 19.9 2.6 23 70-92 17-39 (79)
293 4f14_A Nebulette; SH3 domain, 37.4 33 0.0011 18.1 2.9 22 70-91 18-39 (64)
294 2ecz_A Sorbin and SH3 domain-c 37.2 21 0.00071 19.6 2.1 23 70-92 19-41 (70)
295 1c1y_B Proto-onkogene serine/t 37.1 65 0.0022 19.1 8.6 65 19-86 4-75 (77)
296 2ekh_A SH3 and PX domain-conta 36.9 31 0.0011 19.6 2.9 24 69-92 19-42 (80)
297 3i5r_A Phosphatidylinositol 3- 36.9 24 0.00083 20.1 2.4 18 70-87 17-34 (83)
298 1ugv_A KIAA0621, olygophrenin- 36.7 13 0.00043 20.8 1.1 21 70-90 22-42 (72)
299 3ngp_A Spectrin alpha chain, b 36.7 32 0.0011 18.1 2.8 24 69-92 17-40 (62)
300 2ed1_A 130 kDa phosphatidylino 36.7 22 0.00077 19.9 2.2 20 70-89 22-41 (76)
301 1i07_A Epidermal growth factor 36.5 24 0.00084 18.7 2.2 19 70-88 13-31 (60)
302 1spk_A RSGI RUH-010, riken cDN 36.5 17 0.00057 20.2 1.6 19 70-88 20-38 (72)
303 1gl5_A Tyrosine-protein kinase 36.4 28 0.00095 18.9 2.5 23 70-92 14-36 (67)
304 4a6q_A Histone deacetylase com 36.2 30 0.001 22.9 3.0 64 28-91 55-141 (143)
305 1oot_A Hypothetical 40.4 kDa p 36.1 33 0.0011 18.1 2.7 20 70-89 15-34 (60)
306 2iim_A Proto-oncogene tyrosine 35.9 27 0.00093 18.6 2.4 19 70-88 18-36 (62)
307 2kxc_A Brain-specific angiogen 35.8 16 0.00055 19.9 1.4 19 70-88 19-37 (67)
308 2da9_A SH3-domain kinase bindi 35.7 31 0.0011 18.9 2.6 20 70-89 19-38 (70)
309 2lx7_A GAS-7, growth arrest-sp 35.6 17 0.00057 20.1 1.4 19 74-92 20-38 (60)
310 1x2q_A Signal transducing adap 35.6 31 0.0011 19.9 2.7 23 70-92 29-51 (88)
311 2yun_A Nostrin; nitric oxide s 35.6 31 0.0011 19.4 2.7 23 70-92 19-41 (79)
312 1x69_A Cortactin isoform A; SH 35.5 36 0.0012 19.2 3.0 23 70-92 29-51 (79)
313 2kxd_A 11-MER peptide, SH3 dom 35.5 23 0.00078 19.7 2.1 22 71-92 12-33 (73)
314 2gjh_A Designed protein; oblig 35.3 23 0.00077 19.7 1.9 33 42-94 23-55 (62)
315 1neg_A Spectrin alpha chain, b 35.3 31 0.0011 20.0 2.7 23 70-92 29-51 (83)
316 3h0h_A Proto-oncogene tyrosine 35.2 32 0.0011 18.9 2.7 23 70-92 27-49 (73)
317 2jte_A CD2-associated protein; 34.8 26 0.00087 18.8 2.1 20 70-89 18-37 (64)
318 2dl7_A KIAA0769 protein; SH3 d 34.8 38 0.0013 18.7 3.0 19 70-88 20-38 (73)
319 3o5z_A Phosphatidylinositol 3- 34.7 23 0.00079 20.7 2.1 27 56-86 13-39 (90)
320 2i4s_A General secretion pathw 34.7 67 0.0023 18.9 4.3 61 24-89 32-94 (105)
321 1wi7_A SH3-domain kinase bindi 34.5 17 0.00058 19.9 1.4 23 70-92 19-41 (68)
322 4dxa_B KREV interaction trappe 34.3 1.1E+02 0.0038 21.8 6.1 54 15-72 4-66 (322)
323 2dl5_A KIAA0769 protein; SH3 d 34.2 29 0.001 19.5 2.4 21 70-90 25-45 (78)
324 1aww_A ATK, AMGX1, BPK, bruton 34.2 21 0.00073 19.4 1.8 23 70-92 20-42 (67)
325 1wyx_A CRK-associated substrat 34.1 29 0.00099 18.9 2.3 21 69-89 14-34 (69)
326 1wxb_A Epidermal growth factor 33.9 27 0.00091 19.1 2.1 19 70-88 19-37 (68)
327 2eqi_A Phospholipase C, gamma 33.8 17 0.00059 19.9 1.3 23 70-92 19-41 (69)
328 2yup_A Vinexin; sorbin and SH3 33.8 24 0.00081 20.5 2.0 23 70-92 29-51 (90)
329 2jmc_A Spectrin alpha chain, b 33.3 25 0.00084 19.9 2.0 23 70-92 3-25 (77)
330 3thk_A Spectrin alpha chain, b 33.3 38 0.0013 18.5 2.8 33 56-92 7-39 (73)
331 2rf0_A Mitogen-activated prote 32.9 35 0.0012 20.1 2.7 20 70-89 41-60 (89)
332 2k9g_A SH3 domain-containing k 32.9 37 0.0013 18.7 2.7 20 70-89 21-40 (73)
333 4eku_A Protein-tyrosine kinase 32.8 1.1E+02 0.0038 22.9 6.0 52 24-75 35-97 (392)
334 3qwy_A Cell death abnormality 32.6 1.3E+02 0.0045 21.3 7.1 52 37-92 119-181 (308)
335 2qcp_X Cation efflux system pr 32.5 28 0.00097 20.4 2.2 20 75-94 52-71 (80)
336 2dbm_A SH3-containing GRB2-lik 32.4 24 0.00082 19.6 1.8 23 70-92 19-41 (73)
337 1wxt_A Hypothetical protein FL 32.1 31 0.001 18.9 2.2 19 70-88 19-37 (68)
338 2csq_A RIM-BP2, RIM binding pr 32.1 31 0.0011 20.4 2.4 21 71-91 38-58 (97)
339 2k2m_A EPS8-like protein 1; al 32.0 31 0.001 18.9 2.2 20 70-89 20-39 (68)
340 4glm_A Dynamin-binding protein 32.0 44 0.0015 18.1 2.9 23 70-92 25-47 (72)
341 2w4f_A Protein LAP4; structura 31.9 69 0.0024 18.2 3.9 55 29-91 37-93 (97)
342 2jw4_A Cytoplasmic protein NCK 31.3 51 0.0017 18.1 3.1 19 70-88 19-37 (72)
343 2cub_A Cytoplasmic protein NCK 31.3 43 0.0015 19.3 2.9 24 69-92 28-51 (88)
344 1s1n_A Nephrocystin 1; beta ba 31.3 25 0.00086 19.1 1.7 23 70-92 22-44 (68)
345 2d8j_A FYN-related kinase; SH3 31.1 28 0.00097 19.3 2.0 22 70-91 19-40 (77)
346 4fgm_A Aminopeptidase N family 31.0 2E+02 0.0067 22.8 8.1 70 14-91 484-554 (597)
347 2epd_A RHO GTPase-activating p 31.0 25 0.00086 19.7 1.7 23 70-92 22-44 (76)
348 2vb2_X Copper protein, cation 30.9 31 0.001 20.6 2.2 20 75-94 60-79 (88)
349 3ny5_A Serine/threonine-protei 30.8 97 0.0033 19.1 8.4 65 19-86 16-84 (96)
350 4ar0_A Type IV pilus biogenesi 30.5 44 0.0015 21.2 3.0 28 24-52 29-56 (128)
351 2ege_A Uncharacterized protein 30.2 38 0.0013 18.9 2.4 17 72-88 28-44 (75)
352 2gmq_A Hypothetical protein EF 30.2 43 0.0015 21.1 2.8 56 14-69 20-76 (118)
353 2k6w_A Putative uncharacterize 30.1 61 0.0021 20.4 3.6 26 8-33 90-115 (120)
354 2he4_A Na(+)/H(+) exchange reg 30.0 74 0.0025 17.9 3.8 54 29-90 31-86 (90)
355 2uzc_A Human pdlim5, PDZ and L 30.0 65 0.0022 18.0 3.5 43 47-89 40-84 (88)
356 2vsp_A PDZ domain-containing p 29.9 53 0.0018 18.6 3.1 44 47-91 40-86 (91)
357 2b86_A Cytoplasmic protein NCK 29.9 51 0.0017 18.2 2.9 19 70-88 16-34 (67)
358 1x43_A Endophilin B1, SH3 doma 29.9 41 0.0014 19.0 2.6 20 70-89 29-48 (81)
359 2d9r_A Conserved hypothetical 29.8 36 0.0012 21.1 2.4 19 72-90 86-104 (104)
360 3hwu_A Putative DNA-binding pr 29.7 85 0.0029 20.1 4.4 31 25-55 11-41 (147)
361 1k3e_A CEST; chaperone, secret 29.4 65 0.0022 21.5 3.8 29 36-64 2-36 (156)
362 2eel_A Cell death activator CI 29.3 99 0.0034 18.8 4.4 64 19-87 12-77 (91)
363 1j3t_A Intersectin 2; beta bar 29.2 49 0.0017 18.3 2.8 20 70-89 22-41 (74)
364 2ysq_A RHO guanine nucleotide 29.2 48 0.0016 18.7 2.8 23 70-92 22-44 (81)
365 3onh_A Ubiquitin-activating en 29.1 1.2E+02 0.0041 19.6 5.2 57 30-86 9-77 (127)
366 1rgw_A ZAsp protein; PDZ, cyph 29.1 59 0.002 18.0 3.2 42 47-88 38-81 (85)
367 2cre_A HEF-like protein; SH3 d 29.0 34 0.0012 18.6 2.1 20 70-89 19-38 (71)
368 2e5k_A Suppressor of T-cell re 28.7 27 0.00091 20.4 1.6 21 69-89 27-47 (94)
369 3ktz_A Ribosome-inactivating p 28.6 1E+02 0.0034 21.9 4.9 27 11-37 46-72 (251)
370 2gqi_A RAS GTPase-activating p 28.6 14 0.00047 20.5 0.3 23 70-92 20-42 (71)
371 2kel_A SVTR protein, uncharact 28.4 45 0.0016 18.2 2.5 32 25-56 10-41 (56)
372 1bb9_A Amphiphysin 2; transfer 28.1 43 0.0015 20.7 2.6 18 70-87 56-73 (115)
373 2oi3_A Tyrosine-protein kinase 28.1 48 0.0016 18.8 2.7 20 70-89 37-56 (86)
374 3gqs_A Adenylate cyclase-like 27.8 31 0.0011 20.7 1.9 19 62-85 74-92 (106)
375 3cf6_E RAP guanine nucleotide 27.7 2.4E+02 0.0081 22.7 7.7 45 10-54 346-390 (694)
376 2eki_A DRG 1, developmentally- 27.7 49 0.0017 20.3 2.7 54 31-88 29-87 (93)
377 2cpg_A REPA protein, transcrip 27.6 39 0.0013 16.8 2.0 26 30-55 4-29 (45)
378 1ujy_A RHO guanine nucleotide 27.5 28 0.00095 19.4 1.5 23 70-92 22-44 (76)
379 1fr3_A MOP, molybdate/tungstat 27.5 37 0.0012 18.1 2.0 34 56-89 24-60 (67)
380 4ag1_C Fynomer; hydrolase-de n 27.5 48 0.0017 19.0 2.6 23 70-92 18-40 (84)
381 3khf_A Microtubule-associated 27.2 38 0.0013 19.5 2.1 46 47-92 47-94 (99)
382 1uhf_A Intersectin 2; beta bar 27.0 39 0.0013 18.5 2.1 19 70-88 20-38 (69)
383 2wlb_A ETP1-FD, electron trans 27.0 1E+02 0.0034 18.1 5.0 30 15-44 2-31 (103)
384 2dlp_A KIAA1783 protein; SH3 d 26.9 38 0.0013 19.3 2.1 19 70-88 20-38 (85)
385 1u5s_A Cytoplasmic protein NCK 26.8 39 0.0013 18.4 2.0 19 70-88 18-36 (71)
386 3po8_A RV0020C protein, putati 26.6 43 0.0015 19.8 2.3 18 62-85 70-87 (100)
387 2jxb_A T-cell surface glycopro 26.3 48 0.0016 19.0 2.4 19 70-88 43-61 (86)
388 1x5q_A LAP4 protein; PDZ domai 26.3 50 0.0017 19.5 2.6 45 47-91 59-105 (110)
389 2csi_A RIM-BP2, RIM binding pr 26.1 54 0.0019 18.2 2.6 19 72-90 28-46 (76)
390 1uff_A Intersectin 2; beta bar 26.0 35 0.0012 20.0 1.8 20 70-89 17-36 (93)
391 2jqj_A DNA damage response pro 25.9 33 0.0011 22.1 1.8 20 62-85 92-111 (151)
392 1x9l_A CUI-DR1885; copper bind 25.9 70 0.0024 20.9 3.4 27 8-34 115-143 (149)
393 2kv8_A RGS12, regulator of G-p 25.8 55 0.0019 18.1 2.6 20 49-68 38-57 (83)
394 2v90_A PDZ domain-containing p 25.7 54 0.0019 18.7 2.6 54 30-92 34-90 (96)
395 2yuq_A Tyrosine-protein kinase 25.6 46 0.0016 19.0 2.3 23 70-92 31-53 (85)
396 2vz5_A TAX1-binding protein 3; 25.5 70 0.0024 20.1 3.3 44 47-91 77-124 (139)
397 4gmv_A RAS-associated and plec 25.4 1.9E+02 0.0065 20.8 6.0 39 15-53 30-68 (281)
398 1udl_A Intersectin 2, KIAA1256 25.4 55 0.0019 19.2 2.7 23 70-92 46-68 (98)
399 2eaq_A LIM domain only protein 25.3 52 0.0018 18.5 2.5 22 65-86 34-55 (90)
400 2o2o_A SH3-domain kinase-bindi 25.1 33 0.0011 20.3 1.6 23 70-92 30-52 (92)
401 3lxf_A Ferredoxin; iron, iron- 25.1 1E+02 0.0035 18.4 3.9 26 18-43 2-27 (104)
402 4h87_A Kanadaptin; FHA domain 25.1 64 0.0022 20.3 3.1 11 75-85 109-119 (130)
403 2kbt_A Chimera of proto-oncoge 25.0 56 0.0019 20.9 2.8 20 70-89 17-36 (142)
404 2cud_A SRC-like-adapter; SH3 d 24.9 50 0.0017 18.6 2.3 22 70-92 29-50 (79)
405 2glw_A PHS018, 92AA long hypot 24.6 46 0.0016 20.1 2.2 27 62-88 59-85 (92)
406 1nm7_A Peroxisomal membrane pr 24.5 45 0.0015 18.7 2.0 21 70-90 19-40 (69)
407 3i18_A LMO2051 protein; alpha- 24.3 67 0.0023 18.7 2.9 18 69-86 16-33 (100)
408 1uhc_A KIAA1010 protein; beta 24.2 58 0.002 18.2 2.5 21 70-90 25-45 (79)
409 1wx6_A Cytoplasmic protein NCK 24.1 63 0.0022 18.5 2.7 20 69-88 28-47 (91)
410 1msp_A MSP, major sperm protei 24.1 76 0.0026 19.8 3.3 25 14-38 26-50 (126)
411 2dm1_A Protein VAV-2; RHO fami 24.1 41 0.0014 18.6 1.8 21 70-90 19-39 (73)
412 1mvf_D MAZE protein, PEMI-like 23.9 41 0.0014 19.3 1.8 21 68-88 18-38 (82)
413 1i1j_A Melanoma derived growth 23.9 54 0.0018 20.1 2.4 21 69-89 33-53 (108)
414 3abf_A 4-oxalocrotonate tautom 23.5 89 0.003 16.3 3.4 24 39-62 21-44 (64)
415 2vkn_A Protein SSU81; membrane 23.5 43 0.0015 18.3 1.8 16 72-87 21-36 (70)
416 2pa1_A PDZ and LIM domain prot 23.2 59 0.002 18.2 2.4 22 65-86 32-53 (87)
417 1ihj_A INAD; intermolecular di 23.2 59 0.002 18.6 2.5 43 47-89 50-95 (98)
418 4a9a_A Ribosome-interacting GT 23.1 37 0.0013 25.4 1.8 16 72-87 360-375 (376)
419 1m1s_A WR4; structural genomic 23.0 73 0.0025 20.0 3.0 25 14-38 24-48 (116)
420 2egc_A SH3 and PX domain-conta 22.9 54 0.0018 18.2 2.2 18 72-89 23-40 (75)
421 1vb7_A PDZ and LIM domain 2; P 22.7 73 0.0025 18.1 2.8 21 66-86 37-57 (94)
422 1z9q_A Neutrophil cytosol fact 22.7 24 0.00083 20.4 0.6 23 70-92 30-52 (79)
423 3hx1_A SLR1951 protein; P74513 22.6 35 0.0012 21.6 1.4 11 75-85 94-104 (131)
424 2q3g_A PDZ and LIM domain prot 22.6 64 0.0022 18.1 2.5 21 66-86 34-54 (89)
425 2yt6_A Adult MALE urinary blad 22.5 74 0.0025 18.8 2.9 23 70-92 39-61 (109)
426 2pzd_A Serine protease HTRA2; 22.5 29 0.00098 20.7 0.9 41 47-88 48-88 (113)
427 3m20_A 4-oxalocrotonate tautom 22.4 99 0.0034 16.4 3.2 24 39-62 19-42 (62)
428 3id1_A Regulator of sigma E pr 22.4 53 0.0018 19.1 2.1 21 66-86 9-29 (95)
429 2kym_A BUD emergence protein 1 22.3 75 0.0026 19.6 2.9 23 69-91 14-36 (120)
430 2d90_A PDZ domain containing p 22.3 83 0.0029 18.1 3.0 21 66-86 37-57 (102)
431 2de0_X Alpha-(1,6)-fucosyltran 22.2 81 0.0028 24.8 3.7 24 69-92 453-476 (526)
432 1gut_A Mopii, molybdate bindin 22.2 47 0.0016 17.8 1.8 34 56-89 24-61 (68)
433 4hti_A Receptor-type tyrosine- 22.1 63 0.0022 20.1 2.5 21 14-37 42-62 (99)
434 1row_A SSP-19, MSP-domain prot 21.9 60 0.0021 20.0 2.4 23 16-38 18-40 (109)
435 1uit_A Human discs large 5 pro 21.7 1.3E+02 0.0046 17.7 4.3 45 47-91 55-101 (117)
436 2d8h_A SH3YL1 protein; SH3 dom 21.5 46 0.0016 18.7 1.7 21 70-90 29-49 (80)
437 3tca_A Amyloid beta A4 precurs 21.4 2E+02 0.0068 19.5 5.8 40 15-54 33-72 (291)
438 1egw_A MADS box transcription 21.3 1.3E+02 0.0045 17.5 5.0 33 14-49 39-71 (77)
439 2dls_A PDZ-rhogef, RHO guanine 21.2 86 0.003 17.8 2.9 22 65-86 35-56 (93)
440 3htn_A Putative DNA binding pr 21.1 1.7E+02 0.0059 18.7 4.7 30 25-54 14-43 (149)
441 2j0j_A Focal adhesion kinase 1 21.0 88 0.003 24.6 3.7 54 21-74 12-76 (656)
442 2f5y_A Regulator of G-protein 20.9 68 0.0023 18.2 2.4 21 66-86 31-51 (91)
443 2j58_A WZA, outer membrane lip 20.8 2.5E+02 0.0087 20.6 6.0 71 14-87 138-231 (359)
444 3ebr_A Uncharacterized RMLC-li 20.6 69 0.0024 20.9 2.6 22 36-57 133-154 (159)
445 2v1r_A Peroxisomal membrane pr 20.6 78 0.0027 17.5 2.6 21 70-90 26-47 (80)
446 1lgp_A Cell cycle checkpoint p 20.6 59 0.002 19.6 2.1 13 74-86 82-94 (116)
447 1z9l_A Vesicle-associated memb 20.5 78 0.0027 19.6 2.7 23 16-38 30-52 (128)
448 2rcz_A Tight junction protein 20.4 66 0.0023 17.4 2.2 30 30-67 25-55 (81)
449 2jvf_A De novo protein M7; tet 20.3 1E+02 0.0035 18.3 3.0 25 16-41 7-33 (96)
450 1uht_A Expressed protein; FHA 20.3 55 0.0019 19.9 1.9 12 74-85 90-101 (118)
451 1whd_A RGS3, regulator of G-pr 20.2 1E+02 0.0036 17.7 3.2 46 47-93 49-97 (100)
452 1g6g_A Protein kinase RAD53; b 20.1 77 0.0026 19.6 2.7 22 61-85 83-104 (127)
453 2zpm_A Regulator of sigma E pr 20.1 69 0.0024 18.0 2.3 19 68-86 13-31 (91)
No 1
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=100.00 E-value=6.1e-33 Score=183.80 Aligned_cols=83 Identities=28% Similarity=0.524 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 9 NNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 9 ~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
.+++++++|+|+|++++|.++.|+|++++||++||++||++.|++.+++||+|||++|.+++||++|+|||||+|||+++
T Consensus 33 ~~k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 33 GDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred cCCCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 045424 89 AFG 91 (98)
Q Consensus 89 q~G 91 (98)
|+|
T Consensus 113 Q~G 115 (115)
T 3kyd_D 113 QCG 115 (115)
T ss_dssp CCC
T ss_pred ccC
Confidence 998
No 2
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.98 E-value=5.1e-32 Score=177.13 Aligned_cols=86 Identities=27% Similarity=0.512 Sum_probs=79.8
Q ss_pred CCCCCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEE
Q 045424 6 SSKNNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDA 85 (98)
Q Consensus 6 ~~~~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv 85 (98)
..++.++++++|+|+|++ +|.++.|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||
T Consensus 21 ~~~~~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 21 EVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp CCCCCCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred ccCCCCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEE
Confidence 346677789999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EceecCC
Q 045424 86 MYHAFGG 92 (98)
Q Consensus 86 ~~~q~GG 92 (98)
+++|+||
T Consensus 100 ~~~q~GG 106 (106)
T 2eke_C 100 HREQIGG 106 (106)
T ss_dssp EECC---
T ss_pred EeecccC
Confidence 9999998
No 3
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.97 E-value=8.6e-32 Score=171.59 Aligned_cols=82 Identities=27% Similarity=0.491 Sum_probs=78.1
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+++.|+|+|++++|.++.|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|+||
T Consensus 2 ~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc
Q 045424 93 GH 94 (98)
Q Consensus 93 ~~ 94 (98)
++
T Consensus 82 ~~ 83 (91)
T 2io0_B 82 VY 83 (91)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 4
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-31 Score=191.33 Aligned_cols=87 Identities=25% Similarity=0.479 Sum_probs=78.4
Q ss_pred CCCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 8 KNNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 8 ~~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
+|+.+|+++|+|+|+ ++|.+++|+|+++|||++||++||++.|++++++||+|||++|.+++||++|+|||||+|||++
T Consensus 49 KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 49 KPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp ------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred CCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 444456899999997 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcc
Q 045424 88 HAFGGGHD 95 (98)
Q Consensus 88 ~q~GG~~~ 95 (98)
+|+||+.+
T Consensus 128 eQ~GG~~~ 135 (207)
T 3tix_A 128 EQIGGLPS 135 (207)
T ss_dssp CCCTTGGG
T ss_pred eccCCCcc
Confidence 99999764
No 5
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.97 E-value=3.2e-31 Score=172.64 Aligned_cols=83 Identities=25% Similarity=0.472 Sum_probs=80.4
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
++.+|+|+|++++|..++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|+||
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccc
Q 045424 93 GHD 95 (98)
Q Consensus 93 ~~~ 95 (98)
+++
T Consensus 101 ~~~ 103 (104)
T 1wz0_A 101 PSS 103 (104)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 6
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.97 E-value=4.1e-31 Score=168.74 Aligned_cols=80 Identities=28% Similarity=0.521 Sum_probs=75.1
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
++.+|+|+|++++|..++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|+|||+|||+++|+||
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.97 E-value=3.3e-31 Score=174.21 Aligned_cols=88 Identities=32% Similarity=0.587 Sum_probs=80.6
Q ss_pred CCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 9 NNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 9 ~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
+..+++++|+|+|++++|..+.|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++
T Consensus 19 ~~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 19 TCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp CCCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred CCCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccc
Q 045424 89 AFGGGHDH 96 (98)
Q Consensus 89 q~GG~~~~ 96 (98)
|+||.-+|
T Consensus 99 q~Gg~~~~ 106 (110)
T 2k8h_A 99 QTGGLEHH 106 (110)
T ss_dssp CCCC----
T ss_pred ccCccccc
Confidence 99996554
No 8
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.97 E-value=8.2e-31 Score=167.78 Aligned_cols=83 Identities=27% Similarity=0.490 Sum_probs=78.9
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
++++|+|+|++++|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+++|+||
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccc
Q 045424 93 GHD 95 (98)
Q Consensus 93 ~~~ 95 (98)
++-
T Consensus 84 ~~~ 86 (94)
T 2io1_B 84 VPE 86 (94)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 9
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=162.99 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 11 KKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 11 ~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
+..+.+|+|+|++ +|.+++|+||++|||+|||++||++.|++++++||+|||.+|.+++||++|+|||||+|||++
T Consensus 16 ~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 16 PETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 3347889999995 789999999999999999999999999999999999999999999999999999999999986
No 10
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.96 E-value=8.8e-30 Score=164.23 Aligned_cols=79 Identities=16% Similarity=0.361 Sum_probs=73.2
Q ss_pred CCCCCCCCcEEEEEEccCCC-EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEE
Q 045424 8 KNNKKPQHLINLIIKSQDGD-KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 8 ~~~~~~~~~I~I~v~~~~g~-~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~ 86 (98)
.+..+++++|+|+|++++|. ++.|+|+++|||++||++||++.|++.+++||+|||++|.+++||++|+|||||+|||+
T Consensus 17 ~~~~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 17 RGSTETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp ---CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCCCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34555789999999999995 89999999999999999999999999999999999999999999999999999999997
No 11
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.96 E-value=9.3e-32 Score=193.68 Aligned_cols=86 Identities=28% Similarity=0.506 Sum_probs=2.0
Q ss_pred CCCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 8 KNNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 8 ~~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
+|+++|+++|+|+| +++|.++.|+|+++|||++||++||++.|++++++||+|||++|.+++||++|+|||||+|||++
T Consensus 13 ~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 13 KPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 67788899999999 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCc
Q 045424 88 HAFGGGH 94 (98)
Q Consensus 88 ~q~GG~~ 94 (98)
+|+||+.
T Consensus 92 eQ~GG~~ 98 (227)
T 3v7o_A 92 EQIGGLT 98 (227)
T ss_dssp ----CCC
T ss_pred cccCCch
Confidence 9999964
No 12
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.9e-30 Score=182.43 Aligned_cols=86 Identities=28% Similarity=0.536 Sum_probs=78.8
Q ss_pred CCCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 8 KNNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 8 ~~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
+|+.+|+++|+|+|+ ++|..++|+|+++|||++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|++
T Consensus 21 kp~~~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 21 KPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp ----CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCCCCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 455567999999997 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCc
Q 045424 88 HAFGGGH 94 (98)
Q Consensus 88 ~q~GG~~ 94 (98)
+|+||..
T Consensus 100 ~q~gg~k 106 (200)
T 3pge_A 100 EQIGGGG 106 (200)
T ss_dssp CCSCCC-
T ss_pred ccCcCcC
Confidence 9999974
No 13
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.95 E-value=3.6e-28 Score=150.77 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=72.1
Q ss_pred CCCCcEEEEEEccCCC-EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEE
Q 045424 12 KPQHLINLIIKSQDGD-KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 12 ~~~~~I~I~v~~~~g~-~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~ 86 (98)
.++++|+|+|++++|. ++.|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||+
T Consensus 3 ~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 3 LGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp TCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4578899999999996 89999999999999999999999999999999999999999999999999999999997
No 14
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.95 E-value=2.2e-28 Score=149.09 Aligned_cols=72 Identities=28% Similarity=0.523 Sum_probs=70.1
Q ss_pred cEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 16 LINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
+|+|+|++++|.++.|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||++
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999974
No 15
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.94 E-value=2.2e-27 Score=170.02 Aligned_cols=86 Identities=27% Similarity=0.515 Sum_probs=78.8
Q ss_pred CCCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 8 KNNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 8 ~~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
+|.++++++|+|+|++ +|.++.|+|+++|+|++||++||++.|++.+++||+|||++|++++||++|+|||+|+|||+.
T Consensus 13 ~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 13 KPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp -----CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred cceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 5677789999999998 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCc
Q 045424 88 HAFGGGH 94 (98)
Q Consensus 88 ~q~GG~~ 94 (98)
+|+||..
T Consensus 92 eq~Gg~t 98 (209)
T 3uf8_A 92 EQIGGST 98 (209)
T ss_dssp SCTTCCC
T ss_pred ccccccc
Confidence 9999864
No 16
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=99.93 E-value=8.3e-28 Score=184.03 Aligned_cols=88 Identities=25% Similarity=0.479 Sum_probs=0.0
Q ss_pred CCCCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEE
Q 045424 7 SKNNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 7 ~~~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~ 86 (98)
++|+.+++++|+|+|++ +|.+++|+|++++||++||++||++.|++.++++|+|+|++|.+++||++|+|||||+|+|+
T Consensus 21 ~~~~~~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~ 99 (389)
T 4da1_A 21 VKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAH 99 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeee
Confidence 45566678999999998 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCcc
Q 045424 87 YHAFGGGHD 95 (98)
Q Consensus 87 ~~q~GG~~~ 95 (98)
++|+||...
T Consensus 100 ~~q~gg~n~ 108 (389)
T 4da1_A 100 REQIGGENL 108 (389)
T ss_dssp ---------
T ss_pred ecccccccc
Confidence 999999653
No 17
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.93 E-value=1.2e-27 Score=183.30 Aligned_cols=85 Identities=27% Similarity=0.507 Sum_probs=0.5
Q ss_pred CCCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 8 KNNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 8 ~~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
++.++|+++|+|+|++ +|.++.|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||++
T Consensus 13 ~~~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 13 KPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 4566689999999998 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 045424 88 HAFGGG 93 (98)
Q Consensus 88 ~q~GG~ 93 (98)
+|+||.
T Consensus 92 ~Q~g~~ 97 (360)
T 3ix6_A 92 EQIGGM 97 (360)
T ss_dssp -----C
T ss_pred ccCchH
Confidence 999995
No 18
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.90 E-value=3.8e-23 Score=128.20 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=69.8
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCc-ceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFK-STPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~-~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
..|++-+++.....+.|+|++++++++||++||++.|++.+ .++|.|||.||.+++||++|+|+|||.|||.+.
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL~ 82 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVLD 82 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC-
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeeeC
Confidence 46899999988888999999999999999999999999998 999999999999999999999999999999873
No 19
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.86 E-value=2.9e-21 Score=123.04 Aligned_cols=83 Identities=29% Similarity=0.543 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 10 NKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 10 ~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
.++++..|+|+|++.+|..+.|.|.+++++..|+++|+++.|++++++||+|+|+.|.++.|+++++|++||+|+++++|
T Consensus 15 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 15 DKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp ----CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESS
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEec
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 045424 90 FGG 92 (98)
Q Consensus 90 ~GG 92 (98)
.||
T Consensus 95 ~GG 97 (97)
T 1wyw_B 95 TGG 97 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 998
No 20
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.86 E-value=3.8e-21 Score=117.31 Aligned_cols=78 Identities=28% Similarity=0.547 Sum_probs=75.1
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+.|+|+|++.+|..+.|.|++++++..|+++|+++.|+++++++|+|+|+.|.++.|+++++|++||+|+++++|.||
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999998
No 21
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.9e-16 Score=100.57 Aligned_cols=85 Identities=12% Similarity=0.238 Sum_probs=75.5
Q ss_pred CCCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 8 KNNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 8 ~~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
.++..++..|.|.|+..+|..+.+.|.+++++..|+..++++.|++++.++|+|+|+.|.++.|.+++++++|++|++.+
T Consensus 14 ~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 14 ENLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp --------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CCCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 34445578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q 045424 88 HAFGG 92 (98)
Q Consensus 88 ~q~GG 92 (98)
++.||
T Consensus 94 rl~GG 98 (98)
T 4hcn_B 94 RLRGG 98 (98)
T ss_dssp BCSCC
T ss_pred ecCCC
Confidence 99998
No 22
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.69 E-value=5.3e-16 Score=95.58 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=77.7
Q ss_pred CCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecC
Q 045424 12 KPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 12 ~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 91 (98)
.+...|.|.|++.+|..+.+.|.+++++..|+..+++..|++++.++|+|+|..|.++.|.+++++++|++|++++++.|
T Consensus 8 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 8 GSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred CCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 045424 92 G 92 (98)
Q Consensus 92 G 92 (98)
|
T Consensus 88 G 88 (88)
T 3dbh_I 88 G 88 (88)
T ss_dssp C
T ss_pred C
Confidence 8
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=4.4e-16 Score=95.26 Aligned_cols=80 Identities=13% Similarity=0.293 Sum_probs=72.5
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCc
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGH 94 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~ 94 (98)
..|.|+|++.+|..+.+.|.+++++..|++.++++.+++++.++|+|+|..|.++.|.+++++++|++|++++++.||+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g 81 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGG 81 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC----
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999964
No 24
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.6e-15 Score=93.53 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=77.8
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCC
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGG 93 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~ 93 (98)
...|+|.|+..+|..+.+.|.+++++..|++.++++.|++++.++|+|+|+.|.++.|.+++++++|++|++.+++.||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 46799999998898899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cc
Q 045424 94 HD 95 (98)
Q Consensus 94 ~~ 95 (98)
.+
T Consensus 85 ~~ 86 (87)
T 1wh3_A 85 SS 86 (87)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2e-15 Score=92.16 Aligned_cols=81 Identities=12% Similarity=0.264 Sum_probs=75.2
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCc
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGH 94 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~ 94 (98)
..|.|.|++.+|..+.+.+.+++++..|++.++++.+++++.++|+|+|+.|.++.|.+++++++|++|++++++.||..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~g 81 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGG 81 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC--
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred c
Q 045424 95 D 95 (98)
Q Consensus 95 ~ 95 (98)
.
T Consensus 82 g 82 (85)
T 3mtn_B 82 G 82 (85)
T ss_dssp -
T ss_pred C
Confidence 3
No 26
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.64 E-value=2.6e-15 Score=89.61 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=71.3
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+.|+|++.+|..+.+.+.+++++..|+..+++..|++++.++|+|+|+.|.++.|.+++++++|++|++.+++.||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4688888899999999999999999999999999999999999999999999999999999999999999999998
No 27
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.63 E-value=3.8e-15 Score=88.91 Aligned_cols=76 Identities=12% Similarity=0.294 Sum_probs=72.8
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+.|+|++.+|..+.+.+.+++++..|++.+++..|++++.++|+|+|+.|.++.|.+++++.+|++|++.+++.||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4688888889999999999999999999999999999999999999999999999999999999999999999998
No 28
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.62 E-value=7.8e-15 Score=89.02 Aligned_cols=77 Identities=9% Similarity=0.126 Sum_probs=74.3
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecC
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 91 (98)
+.|.|.|++.+|..+.+.|.+++++..|+..++++.|++++.++|+|.|+.|.++.|.+++++++|++|++.+++.|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999887
No 29
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=92.27 Aligned_cols=82 Identities=11% Similarity=0.155 Sum_probs=71.3
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCc
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGH 94 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~ 94 (98)
..|.|.|++.+|..+.+.|.+++++..|+..++++.|++++.++|+|.|..|.++.|.+++++++|++|.+..++.||.-
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGLE 82 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC------
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCcc
Confidence 46899999988999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cc
Q 045424 95 DH 96 (98)
Q Consensus 95 ~~ 96 (98)
+|
T Consensus 83 ~~ 84 (88)
T 2hj8_A 83 HH 84 (88)
T ss_dssp --
T ss_pred cc
Confidence 55
No 30
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.60 E-value=7.7e-15 Score=91.99 Aligned_cols=79 Identities=10% Similarity=0.228 Sum_probs=72.6
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCcc
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGHD 95 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~~ 95 (98)
|.|.|+..+|..+.+.|.+++++..|+..+++..|++++.++|+|+|..|.++.|.+++++++|++|++++++.||..-
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 5788888899999999999999999999999999999999999999999999999999999999999999999999653
No 31
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.60 E-value=1.2e-14 Score=94.43 Aligned_cols=79 Identities=11% Similarity=0.266 Sum_probs=75.6
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...|.|.|+..+|..+.+.|.+++++..|+..++++.|++++.+||+|.|+.|.++.|.+++++++|++|++.+++.||
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999998
No 32
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=8.6e-15 Score=91.22 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=69.0
Q ss_pred cEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCc
Q 045424 16 LINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGH 94 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~ 94 (98)
-+.|.|+..+|..+.+.+.+++++..|++.++++.|++++.++|+|+|..|.++.|.+++++++|++|.+.+++.||..
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 4678888899999999999999999999999999999999999999999999999999999999999999999999975
No 33
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.57 E-value=4.3e-14 Score=88.21 Aligned_cols=80 Identities=9% Similarity=0.240 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 10 NKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 10 ~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
...+...|.|.|+..+|..+.+.|.+++++..|+..++++.|++++.++|+|+|..|.++.|..++++++|++|++.+++
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 33447889999999999999999999999999999999999999999999999999999999999999999999999875
No 34
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.57 E-value=3.2e-14 Score=92.22 Aligned_cols=79 Identities=11% Similarity=0.266 Sum_probs=75.3
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...|.|+|++.+|..+.+.|.+++++..|+..++++.|++++.++|+|+|+.|.++.|.+++++++|++|++.+++.||
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4679999999899999999999999999999999999999999999999999999999999999999999999999998
No 35
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=90.89 Aligned_cols=80 Identities=13% Similarity=0.243 Sum_probs=71.7
Q ss_pred CCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceec
Q 045424 11 KKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 11 ~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~ 90 (98)
+.+...|.|.|++ |..+.+.|.+++++..|++.++++.|++++.++|+|.|+.|.++.|.+++++++|++|.+.+++.
T Consensus 14 ~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 14 LVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp ------CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred CCCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 3456678999987 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 045424 91 GG 92 (98)
Q Consensus 91 GG 92 (98)
||
T Consensus 92 GG 93 (93)
T 2l7r_A 92 GG 93 (93)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 36
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.57 E-value=2.1e-14 Score=89.44 Aligned_cols=78 Identities=17% Similarity=0.294 Sum_probs=71.3
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCc
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGH 94 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~ 94 (98)
|.|.|++.+|..+.+.|.+++++..|+...+++.|++++.++|+|.|..|.++.|.+++++++|++|.+.+++.||..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 467888889999999999999999999999999999999999999999999999999999999999999999999954
No 37
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=6.5e-14 Score=86.61 Aligned_cols=82 Identities=11% Similarity=0.109 Sum_probs=76.6
Q ss_pred CCcEEEEEEccCC-CEEEE-EEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecC
Q 045424 14 QHLINLIIKSQDG-DKRFF-QFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 14 ~~~I~I~v~~~~g-~~~~f-~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 91 (98)
...|.|.|+..+| ..+.+ .+.+++++..|+..++++.|++++.++|+|.|..|.++.|.+++++.+|++|++++++.|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 3569999999888 68899 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 045424 92 GGHD 95 (98)
Q Consensus 92 G~~~ 95 (98)
|..+
T Consensus 85 G~~~ 88 (89)
T 1wy8_A 85 GPSS 88 (89)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9754
No 38
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=7.3e-14 Score=92.70 Aligned_cols=81 Identities=12% Similarity=0.187 Sum_probs=71.9
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+...|+|.|++. |..+.+.|.+++++..|+..++++.|++.+.+||+|.|+.|.++.|.+++++++|++|.++.++.||
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 467899999988 8889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 045424 93 GH 94 (98)
Q Consensus 93 ~~ 94 (98)
..
T Consensus 108 ~~ 109 (125)
T 1j8c_A 108 SS 109 (125)
T ss_dssp --
T ss_pred CC
Confidence 53
No 39
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=6e-14 Score=88.20 Aligned_cols=81 Identities=14% Similarity=0.248 Sum_probs=76.9
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+...|+|+|+.. |..+.+.|.+++++..|++.++++.|++++.++|+|.|+.|.++.|.+++++++|++|++++++.||
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 568899999987 8889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 045424 93 GH 94 (98)
Q Consensus 93 ~~ 94 (98)
..
T Consensus 93 ~~ 94 (96)
T 1wx8_A 93 PS 94 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 40
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=9.9e-14 Score=89.02 Aligned_cols=84 Identities=14% Similarity=0.209 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 10 NKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 10 ~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
...+...|+|+|+..++. +.+.|..++++..|+..++++.|++.+.++|+|.|+.|.++.|.+++++++|++|++++++
T Consensus 11 ~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 11 PVQDPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp CCCCSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECC
T ss_pred CCCCCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 344578899999988775 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 045424 90 FGGGH 94 (98)
Q Consensus 90 ~GG~~ 94 (98)
.||..
T Consensus 90 ~~~~~ 94 (106)
T 1wx7_A 90 QHRAM 94 (106)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 99854
No 41
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=7.2e-14 Score=89.87 Aligned_cols=84 Identities=6% Similarity=0.030 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 10 NKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 10 ~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
++.++..|.|+|+..+|..+.+.|.+++++..|+..++++.|++.+.+||+|.|+.|.++.|.+++++.+|++|++++++
T Consensus 17 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 17 PPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp ----CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred CCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 44457889999999889989999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCC
Q 045424 90 FGGG 93 (98)
Q Consensus 90 ~GG~ 93 (98)
..+.
T Consensus 97 ~~~~ 100 (106)
T 1ttn_A 97 PVQN 100 (106)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7664
No 42
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.54 E-value=7.2e-14 Score=88.24 Aligned_cols=77 Identities=12% Similarity=0.289 Sum_probs=72.8
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCC
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGG 93 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~ 93 (98)
+.|+|++.+|..+.+.|.+++++..|+..+++..|++++.++|+|+|+.|.++.|.+++++.+|++|.+..++.||.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 46888888899999999999999999999999999999999999999999999999999999999999999999884
No 43
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.51 E-value=2.4e-13 Score=84.32 Aligned_cols=81 Identities=16% Similarity=0.268 Sum_probs=74.2
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+...|.|+|+..+|..+.+.|.+++++..|+...+++.|++++.+||+|.|+.|.++.|..++++ +|++|+++++..++
T Consensus 2 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 2 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CCcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999 89999999998776
Q ss_pred Cc
Q 045424 93 GH 94 (98)
Q Consensus 93 ~~ 94 (98)
..
T Consensus 81 ~~ 82 (90)
T 4dwf_A 81 TH 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 44
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.50 E-value=2.3e-13 Score=92.06 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCC
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGG 93 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~ 93 (98)
...|.|.|++.+|..+.+.|.+++++..|++..+++.|++++.++|+|+|..|.++.|.+++++++|++|++.+++.||+
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 45688889988999999999999999999999999999999999999999999999999999999999999999999996
No 45
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.48 E-value=5.2e-13 Score=88.84 Aligned_cols=78 Identities=12% Similarity=0.265 Sum_probs=73.5
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.|.|++.+|..+.+.+.+++++..|++.++++.|++++.++|+|+|+.|.++.|.+++++++|++|++.+++.||
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 447888888889999999999999999999999999999999999999999999999999999999999999999998
No 46
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=9.6e-13 Score=83.98 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 10 NKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 10 ~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
.+..+..|.|.|+..+|. ..+.|.+++++..|++.++++.|++++.++|+|.|+.|.++.|.+++++++|++|.+.++.
T Consensus 16 ~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 16 PRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp CSCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred CCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence 344578899999998875 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 045424 90 FGGG 93 (98)
Q Consensus 90 ~GG~ 93 (98)
.||-
T Consensus 95 ~~~p 98 (100)
T 1yqb_A 95 QHRA 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8874
No 47
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.46 E-value=8.2e-13 Score=84.20 Aligned_cols=75 Identities=9% Similarity=0.145 Sum_probs=71.0
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
-.+.|.|+|++..|+.+.+.+.+++++..|++..+++.|++++++|++|.|+.|.+..|.+++++.||++|+++.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 368899999999999999999999999999999999999999999999999999999999999999999999874
No 48
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.46 E-value=1e-12 Score=83.02 Aligned_cols=80 Identities=13% Similarity=0.194 Sum_probs=74.8
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCC-CChhhcCCCCCCEEEEEceecCC
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYS-KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~-~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...|.|.|++..+ .+.+.|.+++++..|+...+++.|++++.++++|.|+.|.++ .|.+++++.+|++|.+.+++.||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 3568999998877 788999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred Cc
Q 045424 93 GH 94 (98)
Q Consensus 93 ~~ 94 (98)
.-
T Consensus 92 ~~ 93 (94)
T 2kan_A 92 AK 93 (94)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 49
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-12 Score=79.35 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=71.3
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
...|.|.|+..+|..+.+.+.+++++..|++.+++..|++++.++++|.|+.|.++.|.+++++.+|++|++.++.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 3569999998889989999999999999999999999999999999999999999999999999999999998764
No 50
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.44 E-value=1.4e-12 Score=78.11 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=67.9
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
|+|.|++ +|..+.+.+.+++++..|+..+++..|++++.++|+|.|..|.++.|.+++++.+|++|++..++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7888888 88888999999999999999999999999999999999999999999999999999999998654
No 51
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=1.4e-12 Score=78.66 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=69.5
Q ss_pred cEEEEEEccCCCEE-EEE-EcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 16 LINLIIKSQDGDKR-FFQ-FNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 16 ~I~I~v~~~~g~~~-~f~-Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
.+.|.|++.+|..+ .+. +.+++++..|+..++++.|++++.++++|.|..|.++.|.+++++.+|++|++.+++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 47889998889885 898 999999999999999999999999999999999999999999999999999998875
No 52
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.41 E-value=1.4e-12 Score=84.34 Aligned_cols=82 Identities=9% Similarity=0.058 Sum_probs=76.6
Q ss_pred CCcEEEEEEcc---CCCEEEEEEcC-ccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 14 QHLINLIIKSQ---DGDKRFFQFNH-DVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 14 ~~~I~I~v~~~---~g~~~~f~Ik~-~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
...|+|+|+.. +|..+.+.+.+ ++++..|+...++..|++++.++++|.|..|.++.|.+++++.+|++|.+.+++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 35699999988 78889999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcc
Q 045424 90 FGGGHD 95 (98)
Q Consensus 90 ~GG~~~ 95 (98)
.||..|
T Consensus 105 ~GGk~h 110 (111)
T 1we6_A 105 RSGPSS 110 (111)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 999543
No 53
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.41 E-value=1.5e-12 Score=90.12 Aligned_cols=78 Identities=13% Similarity=0.308 Sum_probs=72.4
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCc
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGH 94 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~ 94 (98)
|.|.|+..+|..+.+.|.+++++..|+...+++.|++++++||+|.|+.|.++.|.+++++++|++|++.+++.||..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k 78 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGG 78 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccc
Confidence 468888889999999999999999999999999999999999999999999999999999999999999999999954
No 54
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=2.3e-12 Score=80.63 Aligned_cols=81 Identities=9% Similarity=0.076 Sum_probs=73.8
Q ss_pred CCcEEEEEEccCCC--EEEEEEcCccHHHHHHHHHHHhc--CCCCcceeEEECCeecCCCCChhhc--CCCCCCEEEEEc
Q 045424 14 QHLINLIIKSQDGD--KRFFQFNHDVEIKRLLIKYCETK--SQPFKSTPFLINGNRFDYSKTADQL--GLKDGDEIDAMY 87 (98)
Q Consensus 14 ~~~I~I~v~~~~g~--~~~f~Ik~~t~l~kL~~~y~~~~--g~~~~~~rF~fdG~~l~~~~Tp~~l--~medgD~Idv~~ 87 (98)
...|+|.|++.++. .+.+.+.+++++..|++..++.. +++++.+|++|.|+.|.++.|.+++ ++++|.+|++.+
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45699999988887 56666779999999999999998 9999999999999999999999999 999999999999
Q ss_pred eecCCCc
Q 045424 88 HAFGGGH 94 (98)
Q Consensus 88 ~q~GG~~ 94 (98)
+..||..
T Consensus 85 ~~~gg~~ 91 (93)
T 1wgd_A 85 NVKSGPS 91 (93)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9999854
No 55
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.40 E-value=2.4e-12 Score=88.37 Aligned_cols=83 Identities=11% Similarity=0.233 Sum_probs=76.1
Q ss_pred CCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceec
Q 045424 11 KKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 11 ~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+...|.|.|+..+|..+.+.|.+++++..|+...++..|++++.++|+|.|..|.++.|..++++.+|++|.+.++..
T Consensus 15 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 15 VPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp ----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 045424 91 GGG 93 (98)
Q Consensus 91 GG~ 93 (98)
||.
T Consensus 95 gg~ 97 (172)
T 3u30_A 95 GGM 97 (172)
T ss_dssp CCE
T ss_pred ccc
Confidence 873
No 56
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.5e-12 Score=83.82 Aligned_cols=77 Identities=12% Similarity=0.253 Sum_probs=73.5
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCC
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGG 93 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~ 93 (98)
..|.|+..+|..+.+.|.+++++..|++.++++.|++++.++|+|.|..|.++.|.+++++.+|++|.+.+++.||.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999995
No 57
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.40 E-value=3.8e-12 Score=78.51 Aligned_cols=77 Identities=14% Similarity=0.275 Sum_probs=70.3
Q ss_pred CCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 11 KKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 11 ~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
......|.|.|+..+|..+.+.+.+++++..|+...+++.|++++.+|++|.|+.|.++.|.+++++ +|++|++.++
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 12 VEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp ---CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred ecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 8999998764
No 58
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.9e-12 Score=83.26 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCcEEEEEE-ccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEE
Q 045424 5 SSSKNNKKPQHLINLIIK-SQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEI 83 (98)
Q Consensus 5 ~~~~~~~~~~~~I~I~v~-~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~I 83 (98)
+|-....++ ..|+|+|+ ...+..+.+.+.+++++..|++.+++..+++.+.+||+|+|+.|.+++|.+++++++|.+|
T Consensus 5 ~~~~~~~~~-~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TI 83 (118)
T 2daf_A 5 SSGQESVED-SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIV 83 (118)
T ss_dssp CCCCCCCCS-SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEE
T ss_pred hhhhhcccC-ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEE
Confidence 333444444 44999987 7778889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcee
Q 045424 84 DAMYHA 89 (98)
Q Consensus 84 dv~~~q 89 (98)
++.+..
T Consensus 84 hLvi~s 89 (118)
T 2daf_A 84 QVEIFS 89 (118)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 998765
No 59
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.39 E-value=2.5e-12 Score=90.92 Aligned_cols=78 Identities=13% Similarity=0.269 Sum_probs=75.5
Q ss_pred cEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCC
Q 045424 16 LINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGG 93 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~ 93 (98)
.|.|.|+..+|..+.+.|.+++++..|+...++..|++++.++|+|.|..|.++.|.+++++++|++|++.+++.||.
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999995
No 60
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.38 E-value=3.5e-12 Score=82.97 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=74.1
Q ss_pred CcEEEEEEccC----------CCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEE
Q 045424 15 HLINLIIKSQD----------GDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEID 84 (98)
Q Consensus 15 ~~I~I~v~~~~----------g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Id 84 (98)
..|+|.|+.++ |..+.+.|.+++++..|+...++..|++++.++++|.|..|.++.|.+++++.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 57888888764 56788999999999999999999999999999999999999999999999999999999
Q ss_pred EEceecCCCc
Q 045424 85 AMYHAFGGGH 94 (98)
Q Consensus 85 v~~~q~GG~~ 94 (98)
+.+++.||.-
T Consensus 104 lv~rl~GGk~ 113 (115)
T 1we7_A 104 LALKERSGPS 113 (115)
T ss_dssp EEECCCSCCS
T ss_pred EEEEcCCCCC
Confidence 9999999953
No 61
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=6.1e-12 Score=79.14 Aligned_cols=77 Identities=9% Similarity=0.130 Sum_probs=70.7
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHh---cCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCC
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCET---KSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGG 93 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~---~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~ 93 (98)
|+|.|++.+|..+.+.|.+++++..|++.+++. .|++++.++|+|.|+.|.++.|.+++++.+|++|.+.+....|.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 468888888999999999999999999999998 78999999999999999999999999999999999998775543
No 62
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.38 E-value=8.2e-12 Score=79.66 Aligned_cols=79 Identities=11% Similarity=0.218 Sum_probs=72.2
Q ss_pred CCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecC
Q 045424 12 KPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 12 ~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 91 (98)
.+...|.|.|+.. |..+.+.|.+++++..|++.+++..|++++.++|+|.|+.|.++.|.+++++.+|++|.+..+..+
T Consensus 21 ~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 21 GHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp --CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 3467899999987 888899999999999999999999999999999999999999999999999999999999987543
No 63
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.36 E-value=7e-14 Score=92.68 Aligned_cols=78 Identities=12% Similarity=0.258 Sum_probs=1.1
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCc
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGH 94 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~ 94 (98)
|.|.|++.+|..+.+.|.+++++..|+...++..|++++.++|+|.|..|.++.|.+++++++|++|++++++.||..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~ 78 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGII 78 (128)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCC
Confidence 467788888998999999999999999999999999999999999999999999999999999999999999999964
No 64
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.36 E-value=1.4e-11 Score=75.22 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=69.4
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHh---cCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCET---KSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~---~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
..|.|.|+..+|..+.+.|.+++++..|++..+++ .|++++.++|+|.|+.|.++.|.+++++.+|++|.+..+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 45889999888999999999999999999999998 7899999999999999999999999999999999998753
No 65
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.04 E-value=6.6e-14 Score=84.07 Aligned_cols=75 Identities=9% Similarity=0.112 Sum_probs=70.4
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecC
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 91 (98)
+.|.|++.+|..+.+.+.+++++..|++.+++..|++++.++|+|+|..|.++.|.+++++++|++|+++++..|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 457788888988899999999999999999999999999999999999999999999999999999999999877
No 66
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.33 E-value=1.2e-11 Score=76.51 Aligned_cols=75 Identities=9% Similarity=0.165 Sum_probs=71.1
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCee-cCCCCChhhcCCCCCCEEEEEce
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNR-FDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~-l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
-.+++|.|+...|..+.+.|.+++++..|++..++..|++++++|++|.|+. |.++.|.+++++.+|++|.+.++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 3678999999999999999999999999999999999999999999999999 99999999999999999999764
No 67
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=5.2e-12 Score=81.23 Aligned_cols=74 Identities=23% Similarity=0.263 Sum_probs=68.9
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceec
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~ 90 (98)
|.|.|+..+|..+.+.|.+++++..|+..++++.|++++.+||+|.|+.|.++.|.+++++++|++|.+.++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 57888888899999999999999999999999999999999999999999999999999999999999998753
No 68
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=1.8e-11 Score=78.83 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
.+.|.|+|++..|..+.+.|.+++++..|++..+++.|++++++||+|.|..|.++.|.+++++.+|++|++++
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 35599999998899999999999999999999999999999999999999999999999999999999999875
No 69
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.33 E-value=1.2e-11 Score=79.10 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=68.9
Q ss_pred CCCCCCCcEEEEEEccCCCEEEE--EEcCccHHHHHHHHH-HHhcCCCCcceeEEECCeecCCCCChhhcCC-CCCCEEE
Q 045424 9 NNKKPQHLINLIIKSQDGDKRFF--QFNHDVEIKRLLIKY-CETKSQPFKSTPFLINGNRFDYSKTADQLGL-KDGDEID 84 (98)
Q Consensus 9 ~~~~~~~~I~I~v~~~~g~~~~f--~Ik~~t~l~kL~~~y-~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~m-edgD~Id 84 (98)
.++.....|.|.|++..|..+.+ .+.+++++..|++.. ++..|++++++||+|.|+.|.++.|.+++++ ++|++|.
T Consensus 12 ~~~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~ 91 (98)
T 4a20_A 12 DDKMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTIT 91 (98)
T ss_dssp ------CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEE
T ss_pred cccCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEE
Confidence 45667888999999999986666 556999999999998 7888999999999999999999999999999 9999999
Q ss_pred EEcee
Q 045424 85 AMYHA 89 (98)
Q Consensus 85 v~~~q 89 (98)
+++++
T Consensus 92 lmvsk 96 (98)
T 4a20_A 92 VMIKP 96 (98)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99865
No 70
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.31 E-value=1.8e-13 Score=93.83 Aligned_cols=80 Identities=13% Similarity=0.314 Sum_probs=0.0
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCccc
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGHDH 96 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~~~ 96 (98)
|.|.|++.+|..+.+.|.+++++..|+...++..|++++.++|+|.|..|.++.|.+++++++|++|++.+++.||+-.|
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKR 80 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCcCc
Confidence 46778888898899999999999999999999999999999999999999999999999999999999999999997543
No 71
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.30 E-value=3.1e-11 Score=76.95 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=72.1
Q ss_pred CcEEEEEEccCC----CEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCC-CChhhcCCCCCCEEEEEcee
Q 045424 15 HLINLIIKSQDG----DKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYS-KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 15 ~~I~I~v~~~~g----~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~-~Tp~~l~medgD~Idv~~~q 89 (98)
..|.|.|+...+ ..+.+.|.+++++..|+...++..|++++.++++|.|+.|.++ .|.+++++.+|++|.+..+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 458888877544 6778999999999999999999999999999999999999877 69999999999999999999
Q ss_pred cCCCc
Q 045424 90 FGGGH 94 (98)
Q Consensus 90 ~GG~~ 94 (98)
.||.+
T Consensus 86 ~gg~~ 90 (102)
T 1v5o_A 86 NVGLR 90 (102)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 99854
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.30 E-value=2.2e-11 Score=80.92 Aligned_cols=76 Identities=12% Similarity=0.297 Sum_probs=71.9
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+.|.|++.+|..+.+.+.+++++..|+..++++.|++++.++|+|.|..|.++.|.+++++.+|++|++..++.||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 4678888889999999999999999999999999999999999999999999999999999999999999998876
No 73
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.29 E-value=1.7e-11 Score=84.04 Aligned_cols=78 Identities=12% Similarity=0.265 Sum_probs=68.8
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.|.|+..+|..+.+.|.+++++..|+...+++.|++++.++++|+|+.|.++.|..++++++|++|++.+++.||
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 446677777889999999999999999999999999999999999999999999999999999999999999999998
No 74
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.27 E-value=2.7e-11 Score=75.86 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=69.7
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCC-CChhhcCCCCCCEEEEEceecCC
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYS-KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~-~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...|+|+|+..+|..+.+.|.+++++..|+..++++. ++.+||+|.|+.|.++ .|.+++++++|++|++++++.+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 4569999998889889999999999999999999887 8899999999999999 99999999999999999987553
No 75
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=6.8e-12 Score=80.22 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=67.3
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
++-.|+|+|++ +|..+.+.|.+++++..|++..+++.|++++.+|++|.|+.|.++.|.+++++++|++|.+..+
T Consensus 25 ~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp ----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred CCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 45678889987 8888899999999999999999999999999999999999999999999999999999999865
No 76
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=1.3e-10 Score=74.75 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCCCcEEEEEEccC----CCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 12 KPQHLINLIIKSQD----GDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 12 ~~~~~I~I~v~~~~----g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
++.--.+|.|+..+ +..+.+.|.++++...|+...+++.|+++++++|+|.|+.|.++.|.+++++.+|.+| +++
T Consensus 11 ~~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl 89 (100)
T 1wju_A 11 RTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVL 89 (100)
T ss_dssp SCCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEE
T ss_pred hhcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEE
Confidence 34445567777666 6688999999999999999999999999999999999999999999999999999999 777
Q ss_pred eecCC
Q 045424 88 HAFGG 92 (98)
Q Consensus 88 ~q~GG 92 (98)
.+.|.
T Consensus 90 ~lrg~ 94 (100)
T 1wju_A 90 ELKQS 94 (100)
T ss_dssp CCCCC
T ss_pred EECCC
Confidence 66664
No 77
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.20 E-value=5e-11 Score=77.27 Aligned_cols=79 Identities=10% Similarity=0.088 Sum_probs=72.2
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC---------------cceeEEECCeecC-CCCChhhcCC
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF---------------KSTPFLINGNRFD-YSKTADQLGL 77 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~---------------~~~rF~fdG~~l~-~~~Tp~~l~m 77 (98)
+..|+|.|+..+|..+.+.|.+++++..|+.+.+++.++++ .+++|+|.|+.|. ++.|.+++++
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 45699999999999999999999999999999999998765 4689999999996 5699999999
Q ss_pred CCCCEEEEEceecCC
Q 045424 78 KDGDEIDAMYHAFGG 92 (98)
Q Consensus 78 edgD~Idv~~~q~GG 92 (98)
.+|++|.++.++.|.
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999999886
No 78
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=2.4e-10 Score=73.42 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=67.3
Q ss_pred CCcEEEEEEccCC---CEEEEEEc--------C-ccHHHHHHHHHHHhc--CCCCcc-eeEEECCeecCCCCChhhcCCC
Q 045424 14 QHLINLIIKSQDG---DKRFFQFN--------H-DVEIKRLLIKYCETK--SQPFKS-TPFLINGNRFDYSKTADQLGLK 78 (98)
Q Consensus 14 ~~~I~I~v~~~~g---~~~~f~Ik--------~-~t~l~kL~~~y~~~~--g~~~~~-~rF~fdG~~l~~~~Tp~~l~me 78 (98)
...|+|.|+..++ ..+.+.|. + ++++..|+...+++. |++++. ++|+|.|+.|.++.|.++++++
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 3457888887777 67778844 4 499999999999999 999999 9999999999999999999999
Q ss_pred CCCEEEEEceec
Q 045424 79 DGDEIDAMYHAF 90 (98)
Q Consensus 79 dgD~Idv~~~q~ 90 (98)
+|++|++..+..
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999987653
No 79
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.5e-10 Score=72.48 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=68.4
Q ss_pred EEEEEEccCCCEEEEEEc--CccHHHHHHHHH-HHhcCCCCcceeEEECCeecCCCCChhhcCC-CCCCEEEEEceecC
Q 045424 17 INLIIKSQDGDKRFFQFN--HDVEIKRLLIKY-CETKSQPFKSTPFLINGNRFDYSKTADQLGL-KDGDEIDAMYHAFG 91 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik--~~t~l~kL~~~y-~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~m-edgD~Idv~~~q~G 91 (98)
|.|.|++..|..+.+.|. +++++..|++.. +++.|++++++|++|.|+.|.++.|.+++++ .+|.+|.|.++.-=
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~ 80 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL 80 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCc
Confidence 678899999988888766 999999999999 9999999999999999999999999999999 79999999887543
No 80
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.14 E-value=3.1e-10 Score=75.50 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=72.4
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHH------hcCC--CCcceeEEECCeecCCCCChhhcCCCCCC--E
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCE------TKSQ--PFKSTPFLINGNRFDYSKTADQLGLKDGD--E 82 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~------~~g~--~~~~~rF~fdG~~l~~~~Tp~~l~medgD--~ 82 (98)
+...|.|+|+...|....|.|.+++++..|++..++ +.|+ +++++||+|.|+.|.++.|.+++++.+|+ +
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 456799999998999999999999999999999998 5677 47999999999999999999999999888 6
Q ss_pred EEEEceecCCC
Q 045424 83 IDAMYHAFGGG 93 (98)
Q Consensus 83 Idv~~~q~GG~ 93 (98)
|++.++..++.
T Consensus 94 lhlv~r~~~~~ 104 (125)
T 2gow_A 94 MHLVARETLPE 104 (125)
T ss_dssp EEEEECSCCSS
T ss_pred EEEEecCCCCc
Confidence 78888887754
No 81
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.12 E-value=2.3e-09 Score=70.51 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=69.4
Q ss_pred CCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHH------hcCC--CCcceeEEECCeecCCCCChhhcCCCCCCE-
Q 045424 12 KPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCE------TKSQ--PFKSTPFLINGNRFDYSKTADQLGLKDGDE- 82 (98)
Q Consensus 12 ~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~------~~g~--~~~~~rF~fdG~~l~~~~Tp~~l~medgD~- 82 (98)
.|.+.|.|+|+...|..+.|.|.+++++..|++..++ +.++ +++++||+|.|+.|.++.|.+++++..++.
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~ 91 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 91 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 3678899999998999999999999999999999998 4564 589999999999999999999999988864
Q ss_pred -EEEEceecC
Q 045424 83 -IDAMYHAFG 91 (98)
Q Consensus 83 -Idv~~~q~G 91 (98)
|++.++..+
T Consensus 92 tlhLvlr~~~ 101 (116)
T 1wgh_A 92 VMHLVARETL 101 (116)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEccCCC
Confidence 566665543
No 82
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.10 E-value=8.9e-10 Score=71.45 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=65.1
Q ss_pred CCCCCCCc--EEEEEEccCC--CEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCC-CCCCEE
Q 045424 9 NNKKPQHL--INLIIKSQDG--DKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGL-KDGDEI 83 (98)
Q Consensus 9 ~~~~~~~~--I~I~v~~~~g--~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~m-edgD~I 83 (98)
+..-|... +.|.|.+..+ ..+.+.|.+++++..|++...+++|++++..|++|.|+.+.++.|.+++++ ++|++|
T Consensus 15 ~~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~ 94 (105)
T 4dbg_A 15 PEVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSA 94 (105)
T ss_dssp -----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEE
T ss_pred CCcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEE
Confidence 33345444 4555566553 578999999999999999999999999999999999998899999999999 699999
Q ss_pred EEEce
Q 045424 84 DAMYH 88 (98)
Q Consensus 84 dv~~~ 88 (98)
++++-
T Consensus 95 hL~l~ 99 (105)
T 4dbg_A 95 YLYLL 99 (105)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99874
No 83
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.10 E-value=4.1e-10 Score=70.97 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=69.1
Q ss_pred CCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 9 NNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 9 ~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
+...+...|+|+|+. .+..+.+.|.+++++..|+...++..|++++.++++|.|..| ++.|.+++++.+|++|.++..
T Consensus 10 ~~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 10 GGGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred CCCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 334456789999984 577888999999999999999999999999999999999999 556999999999999998765
Q ss_pred e
Q 045424 89 A 89 (98)
Q Consensus 89 q 89 (98)
.
T Consensus 88 ~ 88 (95)
T 1v86_A 88 T 88 (95)
T ss_dssp S
T ss_pred c
Confidence 4
No 84
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.09 E-value=8e-10 Score=68.27 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=61.8
Q ss_pred ccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 23 SQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 23 ~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
..+|..+.+.+.+++++..|+...++..|++++.++++|.|+.|.++.|.+++++.+|++|.+...
T Consensus 18 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 18 KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 347888899999999999999999999999999999999999999999999999999999998764
No 85
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.09 E-value=9.9e-10 Score=73.29 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=71.5
Q ss_pred CCcEEEEEEccCCCEE-EEEEcCccHHHHHHHHHH-----HhcCCCC--cceeEEECCeecCCCCChhhcCCCCCC----
Q 045424 14 QHLINLIIKSQDGDKR-FFQFNHDVEIKRLLIKYC-----ETKSQPF--KSTPFLINGNRFDYSKTADQLGLKDGD---- 81 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~-~f~Ik~~t~l~kL~~~y~-----~~~g~~~--~~~rF~fdG~~l~~~~Tp~~l~medgD---- 81 (98)
.+.+.|+|+..+|..+ .+.+.+++++..|++... ++.|+++ +++||+|.|+.|.++.|.+++++.+|+
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 3789999999999888 699999999999999995 4456765 899999999999999999999999994
Q ss_pred --EEEEEceecCCCc
Q 045424 82 --EIDAMYHAFGGGH 94 (98)
Q Consensus 82 --~Idv~~~q~GG~~ 94 (98)
+|++.++..||.-
T Consensus 94 v~tmhlVlrl~g~~k 108 (126)
T 1se9_A 94 VTTMHVIIQAPVTEK 108 (126)
T ss_dssp CEEEEEEECCCSSCC
T ss_pred cEEEEEEeccCCccc
Confidence 6899999998853
No 86
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.06 E-value=1.3e-09 Score=73.54 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=70.5
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEE-E-CCeecCCCCChhhcCCCCCCEEEEEcee-cCC
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFL-I-NGNRFDYSKTADQLGLKDGDEIDAMYHA-FGG 92 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~-f-dG~~l~~~~Tp~~l~medgD~Idv~~~q-~GG 92 (98)
+.|.|+..+|..+.+.+.+++++..|+...++..|+++++++|+ | .|..|.++.|.+++++.+|++|.+.+++ .|+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 67888888999999999999999999999999999999999999 9 7999999999999999999999999884 443
No 87
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.06 E-value=1.4e-09 Score=71.76 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=67.1
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCC-------CCCEEEEEcee
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLK-------DGDEIDAMYHA 89 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~me-------dgD~Idv~~~q 89 (98)
|.|+++. ....+.+.|.+++++..|+...+++.|+++++.||+|+|+.|.++.|.+++++. ++.+|++.++
T Consensus 3 mfl~ir~-~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr- 80 (118)
T 2fnj_B 3 VFLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR- 80 (118)
T ss_dssp EEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-
T ss_pred EEEEEec-CCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-
Confidence 5566654 223578999999999999999999999999999999999999999999999999 6999999999
Q ss_pred cCCCc
Q 045424 90 FGGGH 94 (98)
Q Consensus 90 ~GG~~ 94 (98)
.||.+
T Consensus 81 ~~g~f 85 (118)
T 2fnj_B 81 ADDTF 85 (118)
T ss_dssp SSSCB
T ss_pred CCCce
Confidence 67654
No 88
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.05 E-value=2.3e-09 Score=66.60 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=66.6
Q ss_pred CcEEEEEEccCCCEEEEEEcCc-----cHHHHHHHHHHHhcCCCCcceeEEECCeecCC-CCChhhcCCCCCCEEEEEce
Q 045424 15 HLINLIIKSQDGDKRFFQFNHD-----VEIKRLLIKYCETKSQPFKSTPFLINGNRFDY-SKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~-----t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~-~~Tp~~l~medgD~Idv~~~ 88 (98)
..|+|+|++ .|....+.+.++ .++..|+...+++.|++++.++++|.|..|.+ +.|.+++++.+|++|.+...
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 469999998 577788999995 99999999999999999999999999999998 55899999999999999865
Q ss_pred e
Q 045424 89 A 89 (98)
Q Consensus 89 q 89 (98)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.04 E-value=1e-09 Score=70.11 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=63.8
Q ss_pred CCcEEEEEEccCCC--EEEEEEcCccHHHHHHHHHHHhc-CCC-CcceeEEECCeecCCCCChhhc--CCCCCCEEEEE
Q 045424 14 QHLINLIIKSQDGD--KRFFQFNHDVEIKRLLIKYCETK-SQP-FKSTPFLINGNRFDYSKTADQL--GLKDGDEIDAM 86 (98)
Q Consensus 14 ~~~I~I~v~~~~g~--~~~f~Ik~~t~l~kL~~~y~~~~-g~~-~~~~rF~fdG~~l~~~~Tp~~l--~medgD~Idv~ 86 (98)
...|+|+|++.++. .+.+.+.+++++..|++..+++. |.+ ++++||+|.|+.|.++.|.+++ ++++|.+|++.
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 46799999998887 57888999999999999999864 555 5999999999999999999999 99999999863
No 90
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.03 E-value=3.3e-09 Score=67.21 Aligned_cols=74 Identities=9% Similarity=0.102 Sum_probs=65.9
Q ss_pred CCCcEEEEEEccCCC--EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEEC--Ce---ec-CCCCChhhcCCCCCCEEE
Q 045424 13 PQHLINLIIKSQDGD--KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLIN--GN---RF-DYSKTADQLGLKDGDEID 84 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~--~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd--G~---~l-~~~~Tp~~l~medgD~Id 84 (98)
+...|+|.|.+..+. .+.+++.+++++..|+....++.|++++++|++|. |. .| .++.|..++++++|++|.
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 578999999986654 68999999999999999999999999999999997 55 44 788999999999999998
Q ss_pred EE
Q 045424 85 AM 86 (98)
Q Consensus 85 v~ 86 (98)
+.
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 91
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.00 E-value=1.8e-09 Score=67.28 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=66.2
Q ss_pred CcEEEEEEccCCCEEEE-EEcCccHHHHHHHHHHHhcCCCCcceeEE---ECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 15 HLINLIIKSQDGDKRFF-QFNHDVEIKRLLIKYCETKSQPFKSTPFL---INGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f-~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~---fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
..|+|+|+. .|..+.+ .|.+++++..|+...++..|+++++++++ |.|..|.++.|.+++++.+|++|.+...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 457788875 6777788 89999999999999999999999999999 9999999999999999999999988754
No 92
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.97 E-value=2.2e-09 Score=67.83 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=65.6
Q ss_pred CcEEEEEEccCCCEE-EEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 15 HLINLIIKSQDGDKR-FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~-~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
..|+|+|+. .|..+ .+.|..++++..|+...++..|++++++|++|.|..|.++ |.+++++.+|++|.+...
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 568999985 57777 5999999999999999999999999999999999999988 999999999999988654
No 93
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.96 E-value=5.1e-09 Score=78.72 Aligned_cols=76 Identities=9% Similarity=0.238 Sum_probs=70.7
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
...|+|.|+..+|..+.+.|.+++++..|++..+++.|++++++||+|.|+.|.++.|.+++++.+|++|++.+++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 4678899999889999999999999999999999999999999999999999999999999999999999999875
No 94
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.93 E-value=8.5e-09 Score=68.09 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=66.2
Q ss_pred EEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCC-------CCEEEEEceec
Q 045424 18 NLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKD-------GDEIDAMYHAF 90 (98)
Q Consensus 18 ~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~med-------gD~Idv~~~q~ 90 (98)
-|+|+. ....+.+.+++++++..|+....++.|+++++.||+|+|+.|.++.|.+++++.+ +.+|.+.++.
T Consensus 4 Fl~Ikr-~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~- 81 (118)
T 4ajy_B 4 FLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA- 81 (118)
T ss_dssp EEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECC-
T ss_pred EEEEec-CCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEec-
Confidence 345543 3447788999999999999999999999999999999999999999999999999 9999999996
Q ss_pred CCCc
Q 045424 91 GGGH 94 (98)
Q Consensus 91 GG~~ 94 (98)
||.+
T Consensus 82 ~~~f 85 (118)
T 4ajy_B 82 DDTF 85 (118)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 5543
No 95
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.91 E-value=1.5e-10 Score=81.90 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=2.4
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCccc
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGHDH 96 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~~~ 96 (98)
|.|.|++.+|..+.+.|.+++++..|+...++..|+++++++|+|.|..|.++.|.+ ++++|++.+++.||..+|
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~kr 75 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKKKK 75 (189)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcccc
Confidence 457788788999999999999999999999999999999999999999999988877 999999999999997654
No 96
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.90 E-value=3.7e-09 Score=67.89 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=65.5
Q ss_pred CcEEEEEEccCCCEEEEEEc-CccHHHHHHHHHHHhcCCCCcceeEEECCe-----------e----cCCCCChhhcCCC
Q 045424 15 HLINLIIKSQDGDKRFFQFN-HDVEIKRLLIKYCETKSQPFKSTPFLINGN-----------R----FDYSKTADQLGLK 78 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik-~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~-----------~----l~~~~Tp~~l~me 78 (98)
..|.|+|++.+|.. .+.|. +++++..|++..+++.|+++...+|.|+|. . +.++.|..++++.
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 34889999999965 78899 999999999999999999999999999987 4 4788899999999
Q ss_pred CCCEEEEEce
Q 045424 79 DGDEIDAMYH 88 (98)
Q Consensus 79 dgD~Idv~~~ 88 (98)
+|++|.+...
T Consensus 85 ~G~~L~l~~~ 94 (107)
T 1wf9_A 85 HGSMVYLAYE 94 (107)
T ss_dssp TTCEEECCCS
T ss_pred CCCEEEEEeC
Confidence 9999988765
No 97
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.88 E-value=1.2e-08 Score=64.94 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=64.4
Q ss_pred CCcEEEEEEccCC--CEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCe---e----cCCCCChhhcCCCCCCEEE
Q 045424 14 QHLINLIIKSQDG--DKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGN---R----FDYSKTADQLGLKDGDEID 84 (98)
Q Consensus 14 ~~~I~I~v~~~~g--~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~---~----l~~~~Tp~~l~medgD~Id 84 (98)
+..|+|.|.+... ..+.++|.++.++..|+....++.|++++++|++|.|. . +.++.|..++++++|++|.
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih 91 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH 91 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence 5789999987544 36899999999999999999999999999999999873 3 4778899999999999998
Q ss_pred EE
Q 045424 85 AM 86 (98)
Q Consensus 85 v~ 86 (98)
+.
T Consensus 92 lv 93 (97)
T 2kj6_A 92 II 93 (97)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 98
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.82 E-value=3.5e-08 Score=64.68 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=64.8
Q ss_pred CCcEEEEEEccCCC-EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECC---e---e-cCCCCChhhcCCCCCCEEEE
Q 045424 14 QHLINLIIKSQDGD-KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLING---N---R-FDYSKTADQLGLKDGDEIDA 85 (98)
Q Consensus 14 ~~~I~I~v~~~~g~-~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG---~---~-l~~~~Tp~~l~medgD~Idv 85 (98)
+..|+|.|.+..+. ...++|.++.++..|+...+++.|++++++|++|.| . . +.++.|..++++++|++|+|
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 45799999886553 588999999999999999999999999999999976 3 2 37888999999999999998
Q ss_pred Ec
Q 045424 86 MY 87 (98)
Q Consensus 86 ~~ 87 (98)
..
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 99
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.81 E-value=2.1e-08 Score=62.89 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=63.7
Q ss_pred CcEEEEEEccCCC-EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECC---ee----cCCCCChhhcCCCCCCEEEEE
Q 045424 15 HLINLIIKSQDGD-KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLING---NR----FDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 15 ~~I~I~v~~~~g~-~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG---~~----l~~~~Tp~~l~medgD~Idv~ 86 (98)
..|+|.|.+.... ...+++.+++++..|+...+++.|++++++|++|.| .. +.++.|..++++++|++|+|.
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 3489999875543 588999999999999999999999999999999976 43 478899999999999999986
Q ss_pred c
Q 045424 87 Y 87 (98)
Q Consensus 87 ~ 87 (98)
-
T Consensus 86 d 86 (95)
T 1v6e_A 86 D 86 (95)
T ss_dssp C
T ss_pred E
Confidence 5
No 100
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.80 E-value=8.5e-09 Score=79.09 Aligned_cols=79 Identities=10% Similarity=0.140 Sum_probs=71.1
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHH---hcCCCCcceeEEECCeecCCCCChhhcCCCCCCEE-EEEceec
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCE---TKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEI-DAMYHAF 90 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~---~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~I-dv~~~q~ 90 (98)
..|.|+|+...|..+.+.|.+++++..|+...++ +.|++.+.+||+|.|+.|.++.|..++++.+|++| .+..+..
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 4578888888899999999999999999999999 56799999999999999999999999999999998 7777777
Q ss_pred CCC
Q 045424 91 GGG 93 (98)
Q Consensus 91 GG~ 93 (98)
||.
T Consensus 86 ~~~ 88 (368)
T 1oqy_A 86 AGQ 88 (368)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 101
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.77 E-value=4.7e-08 Score=60.77 Aligned_cols=73 Identities=7% Similarity=0.003 Sum_probs=62.4
Q ss_pred cEEEEEEcc--CCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE-------CCeecCCCCChhhcCCCCCCEEEEE
Q 045424 16 LINLIIKSQ--DGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI-------NGNRFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 16 ~I~I~v~~~--~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f-------dG~~l~~~~Tp~~l~medgD~Idv~ 86 (98)
.|+|.|... .......++.++.++..|+....++.|++++++|++| .|..+.++.|..+++++||.+|++.
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 356666532 3455689999999999999999999999999999996 4888999999999999999999987
Q ss_pred ce
Q 045424 87 YH 88 (98)
Q Consensus 87 ~~ 88 (98)
-.
T Consensus 82 d~ 83 (86)
T 4b6w_A 82 DL 83 (86)
T ss_dssp EC
T ss_pred eC
Confidence 43
No 102
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=2.7e-08 Score=62.02 Aligned_cols=71 Identities=8% Similarity=0.119 Sum_probs=62.8
Q ss_pred CcEEEEEEccCCCEE--EE-EEcCccHHHHHHHHHHHh-cCCCCcceeEEEC--CeecCCCCChhhcCCCCCCEEEE
Q 045424 15 HLINLIIKSQDGDKR--FF-QFNHDVEIKRLLIKYCET-KSQPFKSTPFLIN--GNRFDYSKTADQLGLKDGDEIDA 85 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~--~f-~Ik~~t~l~kL~~~y~~~-~g~~~~~~rF~fd--G~~l~~~~Tp~~l~medgD~Idv 85 (98)
..|.|.|++..|... .+ .|.+++++..|++.+++. .|++++++||+|. |..|.++.|.+++++.+|.+|.+
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 358899998877654 47 899999999999999994 7999999999987 99999999999999999999865
No 103
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.72 E-value=1.6e-08 Score=62.27 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=60.8
Q ss_pred EEEEEEccCCCEEEEE-EcCccHHHHHHHHHHHhcCCCCcceeEEEC--CeecC---CCCChhhcCCCCCCEEEEEce
Q 045424 17 INLIIKSQDGDKRFFQ-FNHDVEIKRLLIKYCETKSQPFKSTPFLIN--GNRFD---YSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~-Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd--G~~l~---~~~Tp~~l~medgD~Idv~~~ 88 (98)
|.|+|++.+|..+ +. +..++++..|+...+++.|++++.++|+|. |+.+. ++.|.+++++.+|++|.|...
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 4678888889654 77 899999999999999999999999999986 46774 578999999999999988754
No 104
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.62 E-value=3.1e-07 Score=57.62 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=65.3
Q ss_pred CCCcEEEEEEcc---CCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECC-------eec-CCCCChhhcCCCCCC
Q 045424 13 PQHLINLIIKSQ---DGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLING-------NRF-DYSKTADQLGLKDGD 81 (98)
Q Consensus 13 ~~~~I~I~v~~~---~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG-------~~l-~~~~Tp~~l~medgD 81 (98)
-+..|+|.|.+. ++..+..++.++.++.+|+...++.+|+++..+++.|.+ ..| .+..|..+++++||+
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 356799988863 677889999999999999999999999999999998863 223 567899999999999
Q ss_pred EEEEEcee
Q 045424 82 EIDAMYHA 89 (98)
Q Consensus 82 ~Idv~~~q 89 (98)
+|.|....
T Consensus 86 ~I~V~d~~ 93 (97)
T 1wjn_A 86 CLLVRWSG 93 (97)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99997743
No 105
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=1.2e-06 Score=55.92 Aligned_cols=72 Identities=6% Similarity=0.047 Sum_probs=61.1
Q ss_pred cEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE-CCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 16 LINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI-NGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
.+.++++. .|..+.+.|.+++++..|+...+++.|+++++.+++| .|.++.++.|..++++..|++|.+.+.
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEec
Confidence 34555554 7888899999999999999999999999999999986 333488889999999999999988654
No 106
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.40 E-value=7.4e-07 Score=67.03 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=65.4
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEE---ECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFL---INGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~---fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
.+.|+|+|+. .|..+.+.|.+++++..|+...++..|+++++++++ |.|..+.++.|.+++++.+|.+|.++-.
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 4568888886 688889999999999999999999999999999999 8999999999999999999999988744
No 107
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.08 E-value=2.8e-06 Score=52.01 Aligned_cols=71 Identities=21% Similarity=0.187 Sum_probs=56.1
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCee-----cCCCCChhhcCCCCCCEEEEE
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNR-----FDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~-----l~~~~Tp~~l~medgD~Idv~ 86 (98)
..+.|+|++.+|. ..+.+.+++++..|++..++..+++.+.+.+.+.-.+ ..++.|.+++++..||.|.+.
T Consensus 3 ~~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 3477999999984 4566889999999999999999998766555443333 347889999999999998764
No 108
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.03 E-value=2.8e-05 Score=48.98 Aligned_cols=72 Identities=8% Similarity=0.113 Sum_probs=67.6
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
+.|.|...+++...++|.++++|..+.+.-|+++|++.++..+.|++..|+.+..-.=.||-+|-.+++...
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 478888899999999999999999999999999999999999999999999999999999999999998653
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.61 E-value=0.00017 Score=44.47 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=60.8
Q ss_pred CcEEEEEEc--cCCCEEEEEEcCccHHHHHHHHHHHhcCCCC-----cceeEEECCeecCCCCChhhcCCCCCCEEEE
Q 045424 15 HLINLIIKS--QDGDKRFFQFNHDVEIKRLLIKYCETKSQPF-----KSTPFLINGNRFDYSKTADQLGLKDGDEIDA 85 (98)
Q Consensus 15 ~~I~I~v~~--~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~-----~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv 85 (98)
.+|+|.+.- ..++.+-++|...-++++|.+...+.++++. ..+|..-.|..|.++++.++.++.|||.|++
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 467777763 6788899999999999999999999999864 3566666799999999999999999999986
No 110
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.32 E-value=0.0038 Score=39.86 Aligned_cols=84 Identities=14% Similarity=0.187 Sum_probs=63.9
Q ss_pred CCCCCCCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE--CCeecC---CCCChhhcCCCC
Q 045424 5 SSSKNNKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI--NGNRFD---YSKTADQLGLKD 79 (98)
Q Consensus 5 ~~~~~~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f--dG~~l~---~~~Tp~~l~med 79 (98)
+++.+........+|.|+-++|..+.-++..+++++.|++-.....+.+...+.|.- =-+.+. .+.|.++++|-.
T Consensus 2 ~~~~p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~p 81 (109)
T 2dzk_A 2 SSGSSGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAP 81 (109)
T ss_dssp CSCCCCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSS
T ss_pred CCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCC
Confidence 345555666677888999899999999999999999999877666666556666664 233454 467999999999
Q ss_pred CCEEEEEce
Q 045424 80 GDEIDAMYH 88 (98)
Q Consensus 80 gD~Idv~~~ 88 (98)
..++.|...
T Consensus 82 sa~L~v~~~ 90 (109)
T 2dzk_A 82 SASVVLLPA 90 (109)
T ss_dssp EEEEEEECC
T ss_pred ceEEEEEEC
Confidence 988877643
No 111
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.27 E-value=0.0013 Score=41.46 Aligned_cols=52 Identities=6% Similarity=-0.058 Sum_probs=44.1
Q ss_pred cEEEEEEccC-CCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecC
Q 045424 16 LINLIIKSQD-GDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFD 67 (98)
Q Consensus 16 ~I~I~v~~~~-g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~ 67 (98)
...|+|-+.. +...+|.|.+++++..++++.+++.|+++.+.+++|.|+.+.
T Consensus 12 rkvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 12 RMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred ceeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 3456776654 456789999999999999999999999999999999997654
No 112
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.0017 Score=40.49 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=60.5
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEEC---CeecCCCCChhhcCCCC
Q 045424 10 NKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLIN---GNRFDYSKTADQLGLKD 79 (98)
Q Consensus 10 ~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd---G~~l~~~~Tp~~l~med 79 (98)
.+-|...+.+.|.-...+....+|.|..||+.|+-+.|++.++++..+.|+-| ++.|+-+.+..+|+|..
T Consensus 4 ~~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 4 GSSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred CCCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 34566888888876666677899999999999999999999999999888875 67888999999999986
No 113
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.20 E-value=0.0043 Score=40.57 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=56.7
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE--CCeec---CCCCChhhcCCCCCCEEEEE
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI--NGNRF---DYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f--dG~~l---~~~~Tp~~l~medgD~Idv~ 86 (98)
.+.++|.|+-++|..+.-++..+++|..|++..... +.+...+.|.- =.+.+ ..+.|.++++|-....+.|.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 577899999999999999999999999999866554 66666777764 35556 34789999999987766554
No 114
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.17 E-value=0.0051 Score=37.20 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=57.3
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE--CCeec---CCCCChhhcCCCCCCEEEEE
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI--NGNRF---DYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f--dG~~l---~~~~Tp~~l~medgD~Idv~ 86 (98)
.+..+|.|+.++|..+.-+...+++++.|++.... .+.+...+.|.- =.+.+ +.+.|.++++|...+++-|-
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 35677888889999998899999999999985544 666777788774 35566 46789999999999988774
No 115
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=97.12 E-value=0.0022 Score=45.39 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=57.4
Q ss_pred EEEEEEcCccHHHHHHHHHHHhcCCCCc-ceeEEE-C----CeecCC-CCChhhcCCCCCCEEEEEceecCCCcc
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETKSQPFK-STPFLI-N----GNRFDY-SKTADQLGLKDGDEIDAMYHAFGGGHD 95 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~g~~~~-~~rF~f-d----G~~l~~-~~Tp~~l~medgD~Idv~~~q~GG~~~ 95 (98)
.+++.+.+.+++..|++.-|+.++++.+ .+|++. + ...|.. +.|.+++++.+|+.|-+-++...|.|-
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~WP 215 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWP 215 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCCC
Confidence 4678899999999999999999999886 799985 2 346666 569999999999999999998888763
No 116
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=97.09 E-value=0.0031 Score=45.02 Aligned_cols=79 Identities=13% Similarity=0.094 Sum_probs=62.5
Q ss_pred EEEEEEccCC--CEEEEEEcCccHHHHHHHHHHHhcCCCCc-ceeEEE-C----CeecCC-CCChhhcCCCCCCEEEEEc
Q 045424 17 INLIIKSQDG--DKRFFQFNHDVEIKRLLIKYCETKSQPFK-STPFLI-N----GNRFDY-SKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 17 I~I~v~~~~g--~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~-~~rF~f-d----G~~l~~-~~Tp~~l~medgD~Idv~~ 87 (98)
+.+++..... ..+++.+.+.+++..|++.-|+.++++.+ ++|++. + ...|.. +.|.+++++.+|+.|-+-+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 4455543222 23568889999999999999999999886 799997 2 346665 6899999999999999988
Q ss_pred eecCCCcc
Q 045424 88 HAFGGGHD 95 (98)
Q Consensus 88 ~q~GG~~~ 95 (98)
+-..|.|-
T Consensus 220 r~~dg~WP 227 (231)
T 3jyu_A 220 QNEDGTWP 227 (231)
T ss_dssp CCTTSCCC
T ss_pred ecCCCCCC
Confidence 88777664
No 117
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.72 E-value=0.02 Score=36.40 Aligned_cols=72 Identities=7% Similarity=0.080 Sum_probs=55.9
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEEC--CeecC--CCCChhhcCCCCCCEEEEE
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLIN--GNRFD--YSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd--G~~l~--~~~Tp~~l~medgD~Idv~ 86 (98)
...++|.|+-.+|..+.-++..+++++.|++... ..+.....+.|.-. .+.+. .+.|.++++|....++.|.
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~-~~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMM-KVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHH-HHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-hcCCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 4679999999999999888999999999987554 44555566776542 44554 5789999999999888664
No 118
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.54 E-value=0.032 Score=32.56 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=49.1
Q ss_pred cEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 16 LINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
.++|+|-...+ ...+.+...+++..|.+.. +++...+.+..||+.+..+. -+.+||.|+++.--.||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 36777755333 2356677778999888654 67777888999999988765 79999999998654443
No 119
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.53 E-value=0.012 Score=39.02 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=55.5
Q ss_pred EEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCc-cee------------------------------------EE
Q 045424 18 NLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFK-STP------------------------------------FL 60 (98)
Q Consensus 18 ~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~-~~r------------------------------------F~ 60 (98)
.|+|+-.||...++.|..+.+...++...|.+.|+... .+- +.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 46777789999999999999999999999999999743 222 22
Q ss_pred E--CCeecCCCCChhhcCCCCCCEEEEE
Q 045424 61 I--NGNRFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 61 f--dG~~l~~~~Tp~~l~medgD~Idv~ 86 (98)
. .+..|+++.|.-+.|+.++|++-..
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 2 1367888999999999999987553
No 120
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=96.43 E-value=0.019 Score=33.71 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=43.0
Q ss_pred EEEcCccHHHHHHHHHHHhcCCCC--cceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 31 FQFNHDVEIKRLLIKYCETKSQPF--KSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 31 f~Ik~~t~l~kL~~~y~~~~g~~~--~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+.+ ...++..|.+..+.+.++.. ..+.+..||+.+...+| -+.|||+|.++.--.||
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~----~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNT----PLKDGDVISLLPPVCGG 74 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTC----CCCTTCEEEEECCBCCC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCc----CCCCCCEEEEECCCCCC
Confidence 445 56899999999987655432 67889999999765444 59999999998766665
No 121
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.41 E-value=0.014 Score=34.91 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=47.7
Q ss_pred EEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCC
Q 045424 17 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGG 93 (98)
Q Consensus 17 I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~ 93 (98)
|+|++. ......+.+...+++..|. +..|++.+.+....||+.+..++ +-+||.|++..---||-
T Consensus 3 v~Vkl~--g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~~ 67 (74)
T 2l32_A 3 VTVEVV--GEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGGL 67 (74)
T ss_dssp EEEECS--SSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC-
T ss_pred EEEEEe--CccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeecccc
Confidence 455553 3345568888888988886 57899998998888999887777 23599999976544553
No 122
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=96.31 E-value=0.0052 Score=36.64 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=46.7
Q ss_pred CCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCccc
Q 045424 25 DGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGHDH 96 (98)
Q Consensus 25 ~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~~~ 96 (98)
+|....+ ..+++..|.+ ..+++...+-...||+-|..+ .-++.-|.|||.|+++.---||.-+|
T Consensus 6 NG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG~~~~ 69 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGGLEHH 69 (73)
T ss_dssp TTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCCCSCS
T ss_pred CCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCCcccc
Confidence 5665554 5678888875 568888888899999877543 34455799999999988766675544
No 123
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=96.01 E-value=0.009 Score=36.06 Aligned_cols=67 Identities=21% Similarity=0.348 Sum_probs=47.4
Q ss_pred CCCEEEEEEcCccHHHHHHHHHHHhcCCC-CcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCccc
Q 045424 25 DGDKRFFQFNHDVEIKRLLIKYCETKSQP-FKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGHDH 96 (98)
Q Consensus 25 ~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~-~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~~~ 96 (98)
+|+...+.....+++..|.+. .+++ ...+-...||+-|..+ .-++.-|.|||.|+++.---||..-|
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~~~~ 73 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGKLEH 73 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSCCCC
T ss_pred CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCCchh
Confidence 566555422156788888764 4677 7778899999877554 45566799999999987766775443
No 124
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=95.84 E-value=0.017 Score=35.66 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=45.6
Q ss_pred CCcEEEEEEccCCCEEEEEEcCc-cHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHD-VEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~-t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...|+|.| +|+.+. +... .++..|.+.. +++...+.+..||+.+..+ .-++.-|.|||.|+++.- +||
T Consensus 18 ~~~M~I~v---NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~-V~G 86 (87)
T 1tyg_B 18 GGRHMLQL---NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHF-VGG 86 (87)
T ss_dssp ----CEEE---TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEE-CCC
T ss_pred CcceEEEE---CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcc-ccc
Confidence 34566666 666544 4555 7888888654 6777788899999988654 223345999999999874 444
No 125
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=95.13 E-value=0.021 Score=37.58 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=32.5
Q ss_pred EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEEC
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLIN 62 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd 62 (98)
...|+|.++++|..|+..+++.+|++.+.+|||.=
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 35799999999999999999999999999999983
No 126
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.12 E-value=0.084 Score=32.40 Aligned_cols=45 Identities=4% Similarity=-0.022 Sum_probs=41.2
Q ss_pred cEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEEC
Q 045424 16 LINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLIN 62 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd 62 (98)
.++|||+.. ..+.++|.+..++..|.+..+++.+++.+.++|.|.
T Consensus 5 ~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk 49 (83)
T 1oey_A 5 AYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR 49 (83)
T ss_dssp CEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred cEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEee
Confidence 489999986 689999999999999999999999999999999984
No 127
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=95.06 E-value=0.046 Score=31.38 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=42.7
Q ss_pred CCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 25 DGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 25 ~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+|..+. +...+++..|.+.. +++...+.+..||+.+... .-.+.-+.|||.|+++.--.||
T Consensus 6 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQAMQ--CAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCEEC--CCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CCEEEE--cCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 666544 45667888888765 5677788899999988653 1123458999999998754443
No 128
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=94.52 E-value=0.029 Score=35.46 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=41.1
Q ss_pred EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEEC----CeecC--------------CCCChhhcCCCCCCEEEEE
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLIN----GNRFD--------------YSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd----G~~l~--------------~~~Tp~~l~medgD~Idv~ 86 (98)
.+.+.|.++.+|+.+++..|++..+...+-.+... |..|. -+.+..+|+++||++|.|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 45678899999999999999965444332222222 33322 2456789999999999885
No 129
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.39 E-value=0.26 Score=29.44 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=46.2
Q ss_pred CEEEEEEcCccHHHHHHHHHHHhcC-C-----C-----CcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 27 DKRFFQFNHDVEIKRLLIKYCETKS-Q-----P-----FKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 27 ~~~~f~Ik~~t~l~kL~~~y~~~~g-~-----~-----~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
.+..+.+....++..|++..+.++. + + ...+.+..||+.+.. + --+.|||+|.++.--.||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-~----~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-G----EATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-T----SBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-C----cccCCCCEEEEECCCCCC
Confidence 5677888777899999999888763 1 1 123788889999875 3 349999999998876665
No 130
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.24 E-value=0.35 Score=29.58 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=43.6
Q ss_pred CEEEEEEcCccHHHHHHHHHHHhcC-C----------CCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 27 DKRFFQFNHDVEIKRLLIKYCETKS-Q----------PFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 27 ~~~~f~Ik~~t~l~kL~~~y~~~~g-~----------~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
....+.+...+++..|++..+.++. + ....+.+..||+.+.. +.-+.|||+|.++.--.||
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEESCC---
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEECCCCCC
Confidence 4667888778899999999887642 1 1245778889998863 4469999999987754444
No 131
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=94.01 E-value=0.14 Score=29.90 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=41.5
Q ss_pred EEEEEEcCccHHHHHHHHHHHhcC-----CCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETKS-----QPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~g-----~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...+. ....++..|++..+.++. +....+.+..||+.+.. +--+.|||+|.++.--.||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 44554 456789999988876542 22345778899998852 4469999999998765554
No 132
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.96 E-value=0.69 Score=29.91 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=51.0
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHh-cCCCCcceeEEE--CCeecC-CCCChhhcCCCCCCEEE
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCET-KSQPFKSTPFLI--NGNRFD-YSKTADQLGLKDGDEID 84 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~-~g~~~~~~rF~f--dG~~l~-~~~Tp~~l~medgD~Id 84 (98)
...+|.|+-.||..+.-++..++++..|++-.... .+.....+.|.. =.+.+. .+.|.++++|...-+|.
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 45666666689999999999999999999876554 233345566654 355565 37899999999865554
No 133
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=93.93 E-value=0.11 Score=30.25 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=43.0
Q ss_pred CEEEEEEcCccHHHHHHHHHHHhcCCCCcce--eEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 27 DKRFFQFNHDVEIKRLLIKYCETKSQPFKST--PFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 27 ~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~--rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
....+.+....++..|.+....++. ....+ .+..||+.+..+ .-+.|||.|+++.--.||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 3456666677899999998877642 11334 788899998753 469999999997654444
No 134
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=93.81 E-value=0.11 Score=29.50 Aligned_cols=60 Identities=23% Similarity=0.362 Sum_probs=41.8
Q ss_pred CCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 25 DGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 25 ~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+|+.+.+ ...++..|.+.. +++...+.+..||+.+..+ .-.+.-+.|||.|+++.--.||
T Consensus 5 Ng~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 5665544 567888888765 5667788899999988653 1122369999999998754443
No 135
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=93.73 E-value=0.71 Score=33.40 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=51.3
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC-cceeEEE--CCe--ecCCCCChhhcCCCCCC
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF-KSTPFLI--NGN--RFDYSKTADQLGLKDGD 81 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~-~~~rF~f--dG~--~l~~~~Tp~~l~medgD 81 (98)
....+.++|.-.|| .+.|.|..+++.+.|++..|++.|+.. +-+-+.| +|. .|.++.+..+.+...+.
T Consensus 19 ~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~ 91 (314)
T 1h4r_A 19 QPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEE 91 (314)
T ss_dssp --CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSS
T ss_pred CCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCC
Confidence 46789999999999 788999999999999999999999954 4455555 555 47777777665444333
No 136
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=93.08 E-value=0.36 Score=38.16 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=59.4
Q ss_pred CCCCcEEEEEEc--cCCCEE----EEEEcCccHHHHHHHHHHHhcCCCCcceeEEEC------CeecC-CCCChhhc--C
Q 045424 12 KPQHLINLIIKS--QDGDKR----FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLIN------GNRFD-YSKTADQL--G 76 (98)
Q Consensus 12 ~~~~~I~I~v~~--~~g~~~----~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd------G~~l~-~~~Tp~~l--~ 76 (98)
.++..|-|.++- +....+ ++.|++++++..|....+++.|++.++=-.+|. -++|. .+.|.++. +
T Consensus 126 ~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~e 205 (530)
T 2ylm_A 126 DKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDE 205 (530)
T ss_dssp CTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTT
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhc
Confidence 345667777775 445555 588999999999999999999998854444444 45678 89999999 9
Q ss_pred CCCCCEEEEEce
Q 045424 77 LKDGDEIDAMYH 88 (98)
Q Consensus 77 medgD~Idv~~~ 88 (98)
+.|||+|-+...
T Consensus 206 L~~GdII~fQ~~ 217 (530)
T 2ylm_A 206 LMDGDIIVFQKD 217 (530)
T ss_dssp CCTTEEEEEEEC
T ss_pred ccCCCEEEEEec
Confidence 999998866543
No 137
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=92.63 E-value=0.69 Score=28.45 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=62.2
Q ss_pred CCcEEEEEEcc-C-C-CEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE-CCeecCCCCChhhcCCCCCCEEEEEce-
Q 045424 14 QHLINLIIKSQ-D-G-DKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI-NGNRFDYSKTADQLGLKDGDEIDAMYH- 88 (98)
Q Consensus 14 ~~~I~I~v~~~-~-g-~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l~medgD~Idv~~~- 88 (98)
..+++.+|.-. | . ....+.|-..+||..+..--|+.++++....-.+- ||.=|++.+|+...=|+.|..+-+..+
T Consensus 8 ~~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRD 87 (92)
T 1j0g_A 8 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRD 87 (92)
T ss_dssp SCEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECC
T ss_pred CceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccc
Confidence 46777777532 2 2 23478999999999999999999999886655444 899999999999999999999988854
Q ss_pred ecCC
Q 045424 89 AFGG 92 (98)
Q Consensus 89 q~GG 92 (98)
.+||
T Consensus 88 RVG~ 91 (92)
T 1j0g_A 88 RVGS 91 (92)
T ss_dssp SSCC
T ss_pred cccC
Confidence 3443
No 138
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=92.51 E-value=0.65 Score=27.45 Aligned_cols=61 Identities=31% Similarity=0.358 Sum_probs=41.1
Q ss_pred EEEcCccHHHHHHHHHHHhcC------C--C---CcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 31 FQFNHDVEIKRLLIKYCETKS------Q--P---FKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 31 f~Ik~~t~l~kL~~~y~~~~g------~--~---~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+.+....++..|++..+.++. + + ...+.+..||+.+...+ -.+.-+.|||+|.++.--.||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 345556899999999887752 1 0 14678889999886321 123349999999987654444
No 139
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=92.45 E-value=0.93 Score=32.35 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=47.9
Q ss_pred cEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC-cceeEEE---CCe--ecCCCCChhhcCCCCC
Q 045424 16 LINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF-KSTPFLI---NGN--RFDYSKTADQLGLKDG 80 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~-~~~rF~f---dG~--~l~~~~Tp~~l~medg 80 (98)
.|+++|.-.|| .+.|.|..+++-+.|++..|++.|+.. .-+-|.| +|. .|..+.+..+.+...+
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~ 70 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKE 70 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCC
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCC
Confidence 47788888888 688999999999999999999999954 4455555 444 4666666666544333
No 140
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=92.02 E-value=0.38 Score=30.02 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=44.6
Q ss_pred CCCCCCcEEEEEEccCCCE----EEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECC-eecCCCCChhhc
Q 045424 10 NKKPQHLINLIIKSQDGDK----RFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLING-NRFDYSKTADQL 75 (98)
Q Consensus 10 ~~~~~~~I~I~v~~~~g~~----~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG-~~l~~~~Tp~~l 75 (98)
.+.+.++|+|+++...+.+ ..|.|..+.++..++.-..++..++ .+-++.+. -.-..++|..+|
T Consensus 7 ~~~~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 7 SPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDL 75 (96)
T ss_dssp -----CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHH
T ss_pred CCCCCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHH
Confidence 3345788999998764433 4899999999999999999999887 44443344 234557788877
No 141
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=91.39 E-value=1.5 Score=26.76 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=50.4
Q ss_pred EEEEEEcCccHHHHHHHHHHHh-cCC-----CCcceeEEECC--eecCCCCChhhcCCCCCCEEEEEce
Q 045424 28 KRFFQFNHDVEIKRLLIKYCET-KSQ-----PFKSTPFLING--NRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~-~g~-----~~~~~rF~fdG--~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
..-+-|...++|..+-++.+-. .|. +-+.++..++| +.+..+.|.++-+|..-|+|||+.+
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 3467888999999998888763 333 22478999999 9999999999999999999999874
No 142
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=90.89 E-value=0.25 Score=39.05 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=32.3
Q ss_pred EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEEC
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLIN 62 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd 62 (98)
...|+|.+++++..|++..++..|++.+.+|||.=
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~ 71 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 71 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEE
Confidence 34799999999999999999999999999999973
No 143
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=90.71 E-value=2.3 Score=31.50 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=57.3
Q ss_pred cEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCC----CCcceeEEE------CCeecCCCCChhhcCCCCCCEEEE
Q 045424 16 LINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQ----PFKSTPFLI------NGNRFDYSKTADQLGLKDGDEIDA 85 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~----~~~~~rF~f------dG~~l~~~~Tp~~l~medgD~Idv 85 (98)
.+.++|.-. +...++.+.+++++..+....+++.+- +.+..-++. .|..|..+.|.+.+++.+|+.|+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 356677655 666789999999999999999888753 567877777 467899999999999999999876
Q ss_pred E
Q 045424 86 M 86 (98)
Q Consensus 86 ~ 86 (98)
.
T Consensus 82 ~ 82 (371)
T 3ivf_A 82 R 82 (371)
T ss_dssp E
T ss_pred c
Confidence 5
No 144
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=90.67 E-value=1.7 Score=26.72 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=39.3
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC-cceeEEE
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF-KSTPFLI 61 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~-~~~rF~f 61 (98)
..|+||+.- +|..+.+++.++.++..|.+..++++++.. ..+.+.|
T Consensus 5 ~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky 51 (89)
T 1vd2_A 5 SQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW 51 (89)
T ss_dssp SCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE
T ss_pred CeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 558888864 677889999999999999999999999875 4588887
No 145
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=90.16 E-value=1.5 Score=27.02 Aligned_cols=60 Identities=7% Similarity=0.017 Sum_probs=43.4
Q ss_pred CCcEEEEEEccCCCE----EEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCe-ecCCCCChhhc
Q 045424 14 QHLINLIIKSQDGDK----RFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGN-RFDYSKTADQL 75 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~----~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~-~l~~~~Tp~~l 75 (98)
.++|+|+++...+.+ ..|.|..+.++..++.-.+++.++ +.+-++.+.. .-.+++|..+|
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~L 70 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGEL 70 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHH
Confidence 467999998754433 379999999999999999999998 4554444765 34456777765
No 146
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=89.53 E-value=1 Score=25.50 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=40.5
Q ss_pred EEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 19 LIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 19 I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
|+|..++|.... +...+++..|...+.... ....+-...||+.+..+ .-+++||.|+++.--.+.
T Consensus 3 i~i~~p~g~~~~--~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 3 VMVFTPKGEIKR--LPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp EEEECTTCCEEE--ECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTT-----CBCCSSSBEEEEECCCCC
T ss_pred EEEEcCCCCEEE--cCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCC-----cCcCCCCEEEEEECCCCc
Confidence 555556787644 556677777766552221 12345556799877664 556789999988654443
No 147
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=89.47 E-value=1.2 Score=27.43 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=50.2
Q ss_pred CCcEEEEEEccCCCE----EEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE-CCee-cCCCCChhhc----CCCCCCEE
Q 045424 14 QHLINLIIKSQDGDK----RFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI-NGNR-FDYSKTADQL----GLKDGDEI 83 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~----~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~-l~~~~Tp~~l----~medgD~I 83 (98)
..+|+|+++.....+ ..|.|..+.++..++.-..++..+++++--|+| +..- -.+++|..+| . +||-.+
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLy 81 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLV 81 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEE
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEE
Confidence 357889988754432 489999999999999999999999887666666 6543 3457787665 4 555544
No 148
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=89.24 E-value=4.3 Score=29.95 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=41.4
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC-cceeEEE
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF-KSTPFLI 61 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~-~~~rF~f 61 (98)
...+.++|.-.||....|.|..+++-+.|++..|++.|+.. +-+-+.+
T Consensus 83 ~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 83 KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 46688899999999999999999999999999999999954 5566655
No 149
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.00 E-value=2.8 Score=33.46 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=49.2
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC-cceeEEE---CC--eecCCCCChhhcCCCCCC
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF-KSTPFLI---NG--NRFDYSKTADQLGLKDGD 81 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~-~~~rF~f---dG--~~l~~~~Tp~~l~medgD 81 (98)
..|.++|.-.|| .+.|.|..+++...|++..|.+.|+.. .-+-|.| +| ..|.++.+..+.+...+.
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~ 74 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKEN 74 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCS
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCC
Confidence 568899998898 678999999999999999999999954 4556665 23 256666666655443333
No 150
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=88.95 E-value=0.29 Score=28.78 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=39.0
Q ss_pred EEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 31 FQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 31 f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+.+...+++..|.+. .+++...+.+..||+.+..+ .-+.|||.|+++.--.||
T Consensus 25 ~~~~~~~Tv~dLl~~----L~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 25 IEWREGMKVRDILRA----VGFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCSSCCHHHHHHT----TTCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EECCCCCcHHHHHHH----hCCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 344566788887754 45667788899999998764 569999999987654444
No 151
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=88.85 E-value=3.2 Score=26.48 Aligned_cols=65 Identities=14% Similarity=0.300 Sum_probs=45.5
Q ss_pred EEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEE-E----CC--eecCCCCChhhcCCCCCCEEEEE
Q 045424 19 LIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFL-I----NG--NRFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 19 I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~-f----dG--~~l~~~~Tp~~l~medgD~Idv~ 86 (98)
|++.-++++...+.|++..++..-..+--++.|+.++.+..+ . +| .+|.=+.-..+|. |++|.|-
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~~~~i~WdtDi~~L~---geEL~Ve 92 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNTDAASLI---GEELQVD 92 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEEECCCSCSSSCEECCTTCBHHHHT---TSEEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeEEccccCCCcccccchhhhhhhcc---CcEEEEE
Confidence 444448888889999999999998888888999987665544 3 35 2444444455543 6666664
No 152
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=88.57 E-value=1 Score=32.60 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=45.5
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC-cceeEEE---CCe--ecCCCCChhh
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF-KSTPFLI---NGN--RFDYSKTADQ 74 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~-~~~rF~f---dG~--~l~~~~Tp~~ 74 (98)
...|.++|.-.||....|.|...++-+.|++..|++.|+.. .-+-|.| +|. .|+.+.+..+
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~ 81 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKK 81 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHH
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHH
Confidence 56788888889999999999999999999999999999964 4455555 232 3555555444
No 153
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=88.57 E-value=1.7 Score=25.93 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=42.6
Q ss_pred EEEEcCccHHHHHHHHHHHhcCC------C-------CcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 30 FFQFNHDVEIKRLLIKYCETKSQ------P-------FKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 30 ~f~Ik~~t~l~kL~~~y~~~~g~------~-------~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
.+.. ..+++..|++..++++.- + ...+.+..||+.+...+-+ +.-+.|||+|.++.--.||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence 3444 457899999999887631 1 1247889999988753222 3348999999988776665
No 154
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=88.24 E-value=1.5 Score=27.25 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=49.5
Q ss_pred CcEEEEEEcc--CC-CEEEEEEcCccHHHHHHHHHH--Hhc-CCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 15 HLINLIIKSQ--DG-DKRFFQFNHDVEIKRLLIKYC--ETK-SQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 15 ~~I~I~v~~~--~g-~~~~f~Ik~~t~l~kL~~~y~--~~~-g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
+.|.|.|.-. +. ..+.+.+...+++..+.++.. +.+ .++.+.+.+..+|+.+. .+--|.|||.|+++.-
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEec
Confidence 4566666542 32 234678889999999998874 333 56666788888998886 3444999999999753
No 155
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=87.84 E-value=1.7 Score=27.37 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=45.6
Q ss_pred CCcEEEEEEccCCCEEEEEEcCcc-HHHHHH-HHHH--Hhc-----------CCC--Ccc---eeEEECCeecCCCCChh
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDV-EIKRLL-IKYC--ETK-----------SQP--FKS---TPFLINGNRFDYSKTAD 73 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t-~l~kL~-~~y~--~~~-----------g~~--~~~---~rF~fdG~~l~~~~Tp~ 73 (98)
...|+|.|...++....|.|.+.- .|..+| +++. ... |+. .+. -.|.-+|+.+.. -+.
T Consensus 6 ~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~--Ga~ 83 (101)
T 3u7z_A 6 EKHITVTVIHGDQTENVFEFDTDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNT--SAD 83 (101)
T ss_dssp CEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCS--CGG
T ss_pred eeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhhh--chh
Confidence 467999999999988878777332 344444 3331 000 110 111 124447777664 788
Q ss_pred hcCCCCCCEEEEEce
Q 045424 74 QLGLKDGDEIDAMYH 88 (98)
Q Consensus 74 ~l~medgD~Idv~~~ 88 (98)
++-++|||.|.+.+.
T Consensus 84 ~~~v~dGD~i~~~~t 98 (101)
T 3u7z_A 84 QTPVSDGDAFELTLK 98 (101)
T ss_dssp GCBCCTTCEEEEEEE
T ss_pred heEecCCCEEEEEEe
Confidence 999999999998764
No 156
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=87.60 E-value=3.2 Score=25.23 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=42.4
Q ss_pred CEEEEEEc--CccHHHHHHHHHHHhcCCCC---------c----ceeEEECCeecCCCCChhhcCCCCCCEEEEEceecC
Q 045424 27 DKRFFQFN--HDVEIKRLLIKYCETKSQPF---------K----STPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 27 ~~~~f~Ik--~~t~l~kL~~~y~~~~g~~~---------~----~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~G 91 (98)
.+..+.+. ..+++..|.+..++++.-.. . .+.+..||+.+..... .+.-+.|||+|.++.--.|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~-~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGE-KDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTG-GGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCC-CCcCcCCCCEEEEECCCCC
Confidence 45566665 56899999999888763111 1 2457778886542211 2335999999998876555
Q ss_pred C
Q 045424 92 G 92 (98)
Q Consensus 92 G 92 (98)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 157
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=87.40 E-value=4.4 Score=26.46 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCcEEEEEEccCCC-------EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEE-E-CCeecCCCCChhhcC----CCCC
Q 045424 14 QHLINLIIKSQDGD-------KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFL-I-NGNRFDYSKTADQLG----LKDG 80 (98)
Q Consensus 14 ~~~I~I~v~~~~g~-------~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~-f-dG~~l~~~~Tp~~l~----medg 80 (98)
.++|.|.|.-..+. ...|.|..+.++..++....++.+++.++--|+ | ++.....++|..+|- =+||
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDG 112 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDG 112 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTS
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCC
Confidence 47888888644332 247999999999999999999999988777777 7 454555677888872 2666
Q ss_pred CEEEE
Q 045424 81 DEIDA 85 (98)
Q Consensus 81 D~Idv 85 (98)
-..-.
T Consensus 113 fLyv~ 117 (130)
T 2zjd_A 113 FLYMV 117 (130)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 54433
No 158
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=87.36 E-value=2.4 Score=26.15 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=52.9
Q ss_pred EEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 30 FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 30 ~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
.-.|.-.+|+..|.+....+.|++.+...|+..+..|.+..+.-+-..+-...+.+.++-
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 445666789999999999999999999999998888999999999999999888777655
No 159
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=86.67 E-value=0.27 Score=32.85 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=58.3
Q ss_pred CCCcEEEEEEc-cCCCEEEEEEcCccHHHHHHHHHHHhcC--CCCcceeEEECCeecCCCCChhhcCCC-CCCEEEEEce
Q 045424 13 PQHLINLIIKS-QDGDKRFFQFNHDVEIKRLLIKYCETKS--QPFKSTPFLINGNRFDYSKTADQLGLK-DGDEIDAMYH 88 (98)
Q Consensus 13 ~~~~I~I~v~~-~~g~~~~f~Ik~~t~l~kL~~~y~~~~g--~~~~~~rF~fdG~~l~~~~Tp~~l~me-dgD~Idv~~~ 88 (98)
++..|...+++ ..|..+-+.---...|.+=. ..... -+.+..++|..|+.--..+...++.+. |+|.|-+.++
T Consensus 20 ~~GLipaIvQd~~tg~VLMlayMN~EAl~~Tl---~tg~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~ 96 (138)
T 1zps_A 20 GEDLIIAVAQDHETGEVLMVAYMNREALRRTL---ETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVE 96 (138)
T ss_dssp SCCCEEEEEEETTTCCEEEEEEECHHHHHHHH---HHSBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEE
T ss_pred CCCcEEEEEEECCCCCEEEEEecCHHHHHHHH---hcCcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEE
Confidence 46789999998 46776654433334444322 22222 155677899999988888888888888 9999999999
Q ss_pred ecCCCccc
Q 045424 89 AFGGGHDH 96 (98)
Q Consensus 89 q~GG~~~~ 96 (98)
|.|+.+|-
T Consensus 97 q~G~aCHt 104 (138)
T 1zps_A 97 QEGGACHT 104 (138)
T ss_dssp ESSCSSTT
T ss_pred ecCCcccC
Confidence 99997663
No 160
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=86.45 E-value=3 Score=26.64 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=47.4
Q ss_pred CCcEEEEEEccCCC------EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE-CCeecCCCCChhhc
Q 045424 14 QHLINLIIKSQDGD------KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI-NGNRFDYSKTADQL 75 (98)
Q Consensus 14 ~~~I~I~v~~~~g~------~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l 75 (98)
.++|.|.|.-..+. ...|.|..+.++..++....++.+++.++--|+| ++.....+.|..+|
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHH
Confidence 36788888755432 3479999999999999999999999876655666 66655567778777
No 161
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=85.99 E-value=3.7 Score=25.86 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=47.2
Q ss_pred CCcEEEEEEccCCC------EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE-CCeecCCCCChhhc
Q 045424 14 QHLINLIIKSQDGD------KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI-NGNRFDYSKTADQL 75 (98)
Q Consensus 14 ~~~I~I~v~~~~g~------~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l 75 (98)
.++|.|.|....+. ...|.|..+.++..++....++.+++.++--|+| ++.....++|..+|
T Consensus 25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 36788888765432 2379999999999999999999999876655666 66655667778777
No 162
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=85.39 E-value=2.2 Score=26.07 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHHhcC-CCC---------cce-------eEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 36 DVEIKRLLIKYCETKS-QPF---------KST-------PFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 36 ~t~l~kL~~~y~~~~g-~~~---------~~~-------rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..++..|.+..+.++. +.. ..+ .+..||+.+...+ -.+.-+.|||+|.++.--.||
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECCCSCC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECCCCCC
Confidence 5899999999887742 110 124 7888998875332 223358999999987754444
No 163
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=85.16 E-value=4.1 Score=26.16 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=46.2
Q ss_pred CCcEEEEEEccCCC------EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE-CCeecCCCCChhhc
Q 045424 14 QHLINLIIKSQDGD------KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI-NGNRFDYSKTADQL 75 (98)
Q Consensus 14 ~~~I~I~v~~~~g~------~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l 75 (98)
.++|-|.|.-..+. ...|.|..+.++..++....++..++.++--|+| ++.....+.|..+|
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 46677777654332 2379999999999999999999999887666666 66555557777665
No 164
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=84.96 E-value=1.5 Score=27.51 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=35.9
Q ss_pred CcEEEEEEccC-------CCEEEEEEcCccHHHHHHHHHHHhcCCC-C----cceeEEE
Q 045424 15 HLINLIIKSQD-------GDKRFFQFNHDVEIKRLLIKYCETKSQP-F----KSTPFLI 61 (98)
Q Consensus 15 ~~I~I~v~~~~-------g~~~~f~Ik~~t~l~kL~~~y~~~~g~~-~----~~~rF~f 61 (98)
..|.|||...+ +..+.+.|.++.+|..|+++..++.++. . ..+++.|
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkY 62 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKY 62 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEE
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEE
Confidence 44888988653 4457899999999999999999998863 1 2356766
No 165
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=84.61 E-value=4.4 Score=26.05 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=47.1
Q ss_pred CCcEEEEEEccCCC------EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE-CCeecCCCCChhhc
Q 045424 14 QHLINLIIKSQDGD------KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI-NGNRFDYSKTADQL 75 (98)
Q Consensus 14 ~~~I~I~v~~~~g~------~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l 75 (98)
.++|-|.|.-..+. ...|.|..+.++..++....++..+++++--|+| ++.....+.|..+|
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 46677777654332 2379999999999999999999999887656666 88766667787766
No 166
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=83.83 E-value=6.2 Score=24.93 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=40.5
Q ss_pred EEEEEEcC---ccHHHHHHHHHHHhc-CC----------CCcceeEEECCeec---CCCCChhhcCCCCCCEEEEEceec
Q 045424 28 KRFFQFNH---DVEIKRLLIKYCETK-SQ----------PFKSTPFLINGNRF---DYSKTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 28 ~~~f~Ik~---~t~l~kL~~~y~~~~-g~----------~~~~~rF~fdG~~l---~~~~Tp~~l~medgD~Idv~~~q~ 90 (98)
.+.+.+.. ..++..|++..++++ ++ -...+.++.||+.+ ..-+| -++|||+|.++-..-
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt----~L~dGDeV~iip~va 106 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDY----QLQDQDSILFISTLH 106 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTC----BCCSSEEEEEEECSC
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCc----CCCCCCEEEEeCCCC
Confidence 55677773 258999999998876 11 12235566788744 33333 489999988877666
Q ss_pred CC
Q 045424 91 GG 92 (98)
Q Consensus 91 GG 92 (98)
||
T Consensus 107 GG 108 (114)
T 1wgk_A 107 GG 108 (114)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 167
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=83.77 E-value=5.5 Score=24.31 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=50.9
Q ss_pred EEEEEEcCccHHHHHHHHHHHh-cCC----CCcceeEEECCee--cCCCCChhhcCCCCCCEEEEEce
Q 045424 28 KRFFQFNHDVEIKRLLIKYCET-KSQ----PFKSTPFLINGNR--FDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~-~g~----~~~~~rF~fdG~~--l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
..-+-+...+++..+-++.+.. .|. .+.-++...+|.. +..+.|.++.|+..-|+|||+.+
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~~ 83 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVFE 83 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEEC
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEEc
Confidence 4468899999999999888764 343 2248899999998 99999999999999999999863
No 168
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=81.54 E-value=5.8 Score=25.77 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=50.4
Q ss_pred CCcEEEEEEccCCC------EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE-CCeecCCCCChhhcC----CCCCCE
Q 045424 14 QHLINLIIKSQDGD------KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI-NGNRFDYSKTADQLG----LKDGDE 82 (98)
Q Consensus 14 ~~~I~I~v~~~~g~------~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l~~~~Tp~~l~----medgD~ 82 (98)
.++|-|.|.-..+. ...|.|..+.++..++....++..+++++--|+| ++.....+.|..+|- =+||=.
T Consensus 34 P~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfL 113 (125)
T 3m95_A 34 PDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFL 113 (125)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred CCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeE
Confidence 45677777544332 2479999999999999999999999887766666 665555577777663 256654
Q ss_pred EE
Q 045424 83 ID 84 (98)
Q Consensus 83 Id 84 (98)
.-
T Consensus 114 Y~ 115 (125)
T 3m95_A 114 YI 115 (125)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 169
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=78.88 E-value=9.8 Score=23.96 Aligned_cols=60 Identities=3% Similarity=-0.001 Sum_probs=45.1
Q ss_pred CCCCCCCCcEEEEEEccCCCEEEEEEcC--ccHHHHHHHHHHHhcCCCCcceeEEE---CCeecCCCC
Q 045424 8 KNNKKPQHLINLIIKSQDGDKRFFQFNH--DVEIKRLLIKYCETKSQPFKSTPFLI---NGNRFDYSK 70 (98)
Q Consensus 8 ~~~~~~~~~I~I~v~~~~g~~~~f~Ik~--~t~l~kL~~~y~~~~g~~~~~~rF~f---dG~~l~~~~ 70 (98)
.....=...++|+|.- .|....|.|.- ++++..|....+..+|++ .+++.| ||+.|+-+.
T Consensus 6 ~~~~~m~~~v~lkV~f-~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~S 70 (101)
T 1wj6_A 6 SGPHSMEPQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINS 70 (101)
T ss_dssp CCCCSSCSCEEEEEEE-TTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCCS
T ss_pred CCccccCccEEEEEEE-cCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEEec
Confidence 3344446788899864 77777888855 999999999999999997 456666 577776654
No 170
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=77.50 E-value=8 Score=31.29 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=41.3
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC-cceeEEE
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF-KSTPFLI 61 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~-~~~rF~f 61 (98)
...|.++|.-.||....|.|...++-+.|++..|++.|+.. ..+-+.+
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 45788999999999999999999999999999999999854 4555555
No 171
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=76.59 E-value=11 Score=23.55 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=43.0
Q ss_pred CCCcEEEEEEccCCCEEEEEEc--CccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEE
Q 045424 13 PQHLINLIIKSQDGDKRFFQFN--HDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik--~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~ 86 (98)
+++.|.|+++.++|..+--.|. ..-.|..|.++..+...- .+.|+=+++=|+||.|.|.
T Consensus 11 ~a~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~---------------aT~TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 11 ENQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPE---------------ATTTAFEYEDEDGDRITVR 71 (106)
T ss_dssp --CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTT---------------SCCSEEEEECTTSCEEEEC
T ss_pred ccCceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCcc---------------ceeeeeeeccccCCeeEEc
Confidence 4788899999999999988887 677899999998875531 2345556666888888874
No 172
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=75.41 E-value=7.9 Score=26.02 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=41.6
Q ss_pred EEcCccHHHHHHHHHHHhcC-CC---------CcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCC
Q 045424 32 QFNHDVEIKRLLIKYCETKS-QP---------FKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGG 93 (98)
Q Consensus 32 ~Ik~~t~l~kL~~~y~~~~g-~~---------~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~ 93 (98)
.+.. +++..|++..+.++. +. ...+.+..||+.+...+- .+.-+.|||+|.++.--.||.
T Consensus 19 ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 19 ELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp ECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEE
T ss_pred EECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECcccccc
Confidence 4444 789999988877642 10 245778889998876422 233599999999987666664
No 173
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=75.11 E-value=12 Score=23.22 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=48.6
Q ss_pred EEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEE--ECC--eecCCCCChhhcCCCCCCEEEEE
Q 045424 18 NLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFL--ING--NRFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 18 ~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~--fdG--~~l~~~~Tp~~l~medgD~Idv~ 86 (98)
.|++.-++++...+.+++..++..-..+-.++.|+.++.+..+ -+| .+|.=+.-..+|. |++|.|-
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~L~---~eEL~Ve 88 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLT---GEELHVE 88 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEEEECTTSBGGGGT---TCEEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCccccchhHhhhhcc---CcEEEEE
Confidence 4555558898889999999999999999999999988766654 257 5666555555543 6666654
No 174
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=75.10 E-value=12 Score=22.95 Aligned_cols=51 Identities=4% Similarity=-0.006 Sum_probs=39.2
Q ss_pred CcEEEEEEccCCCEEEEEEcC--ccHHHHHHHHHHHhcCCCCcceeEEE---CCeecCC
Q 045424 15 HLINLIIKSQDGDKRFFQFNH--DVEIKRLLIKYCETKSQPFKSTPFLI---NGNRFDY 68 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~--~t~l~kL~~~y~~~~g~~~~~~rF~f---dG~~l~~ 68 (98)
..++++|.- .|....|.|.- ++++..|....+..+|++ .+++.| +|+.|+-
T Consensus 5 ~~v~lkV~f-~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 5 PQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSI 60 (87)
T ss_dssp CCEEEEEEE-TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEEE
T ss_pred ceEEEEEEE-cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEEE
Confidence 567888864 77778888855 999999999999999997 567777 4555543
No 175
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=74.78 E-value=11 Score=29.32 Aligned_cols=48 Identities=6% Similarity=0.019 Sum_probs=41.2
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC--cceeEEE
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF--KSTPFLI 61 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~--~~~rF~f 61 (98)
...+.++|.-.||....|.|...++-+.|++..|++.|+.. +-+-+.+
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 45688889889999999999999999999999999999963 4555555
No 176
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=73.46 E-value=13 Score=22.71 Aligned_cols=67 Identities=10% Similarity=0.126 Sum_probs=46.8
Q ss_pred EEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE--CC--eecCCCCChhhcCCCCCCEEEEEc
Q 045424 18 NLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI--NG--NRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 18 ~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f--dG--~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
.|++.-++++...+.+++..++..-..+-.++.|+.++.+..+- +| .+|.=+.-..+ | .|++|.|-+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~--L-~~eEL~Ve~ 79 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAP--L-DGEELIVEV 79 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEECSSSBSTT--C-SSCEEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCccccchhHhhhh--c-cCcEEEEEE
Confidence 34444489999999999999999999999999999887665542 56 44444433333 2 366666543
No 177
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=73.17 E-value=22 Score=25.70 Aligned_cols=72 Identities=7% Similarity=-0.005 Sum_probs=50.9
Q ss_pred CCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECC--eecCCCCChhhcCCCCCCEEEEEceecCCCccc
Q 045424 25 DGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLING--NRFDYSKTADQLGLKDGDEIDAMYHAFGGGHDH 96 (98)
Q Consensus 25 ~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG--~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~~~ 96 (98)
.-....+.+....++..+.+.-+++.+++.+...++|++ ..+.+...+.++.--..+.=-+.+.-.|..++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSREGNSHHH 393 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEECC------
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEecCCCcccc
Confidence 334557899999999999999999999999999999987 455566677776665555445555656655554
No 178
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=70.52 E-value=8.1 Score=31.41 Aligned_cols=59 Identities=25% Similarity=0.311 Sum_probs=43.2
Q ss_pred EEEEEEcCccHHHHHHHHHHHhcC--CCCcc--------eeEEECCe--------ecCCCCChhhcCCCCCCEEEEE
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETKS--QPFKS--------TPFLINGN--------RFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~g--~~~~~--------~rF~fdG~--------~l~~~~Tp~~l~medgD~Idv~ 86 (98)
...+.+..+.+++.+.+.+|++.. +.... .+++|+.. +-+-+.|..+|++.+|++|.|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 567888888899999999999754 43222 35566532 1234778999999999999885
No 179
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=70.40 E-value=2.9 Score=28.03 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.5
Q ss_pred hcCCCCCCEEEEEceecCC
Q 045424 74 QLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 74 ~l~medgD~Idv~~~q~GG 92 (98)
.|+|+|||.|.+.+....+
T Consensus 119 ~L~LkDGD~V~I~v~~~~~ 137 (146)
T 2oyn_A 119 QFNLKDGDVIKILIKGDKD 137 (146)
T ss_dssp HHTCCTTCEEEEEEECCTT
T ss_pred hcCCCCCCEEEEEEeCCCC
Confidence 8999999999888765443
No 180
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=68.54 E-value=11 Score=22.20 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=37.5
Q ss_pred EEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 18 NLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 18 ~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
.|.|..++|..+.|. ...+...+- |+-..++..+.+--.+||+.+..+ ..|++||+|+++..
T Consensus 7 ~i~v~tP~G~~~~lp--~GaT~~D~A--~~Ih~~lg~~~v~AkVNG~~v~L~-----~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVISLP--IGSTVIDFA--YAIHSAVGNRMIGAKVDGRIVPID-----YKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEEEEE--TTCBHHHHH--HHHCHHHHHTEEEEEETTEEECTT-----CBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEEEec--CCCCHHHHH--HHhhhhhhcceEEEEECCEEcCCC-----cccCCCCEEEEEcc
Confidence 356667899876654 444444432 222222222345566799887764 34899999998764
No 181
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=68.48 E-value=2 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=19.7
Q ss_pred ECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 61 INGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 61 fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
|+...=.....+.+|.++-||+|.|.-+
T Consensus 13 y~~~~~~~~~~~~eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 13 YYGIPPPPGAFGPFLRLNPGDIVELTKA 40 (70)
T ss_dssp BSSSSCCGGGCSCBCCBCTTCEEEEEEC
T ss_pred EEecCCCCCCCCCcCCcCCCCEEEEEeC
Confidence 4443333344567999999999999877
No 182
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=64.54 E-value=15 Score=23.17 Aligned_cols=53 Identities=6% Similarity=0.001 Sum_probs=45.6
Q ss_pred CCCcEEEEEEc-cCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCee
Q 045424 13 PQHLINLIIKS-QDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNR 65 (98)
Q Consensus 13 ~~~~I~I~v~~-~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~ 65 (98)
=...|+.++.- +.++.+.++-|++.++..++.-.-.++|+..+++...-.|+.
T Consensus 13 lE~Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~ 66 (104)
T 1wfy_A 13 LENRITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEK 66 (104)
T ss_dssp CCSCEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCS
T ss_pred EEeeEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCc
Confidence 36788889866 789999999999999999999999999999888888766653
No 183
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=60.59 E-value=8.2 Score=20.85 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=16.8
Q ss_pred CChhhcCCCCCCEEEEEceec
Q 045424 70 KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+.+|.++-||+|.|.-+.-
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~~ 35 (62)
T 2fpe_A 15 RHEDELELEVDDPLLVELQAE 35 (62)
T ss_dssp SSTTBCCBCTTCEEEEEEECT
T ss_pred cCcCcCcCCCCCEEEEEEecC
Confidence 567899999999999964433
No 184
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=60.23 E-value=4.2 Score=27.91 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=9.0
Q ss_pred CCCChhhcCCCCCCEEEEEceecCCCccc
Q 045424 68 YSKTADQLGLKDGDEIDAMYHAFGGGHDH 96 (98)
Q Consensus 68 ~~~Tp~~l~medgD~Idv~~~q~GG~~~~ 96 (98)
+.+=.+.|.++|||+|.|.+.-.|--++|
T Consensus 201 ~~~L~~~l~l~~g~~v~~~~~~~~~~~~~ 229 (230)
T 3cta_A 201 DKYLREEINLHDGDRVSVEVYTEGHHHHH 229 (230)
T ss_dssp C------------CEEEEEECC-------
T ss_pred CcchHhhcCCCCCCEEEEEEEecCccccC
Confidence 33333457899999999999988854443
No 185
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=59.23 E-value=6.6 Score=22.62 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.3
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 22 ~~~~eLsf~~Gd~i~v~~~~~~~ 44 (80)
T 2i0n_A 22 SDTSLLPFKRNDIITITFKDQEN 44 (80)
T ss_dssp CSSSSCCBCSSEEEEEEEESSSS
T ss_pred CCCCCcCCCCCCEEEEEEecCCC
Confidence 46788999999999998876655
No 186
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=58.60 E-value=9.1 Score=21.51 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=18.9
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...+.+|.++-||+|.|.-+.-.|
T Consensus 17 a~~~~ELs~~~Gd~i~v~~~~~~g 40 (65)
T 2lj0_A 17 PQNDDELELRDGDIVDVMEKCDDG 40 (65)
T ss_dssp CSSTTBCCBCTTCEEEEEEECTTS
T ss_pred CCCcCCcCCCCCCEEEEeEeCCCC
Confidence 357889999999999987654444
No 187
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=57.18 E-value=19 Score=23.27 Aligned_cols=74 Identities=9% Similarity=-0.050 Sum_probs=53.2
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCc---------ceeEEECCeecC--CCCChhhcCCCCCC
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFK---------STPFLINGNRFD--YSKTADQLGLKDGD 81 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~---------~~rF~fdG~~l~--~~~Tp~~l~medgD 81 (98)
+.+.|..+|-..+...++++++-+..-+.|+.+.+++.+...+ =+...+.|+++- +++..-.-.|.-..
T Consensus 6 ~~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~Ng 85 (120)
T 2dhz_A 6 SGDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINS 85 (120)
T ss_dssp SCCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSE
T ss_pred CCCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccc
Confidence 4577888888888888999999999999999999999987432 344677888654 45554433344444
Q ss_pred EEEEE
Q 045424 82 EIDAM 86 (98)
Q Consensus 82 ~Idv~ 86 (98)
.|-|.
T Consensus 86 RLfvc 90 (120)
T 2dhz_A 86 HLFAC 90 (120)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44444
No 188
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=57.17 E-value=10 Score=19.98 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=18.9
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...+.+|.++-||+|.|.-+...|
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~~~~g 35 (58)
T 1zuy_A 12 SGSPSELPLKKGDVIYITREEPSG 35 (58)
T ss_dssp CSCTTBCCBCTTCEEEEEEECTTS
T ss_pred CCCCCcCCCCCCCEEEEEEecCCC
Confidence 457889999999999998765443
No 189
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=56.55 E-value=10 Score=20.13 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.4
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 12 ~~~~eLs~~~Gd~i~v~~~~~~~ 34 (58)
T 1jo8_A 12 AEDNELTFVENDKIINIEFVDDD 34 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCCcccCCCCEEEEEEecCCC
Confidence 45789999999999998765444
No 190
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=54.41 E-value=34 Score=20.78 Aligned_cols=49 Identities=10% Similarity=-0.086 Sum_probs=38.2
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCe
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGN 64 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~ 64 (98)
...|.||+-- ++.-+.+++..+..|+.|.+..+++..+. +.+.|.|.++
T Consensus 10 ~~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 10 LKTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp CCCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred cCceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 3668888864 45678999999999999999999999884 4455555554
No 191
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=54.39 E-value=29 Score=20.03 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=36.0
Q ss_pred CCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 12 KPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 12 ~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
+|+..|+|++ ++|....|.--. +++..+...+. .++....+--..||+.+.-+. -+++++.|++..
T Consensus 7 ~~~~~i~I~l--pdG~~~~~~~~~-~T~~dia~~i~--~~l~~~~vaakvNg~l~dL~~-----~l~~d~~ve~vt 72 (88)
T 1wwt_A 7 GDSKPIKVTL--PDGKQVDAESWK-TTPYQIACGIS--QGLADNTVIAKVNNVVWDLDR-----PLEEDCTLELLK 72 (88)
T ss_dssp CSCCEEEEEC--TTSCEEEEETTT-CCHHHHHHHSS--TTTGGGCCCEEESSSEECSSS-----CCCSSEEEEECS
T ss_pred CCCCCEEEEE--CCCCEEEcccCC-CCHHHHHHHhh--hccccceEEEEECCEEECCCc-----CcCCCCEEEEEe
Confidence 5556666665 678876665312 44444443332 233334455567887665332 355677777653
No 192
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=54.36 E-value=11 Score=22.31 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=30.8
Q ss_pred EEEEEEcCccHHHHHHHHHHHhcCCC-----CcceeEEE---CCeecC
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETKSQP-----FKSTPFLI---NGNRFD 67 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~g~~-----~~~~rF~f---dG~~l~ 67 (98)
.+++.|.++.++..|.+..+++.++. ...+++.| +|..+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vt 50 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV 50 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEE
Confidence 46788999999999999999999975 35566766 455443
No 193
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=54.03 E-value=10 Score=20.69 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=18.4
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+..+|
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~g 40 (65)
T 2j05_A 18 PDTDEISFLKGDMFIVHNELEDG 40 (65)
T ss_dssp TTSSBCCBCTTCEEEEEEECTTS
T ss_pred CCCCcCcCCCCCEEEEeEecCCC
Confidence 56789999999999998664443
No 194
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=53.45 E-value=14 Score=19.62 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=18.3
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~~~ 36 (58)
T 1zx6_A 14 QQDGDLGLKPGDKVQLLEKLSPE 36 (58)
T ss_dssp CSTTBCCBCTTCEEEEEEECSSS
T ss_pred CCCCCccCCCCCEEEEEEecCCC
Confidence 46789999999999998665443
No 195
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=53.32 E-value=13 Score=20.07 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.5
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 13 VHDDELTIRVGEIIRNVKK 31 (62)
T ss_dssp SSTTBCCBCTTCEEEEEEE
T ss_pred CCcCCcCCcCCCEEEEEEe
Confidence 4677999999999999876
No 196
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=52.91 E-value=12 Score=19.77 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=18.3
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~ 35 (58)
T 2bz8_A 13 QHDDELTISVGEIITNIRKEDGG 35 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCTTT
T ss_pred CCcCEeeECCCCEEEEEEeCCCC
Confidence 46789999999999998765443
No 197
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=52.80 E-value=6.8 Score=22.97 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=19.8
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
.+-.+.|+++.||+.++.++..+|
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdg 54 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDG 54 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETT
T ss_pred HHHHHHhCCCCCCEEEEEEecCCC
Confidence 344678899999999999988887
No 198
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=52.64 E-value=13 Score=19.64 Aligned_cols=23 Identities=17% Similarity=0.435 Sum_probs=18.0
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~ 35 (58)
T 1uti_A 13 LEEDELGFRSGEVVEVLDSSNPS 35 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCcCCCCCCCCCEEEEEEECCCC
Confidence 45789999999999998764443
No 199
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=52.54 E-value=75 Score=24.34 Aligned_cols=60 Identities=8% Similarity=0.015 Sum_probs=41.3
Q ss_pred EEEEEEcCccHHHHHHHHHHHhc--------------------CCC--Cccee---EEECCeecCCCCChhhcCCCCCCE
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETK--------------------SQP--FKSTP---FLINGNRFDYSKTADQLGLKDGDE 82 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~--------------------g~~--~~~~r---F~fdG~~l~~~~Tp~~l~medgD~ 82 (98)
...+.+++.++|-.+|++=.+.- |+. .++-. |+-+|.++.. =..++..+|||.
T Consensus 314 ~~~Vtv~~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~~~~~~~~~YW~l~~~g~~~~~--G~~~y~~~~gd~ 391 (399)
T 2pmv_A 314 TINVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAENVNHKTYWQFLSGVTPLNE--GVADYIPFNHEH 391 (399)
T ss_dssp CEEEESSSCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBCCGGGTEEEEEEETTEECSS--CTTTCCCCTTCE
T ss_pred ceEEEecCCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCCccCcCCCeeEEEEECCeeccc--chhheecCCCCE
Confidence 35899999999999997766551 221 11222 3336676554 568888999999
Q ss_pred EEEEcee
Q 045424 83 IDAMYHA 89 (98)
Q Consensus 83 Idv~~~q 89 (98)
|.+.+..
T Consensus 392 I~f~~~~ 398 (399)
T 2pmv_A 392 ITANFTQ 398 (399)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 9998753
No 200
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=51.60 E-value=13 Score=19.80 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=18.4
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+...|
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~~~ 39 (63)
T 3eg3_A 17 SGDNTLSITKGEKLRVLGYNHNG 39 (63)
T ss_dssp CSSSBCCBCTTCEEEEEEECTTS
T ss_pred CCCCccCCCCCCEEEEEEeCCCC
Confidence 46778999999999998765444
No 201
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=51.49 E-value=15 Score=19.67 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=18.2
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 16 ~~~~eLs~~~Gd~i~v~~~~~~~ 38 (60)
T 1w70_A 16 NSKLELNFKAGDVIFLLSRINKD 38 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEECSSS
T ss_pred CCCCCccCCCCCEEEEEEeCCCC
Confidence 46778999999999998765443
No 202
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=51.40 E-value=15 Score=19.56 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=18.2
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 16 ~~~~eLs~~~Gd~i~v~~~~~~~ 38 (59)
T 2g6f_X 16 TNEDELSFSKGDVIHVTRVEEGG 38 (59)
T ss_dssp SSTTBCCBCTTCEEEEEEECTTS
T ss_pred CCcCCcCCCCCCEEEEEEecCCC
Confidence 45789999999999988665444
No 203
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=50.74 E-value=39 Score=20.44 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=33.6
Q ss_pred CcEEEEEEccCCCEEEEEEcCc--cHHHHHHHHHHHhcCCCCcceeEEE
Q 045424 15 HLINLIIKSQDGDKRFFQFNHD--VEIKRLLIKYCETKSQPFKSTPFLI 61 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~--t~l~kL~~~y~~~~g~~~~~~rF~f 61 (98)
..+.||.+. +.....|.+.++ .++..++......+.+..-.+.+.|
T Consensus 5 ~~l~vKskf-~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y 52 (86)
T 1wmh_B 5 SIVEVKSKF-DAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGY 52 (86)
T ss_dssp CEEEEEEEE-TTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEE
T ss_pred CEEEEEeec-CCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEE
Confidence 344455443 444558999866 7899999999999988776777777
No 204
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=50.60 E-value=15 Score=20.41 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=17.2
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.++-||+|.|.-+.-+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~ 39 (71)
T 2fpf_A 18 RHEDELELEVDDPLLVELQAED 39 (71)
T ss_dssp SSTTBCCBCTTCEEEEEEECTT
T ss_pred cCCCcccCcCCcEEEEeEecCC
Confidence 4578899999999999754433
No 205
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=50.47 E-value=15 Score=19.83 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=18.0
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~~~ 39 (62)
T 1uj0_A 17 VEDNELTFKHGELITVLDDSDAN 39 (62)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCcCCcCCCCCCEEEEEEeCCCC
Confidence 45678999999999998765443
No 206
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=50.15 E-value=14 Score=19.89 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=18.5
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 33 ~~~~eLsf~~Gd~i~v~~~~~~~ 55 (62)
T 1g2b_A 33 KSPREVTMKKGDILTLLNSTNKD 55 (62)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCccCCCCCCEEEEEEecCCC
Confidence 46779999999999998765444
No 207
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=50.10 E-value=15 Score=19.31 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=18.2
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~~~ 36 (58)
T 2vwf_A 14 QEDGELGFRRGDFIHVMDNSDPN 36 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCcCCcCCCCCCEEEEEEcCCCC
Confidence 46779999999999998764443
No 208
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=49.91 E-value=11 Score=20.32 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=20.6
Q ss_pred CCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 62 NGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 62 dG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
.|+-.-+..--+.|+++.||.+++.++
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd~v~i~~~ 37 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGDLVKVTFD 37 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTCEEEEEEC
T ss_pred CCEEEeCHHHHHHcCcCCCCEEEEEEE
Confidence 455555666678899999999998875
No 209
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=49.88 E-value=15 Score=20.12 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=18.0
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 19 ~~~~eLsf~~Gd~i~v~~~~~~~ 41 (68)
T 1tg0_A 19 DYEDDLNFEKDQEIIVTSVEDAE 41 (68)
T ss_dssp SCTTBCCBCTTCEEEEEEECSSS
T ss_pred CCcCCCCCCCCCEEEEEEecCCC
Confidence 46789999999999998654433
No 210
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=49.84 E-value=15 Score=19.63 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=18.2
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~~~~ 37 (61)
T 1y0m_A 15 QREDELTFTKSAIIQNVEKQDGG 37 (61)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCCcCCcCCCEEEEEEecCCC
Confidence 56779999999999998764443
No 211
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=49.77 E-value=16 Score=19.03 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.4
Q ss_pred CChhhcCCCCCCEEEEEceec
Q 045424 70 KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+.+|.++-||+|.|.-+..
T Consensus 12 ~~~~eLs~~~Gd~i~v~~~~~ 32 (54)
T 2a28_A 12 QGDDEISIDPGDIITVIRGDD 32 (54)
T ss_dssp CSTTBCCBCTTCEEEEEECCC
T ss_pred CCCCCccCCCCCEEEEEEecC
Confidence 467899999999999987653
No 212
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=49.60 E-value=15 Score=20.26 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=16.5
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 23 ~~~~eLs~~~Gd~i~v~~~~ 42 (71)
T 1csk_A 23 TAEQDLPFCKGDVLTIVAVT 42 (71)
T ss_dssp SSTTBCCBCTTCEEEEEEEC
T ss_pred CCCCcCCCCCCCEEEEeECC
Confidence 45689999999999998733
No 213
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=49.53 E-value=15 Score=20.28 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=17.9
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~ 35 (65)
T 2nwm_A 13 QSPKELTLQKGDIVYIHKEVDKN 35 (65)
T ss_dssp CSTTBCCBCTTCEEEEEECCTTT
T ss_pred CCcCccCCcCCCEEEEEEecCCC
Confidence 46789999999999997654333
No 214
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=49.47 E-value=15 Score=19.47 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.0
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.++-||+|.|.-+.
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~ 33 (60)
T 2v1q_A 14 ESQDELTIKSGDKVYILDDK 33 (60)
T ss_dssp CSTTBCCBCTTCEEEEEESS
T ss_pred CCCCCccCCCCCEEEEEeCC
Confidence 56789999999999998763
No 215
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=49.15 E-value=36 Score=21.44 Aligned_cols=49 Identities=10% Similarity=-0.024 Sum_probs=38.2
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHHH-HHHHhcCC-------CCcceeEEE
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLLI-KYCETKSQ-------PFKSTPFLI 61 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~-~y~~~~g~-------~~~~~rF~f 61 (98)
+.+.+.|.+.-++|--+.+.+.++.+++.|+. .+.+.... +.++..|..
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~ 72 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVS 72 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEE
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEE
Confidence 45889999999999999999999999999996 44443222 456777765
No 216
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=49.03 E-value=29 Score=25.68 Aligned_cols=56 Identities=2% Similarity=0.068 Sum_probs=40.7
Q ss_pred EEEEccCCC----EEEEEEcCccHHHHHHHHHHHhcCCCC-cceeEEE--C--Ce--ecCCCCChhh
Q 045424 19 LIIKSQDGD----KRFFQFNHDVEIKRLLIKYCETKSQPF-KSTPFLI--N--GN--RFDYSKTADQ 74 (98)
Q Consensus 19 I~v~~~~g~----~~~f~Ik~~t~l~kL~~~y~~~~g~~~-~~~rF~f--d--G~--~l~~~~Tp~~ 74 (98)
++|.-.+|. ...|++..+++.+.|++..|++.|+.. +-+-|.+ . |+ .|.++.+..+
T Consensus 10 l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 345556776 889999999999999999999999943 4445544 2 22 4667666554
No 217
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=49.02 E-value=17 Score=19.14 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.4
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.++-||+|.|.-+.-.
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~ 34 (59)
T 1yn8_A 13 ENDNELRLAEGDIVFISYKHGQ 34 (59)
T ss_dssp CSTTBCCBCTTCEEEEEEEEET
T ss_pred CCCCCcCCCCCCEEEEEEcCCC
Confidence 4677999999999998765433
No 218
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=48.35 E-value=12 Score=19.93 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=17.4
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.+.-||+|.|.-+..+
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~~~ 36 (60)
T 2x3w_D 15 QEQDELSFKAGDELTKLGEEDE 36 (60)
T ss_dssp SSSSBCCBCTTCEEEECSCCCS
T ss_pred cCCCcccCCCCCEEEEEEccCC
Confidence 4567999999999999765443
No 219
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=48.04 E-value=16 Score=19.16 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=17.8
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-+|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~ 35 (57)
T 1cka_A 13 NDEEDLPFKKGDILRIRDKPEEQ 35 (57)
T ss_dssp SSTTBCCBCTTCEEEEEECSSSS
T ss_pred CCCCCCCCCCCCEEEEEEecCCC
Confidence 35678999999999998764443
No 220
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=47.99 E-value=17 Score=20.16 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=18.4
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 15 ~~~~eLsf~~Gd~i~v~~~~~~~ 37 (68)
T 2ew3_A 15 ENQGELGFKEGDIITLTNQIDEN 37 (68)
T ss_dssp CSTTBCCBCTTCEEEEEEESSSS
T ss_pred CCCCccCCCCCCEEEEEEecCCC
Confidence 46789999999999998765443
No 221
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=47.73 E-value=12 Score=20.44 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.4
Q ss_pred ChhhcCCCCCCEEEEEce
Q 045424 71 TADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 71 Tp~~l~medgD~Idv~~~ 88 (98)
.+++|.+.-||+|.|..+
T Consensus 21 ~~e~Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 21 NSTLLSFKEGDLITLLVP 38 (67)
T ss_dssp CTTBCCBCTTCEEEECSS
T ss_pred CCCCccCCCCCEEEEeec
Confidence 345699999999999754
No 222
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=47.47 E-value=16 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=16.4
Q ss_pred ChhhcCCCCCCEEEEEcee
Q 045424 71 TADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 71 Tp~~l~medgD~Idv~~~q 89 (98)
.+.+|.++-||+|.|.-+.
T Consensus 31 ~~~eLsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 31 FGGFLRLNPGDIVELTKAE 49 (78)
T ss_dssp SCCCCCBCTTCEEEEEECC
T ss_pred CCCccCCCCCCEEEEEEcC
Confidence 3689999999999998774
No 223
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=47.42 E-value=12 Score=21.13 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=18.4
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
+.+.+|.++-||+|.|.-+.-.|
T Consensus 23 ~~~~eLs~~~Gd~i~v~~~~~~g 45 (73)
T 2ebp_A 23 YDTDSLKLKKGDIIDIISKPPMG 45 (73)
T ss_dssp TCCSBCCBCSSCEEEEEECCSSS
T ss_pred CCCCccCCCCCCEEEEEEeCCCC
Confidence 46789999999999998765443
No 224
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=47.25 E-value=18 Score=19.19 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.0
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-.|
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~~~ 39 (60)
T 2xmf_A 17 QDTDELSFNANDIIDIIKEDPSG 39 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEECTTS
T ss_pred CCcCCcCCCCCCEEEEEEecCCC
Confidence 45688999999999998765433
No 225
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=47.24 E-value=8.4 Score=25.05 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=15.8
Q ss_pred CCChhhcCCCCCCEEEEEc
Q 045424 69 SKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~ 87 (98)
-++++.||++|||.|.|.-
T Consensus 59 p~dA~~lGI~dGd~V~V~s 77 (146)
T 2ki8_A 59 EEDWNALGLQEGDRVKVKT 77 (146)
T ss_dssp HHHHHHHTCCTTCEEEEEC
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 3568999999999988863
No 226
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=47.20 E-value=17 Score=19.16 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=17.1
Q ss_pred CChhhcCCCCCCEEEEEceec
Q 045424 70 KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+.+|.+.-||+|.|.-+.-
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~~ 35 (58)
T 1zlm_A 15 RTPDELYFEEGDIIYITDMSD 35 (58)
T ss_dssp SSTTBCCBCTTCEEEEEECCS
T ss_pred CCCCCccCCCCCEEEEEEeCC
Confidence 457899999999999987643
No 227
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=47.05 E-value=18 Score=19.27 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.5
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~~ 40 (60)
T 2gnc_A 18 RSARELSFKKGASLLLYHRASED 40 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEEEETT
T ss_pred CCcCCcCCCCCCEEEEEEecCCC
Confidence 46779999999999998765444
No 228
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=46.84 E-value=13 Score=19.54 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=17.7
Q ss_pred CChhhcCCCCCCEEEEEceec
Q 045424 70 KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+.+|.+.-||+|.|.-+..
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 13 KDDDEITITPGDKISLVARDT 33 (58)
T ss_dssp CSTTBCCBCTTCCEEEEECCS
T ss_pred cCCCcccCCCCCEEEEeEcCC
Confidence 467799999999999987665
No 229
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=46.82 E-value=17 Score=19.06 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=17.9
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~~~ 36 (58)
T 1sem_A 14 QESGELAFKRGDVITLINKDDPN 36 (58)
T ss_dssp SSTTBCCBCTTCEEEEEECSSSS
T ss_pred CCCCCcCCCCCCEEEEEEecCCC
Confidence 45789999999999998764333
No 230
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=46.36 E-value=13 Score=20.19 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=17.6
Q ss_pred ChhhcCCCCCCEEEEEceecCC
Q 045424 71 TADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 71 Tp~~l~medgD~Idv~~~q~GG 92 (98)
++.+|.+.-||+|.|.-+..+|
T Consensus 2 ~~~eLs~~~Gd~i~v~~~~~~~ 23 (63)
T 1tuc_A 2 GPREVTMKKGDILTLLNSTNKD 23 (63)
T ss_dssp CCCCCCBCTTCEEEEEECCSSS
T ss_pred CccccCCCCCCEEEEEEecCCC
Confidence 5778999999999998765444
No 231
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.04 E-value=18 Score=19.92 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=17.7
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.+.-||+|.|.-+..+
T Consensus 19 ~~~~eLs~~~Gd~i~vl~~~~~ 40 (70)
T 2ct4_A 19 SSEGTISMAEGEDLSLMEEDKG 40 (70)
T ss_dssp CSTTCCCBCTTCEEEEEECCSS
T ss_pred CCCCcCCCCCCCEEEEEeccCC
Confidence 5678999999999999865433
No 232
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=46.03 E-value=19 Score=19.74 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.0
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...+.+|.+.-||+|.|.-+.-+|
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~~~~~~ 37 (69)
T 1ruw_A 14 SGSSSELPLKKGDIVFISRDEPSG 37 (69)
T ss_dssp CSCTTBCCBCTTCEEEEEEECTTS
T ss_pred CCCCCcccCCCCCEEEEEEecCCC
Confidence 457889999999999998765443
No 233
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=45.94 E-value=18 Score=19.40 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=18.2
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~~~ 39 (62)
T 1k4u_S 17 TQPEDLEFQEGDIILVLSKVNEE 39 (62)
T ss_dssp CSSSBCCBCSSCEEEEEEESSSS
T ss_pred CCCCCccCCCCCEEEEEEeCCCC
Confidence 45678999999999998765444
No 234
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=45.93 E-value=21 Score=18.63 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=17.8
Q ss_pred CCChhhcCCCCCCEEEEEceecC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~G 91 (98)
...+.+|.+.-||+|.|.-+...
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~~~~ 34 (58)
T 4e6r_A 12 AEREDELSLVXGSRVTVMEXCSD 34 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEEECTT
T ss_pred CCCCCEeeEeCCCEEEEeEcCCC
Confidence 34578899999999999765433
No 235
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=45.82 E-value=12 Score=20.65 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=17.2
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
+.+.+|.+.-||+|.|.-+..+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~ 34 (65)
T 2fei_A 13 QNEDELELKVGDIIDINEEVEE 34 (65)
T ss_dssp CSTTBCCCCTTCEEECCCCSSS
T ss_pred CCcCccCCCCCCEEEEEEecCC
Confidence 5678999999999998765333
No 236
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=45.77 E-value=51 Score=20.35 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=35.2
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCC
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQP 53 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~ 53 (98)
.++.|+|-..||....+.|..+.+-..+.+.-+++.++.
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~ 46 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL 46 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 457888888999999999999999999999999998875
No 237
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=45.67 E-value=19 Score=18.87 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=16.6
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 15 QTGDELTFKEGDTIIVHQKD 34 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCCcCCCCCCEEEEEEec
Confidence 46788999999999987664
No 238
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=45.48 E-value=6.2 Score=24.90 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=19.2
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
.....+|.++-|++++|+...-.|
T Consensus 52 k~g~~DLpfkkGE~LeVI~~~e~~ 75 (102)
T 1ri9_A 52 KWGTRDLQVKPGESLEVIQTTDDT 75 (102)
T ss_dssp CCCTTBCCCCTTCBCEEEEESSSS
T ss_pred cCCcccCCcCCCCEEEEEEeCCCC
Confidence 456889999999999998765443
No 239
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=45.21 E-value=20 Score=19.46 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=18.4
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~~ 40 (67)
T 2o9s_A 18 DTQVEMSFRKGERITLLRQVDEN 40 (67)
T ss_dssp SSTTBCCBCTTCEEEEEEECSSS
T ss_pred CCcCccCCCCCCEEEEEEecCCC
Confidence 46789999999999998764443
No 240
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=45.10 E-value=12 Score=20.68 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=16.7
Q ss_pred CCChhhcCCCCCCEEEEEceecC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~G 91 (98)
...+.+|.+.-||+|.| -+..+
T Consensus 21 ~~~~~eLs~~~Gd~i~v-~~~~~ 42 (72)
T 2kgt_A 21 SRTDEELSFRAGDVFHV-ARKEE 42 (72)
T ss_dssp CSSTTSCBCCTTCCEEE-EEECS
T ss_pred CCCcCCcCCCCCCEEEE-eeCCC
Confidence 34678999999999999 44333
No 241
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.01 E-value=22 Score=19.51 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=18.3
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (68)
T 2dl4_A 19 QENEDLEMRPGDIITLLEDSNED 41 (68)
T ss_dssp SSTTBCCCCTTCEEEEEECCCSS
T ss_pred CCcCCcCCCCCCEEEEEEeCCCC
Confidence 46789999999999998764444
No 242
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=44.98 E-value=36 Score=27.60 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=44.2
Q ss_pred CCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEEC-CeecCCCCChhhcC
Q 045424 25 DGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLIN-GNRFDYSKTADQLG 76 (98)
Q Consensus 25 ~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd-G~~l~~~~Tp~~l~ 76 (98)
......|.|.+++++..|.....+..|++.+...|++. |..+.++..+..+-
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 44556899999999999999999999999999999995 77788887887753
No 243
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=44.72 E-value=21 Score=19.91 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=18.5
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-+|
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~~~~ 47 (73)
T 3c0c_A 25 ENDGELGFREGDLITLTNQIDEN 47 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEECSSS
T ss_pred CCCCCccCcCCCEEEEEEecCCC
Confidence 56789999999999998765444
No 244
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=44.68 E-value=24 Score=19.92 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=18.6
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+...|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~g 41 (80)
T 1ue9_A 19 SGSEQLSLAPGQLILILKKNTSG 41 (80)
T ss_dssp CSTTBCCCCTTCEEEEEEECSSS
T ss_pred CCCCCCCCCCCCEEEEEEecCCC
Confidence 46889999999999998765443
No 245
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=44.65 E-value=13 Score=23.23 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=37.3
Q ss_pred CEEEEEEcC----ccHHHHHHHHHHHhcCCCCc-------------ceeEEECCeecCCCCChhhcCCCCCCEEEEEcee
Q 045424 27 DKRFFQFNH----DVEIKRLLIKYCETKSQPFK-------------STPFLINGNRFDYSKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 27 ~~~~f~Ik~----~t~l~kL~~~y~~~~g~~~~-------------~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q 89 (98)
....+.+.. ..+++.|++..++++..... .+-.+.||..+.-- --.+..++|||+|.++-..
T Consensus 21 ~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l-~gldt~L~dgD~V~fistl 99 (110)
T 2k9x_A 21 KQTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVV-GGMDYVLNDGDTVEFISTL 99 (110)
T ss_dssp SCSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHH-TSSCCCCCSSCEEEEEECC
T ss_pred CeEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeecc-CCcccCCCCcCEEEEeCCC
Confidence 334555552 24799999888887532111 12244455443210 0123459999998887777
Q ss_pred cCCCcc
Q 045424 90 FGGGHD 95 (98)
Q Consensus 90 ~GG~~~ 95 (98)
=||--+
T Consensus 100 hg~~~~ 105 (110)
T 2k9x_A 100 HGGLEH 105 (110)
T ss_dssp CCC---
T ss_pred cccccc
Confidence 777443
No 246
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=44.19 E-value=20 Score=19.17 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=18.4
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~~~ 35 (65)
T 2oaw_A 13 KSPREVTMKKGDILTLLNSTNKD 35 (65)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSS
T ss_pred cCCCCCCCCCCCEEEEEEcCCCC
Confidence 46789999999999998765444
No 247
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=44.16 E-value=19 Score=19.57 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=17.9
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (68)
T 2dl3_A 19 QTLKELPLQKGDIVYIYKQIDQN 41 (68)
T ss_dssp SSTTBCCBCTTCEEEEEECCSTT
T ss_pred CCcCCccCCCCCEEEEeEecCCC
Confidence 46778999999999997654443
No 248
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=43.93 E-value=21 Score=19.20 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=17.9
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~~ 40 (64)
T 2ak5_A 18 TNEDELSFSKGDVIHVTRVEEGG 40 (64)
T ss_dssp CSTTBCCBCTTCEEEEEECCTTS
T ss_pred cCcCcccCCCCCEEEEeEecCCC
Confidence 35789999999999998654443
No 249
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=43.92 E-value=55 Score=20.22 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=35.6
Q ss_pred EEEEEc--CccHHHHHHHHHHHhcCCCCcceeEEE--CCeecCCCCChhhcCCCCCC
Q 045424 29 RFFQFN--HDVEIKRLLIKYCETKSQPFKSTPFLI--NGNRFDYSKTADQLGLKDGD 81 (98)
Q Consensus 29 ~~f~Ik--~~t~l~kL~~~y~~~~g~~~~~~rF~f--dG~~l~~~~Tp~~l~medgD 81 (98)
+.+-|. ....|..|++...+..+++...+|=+| +|.+|.. .++| +||+
T Consensus 30 ~~v~i~~~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~---l~dl--~dg~ 81 (108)
T 2dnf_A 30 SRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVES---GAEL--ENGQ 81 (108)
T ss_dssp EEEEECHHHHTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESS---TTSC--CSSC
T ss_pred EEEEECCccccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCC---HHHh--CCCC
Confidence 566665 456899999999999999876666555 8988853 5555 5777
No 250
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=43.79 E-value=47 Score=19.85 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=23.2
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCccHHHHHH
Q 045424 13 PQHLINLIIKSQDGDKRFFQFNHDVEIKRLL 43 (98)
Q Consensus 13 ~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~ 43 (98)
+...++|++...+|....|.+...++|....
T Consensus 3 ~~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 3 SGDKITVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred CCceEEEEEECCCCCEEEEEECCCChHHHHH
Confidence 4556888888788988889999988776543
No 251
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=43.65 E-value=15 Score=20.16 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=17.4
Q ss_pred ChhhcCCCCCCEEEEEceecCC
Q 045424 71 TADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 71 Tp~~l~medgD~Idv~~~q~GG 92 (98)
.+.+|.+.-||+|.|.-+..+|
T Consensus 21 ~~~eLs~~~Gd~i~v~~~~~~g 42 (67)
T 2eyx_A 21 DKTALALEVGELVKVTKINVSG 42 (67)
T ss_dssp CSSBCCBCSSEEEEEEEECTTS
T ss_pred CCCccccCCCCEEEEEEecCCC
Confidence 5669999999999998664443
No 252
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=43.65 E-value=18 Score=19.81 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.6
Q ss_pred ChhhcCCCCCCEEEEEceecCC
Q 045424 71 TADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 71 Tp~~l~medgD~Idv~~~q~GG 92 (98)
.+.+|.+.-||+|.|.-+.-+|
T Consensus 16 ~~~eLsf~~Gd~i~v~~~~~~~ 37 (67)
T 2bzy_A 16 DKTALALEVGDIVKVTRMNING 37 (67)
T ss_dssp CTTBCCBCTTCEEEEEEECSSS
T ss_pred CCCccccCCCCEEEEEEecCCC
Confidence 5779999999999987665443
No 253
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=43.55 E-value=22 Score=19.96 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.3
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.++-||+|.|.-+.-.
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~~ 38 (73)
T 2lcs_A 17 ENDNELRLAEGDIVFISYKHGQ 38 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEEETT
T ss_pred CCCCccCCcCCCEEEEEEEcCC
Confidence 4678999999999998765433
No 254
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.26 E-value=17 Score=20.47 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=18.2
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (78)
T 2yuo_A 19 HDDDELGFRKNDIITIISQKDEH 41 (78)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCCccCCCCCEEEEEEecCCC
Confidence 35779999999999998655444
No 255
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=42.91 E-value=14 Score=21.51 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=18.6
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...+.+|.++-||+|.|.-+..+|
T Consensus 30 a~~~~eLsf~~GDiI~V~~~~~~g 53 (83)
T 2ke9_A 30 LHDPTALNVRAGDVITVLEQHPDG 53 (83)
T ss_dssp CSCTTBCCBCTTCEEEESCSSCSS
T ss_pred CCCCCcccccCCCEEEEEEecCCC
Confidence 356789999999999997655444
No 256
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=42.85 E-value=19 Score=21.21 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=19.6
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...++++.|+.||+|+|.-+--.|
T Consensus 18 ~~~~~ei~lk~Gd~VeVl~k~~~g 41 (71)
T 1v1c_A 18 GAEQDAITLREGQYVEVLDAAHPL 41 (71)
T ss_dssp SCCTTBCCBCTTCEEEEEEEEETT
T ss_pred CCCcceeeecCCCEEEEEEcCCCC
Confidence 456779999999999998776555
No 257
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=42.73 E-value=23 Score=19.32 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=18.5
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-.|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (70)
T 2cuc_A 19 HRPEELDLQKGEGIRVLGKYQDG 41 (70)
T ss_dssp CSTTBCCBCTTCEEEEEEEEETT
T ss_pred CCCCcCCCCCCCEEEEEEecCCC
Confidence 46789999999999998765443
No 258
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=42.68 E-value=8 Score=29.74 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=30.1
Q ss_pred EEEEEcCccHHHHHHHHHHHhcC--CCCcc--------eeEEECCe--------ecCCCCChhhcCCCCCCEEEEE
Q 045424 29 RFFQFNHDVEIKRLLIKYCETKS--QPFKS--------TPFLINGN--------RFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 29 ~~f~Ik~~t~l~kL~~~y~~~~g--~~~~~--------~rF~fdG~--------~l~~~~Tp~~l~medgD~Idv~ 86 (98)
..+.+..+.+++.+.+.+|++.. +.... .+.+|+.. +-+-+.|..+|++++|++|.|.
T Consensus 343 ~~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 343 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp BCCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECC
T ss_pred ceEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 44556666678889999999754 32222 34566532 1123678899999999988764
No 259
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=42.43 E-value=24 Score=19.19 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=17.2
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.++-||+|.|.-+...
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~ 40 (68)
T 2djq_A 19 KNPGDLKFNKGDVILLRRQLDE 40 (68)
T ss_dssp CCTTCCCCCTTCEEEEEECCCS
T ss_pred CCcCCccCCCCCEEEEEEecCC
Confidence 4677999999999999655333
No 260
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.43 E-value=17 Score=21.12 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.6
Q ss_pred ChhhcCCCCCCEEEEEceecCC
Q 045424 71 TADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 71 Tp~~l~medgD~Idv~~~q~GG 92 (98)
.+.+|.++-||+|.|.-+.-+|
T Consensus 31 ~~~eLsf~~Gd~i~v~~~~~~~ 52 (88)
T 2dbk_A 31 DKTALALEVGDIVKVTRMNING 52 (88)
T ss_dssp CSSBCCBCTTCEEEEEEECTTS
T ss_pred CCCcccCCCCCEEEEEEecCCC
Confidence 6788999999999997664443
No 261
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=42.38 E-value=21 Score=19.60 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.0
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (71)
T 2jt4_A 18 ESQDELTIKSGDKVYILDDK 37 (71)
T ss_dssp SSTTBCCBCTTCEEEEEESS
T ss_pred CCCCcccCCCCCEEEEEECC
Confidence 46789999999999998764
No 262
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=42.33 E-value=21 Score=19.86 Aligned_cols=20 Identities=25% Similarity=0.528 Sum_probs=17.0
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 14 ~~~~eLs~~~Gd~i~vl~~~ 33 (69)
T 2ydl_A 14 QNDDELTIKEGDIVTLINKD 33 (69)
T ss_dssp CSTTBCCBCTTCEEEEEESC
T ss_pred CCCCccccCCCCEEEEEEcC
Confidence 46789999999999998764
No 263
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.26 E-value=25 Score=19.21 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=17.0
Q ss_pred CChhhcCCCCCCEEEEEceec
Q 045424 70 KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+.+|.++-||+|.|.-+.-
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~ 39 (68)
T 1x2k_A 19 RTPDELYFEEGDIIYITDMSD 39 (68)
T ss_dssp CSTTBCCCCSSCEEEEEECSC
T ss_pred CCCCcccCCCCCEEEEEEcCC
Confidence 456799999999999986643
No 264
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.24 E-value=25 Score=19.11 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=18.2
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (68)
T 1x2p_A 19 TDETQLSFLRGEKILILRQTTAD 41 (68)
T ss_dssp SSTTBCCCCTTCEEEEEECCSSS
T ss_pred CCcCCcCCCCCCEEEEEEcCCCC
Confidence 46789999999999998765443
No 265
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=42.22 E-value=12 Score=20.95 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=22.8
Q ss_pred ECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 61 INGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 61 fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
=.|+-+-|.+--+.|+++.||.+++.++
T Consensus 20 ~kGqItIPkeiR~~Lgi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 20 ELGRVVIPIELRRTLGIAEKDALEIYVD 47 (59)
T ss_dssp TTCEEECCHHHHHHTTCCTTCEEEEEEE
T ss_pred CCCEEEeCHHHHHHcCCCCCCEEEEEEE
Confidence 3577777777888999999999998875
No 266
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=42.22 E-value=40 Score=19.11 Aligned_cols=54 Identities=7% Similarity=-0.067 Sum_probs=36.7
Q ss_pred EEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCC--ChhhcCCCCCCEEEEEceecC
Q 045424 30 FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSK--TADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 30 ~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~--Tp~~l~medgD~Idv~~~q~G 91 (98)
.-.|.+..| |++.|+....+-+.+||..+.... ....+--..|+.|.+.+..-|
T Consensus 31 V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g 86 (91)
T 2pkt_A 31 ISRVTPGSK--------AALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSE 86 (91)
T ss_dssp EEEECTTSH--------HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEEC
T ss_pred EEEECCCCH--------HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 345555555 566789999999999999998755 332222227888888876544
No 267
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=42.20 E-value=22 Score=19.14 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=17.0
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 19 IHPDDLSFKKGEKMKVLEEH 38 (65)
T ss_dssp CSSSCCCBCTTCEEEEEEEC
T ss_pred cCCCcCCCCCCCEEEEEEcC
Confidence 45678999999999998766
No 268
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=41.47 E-value=18 Score=18.91 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=23.2
Q ss_pred EEEEEEcCccHHHHHHHHHHHhcCCCCcc
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETKSQPFKS 56 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~ 56 (98)
...+.|+-+..+..-++.||+..|++.+.
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g~s~s~ 37 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKNLTLSD 37 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTCCHHH
T ss_pred cceEEEEcCHHHHHHHHHHHHHhCCCHHH
Confidence 45667777889999999999999987543
No 269
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=41.05 E-value=70 Score=20.55 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=49.1
Q ss_pred CEEEEEEcCccHHHHHHHHHHH-h-------cCCCCcceeEEECCeecCC--CCChhhcCCCCCCEEEEEc
Q 045424 27 DKRFFQFNHDVEIKRLLIKYCE-T-------KSQPFKSTPFLINGNRFDY--SKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 27 ~~~~f~Ik~~t~l~kL~~~y~~-~-------~g~~~~~~rF~fdG~~l~~--~~Tp~~l~medgD~Idv~~ 87 (98)
....|.+.+++||..|.+..-. . ..++.+++..+-+|+...+ +.|.++.|+.-=+.|.+..
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~T 108 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTT 108 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEEC
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeC
Confidence 4578999999999999865432 2 2446678899999999986 6799999999999998763
No 270
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=41.04 E-value=65 Score=20.19 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=37.0
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEE-CCeec
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLI-NGNRF 66 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~f-dG~~l 66 (98)
...+.||... .|....+.+.+.-.|+.|..+..+.+|.+ +-+.| |-+.+
T Consensus 6 ~~dvRiKfE~-~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~n~Ell 55 (103)
T 2cu1_A 6 SGDVRVKFEH-RGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTNNELV 55 (103)
T ss_dssp SCEEEEEEEE-TTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEECSSSSC
T ss_pred cCcEEEEEEe-cCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEecceEE
Confidence 4567777754 77788899999999999999999999985 44444 44433
No 271
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=40.96 E-value=25 Score=18.68 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=17.9
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+...|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (65)
T 3u23_A 19 QNEDELELKVGDIIDINEEVEEG 41 (65)
T ss_dssp SSTTBCCBCTTCEEEEEEEEETT
T ss_pred CCcCCcCCCCCCEEEEEEecCCC
Confidence 46788999999999988654443
No 272
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=40.77 E-value=25 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=14.3
Q ss_pred hhhcCCCCCCEEEEE
Q 045424 72 ADQLGLKDGDEIDAM 86 (98)
Q Consensus 72 p~~l~medgD~Idv~ 86 (98)
+.+|.+.-||+|.|.
T Consensus 37 ~~eLsf~~Gd~i~v~ 51 (96)
T 1wie_A 37 EAELPLTAGKYLYVY 51 (96)
T ss_dssp TTBCCCCTTCEEEEE
T ss_pred CCeeeECCCCEEEEe
Confidence 889999999999998
No 273
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=40.58 E-value=35 Score=20.56 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=30.6
Q ss_pred EEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCCh-hhcCCCCCCEE
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTA-DQLGLKDGDEI 83 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp-~~l~medgD~I 83 (98)
..+|.+.+..-+.+|.+.+++..+++.. .|.++.+. ++||+..=+.+
T Consensus 17 ~~~~~m~~mei~~~l~~iiae~l~~~~~---------~I~~d~~l~~dLGlDSL~~v 64 (101)
T 4dxe_H 17 NLYFQSNAMENFDKVKDIIVDRLGVDAD---------KVTEDASFKDDLGADSLDIA 64 (101)
T ss_dssp -------CTTHHHHHHHHHHHTTCCCGG---------GCCTTCBTTTTSCCCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHCcChh---------hCCCCCcchhhcCCCcHHHH
Confidence 3588899988999999999999987654 46777777 78887654433
No 274
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.53 E-value=21 Score=20.21 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.6
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.++-||+|.|.-+
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~ 47 (79)
T 1x6b_A 29 KQADEVTLQQADVVLVLQQ 47 (79)
T ss_dssp CSSSBCCCCTTEEEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEEe
Confidence 4568999999999999877
No 275
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.46 E-value=23 Score=19.42 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=18.0
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+...|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (68)
T 2dmo_A 19 ETKEELQVMPGNIVFVLKKGNDN 41 (68)
T ss_dssp CSSSSCCCCTTCEEEECEECSSS
T ss_pred CCcCCCCCCCCCEEEEEEeCCCC
Confidence 46778999999999998664443
No 276
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=39.90 E-value=36 Score=27.47 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=45.8
Q ss_pred EEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 18 NLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 18 ~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
.+.+...++....|.......+..|+..|.+-..-...-.+=++|-.. .+.+.|..|.+.-||+|.+.-+
T Consensus 537 ~ftl~~~~~~~~~F~T~~a~~I~~LI~~yi~~Lk~rs~~~~Al~d~~~-~~~~~~~~L~f~kGDlI~l~~~ 606 (655)
T 3pvl_A 537 SFTLATIKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSKYVVALQDNPN-PAGEESGFLSFAKGDLIILDHD 606 (655)
T ss_dssp EEEEEETTSCEEEEECTTHHHHHHHHHHHHHHHHHHCCEEEESSCCCC------CCBCCCCTTCEEEESSC
T ss_pred EEEEEeccCceEEEEcCCHHHHHHHHHHHHHHHhhcchhhhHHhhccc-CCCCCCCcccccCCCEEEEccc
Confidence 344445567778899999999999999999854322223333334321 1245678999999999988765
No 277
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=39.06 E-value=26 Score=19.14 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=18.0
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 15 ~~~~eLsf~~Gd~i~v~~~~~~~ 37 (65)
T 1b07_A 15 NDEEDLPFKKGDILRIRDKPEEQ 37 (65)
T ss_dssp SSTTBCCBCTTCEEEEEECSSSS
T ss_pred CCCCccCCcCCCEEEEEEecCCC
Confidence 45678999999999998765444
No 278
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.79 E-value=28 Score=19.65 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=18.1
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-.|
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~~g 51 (78)
T 2ed0_A 29 DKEDELSFQEGAIIYVIKKNDDG 51 (78)
T ss_dssp SSTTBCCBCSSCEEEEEEECSSS
T ss_pred cCcCcccccCCCEEEEEEeCCCC
Confidence 45779999999999998765443
No 279
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.79 E-value=24 Score=20.12 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=18.1
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.+.-||+|.|.-+..+
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~~ 50 (81)
T 1x6g_A 29 PKPGELAFRKGDVVTILEACEN 50 (81)
T ss_dssp CCTTCCCBCTTCEEEEEECCCS
T ss_pred CCCCCCCCCCCCEEEEEeccCC
Confidence 4678899999999999876544
No 280
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=38.76 E-value=28 Score=18.58 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=17.3
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.+.-||+|.|.-+.-.
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~~~ 42 (65)
T 3ulr_B 21 AGDDEISFDPDDIITNIEMIDD 42 (65)
T ss_dssp CSTTBCCBCTTCEEEEEECCSS
T ss_pred CCcCEeeEecCCEEEEEEecCC
Confidence 4577899999999998765433
No 281
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.66 E-value=22 Score=19.54 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=18.6
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...+.+|.++-||+|.|.-+...|
T Consensus 19 ~~~~~eLs~~~Gd~i~v~~~~~~~ 42 (71)
T 2dnu_A 19 SQSKDEIGFEKGVTVEVIRKNLEG 42 (71)
T ss_dssp CSSTTBCCBCTTCEEEECCCCSSS
T ss_pred CCCCCCCcCCCCCEEEEeECCCCC
Confidence 456789999999999997654443
No 282
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=38.57 E-value=16 Score=20.46 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=16.7
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 21 TADDELSFKRGDILKVLNEE 40 (74)
T ss_dssp SSTTBCCBCTTCEEECCBCS
T ss_pred CCCCeeeEcCCCEEEEeEec
Confidence 46779999999999987655
No 283
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.51 E-value=26 Score=19.41 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=18.5
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~~~~ 43 (72)
T 2dl8_A 21 RTARELSFKKGASLLLYQRASDD 43 (72)
T ss_dssp SSSSBCCBCTTCEEEEEEEEETT
T ss_pred CCCCEeccCCCCEEEEEeecCCC
Confidence 46789999999999998765444
No 284
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=38.38 E-value=28 Score=19.65 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=18.1
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-.|
T Consensus 29 ~~~~eLsf~~Gd~i~Vl~~~~~g 51 (72)
T 2l0a_A 29 AEDNELTFKAGEIITVLDDSDPN 51 (72)
T ss_dssp SSTTBCCBCTTCEEEEEEEEETT
T ss_pred CCCCccCCCCCCEEEEEEecCCC
Confidence 45778999999999998765443
No 285
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=38.33 E-value=25 Score=19.19 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=17.6
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.++-||+|.|.-+...
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~~~ 41 (69)
T 2dil_A 20 QNPDELDLSAGDILEVILEGED 41 (69)
T ss_dssp SSSSSCCBCTTCEEEEEECCSS
T ss_pred cCcCccCCCCCCEEEEEECCCC
Confidence 4577999999999999876433
No 286
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.19 E-value=26 Score=19.10 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=18.1
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-.|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~g 41 (70)
T 2ct3_A 19 QNEDELELREGDRVDVMQQCDDG 41 (70)
T ss_dssp SSTTBCCBCTTEEEEEEEECSSS
T ss_pred CCcCCccCCCCCEEEEEEECCCC
Confidence 46779999999999997664433
No 287
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=38.15 E-value=28 Score=19.75 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=18.3
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+..+|
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~~~ 36 (80)
T 2pqh_A 14 KSPREVTMKKGDILTLLNSTNKD 36 (80)
T ss_dssp CSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCccCCCCCCEEEEEEecCCC
Confidence 45779999999999998765444
No 288
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.09 E-value=18 Score=19.85 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=18.3
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+...|
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~~~~ 42 (70)
T 2ega_A 20 QENSELSLQAGEVVDVIEKNESG 42 (70)
T ss_dssp CSSSSCCCCTTCBCEEEEECTTS
T ss_pred CCCCcccCCCCCEEEEEEccCCC
Confidence 46789999999999998764443
No 289
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=38.06 E-value=70 Score=19.96 Aligned_cols=73 Identities=8% Similarity=-0.017 Sum_probs=52.8
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcce---eEEECCeecC--CCCChhhcCCCCCCEEEEEc
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKST---PFLINGNRFD--YSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~---rF~fdG~~l~--~~~Tp~~l~medgD~Idv~~ 87 (98)
+.|..+|-..+...++++++.+..-+.|+.+.+++.+...+.+ ...+.|+++- +++..-.-.|.-...|-|..
T Consensus 8 D~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~ 85 (104)
T 1wgy_A 8 EEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYR 85 (104)
T ss_dssp SCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEE
T ss_pred CceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEee
Confidence 4566777778888999999999999999999999998754333 4567898764 45555444455555555544
No 290
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.66 E-value=25 Score=19.68 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=16.6
Q ss_pred ChhhcCCCCCCEEEEEcee
Q 045424 71 TADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 71 Tp~~l~medgD~Idv~~~q 89 (98)
.+.+|.+.-||+|.|.-+.
T Consensus 23 ~~~eLs~~~Gd~i~v~~~~ 41 (77)
T 2enm_A 23 GNNELTVTEGEIITVTNPN 41 (77)
T ss_dssp TSSBCCCCTTCEEEEEESC
T ss_pred CCCeecCCCCCEEEEeEcc
Confidence 6779999999999998764
No 291
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=37.57 E-value=32 Score=18.66 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=18.1
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~~ 40 (69)
T 4esr_A 18 NRSDELTIHRGDIIRVFFKDNED 40 (69)
T ss_dssp CSTTBCCBCTTCEEEEEEECSSS
T ss_pred CCcCcCCCCCCCEEEEEEecCCC
Confidence 46789999999999998654443
No 292
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=37.46 E-value=27 Score=19.93 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=18.0
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 17 ~~~~eLs~~~Gd~i~vl~~~~~~ 39 (79)
T 3cqt_A 17 RTEDDLSFHKGEKFQILNSSEGD 39 (79)
T ss_dssp CSTTBCCBCTTCEEEEEECTTSS
T ss_pred CCcCcCCCCCCCEEEEEEecCCC
Confidence 46789999999999998654443
No 293
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=37.43 E-value=33 Score=18.10 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.1
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.+.-||+|.|.-+.-.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~ 39 (64)
T 4f14_A 18 QDEDEVSFRDGDYIVNVQPIDD 39 (64)
T ss_dssp CSTTBCCBCTTCEEEEEEECSS
T ss_pred cCCCcCCCCCCCEEEEEEeCCC
Confidence 4677899999999998765433
No 294
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}
Probab=37.24 E-value=21 Score=19.57 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=18.4
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-+|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (70)
T 2ecz_A 19 DTQVEMSFRKGERITLLRQVDEN 41 (70)
T ss_dssp CSTTBCCCCTTCBCEEEEEEETT
T ss_pred CCcCCcCCCCCCEEEEEEecCCC
Confidence 46789999999999998765444
No 295
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=37.11 E-value=65 Score=19.09 Aligned_cols=65 Identities=14% Similarity=0.306 Sum_probs=45.9
Q ss_pred EEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEE-E----CCe--ecCCCCChhhcCCCCCCEEEEE
Q 045424 19 LIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFL-I----NGN--RFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 19 I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~-f----dG~--~l~~~~Tp~~l~medgD~Idv~ 86 (98)
|++.-++++...+.+++..++..-..+-.++.|+.++.+..+ . .|. +|.=+.-..+|. |++|.|-
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~~~~~~~~~~~~~i~WdtD~~~L~---~eEl~Ve 75 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLI---GEELQVD 75 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEEGGGSSEEEEECTTSBGGGGT---TCEEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEeccCCCCCccccchhHhhhhcc---CceEEEE
Confidence 344448888889999999999999999999999988766544 3 352 444454455443 6666654
No 296
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.88 E-value=31 Score=19.57 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=18.6
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...+.+|.+.-||+|.|.-+...|
T Consensus 19 ~~~~~eLs~~~Gd~i~vl~~~~~g 42 (80)
T 2ekh_A 19 KVQDSEISFPAGVEVQVLEKQESG 42 (80)
T ss_dssp CSSTTSCCBCTTCEEEEEEECTTS
T ss_pred CCCCCccCcCCCCEEEEEEeCCCC
Confidence 356789999999999998665443
No 297
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=36.88 E-value=24 Score=20.12 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=16.0
Q ss_pred CChhhcCCCCCCEEEEEc
Q 045424 70 KTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~ 87 (98)
..+.+|.++-||+|.|.-
T Consensus 17 ~~~~eLs~~~Gd~I~V~~ 34 (83)
T 3i5r_A 17 EREEDIDLHLGDILTVNK 34 (83)
T ss_dssp CSTTBCCBCTTCEEEEEH
T ss_pred CCCCccccCCCCEEEEee
Confidence 478899999999999984
No 298
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=36.70 E-value=13 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=16.4
Q ss_pred CChhhcCCCCCCEEEEEceec
Q 045424 70 KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+.+|.++-||+|.|.-+..
T Consensus 22 ~~~~eLsf~~Gd~i~v~~~~~ 42 (72)
T 1ugv_A 22 EHDSELSFTAGTVFDNVHPSQ 42 (72)
T ss_dssp CSSSBCCBCTTCEEBSCCBCS
T ss_pred cCCCEeCCcCCCEEEEEEecC
Confidence 456789999999999876433
No 299
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=36.68 E-value=32 Score=18.09 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=18.7
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...+.+|.+.-||+|.|.-+.-+|
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~~~~~~ 40 (62)
T 3ngp_A 17 EKSPRELTVKKGDILTLLNSTNKD 40 (62)
T ss_dssp CCSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCCCccCCCCCEEEEeEecCCC
Confidence 346789999999999997765443
No 300
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=36.66 E-value=22 Score=19.90 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.4
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 22 ~~~~eLsf~~Gd~i~v~~~~ 41 (76)
T 2ed1_A 22 DNDDELTFIEGEVIIVTGEE 41 (76)
T ss_dssp SSSSBCCCCSSCEEEESSCC
T ss_pred CCcCCcCcCCCCEEEEEEec
Confidence 56779999999999997543
No 301
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=36.49 E-value=24 Score=18.66 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=16.4
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 13 RNSSELSVMKDDVLEILDD 31 (60)
T ss_dssp SSTTBCCBCTTCEEEECGG
T ss_pred CCCCcccCCCCCEEEEEEc
Confidence 4677999999999999776
No 302
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1
Probab=36.47 E-value=17 Score=20.15 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=16.1
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
+.+.+|.++-||+|.|.-+
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~ 38 (72)
T 1spk_A 20 NNKTLLSFAQGDVLTLLIP 38 (72)
T ss_dssp SCSSBCCBCTTCEEEECCS
T ss_pred CCCCCCcCCCCCEEEEeEc
Confidence 4678899999999999765
No 303
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=36.36 E-value=28 Score=18.93 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=18.1
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~~~ 36 (67)
T 1gl5_A 14 TEAHDLRLERGQEYIILEKNDLH 36 (67)
T ss_dssp SSSSBCCBCTTCEEEEEECSSSS
T ss_pred CCCCeecCCcCCEEEEEEccCCC
Confidence 46779999999999998764333
No 304
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=36.20 E-value=30 Score=22.94 Aligned_cols=64 Identities=16% Similarity=0.048 Sum_probs=43.4
Q ss_pred EEEEEEcCccHHHHHHHHHHHhcCCCC-----cceeEEE-C---C-------------ee-cCCCCChhhcCCCCCCEEE
Q 045424 28 KRFFQFNHDVEIKRLLIKYCETKSQPF-----KSTPFLI-N---G-------------NR-FDYSKTADQLGLKDGDEID 84 (98)
Q Consensus 28 ~~~f~Ik~~t~l~kL~~~y~~~~g~~~-----~~~rF~f-d---G-------------~~-l~~~~Tp~~l~medgD~Id 84 (98)
++++..=++.+|..|-....+..--.. =.++|.| | | .+ -.++.|..++...-||.|+
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 134 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLD 134 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEE
Confidence 578888889999998877766432211 1333333 3 2 22 1357899999999999999
Q ss_pred EEceecC
Q 045424 85 AMYHAFG 91 (98)
Q Consensus 85 v~~~q~G 91 (98)
|.+-..+
T Consensus 135 vaI~pP~ 141 (143)
T 4a6q_A 135 IAITPPN 141 (143)
T ss_dssp EEEECGG
T ss_pred EEEeCCC
Confidence 9886543
No 305
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=36.08 E-value=33 Score=18.05 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=16.9
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 15 EESGDLPFRKGDVITILKKS 34 (60)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCEeeEcCCCEEEEEEeC
Confidence 46789999999999998764
No 306
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=35.91 E-value=27 Score=18.60 Aligned_cols=19 Identities=16% Similarity=0.506 Sum_probs=16.4
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 18 SHDGDLGFEKGEQLRILEQ 36 (62)
T ss_dssp CSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEc
Confidence 5678999999999999866
No 307
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=35.77 E-value=16 Score=19.90 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=16.1
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (67)
T 2kxc_A 19 SNKTLLSFAQGDVITLLIP 37 (67)
T ss_dssp SCSSBCCBCTTCEEEESSS
T ss_pred CCCCCCcCCCCCEEEEeEC
Confidence 4677899999999999764
No 308
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.74 E-value=31 Score=18.86 Aligned_cols=20 Identities=25% Similarity=0.528 Sum_probs=17.0
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (70)
T 2da9_A 19 QNDDELTIKEGDIVTLINKD 38 (70)
T ss_dssp SSTTBCCCCTTEEEEEEECC
T ss_pred CCcCEeeEcCCCEEEEEECC
Confidence 56789999999999998764
No 309
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=35.64 E-value=17 Score=20.14 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=14.4
Q ss_pred hcCCCCCCEEEEEceecCC
Q 045424 74 QLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 74 ~l~medgD~Idv~~~q~GG 92 (98)
+|.++-||+|.|.-+.-+|
T Consensus 20 ~Ls~~~Gd~i~v~~~~~~~ 38 (60)
T 2lx7_A 20 GLRFAAGELITLLQVPDGG 38 (60)
T ss_dssp CCCCCTTCEEEBSCCCTTS
T ss_pred CccCCCCCEEEEeEecCCC
Confidence 4999999999986554443
No 310
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.61 E-value=31 Score=19.93 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=17.9
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~~~ 51 (88)
T 1x2q_A 29 VEDNELTFKHGEIIIVLDDSDAN 51 (88)
T ss_dssp CSSSCCCCCSSCEEEEEECSCSS
T ss_pred CCcCccCCCCCCEEEEEEeCCCC
Confidence 45678999999999998764443
No 311
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.60 E-value=31 Score=19.37 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=17.7
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-+|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (79)
T 2yun_A 19 RQDDELNLEKGDIVIIHEKKEEG 41 (79)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCCcCCCCCCEEEEEEcCCCC
Confidence 46779999999999987654443
No 312
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.54 E-value=36 Score=19.15 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=17.9
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+..+|
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~~~~~ 51 (79)
T 1x69_A 29 AGDDEISFDPDDIITNIEMIDDG 51 (79)
T ss_dssp SSSSBCCCCTTCEEEEEEECSSS
T ss_pred CCCCCcCcCCCCEEEEeEecCCC
Confidence 45678999999999998654443
No 313
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=35.49 E-value=23 Score=19.69 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=17.8
Q ss_pred ChhhcCCCCCCEEEEEceecCC
Q 045424 71 TADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 71 Tp~~l~medgD~Idv~~~q~GG 92 (98)
.+.+|.+.-||+|.|.-+.-+|
T Consensus 12 ~~~eLs~~~Gd~i~v~~~~~~~ 33 (73)
T 2kxd_A 12 GGREVTMKKGDILTLLNSTNKD 33 (73)
T ss_dssp CSCCCCBCTTCEEEEEECCSSS
T ss_pred CCCEeeEcCCCEEEEEEecCCC
Confidence 5788999999999998765444
No 314
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=35.29 E-value=23 Score=19.68 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCCCc
Q 045424 42 LLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGGGH 94 (98)
Q Consensus 42 L~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG~~ 94 (98)
|+..|++ +-.+.+...+|| |++.|--++.||..
T Consensus 23 likvfae---lgyndinvtwdg-----------------dtvtvegqleggsl 55 (62)
T 2gjh_A 23 LIKVFAE---LGYNDINVTWDG-----------------DTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHHHHH---TTCCSCEEEECS-----------------SCEEEEEECCCCCC
T ss_pred HHHHHHH---hCcccceeEEcC-----------------CEEEEEeEEcCCcc
Confidence 4455555 234566677765 66666666677753
No 315
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1
Probab=35.27 E-value=31 Score=20.02 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=18.4
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 29 ~~~~eLsf~~Gd~i~Vl~~~~~g 51 (83)
T 1neg_A 29 KSPREVTMKKGDILTLLNSTNKD 51 (83)
T ss_dssp SSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCccccCCCCEEEEEEecCCC
Confidence 56789999999999998764443
No 316
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=35.24 E-value=32 Score=18.86 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=18.1
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 27 ~~~~eLs~~~Gd~i~v~~~~~~~ 49 (73)
T 3h0h_A 27 ITEDDLSFHKGEKFQILNSSEGD 49 (73)
T ss_dssp SSTTBCCBCTTCEEEEEECSSSS
T ss_pred CCCCcceEeCCCEEEEEEecCCC
Confidence 45789999999999997655443
No 317
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=34.83 E-value=26 Score=18.80 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=16.8
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (64)
T 2jte_A 18 TNEDELTFREGEIIHLISKE 37 (64)
T ss_dssp SSSSBCCBCTTCEEEEEESC
T ss_pred cCCCccCCCCCCEEEEEECC
Confidence 46779999999999998654
No 318
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.77 E-value=38 Score=18.68 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.3
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 20 QTDDELSFPEGAIIRILNK 38 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCcCCCCCCCEEEEEEC
Confidence 4678899999999999876
No 319
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A
Probab=34.70 E-value=23 Score=20.75 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=19.9
Q ss_pred ceeEEECCeecCCCCChhhcCCCCCCEEEEE
Q 045424 56 STPFLINGNRFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 56 ~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~ 86 (98)
.++-+|+-.. +.+.+|.++-||+|.|.
T Consensus 13 ~~~Alydy~a----~~~~ELsf~~GD~I~V~ 39 (90)
T 3o5z_A 13 QYRALYPFRR----ERPEDLELLPGDVLVVS 39 (90)
T ss_dssp EEEECSCBCC----CSTTBCCBCTTCEEEEE
T ss_pred EEEEeeeECC----CCCCccCCcCCCEEEEE
Confidence 4455554432 57889999999999997
No 320
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=34.65 E-value=67 Score=18.90 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=38.7
Q ss_pred cCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhc--CCCCCCEEEEEcee
Q 045424 24 QDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL--GLKDGDEIDAMYHA 89 (98)
Q Consensus 24 ~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l--~medgD~Idv~~~q 89 (98)
.++...-+.|.+..|= ..+++.|+....+-..+||+.+........+ .+..|+.+.+.+..
T Consensus 32 ~~~~~~G~~V~~~~pa-----s~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R 94 (105)
T 2i4s_A 32 RDDKVLGYRVSPGKDP-----VLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 94 (105)
T ss_dssp ETTEEEEEEEEECSCT-----HHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEE
T ss_pred cCCcEEEEEEecCCCC-----CHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEE
Confidence 3444334455555442 2345669999999999999999865543322 13578888887743
No 321
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=34.52 E-value=17 Score=19.87 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=17.8
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-+|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (68)
T 1wi7_A 19 QNDDELELKVGDIIEVVGEVEEG 41 (68)
T ss_dssp SSTTBCCBCTTCEECCCEEEETT
T ss_pred CCCCCccCcCCCEEEEEEcCCCC
Confidence 46789999999999987654443
No 322
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=34.27 E-value=1.1e+02 Score=21.80 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=38.7
Q ss_pred CcEEEEEEccCCCEEEEEEcC--ccHHHHHHHHHHHhcCCCC---cceeEEECC----eecCCCCCh
Q 045424 15 HLINLIIKSQDGDKRFFQFNH--DVEIKRLLIKYCETKSQPF---KSTPFLING----NRFDYSKTA 72 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~--~t~l~kL~~~y~~~~g~~~---~~~rF~fdG----~~l~~~~Tp 72 (98)
+.+.|.|.-.||....+.|.. +++-+.| |+..|++. +.+-+++.. ..|.+++-|
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el----~e~lgL~~~~~~~FaL~~~~~~~e~~L~~~~~~ 66 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQI----MEGMRLSQETQQYFTIWICSENLSLQLKPYHKP 66 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHH----HTTSSCCTTGGGGEEEEEECSSCEEECCTTCCH
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHH----HHHhCcCccccCeeEEEEECCccccccCccccH
Confidence 456777777999999999999 8888888 56788853 456766632 245555544
No 323
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.24 E-value=29 Score=19.52 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=17.5
Q ss_pred CChhhcCCCCCCEEEEEceec
Q 045424 70 KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+.+|.++-||+|.|.-+..
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~~ 45 (78)
T 2dl5_A 25 SQPDELTIEEHEVLEVIEDGD 45 (78)
T ss_dssp CSTTBCCBCSSEEEEEEECCS
T ss_pred CCCCCCCCCCCCEEEEEeccC
Confidence 467799999999999987753
No 324
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Probab=34.20 E-value=21 Score=19.38 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=18.3
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~~~~ 42 (67)
T 1aww_A 20 MNANDLQLRKGDEYFILEESNLP 42 (67)
T ss_dssp SSSSSCCCCSSCEEECCCCCSSS
T ss_pred CCCCCccCCCCCEEEEEEccCCC
Confidence 46789999999999998765444
No 325
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=34.09 E-value=29 Score=18.92 Aligned_cols=21 Identities=19% Similarity=0.514 Sum_probs=17.3
Q ss_pred CCChhhcCCCCCCEEEEEcee
Q 045424 69 SKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q 89 (98)
...+.+|.+.-||+|.|.-+.
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~~~ 34 (69)
T 1wyx_A 14 AESPDELSFRKGDIMTVLEQD 34 (69)
T ss_dssp CSSTTBCCBCTTCEEEEEETT
T ss_pred cCCCCccCCcCCCEEEEeECC
Confidence 346789999999999998765
No 326
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.93 E-value=27 Score=19.12 Aligned_cols=19 Identities=11% Similarity=0.372 Sum_probs=16.3
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 1wxb_A 19 RNANELSVLKDEVLEVLED 37 (68)
T ss_dssp SSSSBCCBCTTCEEEEEEC
T ss_pred CCCCccCCCCCCEEEEEEc
Confidence 4678999999999999865
No 327
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.80 E-value=17 Score=19.90 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=18.0
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+..+|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (69)
T 2eqi_A 19 KRSDELTFCRGALIHNVSKEPGG 41 (69)
T ss_dssp CSSSCCCBCTTCEEESCCCCSSS
T ss_pred CCcCccCCCCCCEEEEEEcCCCC
Confidence 45779999999999987665444
No 328
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.77 E-value=24 Score=20.55 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=18.1
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~~~ 51 (90)
T 2yup_A 29 DLEVELSFRKGEHICLIRKVNEN 51 (90)
T ss_dssp CSSSBCCCCTTCEEEESSCCCSS
T ss_pred CCcCcCCCCCCCEEEEEEEcCCC
Confidence 46788999999999998764443
No 329
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}
Probab=33.33 E-value=25 Score=19.86 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=18.3
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 3 ~~~~eLs~~~Gd~i~v~~~~~~~ 25 (77)
T 2jmc_A 3 MGPREVTMKKGDILTLLNSTNKD 25 (77)
T ss_dssp SSSCCCCCCTTCEEECCCCCCSS
T ss_pred cCCCccCCCCCCEEEEEEecCCC
Confidence 46789999999999998765444
No 330
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1
Probab=33.30 E-value=38 Score=18.54 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=22.6
Q ss_pred ceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 56 STPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 56 ~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
.++-+||- ....+.+|.+.-||+|.|.-+...|
T Consensus 7 ~~~al~dy----~~~~~~eLs~~~Gd~i~v~~~~~~~ 39 (73)
T 3thk_A 7 LVLALYDY----QEKSPREVTMKKGDILTLLNSTNKD 39 (73)
T ss_dssp EEEECSCB----CCCSTTBCCBCTTCEEEEEECCSSS
T ss_pred EEEECcCC----CcCCCCccCCCCCCEEEEEECCCCC
Confidence 34445543 2346789999999999998764443
No 331
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=32.92 E-value=35 Score=20.09 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=16.9
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.++-||+|.|.-+.
T Consensus 41 ~~~~ELsf~~GD~I~Vl~~~ 60 (89)
T 2rf0_A 41 AGDEELTLRRGDRVQVLSQD 60 (89)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCccccCCCCEEEEEecc
Confidence 45779999999999998764
No 332
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=32.86 E-value=37 Score=18.69 Aligned_cols=20 Identities=25% Similarity=0.528 Sum_probs=16.9
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~ 40 (73)
T 2k9g_A 21 QNDDELTIKEGDIVTLINKD 40 (73)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCeeeECCCCEEEEEECC
Confidence 46789999999999998663
No 333
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=32.82 E-value=1.1e+02 Score=22.91 Aligned_cols=52 Identities=6% Similarity=0.121 Sum_probs=37.5
Q ss_pred cCCCEEEEEEcCccHHHHHHHHHH--HhcCCCC---cceeEEEC----C--eecCCCCChhhc
Q 045424 24 QDGDKRFFQFNHDVEIKRLLIKYC--ETKSQPF---KSTPFLIN----G--NRFDYSKTADQL 75 (98)
Q Consensus 24 ~~g~~~~f~Ik~~t~l~kL~~~y~--~~~g~~~---~~~rF~fd----G--~~l~~~~Tp~~l 75 (98)
.+|....+++...++.+.++...| .+.|++. +-+-|.+. | ..|.++.+..+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 577778999999999999999999 5777633 34444331 2 567777776664
No 334
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}
Probab=32.58 E-value=1.3e+02 Score=21.27 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHhcCCC------C-----cceeEEECCeecCCCCChhhcCCCCCCEEEEEceecCC
Q 045424 37 VEIKRLLIKYCETKSQP------F-----KSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 37 t~l~kL~~~y~~~~g~~------~-----~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+..|.+.|....... . ..++-+||= ....+.+|.+.-||+|.|.-+.-+|
T Consensus 119 ~Sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~al~dy----~~~~~~eLsf~~Gd~i~v~~~~~~~ 181 (308)
T 3qwy_A 119 PDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKF----TGERETDLPFEQGERLEILSKTNQD 181 (308)
T ss_dssp SSHHHHHHHHHHSCSSSCCCCEECCCCCCEEEEESSCB----CCSSTTBCCBCTTCEEEEEECCSSS
T ss_pred CCHHHHHHHHhhcccccchhccccccccceeEEEeceE----cCCCCCcCcCCCCCEEEEEEcCCCC
Confidence 46788888887654321 0 123333332 2457789999999999998655443
No 335
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=32.51 E-value=28 Score=20.39 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.6
Q ss_pred cCCCCCCEEEEEceecCCCc
Q 045424 75 LGLKDGDEIDAMYHAFGGGH 94 (98)
Q Consensus 75 l~medgD~Idv~~~q~GG~~ 94 (98)
-+++.||.|.+.+++.+|++
T Consensus 52 ~~lk~Gd~V~F~~~~~~~~~ 71 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQGNLS 71 (80)
T ss_dssp CCCCTTCEEEEEEEEETTEE
T ss_pred hcCCCCCEEEEEEEEeCCEE
Confidence 35899999999999988753
No 336
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=32.38 E-value=24 Score=19.57 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=17.8
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-+|
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~~ 41 (73)
T 2dbm_A 19 ENEGELGFKEGDIITLTNQIDEN 41 (73)
T ss_dssp CSTTCCCBCTTCEEECCBCSSSS
T ss_pred CCCCCccCCCCCEEEEEEecCCC
Confidence 45779999999999987654443
No 337
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=32.10 E-value=31 Score=18.85 Aligned_cols=19 Identities=16% Similarity=0.543 Sum_probs=16.5
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 1wxt_A 19 RNPRELTVVQGEKLEVLDH 37 (68)
T ss_dssp CSSSBCCBCTTCEEEEEEC
T ss_pred CCcCcCCCCCCCEEEEEEc
Confidence 4678999999999999866
No 338
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.07 E-value=31 Score=20.36 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=16.9
Q ss_pred ChhhcCCCCCCEEEEEceecC
Q 045424 71 TADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 71 Tp~~l~medgD~Idv~~~q~G 91 (98)
.+.+|.+.-||+|.|.-+.-+
T Consensus 38 ~~~eLsf~~Gd~i~vl~~~~~ 58 (97)
T 2csq_A 38 AEEELPFKEGQIIKVYGDKDA 58 (97)
T ss_dssp HTTBCCBCTTCEEEEEEEECT
T ss_pred CCCccCCCCCCEEEEEEecCC
Confidence 466899999999999866543
No 339
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=32.05 E-value=31 Score=18.89 Aligned_cols=20 Identities=15% Similarity=0.430 Sum_probs=16.7
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+-
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~ 39 (68)
T 2k2m_A 20 RNSSELSVKQRDVLEVLDDS 39 (68)
T ss_dssp CSSSBCCBCTTCEEEEEECS
T ss_pred CCCCcccCCCCCEEEEEEcC
Confidence 46779999999999998653
No 340
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=31.95 E-value=44 Score=18.10 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=17.8
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-.|
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~~~~ 47 (72)
T 4glm_A 25 LEPNELDFEVGDKIRILATLEDG 47 (72)
T ss_dssp CSTTBCCBCTTCEEEEEEECSTT
T ss_pred CCCCcCCCCCCCEEEEEEccCCC
Confidence 46778999999999998654333
No 341
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=31.89 E-value=69 Score=18.16 Aligned_cols=55 Identities=5% Similarity=-0.003 Sum_probs=37.6
Q ss_pred EEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhc--CCCCCCEEEEEceecC
Q 045424 29 RFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQL--GLKDGDEIDAMYHAFG 91 (98)
Q Consensus 29 ~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l--~medgD~Idv~~~q~G 91 (98)
+.-.|.+..| |++.|+....+-+.+||..+......+-+ -...|+.|.+.+..-|
T Consensus 37 ~V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g 93 (97)
T 2w4f_A 37 FISRVSEEGP--------AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRER 93 (97)
T ss_dssp EEEEECTTSH--------HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEECCS
T ss_pred EEEEECCCCh--------HHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEEEEeCC
Confidence 3445666655 56778989999999999999875432221 1247888888876544
No 342
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=31.31 E-value=51 Score=18.15 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=16.3
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (72)
T 2jw4_A 19 QQEQELDIKKNERLWLLDD 37 (72)
T ss_dssp SSTTSCCCCTTCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4678999999999999865
No 343
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.29 E-value=43 Score=19.35 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=18.9
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
...+.+|.+.-||+|.|.-+...|
T Consensus 28 ~~~~~eLs~~~Gd~i~v~~~~~~g 51 (88)
T 2cub_A 28 AEREDELSLIKGTKVIVMEKCSDG 51 (88)
T ss_dssp CCSTTBCCCCTTEEEEEEEECTTS
T ss_pred CCCCCCcCCCCCCEEEEEEccCCC
Confidence 346789999999999998765443
No 344
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Probab=31.27 E-value=25 Score=19.07 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=17.8
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-.|
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~~~~ 44 (68)
T 1s1n_A 22 QQVGDLTFKKGEILLVIEKKPDG 44 (68)
T ss_dssp SSSSCCCBCSSEEEEECSCCSSS
T ss_pred CCCCcCCCCCCCEEEEEEcCCCC
Confidence 45779999999999997764433
No 345
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.06 E-value=28 Score=19.32 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=17.4
Q ss_pred CChhhcCCCCCCEEEEEceecC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~G 91 (98)
..+.+|.+.-||+|.|.-+...
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~ 40 (77)
T 2d8j_A 19 RTAEDLSFRAGDKLQVLDTSHE 40 (77)
T ss_dssp SSSSBCCBCTTCCEEEEECCSS
T ss_pred CCCCccCCCCCCEEEEEECCCC
Confidence 4567899999999999876433
No 346
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=31.05 E-value=2e+02 Score=22.78 Aligned_cols=70 Identities=10% Similarity=-0.006 Sum_probs=46.8
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcC-CCCCCEEEEEceecC
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG-LKDGDEIDAMYHAFG 91 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~-medgD~Idv~~~q~G 91 (98)
...+=+.+...++..+.-.|.+..| +++-|+....+-..+||.++...+=-+-+. ...|+.|.+.+..-|
T Consensus 484 ~~~lG~~~~~~~~gv~V~~V~~~sp--------A~~AGL~~GD~I~aInG~~v~~~~l~~~l~~~~~g~~v~l~v~R~g 554 (597)
T 4fgm_A 484 RVNFGAKYKASPQGLDVLNVYHDES--------AYHAGLSAGDKIIAIDHLQATEQSVKRILERYIPGDTVTIHAFRRD 554 (597)
T ss_dssp SCCCSEEEEEETTEEEEEEECTTSH--------HHHHTCCTTCEEEEETTEECCTTTHHHHHTTCCTTCEEEEEEEETT
T ss_pred ccccceEEeccCCeEEEEEeCCCCh--------HHHCCCCCCCEEEEECCEECCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 4456566654444444567777766 556799999999999999995333222233 468999988876533
No 347
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.99 E-value=25 Score=19.72 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=18.3
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~~~~ 44 (76)
T 2epd_A 22 RTAQELSFRRGDVLRLHERASSD 44 (76)
T ss_dssp SSTTBCEECTTCEEEEEEEEETT
T ss_pred CCCCccCCCCCCEEEEEEeCCCC
Confidence 46789999999999998765443
No 348
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=30.88 E-value=31 Score=20.63 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.6
Q ss_pred cCCCCCCEEEEEceecCCCc
Q 045424 75 LGLKDGDEIDAMYHAFGGGH 94 (98)
Q Consensus 75 l~medgD~Idv~~~q~GG~~ 94 (98)
-+++.||.|.+.+++.+|++
T Consensus 60 ~~lk~Gd~V~F~~~~~~~~~ 79 (88)
T 2vb2_X 60 SEIKTGDKVAFNFVQQGNLS 79 (88)
T ss_dssp CCCCTTCEEEEEEEEETTEE
T ss_pred hcCCCCCEEEEEEEEeCCEE
Confidence 35899999999999988753
No 349
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=30.76 E-value=97 Score=19.13 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=44.9
Q ss_pred EEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEEEC----CeecCCCCChhhcCCCCCCEEEEE
Q 045424 19 LIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLIN----GNRFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 19 I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fd----G~~l~~~~Tp~~l~medgD~Idv~ 86 (98)
|++.-++++...+.|++..++..-..+-.++.|+.++.+..+-. +.+|.=+.-...|. |++|.|-
T Consensus 16 irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~I~WdtDi~~L~---geEL~Ve 84 (96)
T 3ny5_A 16 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLT---GEELHVE 84 (96)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEECC---CEEECTTBBGGGGT---TCEEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEccCCCcCcccccccchhcc---cceEEeh
Confidence 44444888888999999999999888889999998876665533 23444444444333 6666553
No 350
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=30.47 E-value=44 Score=21.20 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=22.8
Q ss_pred cCCCEEEEEEcCccHHHHHHHHHHHhcCC
Q 045424 24 QDGDKRFFQFNHDVEIKRLLIKYCETKSQ 52 (98)
Q Consensus 24 ~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~ 52 (98)
..|..+++.++ +.+++.++...++..|+
T Consensus 29 ~~G~~isLnf~-da~i~~vl~~la~~tg~ 56 (128)
T 4ar0_A 29 FTGRKISLDFQ-DVEIRTILQILAKESGM 56 (128)
T ss_dssp CSSCEEEEEEE-EEEHHHHHHHHHHTTCC
T ss_pred CCCCceEEEEe-CCCHHHHHHHHHHHHCC
Confidence 46778888776 68999999999998875
No 351
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.16 E-value=38 Score=18.91 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.9
Q ss_pred hhhcCCCCCCEEEEEce
Q 045424 72 ADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 72 p~~l~medgD~Idv~~~ 88 (98)
+.+|.+.-||+|.|.-+
T Consensus 28 ~~eLsf~~Gd~i~v~~~ 44 (75)
T 2ege_A 28 KGRLALRAGDVVMVYGP 44 (75)
T ss_dssp CCBCCBCTTCEEEEESC
T ss_pred CCcceECCCCEEEEeEc
Confidence 67899999999999864
No 352
>2gmq_A Hypothetical protein EF0006; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG, unknown function; HET: MSE; 1.76A {Enterococcus faecalis} SCOP: b.122.1.11
Probab=30.16 E-value=43 Score=21.07 Aligned_cols=56 Identities=9% Similarity=0.135 Sum_probs=40.5
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCC-CCcceeEEECCeecCCC
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQ-PFKSTPFLINGNRFDYS 69 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~-~~~~~rF~fdG~~l~~~ 69 (98)
...+++.++...|+-+.+++|.+-.|+-+.+.----.++ ....+.++=+|..|.-.
T Consensus 20 EK~~~~~W~G~~GrL~~ir~K~~r~~Em~~N~QiT~ENI~EI~~i~iiKNGKsL~L~ 76 (118)
T 2gmq_A 20 EKDLTLQWRGNTGKLVKVRLKNTRAMEMWYNKQITEENIQEITTLNIIKNGKSLALE 76 (118)
T ss_dssp GGGEEEEEGGGTSBEEEEEECHHHHHHHHHHTSSCTTTGGGCCEEEEEETTEEEEEE
T ss_pred hhhhheeeecccceEEEEEeeCCceeeehhhCCCChhhceeeeeeeeecCCcEEEEE
Confidence 356888898889999999999988887776543333344 23677788899877643
No 353
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=30.06 E-value=61 Score=20.39 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=19.7
Q ss_pred CCCCCCCCcEEEEEEccCCCEEEEEE
Q 045424 8 KNNKKPQHLINLIIKSQDGDKRFFQF 33 (98)
Q Consensus 8 ~~~~~~~~~I~I~v~~~~g~~~~f~I 33 (98)
+.+.++++.+.|.+.-.++..+.+.+
T Consensus 90 ~~~l~~G~~v~ltL~Fe~~~~v~v~~ 115 (120)
T 2k6w_A 90 KRPLKAGEEVELDLLFAGGKVLKVVL 115 (120)
T ss_dssp SSCBCTTCEEEEEEEETTTEEEEEEE
T ss_pred CCCCCCCCEEEEEEEECCCCeEEEEE
Confidence 56777899999999888877665443
No 354
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=30.00 E-value=74 Score=17.86 Aligned_cols=54 Identities=7% Similarity=-0.061 Sum_probs=34.7
Q ss_pred EEEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCC--CChhhcCCCCCCEEEEEceec
Q 045424 29 RFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYS--KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 29 ~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~--~Tp~~l~medgD~Idv~~~q~ 90 (98)
+.-.|.+..| |++.|+.....-+.+||..+... .....+=-..|+.|.+.+...
T Consensus 31 ~V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 86 (90)
T 2he4_A 31 YIRSVDPGSP--------AARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGP 86 (90)
T ss_dssp EEEEECTTSH--------HHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECC
T ss_pred EEEEECCCCh--------HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcc
Confidence 3445555555 56778888899999999999775 222222222378887776543
No 355
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=29.97 E-value=65 Score=17.99 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=28.6
Q ss_pred HHhcCCCCcceeEEECCeecCCCC--ChhhcCCCCCCEEEEEcee
Q 045424 47 CETKSQPFKSTPFLINGNRFDYSK--TADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 47 ~~~~g~~~~~~rF~fdG~~l~~~~--Tp~~l~medgD~Idv~~~q 89 (98)
+++.|+.....-+.+||..+.... ....+--..|+.|.+.+..
T Consensus 40 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R 84 (88)
T 2uzc_A 40 AAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQR 84 (88)
T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEe
Confidence 556788888899999999997652 2222212247888777754
No 356
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=29.89 E-value=53 Score=18.60 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=27.3
Q ss_pred HHhcCCCCcceeEEECCeecCCCCChhhcC--C-CCCCEEEEEceecC
Q 045424 47 CETKSQPFKSTPFLINGNRFDYSKTADQLG--L-KDGDEIDAMYHAFG 91 (98)
Q Consensus 47 ~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~--m-edgD~Idv~~~q~G 91 (98)
|++.|+.....-+.+||..+... +.+++. | ..|+.|.+.+...|
T Consensus 40 A~~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~g~~v~l~v~r~~ 86 (91)
T 2vsp_A 40 ADLAGLEDEDVIIEVNGVNVLDE-PYEKVVDRIQSSGKNVTLLVCGKK 86 (91)
T ss_dssp HHHTTCCTTCEEEEETTEECTTS-CHHHHHHHHTTSCSEEEEEEEC--
T ss_pred HHHcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCCEEEEEEEeCC
Confidence 66778888888888899888632 233321 1 12778877776443
No 357
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=29.88 E-value=51 Score=18.19 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=16.3
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 16 ~~~~ELsf~~Gd~i~vl~~ 34 (67)
T 2b86_A 16 QQDQELDIKKNERLWLLDD 34 (67)
T ss_dssp SSTTSCCBCTTCEEEEEEC
T ss_pred CCCCccccCCCCEEEEEec
Confidence 4578999999999999866
No 358
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.88 E-value=41 Score=18.97 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=16.9
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~~ 48 (81)
T 1x43_A 29 ANSTELSLLADEVITVFSVV 48 (81)
T ss_dssp SSTTBCCCCTTCEEEEECCT
T ss_pred CCCCcCCCCCCCEEEEEEcC
Confidence 46679999999999998764
No 359
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=29.78 E-value=36 Score=21.15 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=15.5
Q ss_pred hhhcCCCCCCEEEEEceec
Q 045424 72 ADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 72 p~~l~medgD~Idv~~~q~ 90 (98)
-+.++.+.||+|+|.++.+
T Consensus 86 Rka~g~~~GD~V~V~L~~~ 104 (104)
T 2d9r_A 86 RRAIGKQPGDSVYVTLLPL 104 (104)
T ss_dssp HHHHTCCTTSEEEEEEEEC
T ss_pred HHHcCCCCCCEEEEEEEEC
Confidence 3568899999999998753
No 360
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=29.72 E-value=85 Score=20.15 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=27.6
Q ss_pred CCCEEEEEEcCccHHHHHHHHHHHhcCCCCc
Q 045424 25 DGDKRFFQFNHDVEIKRLLIKYCETKSQPFK 55 (98)
Q Consensus 25 ~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~ 55 (98)
.|+.+.+++.+...+..-...||++.|+...
T Consensus 11 ~g~~~~~rL~~Gedl~~~l~~~~~~~~i~~a 41 (147)
T 3hwu_A 11 TPTGYLMVLRHGDNVLQNLEQLARDEHIPSA 41 (147)
T ss_dssp ETTEEEEEEETTCBHHHHHHHHHHHTTCSEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHcCCCEE
Confidence 3778899999999999999999999999754
No 361
>1k3e_A CEST; chaperone, secretion, type III, intimin receptor; 2.80A {Escherichia coli} SCOP: d.198.1.1
Probab=29.35 E-value=65 Score=21.52 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHHhcCCC------CcceeEEECCe
Q 045424 36 DVEIKRLLIKYCETKSQP------FKSTPFLINGN 64 (98)
Q Consensus 36 ~t~l~kL~~~y~~~~g~~------~~~~rF~fdG~ 64 (98)
+..+..|++.|+++.|++ .+.+.|.+|++
T Consensus 2 ~~~~e~LL~efg~~lGLp~L~fDeng~C~L~IDd~ 36 (156)
T 1k3e_A 2 SSRSELLLEKFAEKIGIGSISFNENRLCSFAIDEI 36 (156)
T ss_dssp CCHHHHHHHHHHHHHSCCCCCCCTTSCCEEEECCC
T ss_pred chHHHHHHHHHHHHcCCCCcccCCCCcEEEEECCe
Confidence 467899999999999997 26788888885
No 362
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.30 E-value=99 Score=18.79 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=39.5
Q ss_pred EEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCCcceeEE--ECCeecCCCCChhhcCCCCCCEEEEEc
Q 045424 19 LIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFL--INGNRFDYSKTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 19 I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~--fdG~~l~~~~Tp~~l~medgD~Idv~~ 87 (98)
.+|.+.+ +.+.+-|-. ..|+.|+.+-|++++++...+++. -||..|..++=-..|. .+++-+.+
T Consensus 12 fkV~~~~-Rs~k~GV~A-~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp---~nT~lmvL 77 (91)
T 2eel_A 12 FRVSNHD-RSSRRGVMA-SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG---DNTHFMIL 77 (91)
T ss_dssp EEEECTT-SCCCEEEEE-SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC---SSEEEEEE
T ss_pred EEEecCC-CCeEEeEEc-CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC---CCCEEEEE
Confidence 4554433 334555543 689999999999999965444444 4899887554433333 45555544
No 363
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=29.25 E-value=49 Score=18.29 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.8
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~ 41 (74)
T 1j3t_A 22 KKDNHLNFSKHDIITVLEQQ 41 (74)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred CCCCccCCCCCCEEEEEecC
Confidence 46778999999999998764
No 364
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.17 E-value=48 Score=18.67 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.0
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~~~~ 44 (81)
T 2ysq_A 22 MANRELAFKAGDVIKVLDASNKD 44 (81)
T ss_dssp SSSSSCCCCTTCEEEEEECCSSS
T ss_pred CCCCcCCCCCCCEEEEEEEcCcC
Confidence 46778999999999998664433
No 365
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=29.13 E-value=1.2e+02 Score=19.63 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=39.6
Q ss_pred EEEEcC----ccHHHHHHHHHHHhcCCCC-------cceeEEECCe-ecCCCCChhhcCCCCCCEEEEE
Q 045424 30 FFQFNH----DVEIKRLLIKYCETKSQPF-------KSTPFLINGN-RFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 30 ~f~Ik~----~t~l~kL~~~y~~~~g~~~-------~~~rF~fdG~-~l~~~~Tp~~l~medgD~Idv~ 86 (98)
.++|.. ..+|..|.+...+++|.+. +..|++||=. -=.-..|.++||+..|.+|-|.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 455643 3588999888777777642 2466777632 2334779999999999988775
No 366
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=29.08 E-value=59 Score=17.98 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=26.1
Q ss_pred HHhcCCCCcceeEEECCeecCCC--CChhhcCCCCCCEEEEEce
Q 045424 47 CETKSQPFKSTPFLINGNRFDYS--KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 47 ~~~~g~~~~~~rF~fdG~~l~~~--~Tp~~l~medgD~Idv~~~ 88 (98)
|++.|+.....-+.+||..+... .....+--..++.|.+.+.
T Consensus 38 A~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 81 (85)
T 1rgw_A 38 AAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQ 81 (85)
T ss_dssp HHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEE
Confidence 44568888888888999988765 1222211234566666664
No 367
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.03 E-value=34 Score=18.61 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=16.9
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (71)
T 2cre_A 19 DCSDELAFSRGDILTILEQH 38 (71)
T ss_dssp SSSSBCCCCSSCCEEEEESC
T ss_pred CCCCCCCCCCCCEEEEeEcC
Confidence 46779999999999998764
No 368
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.72 E-value=27 Score=20.43 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=17.6
Q ss_pred CCChhhcCCCCCCEEEEEcee
Q 045424 69 SKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q 89 (98)
...+.+|.++-||+|.|.-+.
T Consensus 27 ~~~~~eLs~~~Gd~i~v~~~~ 47 (94)
T 2e5k_A 27 PQNDDELELVPGDFIFMSPME 47 (94)
T ss_dssp CSSSSBCCBCTTCEEEECGGG
T ss_pred CCCCCCcCCCCCCEEEEEECc
Confidence 356789999999999998764
No 369
>3ktz_A Ribosome-inactivating protein gelonin; plant seeds, glycosidase, disulfide bond, glycoprotein, hydrolase, plant defense; HET: NAG; 1.60A {Gelonium multiflorum} SCOP: d.165.1.0 PDB: 3ku0_A*
Probab=28.59 E-value=1e+02 Score=21.90 Aligned_cols=27 Identities=4% Similarity=0.130 Sum_probs=20.4
Q ss_pred CCCCCcEEEEEEccCCCEEEEEEcCcc
Q 045424 11 KKPQHLINLIIKSQDGDKRFFQFNHDV 37 (98)
Q Consensus 11 ~~~~~~I~I~v~~~~g~~~~f~Ik~~t 37 (98)
..|+..+.|.+...++..+++.|..+.
T Consensus 46 ~~~~r~~lV~L~~~~~~~itLai~~~N 72 (251)
T 3ktz_A 46 DPGKCFVLVALSNDNGQLAEIAIDVTS 72 (251)
T ss_dssp CTTTSEEEEEEECTTCCEEEEEEETTT
T ss_pred CCCCcEEEEEEEeCCCCEEEEEEecCC
Confidence 446788888888777778888888753
No 370
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.58 E-value=14 Score=20.54 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=17.8
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+...|
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~~~~~ 42 (71)
T 2gqi_A 20 PDTDEISFLKGDMFIVHNELEDG 42 (71)
T ss_dssp TTSSCCCCCTTCBCCCCEECSSS
T ss_pred CCCCCCCCCCCCEEEEEEecCCC
Confidence 45789999999999987654443
No 371
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=28.41 E-value=45 Score=18.22 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=25.9
Q ss_pred CCCEEEEEEcCccHHHHHHHHHHHhcCCCCcc
Q 045424 25 DGDKRFFQFNHDVEIKRLLIKYCETKSQPFKS 56 (98)
Q Consensus 25 ~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~~~ 56 (98)
+.....|.|+-+..+-.-+..||...|.+.+.
T Consensus 10 ~k~kg~~~vrId~eLH~rlk~~Aa~~g~Sln~ 41 (56)
T 2kel_A 10 KKQKAVFGIYMDKDLKTRLKVYCAKNNLQLTQ 41 (56)
T ss_dssp -CCEEEEEEEEEHHHHHHHHHHHHHSCCCHHH
T ss_pred ccCeeeEEEEeCHHHHHHHHHHHHHcCCCHHH
Confidence 45567888888889999999999999987654
No 372
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Probab=28.09 E-value=43 Score=20.68 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=16.1
Q ss_pred CChhhcCCCCCCEEEEEc
Q 045424 70 KTADQLGLKDGDEIDAMY 87 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~ 87 (98)
..+.+|.++-||+|.|.-
T Consensus 56 ~~~dELsf~~GDiI~Vl~ 73 (115)
T 1bb9_A 56 TDTDELQLKAGDVVLVIP 73 (115)
T ss_dssp SSTTBCCBCTTCEEEEEC
T ss_pred CCCCccCcCCCCEEEEee
Confidence 567889999999999987
No 373
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=28.07 E-value=48 Score=18.77 Aligned_cols=20 Identities=15% Similarity=0.386 Sum_probs=16.6
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 37 ~~~~eLs~~~Gd~i~v~~~~ 56 (86)
T 2oi3_A 37 IHHEDLSFQKGDQMVVLEES 56 (86)
T ss_dssp SSSSCCCCCTTCEEEEEEES
T ss_pred CCCCcCcCCCCCEEEEEEcC
Confidence 45678999999999998765
No 374
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=27.79 E-value=31 Score=20.68 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=13.7
Q ss_pred CCeecCCCCChhhcCCCCCCEEEE
Q 045424 62 NGNRFDYSKTADQLGLKDGDEIDA 85 (98)
Q Consensus 62 dG~~l~~~~Tp~~l~medgD~Idv 85 (98)
||++|.. ...|.+||+|.+
T Consensus 74 ng~~i~~-----~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 74 EGRKIEH-----QSTLSANQVVAL 92 (106)
T ss_dssp TTEECSS-----EEECCTTCCEEE
T ss_pred CCEECCC-----CeECCCCCEEEE
Confidence 6666654 347899999865
No 375
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=27.75 E-value=2.4e+02 Score=22.66 Aligned_cols=45 Identities=4% Similarity=-0.013 Sum_probs=38.5
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC
Q 045424 10 NKKPQHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF 54 (98)
Q Consensus 10 ~~~~~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~ 54 (98)
...+++.+.++|-..|-...++++..+++...++..-+++.|...
T Consensus 346 ~~~~~d~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (694)
T 3cf6_E 346 PIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGE 390 (694)
T ss_dssp CCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCS
T ss_pred CCCCCCceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCcc
Confidence 344677888999888888999999999999999999999998743
No 376
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=27.66 E-value=49 Score=20.26 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=29.3
Q ss_pred EEE-cCccHHHHHHHHHHHhcCCCC-cceeEEE-CC--eecCCCCChhhcCCCCCCEEEEEce
Q 045424 31 FQF-NHDVEIKRLLIKYCETKSQPF-KSTPFLI-NG--NRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 31 f~I-k~~t~l~kL~~~y~~~~g~~~-~~~rF~f-dG--~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
|-+ ++..+... ||.+..-+. +.+++-. =| -+.++..-+.+..|+|||+|.++.+
T Consensus 29 viL~~~GsTv~D----fa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 29 VVLPYSRTTVED----FCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp EEEETTSCCHHH----HHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred EEEecCCCCHHH----HHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 445 56666555 444443333 3444422 11 1223333456677899999998865
No 377
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=27.64 E-value=39 Score=16.78 Aligned_cols=26 Identities=8% Similarity=-0.058 Sum_probs=20.6
Q ss_pred EEEEcCccHHHHHHHHHHHhcCCCCc
Q 045424 30 FFQFNHDVEIKRLLIKYCETKSQPFK 55 (98)
Q Consensus 30 ~f~Ik~~t~l~kL~~~y~~~~g~~~~ 55 (98)
.+.|.-+..+..-++.+|+..|.+.+
T Consensus 4 ritv~l~~~l~~~Ld~~a~~~g~srS 29 (45)
T 2cpg_A 4 RLTITLSESVLENLEKMAREMGLSKS 29 (45)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTCCHH
T ss_pred eEEEecCHHHHHHHHHHHHHHCcCHH
Confidence 45666678889999999999998653
No 378
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=27.55 E-value=28 Score=19.44 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=17.8
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~~~~ 44 (76)
T 1ujy_A 22 TNEDELSVCKGDIIYVTRVEEGG 44 (76)
T ss_dssp SSTTSCCBCSSCCEEESSCCSSS
T ss_pred CCCCcccCCCCCEEEEEEecCCC
Confidence 46779999999999987654443
No 379
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=27.51 E-value=37 Score=18.07 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=22.5
Q ss_pred ceeEEECCeecCCCCC---hhhcCCCCCCEEEEEcee
Q 045424 56 STPFLINGNRFDYSKT---ADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 56 ~~rF~fdG~~l~~~~T---p~~l~medgD~Idv~~~q 89 (98)
.+.+...|..|...-| .++|+++.|+.+.+.++.
T Consensus 24 ~v~l~~~~~~l~a~it~~s~~~l~L~~G~~V~~~ika 60 (67)
T 1fr3_A 24 KIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKA 60 (67)
T ss_dssp EEEEEETTEEEEEEEEHHHHHHHTCCTTCEEEEEECG
T ss_pred EEEEEeCCCEEEEEeCHHHHHhCCCCCCCEEEEEEec
Confidence 3555555555554444 456899999999888764
No 380
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...
Probab=27.48 E-value=48 Score=19.01 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=18.4
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 18 ~~~~eLsf~~Gd~i~vl~~~~~~ 40 (84)
T 4ag1_C 18 TRWTDLSFHKGEKFQILEFGPGD 40 (84)
T ss_dssp SBTTBCCBCTTCEEEEEECCSSS
T ss_pred CCCCcccccCCCEEEEEEecCCC
Confidence 45789999999999998765444
No 381
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=27.20 E-value=38 Score=19.55 Aligned_cols=46 Identities=20% Similarity=0.089 Sum_probs=31.3
Q ss_pred HHhcCCCCcceeEEECCeecCCC--CChhhcCCCCCCEEEEEceecCC
Q 045424 47 CETKSQPFKSTPFLINGNRFDYS--KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 47 ~~~~g~~~~~~rF~fdG~~l~~~--~Tp~~l~medgD~Idv~~~q~GG 92 (98)
|++.|+....+-+.+||..+... .....+--..|+.+.+.+...|.
T Consensus 47 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~ 94 (99)
T 3khf_A 47 AQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALEN 94 (99)
T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEECSCS
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEECCC
Confidence 56778989999999999999732 22222212578888888765443
No 382
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=27.04 E-value=39 Score=18.48 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.8
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~ 38 (69)
T 1uhf_A 20 VEPGDLTFTEGEEILVTQK 38 (69)
T ss_dssp SSSSBCCBCTTCEEEECEE
T ss_pred CCcCccCCCCCCEEEEEEe
Confidence 4578999999999998654
No 383
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=27.00 E-value=1e+02 Score=18.10 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHH
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLI 44 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~ 44 (98)
+.++|++.+.+|....|.+...++|.....
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 346788876788888999999887766543
No 384
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.94 E-value=38 Score=19.34 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.1
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~ 38 (85)
T 2dlp_A 20 DNCSLLSFHRGDLIKLLPV 38 (85)
T ss_dssp SSSSBCCBCTTCEEEECCC
T ss_pred cCcCCccCcCCCEEEEEEc
Confidence 4667999999999999764
No 385
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=26.78 E-value=39 Score=18.41 Aligned_cols=19 Identities=16% Similarity=0.496 Sum_probs=16.3
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.++-||+|.|.-+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 18 VTEEELNFEKGETMEVIEK 36 (71)
T ss_dssp CSSSBCCCCSSCCEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4567899999999999876
No 386
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=26.65 E-value=43 Score=19.75 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=13.1
Q ss_pred CCeecCCCCChhhcCCCCCCEEEE
Q 045424 62 NGNRFDYSKTADQLGLKDGDEIDA 85 (98)
Q Consensus 62 dG~~l~~~~Tp~~l~medgD~Idv 85 (98)
+|+++. ...|.+||+|.+
T Consensus 70 ng~~i~------~~~L~~gd~i~i 87 (100)
T 3po8_A 70 NNAPVQ------EWQLADGDVIRL 87 (100)
T ss_dssp TTEECS------EEECCTTCEEEE
T ss_pred CCEECc------eEECCCCCEEEE
Confidence 666664 367899999965
No 387
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}
Probab=26.33 E-value=48 Score=19.05 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=16.0
Q ss_pred CChhhcCCCCCCEEEEEce
Q 045424 70 KTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~ 88 (98)
..+.+|.+.-||+|.|.-+
T Consensus 43 ~~~~eLs~~~Gd~i~v~~~ 61 (86)
T 2jxb_A 43 QQDQELDIKKNERLWLLDD 61 (86)
T ss_dssp CSSSBCCCCTTEEEEEEEC
T ss_pred CCCCEeccCCCCEEEEEec
Confidence 4567899999999999865
No 388
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=26.31 E-value=50 Score=19.47 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=31.3
Q ss_pred HHhcCCCCcceeEEECCeecCCCCChhhcC--CCCCCEEEEEceecC
Q 045424 47 CETKSQPFKSTPFLINGNRFDYSKTADQLG--LKDGDEIDAMYHAFG 91 (98)
Q Consensus 47 ~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~--medgD~Idv~~~q~G 91 (98)
|++.|+....+-+.+||..+......+-+. ...|+.|.+.+..-|
T Consensus 59 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g 105 (110)
T 1x5q_A 59 AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRES 105 (110)
T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEECS
T ss_pred HHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEECC
Confidence 567788888999999999998643322211 237888888876544
No 389
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.15 E-value=54 Score=18.23 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=16.3
Q ss_pred hhhcCCCCCCEEEEEceec
Q 045424 72 ADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 72 p~~l~medgD~Idv~~~q~ 90 (98)
+.+|.+.-||+|.|.-+.-
T Consensus 28 ~~eLsf~~Gd~i~v~~~~~ 46 (76)
T 2csi_A 28 EAELTFCTGDIITVFGEID 46 (76)
T ss_dssp TTSCCCCTTCEEEEESSCC
T ss_pred CCcccCCCCCEEEEeEecC
Confidence 7899999999999987644
No 390
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.99 E-value=35 Score=19.95 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.5
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.++-||+|.|.-+.
T Consensus 17 ~~~~eLsf~~Gd~i~v~~~~ 36 (93)
T 1uff_A 17 RNHDEMSFNSGDIIQVDEKT 36 (93)
T ss_dssp CSSSCCCBCTTCEEEECSSC
T ss_pred CCCCCcCCCCCCEEEEeEcc
Confidence 45678999999999997664
No 391
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=25.90 E-value=33 Score=22.09 Aligned_cols=20 Identities=45% Similarity=0.539 Sum_probs=14.0
Q ss_pred CCeecCCCCChhhcCCCCCCEEEE
Q 045424 62 NGNRFDYSKTADQLGLKDGDEIDA 85 (98)
Q Consensus 62 dG~~l~~~~Tp~~l~medgD~Idv 85 (98)
||++|... ...|.+||+|.+
T Consensus 92 Ng~~i~~~----~~~L~~GD~I~l 111 (151)
T 2jqj_A 92 NGNRLVKK----DYILKNGDRIVF 111 (151)
T ss_dssp TTEECCSS----CEEECSSEEEEE
T ss_pred CCEEcCCC----ceECCCCCEEEE
Confidence 66666543 466889999866
No 392
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form, structural proteomics in europe, spine, structur genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1 PDB: 2jqa_A
Probab=25.89 E-value=70 Score=20.94 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=20.0
Q ss_pred CCCCCCCCcEEEEEEccCCCEE--EEEEc
Q 045424 8 KNNKKPQHLINLIIKSQDGDKR--FFQFN 34 (98)
Q Consensus 8 ~~~~~~~~~I~I~v~~~~g~~~--~f~Ik 34 (98)
+.+.++++.+.|.+.-.++..+ .+.|+
T Consensus 115 ~~~l~~G~~v~lTL~Fe~~g~v~v~~~V~ 143 (149)
T 1x9l_A 115 KRPLKVGETVNITLKATDGRTLNVAATVK 143 (149)
T ss_dssp CSCCCTTEEEEEEECBTTTCCEEEEEEEC
T ss_pred CCCCCCCCEEEEEEEECCCCeEEEEEEEe
Confidence 5677889999999988777665 44444
No 393
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=25.79 E-value=55 Score=18.13 Aligned_cols=20 Identities=5% Similarity=-0.140 Sum_probs=10.6
Q ss_pred hcCCCCcceeEEECCeecCC
Q 045424 49 TKSQPFKSTPFLINGNRFDY 68 (98)
Q Consensus 49 ~~g~~~~~~rF~fdG~~l~~ 68 (98)
+.|+.....-+..||..+..
T Consensus 38 ~aGl~~GD~I~~ing~~v~~ 57 (83)
T 2kv8_A 38 FVGLRAGDQILAVNEINVKK 57 (83)
T ss_dssp TTTCCTTCEEEEETTEECSS
T ss_pred HcCCCCCCEEEEECCEECCC
Confidence 34555555555555555544
No 394
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=25.67 E-value=54 Score=18.72 Aligned_cols=54 Identities=4% Similarity=0.035 Sum_probs=36.4
Q ss_pred EEEEcCccHHHHHHHHHHHhcCCCCcceeEEECCeecCCCCChhhcC---CCCCCEEEEEceecCC
Q 045424 30 FFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTADQLG---LKDGDEIDAMYHAFGG 92 (98)
Q Consensus 30 ~f~Ik~~t~l~kL~~~y~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~---medgD~Idv~~~q~GG 92 (98)
.-.|.+..| |++.|+....+-+.+||..+... +.+++- -..|+.|.+.+..-|.
T Consensus 34 V~~V~~~sp--------A~~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~g~~v~l~v~r~~~ 90 (96)
T 2v90_A 34 LWEVDPGLP--------AKKAGMQAGDRLVAVAGESVEGL-GHEETVSRIQGQGSCVSLTVVDPEA 90 (96)
T ss_dssp EEEECTTSH--------HHHTTCCTTEEEEEETTEECTTC-CHHHHHHHHHTTTTEEEEEEECCCT
T ss_pred EEEECCCCh--------HHHcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCCEEEEEEECCCC
Confidence 345556555 67788999999999999999862 222221 1238888888876554
No 395
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.56 E-value=46 Score=18.99 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=17.9
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 31 ~~~~eLs~~~Gd~i~v~~~~~~~ 53 (85)
T 2yuq_A 31 NDPQELALRRNEEYCLLDSSEIH 53 (85)
T ss_dssp SCSSBCCCCBTEEEEEEECCSSS
T ss_pred CCCCcCCCCCCCEEEEEEecCCC
Confidence 46678999999999998665433
No 396
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=25.53 E-value=70 Score=20.07 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=30.5
Q ss_pred HHhcCCCCcceeEEECCeecCCCCChhh----cCCCCCCEEEEEceecC
Q 045424 47 CETKSQPFKSTPFLINGNRFDYSKTADQ----LGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 47 ~~~~g~~~~~~rF~fdG~~l~~~~Tp~~----l~medgD~Idv~~~q~G 91 (98)
|++.|+....+-+.+||..+... |.++ +.-..|+.|.+.+..-|
T Consensus 77 A~~aGL~~GD~I~~vng~~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~g 124 (139)
T 2vz5_A 77 AEIAGLQIGDKIMQVNGWDMTMV-THDQARKRLTKRSEEVVRLLVTRQS 124 (139)
T ss_dssp HHHHTCCTTCEEEEETTEECTTC-CHHHHHHHHCCTTCSEEEEEEEECC
T ss_pred HHHCCCCCCCEEEEECCEEcCCC-CHHHHHHHHHhCCCCEEEEEEEECC
Confidence 56778888889999999988742 2333 33356888888776544
No 397
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=25.39 E-value=1.9e+02 Score=20.81 Aligned_cols=39 Identities=5% Similarity=0.149 Sum_probs=33.8
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCC
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQP 53 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~ 53 (98)
.++.|+|-..+|....+.|.++++-..|.+..+.+.++.
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~ 68 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCG 68 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCC
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCC
Confidence 556788888899999999999999999999988887663
No 398
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.37 E-value=55 Score=19.17 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=17.8
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.++-||+|.|.-+.-+|
T Consensus 46 ~~~~eLs~~~Gd~i~v~~~~~~~ 68 (98)
T 1udl_A 46 NNEDELSFSKGQLINVMNKDDPD 68 (98)
T ss_dssp SSTTSCCCCTTCEEEECBCCSSS
T ss_pred CCCCccCCcCCCEEEEEEecCCC
Confidence 35679999999999997664433
No 399
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=25.29 E-value=52 Score=18.49 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=15.6
Q ss_pred ecCCCCChhhcCCCCCCEEEEE
Q 045424 65 RFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 65 ~l~~~~Tp~~l~medgD~Idv~ 86 (98)
.+.++.-++..+|..||+|-.+
T Consensus 34 ~V~~~spA~~aGl~~GD~I~~i 55 (90)
T 2eaq_A 34 SVEAGSPAEFSQLQVDDEIIAI 55 (90)
T ss_dssp EECTTSHHHHTTCCTTCEEEEE
T ss_pred EECCCChHHHcCCCCCCEEEEE
Confidence 3455555667789999988654
No 400
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}
Probab=25.10 E-value=33 Score=20.33 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=18.0
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 30 ~~~~eLsf~~Gd~i~V~~~~~~g 52 (92)
T 2o2o_A 30 QNDDELELKVGDIIEVVGEVEEG 52 (92)
T ss_dssp CSSSCCCBCSSCEEECCCGGGSS
T ss_pred CCCccccccCCCEEEEeEecCCC
Confidence 46779999999999998654444
No 401
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=25.06 E-value=1e+02 Score=18.38 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=21.1
Q ss_pred EEEEEccCCCEEEEEEcCccHHHHHH
Q 045424 18 NLIIKSQDGDKRFFQFNHDVEIKRLL 43 (98)
Q Consensus 18 ~I~v~~~~g~~~~f~Ik~~t~l~kL~ 43 (98)
+|.+...+|....|.+...++|....
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH
Confidence 46777789999999999998877654
No 402
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=25.06 E-value=64 Score=20.30 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=9.1
Q ss_pred cCCCCCCEEEE
Q 045424 75 LGLKDGDEIDA 85 (98)
Q Consensus 75 l~medgD~Idv 85 (98)
..|.+||+|.+
T Consensus 109 ~~L~~GD~I~~ 119 (130)
T 4h87_A 109 CRVHVGHVVRF 119 (130)
T ss_dssp EECCTTCEEEE
T ss_pred eECCCCCEEEE
Confidence 46899999976
No 403
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}
Probab=25.02 E-value=56 Score=20.87 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=16.7
Q ss_pred CChhhcCCCCCCEEEEEcee
Q 045424 70 KTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q 89 (98)
..+.+|.+.-||+|.|.-+.
T Consensus 17 ~~~~ELsf~~Gd~i~Vl~~~ 36 (142)
T 2kbt_A 17 RDRSELSLKEGDIIKILNKK 36 (142)
T ss_dssp SSSSBCCCCTTCEEEEEECC
T ss_pred CCCCcCCCCCCCEEEEEEec
Confidence 45779999999999998664
No 404
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.89 E-value=50 Score=18.61 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=17.1
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.- ..+|
T Consensus 29 ~~~~eLs~~~Gd~i~v~~-~~~~ 50 (79)
T 2cud_A 29 PDISPPIFRRGEKLRVIS-DEGG 50 (79)
T ss_dssp TTTSCCSSCTTCEEEEEE-EETT
T ss_pred CCCCcCCCCCCCEEEEEe-cCCC
Confidence 457789999999999986 3443
No 405
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=24.64 E-value=46 Score=20.06 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 62 NGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 62 dG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
.|+-.-+.+-=+.|+++.||.+++.+.
T Consensus 59 kGqitIPkeiR~~lgi~~Gd~l~~~~~ 85 (92)
T 2glw_A 59 QGSVIIPKALRDVIGIKPGEVIEVLLL 85 (92)
T ss_dssp GGEEECCHHHHHHHTCCTTCEEEEEEE
T ss_pred CceEECcHHHHHHcCCCCCCEEEEEEe
Confidence 466666677778899999999999875
No 406
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=24.50 E-value=45 Score=18.69 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.2
Q ss_pred CChh-hcCCCCCCEEEEEceec
Q 045424 70 KTAD-QLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~-~l~medgD~Idv~~~q~ 90 (98)
+.+. +|.+.-||+|.|.-+..
T Consensus 19 ~~~~dELsf~~Gd~i~Vl~~~~ 40 (69)
T 1nm7_A 19 ENPEMEVALKKGDLMAILSKKD 40 (69)
T ss_dssp SSTTSCCCCCTTCEEEECCSSS
T ss_pred CCCCCccCCCCCCEEEEEecCC
Confidence 4567 99999999999977654
No 407
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=24.30 E-value=67 Score=18.73 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=13.4
Q ss_pred CCChhhcCCCCCCEEEEE
Q 045424 69 SKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~ 86 (98)
..+|+..+|+.||+|-.+
T Consensus 16 ~~spA~~GL~~GD~I~~I 33 (100)
T 3i18_A 16 DDVPAADVLHAGDLITEI 33 (100)
T ss_dssp TTSGGGGTCCTTCEEEEE
T ss_pred CCCchHHCCCCCCEEEEE
Confidence 345666699999998764
No 408
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=24.21 E-value=58 Score=18.20 Aligned_cols=21 Identities=5% Similarity=0.216 Sum_probs=17.2
Q ss_pred CChhhcCCCCCCEEEEEceec
Q 045424 70 KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+.+|.+.-||+|.|.-+.-
T Consensus 25 ~~~~eLs~~~Gd~i~vl~~~~ 45 (79)
T 1uhc_A 25 RNPNELSVSANQKLKILEFKD 45 (79)
T ss_dssp CSSSBCCBCTTCEEEEEESCC
T ss_pred CCCCccCCCCCCEEEEEECCC
Confidence 467789999999999987653
No 409
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=24.07 E-value=63 Score=18.52 Aligned_cols=20 Identities=20% Similarity=0.508 Sum_probs=16.8
Q ss_pred CCChhhcCCCCCCEEEEEce
Q 045424 69 SKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~ 88 (98)
...+.+|.++-||+|.|.-+
T Consensus 28 ~~~~~eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 28 SVTEEELNFEKGETMEVIEK 47 (91)
T ss_dssp CSSSSBCCCCTTCEEEEEEC
T ss_pred cCCCCcccCCCCCEEEEEEC
Confidence 34577899999999999876
No 410
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=24.07 E-value=76 Score=19.83 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=19.5
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccH
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVE 38 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~ 38 (98)
...-.|+|.......+.|+||.+.|
T Consensus 26 ~~~~~l~l~N~s~~~vaFKVKTT~p 50 (126)
T 1msp_A 26 KHTYHIKITNAGGRRIGWAIKTTNM 50 (126)
T ss_dssp CCCEEEEEEECSSSCEEEEEEESCT
T ss_pred ceEEEEEEECCCCCeEEEEEEcCCC
Confidence 4556788888778889999997665
No 411
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.05 E-value=41 Score=18.59 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.3
Q ss_pred CChhhcCCCCCCEEEEEceec
Q 045424 70 KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+.+|.+.-||+|.|.-+..
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~ 39 (73)
T 2dm1_A 19 RDMRELSLREGDVVRIYSRIG 39 (73)
T ss_dssp CSTTBCCBCTTCEEECCBSSS
T ss_pred CCCCcCCCCCCCEEEEEEecC
Confidence 467899999999999977643
No 412
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=23.91 E-value=41 Score=19.34 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=15.3
Q ss_pred CCCChhhcCCCCCCEEEEEce
Q 045424 68 YSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 68 ~~~Tp~~l~medgD~Idv~~~ 88 (98)
+..-.+.|++..||.+++.++
T Consensus 18 Pk~~~~~lgl~~gd~v~i~~~ 38 (82)
T 1mvf_D 18 PATLMQALNLNIDDEVKIDLV 38 (82)
T ss_dssp CHHHHHHTTCCTTCBEEEEEE
T ss_pred CHHHHHHcCCCCCCEEEEEEE
Confidence 344457789999998888663
No 413
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Probab=23.91 E-value=54 Score=20.10 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=17.6
Q ss_pred CCChhhcCCCCCCEEEEEcee
Q 045424 69 SKTADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q 89 (98)
...+.+|.+.-||+|.|.-+.
T Consensus 33 a~~~~ELsf~~GDiI~Vl~k~ 53 (108)
T 1i1j_A 33 APDCRFLTIHRGQVVYVFSKL 53 (108)
T ss_dssp CSSTTBCCBCTTCEEEEEEEE
T ss_pred CCCCCccccCCCCEEEEEEec
Confidence 346789999999999998774
No 414
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=23.46 E-value=89 Score=16.27 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCCCcceeEEEC
Q 045424 39 IKRLLIKYCETKSQPFKSTPFLIN 62 (98)
Q Consensus 39 l~kL~~~y~~~~g~~~~~~rF~fd 62 (98)
.+.|.+++++..|++.+.+...|.
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V~i~ 44 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRVILY 44 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEEE
Confidence 455778888889999887776664
No 415
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=23.46 E-value=43 Score=18.26 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=13.7
Q ss_pred hhhcCCCCCCEEEEEc
Q 045424 72 ADQLGLKDGDEIDAMY 87 (98)
Q Consensus 72 p~~l~medgD~Idv~~ 87 (98)
+.+|.+.-||+|.|.-
T Consensus 21 ~~eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 21 AYEISFEQNEILQVSD 36 (70)
T ss_dssp TTBCCBCTTCEEEEEC
T ss_pred CCcccCCCCCEEEEEE
Confidence 4599999999999864
No 416
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=23.25 E-value=59 Score=18.17 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=16.3
Q ss_pred ecCCCCChhhcCCCCCCEEEEE
Q 045424 65 RFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 65 ~l~~~~Tp~~l~medgD~Idv~ 86 (98)
.+.++.-++..+|..||+|-.+
T Consensus 32 ~V~~~spA~~aGL~~GD~I~~i 53 (87)
T 2pa1_A 32 KVAERGKAKDADLRPGDIIVAI 53 (87)
T ss_dssp EECSSSHHHHTTCCTTCEEEEE
T ss_pred EECCCChHHHcCCCCCCEEEEE
Confidence 3556666778889999998654
No 417
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=23.22 E-value=59 Score=18.56 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=27.5
Q ss_pred HHhcC-CCCcceeEEECCeecCCCCC--hhhcCCCCCCEEEEEcee
Q 045424 47 CETKS-QPFKSTPFLINGNRFDYSKT--ADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 47 ~~~~g-~~~~~~rF~fdG~~l~~~~T--p~~l~medgD~Idv~~~q 89 (98)
|++.| +....+-+.+||..+..... ...+--..|+.|.+.+..
T Consensus 50 A~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R 95 (98)
T 1ihj_A 50 AHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95 (98)
T ss_dssp HHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEe
Confidence 55668 88888888889988876421 211111257777776654
No 418
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=23.14 E-value=37 Score=25.44 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=12.8
Q ss_pred hhhcCCCCCCEEEEEc
Q 045424 72 ADQLGLKDGDEIDAMY 87 (98)
Q Consensus 72 p~~l~medgD~Idv~~ 87 (98)
-.++-|+|||+|+++.
T Consensus 360 Gkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 360 GLSHILEDEDVVTILK 375 (376)
T ss_dssp CTTCBCCTTCEEEEEE
T ss_pred CCCcEEcCCCEEEEEe
Confidence 3578899999998764
No 419
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=23.01 E-value=73 Score=20.04 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=20.1
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccH
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVE 38 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~ 38 (98)
+...+++|.......+.||||-+.+
T Consensus 24 gg~~~l~L~N~t~~~vAFKVKtT~p 48 (116)
T 1m1s_A 24 GGNSTHNITSESDSRLAFKVKSSNN 48 (116)
T ss_dssp CEEEEEEEEECSSSEEEEEEEESCT
T ss_pred CCEEEEEEECCCCCeEEEEEEecCC
Confidence 4467788888888899999997765
No 420
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.88 E-value=54 Score=18.24 Aligned_cols=18 Identities=11% Similarity=0.444 Sum_probs=15.4
Q ss_pred hhhcCCCCCCEEEEEcee
Q 045424 72 ADQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 72 p~~l~medgD~Idv~~~q 89 (98)
+.+|.++-||+|.|.-+.
T Consensus 23 ~~eLs~~~Gd~i~vl~~~ 40 (75)
T 2egc_A 23 EETAGFQEGVSMEVLERN 40 (75)
T ss_dssp SSSCCBCTTCEEEECEEC
T ss_pred CCcCCCCCCCEEEEEEcC
Confidence 678999999999997654
No 421
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=22.73 E-value=73 Score=18.13 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.2
Q ss_pred cCCCCChhhcCCCCCCEEEEE
Q 045424 66 FDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 66 l~~~~Tp~~l~medgD~Idv~ 86 (98)
+.++.-++..+|+.||+|-.+
T Consensus 37 V~~~spA~~aGL~~GD~I~~i 57 (94)
T 1vb7_A 37 VTERGKAEAADLRPGDIIVAI 57 (94)
T ss_dssp BCTTSSHHHHTCCTTCEEEEE
T ss_pred ECCCCHHHHCCCCCCCEEEEE
Confidence 456667778899999998654
No 422
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}
Probab=22.69 E-value=24 Score=20.40 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=17.7
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+.-+|
T Consensus 30 ~~~~eLsf~~Gd~I~Vl~~~~~g 52 (79)
T 1z9q_A 30 NSKLELNFKAGDVIFLLSRINKD 52 (79)
T ss_dssp SSTTBCCCCTTCCBCCCEESSSS
T ss_pred CCCCcccccCCCEEEEeEecCCC
Confidence 46789999999999987654333
No 423
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=22.60 E-value=35 Score=21.58 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=9.1
Q ss_pred cCCCCCCEEEE
Q 045424 75 LGLKDGDEIDA 85 (98)
Q Consensus 75 l~medgD~Idv 85 (98)
..|.+||+|.+
T Consensus 94 ~~L~~GD~I~i 104 (131)
T 3hx1_A 94 HIIQTGDEIVM 104 (131)
T ss_dssp EECCTTCEEEC
T ss_pred EECCCCCEEEE
Confidence 77999999854
No 424
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=22.57 E-value=64 Score=18.11 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=15.0
Q ss_pred cCCCCChhhcCCCCCCEEEEE
Q 045424 66 FDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 66 l~~~~Tp~~l~medgD~Idv~ 86 (98)
+.++.-++..+|..||+|-.+
T Consensus 34 V~~~spA~~aGl~~GD~I~~i 54 (89)
T 2q3g_A 34 LTPGGKAAQAGVAVGDWVLSI 54 (89)
T ss_dssp ECTTSHHHHTTCCTTCEEEEE
T ss_pred ECCCCHHHHcCCCCCCEEEEE
Confidence 445555667789999988654
No 425
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}
Probab=22.52 E-value=74 Score=18.79 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=17.8
Q ss_pred CChhhcCCCCCCEEEEEceecCC
Q 045424 70 KTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~GG 92 (98)
..+.+|.+.-||+|.|.-+...|
T Consensus 39 ~~~~eLs~~~Gd~i~v~~~~~~~ 61 (109)
T 2yt6_A 39 RTTEDLSFKKGERFQIINNTEGD 61 (109)
T ss_dssp SSTTSCCCCTTCEEEEEECSCTT
T ss_pred CCCCccCCCCCCEEEEEEccCCC
Confidence 35789999999999998664443
No 426
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=22.50 E-value=29 Score=20.71 Aligned_cols=41 Identities=2% Similarity=0.015 Sum_probs=22.5
Q ss_pred HHhcCCCCcceeEEECCeecCCCCChhhcCCCCCCEEEEEce
Q 045424 47 CETKSQPFKSTPFLINGNRFDYSKTADQLGLKDGDEIDAMYH 88 (98)
Q Consensus 47 ~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~medgD~Idv~~~ 88 (98)
+++.|+....+-..+||..+........+ +..|+.|.+.+.
T Consensus 48 A~~aGl~~GD~I~~ing~~v~~~~~~~~~-l~~~~~v~l~v~ 88 (113)
T 2pzd_A 48 AHRAGLRPGDVILAIGEQMVQNAEDVYEA-VRTQSQLAVQIR 88 (113)
T ss_dssp HHHHTCCTTCEEEEETTEECCSHHHHHHH-HHHCSSEEEEEE
T ss_pred HHHcCCCCCCEEEEECCEECCCHHHHHHH-HhCCCeEEEEEE
Confidence 44567777777777788777632211111 223455555553
No 427
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=22.39 E-value=99 Score=16.40 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCCCcceeEEEC
Q 045424 39 IKRLLIKYCETKSQPFKSTPFLIN 62 (98)
Q Consensus 39 l~kL~~~y~~~~g~~~~~~rF~fd 62 (98)
.+.|-+++++..|++.+.+...+.
T Consensus 19 ~~~it~~~~~~lg~~~~~v~V~i~ 42 (62)
T 3m20_A 19 VERLTSVAAEIYGMDRSAITILIH 42 (62)
T ss_dssp HHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred HHHHHHHHHHHhCcCcceEEEEEE
Confidence 445667788889998877665553
No 428
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=22.38 E-value=53 Score=19.14 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=13.7
Q ss_pred cCCCCChhhcCCCCCCEEEEE
Q 045424 66 FDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 66 l~~~~Tp~~l~medgD~Idv~ 86 (98)
+.++..++..||+.||+|-.+
T Consensus 9 V~~~spA~~aGl~~GD~I~~i 29 (95)
T 3id1_A 9 IAANSIAAEAQIAPGTELKAV 29 (95)
T ss_dssp ECTTSHHHHTTCCTTCEEEEE
T ss_pred eCCCCHHHHcCCCCCCEEEEE
Confidence 344445556788888887554
No 429
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}
Probab=22.33 E-value=75 Score=19.57 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.2
Q ss_pred CCChhhcCCCCCCEEEEEceecC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFG 91 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~G 91 (98)
...+.+|.+.-||+|.|.-+.-.
T Consensus 14 a~~~~ELsf~~Gd~i~vl~~~~~ 36 (120)
T 2kym_A 14 AERDDELDVSPGENLSICAHYDY 36 (120)
T ss_dssp CCSTTCCCBCTTCEEEEEEEETT
T ss_pred CCCCCccCCCCCCEEEEEEecCC
Confidence 35678999999999999876433
No 430
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.26 E-value=83 Score=18.12 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=15.1
Q ss_pred cCCCCChhhcCCCCCCEEEEE
Q 045424 66 FDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 66 l~~~~Tp~~l~medgD~Idv~ 86 (98)
+.++.-++..+|..||+|-.+
T Consensus 37 V~~~spA~~aGl~~GD~I~~i 57 (102)
T 2d90_A 37 IEPGSPAEAAGLKNNDLVVAV 57 (102)
T ss_dssp CCTTSTTTTTTCCTTCEEEEE
T ss_pred ECCCCHHHHcCCCCCCEEEEE
Confidence 455666677789999988654
No 431
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=22.18 E-value=81 Score=24.77 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=19.6
Q ss_pred CCChhhcCCCCCCEEEEEceecCC
Q 045424 69 SKTADQLGLKDGDEIDAMYHAFGG 92 (98)
Q Consensus 69 ~~Tp~~l~medgD~Idv~~~q~GG 92 (98)
.+.+.+|.++.||+|.|.-+.-+|
T Consensus 453 a~~~dELs~~~GD~i~v~~~~~~g 476 (526)
T 2de0_X 453 PRTADEIPMEPGDIIGVAGNHWDG 476 (526)
T ss_dssp CSSTTBCCBCTTCEEEEEEECSSS
T ss_pred CCCCCcCCcCCCCEEEEccccCCC
Confidence 457899999999999998665555
No 432
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=22.17 E-value=47 Score=17.84 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=23.2
Q ss_pred ceeEEEC-CeecCCCCCh---hhcCCCCCCEEEEEcee
Q 045424 56 STPFLIN-GNRFDYSKTA---DQLGLKDGDEIDAMYHA 89 (98)
Q Consensus 56 ~~rF~fd-G~~l~~~~Tp---~~l~medgD~Idv~~~q 89 (98)
.+.+... |..|...-|. ++|++..|+.+.+.++.
T Consensus 24 ~V~l~~~~g~~l~a~it~~s~~~l~L~~G~~V~a~ika 61 (68)
T 1gut_A 24 EVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKS 61 (68)
T ss_dssp EEEEEETTSCEEEEEEEHHHHHHHTCCTTCEEEEECCG
T ss_pred EEEEEeCCCCEEEEEeCHHHHHHCCCCCCCEEEEEEec
Confidence 4455553 5566655454 56999999999988764
No 433
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=22.07 E-value=63 Score=20.05 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.3
Q ss_pred CCcEEEEEEccCCCEEEEEEcCcc
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDV 37 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t 37 (98)
+..+.|.| .|..++|+|.++.
T Consensus 42 ~~F~~isV---~g~aVTFrV~~N~ 62 (99)
T 4hti_A 42 SAFADVEV---LGPAVTFKVSANV 62 (99)
T ss_dssp GGEEEEEE---ETTEEEEEECCCT
T ss_pred hheeeeee---cCceEEEEeccCC
Confidence 56778887 6889999999876
No 434
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=21.95 E-value=60 Score=20.01 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=18.2
Q ss_pred cEEEEEEccCCCEEEEEEcCccH
Q 045424 16 LINLIIKSQDGDKRFFQFNHDVE 38 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t~ 38 (98)
.-+++|.......+.||||-+.+
T Consensus 18 ~~~l~L~N~t~~~vaFKVKtT~p 40 (109)
T 1row_A 18 SSTHKLVNGGAEKIVFKIKSSNN 40 (109)
T ss_dssp EEEEEEEECSSSCEEEEEEESCS
T ss_pred eEEEEEEcCCCCeEEEEEEeCCC
Confidence 46788887777888999987765
No 435
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.69 E-value=1.3e+02 Score=17.69 Aligned_cols=45 Identities=9% Similarity=0.021 Sum_probs=32.1
Q ss_pred HHhcCCCCcceeEEECCeecCCCCChhhc--CCCCCCEEEEEceecC
Q 045424 47 CETKSQPFKSTPFLINGNRFDYSKTADQL--GLKDGDEIDAMYHAFG 91 (98)
Q Consensus 47 ~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l--~medgD~Idv~~~q~G 91 (98)
|++.|+.....-+.+||..+......+.+ ....|+.|.+.+..-|
T Consensus 55 A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~ 101 (117)
T 1uit_A 55 AHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNP 101 (117)
T ss_dssp HHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCS
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence 45568999999999999999865433322 2357888888876544
No 436
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.49 E-value=46 Score=18.67 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=16.9
Q ss_pred CChhhcCCCCCCEEEEEceec
Q 045424 70 KTADQLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~~l~medgD~Idv~~~q~ 90 (98)
..+.+|.+.-||+|.|.-+..
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~ 49 (80)
T 2d8h_A 29 QQPGDLNFQAGDRITVISKTD 49 (80)
T ss_dssp SSTTBCEECTTCEEEEEECCS
T ss_pred CCCCeeeEcCCCEEEEeECcC
Confidence 356789999999999987653
No 437
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=21.42 E-value=2e+02 Score=19.55 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=34.7
Q ss_pred CcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHhcCCCC
Q 045424 15 HLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPF 54 (98)
Q Consensus 15 ~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~ 54 (98)
..+.|+|-..+|....+.|.++++-..|....+++.++..
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~ 72 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDC 72 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCC
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCC
Confidence 5677888888999999999999999999999999888743
No 438
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=21.26 E-value=1.3e+02 Score=17.46 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=25.6
Q ss_pred CCcEEEEEEccCCCEEEEEEcCccHHHHHHHHHHHh
Q 045424 14 QHLINLIIKSQDGDKRFFQFNHDVEIKRLLIKYCET 49 (98)
Q Consensus 14 ~~~I~I~v~~~~g~~~~f~Ik~~t~l~kL~~~y~~~ 49 (98)
+..|.|.|-+..|....|. ++.+.++++.|.+.
T Consensus 39 daeV~livfs~~gk~~~~~---s~~~~~il~ry~~~ 71 (77)
T 1egw_A 39 DCEIALIIFNSSNKLFQYA---STDMDKVLLKYTEY 71 (77)
T ss_dssp TCEEEEEEECTTCCEEEEE---SSCHHHHHHHHHHC
T ss_pred CCeEEEEEECCCCCEeeCC---CCCHHHHHHHHHhc
Confidence 3457777888889877774 56799999999764
No 439
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=21.22 E-value=86 Score=17.81 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=16.2
Q ss_pred ecCCCCChhhcCCCCCCEEEEE
Q 045424 65 RFDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 65 ~l~~~~Tp~~l~medgD~Idv~ 86 (98)
.+.++..++..+|+.||+|-.+
T Consensus 35 ~V~~~spA~~aGL~~GD~I~~i 56 (93)
T 2dls_A 35 SVRPGGAAMKAGVKEGDRIIKV 56 (93)
T ss_dssp EECSSSTTTTTTCCSSCEEEEE
T ss_pred EECCCCHHHHcCCCCCCEEEEE
Confidence 3556666777889999988654
No 440
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=21.07 E-value=1.7e+02 Score=18.70 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=27.2
Q ss_pred CCCEEEEEEcCccHHHHHHHHHHHhcCCCC
Q 045424 25 DGDKRFFQFNHDVEIKRLLIKYCETKSQPF 54 (98)
Q Consensus 25 ~g~~~~f~Ik~~t~l~kL~~~y~~~~g~~~ 54 (98)
.|+.+.+++.+.+.+..-...||++.++..
T Consensus 14 ~gr~~~lrl~~Gedl~~~l~~~~~~~~i~~ 43 (149)
T 3htn_A 14 IGNKYIVSINNHTEIVKALNAFCKEKGILS 43 (149)
T ss_dssp ETTEEEEEECTTCBHHHHHHHHHHHHTCCS
T ss_pred cCCEEEEEECCCChHHHHHHHHHHHcCCcE
Confidence 578899999999999999999999999864
No 441
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=20.99 E-value=88 Score=24.64 Aligned_cols=54 Identities=2% Similarity=0.053 Sum_probs=39.6
Q ss_pred EEccCCC----EEEEEEcCccHHHHHHHHHHHhcCCCC-c--ceeEEEC--C--eecCCCCChhh
Q 045424 21 IKSQDGD----KRFFQFNHDVEIKRLLIKYCETKSQPF-K--STPFLIN--G--NRFDYSKTADQ 74 (98)
Q Consensus 21 v~~~~g~----~~~f~Ik~~t~l~kL~~~y~~~~g~~~-~--~~rF~fd--G--~~l~~~~Tp~~ 74 (98)
|-..+|. ...|++..+++.+.|++..|++.++.. + .++|... | ..|.++.|...
T Consensus 12 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~ 76 (656)
T 2j0j_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (656)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred EeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHH
Confidence 4445665 789999999999999999999999843 3 4444443 3 36677777665
No 442
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=20.93 E-value=68 Score=18.16 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=15.2
Q ss_pred cCCCCChhhcCCCCCCEEEEE
Q 045424 66 FDYSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 66 l~~~~Tp~~l~medgD~Idv~ 86 (98)
+.++.-++..||..||+|-.+
T Consensus 31 V~~~spA~~aGl~~GD~I~~v 51 (91)
T 2f5y_A 31 VDSGGPAERAGLQQLDTVLQL 51 (91)
T ss_dssp ECTTSHHHHHTCCTTCEEEEE
T ss_pred ECCCCHHHHcCCCCCCEEEEE
Confidence 455566667899999988654
No 443
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=20.80 E-value=2.5e+02 Score=20.60 Aligned_cols=71 Identities=8% Similarity=0.051 Sum_probs=43.3
Q ss_pred CCcEEEEEEccCC----------CEEEEEEcC-ccHHHHHHHHHHHhcCC----CCcceeEEECCeec--------CCCC
Q 045424 14 QHLINLIIKSQDG----------DKRFFQFNH-DVEIKRLLIKYCETKSQ----PFKSTPFLINGNRF--------DYSK 70 (98)
Q Consensus 14 ~~~I~I~v~~~~g----------~~~~f~Ik~-~t~l~kL~~~y~~~~g~----~~~~~rF~fdG~~l--------~~~~ 70 (98)
++.++|.|..... ++=.|.+.. .. .|+++.+..=|+ +.+.+++.=+|+.. ...+
T Consensus 138 ~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~---tl~~ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~ 214 (359)
T 2j58_A 138 SPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPL---TVMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGD 214 (359)
T ss_dssp SCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCC---BHHHHHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCB
T ss_pred CCeEEEEEccCCceEEEEEceecCCeEEEeCCCCC---cHHHHHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCC
Confidence 4556666654433 233455555 33 466666766665 34677777677643 2344
Q ss_pred ChhhcCCCCCCEEEEEc
Q 045424 71 TADQLGLKDGDEIDAMY 87 (98)
Q Consensus 71 Tp~~l~medgD~Idv~~ 87 (98)
...+.-|.+||+|.|--
T Consensus 215 ~~~~~~L~~GD~I~Vp~ 231 (359)
T 2j58_A 215 LTQNHLLYHGDILFIPS 231 (359)
T ss_dssp GGGCCBCCTTCEEEECB
T ss_pred cccceeccCCCeEEEee
Confidence 56778899999998853
No 444
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=20.63 E-value=69 Score=20.88 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHHHhcCCCCcce
Q 045424 36 DVEIKRLLIKYCETKSQPFKST 57 (98)
Q Consensus 36 ~t~l~kL~~~y~~~~g~~~~~~ 57 (98)
--.+..+..+||+..|+.++.+
T Consensus 133 ~~~~~~~~~~~~~~~g~~~~~~ 154 (159)
T 3ebr_A 133 WKTSMDRYLNYCKAHGIRPKDL 154 (159)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCcccc
Confidence 3467778899999999988665
No 445
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=20.62 E-value=78 Score=17.54 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.1
Q ss_pred CChh-hcCCCCCCEEEEEceec
Q 045424 70 KTAD-QLGLKDGDEIDAMYHAF 90 (98)
Q Consensus 70 ~Tp~-~l~medgD~Idv~~~q~ 90 (98)
..+. +|.+.-||+|.|.-+..
T Consensus 26 ~~~~~eLs~~~Gd~i~v~~~~~ 47 (80)
T 2v1r_A 26 ENPEMEVALKKGDLMAILSKKD 47 (80)
T ss_dssp SSTTTBCCBCTTCEEEEEEEEC
T ss_pred CCCCCEecCCCCCEEEEEECCC
Confidence 4566 99999999999987654
No 446
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=20.61 E-value=59 Score=19.64 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=10.5
Q ss_pred hcCCCCCCEEEEE
Q 045424 74 QLGLKDGDEIDAM 86 (98)
Q Consensus 74 ~l~medgD~Idv~ 86 (98)
...|.+||+|.+-
T Consensus 82 ~~~L~~GD~i~~G 94 (116)
T 1lgp_A 82 TCPLQTGDVIYLV 94 (116)
T ss_dssp CCCCCTTCEEEEE
T ss_pred cEECCCCCEEEEe
Confidence 4679999999874
No 447
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=20.47 E-value=78 Score=19.62 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=18.7
Q ss_pred cEEEEEEccCCCEEEEEEcCccH
Q 045424 16 LINLIIKSQDGDKRFFQFNHDVE 38 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t~ 38 (98)
.-.|+|.......+.|+||.+.|
T Consensus 30 ~~~l~L~N~s~~~vaFKVKTT~p 52 (128)
T 1z9l_A 30 TTNLKLQNPSDRKVCFKVKTTAP 52 (128)
T ss_dssp EEEEEEECCSSSCEEEEEEESCG
T ss_pred EEEEEEECCCCCeEEEEEECCCC
Confidence 45688877777889999998877
No 448
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=20.40 E-value=66 Score=17.37 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=21.9
Q ss_pred EEEEcCccHHHHHHHHHHHhcC-CCCcceeEEECCeecC
Q 045424 30 FFQFNHDVEIKRLLIKYCETKS-QPFKSTPFLINGNRFD 67 (98)
Q Consensus 30 ~f~Ik~~t~l~kL~~~y~~~~g-~~~~~~rF~fdG~~l~ 67 (98)
.-.|.+..+ +++.| +.....-+.+||..+.
T Consensus 25 V~~v~~~s~--------A~~aG~l~~GD~I~~ing~~v~ 55 (81)
T 2rcz_A 25 VKEISQDSL--------AARDGNIQEGDVVLKINGTVTE 55 (81)
T ss_dssp EEEECTTSH--------HHHHSSCCTTCEEEEETTEECT
T ss_pred EEEECCCCh--------HHHCCCCCCCCEEEEECCEECC
Confidence 445666554 44558 8888888999999987
No 449
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=20.34 E-value=1e+02 Score=18.33 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=16.0
Q ss_pred cEEEEEEccCCCEEEEEEcCcc--HHHH
Q 045424 16 LINLIIKSQDGDKRFFQFNHDV--EIKR 41 (98)
Q Consensus 16 ~I~I~v~~~~g~~~~f~Ik~~t--~l~k 41 (98)
.|+|+++- +|.++.+.|+-+| .+.+
T Consensus 7 ditikiqr-dgqeieidirvstgkeler 33 (96)
T 2jvf_A 7 DITIKIQR-DGQEIEIDIRVSTGKELER 33 (96)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSSSHHHH
T ss_pred EEEEEEee-CCeEEEEEEEEcccHHHHH
Confidence 57888874 7887766555444 4444
No 450
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=20.33 E-value=55 Score=19.90 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=9.2
Q ss_pred hcCCCCCCEEEE
Q 045424 74 QLGLKDGDEIDA 85 (98)
Q Consensus 74 ~l~medgD~Idv 85 (98)
...|.+||+|.+
T Consensus 90 ~~~L~~gd~i~l 101 (118)
T 1uht_A 90 SVNLGDGDVIKL 101 (118)
T ss_dssp EEECCTTEEEEE
T ss_pred eEEcCCCCEEEE
Confidence 456889998865
No 451
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=20.16 E-value=1e+02 Score=17.73 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=27.5
Q ss_pred HHhcCCCCcceeEEECCeecCCCCChhhcC---CCCCCEEEEEceecCCC
Q 045424 47 CETKSQPFKSTPFLINGNRFDYSKTADQLG---LKDGDEIDAMYHAFGGG 93 (98)
Q Consensus 47 ~~~~g~~~~~~rF~fdG~~l~~~~Tp~~l~---medgD~Idv~~~q~GG~ 93 (98)
|++.|+.....-+.+||..+... +..++- -..++.|.+.+..-++-
T Consensus 49 A~~aGL~~GD~I~~vng~~v~~~-~~~~~~~~l~~~~~~v~l~v~R~~~~ 97 (100)
T 1whd_A 49 AERAGLQQLDTVLQLNERPVEHW-KCVELAHEIRSCPSEIILLVWRVSGP 97 (100)
T ss_dssp HHHHTCCSSCEEEEETTEECTTC-CHHHHHHHHHHCSSEEEEEEEECCSS
T ss_pred HHHcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCCeEEEEEEECCCC
Confidence 55668888888888888888752 222221 11355676666554443
No 452
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=20.12 E-value=77 Score=19.57 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=15.4
Q ss_pred ECCeecCCCCChhhcCCCCCCEEEE
Q 045424 61 INGNRFDYSKTADQLGLKDGDEIDA 85 (98)
Q Consensus 61 fdG~~l~~~~Tp~~l~medgD~Idv 85 (98)
.+|.+|... ....|.+||+|.+
T Consensus 83 vNg~~l~~~---~~~~L~~Gd~I~l 104 (127)
T 1g6g_A 83 LNGQKVEKN---SNQLLSQGDEITV 104 (127)
T ss_dssp ETTEECCTT---CCEECCTTCEEEE
T ss_pred ECCEEcCCC---CeEEcCCCCEEEE
Confidence 377777653 2366889999977
No 453
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=20.09 E-value=69 Score=17.97 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=12.6
Q ss_pred CCCChhhcCCCCCCEEEEE
Q 045424 68 YSKTADQLGLKDGDEIDAM 86 (98)
Q Consensus 68 ~~~Tp~~l~medgD~Idv~ 86 (98)
++.-++..+|+.||+|-.+
T Consensus 13 ~~spA~~aGl~~GD~I~~i 31 (91)
T 2zpm_A 13 PNSAASXAGLQAGDRIVXV 31 (91)
T ss_dssp TTSHHHHTTCCTTCEEEEE
T ss_pred CCChHHhcCCCCCCEEEEE
Confidence 3333445689999988654
Done!