BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045430
         (309 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
           Lanata
 pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
           Lanata In Complex With Nadp
          Length = 364

 Score =  437 bits (1124), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/309 (68%), Positives = 244/309 (78%), Gaps = 5/309 (1%)

Query: 1   DDTQAKLSKLTDVTHIFYVTWASRPTEAENCEVNGAMLRNVLRSVIPNAPNLRHVCLQTG 60
           DD+QAKLS LTDVTH+FYVTWA+R TE ENCE N  M RNVL +VIPN PNL+H+ LQTG
Sbjct: 61  DDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTG 120

Query: 61  GKHYVGPFESFGKIRPHDTPFTEDLPRLNVTNFYYTQEDILFEEVEKRKGPLSLTWSVHR 120
            KHY+GPFES+GKI  HD P+TEDLPRL   NFYY  EDI+ EEVEK++G   LTWSVHR
Sbjct: 121 RKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEG---LTWSVHR 177

Query: 121 PHIIFGFSPYSMMNVVGTLCVYAAICKHEGVPLLFPGSKDCWEGYSVASDADLIAEQHIW 180
           P  IFGFSPYSMMN+VGTLCVYAAICKHEG  L F G K  W+GYS  SDADLIAE HIW
Sbjct: 178 PGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIW 237

Query: 181 AAVDPYARNEAFNCSNGDVFKWKHLWKVLAEQFEIENYGLPQDGERVRLEEIMRGKEGVW 240
           AAVDPYA+NEAFN SNGDVFKWKH WKVLAEQF +E  G  ++G  ++L+++M+GKE VW
Sbjct: 238 AAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVE-CGEYEEGVDLKLQDLMKGKEPVW 296

Query: 241 EQIVKENQLQLTKLSEVAVWWFAXXXXXXXXXXXXSMNKSKEHGFLGFRNSKNSFVNWID 300
           E+IV+EN L  TKL +V +WWF             SMNKSKEHGFLGFRNSKN+F++WID
Sbjct: 297 EEIVRENGLTPTKLKDVGIWWFG-DVILGNECFLDSMNKSKEHGFLGFRNSKNAFISWID 355

Query: 301 KMKTYRIVP 309
           K K Y+IVP
Sbjct: 356 KAKAYKIVP 364


>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
           Yeast
          Length = 487

 Score = 34.7 bits (78), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 170 DADLIAEQHIWAAVDPYARNEAFNCSNGDVFKWKHLWKVLAEQFEIENYGLPQDGERVRL 229
           D ++  E+H    +D  +    F  S     ++ H  +++ +Q+ +E + LP+DG+ VRL
Sbjct: 272 DMEMAFEEHYHEVLDTLSELFVFIFSELPK-RFAHEIELVRKQYPVEEFKLPKDGKMVRL 330

Query: 230 E-----EIMR--GKE-GVWEQIVKENQLQLTKL 254
                 E++R  GKE G +E +  EN+  L KL
Sbjct: 331 TYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKL 363


>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
           Structure Of Yeast Aspartyl-Trna Synthetase Complexed
           With Trna Asp
 pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
           Structure Of Yeast Aspartyl-Trna Synthetase Complexed
           With Trna Asp
 pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
           Structural And Functional Aspects Of The Aminoacylation
           Reaction
 pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
           Structural And Functional Aspects Of The Aminoacylation
           Reaction
          Length = 490

 Score = 34.7 bits (78), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 8/62 (12%)

Query: 201 KWKHLWKVLAEQFEIENYGLPQDGERVRLE-----EIMR--GKE-GVWEQIVKENQLQLT 252
           ++ H  +++ +Q+ +E + LP+DG+ VRL      E++R  GKE G +E +  EN+  L 
Sbjct: 305 RFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLG 364

Query: 253 KL 254
           KL
Sbjct: 365 KL 366


>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
           With Dna, Dgtp, Mg And Zn
 pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
           With Dna, Dgtp And Mn
 pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
           With Dna, Dgtp, Mn And Zn
          Length = 1041

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 37  MLRNVLRSVIPNAPNLRHVCLQTGGKHYVGPFES-FGKIRPHDTPFTEDLPRLNVTNFYY 95
           M++N++RS++     L    + TG  HY+ P +  + KI  H       L R  + + Y+
Sbjct: 305 MIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKILIHSQGGANPLNRHELPDVYF 364


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,812,250
Number of Sequences: 62578
Number of extensions: 410753
Number of successful extensions: 870
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 5
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)