Query 045431
Match_columns 433
No_of_seqs 209 out of 2643
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 23:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei9_A LL-diaminopimelate amin 100.0 9.6E-56 3.3E-60 433.2 38.5 395 37-431 30-424 (432)
2 3qgu_A LL-diaminopimelate amin 100.0 3.3E-54 1.1E-58 424.4 41.3 412 20-433 23-438 (449)
3 2x5f_A Aspartate_tyrosine_phen 100.0 5.7E-53 1.9E-57 413.3 22.0 382 16-432 1-426 (430)
4 3asa_A LL-diaminopimelate amin 100.0 1.3E-50 4.5E-55 392.7 36.0 383 34-433 4-391 (400)
5 1b5p_A Protein (aspartate amin 100.0 5E-50 1.7E-54 386.6 35.8 342 62-433 30-383 (385)
6 3h14_A Aminotransferase, class 100.0 1.1E-47 3.8E-52 371.1 37.2 341 61-432 29-379 (391)
7 3b46_A Aminotransferase BNA3; 100.0 1.7E-48 5.8E-53 383.1 28.9 346 62-431 56-443 (447)
8 2o1b_A Aminotransferase, class 100.0 7.1E-48 2.4E-52 373.9 32.9 347 61-433 45-401 (404)
9 3jtx_A Aminotransferase; NP_28 100.0 4.6E-47 1.6E-51 367.3 37.0 344 60-433 27-396 (396)
10 1gd9_A Aspartate aminotransfer 100.0 4.4E-47 1.5E-51 366.6 34.9 345 63-432 26-383 (389)
11 2x5d_A Probable aminotransfera 100.0 2.2E-47 7.4E-52 371.6 32.6 347 61-432 35-395 (412)
12 2dou_A Probable N-succinyldiam 100.0 5E-47 1.7E-51 364.5 34.7 344 61-433 23-376 (376)
13 3fvs_A Kynurenine--oxoglutarat 100.0 2.1E-47 7.2E-52 372.9 30.5 347 63-432 28-419 (422)
14 3ezs_A Aminotransferase ASPB; 100.0 2.4E-47 8.1E-52 366.8 30.3 336 64-433 24-373 (376)
15 3e2y_A Kynurenine-oxoglutarate 100.0 7.7E-47 2.6E-51 367.5 32.7 346 62-431 22-409 (410)
16 3aow_A Putative uncharacterize 100.0 3.3E-47 1.1E-51 373.4 29.6 344 63-432 76-442 (448)
17 1o4s_A Aspartate aminotransfer 100.0 3.7E-46 1.3E-50 360.1 36.0 340 62-433 40-387 (389)
18 3dyd_A Tyrosine aminotransfera 100.0 4.5E-46 1.5E-50 363.8 35.4 351 61-432 52-421 (427)
19 1u08_A Hypothetical aminotrans 100.0 2.1E-46 7.1E-51 361.5 32.5 340 64-430 31-385 (386)
20 3kax_A Aminotransferase, class 100.0 5.9E-46 2E-50 357.9 35.5 344 62-433 23-383 (383)
21 1yiz_A Kynurenine aminotransfe 100.0 5.1E-46 1.7E-50 363.9 34.1 348 64-433 38-427 (429)
22 3fdb_A Beta C-S lyase, putativ 100.0 9.8E-47 3.4E-51 362.6 28.5 351 52-433 12-374 (377)
23 3ele_A Amino transferase; RER0 100.0 1.2E-45 4.2E-50 357.6 36.4 343 62-432 34-393 (398)
24 1j32_A Aspartate aminotransfer 100.0 5.8E-46 2E-50 358.6 33.0 344 61-432 28-384 (388)
25 2z61_A Probable aspartate amin 100.0 8.8E-46 3E-50 355.1 33.5 339 62-433 28-369 (370)
26 2o0r_A RV0858C (N-succinyldiam 100.0 6.4E-46 2.2E-50 361.1 32.2 344 64-433 26-394 (411)
27 3nra_A Aspartate aminotransfer 100.0 9.4E-46 3.2E-50 359.4 31.2 344 64-432 40-402 (407)
28 1xi9_A Putative transaminase; 100.0 1.1E-45 3.7E-50 358.9 31.6 342 62-432 37-400 (406)
29 2gb3_A Aspartate aminotransfer 100.0 1.3E-44 4.6E-49 351.5 37.7 341 62-432 42-399 (409)
30 3dzz_A Putative pyridoxal 5'-p 100.0 3.9E-45 1.3E-49 353.1 33.3 344 61-432 25-386 (391)
31 4dq6_A Putative pyridoxal phos 100.0 7E-45 2.4E-49 351.3 33.5 344 62-433 31-391 (391)
32 3g0t_A Putative aminotransfera 100.0 3.3E-45 1.1E-49 358.9 31.3 353 61-432 42-434 (437)
33 1bw0_A TAT, protein (tyrosine 100.0 9.8E-45 3.3E-49 353.3 34.2 346 63-432 33-410 (416)
34 3k7y_A Aspartate aminotransfer 100.0 1.9E-45 6.6E-50 354.6 27.4 335 62-432 28-402 (405)
35 2r2n_A Kynurenine/alpha-aminoa 100.0 2.2E-45 7.7E-50 358.7 27.2 341 63-432 31-421 (425)
36 3d6k_A Putative aminotransfera 100.0 1.2E-45 4E-50 360.3 23.8 371 18-432 3-415 (422)
37 3ihj_A Alanine aminotransferas 100.0 6.5E-45 2.2E-49 361.2 28.8 333 78-432 103-490 (498)
38 1c7n_A Cystalysin; transferase 100.0 1.6E-44 5.3E-49 349.9 29.9 342 63-432 31-390 (399)
39 1v2d_A Glutamine aminotransfer 100.0 4E-44 1.4E-48 344.9 32.3 333 64-433 26-369 (381)
40 3l8a_A METC, putative aminotra 100.0 3.3E-44 1.1E-48 350.0 31.3 344 62-433 60-420 (421)
41 1d2f_A MALY protein; aminotran 100.0 4.8E-44 1.6E-48 345.5 32.1 338 64-432 29-386 (390)
42 1vp4_A Aminotransferase, putat 100.0 1.1E-44 3.9E-49 353.8 25.8 345 62-432 42-415 (425)
43 3tcm_A Alanine aminotransferas 100.0 4.7E-44 1.6E-48 355.6 29.4 334 77-432 107-491 (500)
44 3get_A Histidinol-phosphate am 100.0 6.7E-44 2.3E-48 341.3 28.8 327 63-433 30-365 (365)
45 2zyj_A Alpha-aminodipate amino 100.0 5E-44 1.7E-48 346.2 27.2 340 63-432 32-390 (397)
46 1iay_A ACC synthase 2, 1-amino 100.0 6.6E-44 2.3E-48 348.8 27.6 347 63-432 36-424 (428)
47 3ly1_A Putative histidinol-pho 100.0 1.5E-43 5.1E-48 337.5 29.2 330 60-432 13-349 (354)
48 3ffh_A Histidinol-phosphate am 100.0 3.5E-43 1.2E-47 336.1 31.1 328 62-432 31-363 (363)
49 3piu_A 1-aminocyclopropane-1-c 100.0 1.1E-43 3.9E-48 347.8 28.0 347 64-432 39-429 (435)
50 3g7q_A Valine-pyruvate aminotr 100.0 4E-43 1.4E-47 342.0 31.5 352 62-432 30-410 (417)
51 3ppl_A Aspartate aminotransfer 100.0 2E-44 6.9E-49 352.3 22.2 340 64-432 34-417 (427)
52 2zc0_A Alanine glyoxylate tran 100.0 3.7E-43 1.3E-47 341.2 30.6 345 62-432 33-401 (407)
53 1lc5_A COBD, L-threonine-O-3-p 100.0 2.2E-42 7.4E-47 330.8 35.3 328 62-432 23-357 (364)
54 3hdo_A Histidinol-phosphate am 100.0 4.3E-42 1.5E-46 328.2 37.1 328 61-432 24-352 (360)
55 3fkd_A L-threonine-O-3-phospha 100.0 6.3E-43 2.2E-47 332.7 30.2 325 61-432 13-339 (350)
56 3bwn_A AT1G70560, L-tryptophan 100.0 1.9E-44 6.6E-49 347.8 18.5 329 61-432 20-384 (391)
57 4f4e_A Aromatic-amino-acid ami 100.0 3E-43 1E-47 343.1 26.6 338 62-433 48-420 (420)
58 7aat_A Aspartate aminotransfer 100.0 1.5E-43 5.1E-48 343.3 24.1 338 62-433 27-401 (401)
59 1fg7_A Histidinol phosphate am 100.0 1.8E-42 6.1E-47 330.2 31.1 320 64-432 30-355 (356)
60 3ftb_A Histidinol-phosphate am 100.0 5.2E-42 1.8E-46 327.6 34.4 328 61-430 24-356 (361)
61 3rq1_A Aminotransferase class 100.0 7.9E-43 2.7E-47 340.1 27.8 335 62-432 37-412 (418)
62 3euc_A Histidinol-phosphate am 100.0 1.7E-42 6E-47 331.8 29.1 328 63-433 30-366 (367)
63 3ez1_A Aminotransferase MOCR f 100.0 1.9E-43 6.5E-48 345.0 21.3 339 64-432 26-412 (423)
64 3fsl_A Aromatic-amino-acid ami 100.0 1.3E-42 4.6E-47 336.1 27.1 338 61-432 24-397 (397)
65 3f6t_A Aspartate aminotransfer 100.0 4.4E-43 1.5E-47 350.7 23.4 343 64-432 104-522 (533)
66 3t18_A Aminotransferase class 100.0 3.5E-42 1.2E-46 335.0 28.5 332 62-432 36-407 (413)
67 2zy4_A L-aspartate beta-decarb 100.0 8.1E-43 2.8E-47 348.7 23.7 335 65-432 106-519 (546)
68 3op7_A Aminotransferase class 100.0 7.9E-42 2.7E-46 328.2 28.2 308 96-433 54-369 (375)
69 3b1d_A Betac-S lyase; HET: PLP 100.0 8E-46 2.7E-50 358.2 0.0 342 64-433 32-391 (392)
70 4eu1_A Mitochondrial aspartate 100.0 9.6E-42 3.3E-46 331.5 26.2 338 61-433 39-409 (409)
71 3p1t_A Putative histidinol-pho 100.0 2.5E-40 8.6E-45 313.0 33.2 320 62-433 15-335 (337)
72 1ajs_A Aspartate aminotransfer 100.0 1.6E-41 5.5E-46 330.2 24.7 339 61-432 28-408 (412)
73 3if2_A Aminotransferase; YP_26 100.0 3.4E-41 1.2E-45 331.1 27.0 352 63-432 31-437 (444)
74 3meb_A Aspartate aminotransfer 100.0 3.4E-41 1.2E-45 331.0 26.0 340 62-432 48-441 (448)
75 2q7w_A Aspartate aminotransfer 100.0 1.3E-41 4.6E-46 329.0 22.5 336 63-432 26-396 (396)
76 1uu1_A Histidinol-phosphate am 100.0 2.2E-40 7.6E-45 313.1 29.6 316 64-432 20-335 (335)
77 2hox_A ALLIIN lyase 1; cystein 100.0 1.8E-41 6.2E-46 330.3 22.7 327 63-433 56-423 (427)
78 1yaa_A Aspartate aminotransfer 100.0 2E-41 6.8E-46 329.6 22.7 337 61-432 27-408 (412)
79 3cq5_A Histidinol-phosphate am 100.0 6.6E-40 2.3E-44 314.1 32.1 327 65-433 32-366 (369)
80 4h51_A Aspartate aminotransfer 100.0 7.5E-40 2.6E-44 315.5 27.7 339 64-433 45-415 (420)
81 2ay1_A Aroat, aromatic amino a 100.0 3.3E-40 1.1E-44 319.0 22.3 336 62-432 25-393 (394)
82 3a2b_A Serine palmitoyltransfe 100.0 2E-38 6.8E-43 307.0 25.5 337 62-432 42-389 (398)
83 3tqx_A 2-amino-3-ketobutyrate 100.0 1E-35 3.5E-40 287.9 21.9 338 61-432 41-393 (399)
84 1bs0_A Protein (8-amino-7-oxon 100.0 7.2E-35 2.5E-39 280.6 23.7 334 62-431 38-383 (384)
85 2w8t_A SPT, serine palmitoyltr 100.0 3.6E-34 1.2E-38 279.5 26.4 335 61-432 62-412 (427)
86 2bwn_A 5-aminolevulinate synth 100.0 2.2E-34 7.6E-39 278.8 23.6 339 62-433 45-398 (401)
87 1eg5_A Aminotransferase; PLP-d 100.0 9.2E-34 3.2E-38 272.6 26.2 332 66-432 3-373 (384)
88 1fc4_A 2-amino-3-ketobutyrate 100.0 8.4E-35 2.9E-39 281.7 18.9 333 61-432 43-394 (401)
89 1t3i_A Probable cysteine desul 100.0 9.4E-34 3.2E-38 275.9 22.8 332 63-432 27-410 (420)
90 1kmj_A Selenocysteine lyase; p 100.0 3.2E-33 1.1E-37 270.9 25.7 332 63-432 22-402 (406)
91 1vjo_A Alanine--glyoxylate ami 100.0 1.2E-33 4.2E-38 272.8 22.6 316 75-433 43-393 (393)
92 1iug_A Putative aspartate amin 100.0 5.7E-33 1.9E-37 263.9 25.9 321 74-432 9-345 (352)
93 2dr1_A PH1308 protein, 386AA l 100.0 8.3E-33 2.8E-37 266.2 25.4 322 75-432 29-376 (386)
94 1e5e_A MGL, methionine gamma-l 100.0 5.5E-33 1.9E-37 268.7 23.2 316 66-432 21-392 (404)
95 2eh6_A Acoat, acetylornithine 100.0 2.9E-33 9.9E-38 268.5 21.0 335 61-432 26-375 (375)
96 3kki_A CAI-1 autoinducer synth 100.0 4.2E-32 1.4E-36 263.5 24.9 331 61-432 57-401 (409)
97 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.2E-33 4.2E-38 270.6 13.9 326 63-432 7-367 (371)
98 3ruy_A Ornithine aminotransfer 100.0 1.1E-32 3.8E-37 266.0 20.6 337 61-433 34-392 (392)
99 1elu_A L-cysteine/L-cystine C- 100.0 3.7E-32 1.3E-36 262.0 23.6 333 64-431 16-388 (390)
100 4adb_A Succinylornithine trans 100.0 7.4E-32 2.5E-36 261.4 23.3 338 60-432 36-397 (406)
101 4eb5_A Probable cysteine desul 100.0 1E-31 3.5E-36 258.2 23.4 331 68-432 4-370 (382)
102 2ord_A Acoat, acetylornithine 100.0 1.5E-32 5.2E-37 265.5 17.2 337 61-432 38-394 (397)
103 3f9t_A TDC, L-tyrosine decarbo 100.0 2.6E-31 8.7E-36 256.5 25.2 324 76-433 41-396 (397)
104 2ch1_A 3-hydroxykynurenine tra 100.0 5.4E-32 1.9E-36 261.5 20.5 317 71-432 23-380 (396)
105 2z9v_A Aspartate aminotransfer 100.0 9.6E-32 3.3E-36 259.4 21.7 322 66-432 10-368 (392)
106 3zrp_A Serine-pyruvate aminotr 100.0 4E-32 1.4E-36 261.1 18.5 314 74-432 10-360 (384)
107 3i4j_A Aminotransferase, class 100.0 1.5E-31 5.2E-36 261.3 22.8 353 60-432 26-425 (430)
108 1svv_A Threonine aldolase; str 100.0 2E-31 7E-36 253.8 23.0 327 63-433 13-356 (359)
109 4hvk_A Probable cysteine desul 100.0 2.3E-31 7.7E-36 255.5 22.0 332 68-432 4-370 (382)
110 1sff_A 4-aminobutyrate aminotr 100.0 4.2E-32 1.4E-36 264.9 16.9 343 61-432 39-421 (426)
111 3cai_A Possible aminotransfera 100.0 6.5E-31 2.2E-35 254.8 24.9 327 64-431 26-405 (406)
112 2huf_A Alanine glyoxylate amin 100.0 1.9E-31 6.4E-36 257.4 20.4 321 64-432 19-380 (393)
113 1v72_A Aldolase; PLP-dependent 100.0 1.8E-30 6.1E-35 247.1 26.1 320 63-433 7-351 (356)
114 1m32_A 2-aminoethylphosphonate 100.0 6.6E-31 2.3E-35 250.9 22.3 328 65-433 5-363 (366)
115 3lvm_A Cysteine desulfurase; s 100.0 6.9E-31 2.4E-35 256.0 22.1 342 60-432 18-396 (423)
116 3nnk_A Ureidoglycine-glyoxylat 100.0 8.8E-31 3E-35 254.2 21.0 314 74-432 21-387 (411)
117 3vax_A Putative uncharacterize 100.0 2.7E-31 9.3E-36 256.9 17.1 340 63-433 19-398 (400)
118 1vef_A Acetylornithine/acetyl- 100.0 2.9E-31 9.8E-36 256.4 17.0 341 61-433 43-395 (395)
119 2dkj_A Serine hydroxymethyltra 100.0 2.1E-30 7.2E-35 251.3 23.1 330 64-432 24-385 (407)
120 1jg8_A L-ALLO-threonine aldola 100.0 6.1E-31 2.1E-35 249.6 18.8 316 64-432 4-343 (347)
121 2aeu_A Hypothetical protein MJ 100.0 3E-30 1E-34 247.0 22.6 318 64-432 29-368 (374)
122 2eo5_A 419AA long hypothetical 100.0 6.3E-30 2.2E-34 248.8 25.0 335 61-432 40-415 (419)
123 3isl_A Purine catabolism prote 100.0 3.9E-30 1.3E-34 250.1 23.1 321 65-432 12-387 (416)
124 3kgw_A Alanine-glyoxylate amin 100.0 9.9E-31 3.4E-35 252.2 18.2 314 74-432 31-385 (393)
125 3ffr_A Phosphoserine aminotran 100.0 2.1E-29 7.2E-34 240.1 26.0 323 65-433 5-362 (362)
126 2pb2_A Acetylornithine/succiny 100.0 3.1E-30 1.1E-34 251.0 20.5 337 61-432 55-415 (420)
127 2yrr_A Aminotransferase, class 100.0 1.9E-30 6.6E-35 246.4 17.9 319 74-432 8-350 (353)
128 3n5m_A Adenosylmethionine-8-am 100.0 1.5E-29 5.1E-34 248.7 23.6 348 59-433 45-450 (452)
129 2rfv_A Methionine gamma-lyase; 100.0 8.6E-30 2.9E-34 246.3 21.4 320 67-431 24-396 (398)
130 3nx3_A Acoat, acetylornithine 100.0 2.8E-29 9.4E-34 242.5 24.2 341 60-432 33-392 (395)
131 3lws_A Aromatic amino acid bet 100.0 2.4E-30 8.2E-35 246.5 16.3 296 98-433 40-357 (357)
132 1zod_A DGD, 2,2-dialkylglycine 100.0 5.3E-30 1.8E-34 250.6 18.8 344 61-432 41-429 (433)
133 4ffc_A 4-aminobutyrate aminotr 100.0 1.5E-29 5.2E-34 248.3 21.7 350 58-432 59-446 (453)
134 3gju_A Putative aminotransfera 100.0 2.1E-29 7.1E-34 248.1 22.6 348 60-432 48-453 (460)
135 3f0h_A Aminotransferase; RER07 100.0 2.6E-29 9E-34 240.9 22.3 322 65-432 20-371 (376)
136 3dxv_A Alpha-amino-epsilon-cap 100.0 9.8E-30 3.4E-34 249.1 18.8 344 60-432 40-422 (439)
137 2bkw_A Alanine-glyoxylate amin 100.0 3.4E-29 1.2E-33 240.8 22.3 331 65-433 6-382 (385)
138 1s0a_A Adenosylmethionine-8-am 100.0 4.4E-29 1.5E-33 243.7 22.7 341 61-433 41-422 (429)
139 4a6r_A Omega transaminase; tra 100.0 4.5E-29 1.5E-33 245.6 22.6 348 59-432 46-446 (459)
140 2c0r_A PSAT, phosphoserine ami 100.0 6.3E-29 2.1E-33 237.1 22.1 327 65-432 5-358 (362)
141 1qz9_A Kynureninase; kynurenin 100.0 1.3E-28 4.5E-33 239.3 24.6 328 64-432 28-399 (416)
142 3oks_A 4-aminobutyrate transam 100.0 4E-29 1.4E-33 245.3 21.0 347 58-432 56-448 (451)
143 1b9h_A AHBA synthase, protein 100.0 2.5E-28 8.4E-33 235.3 25.9 314 71-432 5-385 (388)
144 1ibj_A CBL, cystathionine beta 100.0 2.1E-29 7.3E-34 246.8 18.2 323 64-432 90-459 (464)
145 3pj0_A LMO0305 protein; struct 100.0 5.4E-30 1.9E-34 244.2 13.4 325 64-432 14-359 (359)
146 2oat_A Ornithine aminotransfer 100.0 8.5E-29 2.9E-33 242.0 22.0 339 60-432 73-436 (439)
147 3l44_A Glutamate-1-semialdehyd 100.0 4E-29 1.4E-33 244.4 18.5 339 59-432 51-427 (434)
148 1z7d_A Ornithine aminotransfer 100.0 4E-29 1.4E-33 244.0 18.4 338 60-432 62-426 (433)
149 2ez2_A Beta-tyrosinase, tyrosi 100.0 3.3E-28 1.1E-32 239.4 25.1 324 64-432 43-428 (456)
150 3e9k_A Kynureninase; kynurenin 100.0 2.6E-29 8.9E-34 247.9 15.3 341 63-433 66-459 (465)
151 1w23_A Phosphoserine aminotran 100.0 5.8E-29 2E-33 237.1 16.2 322 65-432 4-357 (360)
152 3a9z_A Selenocysteine lyase; P 100.0 4.1E-28 1.4E-32 237.1 21.9 334 64-432 18-425 (432)
153 2po3_A 4-dehydrase; external a 100.0 1.1E-26 3.8E-31 226.4 31.9 311 67-432 20-383 (424)
154 3dod_A Adenosylmethionine-8-am 100.0 1.7E-28 5.8E-33 240.8 17.7 344 60-432 41-440 (448)
155 3k28_A Glutamate-1-semialdehyd 100.0 2.8E-28 9.4E-33 238.0 18.6 337 59-432 49-424 (429)
156 2cy8_A D-phgat, D-phenylglycin 100.0 1.8E-28 6.2E-33 241.0 17.3 337 60-432 54-432 (453)
157 1mdo_A ARNB aminotransferase; 100.0 9.2E-27 3.2E-31 224.6 27.7 310 64-433 9-384 (393)
158 3a8u_X Omega-amino acid--pyruv 100.0 3.1E-28 1E-32 239.2 16.7 341 61-432 48-444 (449)
159 3fq8_A Glutamate-1-semialdehyd 100.0 5.1E-28 1.7E-32 236.1 18.1 340 59-432 48-424 (427)
160 3i5t_A Aminotransferase; pyrid 100.0 3.1E-27 1.1E-31 233.0 23.7 343 59-432 50-451 (476)
161 1wyu_B Glycine dehydrogenase s 100.0 1.7E-27 5.9E-32 235.0 21.3 338 64-433 67-439 (474)
162 3tfu_A Adenosylmethionine-8-am 100.0 7.1E-28 2.4E-32 236.4 18.1 341 61-432 71-450 (457)
163 1ax4_A Tryptophanase; tryptoph 100.0 1.9E-27 6.6E-32 234.7 21.0 323 65-432 45-438 (467)
164 2fyf_A PSAT, phosphoserine ami 100.0 4E-27 1.4E-31 227.6 22.6 318 64-432 40-395 (398)
165 3mad_A Sphingosine-1-phosphate 100.0 5.1E-27 1.7E-31 234.3 24.0 327 78-432 109-466 (514)
166 3mc6_A Sphingosine-1-phosphate 100.0 6.9E-27 2.3E-31 232.5 24.7 330 76-432 75-434 (497)
167 4e77_A Glutamate-1-semialdehyd 100.0 1.4E-27 4.8E-32 233.1 19.2 341 59-433 49-427 (429)
168 2e7u_A Glutamate-1-semialdehyd 100.0 3.8E-28 1.3E-32 236.7 14.9 338 60-432 49-424 (424)
169 3n0l_A Serine hydroxymethyltra 100.0 1.2E-26 4E-31 225.7 24.5 334 64-432 26-386 (417)
170 2epj_A Glutamate-1-semialdehyd 100.0 6.4E-28 2.2E-32 235.8 15.2 338 60-432 53-428 (434)
171 1rv3_A Serine hydroxymethyltra 99.9 1.2E-26 4.2E-31 229.2 23.3 340 64-432 45-428 (483)
172 2oga_A Transaminase; PLP-depen 99.9 6.4E-27 2.2E-31 226.2 20.4 313 64-432 31-393 (399)
173 2vi8_A Serine hydroxymethyltra 99.9 1.1E-26 3.9E-31 224.8 22.2 330 64-433 25-385 (405)
174 3ecd_A Serine hydroxymethyltra 99.9 1E-26 3.5E-31 226.6 21.8 336 64-432 33-394 (425)
175 3hmu_A Aminotransferase, class 99.9 1.9E-27 6.6E-32 234.1 15.7 343 59-432 51-449 (472)
176 3gbx_A Serine hydroxymethyltra 99.9 1.4E-26 4.7E-31 225.3 21.5 332 65-432 32-393 (420)
177 1cs1_A CGS, protein (cystathio 99.9 8.9E-26 3.1E-30 217.2 25.3 286 103-432 50-384 (386)
178 1pff_A Methionine gamma-lyase; 99.9 3E-26 1E-30 215.8 20.2 277 109-432 2-331 (331)
179 3ndn_A O-succinylhomoserine su 99.9 4.4E-26 1.5E-30 220.4 21.9 281 106-432 82-413 (414)
180 3dr4_A Putative perosamine syn 99.9 4.1E-25 1.4E-29 212.9 28.5 314 64-433 23-391 (391)
181 3h7f_A Serine hydroxymethyltra 99.9 6.9E-26 2.4E-30 222.1 23.2 331 64-432 46-411 (447)
182 2cjg_A L-lysine-epsilon aminot 99.9 1.6E-26 5.4E-31 226.7 18.3 342 60-432 51-445 (449)
183 2fnu_A Aminotransferase; prote 99.9 6.5E-25 2.2E-29 210.2 28.1 301 76-432 10-369 (375)
184 2c81_A Glutamine-2-deoxy-scyll 99.9 4.7E-25 1.6E-29 214.5 27.0 317 69-432 5-411 (418)
185 1gc0_A Methionine gamma-lyase; 99.9 6.6E-26 2.3E-30 218.9 20.0 287 103-431 63-397 (398)
186 3acz_A Methionine gamma-lyase; 99.9 1.4E-24 4.7E-29 208.9 28.9 280 104-432 58-386 (389)
187 2cb1_A O-acetyl homoserine sul 99.9 2.4E-24 8.3E-29 208.8 30.6 312 74-430 31-411 (412)
188 3qhx_A Cystathionine gamma-syn 99.9 9E-25 3.1E-29 210.3 26.4 283 104-432 65-391 (392)
189 2x3l_A ORN/Lys/Arg decarboxyla 99.9 1.2E-25 4E-30 220.0 20.3 280 103-432 55-350 (446)
190 3uwc_A Nucleotide-sugar aminot 99.9 5.1E-25 1.8E-29 210.9 24.3 312 64-432 7-368 (374)
191 1n8p_A Cystathionine gamma-lya 99.9 2.8E-25 9.5E-30 213.8 22.4 282 104-432 54-392 (393)
192 3cog_A Cystathionine gamma-lya 99.9 2.5E-25 8.5E-30 214.8 21.9 287 99-432 62-399 (403)
193 1qgn_A Protein (cystathionine 99.9 6.6E-25 2.2E-29 213.3 23.3 280 106-432 115-442 (445)
194 2oqx_A Tryptophanase; lyase, p 99.9 7.2E-26 2.4E-30 223.5 15.8 331 64-432 42-439 (467)
195 2dgk_A GAD-beta, GADB, glutama 99.9 3.1E-24 1.1E-28 210.7 24.9 326 76-432 53-431 (452)
196 1wyu_A Glycine dehydrogenase ( 99.9 5.7E-23 2E-27 200.9 29.5 329 65-433 66-438 (438)
197 1o69_A Aminotransferase; struc 99.9 2E-23 6.9E-28 201.3 24.4 301 77-433 10-385 (394)
198 3ke3_A Putative serine-pyruvat 99.9 4.8E-24 1.6E-28 204.5 19.0 302 109-432 35-373 (379)
199 3frk_A QDTB; aminotransferase, 99.9 3.7E-23 1.3E-27 198.0 22.8 303 77-432 15-365 (373)
200 3nyt_A Aminotransferase WBPE; 99.9 1.9E-22 6.6E-27 192.5 27.7 301 77-431 14-360 (367)
201 2yky_A Beta-transaminase; tran 99.9 2.1E-26 7E-31 224.3 0.0 337 52-433 89-458 (465)
202 2fq6_A Cystathionine beta-lyas 99.9 9E-23 3.1E-27 197.0 25.5 286 105-431 82-414 (415)
203 3hbx_A GAD 1, glutamate decarb 99.9 3.9E-23 1.3E-27 205.0 21.8 327 76-432 67-441 (502)
204 3ri6_A O-acetylhomoserine sulf 99.9 9.3E-23 3.2E-27 197.6 23.6 290 104-432 81-429 (430)
205 1ohv_A 4-aminobutyrate aminotr 99.9 1.6E-23 5.4E-28 206.3 18.1 346 58-432 58-468 (472)
206 2z67_A O-phosphoseryl-tRNA(SEC 99.9 2E-23 6.8E-28 205.0 18.5 293 107-433 131-456 (456)
207 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 1.8E-21 6.3E-26 190.1 31.7 316 62-433 30-434 (437)
208 2qma_A Diaminobutyrate-pyruvat 99.9 1.7E-22 5.9E-27 200.6 24.2 332 76-432 111-493 (497)
209 1js3_A DDC;, DOPA decarboxylas 99.9 1.4E-22 4.9E-27 200.7 21.7 326 77-432 86-471 (486)
210 3ju7_A Putative PLP-dependent 99.9 4.3E-22 1.5E-26 190.4 23.9 314 68-432 5-372 (377)
211 3nmy_A Xometc, cystathionine g 99.9 5.4E-22 1.9E-26 190.9 24.7 282 104-432 66-396 (400)
212 2a7v_A Serine hydroxymethyltra 99.9 7.9E-22 2.7E-26 193.1 25.5 341 65-432 56-438 (490)
213 2okj_A Glutamate decarboxylase 99.9 4.8E-22 1.6E-26 197.7 22.7 315 98-432 121-499 (504)
214 3vp6_A Glutamate decarboxylase 99.9 9.1E-22 3.1E-26 195.5 24.0 322 78-432 109-502 (511)
215 2ctz_A O-acetyl-L-homoserine s 99.9 1.4E-21 4.7E-26 189.8 23.0 288 106-433 59-421 (421)
216 3i16_A Aluminum resistance pro 99.9 1.9E-21 6.6E-26 187.4 18.1 257 79-377 46-340 (427)
217 2jis_A Cysteine sulfinic acid 99.9 9.5E-21 3.3E-25 188.8 23.4 335 76-433 119-513 (515)
218 3jzl_A Putative cystathionine 99.9 1.1E-20 3.8E-25 181.5 21.8 257 79-377 32-323 (409)
219 3k40_A Aromatic-L-amino-acid d 99.9 9.1E-21 3.1E-25 186.6 21.7 325 78-432 87-468 (475)
220 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.8E-19 6.2E-24 173.3 29.2 309 65-428 3-389 (390)
221 4e1o_A HDC, histidine decarbox 99.9 1.6E-20 5.4E-25 185.4 20.4 327 77-432 91-475 (481)
222 3ht4_A Aluminum resistance pro 99.9 3.3E-21 1.1E-25 186.8 15.2 256 107-390 67-343 (431)
223 3e77_A Phosphoserine aminotran 99.9 1.6E-19 5.4E-24 170.9 25.5 319 74-432 21-372 (377)
224 3hvy_A Cystathionine beta-lyas 99.8 3.1E-20 1.1E-24 179.0 18.7 255 79-377 47-340 (427)
225 1c4k_A Protein (ornithine deca 99.8 1.6E-19 5.4E-24 184.5 24.7 297 103-432 171-563 (730)
226 2vyc_A Biodegradative arginine 99.8 7.1E-20 2.4E-24 188.8 20.5 288 105-431 205-601 (755)
227 3m5u_A Phosphoserine aminotran 99.8 6.4E-18 2.2E-22 159.3 23.0 321 64-432 5-357 (361)
228 3qm2_A Phosphoserine aminotran 99.8 4.1E-18 1.4E-22 162.1 21.0 316 75-432 36-382 (386)
229 3n75_A LDC, lysine decarboxyla 99.8 5.4E-18 1.9E-22 171.8 17.2 289 103-431 193-556 (715)
230 4atq_A 4-aminobutyrate transam 99.8 7.4E-17 2.5E-21 156.6 24.5 352 53-433 54-453 (456)
231 4ao9_A Beta-phenylalanine amin 99.8 3.4E-17 1.2E-21 158.3 21.1 333 55-432 79-443 (454)
232 4e3q_A Pyruvate transaminase; 99.7 3.4E-16 1.2E-20 152.5 23.8 346 57-432 61-465 (473)
233 3ou5_A Serine hydroxymethyltra 99.6 3.3E-14 1.1E-18 133.5 23.2 348 65-432 56-438 (490)
234 4a0g_A Adenosylmethionine-8-am 99.6 2.1E-15 7.3E-20 156.6 12.2 212 205-433 594-826 (831)
235 3hl2_A O-phosphoseryl-tRNA(SEC 99.4 8.9E-12 3E-16 117.7 20.4 280 123-432 130-458 (501)
236 3bc8_A O-phosphoseryl-tRNA(SEC 99.3 1.1E-10 3.9E-15 111.6 19.5 298 106-432 95-440 (450)
237 4ham_A LMO2241 protein; struct 98.3 7.2E-08 2.5E-12 77.0 -0.6 47 2-48 21-71 (134)
238 2ek5_A Predicted transcription 98.1 1.9E-07 6.6E-12 73.6 -1.1 36 2-37 11-46 (129)
239 3ic7_A Putative transcriptiona 98.1 1.4E-07 4.8E-12 74.2 -2.7 36 2-37 18-53 (126)
240 3neu_A LIN1836 protein; struct 98.0 8.5E-07 2.9E-11 69.7 0.3 37 2-38 20-56 (125)
241 3tqn_A Transcriptional regulat 98.0 7.7E-07 2.6E-11 68.6 -0.6 37 2-38 16-52 (113)
242 3by6_A Predicted transcription 97.9 1.5E-06 5.3E-11 68.2 -0.4 37 2-38 18-54 (126)
243 1hw1_A FADR, fatty acid metabo 97.8 4E-06 1.4E-10 74.1 0.3 37 2-38 14-50 (239)
244 1v4r_A Transcriptional repress 97.7 1E-05 3.5E-10 61.0 1.9 45 3-47 19-67 (102)
245 2di3_A Bacterial regulatory pr 97.7 5.4E-06 1.9E-10 73.2 0.1 37 2-38 11-47 (239)
246 2ra5_A Putative transcriptiona 97.7 2.8E-06 9.5E-11 75.3 -2.0 47 2-48 23-73 (247)
247 3edp_A LIN2111 protein; APC883 97.6 9.8E-06 3.4E-10 71.2 0.1 38 2-39 16-53 (236)
248 2wv0_A YVOA, HTH-type transcri 97.5 1.8E-05 6.2E-10 69.9 0.1 37 2-38 17-53 (243)
249 3eet_A Putative GNTR-family tr 97.4 1.9E-05 6.6E-10 70.9 0.1 47 2-48 36-86 (272)
250 3bwg_A Uncharacterized HTH-typ 97.4 2.3E-05 8E-10 69.0 0.1 37 2-38 12-48 (239)
251 3ihu_A Transcriptional regulat 97.2 3.6E-05 1.2E-09 67.0 -0.5 35 2-37 23-57 (222)
252 3f8m_A GNTR-family protein tra 97.1 7.3E-05 2.5E-09 66.1 -0.0 44 2-47 21-68 (248)
253 2b0l_A GTP-sensing transcripti 97.1 6.6E-05 2.2E-09 56.2 -0.6 33 5-38 30-62 (102)
254 3sxy_A Transcriptional regulat 97.0 9.9E-05 3.4E-09 64.0 -0.5 35 2-37 19-53 (218)
255 2hs5_A Putative transcriptiona 96.7 0.00018 6.2E-09 63.3 -0.7 35 2-37 35-69 (239)
256 3c7j_A Transcriptional regulat 96.4 0.00054 1.9E-08 60.1 0.1 35 2-37 33-67 (237)
257 3e3m_A Transcriptional regulat 93.3 0.05 1.7E-06 50.5 3.5 33 8-40 1-33 (355)
258 2gqq_A Leucine-responsive regu 89.1 0.054 1.8E-06 44.1 -0.9 37 2-40 12-48 (163)
259 3kjx_A Transcriptional regulat 87.8 1.3 4.5E-05 40.4 7.7 39 14-52 5-44 (344)
260 3jvd_A Transcriptional regulat 79.2 1.9 6.3E-05 39.3 4.7 24 17-40 4-27 (333)
261 1q1h_A TFE, transcription fact 71.4 0.43 1.5E-05 35.6 -1.6 34 5-39 20-53 (110)
262 1jko_C HIN recombinase, DNA-in 67.3 1.2 4.1E-05 27.5 0.1 22 20-41 22-43 (52)
263 2jt1_A PEFI protein; solution 66.8 1.3 4.5E-05 30.6 0.3 19 19-37 24-42 (77)
264 3dbi_A Sugar-binding transcrip 65.5 8.2 0.00028 34.8 5.5 23 18-40 2-24 (338)
265 3h5o_A Transcriptional regulat 62.0 10 0.00035 34.3 5.4 24 18-41 3-26 (339)
266 3bil_A Probable LACI-family tr 61.1 10 0.00034 34.5 5.2 25 17-41 6-30 (348)
267 3bzs_A ESCU; auto cleavage pro 60.5 3.3 0.00011 32.1 1.5 25 225-249 81-105 (137)
268 1jhg_A Trp operon repressor; c 59.9 2.4 8.2E-05 30.9 0.6 17 21-37 60-76 (101)
269 2jli_A YSCU, YOP proteins tran 59.8 4.9 0.00017 30.5 2.3 25 225-249 71-95 (123)
270 1tc3_C Protein (TC3 transposas 59.1 2.4 8.2E-05 25.6 0.4 18 21-38 23-40 (51)
271 2hsg_A Glucose-resistance amyl 58.8 22 0.00076 31.8 7.2 31 20-50 3-34 (332)
272 2jlj_A YSCU, YOP proteins tran 57.9 4.8 0.00016 31.5 2.0 24 225-248 80-103 (144)
273 1jye_A Lactose operon represso 57.1 20 0.00069 32.4 6.6 22 19-40 3-24 (349)
274 1pjq_A CYSG, siroheme synthase 54.7 51 0.0018 31.3 9.1 96 124-246 10-106 (457)
275 2x48_A CAG38821; archeal virus 54.2 2.3 7.9E-05 26.8 -0.3 19 21-39 33-51 (55)
276 3dfz_A SIRC, precorrin-2 dehyd 51.7 72 0.0025 26.9 8.6 39 123-161 28-66 (223)
277 1qbj_A Protein (double-strande 51.5 5.2 0.00018 27.8 1.2 24 14-38 23-46 (81)
278 3bzy_B ESCU; auto cleavage pro 51.2 9.1 0.00031 26.7 2.4 25 224-248 26-50 (83)
279 1sfu_A 34L protein; protein/Z- 50.2 1.5 5E-05 30.0 -1.8 24 12-36 23-46 (75)
280 1hjs_A Beta-1,4-galactanase; 4 50.1 20 0.00067 32.5 5.2 39 215-253 50-88 (332)
281 1uxc_A FRUR (1-57), fructose r 48.8 5 0.00017 26.5 0.7 18 20-37 1-18 (65)
282 3h5t_A Transcriptional regulat 48.8 5.9 0.0002 36.4 1.4 27 13-39 3-29 (366)
283 2v7f_A RPS19, RPS19E SSU ribos 47.5 2.4 8.3E-05 33.6 -1.2 27 3-36 58-98 (150)
284 1fob_A Beta-1,4-galactanase; B 47.1 24 0.00082 32.0 5.3 39 215-253 50-88 (334)
285 2l8n_A Transcriptional repress 45.2 19 0.00065 23.8 3.2 21 19-39 9-29 (67)
286 2vt1_B Surface presentation of 44.3 13 0.00045 26.5 2.4 25 224-248 26-50 (93)
287 2yl5_A Beta-N-acetylhexosamini 43.9 18 0.00062 34.3 4.0 27 216-242 86-112 (442)
288 3t7y_A YOP proteins translocat 43.4 13 0.00043 26.9 2.1 25 224-248 41-65 (97)
289 2o20_A Catabolite control prot 42.4 20 0.00067 32.2 3.9 24 18-41 4-27 (332)
290 3c01_E Surface presentation of 41.9 14 0.00047 26.7 2.1 25 224-248 26-50 (98)
291 1rzs_A Antirepressor, regulato 41.4 7.3 0.00025 25.2 0.6 17 21-37 12-28 (61)
292 1qpz_A PURA, protein (purine n 40.2 30 0.001 31.1 4.8 30 20-49 1-31 (340)
293 1kyq_A Met8P, siroheme biosynt 39.8 43 0.0015 29.3 5.5 37 123-159 10-46 (274)
294 2yl6_A Beta-N-acetylhexosamini 39.6 19 0.00065 34.1 3.4 27 216-242 83-109 (434)
295 1bqc_A Protein (beta-mannanase 38.8 71 0.0024 28.1 7.0 23 224-246 64-86 (302)
296 2e8y_A AMYX protein, pullulana 37.8 20 0.00067 36.5 3.4 28 224-251 315-342 (718)
297 4gqr_A Pancreatic alpha-amylas 36.3 25 0.00087 33.5 3.8 29 223-251 75-103 (496)
298 2hin_A GP39, repressor protein 36.2 8.4 0.00029 26.0 0.2 17 21-37 12-28 (71)
299 1g2h_A Transcriptional regulat 35.9 5.6 0.00019 25.8 -0.7 22 21-42 35-56 (61)
300 1j9i_A GPNU1 DBD;, terminase s 35.1 9.9 0.00034 25.2 0.5 20 21-40 4-23 (68)
301 1z4h_A TORI, TOR inhibition pr 34.4 8.2 0.00028 25.4 -0.0 23 17-39 8-30 (66)
302 2ya0_A Putative alkaline amylo 34.4 27 0.00093 35.4 3.8 27 224-250 254-280 (714)
303 1g94_A Alpha-amylase; beta-alp 32.1 36 0.0012 32.2 4.0 28 224-251 64-91 (448)
304 3b1s_B Flagellar biosynthetic 37.9 9.9 0.00034 26.8 0.0 23 227-249 29-51 (87)
305 1ur4_A Galactanase; hydrolase, 31.5 71 0.0024 29.7 5.8 32 222-253 86-117 (399)
306 3k2z_A LEXA repressor; winged 31.5 7.1 0.00024 32.4 -0.9 33 16-48 21-57 (196)
307 1ht6_A AMY1, alpha-amylase iso 30.7 44 0.0015 31.0 4.4 29 223-251 67-95 (405)
308 1lwj_A 4-alpha-glucanotransfer 30.3 46 0.0016 31.3 4.5 27 224-250 69-95 (441)
309 1mxg_A Alpha amylase; hyperthe 29.0 48 0.0017 31.2 4.3 29 223-251 85-113 (435)
310 3rcn_A Beta-N-acetylhexosamini 29.0 41 0.0014 32.8 3.8 27 216-242 215-241 (543)
311 1gcy_A Glucan 1,4-alpha-maltot 28.8 51 0.0018 31.9 4.6 29 224-252 92-120 (527)
312 2elh_A CG11849-PA, LD40883P; s 28.3 15 0.0005 25.7 0.4 18 21-38 40-57 (87)
313 1qgp_A Protein (double strande 27.6 16 0.00055 24.9 0.5 22 16-38 29-50 (77)
314 2ya1_A Putative alkaline amylo 27.6 38 0.0013 35.9 3.6 27 224-250 561-587 (1014)
315 1neq_A DNA-binding protein NER 27.5 17 0.00057 24.6 0.6 20 20-39 23-42 (74)
316 3fmy_A HTH-type transcriptiona 27.4 20 0.00068 23.9 1.0 16 21-36 26-41 (73)
317 2aaa_A Alpha-amylase; glycosid 27.4 54 0.0018 31.3 4.4 29 224-252 97-125 (484)
318 1umq_A Photosynthetic apparatu 27.3 9 0.00031 26.6 -0.8 21 22-42 57-77 (81)
319 2z1k_A (NEO)pullulanase; hydro 27.2 53 0.0018 31.2 4.3 27 224-250 96-122 (475)
320 1yht_A DSPB; beta barrel, hydr 26.9 43 0.0015 30.8 3.4 24 219-242 89-112 (367)
321 3ctp_A Periplasmic binding pro 26.8 13 0.00046 33.3 0.0 24 18-41 1-24 (330)
322 1wza_A Alpha-amylase A; hydrol 26.8 58 0.002 31.1 4.5 27 224-250 81-107 (488)
323 2heo_A Z-DNA binding protein 1 26.6 10 0.00036 25.0 -0.6 19 21-39 27-45 (67)
324 1ud2_A Amylase, alpha-amylase; 26.5 47 0.0016 31.7 3.8 27 224-250 80-106 (480)
325 3fkr_A L-2-keto-3-deoxyarabona 26.4 64 0.0022 28.8 4.4 107 107-247 59-175 (309)
326 2guy_A Alpha-amylase A; (beta- 26.4 53 0.0018 31.3 4.1 28 224-251 97-124 (478)
327 3bh4_A Alpha-amylase; calcium, 26.1 48 0.0016 31.7 3.8 27 224-250 78-104 (483)
328 2gjx_A Beta-hexosaminidase alp 26.0 53 0.0018 31.7 4.0 56 184-242 177-232 (507)
329 1jae_A Alpha-amylase; glycosid 26.0 50 0.0017 31.5 3.9 28 224-251 74-101 (471)
330 1j0h_A Neopullulanase; beta-al 25.8 57 0.0019 32.1 4.3 28 224-251 222-249 (588)
331 4aie_A Glucan 1,6-alpha-glucos 25.7 57 0.0019 31.6 4.3 33 212-249 72-104 (549)
332 1hvx_A Alpha-amylase; hydrolas 25.7 49 0.0017 32.0 3.8 29 223-251 80-108 (515)
333 2p5k_A Arginine repressor; DNA 25.7 12 0.00042 24.0 -0.4 24 18-41 18-46 (64)
334 1wpc_A Glucan 1,4-alpha-maltoh 25.5 50 0.0017 31.6 3.8 27 224-250 82-108 (485)
335 2ao9_A Phage protein; structur 25.4 16 0.00055 28.9 0.2 18 21-38 50-67 (155)
336 1ua7_A Alpha-amylase; beta-alp 25.3 49 0.0017 31.0 3.6 30 223-252 73-102 (422)
337 3kkc_A TETR family transcripti 25.3 15 0.00051 29.0 -0.0 39 4-42 17-55 (177)
338 2q24_A Putative TETR family tr 25.3 7.9 0.00027 31.4 -1.7 37 4-41 20-56 (194)
339 3a5f_A Dihydrodipicolinate syn 24.8 60 0.0021 28.6 3.9 106 107-245 52-163 (291)
340 3jsj_A Putative TETR-family tr 24.6 8.3 0.00028 31.1 -1.7 38 3-41 13-50 (190)
341 1wzl_A Alpha-amylase II; pullu 24.4 66 0.0022 31.6 4.5 28 224-251 219-246 (585)
342 2ojp_A DHDPS, dihydrodipicolin 24.4 59 0.002 28.7 3.8 96 107-232 52-153 (292)
343 2htj_A P fimbrial regulatory p 24.4 22 0.00074 24.3 0.7 20 20-39 15-34 (81)
344 2vn2_A DNAD, chromosome replic 24.2 15 0.00052 27.9 -0.1 33 15-47 47-83 (128)
345 2dh2_A 4F2 cell-surface antige 24.2 66 0.0022 30.1 4.3 28 224-251 81-108 (424)
346 2ki0_A DS119; beta-alpha-beta, 23.9 51 0.0017 17.7 1.9 19 223-241 13-31 (36)
347 1ntc_A Protein (nitrogen regul 23.9 9.6 0.00033 27.0 -1.3 20 22-41 67-86 (91)
348 2whl_A Beta-mannanase, baman5; 23.8 55 0.0019 28.7 3.5 25 223-247 62-86 (294)
349 2fd5_A Transcriptional regulat 23.5 18 0.00063 28.7 0.2 39 4-42 12-50 (180)
350 2wc7_A Alpha amylase, catalyti 23.4 55 0.0019 31.3 3.6 27 224-250 102-128 (488)
351 2xi8_A Putative transcription 23.3 22 0.00076 22.6 0.6 17 21-37 16-32 (66)
352 3b0z_B Flagellar biosynthetic 29.0 17 0.00059 27.0 0.0 23 227-249 29-51 (114)
353 3dhu_A Alpha-amylase; structur 23.1 65 0.0022 30.3 4.1 28 223-250 82-109 (449)
354 2hmc_A AGR_L_411P, dihydrodipi 23.0 65 0.0022 29.2 3.8 103 107-246 77-188 (344)
355 2jn6_A Protein CGL2762, transp 23.0 21 0.00072 25.4 0.4 17 21-37 25-41 (97)
356 4hku_A LMO2814 protein, TETR t 23.0 17 0.00058 29.0 -0.1 37 6-42 14-50 (178)
357 3e7l_A Transcriptional regulat 22.9 14 0.00048 24.0 -0.5 20 22-41 35-54 (63)
358 3omt_A Uncharacterized protein 22.8 23 0.00078 23.3 0.6 16 21-36 23-38 (73)
359 4df3_A Fibrillarin-like rRNA/T 22.7 2.1E+02 0.0072 24.1 6.8 61 110-170 58-123 (233)
360 1zja_A Trehalulose synthase; s 22.5 72 0.0025 31.1 4.3 27 224-250 79-105 (557)
361 2iu5_A DHAS, YCEG, HTH-type dh 22.5 19 0.00066 29.0 0.2 35 8-42 22-56 (195)
362 2jpc_A SSRB; DNA binding prote 22.5 21 0.00073 22.5 0.4 18 21-38 15-32 (61)
363 3t76_A VANU, transcriptional r 22.2 24 0.00082 24.8 0.6 16 21-36 39-54 (88)
364 1jak_A Beta-N-acetylhexosamini 22.2 69 0.0024 30.9 4.0 57 184-242 189-248 (512)
365 2o3f_A Putative HTH-type trans 22.1 11 0.00039 27.9 -1.2 20 19-38 39-58 (111)
366 3pzt_A Endoglucanase; alpha/be 22.1 59 0.002 29.2 3.3 23 224-246 104-126 (327)
367 2k9q_A Uncharacterized protein 22.0 24 0.00083 23.5 0.6 16 21-36 17-32 (77)
368 1oyi_A Double-stranded RNA-bin 21.9 14 0.00048 25.7 -0.7 20 20-39 31-50 (82)
369 7a3h_A Endoglucanase; hydrolas 21.9 60 0.002 28.7 3.3 25 224-248 79-103 (303)
370 3bqz_B HTH-type transcriptiona 21.8 14 0.00048 29.7 -0.9 40 2-41 5-44 (194)
371 3faw_A Reticulocyte binding pr 21.6 69 0.0024 33.3 4.1 27 224-250 369-395 (877)
372 3bd1_A CRO protein; transcript 21.6 25 0.00086 23.7 0.6 16 21-36 13-28 (79)
373 1m53_A Isomaltulose synthase; 21.6 77 0.0026 31.0 4.3 28 223-250 91-118 (570)
374 1m7x_A 1,4-alpha-glucan branch 21.6 87 0.003 31.0 4.7 30 223-252 203-232 (617)
375 1ea9_C Cyclomaltodextrinase; h 21.3 89 0.003 30.7 4.7 29 223-251 217-245 (583)
376 1zug_A Phage 434 CRO protein; 21.3 26 0.00088 22.7 0.6 16 21-36 18-33 (71)
377 3jug_A Beta-mannanase; TIM-bar 21.3 63 0.0021 29.4 3.3 26 223-248 85-110 (345)
378 3edf_A FSPCMD, cyclomaltodextr 21.2 79 0.0027 31.2 4.3 28 223-250 197-224 (601)
379 3m07_A Putative alpha amylase; 20.9 1E+02 0.0034 30.6 5.0 31 223-253 201-231 (618)
380 4aef_A Neopullulanase (alpha-a 20.8 80 0.0027 31.5 4.3 27 223-249 284-310 (645)
381 1tvn_A Cellulase, endoglucanas 20.8 67 0.0023 28.1 3.4 24 224-247 78-101 (293)
382 2glo_A Brinker CG9653-PA; prot 20.8 26 0.00089 22.2 0.5 16 22-37 28-43 (59)
383 1i1g_A Transcriptional regulat 20.7 17 0.0006 27.8 -0.5 27 12-39 12-38 (141)
384 1uok_A Oligo-1,6-glucosidase; 20.6 83 0.0028 30.7 4.3 27 223-249 77-103 (558)
385 3vgf_A Malto-oligosyltrehalose 20.5 73 0.0025 31.1 3.9 30 224-253 167-196 (558)
386 3iwf_A Transcription regulator 20.5 13 0.00044 27.4 -1.2 21 19-39 35-55 (107)
387 3qqa_A CMER; alpha-helical, he 20.5 24 0.00083 28.8 0.4 39 3-41 23-61 (216)
388 2bhu_A Maltooligosyltrehalose 20.4 96 0.0033 30.6 4.7 31 223-253 191-221 (602)
389 3kz3_A Repressor protein CI; f 20.4 27 0.00094 23.5 0.6 16 21-36 27-42 (80)
390 2iai_A Putative transcriptiona 20.4 26 0.0009 29.2 0.6 40 2-41 33-72 (230)
391 1g01_A Endoglucanase; alpha/be 20.3 67 0.0023 29.3 3.4 24 224-247 89-112 (364)
392 2r1j_L Repressor protein C2; p 20.2 28 0.00096 22.2 0.6 16 21-36 20-35 (68)
393 3aj7_A Oligo-1,6-glucosidase; 20.1 86 0.003 30.8 4.3 28 223-250 86-113 (589)
No 1
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=100.00 E-value=9.6e-56 Score=433.20 Aligned_cols=395 Identities=84% Similarity=1.390 Sum_probs=339.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHH
Q 045431 37 LGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIAS 116 (433)
Q Consensus 37 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~ 116 (433)
+.+++..|.+..+..+......++++.++|+|+.|+++++.|+.+.+++.+++.+..+..+...|++..|..+||+++++
T Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~ 109 (432)
T 3ei9_A 30 MSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAK 109 (432)
T ss_dssp HHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHH
T ss_pred HHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHH
Confidence 44556568888887777777777777789999999999999999999999999876544556789888899999999999
Q ss_pred HHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCc
Q 045431 117 TFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF 196 (433)
Q Consensus 117 ~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (433)
|+.+++++++++|++|+|+++++.++..++++||.|++++|+|+++...++..|..+++...+..+.+++.++.+.++++
T Consensus 110 ~~~~~~~~~~~~i~~t~G~~~al~~l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (432)
T 3ei9_A 110 TFYGGLGIGDDDVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGF 189 (432)
T ss_dssp HHHTTTTCCGGGEEEESCHHHHHHHHHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTT
T ss_pred HHHccCCCCcceEEECCChHHHHHHHHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCC
Confidence 99888888999999999999999988888899999999999999999999999976655444444457888888876677
Q ss_pred ccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc
Q 045431 197 FPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 197 ~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s 276 (433)
..++++.+++++|++++||||||.+++.+++++|+++|++||++||+||+|+++.+++.+.++..+++..+++++++|||
T Consensus 190 ~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 269 (432)
T 3ei9_A 190 FPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFS 269 (432)
T ss_dssp SCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESH
T ss_pred cCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecch
Confidence 77777777899999999999999999999999999999999999999999999888766666777655567889999999
Q ss_pred ccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|++|++|+|+||++++++++......+.+.+.+.......+++.++|.++.+++.+.+.+++++++++++++++.+.+.|
T Consensus 270 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 349 (432)
T 3ei9_A 270 NYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTF 349 (432)
T ss_dssp HHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999884333333346676666666677899999999999985555778999999999999999999
Q ss_pred hhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHh
Q 045431 357 NSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHL 431 (433)
Q Consensus 357 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~ 431 (433)
+++|+.+..+.+++|+|+++++.+..++...+++++||.+.||..|++.+++++||+++.+++++++++++|++-
T Consensus 350 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 350 TSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQL 424 (432)
T ss_dssp HHTTCCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred HHCCceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 999998888778999999999767788888888888999999999987778999999988999999999999874
No 2
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=3.3e-54 Score=424.36 Aligned_cols=412 Identities=64% Similarity=1.122 Sum_probs=338.0
Q ss_pred ChhhHHHHHhccccccc---cccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCC
Q 045431 20 PQEEKIAYKTKVSRNGN---LGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQE 96 (433)
Q Consensus 20 Ps~r~la~~~~vs~~t~---~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~ 96 (433)
...|+++..+++++.+. +++++..|.+..+..+.......+++.++|+|+.|+++++.|+.+.+++.+++.+.....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~ 102 (449)
T 3qgu_A 23 AVVQAVAQRAGTIDVQRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATRE 102 (449)
T ss_dssp ----------CCCCCCCCHHHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSC
T ss_pred cccchhhccccccchhhhHHHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhcccc
Confidence 34788899999988774 455566677777777766666667788899999999999999999999999988654334
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCccccc
Q 045431 97 GYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ 176 (433)
Q Consensus 97 ~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~ 176 (433)
....|++..|.++||+++++|+.+++++++++|++|+|+++++.++..++++||+|++++|+|+++...++..|..+++.
T Consensus 103 ~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~ 182 (449)
T 3qgu_A 103 GYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHN 182 (449)
T ss_dssp CCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHHHHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBC
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHHHHHhCCCCEEEEcCCCChhHHHHHHHcCCccccc
Confidence 55689888999999999999987666778899999999999999887788999999999999999999999999654321
Q ss_pred ccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-
Q 045431 177 KDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN- 255 (433)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~- 255 (433)
...|.+++.++.+.++++..++++.+++++|++++||||||.+++.+++++|+++|++||++||+||+|+++.+++.
T Consensus 183 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~ 260 (449)
T 3qgu_A 183 --GTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDC 260 (449)
T ss_dssp --SSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTS
T ss_pred --ccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCC
Confidence 12233488899887777777776667899999999999999999999999999999999999999999999888754
Q ss_pred CCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
+.++..++...+++++++||||++|++|+|+||++++++++......+...+.........+++.++|.++.+++.+...
T Consensus 261 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 340 (449)
T 3qgu_A 261 PKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGL 340 (449)
T ss_dssp CSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHH
T ss_pred CCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCH
Confidence 55676765546788999999999999999999999999886321222223555556666667899999999999986455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF 415 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~ 415 (433)
+++++++++++++++.+.+.|+++|+.+..+.+++|+|+.+++.+..++...+++++||.+.||..|++.+++++||+++
T Consensus 341 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~ 420 (449)
T 3qgu_A 341 KEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAF 420 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEec
Confidence 77899999999999999999999999988888899999999866778888888887899999999998777899999988
Q ss_pred cChhHHHHHHHHHHHhhC
Q 045431 416 GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++++++++|+++++
T Consensus 421 ~~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 421 GSRENILEAVRRFKEAYG 438 (449)
T ss_dssp SCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 899999999999998864
No 3
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=5.7e-53 Score=413.27 Aligned_cols=382 Identities=15% Similarity=0.165 Sum_probs=300.1
Q ss_pred ccCCChhhHHHHHhccccccc---cccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCC-CCCChHHH--HHHHHHHH
Q 045431 16 CVAAPQEEKIAYKTKVSRNGN---LGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDT-TEPIPEVI--TSALAKRS 89 (433)
Q Consensus 16 g~~LPs~r~la~~~~vs~~t~---~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~--~~a~~~~~ 89 (433)
|+||||+|+||++|+||++|+ |+++..||+.......... . . .+++|+|+.|.+ +++.|+.+ .+++.+.+
T Consensus 1 g~~lps~r~la~~l~vs~~tv~~a~~~l~~~~~~~~~~~~~~~-~-~--~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~ 76 (430)
T 2x5f_A 1 GAMNPLAQSLNEQLQQSNATAFAMLSDLGQNMFYPKGILSQSA-E-A--KSTTYNATIGMATNKDGKMFASSLDAMFNDL 76 (430)
T ss_dssp --CCHHHHHHHHHHHHHCHHHHHHCCHHHHHCCCCCHHHHHHH-H-T--TTCSEECCCSSCEETTEECCCHHHHTTBSSC
T ss_pred CCCChhhhhHHHHHHhhhhHHHHHHhhhhhhccCchHHHHHHH-h-c--CCCcEEeeeeeccCCCCchhhHHHHHHHHhc
Confidence 789999999999999999996 5555456654311111111 1 1 346899999999 77766665 56555544
Q ss_pred hhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCCCc---EEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhh
Q 045431 90 YALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLGIEEGD---IFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVD 164 (433)
Q Consensus 90 ~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~~~~~~---i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~ 164 (433)
.. .....|++..|..+||+++|+++.+ ++++++++ |++|+|+++++.+ +..++++||+|++++|+|+++..
T Consensus 77 ~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~ 152 (430)
T 2x5f_A 77 TP----DEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL 152 (430)
T ss_dssp CG----GGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH
T ss_pred Cc----ccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH
Confidence 32 1356898888999999999999975 55678889 9999999999997 57778999999999999999998
Q ss_pred hHHH-hCCcccccccccccceEEEeecCccCCcccCCCC-----CC---CccEEEEcCCCCccccCCCHHHHHHHHHHHH
Q 045431 165 SSVI-MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VA---RTDIIFFCSPNNPTGAAATREQLTRLVQFAK 235 (433)
Q Consensus 165 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~ 235 (433)
.++. .| .+++.++.+.++ +..+++. .. +++++++++||||||.+++.+++++|+++|+
T Consensus 153 ~~~~~~g------------~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~ 219 (430)
T 2x5f_A 153 VFNTRNG------------ANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIK 219 (430)
T ss_dssp HHTTTTC------------CEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHhcC------------CeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHH
Confidence 8887 77 477788876532 2233221 12 7889999999999999999999999999999
Q ss_pred H-----cCCEEEEeccccccccCCC-CCccc-ccCCCCcc---eEEEecccccccccccceeeeec---cccccccCCcc
Q 045431 236 D-----NGSIIVYDSAYALYISDDN-PRSIF-EIPGAKEV---AIETSSFSKYAGFTGVRLGWTVI---PKELLFSDGFP 302 (433)
Q Consensus 236 ~-----~~~~li~De~~~~~~~~~~-~~~~~-~~~~~~~~---vi~i~S~sK~~~~~G~r~G~l~~---~~~~~~~~~~~ 302 (433)
+ ||++||+||+|+++.+++. +.++. .+++..++ +++++||||.+|++|+|+||+++ +++++
T Consensus 220 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~------ 293 (430)
T 2x5f_A 220 ALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTK------ 293 (430)
T ss_dssp HHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHH------
T ss_pred hhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHH------
Confidence 9 9999999999999887754 34554 55443567 89999999999989999999999 87774
Q ss_pred hhHHHHHHHhh----ccCCCcHHHHHHHHHhcC-cCCh-hHHHHHHHHHHHHHHHHHHHHh----hcCCeeecCCCccEE
Q 045431 303 VAKDFNRIVCT----CFNGASNISQAGGLACLS-PEGF-KAVHEVIGFYKENTDIIVETFN----SLGFKVYGGKNAPYV 372 (433)
Q Consensus 303 ~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~-~~~~-~~~~~~~~~~~~~~~~l~~~l~----~~g~~~~~~~~g~~~ 372 (433)
+.+...... ...+++.+.|.++.++++ +..+ +++++++++++++++.+.+.|+ +.|+.+..+.+|+|+
T Consensus 294 --~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~ 371 (430)
T 2x5f_A 294 --EVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFM 371 (430)
T ss_dssp --HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSEE
T ss_pred --HHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEEE
Confidence 555554443 456689999999999997 6522 4456699999999999999998 668888888888999
Q ss_pred EEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~l~~l~~~l 432 (433)
|+++++.+..++...+++++||.+.|| +++++||++. .+++++++++++|++++
T Consensus 372 ~~~~~~~~~~~~~~~l~~~~gi~v~~g------~~~~iRis~~~~~~e~i~~~~~~l~~~l 426 (430)
T 2x5f_A 372 AIKVHDVDPEALRKHLIDKYSIGVIAL------NATDIRIAFSCVEKDDIPHVFDSIAKAI 426 (430)
T ss_dssp EEEESSSCHHHHHHHHHHHHCEECEEC------SSSEEEEEGGGSCGGGHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEecC------CCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence 999985567778888877469999997 3578999987 78999999999999875
No 4
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=100.00 E-value=1.3e-50 Score=392.69 Aligned_cols=383 Identities=43% Similarity=0.772 Sum_probs=302.0
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHH
Q 045431 34 NGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAA 113 (433)
Q Consensus 34 ~t~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 113 (433)
++.+.++...|.+..+.++......++++.++|+|+.|++++++|+.+.+++.+.+...........|++..|.++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ 83 (400)
T 3asa_A 4 NPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQK 83 (400)
T ss_dssp CHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHH
T ss_pred chhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHH
Confidence 33344444446666666665555555667789999999998888999999999988764322245679878899999999
Q ss_pred HHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccce-EEEeecCc
Q 045431 114 IASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGK-IEYMRCTA 192 (433)
Q Consensus 114 la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~ 192 (433)
+++++..++ +++++|++|+|+++++.++..++++||+|++++|+|+++...++..|. + ++.++.++
T Consensus 84 la~~l~~g~-~~~~~v~~~~G~~~al~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~------------~~~~~~~~~~ 150 (400)
T 3asa_A 84 LSEDFYRGF-VDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGA------------KEIIALPCLQ 150 (400)
T ss_dssp HHHTTSTTS-SCGGGEEEESCHHHHHHHHHHHHCSSCEEEEEESCCHHHHHHHHHTTC------------SEEEEEECCG
T ss_pred HHHHHHcCC-CCHHHEEEccChHHHHHHHHHHcCCCCEEEECCCCcHHHHHHHHHcCC------------cceEecccch
Confidence 999964222 788999999999999998767789999999999999999988888883 5 77888876
Q ss_pred cCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEE
Q 045431 193 ENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIE 271 (433)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~ 271 (433)
++++..++++.+++++|++++||||||.++|.+++++|+++|+++|++||+||+|+++.+++. +.++..++...+++++
T Consensus 151 ~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (400)
T 3asa_A 151 ENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIE 230 (400)
T ss_dssp GGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEE
T ss_pred hcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEE
Confidence 556666665546789999999999999999999999999999999999999999998877654 4556666433467899
Q ss_pred EecccccccccccceeeeeccccccccCCcchhHHHHH-HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR-IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
++||||++|++|+|+||+++++++....... ...+.. .......+.+.++|.++.+++++. +++++++.++++++
T Consensus 231 ~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~ 306 (400)
T 3asa_A 231 INSFSKPLGFAGIRLGWTVIPQELTYADGHF-VIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSD 306 (400)
T ss_dssp EEECCGGGTTTTCCCEEEECCTTCBCTTSCB-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHH
T ss_pred EecchhhcCCcchheeEEeeChhhccchhhh-HHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHH
Confidence 9999999999999999999998872100000 022222 222333458899999988888754 45788899999999
Q ss_pred HHHHHHhhcCCeeecCCCccEEEEE-CC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHH
Q 045431 351 IIVETFNSLGFKVYGGKNAPYVWVQ-FP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRF 428 (433)
Q Consensus 351 ~l~~~l~~~g~~~~~~~~g~~~~~~-~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l 428 (433)
.+.+.|++.|+.+..+.+|+|+|++ ++ +.+..++...+++++||.+.||..|+..+++++||+++.+++++++++++|
T Consensus 307 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l 386 (400)
T 3asa_A 307 LLRKALLATGFEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERL 386 (400)
T ss_dssp HHHHHHHHTTCEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHH
Confidence 9999999989988877789999999 87 345556777887777999999998876567899999878999999999999
Q ss_pred HHhhC
Q 045431 429 KHLYK 433 (433)
Q Consensus 429 ~~~l~ 433 (433)
+++++
T Consensus 387 ~~~~~ 391 (400)
T 3asa_A 387 QMAPA 391 (400)
T ss_dssp HC---
T ss_pred HHHHH
Confidence 88763
No 5
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=5e-50 Score=386.63 Aligned_cols=342 Identities=24% Similarity=0.371 Sum_probs=287.6
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|+|+++.|+.+.+++.+.+.. ....|++..|.++||+++++|+.+ ++.+++++|++|+|+++++
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al 104 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQ-----GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHH
Confidence 456899999999888889999999888753 235788788999999999999975 5567889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC--CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST--VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~i~l~~ 213 (433)
.+ +..++++||+|++++|+|+.+...++..| .+++.++.++++++..++ ++ .+++++|++++
T Consensus 105 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 172 (385)
T 1b5p_A 105 FNLFQAILDPGDEVIVLSPYWVSYPEMVRFAG------------GVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNS 172 (385)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEES
T ss_pred HHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeC
Confidence 97 57788999999999999999999999888 478888887533444332 22 25688999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.++.+++. +++++++||||++|++|+|+||+++++
T Consensus 173 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~i~~~s~SK~~~~~G~RiG~~~~~~ 250 (385)
T 1b5p_A 173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP--EHTLTVNGAAKAFAMTGWRIGYACGPK 250 (385)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT--TTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC--CCEEEEEechhhcCCcccceEEEEeCH
Confidence 999999999999999999999999999999999999887654445666643 689999999999999999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC--ChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE--GFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++ +.+.........+++.+.|.++.++++.. +.+++++.+++++++++.+.+.|+++|+.+..+.+++|
T Consensus 251 ~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 322 (385)
T 1b5p_A 251 EVI--------KAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFY 322 (385)
T ss_dssp HHH--------HHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTE
T ss_pred HHH--------HHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEE
Confidence 874 66666655555668899999988888641 24678899999999999999999988888888888999
Q ss_pred EEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|+.++ +.+..++...++ ++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 323 ~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 323 VLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp EEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred EEEecCCCCCCHHHHHHHHH-HCCeEEecccccCC--CCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 999996 446677777777 66999999999865 679999998899999999999988763
No 6
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=1.1e-47 Score=371.05 Aligned_cols=341 Identities=25% Similarity=0.400 Sum_probs=286.1
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
+++++|+|+.|+++++.|+.+.+++.+.+.+ ....|++..|..++|+++++++.+ ++.+++++|++|+|++++
T Consensus 29 ~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~a 103 (391)
T 3h14_A 29 AGRRIIHMEVGQPGTGAPRGAVEALAKSLET-----DALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGG 103 (391)
T ss_dssp TTCCCEECCCSSCSSCSCHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHH
Confidence 4567999999999998899999999998863 346788888999999999999975 666889999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CCCCCccEEEEcCC
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---STVARTDIIFFCSP 214 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~l~~p 214 (433)
+.+ +..++++||+|++++|+|+++...++..| .+++.++.+.++++..++ ++. ++++|++++|
T Consensus 104 l~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~-~~~~v~i~~p 170 (391)
T 3h14_A 104 FLLAFTALFDSGDRVGIGAPGYPSYRQILRALG------------LVPVDLPTAPENRLQPVPADFAGL-DLAGLMVASP 170 (391)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEECCGGGTTSCCHHHHTTS-CCSEEEEESS
T ss_pred HHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEeecCcccCCCCCHHHHHhc-CCeEEEECCC
Confidence 997 57788999999999999999999999988 488889988765554443 333 7899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||||.+++.+++++|+++|++||+++|+||+|+++.+++.+.+...+ .+++++++|+||.+|++|+|+||++++++
T Consensus 171 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 247 (391)
T 3h14_A 171 ANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL---TDECYVINSFSKYFSMTGWRVGWMVVPED 247 (391)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT---CSSSEEEEESSSTTCCTTSCCEEEECCGG
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc---CCCEEEEEechhccCCccceeEEEEeCHH
Confidence 999999999999999999999999999999999998887655555444 45789999999999999999999999988
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee-ecCCCccEEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV-YGGKNAPYVW 373 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~g~~~~ 373 (433)
++ +.+.........+++.+.|.++.++++ ..+++++.+++++++++.+.+.|+++++.. ..+.+++++|
T Consensus 248 ~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 317 (391)
T 3h14_A 248 QV--------RVVERIAQNMFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVY 317 (391)
T ss_dssp GH--------HHHHHHHHHTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEE
T ss_pred HH--------HHHHHHHhhhccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEE
Confidence 85 667766666667789999998888887 457889999999999999999999987654 5677789999
Q ss_pred EECC--CCChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 374 VQFP--GRSSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 374 ~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+.++ +.+..++...+++++||.+.||..|+. .+++++||++..+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~ 379 (391)
T 3h14_A 318 ADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFM 379 (391)
T ss_dssp EECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 9997 456778888888777999999999976 4578999999889999999999999875
No 7
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-48 Score=383.10 Aligned_cols=346 Identities=20% Similarity=0.300 Sum_probs=286.0
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
+.++|+|+.|.|++++|+.+.+++.+++.. .....|++..|.++||+++++++.+ +.++++++|++|+|+++++
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDI----PMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTS----GGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhC----cCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 457999999999988899999999998864 1346798888999999999999976 5556788999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC----------CcccCC---CC--C
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN----------GFFPDL---ST--V 203 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~--~ 203 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.++++ ++..++ ++ .
T Consensus 132 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 199 (447)
T 3b46_A 132 LSCLMGLLNAGDEVIVFEPFFDQYIPNIELCG------------GKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT 199 (447)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred HHHHHHHcCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence 97 67788999999999999999999999888 467777765431 222332 22 2
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccccc-CCCCcceEEEeccccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEI-PGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~-~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++++|++++||||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++.++ ++..+++++++|+||++|++
T Consensus 200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 279 (447)
T 3b46_A 200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT 279 (447)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc
Confidence 57899999999999999999999999999999999999999999998887644556555 22246789999999999999
Q ss_pred ccceeeeec-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-hhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 283 GVRLGWTVI-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-FKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 283 G~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
|+|+||+++ +++++ +.+.........+.+.+.|.++.++|+... ..++++++++++++++.+.+.|+++|
T Consensus 280 G~riG~~~~~~~~l~--------~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 351 (447)
T 3b46_A 280 GWRIGWVLSLNAELL--------SYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELG 351 (447)
T ss_dssp TSCCEEEECSCHHHH--------HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhEEEEeCCHHHH--------HHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999 87775 666655555556678999998888887432 25688999999999999999999989
Q ss_pred CeeecCCCccEEEEECCCC----------------ChHHHHHHHHHcCCeEecCCCCCCCC-----CCCeEEEeeccChh
Q 045431 361 FKVYGGKNAPYVWVQFPGR----------------SSWDVFSEILEKTHVVTTPGSGFGPG-----GEGFIRVSAFGHRG 419 (433)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~----------------~~~~~~~~l~~~~gi~v~~g~~f~~~-----~~~~iRi~~~~~~~ 419 (433)
+.+..+.+|+|+|++++.. +..++...+++++||.+.||..|+.. +++++||++..+++
T Consensus 352 ~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e 431 (447)
T 3b46_A 352 LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDA 431 (447)
T ss_dssp CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHH
T ss_pred CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHH
Confidence 9888888899999999742 34467777777779999999988643 26899999988999
Q ss_pred HHHHHHHHHHHh
Q 045431 420 NVLEACKRFKHL 431 (433)
Q Consensus 420 ~l~~~l~~l~~~ 431 (433)
++++++++|+++
T Consensus 432 ~l~~~~~~l~~~ 443 (447)
T 3b46_A 432 YLENAVERLKLL 443 (447)
T ss_dssp HHHHHHHHGGGG
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 8
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=7.1e-48 Score=373.89 Aligned_cols=347 Identities=24% Similarity=0.380 Sum_probs=289.7
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~ 137 (433)
++.++|+|+.|.++++.++.+.+++.+.+... ....|++..|..+||+++++++.+ +..+++ ++|++|+|+++
T Consensus 45 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 45 GPLPLINMAVGIPDGPTPQGIIDHFQKALTIP----ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CSSCCEECCCCSCSSCCCHHHHHHHHHHTTCH----HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred CCCCEEecCCcCCCCCCCHHHHHHHHHHHhCC----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 34568999999998888899999999987531 134787778999999999999976 554565 89999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----CCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l 211 (433)
++.+ +..++++||+|++++|+|+++...++..| .+++.++.+. +++..+++.. +++++|++
T Consensus 121 al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~l 187 (404)
T 2o1b_A 121 GLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLAD------------GKPVPLNLEP-PHYLPDWSKVDSQIIDKTKLIYL 187 (404)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTT------------CEEEEEECCT-TTCCCCGGGSCHHHHHHEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCC------------CEEEEeccCc-ccCcCCHHHHHHhhccCceEEEE
Confidence 9997 57778999999999999999999998888 4778888765 3443443332 46889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
++||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.++..+++..+++++++||||++|++|+|+||+++
T Consensus 188 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (404)
T 2o1b_A 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG 267 (404)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEec
Confidence 99999999999999999999999999999999999999887655556666543346789999999999889999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++++ +.+.........+++.+.|.++.++++.. ..++++++++++++++.+.+.|+++|+.+..+.+++|
T Consensus 268 ~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 338 (404)
T 2o1b_A 268 NKDMI--------QALKKYQTHTNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIY 338 (404)
T ss_dssp CHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCCBSSE
T ss_pred CHHHH--------HHHHHHHhhccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCcceE
Confidence 88875 66666665555678999999999888753 5678999999999999999999998888888778899
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 339 ~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 339 VWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAY 401 (404)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred EEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 999998 44567778887766799999999887555789999987789999999999998763
No 9
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=4.6e-47 Score=367.34 Aligned_cols=344 Identities=24% Similarity=0.414 Sum_probs=288.3
Q ss_pred CCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC-CCCC-cEEEcCCh
Q 045431 60 YPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLG-IEEG-DIFVSDGA 135 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~-~~~~-~i~~~~G~ 135 (433)
.+++++|+|+.|+++++.|+.+.+++.+.+. ....|++..|..++|+++++++.+ ++. ++++ +|++|+|+
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~ 100 (396)
T 3jtx_A 27 PEGMEAVPLHIGEPKHPTPKVITDALTASLH------ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGS 100 (396)
T ss_dssp CTTCCCEECSCCSCCSCCCHHHHHHHHHTGG------GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSH
T ss_pred ccCCCeEEeCCcCCCCCCCHHHHHHHHHHhh------hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCc
Confidence 4567899999999999999999999998764 345788888999999999999986 443 6688 99999999
Q ss_pred HHHHHH-HHHhcCCC-----CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----C
Q 045431 136 KCDISR-LQIVFGSN-----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----A 204 (433)
Q Consensus 136 ~~al~~-l~~l~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 204 (433)
++++.+ +..++++| |+|++++|+|+++...++..| .+++.++.+. .++..+++.. +
T Consensus 101 ~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~-~g~~~d~~~l~~~~~~ 167 (396)
T 3jtx_A 101 REALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGG------------GEIHFANCPA-PSFNPDWRSISEEVWK 167 (396)
T ss_dssp HHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTT------------CEEEEEECCT-TTCCCCGGGSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcC------------CEEEEeecCC-CCCccCHHHHHHhhcc
Confidence 999997 57788897 799999999999999999988 4788888843 3554444332 4
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCcccc----cCCCCcceEEEecccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFE----IPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~----~~~~~~~vi~i~S~sK~~ 279 (433)
++++|++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++ .+.+... +....+++++++||||.+
T Consensus 168 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 247 (396)
T 3jtx_A 168 RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS 247 (396)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS
T ss_pred CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc
Confidence 78999999999999999999999999999999999999999999988876 3443322 122256789999999999
Q ss_pred cccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 280 GFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 280 ~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+++|+|+||++++++++ +.+.........+++.+.|.++.++++. .+++++.+++++++++.+.+.|+++
T Consensus 248 ~~~G~r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 248 NVPGLRSGFVAGDAELL--------KNFLLYRTYHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV 317 (396)
T ss_dssp SCGGGCCEEEEECHHHH--------HHHHHHHHHHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccceEEEEeCHHHH--------HHHHHHHhhcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999988875 6676666666667899999999988874 3678999999999999999999886
Q ss_pred CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 360 GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+.+..+.+|+|+|++++..+..++...+++++||.+.||..|+. .+.+++||++..+++++++++++|+++++
T Consensus 318 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 396 (396)
T 3jtx_A 318 -FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLYR 396 (396)
T ss_dssp -SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHCC
T ss_pred -CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 55667788999999998767778888887778999999999875 35689999987899999999999999874
No 10
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=4.4e-47 Score=366.62 Aligned_cols=345 Identities=27% Similarity=0.408 Sum_probs=289.1
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCc-EEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGD-IFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~-i~~~~G~~~al 139 (433)
+++|+|+.|.+++++|+.+.+++.+.+.. ....|++..|..++|+++++++.+ ++.+++++ |++|+|+++++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~ 100 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDK-----GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF 100 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHH
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhC-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHH
Confidence 36899999999888889999999998864 235688778999999999999976 55578889 99999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~ 213 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.++++..+++. .+++++|++++
T Consensus 101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 168 (389)
T 1gd9_A 101 LMGLSAFLKDGEEVLIPTPAFVSYAPAVILAG------------GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINS 168 (389)
T ss_dssp HHHHTTTCCTTCEEEEEESCCTTHHHHHHHHT------------CEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHCC------------CEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEEC
Confidence 97 56678999999999999999999998888 47888888654343333221 24788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
||||||.++|.+++++|+++|++||++||+||+|+++.+++. +.++.++++..+++++++|+||++|++|+|+||++++
T Consensus 169 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 248 (389)
T 1gd9_A 169 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP 248 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEEC
Confidence 999999999999999999999999999999999999887765 5566666543567899999999999899999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
++++ +.+.........+.+.+.|.++.++++.... .++++++++++++++.+.+.|+++|+.+..+.++++
T Consensus 249 ~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 320 (389)
T 1gd9_A 249 SWII--------ERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFY 320 (389)
T ss_dssp HHHH--------HHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTE
T ss_pred HHHH--------HHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeE
Confidence 8774 6666655555567889999999999885321 278999999999999999999998888887778899
Q ss_pred EEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 372 VWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 372 ~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~ 383 (389)
T 1gd9_A 321 IFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 383 (389)
T ss_dssp ECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999997 4566778888775679999999988765678999998889999999999999875
No 11
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.2e-47 Score=371.60 Aligned_cols=347 Identities=26% Similarity=0.465 Sum_probs=284.1
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~ 137 (433)
++.++|+|+.|.++++.++.+.+++.+.+... ....|++..|..+||+++++++.+ +..+++ ++|++|+|+++
T Consensus 35 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 35 RGEDIIDLSMGNPDGPTPPHIVEKLCTVAQRE----DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHTC-------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred cCCCEEecCCCCCCCCCCHHHHHHHHHHHhCC----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 35578999999998888899999998877542 245788788999999999999976 555677 79999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC--CCCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST--VARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~i~l 211 (433)
++.+ +..++++||+|++++|+|+++...++..| .+++.++.+++.++..++ ++ .+++++|++
T Consensus 111 a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l 178 (412)
T 2x5d_A 111 GLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAG------------AQVRSVPLVPGIDFFNELERAIRESIPKPRMMIL 178 (412)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHT------------CEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEE
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeecCCccCCCCCHHHHHHhcccCceEEEE
Confidence 9997 57778999999999999999999998888 478888887543432222 21 257899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
++||||||.++|.+++++|+++|++||++||+||+|+++.+.+. +.++..++...+++++++|+||++|++|+|+||++
T Consensus 179 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 258 (412)
T 2x5d_A 179 GFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMV 258 (412)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEE
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEE
Confidence 99999999999999999999999999999999999999887653 45666664335678999999999998999999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
++++++ +.+.........+.+.++|.++.++++.. .+++++++++++++++.+.+.|+++|+.+..+.+|+
T Consensus 259 ~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~ 329 (412)
T 2x5d_A 259 GNPELV--------SALARIKSYHDYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASM 329 (412)
T ss_dssp ECHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSBSS
T ss_pred cCHHHH--------HHHHHHHhhhccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCeee
Confidence 988875 66666665556678999999999888743 367899999999999999999998888888777889
Q ss_pred EEEEECC-CC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFP-GR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~-~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|+|++++ +. +..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l 395 (412)
T 2x5d_A 330 YVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMF 395 (412)
T ss_dssp EEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 9999997 33 56777888777679999999988755678999998779999999999999875
No 12
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=5e-47 Score=364.54 Aligned_cols=344 Identities=24% Similarity=0.390 Sum_probs=285.0
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~ 137 (433)
++.++|+|+.|.++++.++.+.+++.+.+.+ .....|++..|..+||+++++++.+ +..++++ +|++|+|+++
T Consensus 23 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 23 RGVGLIDLSIGSTDLPPPEAPLKALAEALND----PTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHTTC----GGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred cCCCEEeccCCCCCCCCCHHHHHHHHHHHhC----CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 4567899999999888889999999998754 2245786656899999999999975 5555666 9999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----CCccEEEE
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----ARTDIIFF 211 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l 211 (433)
++.+ +..++++||+|++++|+|+++...++..| .+++.++. +.++..+++.. +++++|++
T Consensus 99 a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~v~l 164 (376)
T 2dou_A 99 GLAHLLLALTEPEDLLLLPEVAYPSYFGAARVAS------------LRTFLIPL--REDGLADLKAVPEGVWREAKVLLL 164 (376)
T ss_dssp HHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTT------------CEEEEECB--CTTSSBCGGGSCHHHHHHEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcC------------CEEEEeeC--CCCCCCCHHHHHHhhccCceEEEE
Confidence 9987 57778999999999999999999988888 47777777 23443443332 46889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
++||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.++..+.+..+++++++||||.+|++|+|+||+++
T Consensus 165 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 244 (376)
T 2dou_A 165 NYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALG 244 (376)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE
T ss_pred CCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEec
Confidence 99999999999999999999999999999999999999887664445554433346789999999999889999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++++ +.+.........+.+.++|.++.+++++ ...++++.++.++++++.+.+.|+++ +.+..+.+|+|
T Consensus 245 ~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~ 314 (376)
T 2dou_A 245 SEEAL--------ARLERVKGVIDFNQYAGVLRMGVEALKT-PKEVVRGYARVYRERALGMAEALKGV-LSLLPPRATMY 314 (376)
T ss_dssp CHHHH--------HHHHHHHHHHCCCSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCCBSSE
T ss_pred CHHHH--------HHHHHHHHhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCCeeEE
Confidence 98875 6666655555556789999999999985 35678999999999999999999988 88877778899
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++ +.+..++...++++ ||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 315 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l~ 376 (376)
T 2dou_A 315 LWGRLPEGVDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREALD 376 (376)
T ss_dssp EEEECCTTCCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHhC
Confidence 999998 44566777787776 99999999887555789999987789999999999998764
No 13
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=2.1e-47 Score=372.89 Aligned_cols=347 Identities=18% Similarity=0.277 Sum_probs=291.9
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~al 139 (433)
.++|+|+.|+|++++|+.+.+++.+.+.+. .....|++..|..++|+++++++.+ ++.+++ ++|++|+|+++++
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGD---FMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSC---GGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCC---CccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 368999999999999999999999988742 1246898888999999999999975 555777 7999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc----cC------CcccCCC---C--C
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA----EN------GFFPDLS---T--V 203 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~---~--~ 203 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+. ++ ++..+++ + .
T Consensus 105 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~ 172 (422)
T 3fvs_A 105 FTAFQALVDEGDEVIIIEPFFDCYEPMTMMAG------------GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT 172 (422)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC
T ss_pred HHHHHHHcCCCCEEEEcCCCchhhHHHHHHcC------------CEEEEEecccccccccccccccCCCCCHHHHHhhcC
Confidence 97 57778999999999999999999999888 4777888765 21 2223322 1 2
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++++|++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++. +.++.+++...+++++++|+||.+|++
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 252 (422)
T 3fvs_A 173 SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT 252 (422)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCG
T ss_pred CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCc
Confidence 5789999999999999999999999999999999999999999999888764 556777665457899999999999999
Q ss_pred ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc------CChhHHHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP------EGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|+|+||++++++++ +.+.........+.+.+.|.++.++++. ....++++++++++++++.+.+.|
T Consensus 253 G~r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 324 (422)
T 3fvs_A 253 GWKVGWVLGPDHIM--------KHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSL 324 (422)
T ss_dssp GGCCEEEECCHHHH--------HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCHHHH--------HHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998885 6666666656667889999998888863 223578999999999999999999
Q ss_pred hhcCCeeecCCCccEEEEECCC----CC----------hHHHHHHHHHcCCeEecCCCCCCC-----CCCCeEEEeeccC
Q 045431 357 NSLGFKVYGGKNAPYVWVQFPG----RS----------SWDVFSEILEKTHVVTTPGSGFGP-----GGEGFIRVSAFGH 417 (433)
Q Consensus 357 ~~~g~~~~~~~~g~~~~~~~~~----~~----------~~~~~~~l~~~~gi~v~~g~~f~~-----~~~~~iRi~~~~~ 417 (433)
+++|+.+..+.+++|+|++++. .. ..++...+++++||.+.||+.|+. .+.+++||++..+
T Consensus 325 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~ 404 (422)
T 3fvs_A 325 QSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKD 404 (422)
T ss_dssp HTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCC
T ss_pred HHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCC
Confidence 9999998888899999999862 11 457778888878999999999863 4578999999889
Q ss_pred hhHHHHHHHHHHHhh
Q 045431 418 RGNVLEACKRFKHLY 432 (433)
Q Consensus 418 ~~~l~~~l~~l~~~l 432 (433)
++++++++++|++++
T Consensus 405 ~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 405 EATLQAMDEKLRKWK 419 (422)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
No 14
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=2.4e-47 Score=366.77 Aligned_cols=336 Identities=21% Similarity=0.291 Sum_probs=285.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~ 141 (433)
++|+|+.|++++++|+.+.+++.+.+. ....|++..|..++|+++++++.+ +..+++++|++|+|+++++.+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~------~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~ 97 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTH------SLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN 97 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGG------GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhh------hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence 799999999999899999999988762 345788888999999999999976 445588999999999999997
Q ss_pred -HHHhcCC--CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--CCCccEEEEcCCCC
Q 045431 142 -LQIVFGS--NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--VARTDIIFFCSPNN 216 (433)
Q Consensus 142 -l~~l~~~--gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~p~n 216 (433)
+..++++ ||+|++++|+|+++...++..| .+++.++.++++++..++++ .+++++|++++|||
T Consensus 98 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~n 165 (376)
T 3ezs_A 98 FPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIK------------AKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNN 165 (376)
T ss_dssp HHHHHTTTCSSCEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCT
T ss_pred HHHHHcCCCCCCEEEEecCCcHhHHHHHHHcC------------CEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCC
Confidence 6778899 9999999999999999999888 48888888876555544443 24789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC-----CCcceEEEecccccccccccceeeeec
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG-----AKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~-----~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
|||.+++.+++++|+++|++||+++|+||+|+++.+++.+.++..... ..+++++++||||++|++|+|+||+++
T Consensus 166 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 245 (376)
T 3ezs_A 166 PTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG 245 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEee
Confidence 999999999999999999999999999999999888765555544311 256889999999999989999999999
Q ss_pred cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccE
Q 045431 292 PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPY 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 371 (433)
+++++ +.+.........+.+.+.|.++.++++. .+++++.+++++++++.+.+.|+ ++. .+.+|+|
T Consensus 246 ~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~~~~~~ 311 (376)
T 3ezs_A 246 DSRLL--------EKYKAFRAYLGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL--IYPYSFY 311 (376)
T ss_dssp CHHHH--------HHHHHHHTTTCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--CCSBSSE
T ss_pred CHHHH--------HHHHHHHhhhcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--CCCcceE
Confidence 88875 6677666655667899999999998875 35678999999999999999998 655 5678999
Q ss_pred EEEECCCCChHHHHHHHHHcCCeEecCCCCCC--CCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 372 VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG--PGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~--~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+|++++ +..++...+++++||.+.||..|+ ..+++++||++..+++++++++++|+++++
T Consensus 312 ~~~~~~--~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 312 VYLPVQ--NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp EEEECS--CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred EEEECC--CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 999998 567788888775699999999998 456789999987799999999999998864
No 15
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=7.7e-47 Score=367.48 Aligned_cols=346 Identities=19% Similarity=0.289 Sum_probs=288.9
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~a 138 (433)
+.++|+|+.|+|++++|+.+.+++.+.+.. .....|++..|..++|+++++++.+ ++.+++ ++|++|+|++++
T Consensus 22 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a 97 (410)
T 3e2y_A 22 DPSVVNLGQGFPDISPPSYVKEELSKAAFI----DNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS 97 (410)
T ss_dssp STTSEECSSCCCCSCCCHHHHHHHHHHHTC----GGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhC----ccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 356899999999999999999999998864 2345888888999999999999975 666777 899999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc---------CCcccCC---CC--C
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE---------NGFFPDL---ST--V 203 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~--~ 203 (433)
+.+ +..++++||+|+++.|+|.++...+...| .+++.++.+.. .++..++ ++ .
T Consensus 98 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~ 165 (410)
T 3e2y_A 98 LFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAG------------AVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS 165 (410)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEeccccccccccccccCCcCCHHHHHhhcC
Confidence 997 57788999999999999999999999888 36677766521 1222222 21 2
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++++|++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++. +.++.+++...+++++++||||.+|++
T Consensus 166 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 245 (410)
T 3e2y_A 166 SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVT 245 (410)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCG
T ss_pred CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCC
Confidence 5789999999999999999999999999999999999999999999888764 556766665567899999999999999
Q ss_pred ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc------CChhHHHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP------EGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|+|+||++++++++ +.+.........+.+.+.|.++.+++++ ....+++++++.++++++.+.+.|
T Consensus 246 G~r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 317 (410)
T 3e2y_A 246 GWKLGWSIGPAHLI--------KHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLL 317 (410)
T ss_dssp GGCCEEEECCHHHH--------HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECHHHH--------HHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998885 6666666666677899999998888863 223578999999999999999999
Q ss_pred hhcCCeeecCCCccEEEEECCCC----C--------hHHHHHHHHHcCCeEecCCCCCCCC-----CCCeEEEeeccChh
Q 045431 357 NSLGFKVYGGKNAPYVWVQFPGR----S--------SWDVFSEILEKTHVVTTPGSGFGPG-----GEGFIRVSAFGHRG 419 (433)
Q Consensus 357 ~~~g~~~~~~~~g~~~~~~~~~~----~--------~~~~~~~l~~~~gi~v~~g~~f~~~-----~~~~iRi~~~~~~~ 419 (433)
+++|+.+..+.+++|+|++++.. + ..++...+++++||.+.||..|+.. +.+++||++..+++
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e 397 (410)
T 3e2y_A 318 NSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDS 397 (410)
T ss_dssp HTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHH
T ss_pred HHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHH
Confidence 99999988888999999998621 1 2367777887789999999988642 36899999988999
Q ss_pred HHHHHHHHHHHh
Q 045431 420 NVLEACKRFKHL 431 (433)
Q Consensus 420 ~l~~~l~~l~~~ 431 (433)
++++++++|+++
T Consensus 398 ~l~~~l~~l~~~ 409 (410)
T 3e2y_A 398 TLDAAEEIFRAW 409 (410)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 16
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=3.3e-47 Score=373.43 Aligned_cols=344 Identities=20% Similarity=0.333 Sum_probs=282.3
Q ss_pred CceEEecCCCCCC--CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHHH
Q 045431 63 AEVISLGIGDTTE--PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCDI 139 (433)
Q Consensus 63 ~~~i~l~~g~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~al 139 (433)
+++|+|+.|.|+. .+++.+.+++.+.+.+.. ....+|++..|.++||+++++++.+..++ ++++|++|+|+++++
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYA--DKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSH--HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhh--HHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 4689999998863 367888899988886521 12458988889999999999999653334 789999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C------CCccEE
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V------ARTDII 209 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~------~~~~~i 209 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ +++.+ +++ . .++++|
T Consensus 154 ~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~L~~~l~~~~~~~~~~k~v 220 (448)
T 3aow_A 154 DLIGRVFLNPGDIVVVEAPTYLAALQAFNFYE------------PQYIQIPLDDE-GMKVEILEEKLKELKSQGKKVKVV 220 (448)
T ss_dssp HHHHHHHCCTTCEEEEEESCCHHHHHHHHTTC------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHcCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEeccCCC-CCCHHHHHHHHhhhhccCCCCeEE
Confidence 97 57778999999999999999999988888 47778887653 22222 221 1 278887
Q ss_pred E-EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccccccee
Q 045431 210 F-FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 210 ~-l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+ +++||||||.+++.+++++|+++|++||++||+||+|+++.+++. +.++.+++. .+++++++||||+++ +|+|+|
T Consensus 221 ~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~-~~~vi~~~S~SK~~~-~GlriG 298 (448)
T 3aow_A 221 YTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDN-EGRVIYLGTFSKILA-PGFRIG 298 (448)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCT-TSCEEEEEESTTTTC-GGGCCE
T ss_pred EECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCC-CCCEEEEccchhhcc-ccccEE
Confidence 5 469999999999999999999999999999999999999888764 456667653 468999999999998 999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc---CCee
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL---GFKV 363 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~---g~~~ 363 (433)
|++++++++ +.+.........+++.++|.++.++|+.... ++++++++.++++++.+.+.|+++ |+.+
T Consensus 299 ~v~~~~~l~--------~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~ 370 (448)
T 3aow_A 299 WMVGDPGII--------RKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKW 370 (448)
T ss_dssp EEEECHHHH--------HHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred EEEeCHHHH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 999998875 6666655555566799999999999975433 678999999999999999999985 7888
Q ss_pred ecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCC--CCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 364 YGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPG--GEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
..|.+|+|+|++++ +.+..++...++++ ||.+.||..|+.. +++++||++.. +++++++++++|++++
T Consensus 371 ~~p~~g~~~~v~~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l 442 (448)
T 3aow_A 371 TKPEGGMFIWVTLPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETI 442 (448)
T ss_dssp CCCSBSSEEEEECSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHH
T ss_pred eCCCccEEEEEEcCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 88888999999998 45677788887776 9999999988653 46899999865 7999999999999875
No 17
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=3.7e-46 Score=360.12 Aligned_cols=340 Identities=24% Similarity=0.398 Sum_probs=284.7
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|.++++.|+.+.+++.+.+.. ....|++..|..+||+++++++.+ ++.+++++|++|+|+++++
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al 114 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQK-----GEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQAL 114 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTT-----CCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHH
Confidence 457899999999888889999999998853 234787778999999999999975 5556889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l~~ 213 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.++++..+++ + .+++++|++++
T Consensus 115 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 182 (389)
T 1o4s_A 115 FNAFMALLDPGDEVIVFSPVWVSYIPQIILAG------------GTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS 182 (389)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcC
Confidence 97 57778999999999999999999988888 4788888865334333322 1 24788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|+||||.++|.+++++|+++|++||+++|+||+|+++.+++.+.++..++...+++++++||||++|++|+|+||+++++
T Consensus 183 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~ 262 (389)
T 1o4s_A 183 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 262 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCH
Confidence 99999999999999999999999999999999999988765445666664335678999999999998999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+.........+++.+.|.++.++++.. +++++++++++++.+.+.|+++|+.+..+.+++++|
T Consensus 263 ~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 330 (389)
T 1o4s_A 263 KVA--------TAVSKIQSHTTSCINTVAQYAALKALEVD----NSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLF 330 (389)
T ss_dssp HHH--------HHHHHHHHHHTCSCCHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEE
T ss_pred HHH--------HHHHHHhhhcccCCCHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHhcCCeeecCCcceEEE
Confidence 874 66666655555667889999999998854 478889999999999999998888887777889999
Q ss_pred EECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 374 VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
++++ .+..++...+++++||.+.||..|+. ++++||++..+++++++++++|+++++
T Consensus 331 ~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 331 FKVR-GDDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFATSIERLTEALDRIEDFLN 387 (389)
T ss_dssp EECS-SCHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred EeCC-CCHHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 9997 56677778877566999999988864 469999998899999999999998864
No 18
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=4.5e-46 Score=363.80 Aligned_cols=351 Identities=22% Similarity=0.323 Sum_probs=286.6
Q ss_pred CCCceEEecCCCCC----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDTT----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~~~~~~i~~~~G~ 135 (433)
++.++|+|+.|+|+ +++++.+.+++.+.+.. .....|++..|..++|+++++++.+ ++.+++++|++|+|+
T Consensus 52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDS----GKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHH----CCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhc----CcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 45578999999985 57889999999998875 3356898889999999999999964 445788999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEE
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDII 209 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i 209 (433)
++++.+ +..++++||+|++++|+|.++...++..| .+++.++.+++.++..+++ + .++++++
T Consensus 128 t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 195 (427)
T 3dyd_A 128 SQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMG------------IEVKLYNLLPEKSWEIDLKQLEYLIDEKTACL 195 (427)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEEEGGGTTEECHHHHHSSCCTTEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHHhccCCCEE
Confidence 999997 57778999999999999999999999999 4777787765444443432 1 2468899
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++. +.++..++. ..++++++||||.++++|+|+||
T Consensus 196 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~-~~~vi~~~S~sK~~~~~G~riG~ 274 (427)
T 3dyd_A 196 IVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLST-DVPILSCGGLAKRWLVPGWRLGW 274 (427)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCS-SCCEEEEEESTTTSSCGGGCCEE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCC-CCcEEEEeeccccCCCcCcceEE
Confidence 9999999999999999999999999999999999999999888764 445555543 44689999999999899999999
Q ss_pred eeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCC
Q 045431 289 TVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGK 367 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~ 367 (433)
+++++.... ..+.+.+.+...... ..+++.+.|.++.++++....+++++++++++++++.+.+.|+++ |+.+..|.
T Consensus 275 ~~~~~~~~~-~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~ 352 (427)
T 3dyd_A 275 ILIHDRRDI-FGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS 352 (427)
T ss_dssp EEEECSTTS-SHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCS
T ss_pred EEecCcchh-hHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC
Confidence 998853100 001113444443322 456899999999999985556778999999999999999999998 88888888
Q ss_pred CccEEEEECC------CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFP------GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|+|+|+.++ ..+..++...+++++||.+.||..|+. ++++||++..+++++++++++|++++
T Consensus 353 ~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~~~~e~i~~~l~~l~~~l 421 (427)
T 3dyd_A 353 GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVITVPEVMMLEACSRIQEFC 421 (427)
T ss_dssp BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESCSCHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999886 245677888888777999999998864 57999999889999999999999875
No 19
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=2.1e-46 Score=361.53 Aligned_cols=340 Identities=21% Similarity=0.301 Sum_probs=283.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al~ 140 (433)
++|+|+.|.+++++|+.+.+++.+.+.. ....|++..|..+||+++++++.+ +.+++++ +|++|+|+++++.
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 105 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVAQ-----GANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY 105 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHh-----hccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHH
Confidence 5899999999888889999999998863 245787778999999999999976 5567788 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSP 214 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p 214 (433)
+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ ++..+++. .+++++|++++|
T Consensus 106 ~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~l~~p 172 (386)
T 1u08_A 106 AAITALVRNGDEVICFDPSYDSYAPAIALSG------------GIVKRMALQPP-HFRVDWQEFAALLSERTRLVILNTP 172 (386)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCTT-TCCCCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHHhCCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEeecCcc-cCcCCHHHHHHhhcccCEEEEEeCC
Confidence 7 57778999999999999999999888888 47788887643 22223221 257899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||||.++|.+++++|+++|++||++||+||+|+++.+++. +.++..++...+++++++|+||.+|++|+|+||+++++
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 252 (386)
T 1u08_A 173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA 252 (386)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH
Confidence 99999999999999999999999999999999999887653 34555443224578999999999998999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+.........+.+.+.|.++.++++.. ..++++++++++++++.+.+.|+++|+.+..+.+|+|+|
T Consensus 253 ~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~ 323 (386)
T 1u08_A 253 PIS--------AEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLL 323 (386)
T ss_dssp HHH--------HHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEE
T ss_pred HHH--------HHHHHHHHhhccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEE
Confidence 874 66666555455667888999888888743 467889999999999999999999899888777889999
Q ss_pred EECCC---CChHHHHHHHHHcCCeEecCCCCCCC--CCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 374 VQFPG---RSSWDVFSEILEKTHVVTTPGSGFGP--GGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 374 ~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
++++. .+..++...+++++||.+.||..|+. .+++++||++..+++++++++++|++
T Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 324 VDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp EECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 99985 35677777787777999999988864 35689999998899999999999975
No 20
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=5.9e-46 Score=357.85 Aligned_cols=344 Identities=21% Similarity=0.306 Sum_probs=286.9
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|++++++|+.+.+++.+.+.+ ....|++. ..++++++++++.+ +..+++++|++|+|+++++
T Consensus 23 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~ 95 (383)
T 3kax_A 23 NEELIHAWIADMDFEVPQPIQTALKKRIEH-----PIFGYTLP--PENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPAL 95 (383)
T ss_dssp SSCCEECCCSSCSSCCCHHHHHHHHHHHHS-----CCCCCCCC--CTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCeeecccccCCCCCCHHHHHHHHHHHhc-----CCCCCCCC--CHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHH
Confidence 467999999999999999999999998863 34567554 78999999999986 4447889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCC-cccCCCC-----CCCccEEEEc
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG-FFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~i~l~ 212 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+++ +..+++. .+++++|+++
T Consensus 96 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~ 163 (383)
T 3kax_A 96 STSIQAFTKENESVLVQPPIYPPFFEMVTTNN------------RQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLC 163 (383)
T ss_dssp HHHHHHHCCTTCEEEECSSCCHHHHHHHHHTT------------CEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcC------------CEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEe
Confidence 97 67788999999999999999999999888 4788888764433 2233221 3688999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCC-CcceEEEecccccccccccceeeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGA-KEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~-~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+||||||.+++.+++++|+++|++||+++|+||+|+++.+.+. +.++..+... .+++++++||||.+|++|+|+||++
T Consensus 164 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 243 (383)
T 3kax_A 164 SPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIII 243 (383)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEE
Confidence 9999999999999999999999999999999999999888764 4556555321 3678999999999999999999999
Q ss_pred cc-ccccccCCcchhHHHHHHHhhc-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeeecC
Q 045431 291 IP-KELLFSDGFPVAKDFNRIVCTC-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVYGG 366 (433)
Q Consensus 291 ~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~ 366 (433)
++ ++++ +.+....... ..+++.++|.++.++++. ..+++++.+++++++++.+.+.|+++ |+.+..+
T Consensus 244 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 314 (383)
T 3kax_A 244 IPNEKLR--------QAFTSIQYRQGFHGLNIFAYTAMQSAYTE-CNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKP 314 (383)
T ss_dssp CCCHHHH--------HHHHHHHHHTTCCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC
T ss_pred eCCHHHH--------HHHHHHHhhcccCCCCHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC
Confidence 85 4553 5565554333 346889999999998885 45678999999999999999999985 8999888
Q ss_pred CCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 367 KNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 367 ~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++|++++ +.+..++...|++++||.+.||..|+..+++++||++..+++++++++++|++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 383 (383)
T 3kax_A 315 EGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRLRHTFS 383 (383)
T ss_dssp SBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSSCHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 88999999998 35777888888767799999999998777899999998899999999999999874
No 21
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=5.1e-46 Score=363.86 Aligned_cols=348 Identities=18% Similarity=0.267 Sum_probs=287.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al~ 140 (433)
++|+|+.|.+++++|+.+.+++.+.+.... .....|++..|..+||+++++++.+ +.+++++ +|++|+|+++++.
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 115 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 115 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCSC--GGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhccc--cCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHH
Confidence 589999999988888999999999886421 1356788778999999999999976 5557788 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC--------CcccCCCC-----CCCc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN--------GFFPDLST-----VART 206 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-----~~~~ 206 (433)
+ +..++++||+|++++|+|+++...++..| .+++.++.+.+. ++..+++. .+++
T Consensus 116 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 183 (429)
T 1yiz_A 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAG------------GIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKT 183 (429)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTE
T ss_pred HHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEeCCcccccccccccCcccCHHHHHHHhccCc
Confidence 7 57778999999999999999999888888 477778876531 22233221 2578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccc
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
++|++++||||||.++|.+++++|+++|++||++||+||+|+++.+++. ..++..++...+++++++|+||.+|++|+|
T Consensus 184 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r 263 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWK 263 (429)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGC
T ss_pred eEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcc
Confidence 9999999999999999999999999999999999999999999887653 445655543457889999999999989999
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc-----CC-hhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP-----EG-FKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-----~~-~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
+||++++++++ +.+.........+.+.+.|.++.++|+. .. ..++++.+++++++++.+.+.|+++
T Consensus 264 ~G~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 335 (429)
T 1yiz_A 264 IGWAYGPEALL--------KNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 335 (429)
T ss_dssp CEEEESCHHHH--------HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCHHHH--------HHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998874 6666655555667889999988888875 32 3578999999999999999999988
Q ss_pred CCeeecCCCccEEEEECCCC-------------ChHHHHHHHHHcCCeEecCCCCCCCC-----CCCeEEEeeccChhHH
Q 045431 360 GFKVYGGKNAPYVWVQFPGR-------------SSWDVFSEILEKTHVVTTPGSGFGPG-----GEGFIRVSAFGHRGNV 421 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~l~~~~gi~v~~g~~f~~~-----~~~~iRi~~~~~~~~l 421 (433)
|+.+..+.+|+|+|++++.. +..++...+++++||.+.||..|+.. +.+++||++..+++++
T Consensus 336 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i 415 (429)
T 1yiz_A 336 GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENL 415 (429)
T ss_dssp TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHH
T ss_pred CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHH
Confidence 99888777899999999842 34566777776779999999888642 2679999998899999
Q ss_pred HHHHHHHHHhhC
Q 045431 422 LEACKRFKHLYK 433 (433)
Q Consensus 422 ~~~l~~l~~~l~ 433 (433)
++++++|+++++
T Consensus 416 ~~~l~~l~~~l~ 427 (429)
T 1yiz_A 416 QKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhcc
Confidence 999999998864
No 22
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=9.8e-47 Score=362.56 Aligned_cols=351 Identities=17% Similarity=0.217 Sum_probs=290.4
Q ss_pred HHHHHHhcCCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcE
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDI 129 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i 129 (433)
..+......+++++|||+.|++++++|+.+.+++.+.+.+ ....|++ .| .++|+++++++.+ ++.+++++|
T Consensus 12 ~~g~~~~d~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i 84 (377)
T 3fdb_A 12 ARNTMKWTRYGQGVLPLWVAESDFSTCPAVLQAITDAVQR-----EAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWI 84 (377)
T ss_dssp HTCCHHHHSSCTTSEECCSSCCCSCCCHHHHHHHHHHHHT-----TCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred CCCCceeeccCCCeeeecccCCCCCCCHHHHHHHHHHHHc-----CCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHE
Confidence 3333344455778999999999999999999999998863 3457877 77 9999999999974 555789999
Q ss_pred EEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCC
Q 045431 130 FVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VAR 205 (433)
Q Consensus 130 ~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 205 (433)
++|+|+++++.+ +..++++||+|+++.|+|+++...++..| .+++.++.+.+ ++.+ +++ .++
T Consensus 85 ~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~--~d~~~l~~~l~~~ 150 (377)
T 3fdb_A 85 FPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQ------------REGIFIDATGG--INLHDVEKGFQAG 150 (377)
T ss_dssp EEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHT------------CCEEEEECTTS--CCHHHHHHHHHTT
T ss_pred EEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcC------------CEEEEccCCCC--CCHHHHHHHhccC
Confidence 999999999997 57788999999999999999999999998 47888888654 2211 221 246
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCcccccCCCCcceEEEecccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIFEIPGAKEVAIETSSFSKYAGFTG 283 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~vi~i~S~sK~~~~~G 283 (433)
++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+.+ .+.++..++. .+++++++||||.+|++|
T Consensus 151 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G 229 (377)
T 3fdb_A 151 ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA-ASVCITITAPSKAWNIAG 229 (377)
T ss_dssp CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH-HHHEEEEECSTTTTTCGG
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC-CCcEEEEEeChHhccCcc
Confidence 8899999999999999999999999999999999999999999988876 3445555433 567899999999999899
Q ss_pred cceeeeec-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--C
Q 045431 284 VRLGWTVI-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--G 360 (433)
Q Consensus 284 ~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g 360 (433)
+|+||+++ +++++ +.+.........+++.++|.++.++++.. .+++++++++++++++.+.+.|+++ |
T Consensus 230 ~r~G~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 300 (377)
T 3fdb_A 230 LKCAQIIFSNPSDA--------EHWQQLSPVIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPG 300 (377)
T ss_dssp GCCEEEECCSHHHH--------HHHHHSCHHHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hhheEEEeCCHHHH--------HHHHHHHHhhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999887 45553 56665555555678999999988888743 5678999999999999999999985 8
Q ss_pred CeeecCCCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 361 FKVYGGKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+.+..+.+++++|++++.. .+.++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 301 AKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVS 374 (377)
T ss_dssp CEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 9998888899999999842 335677788877799999999998767789999998899999999999998864
No 23
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=1.2e-45 Score=357.56 Aligned_cols=343 Identities=21% Similarity=0.362 Sum_probs=277.1
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|.|++++|+.+.+++.+.+..... .....|++..|..+||+++++++.+ ++++++++|++|+|+++++
T Consensus 34 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al 112 (398)
T 3ele_A 34 KENVYDFSIGNPSIPAPQIVNDTIKELVTDYDS-VALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASL 112 (398)
T ss_dssp GGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCH-HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred CCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCc-cccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHH
Confidence 346899999999888899999999998875210 1146898889999999999999975 6668899999999999999
Q ss_pred HH-HHHhcCCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 140 SR-LQIVFGSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 140 ~~-l~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
.+ +..++++| |+|++++|+|+++...++..| .+++.++.+.+ ++..+++. .+++++|+++
T Consensus 113 ~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~ 179 (398)
T 3ele_A 113 SICFRALTSDAYDEFITIAPYFPEYKVFVNAAG------------ARLVEVPADTE-HFQIDFDALEERINAHTRGVIIN 179 (398)
T ss_dssp HHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECCCTT-TSSCCHHHHHHTCCTTEEEEEEC
T ss_pred HHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEecCCc-CCcCCHHHHHHHhCcCCCEEEEc
Confidence 97 57788999 999999999999999999888 47888888653 33333221 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHH------cCCEEEEeccccccccCCCCCc-ccccCCCCcceEEEecccccccccccc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKD------NGSIIVYDSAYALYISDDNPRS-IFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~------~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+||||||.+++.+++++|+++|++ ||++||+||+|+++.+++.+.+ ... ..+++++++||||++|++|+|
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G~r 256 (398)
T 3ele_A 180 SPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK---YYDNTLVCYSYSKSLSLPGER 256 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG---TCSSEEEEEESTTTSSCTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh---hcCCeEEEEehhhcCCCccce
Confidence 999999999999999999999999 9999999999999888764322 222 246789999999999999999
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhh-ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCT-CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
+||++++++++. ...+...+...... ....++.+.|.++.++++... .+++++++++.+.+.|+++|+.+.
T Consensus 257 ~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~l~~~L~~~g~~~~ 328 (398)
T 3ele_A 257 IGYVLVPDEVYD--KAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG------DINAYKENRDLLYEGLTRIGYHCF 328 (398)
T ss_dssp CEEEECCTTSTT--HHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC------CHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEEcchhhh--HHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHcCCeec
Confidence 999999988641 01112233333222 245577889988887776432 357788999999999998899988
Q ss_pred cCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 365 GGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+.+++++|++++..+..++...+ +++||.+.||..|+. ++++||++..+++++++++++|++++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~--~~~iRis~~~~~e~i~~~l~~l~~~l 393 (398)
T 3ele_A 329 KPDGAFYMFVKALEDDSNAFCEKA-KEEDVLIVAADGFGC--PGWVRISYCVDREMIKHSMPAFEKIY 393 (398)
T ss_dssp CCSBSSEEEEECSSSCHHHHHHHH-HTTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEEcCCCCHHHHHHHH-HHCCEEEeCccccCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 888899999999866666676655 566999999998864 57999999889999999999999876
No 24
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=5.8e-46 Score=358.63 Aligned_cols=344 Identities=25% Similarity=0.395 Sum_probs=286.1
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
+++++|+|+.|.++++.|+.+.+++.+.+.. ....|++..|..++|+++++++.+ ++.+++++|++|+|++++
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a 102 (388)
T 1j32_A 28 EGIDVCSFSAGEPDFNTPKHIVEAAKAALEQ-----GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQS 102 (388)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred cCCCEEECCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHH
Confidence 3567899999999888889999999988853 235788888999999999999975 555678999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEc
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFC 212 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~ 212 (433)
+.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+.++..+++. .+++++|+++
T Consensus 103 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~ 170 (388)
T 1j32_A 103 IFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAE------------GTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFN 170 (388)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcC------------CEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEe
Confidence 997 57778999999999999999999888888 47888887654343333221 2578899999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-CCcceEEEecccccccccccceeeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+|+||||.++|.+++++|+++|++||+++|+||+|+++.+++. +.++..++. ..+++++++|+||++|++|+|+||++
T Consensus 171 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~ 250 (388)
T 1j32_A 171 TPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLA 250 (388)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEE
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEE
Confidence 9999999999999999999999999999999999999887653 345555532 13578999999999998999999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCc
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNA 369 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g 369 (433)
++++++ +.+.........+++.+.|.++.++++. ..+++++++++++++++.+.+.|+++ |+.+..+.++
T Consensus 251 ~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 321 (388)
T 1j32_A 251 GPVPLV--------KAATKIQGHSTSNVCTFAQYGAIAAYEN-SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGA 321 (388)
T ss_dssp CCHHHH--------HHHHHHHHTTTCSCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBT
T ss_pred eCHHHH--------HHHHHHHhhcccCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCee
Confidence 998874 6666666555666888999988888863 34678899999999999999999998 8888888788
Q ss_pred cEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+++|++++ +.+..++...+++++||.+.||..|+. ++++|+++..+++++++++++|++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~i~~~~~~l~~~l 384 (388)
T 1j32_A 322 FYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYATDLDTIKRGMERLEKFL 384 (388)
T ss_dssp TEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEecCCHHHHHHHHHHHHHHH
Confidence 99999887 356677887877656999999988864 57899999889999999999998875
No 25
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=8.8e-46 Score=355.10 Aligned_cols=339 Identities=25% Similarity=0.396 Sum_probs=281.5
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|.++++.|+.+.+++.+.+.. ....|++..|..+||+++++++.+ ++.+++++|++|+|+++++
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 102 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKE-----GKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGL 102 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHc-----CccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHH
Confidence 457899999999877789999999998863 245787778999999999999975 5567889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCcc
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPT 218 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPt 218 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ .+...+ .+++++|++++|||||
T Consensus 103 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~d~~-~l~~~l--~~~~~~v~~~~p~npt 167 (370)
T 2z61_A 103 FFALSSIIDDGDEVLIQNPCYPCYKNFIRFLG------------AKPVFCDFTVE-SLEEAL--SDKTKAIIINSPSNPL 167 (370)
T ss_dssp HHHHHHHCCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECSSHH-HHHHHC--CSSEEEEEEESSCTTT
T ss_pred HHHHHHhcCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEeCCCHH-HHHHhc--ccCceEEEEcCCCCCc
Confidence 97 57778999999999999999999988888 36666663221 111111 2478899999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
|.+++.+ |+++|++||++||+||+|+++.+++.+.++..+++..+++++++||||++|++|+|+||++++++++
T Consensus 168 G~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~-- 241 (370)
T 2z61_A 168 GEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEII-- 241 (370)
T ss_dssp CCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHH--
T ss_pred CcccCHH----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHH--
Confidence 9999976 9999999999999999999988766555666664345788999999999998999999999998874
Q ss_pred CCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC
Q 045431 299 DGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~ 378 (433)
+.+.........+.+.+.|.++.++++..+.+++++.+++++++++.+.+.|+++|+.+..+.+|+++|++++.
T Consensus 242 ------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 315 (370)
T 2z61_A 242 ------EAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIGE 315 (370)
T ss_dssp ------HHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCSS
T ss_pred ------HHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCcceEEEEecCC
Confidence 66666665555678999999988888741356788999999999999999999888888777789999999986
Q ss_pred CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 316 -~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 316 -DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp -CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 667777787756699999999887545689999998899999999999998864
No 26
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.4e-46 Score=361.08 Aligned_cols=344 Identities=21% Similarity=0.283 Sum_probs=284.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~-~i~~~~G~~~al~ 140 (433)
++|+|+.|.++++.++.+.+++.+.+.. ....|++..|..+||+++++++.+ ++.++++ +|++|+|+++++.
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~ 100 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAG-----GVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIA 100 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHH
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHH
Confidence 4799999999888889999999998863 245788888999999999999975 5556787 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCcc-CCcccCCCC-----CCCccEEEEcC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE-NGFFPDLST-----VARTDIIFFCS 213 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~i~l~~ 213 (433)
+ +..++++||+|++++|+|+++...+...| .+++.++.+.+ .++..+++. .+++++|++++
T Consensus 101 ~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~ 168 (411)
T 2o0r_A 101 AAVLGLVEPGSEVLLIEPFYDSYSPVVAMAG------------AHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINS 168 (411)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHhcCCCCEEEEeCCCcHhHHHHHHHcC------------CEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeC
Confidence 7 57778999999999999999999888888 47777777543 122233221 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
|+||||.+++.+++++|+++|++||++||+||+|+++.+++. +.++..++...+++++++|+||.+|++|+|+||++++
T Consensus 169 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 248 (411)
T 2o0r_A 169 PHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP 248 (411)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC
Confidence 999999999999999999999999999999999999887653 4566666443567899999999999899999999998
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++++ +.+.........+.+.+.|.++.++++.. .+++++++++++++++.+.+.|++.|+.+..+.+|+++
T Consensus 249 ~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~ 319 (411)
T 2o0r_A 249 AELI--------AGVRAAKQYLSYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFL 319 (411)
T ss_dssp HHHH--------HHHHHHHHHHTSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBSSEE
T ss_pred HHHH--------HHHHHHHhhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCeeEEE
Confidence 8774 55655554444556788888888888643 56788999999999999999999889988887788999
Q ss_pred EEECCC---CChHHHHHHHHHcCCeEecCCCCCCC-C----------CCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 373 WVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGP-G----------GEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 373 ~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~-~----------~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
|++++. .+..++...+++++||.+.||..|.. . +++++||+++.+++++++++++|+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~ 394 (411)
T 2o0r_A 320 CADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAE 394 (411)
T ss_dssp EEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC
T ss_pred EEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 999974 45677778787667999999988842 2 3578999998889999999999998763
No 27
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=9.4e-46 Score=359.42 Aligned_cols=344 Identities=16% Similarity=0.222 Sum_probs=286.6
Q ss_pred ceEEecCCCCC-CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCC-CcEEEcCChHHHH
Q 045431 64 EVISLGIGDTT-EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEE-GDIFVSDGAKCDI 139 (433)
Q Consensus 64 ~~i~l~~g~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~-~~i~~~~G~~~al 139 (433)
.+|||+.|++. +++++.+.+++.+.+... ....|++..|..++++++++++.+ +..+++ ++|++|+|+++++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~ 115 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSG----GVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL 115 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHT----HHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcC----CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence 48999999876 788899999999988752 234688888999999999999986 544545 7999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc----cCCcccCCCC-----CCCccEE
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA----ENGFFPDLST-----VARTDII 209 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~i 209 (433)
.+ +..++++||+|++++|+|.++...++..| .+++.++.+. +.++..+++. ..++++|
T Consensus 116 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 183 (407)
T 3nra_A 116 FLAVAATVARGDKVAIVQPDYFANRKLVEFFE------------GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVF 183 (407)
T ss_dssp HHHHHTTCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEE
T ss_pred HHHHHHhCCCCCEEEEcCCcccchHHHHHHcC------------CEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEE
Confidence 97 57778999999999999999999999998 4778888732 1222333322 2478899
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccC-CCCcceEEEeccccccccccccee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIP-GAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
++++||||||.+++.+++++|+++|++||+++|+||+|+.+.+++. ..++..++ ...+++++++||||.+|++|+|+|
T Consensus 184 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 263 (407)
T 3nra_A 184 LFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLG 263 (407)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCE
T ss_pred EEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEE
Confidence 9999999999999999999999999999999999999999888764 44555554 346789999999999999999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecC
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGG 366 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~ 366 (433)
|++++++++ +.+.........+++.+.|.++.++++. ...++++.+++++++++.+.+.|+++ ++.+..+
T Consensus 264 ~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 334 (407)
T 3nra_A 264 VAFGSRAII--------ARMEKLQAIVSLRAAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFARTP 334 (407)
T ss_dssp EEEECHHHH--------HHHHHHHHHHTSSSCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCC
T ss_pred EEEcCHHHH--------HHHHHHHhhhccCCChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCceeccC
Confidence 999988875 6666666666666788899888888873 33567888899999999999999998 8888888
Q ss_pred CCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 367 KNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 ~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+++++|+.++. .+..++...+++++||.+.||..|++.+.+++||++..+++++++++++|++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~ 402 (407)
T 3nra_A 335 QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLV 402 (407)
T ss_dssp SBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 888999999984 466777777777679999999999877789999999889999999999999876
No 28
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=1.1e-45 Score=358.90 Aligned_cols=342 Identities=26% Similarity=0.372 Sum_probs=283.4
Q ss_pred CCceEEecCCCC---CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChH
Q 045431 62 DAEVISLGIGDT---TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAK 136 (433)
Q Consensus 62 ~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~ 136 (433)
++++|+|+.|.+ +++.|+.+.+++.+.+.. ....|++..|..++|+++++++.+ ++++++++|++|+|++
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~ 111 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKE-----GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVT 111 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHH
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChH
Confidence 457899999998 777889999999988863 234787778999999999999975 6678889999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEE
Q 045431 137 CDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIF 210 (433)
Q Consensus 137 ~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 210 (433)
+++.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+.++..+++. .+++++|+
T Consensus 112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~ 179 (406)
T 1xi9_A 112 EALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYG------------GKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA 179 (406)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEeecCCCcCCcCCHHHHHHhhCcCceEEE
Confidence 99997 56778999999999999999999988888 47777887653343333221 24789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcc-eEEEecccccccccccceeee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEV-AIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-vi~i~S~sK~~~~~G~r~G~l 289 (433)
+++|+||||.+++.+++++|+++|++||++||+||+|+++.+++.+.++..++ .++ +++++||||++|++|+|+||+
T Consensus 180 i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~ 257 (406)
T 1xi9_A 180 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT--KDVPVIVMNGLSKVYFATGWRLGYM 257 (406)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC--SSSCEEEEEESTTTTCCGGGCCEEE
T ss_pred EECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC--CCceEEEEeccccccCCCccEEEEE
Confidence 99999999999999999999999999999999999999987754455666664 567 899999999999899999999
Q ss_pred e--ccc----cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe
Q 045431 290 V--IPK----ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK 362 (433)
Q Consensus 290 ~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 362 (433)
+ +++ +++ +.+....... .+++.+.|.++.++++.. .+++++++++++++++.+.+.|+++ |+.
T Consensus 258 ~~~~~~~~~~~l~--------~~l~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 327 (406)
T 1xi9_A 258 YFVDPENKLSEVR--------EAIDRLARIR-LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGIS 327 (406)
T ss_dssp EEECTTCTTHHHH--------HHHHHHHHHT-CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred EEecCchhHHHHH--------HHHHHHHHhh-cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 9 887 664 5565544443 567889999888888533 4557889999999999999999988 888
Q ss_pred eecCCCccEEEEECC---CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 363 VYGGKNAPYVWVQFP---GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 363 ~~~~~~g~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..+.+++++|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~l~~~l 400 (406)
T 1xi9_A 328 TTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFM 400 (406)
T ss_dssp CCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred eecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 877778899999887 3466777777775669999999988755568999999888999999999998875
No 29
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.3e-44 Score=351.54 Aligned_cols=341 Identities=20% Similarity=0.282 Sum_probs=282.8
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.|.++++.|+.+.+++ +.+.. ....|++..|..++|+++++++.+ ++++++++|++|+|+++++
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENKP-----EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTCC-----SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHhc-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 457999999999877888899999 77742 245788888999999999999975 5557889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcc--cCCCC--CCCccEEEEcCC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFF--PDLST--VARTDIIFFCSP 214 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~l~~p 214 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.++++++. .++++ .+++++|++++|
T Consensus 116 ~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p 183 (409)
T 2gb3_A 116 LFSFAVIANPGDEILVLEPFYANYNAFAKIAG------------VKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNP 183 (409)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHHHHHHHT------------CEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESS
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCC
Confidence 97 57778999999999999999999998888 478888887533433 22332 247899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc-
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK- 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~- 293 (433)
+||||.+++.+++++|+++|++||++||+||+|+++.+.+.+.++ +.+..+++++++||||++|++|+|+||+++++
T Consensus 184 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 261 (409)
T 2gb3_A 184 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSIESDKVVVIDSVSKKFSACGARVGCLITRNE 261 (409)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--cccCCCCEEEEecchhccCCccceEEEEEECcH
Confidence 999999999999999999999999999999999988776544443 22224568999999999999999999999998
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee-ecCCCccEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV-YGGKNAPYV 372 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~g~~~ 372 (433)
+++ +.+........ +++.+.|.++.++++. +..++++++++++++++.+.+.|+++|+.+ ..+.+++++
T Consensus 262 ~l~--------~~l~~~~~~~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 331 (409)
T 2gb3_A 262 ELI--------SHAMKLAQGRL-APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYI 331 (409)
T ss_dssp HHH--------HHHHHHHHHSC-CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEE
T ss_pred HHH--------HHHHHHHhccC-CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEE
Confidence 774 56665555444 6889999999999974 456789999999999999999999888888 777789999
Q ss_pred EEECCCCChHHHHHHHHHc-----CCeEecCCCCCCC---CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGRSSWDVFSEILEK-----THVVTTPGSGFGP---GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~-----~gi~v~~g~~f~~---~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|+++++.+..++...++++ +||.+.||..|+. .+++++||++..+++++++++++|++++
T Consensus 332 ~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l 399 (409)
T 2gb3_A 332 TAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGL 399 (409)
T ss_dssp EEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999855667777777766 5999999988864 3468999998889999999999998875
No 30
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=3.9e-45 Score=353.09 Aligned_cols=344 Identities=17% Similarity=0.243 Sum_probs=287.0
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
.++++|+|+.|++++++|+.+.+++.+.+.+ ....|++. ..++++++++++.+ ++.+++++|++|+|++++
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a 97 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASMEEKLKV-----AAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPA 97 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHHHHHTT-----CCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHH
T ss_pred cCCCceeccccCCCCCCCHHHHHHHHHHHhc-----CcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHH
Confidence 3557999999999999999999999998863 34567554 79999999999986 555789999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc-cCCcccCCC---C---CCCccEEE
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA-ENGFFPDLS---T---VARTDIIF 210 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~---~~~~~~i~ 210 (433)
+.+ +..++++||+|++++|+|+++...++..| .+++.++.+. ++.+..+++ + .+++++|+
T Consensus 98 ~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~ 165 (391)
T 3dzz_A 98 ISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNG------------RRVISSDLIYENSKYSVNWADLEEKLATPSVRMMV 165 (391)
T ss_dssp HHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTT------------CEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcC------------CEEEEeeeeecCCceeecHHHHHHHHhccCceEEE
Confidence 997 67788999999999999999999999888 4788888753 222223322 1 26889999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-CCcceEEEecccccccccccceee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
+++||||||.++|.+++++|+++|++||+++|+||+|+++.+.+. +.++..+.. ..++++++.|+||.+|++|+|+||
T Consensus 166 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~ 245 (391)
T 3dzz_A 166 FCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAAC 245 (391)
T ss_dssp EESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEE
T ss_pred EECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheE
Confidence 999999999999999999999999999999999999999887763 556666542 257899999999999999999999
Q ss_pred eecc-ccccccCCcchhHHHHHHHh-hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeee
Q 045431 289 TVIP-KELLFSDGFPVAKDFNRIVC-TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVY 364 (433)
Q Consensus 289 l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~ 364 (433)
++++ ++++ +.+..... ....+++.++|.++.++++. ...++++.+++++++++.+.+.|+++ |+.+.
T Consensus 246 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 316 (391)
T 3dzz_A 246 AIIPNPDLR--------ARAEESFFLAGIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVL 316 (391)
T ss_dssp EECCSHHHH--------HHHHHHHHHHTCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC
T ss_pred EEECCHHHH--------HHHHHHHHhhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 9998 5553 55655433 33456788889888888874 45678999999999999999999984 89998
Q ss_pred cCCCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 365 GGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 ~~~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+.+++++|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 386 (391)
T 3dzz_A 317 DSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGV 386 (391)
T ss_dssp CCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 8888999999998 3577788888875669999999999877789999999889999999999999876
No 31
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=7e-45 Score=351.30 Aligned_cols=344 Identities=19% Similarity=0.289 Sum_probs=285.3
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
+.++|+|+.|++++++|+.+.+++.+.+.+ ....|++ +..++++++++++.+ ++.+++++|++|+|+++++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~ 103 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLEQ-----EIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAI 103 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHTT-----CCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhC-----CCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHH
Confidence 357899999999999999999999998863 3446644 679999999999987 4447899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC--ccCCcccCCCC----CCCccEEEEc
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT--AENGFFPDLST----VARTDIIFFC 212 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~i~l~ 212 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+ .++.+..+++. ..++++|+++
T Consensus 104 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~ 171 (391)
T 4dq6_A 104 SLLINELTKANDKIMIQEPVYSPFNSVVKNNN------------RELIISPLQKLENGNYIMDYEDIENKIKDVKLFILC 171 (391)
T ss_dssp HHHHHHHSCTTCEEEECSSCCTHHHHHHHHTT------------CEEEECCCEECTTSCEECCHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcC------------CeEEeeeeeecCCCceEeeHHHHHHHhhcCCEEEEE
Confidence 97 57788999999999999999999999888 478888876 33333344322 1228899999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-CCcceEEEecccccccccccceeeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+||||||.+++.+++++|+++|++||+++|+||+|+++.+.+. +.++..++. ..+++++++|+||.+|++|+|+||++
T Consensus 172 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 251 (391)
T 4dq6_A 172 NPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVV 251 (391)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEE
Confidence 9999999999999999999999999999999999999888764 445555532 13678999999999999999999999
Q ss_pred ccc-cccccCCcchhHHHHHHHhh-ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeeecC
Q 045431 291 IPK-ELLFSDGFPVAKDFNRIVCT-CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVYGG 366 (433)
Q Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~ 366 (433)
+++ +++ +.+...... ...+++.++|.++.++++. ..+++++.+++++++++.+.+.|+++ |+.+..+
T Consensus 252 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 322 (391)
T 4dq6_A 252 LPDEKDY--------KLLDDAFTRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRKP 322 (391)
T ss_dssp CCSHHHH--------HHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCC
T ss_pred eCCHHHH--------HHHHHHHHhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCC
Confidence 987 553 556555432 3446788999988888874 34678999999999999999999984 8999888
Q ss_pred CCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 367 KNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 367 ~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 323 EGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp SBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred CccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 88999999998 45777888887776699999999998777899999998899999999999999874
No 32
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.3e-45 Score=358.93 Aligned_cols=353 Identities=17% Similarity=0.133 Sum_probs=285.8
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~a 138 (433)
+++++|+|+.|++++++++.+.+++.+.+.. .....|++..|..++|+++++++.+ ++.+++++|++|+|++++
T Consensus 42 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~a 117 (437)
T 3g0t_A 42 TGTKFCRMEMGVPGLPAPQIGIETEIQKLRE----GVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQG 117 (437)
T ss_dssp HTCCCEECCCCSCCSCCCHHHHHHHHHHHHH----TGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred cCCCEEeccCcCCCCCCCHHHHHHHHHHHhC----CcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHH
Confidence 3457999999999999999999999998864 2236898888999999999999974 666789999999999999
Q ss_pred HHH-HHHhc--CCCC--EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC---CC---CCCcc
Q 045431 139 ISR-LQIVF--GSNV--TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL---ST---VARTD 207 (433)
Q Consensus 139 l~~-l~~l~--~~gd--~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~ 207 (433)
+.+ +..++ ++|| +|++++|+|.++...++..| .+++.++.+++ ++..++ ++ .++++
T Consensus 118 l~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~ 184 (437)
T 3g0t_A 118 CFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILG------------QKFESFDLFEY-RGEKLREKLESYLQTGQFC 184 (437)
T ss_dssp HHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHT------------CCCEEEEGGGG-CTTHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcC------------CEEEEEeecCC-CCccCHHHHHHHHhcCCce
Confidence 997 57777 9999 99999999999999999998 47778887633 332222 11 36789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc-------cccCCCCcceEEEeccccccc
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI-------FEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~-------~~~~~~~~~vi~i~S~sK~~~ 280 (433)
+|++++||||||.+++.+++++|+++|++||++||+||+|+++.+++ ..++ ..++...+++++++|+||.+|
T Consensus 185 ~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 263 (437)
T 3g0t_A 185 SIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVANYTDNYILALSSSKAFS 263 (437)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTTSSCCCCCGGGTCSCEEEEEESTTTTS
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCcccccchhhccCCCCCcEEEEEcCccCCC
Confidence 99999999999999999999999999999999999999999877763 2223 444433578899999999999
Q ss_pred ccccceeeeeccccccccCCcchhHH----------HHHHHhhccCCCcHHHHHHHHHhcCcCC--hhHHHHHHHHHHHH
Q 045431 281 FTGVRLGWTVIPKELLFSDGFPVAKD----------FNRIVCTCFNGASNISQAGGLACLSPEG--FKAVHEVIGFYKEN 348 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~ 348 (433)
++|+|+||++++++++.+....+... +.+.......+++.++|.++.++++... ..++++.+++++++
T Consensus 264 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 343 (437)
T 3g0t_A 264 YAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRK 343 (437)
T ss_dssp CGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred CccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHH
Confidence 99999999999988752000000000 4444444556689999999998887432 12378999999999
Q ss_pred HHHHHHHHhhcCCeee-------cCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhH
Q 045431 349 TDIIVETFNSLGFKVY-------GGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGN 420 (433)
Q Consensus 349 ~~~l~~~l~~~g~~~~-------~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~ 420 (433)
++.+.+.|+++|+.+. ++.+++|+|+++++.+..++...|.++ ||.+.||..|+...++++||++.. ++++
T Consensus 344 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~iRis~~~~~~e~ 422 (437)
T 3g0t_A 344 ARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRY-GMCAITLKTTGSKRNEAMRICTSLLPESQ 422 (437)
T ss_dssp HHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHT-TEECEESTTTTCCCTTCEEEECSSSCGGG
T ss_pred HHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHc-CeEEeeccccCCCCCCEEEEEEecCCHHH
Confidence 9999999999998887 437899999999866777888887765 999999998876555889999865 8999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 423 i~~~~~~l~~~~ 434 (437)
T 3g0t_A 423 FPDLEKRLQMLN 434 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 33
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=9.8e-45 Score=353.34 Aligned_cols=346 Identities=19% Similarity=0.289 Sum_probs=278.4
Q ss_pred CceEEecCCCC----CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHh-------c-cCCCCCCcEE
Q 045431 63 AEVISLGIGDT----TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY-------K-DLGIEEGDIF 130 (433)
Q Consensus 63 ~~~i~l~~g~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~-------~-~~~~~~~~i~ 130 (433)
.++|+|+.|.| ++++++.+.+++.+.+.. .....|++..|..+||+++|+++. + ++.+++++|+
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~ 108 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS----QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV 108 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT----TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhC----CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEE
Confidence 46899999986 467889999999998864 234578878899999999999997 3 4457889999
Q ss_pred EcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CC
Q 045431 131 VSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VA 204 (433)
Q Consensus 131 ~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 204 (433)
+|+|+++++.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+.++..+++. .+
T Consensus 109 ~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~ 176 (416)
T 1bw0_A 109 LCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYG------------IGMHFYNCRPENDWEADLDEIRRLKDD 176 (416)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcC------------cEEEEeecCcccCCCCCHHHHHHHhcc
Confidence 99999999997 57778999999999999999999888888 47777777654333333321 24
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-----CCcccccCCCCcceEEEecccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-----PRSIFEIPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-----~~~~~~~~~~~~~vi~i~S~sK~~ 279 (433)
+++++++++|+||||.+++.+++++|+++|++||++||+||+|+++.+++. ..++..++. .+++++++||||.+
T Consensus 177 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~ 255 (416)
T 1bw0_A 177 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET-TVPRVILGGTAKNL 255 (416)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCC-SCCEEEEEESTTTT
T ss_pred CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccC-CCcEEEEecchhhC
Confidence 678999999999999999999999999999999999999999999877653 334544432 34689999999999
Q ss_pred cccccceeeeecccc--ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHh
Q 045431 280 GFTGVRLGWTVIPKE--LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 280 ~~~G~r~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 357 (433)
+++|+|+||++++++ ++. .+...+... .....+++.++|.++.++++.....++++.+++++++++++.+.|+
T Consensus 256 ~~~Glr~G~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (416)
T 1bw0_A 256 VVPGWRLGWLLYVDPHGNGP----SFLEGLKRV-GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG 330 (416)
T ss_dssp SCGGGCCEEEEEECTTCSCH----HHHHHHHHH-HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEEeeCchhhHH----HHHHHHHHH-hccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999874 430 011122222 1124457899999999998754456788999999999999999999
Q ss_pred hc-CCeeecCCCccEEEEECCC------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 358 SL-GFKVYGGKNAPYVWVQFPG------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 358 ~~-g~~~~~~~~g~~~~~~~~~------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
++ |+.+..+.+|+|+|+.++. .+..++...+++++||.+.||..|+. ++++||++..+++++++++++|.+
T Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~~~~e~l~~~l~~l~~ 408 (416)
T 1bw0_A 331 ECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTTRPVEVYREAVERIKA 408 (416)
T ss_dssp TSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHH
T ss_pred hCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEecCCHHHHHHHHHHHHH
Confidence 88 8888777789999999862 35667777777667999999998863 579999998889999999999988
Q ss_pred hh
Q 045431 431 LY 432 (433)
Q Consensus 431 ~l 432 (433)
++
T Consensus 409 ~l 410 (416)
T 1bw0_A 409 FC 410 (416)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 34
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=100.00 E-value=1.9e-45 Score=354.56 Aligned_cols=335 Identities=16% Similarity=0.151 Sum_probs=254.8
Q ss_pred CCceEEecCCCC---C--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCc--EEEc
Q 045431 62 DAEVISLGIGDT---T--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGD--IFVS 132 (433)
Q Consensus 62 ~~~~i~l~~g~~---~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~--i~~~ 132 (433)
.+++|+|+.|.+ + .++++.+.++.. .+... ...++|++..|.++||+++++|+.+ +..+++++ |++|
T Consensus 28 ~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t 103 (405)
T 3k7y_A 28 CEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTEN---YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQC 103 (405)
T ss_dssp CSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHH---CCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEE
T ss_pred CcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCC---CCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEc
Confidence 357899999973 2 345778888776 43111 4567899999999999999999975 33345664 5999
Q ss_pred CChHHHHHHH-HHhcC--CCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-------
Q 045431 133 DGAKCDISRL-QIVFG--SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------- 202 (433)
Q Consensus 133 ~G~~~al~~l-~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 202 (433)
+|+++++.++ ..++. | |+|++++|+|++|...++.+| .+++.++..+++++..+++.
T Consensus 104 ~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~ 170 (405)
T 3k7y_A 104 IGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRG------------FNLKYINFFDYNLIDINYDLFLNDLRN 170 (405)
T ss_dssp EHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTT------------CEEEEECCEETTTTEECHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcC------------CeEEEEeccccccCCcCHHHHHHHHHh
Confidence 9999999984 56666 8 999999999999999999999 47888887433334444332
Q ss_pred CCCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC---CCcccccCCCCcceEEEeccccc
Q 045431 203 VARTDIIFFCSP-NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN---PRSIFEIPGAKEVAIETSSFSKY 278 (433)
Q Consensus 203 ~~~~~~i~l~~p-~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~vi~i~S~sK~ 278 (433)
.++++++++++| |||||.+++.+++++|+++|++|+++||+||+|.++.+++. ..++..+....+++|+++||||+
T Consensus 171 ~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 250 (405)
T 3k7y_A 171 IPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKN 250 (405)
T ss_dssp SCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTT
T ss_pred CCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCcc
Confidence 235678888755 99999999999999999999999999999999999887632 12333333335689999999999
Q ss_pred ccccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHHH
Q 045431 279 AGFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENTD 350 (433)
Q Consensus 279 ~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~ 350 (433)
|+++|+|+||+++ +++++. ++...+..........++.++|.++.+++.+.. .++++.+++.++++++
T Consensus 251 ~~l~GlRiG~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~ 326 (405)
T 3k7y_A 251 MSLYGERAGALHIVCKNQEEKK----IVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRI 326 (405)
T ss_dssp SCCTTTTEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccceEEEEEeCCHHHHH----HHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 333320 011222323333444567899998888887532 2457788889999999
Q ss_pred HHHHHHh----hcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHH
Q 045431 351 IIVETFN----SLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNV 421 (433)
Q Consensus 351 ~l~~~l~----~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l 421 (433)
.+.+.|+ ++| +.+..|++|+|+|+.++. +++..+ +++||.+.||. |||++. +++++
T Consensus 327 ~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~----~~~~~L-~~~gV~v~p~~----------Ris~a~~~~~~i 391 (405)
T 3k7y_A 327 LFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA----KIAEHL-KTHHIYIINNG----------RINVSGITKNNV 391 (405)
T ss_dssp HHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----GGTTTT-TTTTEECCTTS----------EEEGGGCCTTHH
T ss_pred HHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----HHHHHH-HHCCEeecCCC----------eEEEeccCHHHH
Confidence 9999999 776 577888999999998863 344566 78899999852 999865 89999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 392 ~~~~~~i~~~~ 402 (405)
T 3k7y_A 392 DYIADKICLSL 402 (405)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 35
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=100.00 E-value=2.2e-45 Score=358.69 Aligned_cols=341 Identities=19% Similarity=0.284 Sum_probs=267.9
Q ss_pred CceEEecCCCCCCCChHH-HHH-HH---------HHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCC----
Q 045431 63 AEVISLGIGDTTEPIPEV-ITS-AL---------AKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIE---- 125 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~-~~~-a~---------~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~---- 125 (433)
+++|+|+.|.|+...++. .+. ++ .+.. ....+|++..|.++||+++++++.+ +...+
T Consensus 31 ~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~ 104 (425)
T 2r2n_A 31 KSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMM------KRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPP 104 (425)
T ss_dssp TTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHH------HHHTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCG
T ss_pred CCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccch------hhhcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccc
Confidence 358999999997443221 110 00 0111 1124788899999999999999976 44442
Q ss_pred ---CCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-C
Q 045431 126 ---EGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-L 200 (433)
Q Consensus 126 ---~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (433)
+++|++|+|+++++.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ +++.+ +
T Consensus 105 ~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l 171 (425)
T 2r2n_A 105 SQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG------------CNIINVASDES-GIVPDSL 171 (425)
T ss_dssp GGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGT------------CEEEEECEETT-EECHHHH
T ss_pred cCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEEeCcCCC-CCCHHHH
Confidence 3799999999999997 57788999999999999999999988888 47777777543 22221 2
Q ss_pred CC--------------CCCccEEEE-cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC
Q 045431 201 ST--------------VARTDIIFF-CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG 264 (433)
Q Consensus 201 ~~--------------~~~~~~i~l-~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~ 264 (433)
++ .+++++|++ ++||||||.++|.+++++|+++|++||++||+||+|+++.+.+. +.++.+++.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 251 (425)
T 2r2n_A 172 RDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDV 251 (425)
T ss_dssp HHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCT
T ss_pred HHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCC
Confidence 11 135788877 48999999999999999999999999999999999999888654 456667653
Q ss_pred CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC---C-hhHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE---G-FKAVHE 340 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~-~~~~~~ 340 (433)
.+++++++||||+++ +|+|+||++++++++ +.+.........+++.++|.++.++++.. . .+++++
T Consensus 252 -~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~--------~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 321 (425)
T 2r2n_A 252 -DGRVIRADSFSKIIS-SGLRIGFLTGPKPLI--------ERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDR 321 (425)
T ss_dssp -TSCEEEEEESTTTTC-STTCCEEEEEEHHHH--------HHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEccchhhcc-CccceEEEecCHHHH--------HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHH
Confidence 568999999999998 999999999998875 66776666666778999999999998752 2 267889
Q ss_pred HHHHHHHHHHHHHHHHhhc--CC-eeecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCC---CCCeEEEe
Q 045431 341 VIGFYKENTDIIVETFNSL--GF-KVYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPG---GEGFIRVS 413 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~--g~-~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~---~~~~iRi~ 413 (433)
+++.++++++.+.+.|+++ |+ .+..|.+|+|+|++++. .+..+++...+.++||.+.||..|+.. +.+++||+
T Consensus 322 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis 401 (425)
T 2r2n_A 322 VIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRAS 401 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEE
Confidence 9999999999999999985 76 46667899999999984 345554444455679999999998743 35799999
Q ss_pred ec-cChhHHHHHHHHHHHhh
Q 045431 414 AF-GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 414 ~~-~~~~~l~~~l~~l~~~l 432 (433)
++ .+++++++++++|++++
T Consensus 402 ~~~~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 402 FSSASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp CSSCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 86 69999999999999876
No 36
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.2e-45 Score=360.34 Aligned_cols=371 Identities=17% Similarity=0.148 Sum_probs=269.9
Q ss_pred CCChhhHHHHHhccccccccccCCCCCCcHHHHHHHHHHHhcCCCCceEEecCCCCC---CCChHHHHHHHHHHHhhccc
Q 045431 18 AAPQEEKIAYKTKVSRNGNLGKLQAGYLFPEIARRKAAHMLKYPDAEVISLGIGDTT---EPIPEVITSALAKRSYALST 94 (433)
Q Consensus 18 ~LPs~r~la~~~~vs~~t~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~---~~~~~~~~~a~~~~~~~~~~ 94 (433)
.|||.|..++.+..+.++++.+.. ... . .+ .+|+|+.|.|+ +++|+.+.+++.+.+... .
T Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~---------~l~----~--~~-~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~-~ 65 (422)
T 3d6k_A 3 AMSLKDYDAARLAQVREEVTAKYA---------ELK----A--KN-LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTK-D 65 (422)
T ss_dssp ---------------CHHHHHHHH---------HHH----H--TT-CCEECCCCSCCHHHHHTTGGGGGCSTTCCBCT-T
T ss_pred cccccCCCHHHHHhhHHHHHHHHH---------HHh----c--cC-CeEeCCCCCCChhhCCCcHHHHHHHHHHHhhc-c
Confidence 589999999999998877553211 111 1 11 37999999998 777777777766542110 0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH--HHH-HHhcCC------------CCEEEEeCCCC
Q 045431 95 QEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI--SRL-QIVFGS------------NVTMAVQDPSY 159 (433)
Q Consensus 95 ~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al--~~l-~~l~~~------------gd~Vl~~~p~~ 159 (433)
.....+|++..|.++||+++|+|+ ++++++|++|+|+++++ .++ ..++.+ +|+|++++|+|
T Consensus 66 ~~~~~~Y~~~~G~~~lr~~ia~~~----~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y 141 (422)
T 3d6k_A 66 GVDCRNYGGLLGIADIRELWAEAL----GLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGY 141 (422)
T ss_dssp CCBTTSSCCSSCCHHHHHHHHHHH----TCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCC
T ss_pred chhhhCCCCCCCCHHHHHHHHHHh----CCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCcc
Confidence 023568999999999999999998 78899999999999987 554 455555 34899999999
Q ss_pred hhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C-CCccEEE-EcCCCCccccCCCHHHHHHHHHHH
Q 045431 160 PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V-ARTDIIF-FCSPNNPTGAAATREQLTRLVQFA 234 (433)
Q Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~i~-l~~p~nPtG~~~~~~~~~~i~~~a 234 (433)
+++...++..| .+++.++.+.+ +++.+ +++ . .++++|+ +++||||||.+++.+++++|+++|
T Consensus 142 ~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~ 208 (422)
T 3d6k_A 142 DRHFTITEHFG------------FEMINVPMTDE-GPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMS 208 (422)
T ss_dssp HHHHHHHHHHT------------CEEEEEEEETT-EECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCC
T ss_pred HHHHHHHHHcC------------CEEEecCCCCC-CCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999 47888887654 33222 221 2 3688888 579999999999999999999999
Q ss_pred H-HcCCEEEEeccccc--cccCCC-CCccccc---CCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHH
Q 045431 235 K-DNGSIIVYDSAYAL--YISDDN-PRSIFEI---PGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDF 307 (433)
Q Consensus 235 ~-~~~~~li~De~~~~--~~~~~~-~~~~~~~---~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~ 307 (433)
+ +||++||+||+|++ +..++. ..++..+ .+..+++++++||||+ +++|+|+||++++++++ +.+
T Consensus 209 ~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~l~--------~~l 279 (422)
T 3d6k_A 209 TAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSKENI--------EWY 279 (422)
T ss_dssp CSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCHHHH--------HHH
T ss_pred hhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCHHHH--------HHH
Confidence 9 99999999999986 444332 2344332 1235789999999999 56999999999998875 667
Q ss_pred HHHHhhccCCCcHHHHHHHHHhcCcCC-h-hHHHHHHHHHHHHHHHHHHHHhh----cC-CeeecCCCccEEEEECCCCC
Q 045431 308 NRIVCTCFNGASNISQAGGLACLSPEG-F-KAVHEVIGFYKENTDIIVETFNS----LG-FKVYGGKNAPYVWVQFPGRS 380 (433)
Q Consensus 308 ~~~~~~~~~~~~~~~q~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~l~~~l~~----~g-~~~~~~~~g~~~~~~~~~~~ 380 (433)
.........+++.++|.++.+++++.+ . ++++++++.++++++.+.+.|.+ .| +.+..|.+|+|+|++++..+
T Consensus 280 ~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~ 359 (422)
T 3d6k_A 280 ASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGT 359 (422)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTC
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCC
Confidence 766666666789999999999998622 2 57888999999999998888865 33 67677789999999998544
Q ss_pred hHHHHHHHHHcCCeEecC-CCCCC--C-CCCCeEEEeec-cChhHHHHHHHHHHHhh
Q 045431 381 SWDVFSEILEKTHVVTTP-GSGFG--P-GGEGFIRVSAF-GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 381 ~~~~~~~l~~~~gi~v~~-g~~f~--~-~~~~~iRi~~~-~~~~~l~~~l~~l~~~l 432 (433)
...+ ..+++++||.+.| |..|. . .+++++||++. .+++++++++++|++++
T Consensus 360 ~~~~-~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l 415 (422)
T 3d6k_A 360 ASRV-VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCV 415 (422)
T ss_dssp HHHH-HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4444 4556677999999 55564 1 24689999987 59999999999999875
No 37
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.5e-45 Score=361.16 Aligned_cols=333 Identities=19% Similarity=0.280 Sum_probs=262.3
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc---cCCCCCCcEEEcCChHHHHHH-HHHhcCCCC---
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK---DLGIEEGDIFVSDGAKCDISR-LQIVFGSNV--- 150 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~---~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd--- 150 (433)
|..+++++.+++..... .....|++..|.++||+++++|+.+ ++.+++++|++|+|+++++.+ +..++++||
T Consensus 103 P~~~~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~ 181 (498)
T 3ihj_A 103 PEDAKKRARRILQACGG-NSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSR 181 (498)
T ss_dssp CHHHHHHHHHHHHHC-----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGS
T ss_pred CHHHHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCC
Confidence 66677777777765321 2456899999999999999999975 366789999999999999997 577788875
Q ss_pred -EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----C-----CccEEEEcCCCCccc
Q 045431 151 -TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----A-----RTDIIFFCSPNNPTG 219 (433)
Q Consensus 151 -~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~i~l~~p~nPtG 219 (433)
.|+++.|+|+.+...+...| ..++.++++.++++..+++.. + ++++|+++|||||||
T Consensus 182 d~Vlv~~p~y~~~~~~~~~~g------------~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG 249 (498)
T 3ihj_A 182 TGVMIPIPQYPLYSAVISELD------------AIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG 249 (498)
T ss_dssp EEEEEEESCCTHHHHHHHHTT------------CEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTC
T ss_pred CEEEEeCCCchhHHHHHHHcC------------CEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCC
Confidence 99999999999999999998 488888888776665554321 1 589999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCC-------CCcceEEEecccccc-cccccceeee
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPG-------AKEVAIETSSFSKYA-GFTGVRLGWT 289 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~-------~~~~vi~i~S~sK~~-~~~G~r~G~l 289 (433)
.++|.+++++|+++|++||++||+||+|+++.+++. +.++..+.. ...++|+++||||.+ |++|+|+||+
T Consensus 250 ~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~ 329 (498)
T 3ihj_A 250 QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYM 329 (498)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEE
T ss_pred CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEE
Confidence 999999999999999999999999999999888753 455554311 123579999999999 7899999999
Q ss_pred e---ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC-----Ch----hHHHHHHHHHHHHHHHHHHHHh
Q 045431 290 V---IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE-----GF----KAVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 290 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-----~~----~~~~~~~~~~~~~~~~l~~~l~ 357 (433)
+ .+++++ +.+..... ...+++.+.|.++..++... .. ++.+++++.++++++.+.+.|+
T Consensus 330 ~~~~~~~~l~--------~~l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 400 (498)
T 3ihj_A 330 EVINLHPEIK--------GQLVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN 400 (498)
T ss_dssp EEESCCHHHH--------HHHHHHHH-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCHHHH--------HHHHHHHh-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 466664 55655544 45567899999888888741 11 2356778899999999999999
Q ss_pred hc-CCeeecCCCccEEEEECC------------CCChHHH-HHHHHHcCCeEecCCCCCCC-CCCCeEEEeeccChhHHH
Q 045431 358 SL-GFKVYGGKNAPYVWVQFP------------GRSSWDV-FSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFGHRGNVL 422 (433)
Q Consensus 358 ~~-g~~~~~~~~g~~~~~~~~------------~~~~~~~-~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~~~~~l~ 422 (433)
++ |+.+.++.+++|+|+++. +....++ +..+++++||.+.||+.|+. .+++++|+++..++++++
T Consensus 401 ~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~ 480 (498)
T 3ihj_A 401 QVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLK 480 (498)
T ss_dssp TSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHH
T ss_pred cCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHH
Confidence 98 999999999999998764 2233443 56777778999999999984 567899999988899999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
+++++|++++
T Consensus 481 ~~i~~L~~~~ 490 (498)
T 3ihj_A 481 TVLQKVKDFH 490 (498)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 38
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=1.6e-44 Score=349.94 Aligned_cols=342 Identities=16% Similarity=0.201 Sum_probs=278.8
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~ 140 (433)
+++|+|+.+++++++|+.+.+++.+.+.. ....|++. ..++|+++++++.+ ++.+++++|++|+|+++++.
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~ 103 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDE-----TVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF 103 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHH-----CCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhc-----CCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHH
Confidence 36899999999888899999999998863 23567553 89999999999975 55578899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccCCC---C---CCCccEEEEc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPDLS---T---VARTDIIFFC 212 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~---~~~~~~i~l~ 212 (433)
+ +..++++||+|++++|+|+++...+...| .+++.++.++++ .+..+++ + .+++++|+++
T Consensus 104 ~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~ 171 (399)
T 1c7n_A 104 NAVREFTKPGDGVIIITPVYYPFFMAIKNQE------------RKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFC 171 (399)
T ss_dssp HHHHHHCCTTCEEEECSSCCTHHHHHHHTTT------------CEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEE
T ss_pred HHHHHhcCCCCEEEEcCCCcHhHHHHHHHcC------------CEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEc
Confidence 7 57778999999999999999999888888 477777775332 2223322 1 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-CCcceEEEecccccccccccceeeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+||||||.++|.+++++|+++|++||+++|+||+|+++.+++. +.++..++. ..+++++++|+||++|++|+|+||++
T Consensus 172 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 251 (399)
T 1c7n_A 172 SPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII 251 (399)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEE
Confidence 9999999999999999999999999999999999999887653 445655531 13578999999999998999999999
Q ss_pred ccc-cccccCCcchhHHHHHHHhhcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-c-CCeeecC
Q 045431 291 IPK-ELLFSDGFPVAKDFNRIVCTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-L-GFKVYGG 366 (433)
Q Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~ 366 (433)
+++ +++ +.+........ .+++.++|.++.++++.. .+++++.+++++++++.+.+.|++ + |+.+..+
T Consensus 252 ~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 322 (399)
T 1c7n_A 252 IKNPDIR--------ERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI 322 (399)
T ss_dssp CCCHHHH--------HHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC
T ss_pred ECCHHHH--------HHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecC
Confidence 975 453 55655544432 257899999888888743 567899999999999999999998 5 8888888
Q ss_pred CCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 367 KNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 ~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+++++|++++. .+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l 390 (399)
T 1c7n_A 323 EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKAL 390 (399)
T ss_dssp SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHH
Confidence 788899999973 466777777776679999999988755678999999888899999999998875
No 39
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=4e-44 Score=344.94 Aligned_cols=333 Identities=23% Similarity=0.371 Sum_probs=274.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++|+|+.|.++++.|+.+.+++.+++.+ ...|++..|..+||+++++++ ++++++|++|+|+++++.+ +
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~~----~~~~~~v~~~~g~~~a~~~~~ 95 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALGR------QDQYAPPAGLPALREALAEEF----AVEPESVVVTSGATEALYVLL 95 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTT------SCSCCCTTCCHHHHHHHHHHH----TSCGGGEEEESSHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHH------hcCCCCCCCCHHHHHHHHHhc----CCChhhEEEcCChHHHHHHHH
Confidence 4799999999888899999999998753 346877779999999999997 7888999999999999997 5
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC--ccCCcccC---CCC--CCCccEEEEcCCC
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT--AENGFFPD---LST--VARTDIIFFCSPN 215 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~--~~~~~~i~l~~p~ 215 (433)
..++++||+|++++|+|+++...++..| .+++.++.+ ++ ++..+ +++ .+++++|++++||
T Consensus 96 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~ 162 (381)
T 1v2d_A 96 QSLVGPGDEVVVLEPFFDVYLPDAFLAG------------AKARLVRLDLTPE-GFRLDLSALEKALTPRTRALLLNTPM 162 (381)
T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEEETT-EEECCHHHHHTTCCTTEEEEEEESSC
T ss_pred HHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEeCCCCCc-cCCcCHHHHHHhcCcCCEEEEECCCC
Confidence 6778999999999999999998888888 477777775 22 12222 222 2578999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
||||.+++.+++++|+++|++||+++|+||+|+++.++..+.++..+ ..+++++++|+||++|++|+|+||+++++++
T Consensus 163 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~ 240 (381)
T 1v2d_A 163 NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF--APERTFTVGSAGKRLEATGYRVGWIVGPKEF 240 (381)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh--cCCCEEEEeechhhcCCcccceEEEEeCHHH
Confidence 99999999999999999999999999999999988773224455554 2467899999999999899999999999887
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-hhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-FKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWV 374 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~ 374 (433)
+ +.+.........+.+.+.|.++.++++... .+++++++++++++++++.+.|++.|+.+..+.+|+|+|+
T Consensus 241 ~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 312 (381)
T 1v2d_A 241 M--------PRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMA 312 (381)
T ss_dssp H--------HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEE
T ss_pred H--------HHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCcceEEEE
Confidence 5 566655555556678899988888887332 3567889999999999999999999999888878899999
Q ss_pred ECCCCChHHHHHHHHHcCCeEecCCCCCCC--CCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGP--GGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+++..+ +..+++++||.+.||..|+. .+.+++||++..+++++++++++|+++++
T Consensus 313 ~~~~~~----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~ 369 (381)
T 1v2d_A 313 ELPGWD----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVN 369 (381)
T ss_dssp ECTTCC----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred ecChHh----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 998542 55566677999999998864 34689999987799999999999998763
No 40
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=3.3e-44 Score=350.04 Aligned_cols=344 Identities=19% Similarity=0.277 Sum_probs=287.0
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al 139 (433)
++++|+|+.++++++.|+.+.+++.+.+.. ....|++ ...++++++++++.+ ++.+++++|++|+|+++++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~--~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~ 132 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGRE-----HIFGYNY--FNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAI 132 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHH-----CCSSCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhc-----CCcCCCC--CCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHH
Confidence 567999999999999999999999998864 3346654 348999999999986 5557899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC-ccCCcccCCCC-----C-CCccEEEE
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT-AENGFFPDLST-----V-ARTDIIFF 211 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~-~~~~~i~l 211 (433)
.+ +..++++||+|++++|+|+++...+...| .+++.++.+ .++.+..+++. . +++++|++
T Consensus 133 ~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil 200 (421)
T 3l8a_A 133 SIALQAFSEKGDAVLINSPVYYPFARTIRLND------------HRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLL 200 (421)
T ss_dssp HHHHHHHSCTEEEEEEEESCCHHHHHHHHHTT------------EEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHhcCCCCEEEECCCCcHHHHHHHHHCC------------CEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEE
Confidence 97 67778999999999999999999999888 477777775 33333334322 1 58999999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCC-CCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++||||||.+++.+++++|+++|++||+++|+||+|+++.+.+. +.++..++. ..++++++.|+||++|++|+|+||+
T Consensus 201 ~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~ 280 (421)
T 3l8a_A 201 CSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFA 280 (421)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEE
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeE
Confidence 99999999999999999999999999999999999999888764 455666542 2467899999999999899999999
Q ss_pred ecc-ccccccCCcchhHHHHHHH-hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecC
Q 045431 290 VIP-KELLFSDGFPVAKDFNRIV-CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGG 366 (433)
Q Consensus 290 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~ 366 (433)
+++ +++. +.+.... .....+.+.+++.++.++++. ..+++++++++++++++.+.+.|+++ ++.+..+
T Consensus 281 ~~~~~~l~--------~~~~~~~~~~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~ 351 (421)
T 3l8a_A 281 IIQNESLR--------RKFQYRQLANNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEP 351 (421)
T ss_dssp ECCSHHHH--------HHHHHHHHHTTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECC
T ss_pred EcCCHHHH--------HHHHHHHHhcccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCC
Confidence 998 5553 5565544 333446889999988888873 45678999999999999999999986 8999888
Q ss_pred CCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 367 KNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 367 ~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++|++++. .+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 352 ~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 352 EGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp SBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 889999999973 4667788888777899999999998777899999998899999999999998864
No 41
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=4.8e-44 Score=345.46 Aligned_cols=338 Identities=17% Similarity=0.256 Sum_probs=274.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHH-HHHHHHHHHhc--cCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKP-LRAAIASTFYK--DLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~-lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~ 140 (433)
++|+|+.+++++++|+.+.+++.+.+.. ....|++. ..+ ||+++++++.+ ++.+++++|++|+|+++++.
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~ 101 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMH-----GVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVS 101 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTT-----CCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhC-----CCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHH
Confidence 6899999999888899999999998752 34577553 778 99999999975 55578899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccCCCC-----C-CCccEEEEc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPDLST-----V-ARTDIIFFC 212 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~-~~~~~i~l~ 212 (433)
+ +..++++||+|++++|+|+++...++..| .+++.++.+.++ .+..+++. . .++++|+++
T Consensus 102 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~ 169 (390)
T 1d2f_A 102 ELIRQWSETGEGVVIHTPAYDAFYKAIEGNQ------------RTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC 169 (390)
T ss_dssp HHHHHSSCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEE
T ss_pred HHHHHhcCCCCEEEEcCCCcHHHHHHHHHCC------------CEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEe
Confidence 7 57778999999999999999999998888 477778876542 23233221 1 378999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCC-cceEEEecccccccccccceeeee
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAK-EVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~-~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+||||||.+++.+++++|+++|++||++||+||+|+++.+++. +.++..++... + + ++||||.+|++|+|+||++
T Consensus 170 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d--~-~~s~sK~~~~~G~r~G~~~ 246 (390)
T 1d2f_A 170 SPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWA--L-LTSGSKSFNIPALTGAYGI 246 (390)
T ss_dssp SSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEE--E-EECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHh--h-ccCccHhhcccChhheEEE
Confidence 9999999999999999999999999999999999999887653 44555553211 3 3 9999999998999999999
Q ss_pred cc-ccccccCCcchhHHHHHHHh-hcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-c-CCeeec
Q 045431 291 IP-KELLFSDGFPVAKDFNRIVC-TCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-L-GFKVYG 365 (433)
Q Consensus 291 ~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~ 365 (433)
++ ++++ +.+..... ... .+++.+.|.++.++++. ..+++++.+++++++++.+.+.|++ + |+.+.+
T Consensus 247 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 317 (390)
T 1d2f_A 247 IENSSSR--------DAYLSALKGRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI 317 (390)
T ss_dssp ECSHHHH--------HHHHHHHHTTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred ECCHHHH--------HHHHHHHhhhcccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEec
Confidence 86 4553 55655444 233 36788999888888874 3467889999999999999999998 5 888887
Q ss_pred CCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 366 GKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+.+++++|++++. .+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l 386 (390)
T 1d2f_A 318 PQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAI 386 (390)
T ss_dssp CSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 7788899999974 466777777775679999999988755578999999888899999999999876
No 42
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.1e-44 Score=353.79 Aligned_cols=345 Identities=18% Similarity=0.306 Sum_probs=278.8
Q ss_pred CCceEEecCCCCCC--CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC-CCCCcEEEcCChH
Q 045431 62 DAEVISLGIGDTTE--PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLG-IEEGDIFVSDGAK 136 (433)
Q Consensus 62 ~~~~i~l~~g~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~-~~~~~i~~~~G~~ 136 (433)
++++|+|+.|.++. .+++.+.+++.+.+.... .....|++..|..+||+++++++.+ ++. +++++|++|+|++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~ 119 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEY--HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 119 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSH--HHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcc--hhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHH
Confidence 45689999998753 367889999998886421 1245788888999999999999975 444 7789999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C--------C
Q 045431 137 CDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V--------A 204 (433)
Q Consensus 137 ~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--------~ 204 (433)
+++.+ +..++++||+|++++|+|+++...++..| .+++.++.+++ +++.+ +++ . .
T Consensus 120 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~ 186 (425)
T 1vp4_A 120 QALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYL------------ANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIK 186 (425)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTT------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEEeccCCC-CCCHHHHHHHHHhhhhcccCC
Confidence 99987 57778999999999999999999888888 47777777543 22222 221 1 2
Q ss_pred CccEEE-EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIF-FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~-l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++|+ +++||||||.++|.+++++|+++|++||++||+||+|+++.+++. +.++..++. .+++++++||||++| +
T Consensus 187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~i~~~s~sK~~~-~ 264 (425)
T 1vp4_A 187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG-PERVVLLNTFSKVLA-P 264 (425)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC-TTTEEEEEESTTTTC-G
T ss_pred CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCC-CCCEEEEeccccccc-c
Confidence 678875 679999999999999999999999999999999999999887654 355655542 457899999999999 9
Q ss_pred ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhc--
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSL-- 359 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~-- 359 (433)
|+|+||++++++++ +.+.........+.+.++|.++.++++.... +++++.+++++++++.+.+.|++.
T Consensus 265 G~r~G~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 336 (425)
T 1vp4_A 265 GLRIGMVAGSKEFI--------RKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFS 336 (425)
T ss_dssp GGCEEEEECCHHHH--------HHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ccceEEEeeCHHHH--------HHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999998774 5666555554456789999999999985433 578899999999999999999885
Q ss_pred ---CCeeecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCC--CCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 360 ---GFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPG--GEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 360 ---g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
|+.+..+.+|+|+|++++ +.+..++...++++ ||.+.||..|+.. +++++||++.. +++++++++++|++++
T Consensus 337 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l 415 (425)
T 1vp4_A 337 DIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVV 415 (425)
T ss_dssp TSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred CCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 688877778999999998 34556777787777 9999999988643 46899999865 7899999999999875
No 43
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=100.00 E-value=4.7e-44 Score=355.59 Aligned_cols=334 Identities=23% Similarity=0.316 Sum_probs=268.4
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH-HHHhc-CCCCEE
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR-LQIVF-GSNVTM 152 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~-l~~l~-~~gd~V 152 (433)
.|..+++++.+.+..... .....|++..|.++||+++++++.+ ++.+++++|++|+|+++++.+ +..++ ++||.|
T Consensus 107 ~p~~~~~~a~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V 185 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPG-RATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGI 185 (500)
T ss_dssp SCHHHHHHHHHHHTTSTT-SCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEE
Confidence 566677777777764310 2567899999999999999999974 667889999999999999997 56677 799999
Q ss_pred EEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-----------CCccEEEEcCCCCccccC
Q 045431 153 AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-----------ARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 153 l~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~l~~p~nPtG~~ 221 (433)
++++|+|+.+...++..| .+++.++++.++++..+++.. .++++|+++|||||||.+
T Consensus 186 lv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~ 253 (500)
T 3tcm_A 186 LVPIPQYPLYSASIALHG------------GALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQV 253 (500)
T ss_dssp EEEESCCTHHHHHHHHTT------------CEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCC
T ss_pred EEeCCCcHhHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCccc
Confidence 999999999999999999 478888887765555554321 168899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccc----cC--CCCcceEEEecccccc-cccccceeeeec-
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFE----IP--GAKEVAIETSSFSKYA-GFTGVRLGWTVI- 291 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~----~~--~~~~~vi~i~S~sK~~-~~~G~r~G~l~~- 291 (433)
+|.+++++|+++|++||+++|+||+|+++.+++. ..++.. ++ ....++++++||||++ |++|+|+||+++
T Consensus 254 ~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 333 (500)
T 3tcm_A 254 LAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEIT 333 (500)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEe
Confidence 9999999999999999999999999999888542 344432 21 1123579999999999 889999999998
Q ss_pred --cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC--------h-hHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 292 --PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG--------F-KAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~-~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
+++++ +.+..... ...+++.+.|.++..++.... + +++++++++++++++.+.+.|+++
T Consensus 334 ~~~~~~~--------~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~ 404 (500)
T 3tcm_A 334 GFSAPVR--------EQIYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLE 404 (500)
T ss_dssp SCCTTHH--------HHHHHHHH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCCHHHH--------HHHHHHHh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77764 55655443 445688999998888887421 2 456788889999999999999998
Q ss_pred CCeeecCCCccEEEEECC--C----------CC-hHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeeccChhHHHHHH
Q 045431 360 GFKVYGGKNAPYVWVQFP--G----------RS-SWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFGHRGNVLEAC 425 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~--~----------~~-~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~~~~~l~~~l 425 (433)
|+.+..+.+++|+|+++. . .. ...++..+++++||.+.||+.|+. .+.++||+++..+++++++++
T Consensus 405 g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i 484 (500)
T 3tcm_A 405 GITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVI 484 (500)
T ss_dssp TEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHH
T ss_pred CcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHH
Confidence 999999999999997654 1 11 223345777778999999999984 567899999988899999999
Q ss_pred HHHHHhh
Q 045431 426 KRFKHLY 432 (433)
Q Consensus 426 ~~l~~~l 432 (433)
++|++++
T Consensus 485 ~~l~~~~ 491 (500)
T 3tcm_A 485 SRFTVFH 491 (500)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 44
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=6.7e-44 Score=341.34 Aligned_cols=327 Identities=16% Similarity=0.277 Sum_probs=269.5
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+++|+|+.+++++++|+.+.+++.+.+.. ...|++..+ .+||+++|+++ ++++++|++|+|+++++.+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~~~~-~~lr~~la~~~----~~~~~~v~~~~g~~~a~~~~ 98 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANK------AHLYPDDSM-IELKSTLAQKY----KVQNENIIIGAGSDQVIEFA 98 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGG------TTSCCCTTC-HHHHHHHHHHH----TCCGGGEEEESSHHHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh------hccCCCCCh-HHHHHHHHHHh----CCCcceEEECCCHHHHHHHH
Confidence 57999999999999999999999998752 356766655 99999999998 7888999999999999997
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNN 216 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~n 216 (433)
+..++++||+|++++|+|+++...++..| .+++.++.+ +.++ .+++. .+++++|++++|||
T Consensus 99 ~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~-~~~~-~d~~~l~~~l~~~~~~v~~~~p~n 164 (365)
T 3get_A 99 IHSKLNSKNAFLQAGVTFAMYEIYAKQCG------------AKCYKTQSI-THNL-DEFKKLYETHKDEIKLIFLCLPNN 164 (365)
T ss_dssp HHHHCCTTCEEEECSSCCTHHHHHHHHHT------------CEEEECSSS-SCCH-HHHHHHHHHTTTTEEEEEEESSCT
T ss_pred HHHHhCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEEecC-CCCC-CCHHHHHHHhCCCCCEEEEcCCCC
Confidence 57788999999999999999999999998 478888872 2233 33321 36899999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEecccccccc--C-CCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYIS--D-DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~--~-~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
|||.+++.+++++|+++| ++|+++|+||+|+++.+ . +.+.+........+++++++||||.+|++|+|+||+++++
T Consensus 165 ptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 243 (365)
T 3get_A 165 PLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANA 243 (365)
T ss_dssp TTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECH
T ss_pred CCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCH
Confidence 999999999999999998 57999999999998874 3 2233333322224678999999999999999999999988
Q ss_pred cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 294 ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+++ +.+..... ..+.+.+.|.++.+++++. +++++.+++++++++.+.+.|+++|+.+.++ .+.|+|
T Consensus 244 ~~~--------~~~~~~~~--~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~~~ 310 (365)
T 3get_A 244 NII--------SAFYKLRA--PFNVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKHNIKIIDS-YTNFIT 310 (365)
T ss_dssp HHH--------HHHHHHSC--TTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCEECCC-SSSEEE
T ss_pred HHH--------HHHHHhcC--CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhCCCEECCC-CCeEEE
Confidence 774 55554433 3458999999999999843 6789999999999999999999999887654 677899
Q ss_pred EECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 374 VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
++++..+..++...+.+ +||.+.||..|+ ++++||++. +++++++++++|+++++
T Consensus 311 ~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~---~~~iRis~~-~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 311 YFFDEKNSTDLSEKLLK-KGIIIRNLKSYG---LNAIRITIG-TSYENEKFFTEFDKILR 365 (365)
T ss_dssp EECSSSCHHHHHHHHHT-TTEECEECGGGT---CSEEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred EECCCCCHHHHHHHHHH-CCEEEEECccCC---CCEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence 99985566667666655 599999999887 689999986 88999999999999874
No 45
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=5e-44 Score=346.18 Aligned_cols=340 Identities=22% Similarity=0.310 Sum_probs=275.6
Q ss_pred CceEEecCCCCCC--CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 63 AEVISLGIGDTTE--PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 63 ~~~i~l~~g~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+++|+|+.|.++. .+++.+.+++.+.+.+.. .....|++..|..+||+++++++ ++++++|++|+|+++++.
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~~~al~ 105 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKG--EVALQYSPTEGYAPLRAFVAEWI----GVRPEEVLITTGSQQALD 105 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHH--HHHTSCCCTTCCHHHHHHHHHHH----TSCGGGEEEESHHHHHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcc--hhhhCCCCCCCCHHHHHHHHHHh----CCChhhEEEeccHHHHHH
Confidence 4689999987653 367889999988886522 12457877789999999999998 678899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C-CCccEEE-EcCC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V-ARTDIIF-FCSP 214 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~i~-l~~p 214 (433)
+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ +++.+ +++ . .++++|+ +++|
T Consensus 106 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~d~~~l~~~l~~~~~~~v~~~~~~ 172 (397)
T 2zyj_A 106 LVGKVFLDEGSPVLLEAPSYMGAIQAFRLQG------------PRFLTVPAGEE-GPDLDALEEVLKRERPRFLYLIPSF 172 (397)
T ss_dssp HHHHHHCCTTCEEEEEESCCHHHHHHHHTTC------------CEEEEEEEETT-EECHHHHHHHHHHCCCSCEEECCBS
T ss_pred HHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEecCcCCC-CCCHHHHHHHHhhcCCeEEEECCCC
Confidence 7 57778999999999999999999888888 47777777543 22221 221 1 3678875 5799
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCC---cceEEEecccccccccccceeeee
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAK---EVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~---~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
|||||.+++.+++++|+++|++||++||+||+|+++.+.+. +.++..++. . +++++++|+||++| +|+|+||++
T Consensus 173 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~-~G~r~G~~~ 250 (397)
T 2zyj_A 173 QNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAR-EAGYPGVIYLGSFSKVLS-PGLRVAFAV 250 (397)
T ss_dssp CTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHH-HHTCCCEEEEEESTTTTC-GGGCCEEEE
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCc-ccCCCeEEEEeccccccc-ccceeEEEe
Confidence 99999999999999999999999999999999999887654 455555532 2 57899999999999 999999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc---CCeeecCC
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL---GFKVYGGK 367 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~~~~~~~ 367 (433)
++++++ +.+.........+++.++|.++.++++....+++++++++++++++.+.+.|+++ |+.+..+.
T Consensus 251 ~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~ 322 (397)
T 2zyj_A 251 AHPEAL--------QKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPK 322 (397)
T ss_dssp CCHHHH--------HHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCS
T ss_pred cCHHHH--------HHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCC
Confidence 998774 6666555554555789999999999985422678899999999999999999885 78887777
Q ss_pred CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCC--CCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPG--GEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
+|+|+|++++ +.+..++...+.++ ||.+.||..|+.. +++++||++.. +++++++++++|++++
T Consensus 323 ~g~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l 390 (397)
T 2zyj_A 323 GGMFVWMELPKGLSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRAL 390 (397)
T ss_dssp BSSEEEEECSTTCCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 8999999998 45667777777766 9999999988643 46899999865 7999999999998875
No 46
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=6.6e-44 Score=348.76 Aligned_cols=347 Identities=20% Similarity=0.289 Sum_probs=269.7
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhc------ccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCC--CCCCcEEEc
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYAL------STQEGYSGYGAEQGEKPLRAAIASTFYK--DLG--IEEGDIFVS 132 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~--~~~~~i~~~ 132 (433)
..+|+|+.+.+++++ +.+.+++.+..... ........|+++.|..+||+++++++.+ ++. +++++|++|
T Consensus 36 ~~~i~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~ 114 (428)
T 1iay_A 36 NGVIQMGLAENQLCL-DLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCSSH-HHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEE
T ss_pred CceeeeccccchhhH-HHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEc
Confidence 368999998876654 47777776432100 0001235787778999999999999975 333 678999999
Q ss_pred CChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH-HhCCcccccccccccceEEEeecCccCCcccCCCC--------
Q 045431 133 DGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV-IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------- 202 (433)
Q Consensus 133 ~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 202 (433)
+|+++++.+ +..++++||+|++++|+|+++...+. ..| .+++.++.+.++++..+++.
T Consensus 115 ~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 182 (428)
T 1iay_A 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTG------------VQLIPIHCESSNNFKITSKAVKEAYENA 182 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTC------------CEEEEECCCTTTTTCCCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcC------------CEEEEeecCCccCCcCCHHHHHHHHHHH
Confidence 999999987 67788999999999999999876443 456 47778887654344333221
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCC-------CcceEE
Q 045431 203 ---VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGA-------KEVAIE 271 (433)
Q Consensus 203 ---~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~-------~~~vi~ 271 (433)
..++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.+.+. ..++..+... .|++++
T Consensus 183 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv 262 (428)
T 1iay_A 183 QKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred HhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEE
Confidence 13688999999999999999999999999999999999999999999777643 3345444322 478899
Q ss_pred Eecccccccccccceeeeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKEN 348 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~ 348 (433)
+.||||++|++|+|+||++++ ++++ +.+.+.. ...+.+.++|.++.+++++..+ +++++.+++++++
T Consensus 263 ~~s~sK~~g~~Glr~G~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 263 VYSLSKDMGLPGFRVGIIYSFNDDVV--------NCARKMS--SFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp EEESTTTSSCGGGCEEEEEESCHHHH--------HHHHHHH--TTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhcCCCCceEEEEEeCCHHHH--------HHHHHHH--hcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 4453 5555432 2345789999999999986531 4678899999999
Q ss_pred HHHHHHHHhhcCCeeecCCCccEEEEECCCC-------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhH
Q 045431 349 TDIIVETFNSLGFKVYGGKNAPYVWVQFPGR-------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGN 420 (433)
Q Consensus 349 ~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~ 420 (433)
++.+.+.|+++|+.+.++.+|+|+|++++.. ...++...+++++||.+.||..|+..+++++||++. .++++
T Consensus 333 ~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~ 412 (428)
T 1iay_A 333 HKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGT 412 (428)
T ss_dssp HHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHH
T ss_pred HHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHH
Confidence 9999999999888887777899999999742 234566777666799999999887655689999986 68999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 413 i~~~~~~l~~~l 424 (428)
T 1iay_A 413 VDIALARIRRFV 424 (428)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 47
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=1.5e-43 Score=337.46 Aligned_cols=330 Identities=16% Similarity=0.226 Sum_probs=271.2
Q ss_pred CCCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 60 YPDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
.+++.+|+|+.|++++++|+.+.+++.+.+.. ...| +..+..+||+++++++ ++++++|++|+|+++++
T Consensus 13 ~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~l~~~la~~~----~~~~~~i~~~~g~~~a~ 81 (354)
T 3ly1_A 13 PSTDNPIRINFNENPLGMSPKAQAAARDAVVK------ANRY-AKNEILMLGNKLAAHH----QVEAPSILLTAGSSEGI 81 (354)
T ss_dssp CCSSSCEECSSCCCSSCCCHHHHHHHHHTGGG------TTSC-CHHHHHHHHHHHHHHT----TSCGGGEEEESHHHHHH
T ss_pred CCCCceEEccCCCCCCCCCHHHHHHHHHHHhh------CcCC-CCCchHHHHHHHHHHh----CCChHHEEEeCChHHHH
Confidence 34567999999999999999999999987753 3466 4568899999999997 78889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C--CCccEEEEcC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V--ARTDIIFFCS 213 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~i~l~~ 213 (433)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+..++.+ +++ . +++++|++++
T Consensus 82 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~ 149 (354)
T 3ly1_A 82 RAAIEAYASLEAQLVIPELTYGDGEHFAKIAG------------MKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVN 149 (354)
T ss_dssp HHHHHHHCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEES
T ss_pred HHHHHHHhCCCCeEEECCCCchHHHHHHHHcC------------CEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeC
Confidence 97 57778999999999999999999999888 47888888754333322 221 1 6899999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc-cCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE-IPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
||||||.+++.+++++|+++| +||+++|+||+|+++.+++.+.+... .+...+++++++||||.+|++|+|+||++++
T Consensus 150 p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 228 (354)
T 3ly1_A 150 PNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH 228 (354)
T ss_dssp SCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC
T ss_pred CCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC
Confidence 999999999999999999999 89999999999998887765434433 2332267899999999999999999999998
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEE
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYV 372 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~ 372 (433)
++++ +.+...... .+.+.+.|.++.+++++. .++++.+++++++++.+.+.|+++|+.+.+ ..|+|+
T Consensus 229 ~~~~--------~~~~~~~~~--~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~ 295 (354)
T 3ly1_A 229 PTVI--------ALMGRYVAG--EKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLP-SEGNFV 295 (354)
T ss_dssp HHHH--------HHHGGGTTC--SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CCSSEE
T ss_pred HHHH--------HHHHHhcCC--CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECC-CCceEE
Confidence 8774 555544332 568999999999999843 678999999999999999999998888775 478889
Q ss_pred EEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|++++. +..++...+.+ +||.+. |..++ .++++||++. +++++++++++|++++
T Consensus 296 ~~~~~~-~~~~~~~~l~~-~gi~v~-g~~~~--~~~~iRis~~-~~~~i~~~~~~l~~~l 349 (354)
T 3ly1_A 296 FHQLVV-PLKDYQTHMAD-AGVLIG-RAFPP--ADNWCRISLG-TPQEMQWVADTMREFR 349 (354)
T ss_dssp EEECSS-CHHHHHHHHHH-TTEECC-CCCTT--CTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred EEECCC-CHHHHHHHHHH-CCEEEe-ecCCC--CCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 999986 56667777665 599998 76543 5689999975 7899999999999876
No 48
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=3.5e-43 Score=336.12 Aligned_cols=328 Identities=17% Similarity=0.281 Sum_probs=268.4
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
.+++|+|+.|++++++|+.+.+++.+.+. ....| +..+..++|+++++++ ++++++|++|+|+++++.+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------~~~~y-~~~~~~~lr~~la~~~----~~~~~~v~~~~g~t~a~~~ 99 (363)
T 3ffh_A 31 LTKITKLSSNENPLGTSKKVAAIQANSSV------ETEIY-PDGWASSLRKEVADFY----QLEEEELIFTAGVDELIEL 99 (363)
T ss_dssp CSCCEECSSCSCTTCCCHHHHHHHHTCBS------CCCBC-----CHHHHHHHHHHH----TCCGGGEEEESSHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHH------HhhcC-CCcchHHHHHHHHHHh----CCChhhEEEeCCHHHHHHH
Confidence 35799999999999999999999888553 23456 5578999999999998 7888999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCc
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNP 217 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nP 217 (433)
+..++++||+|++++|+|+++...++..| .+++.++.+++..++.+ +++ .+++++|++++||||
T Consensus 100 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~np 167 (363)
T 3ffh_A 100 LTRVLLDTTTNTVMATPTFVQYRQNALIEG------------AEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNP 167 (363)
T ss_dssp HHHHHCSTTCEEEEEESSCHHHHHHHHHHT------------CEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred HHHHHccCCCEEEEcCCChHHHHHHHHHcC------------CEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCC
Confidence 57778999999999999999999999998 47888888754333222 111 357999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF 297 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~ 297 (433)
||.+++.+++.+|++.|++ |+++|+||+|+++.+ +...+........+++++++||||.+|++|+|+||++++++++
T Consensus 168 tG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~- 244 (363)
T 3ffh_A 168 TGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEII- 244 (363)
T ss_dssp TCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHH-
T ss_pred cCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHH-
Confidence 9999999999999998877 999999999998877 4443444433346789999999999999999999999988874
Q ss_pred cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-cCCeeecCCCccEEEEEC
Q 045431 298 SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-LGFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~g~~~~~~~ 376 (433)
+.+..... ..+.+.+.|.++.+++++. +++++.+++++++++.+.+.|++ .|+.+.+ ..++|+|+++
T Consensus 245 -------~~l~~~~~--~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~~~~ 312 (363)
T 3ffh_A 245 -------RQLNIVRP--PFNTTSIGQKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFEKVKLYP-ANGNFVLIDL 312 (363)
T ss_dssp -------HHHHHTCC--SCCCBHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCTTCEECC-CCSSEEEEEC
T ss_pred -------HHHHHhCC--CCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCCCceECC-CCCeEEEEEC
Confidence 55554433 4568999999999998743 67899999999999999999999 5888875 4678899999
Q ss_pred CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+. +..++...+.+ +||.+.||..|+. ++++||++. +++++++++++|++++
T Consensus 313 ~~-~~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 313 GI-EAGTIFSYLEK-NGYITRSGAALGF--PTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp SS-CHHHHHHHHHH-TTEECEETTTTTC--TTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHH-CCeEEEeCccCCC--CCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 86 66677777665 5999999998865 679999986 8999999999999864
No 49
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=1.1e-43 Score=347.75 Aligned_cols=347 Identities=20% Similarity=0.294 Sum_probs=275.2
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccC-------CCCCCCCCCCCCHHHHHHHHHHHhc----cCCCCCCcEEEc
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQ-------EGYSGYGAEQGEKPLRAAIASTFYK----DLGIEEGDIFVS 132 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~Y~~~~g~~~lr~~la~~l~~----~~~~~~~~i~~~ 132 (433)
.+|+|+.+.+.+. .+.+.+++.+........ ....+|++..|.++||+++++++.+ ++.+++++|++|
T Consensus 39 ~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~ 117 (435)
T 3piu_A 39 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT 117 (435)
T ss_dssp SBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred CeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEc
Confidence 5899999887654 566666666543321100 0124698899999999999999973 244678999999
Q ss_pred CChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH-HhCCcccccccccccceEEEeecCccCCcccCCCC--------
Q 045431 133 DGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV-IMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------- 202 (433)
Q Consensus 133 ~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 202 (433)
+|+++++.+ +..++++||.|++++|+|+++...+. ..| .+++.++.+.++++..+++.
T Consensus 118 ~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 185 (435)
T 3piu_A 118 AGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTG------------VEIVPIHCTSSNGFQITETALEEAYQEA 185 (435)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTC------------CEEEEEECCGGGTSCCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcC------------CEEEEeeCCCccCCcCCHHHHHHHHHHH
Confidence 999999997 57788999999999999999887766 566 47888888766555444332
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCC---------Ccce
Q 045431 203 ---VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGA---------KEVA 269 (433)
Q Consensus 203 ---~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~---------~~~v 269 (433)
..++++|++++||||||.+++.+++++|+++|++||+++|+||+|+.+.+.+. +.++..+... ++++
T Consensus 186 ~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 265 (435)
T 3piu_A 186 EKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRV 265 (435)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGE
T ss_pred HhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCE
Confidence 13788999999999999999999999999999999999999999998777654 3344433221 5788
Q ss_pred EEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh--hHHHHHHHHHHH
Q 045431 270 IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF--KAVHEVIGFYKE 347 (433)
Q Consensus 270 i~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~ 347 (433)
++++||||.+|++|+|+||++++++.+ .+.+... ......+.+.|.++.+++.+..+ +++++.++++++
T Consensus 266 i~i~s~sK~~g~~G~r~G~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 336 (435)
T 3piu_A 266 HVVYSLSKDLGLPGFRVGAIYSNDDMV-------VAAATKM--SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQ 336 (435)
T ss_dssp EEEEESSSSSCCGGGCEEEEEESCHHH-------HHHHHHH--GGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeecccCCCceeEEEEEeCCHHH-------HHHHHHH--hhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999965543 2444433 23345788999988888875443 367888999999
Q ss_pred HHHHHHHHHhhcCCeeecCCCccEEEEECCCC-------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-Chh
Q 045431 348 NTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR-------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRG 419 (433)
Q Consensus 348 ~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~ 419 (433)
+++.+.+.|++.|+.+..+.+|+++|++++.. ...++...+++++||.+.||..|+..+++++||++.. +++
T Consensus 337 ~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e 416 (435)
T 3piu_A 337 RQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPER 416 (435)
T ss_dssp HHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHH
T ss_pred HHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHH
Confidence 99999999999999988888889999999742 2456777777777999999999987778999999866 899
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 417 ~i~~~l~~l~~~l 429 (435)
T 3piu_A 417 TLDLAMQRLKAFV 429 (435)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 50
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=100.00 E-value=4e-43 Score=342.01 Aligned_cols=352 Identities=18% Similarity=0.248 Sum_probs=259.0
Q ss_pred CCceEEecCCCCCCCCh--HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHH
Q 045431 62 DAEVISLGIGDTTEPIP--EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~ 137 (433)
++++|+|+.|.|+..++ +.+.+++.+.+....+......|++..|.++||+++|+|+.+ ++++++++|++|+|+++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~ 109 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS 109 (417)
T ss_dssp --CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence 35789999999875332 455666666654321001234798899999999999999975 77788999999999999
Q ss_pred HHHH-HHHhcCCCC-----EEEEe-CCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCCCCCcc
Q 045431 138 DISR-LQIVFGSNV-----TMAVQ-DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LSTVARTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd-----~Vl~~-~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 207 (433)
++++ +..++++|| +|+++ +|+|+++...+...+.... .+ ..+..++.+. .++..+ ++..++++
T Consensus 110 al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~-~~~~~d~~~l~~~~~~~ 182 (417)
T 3g7q_A 110 AFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS---AR---PNIELLPEGQ-FKYHVDFEHLHIGEETG 182 (417)
T ss_dssp HHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEE---CC---CEEEEEGGGE-EEEECCGGGCCCCTTEE
T ss_pred HHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcc---cc---CcccccCCcc-cccccCHHHhccccCce
Confidence 9997 577788987 89996 9999998876543332100 00 1333333321 011112 22235789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
++++++||||||.+++.+++++|+++|++||++||+||+|+.+.......... ....+++++++|||| ++++|+|+|
T Consensus 183 ~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK-~~~~G~r~G 259 (417)
T 3g7q_A 183 MICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR--PLWNPNIILCMSLSK-LGLPGSRCG 259 (417)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC--CCCCTTEEEEEESGG-GTCTTSCCE
T ss_pred EEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc--cCCCCCEEEEEechh-ccCCCcceE
Confidence 99999999999999999999999999999999999999998632211111111 123568999999999 568999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHH-HHHHHHHHHHHHHHHHhhc----CC
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHE-VIGFYKENTDIIVETFNSL----GF 361 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~-~~~~~~~~~~~l~~~l~~~----g~ 361 (433)
|++++++++ +.+.........+++.+.|.++.+++++..+ +++.+ +++.++++++.+.+.|++. ++
T Consensus 260 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 331 (417)
T 3g7q_A 260 IIIANDKTI--------TAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERC 331 (417)
T ss_dssp EEECCHHHH--------HHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTC
T ss_pred EEEeCHHHH--------HHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 999998885 6677766666667889999999999886655 34444 7788999999998888763 57
Q ss_pred eeecCCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCC-------CCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 362 KVYGGKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGG-------EGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~-------~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+..+.+|+++|++++. .+..++...+ .++||.+.||..|+... ++++||++..+++++++++++|++++
T Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l 410 (417)
T 3g7q_A 332 LIHKPEGAIFLWLWFKDLPITTELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEI 410 (417)
T ss_dssp EEECCCBSSEEEEECTTCSSCHHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHH
T ss_pred eeeCCCcceEEEEEcCCCCCCHHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 88888899999999984 4666777766 55699999999886543 57999998779999999999999876
No 51
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=100.00 E-value=2e-44 Score=352.29 Aligned_cols=340 Identities=15% Similarity=0.126 Sum_probs=268.6
Q ss_pred ceEEecCCCCCCCC---hHHHHHHH--HHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 64 EVISLGIGDTTEPI---PEVITSAL--AKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 64 ~~i~l~~g~~~~~~---~~~~~~a~--~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
..|+|+.|.|+... ++.+.+++ .+++.... ....+|++..|.++||+++|+++ ++++++|++|+|++++
T Consensus 34 ~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~----~~~~~~i~~t~G~~~a 107 (427)
T 3ppl_A 34 LKLDLTRGKPSSEQLDFADELLALPGKGDFKAADG--TDVRNYGGLDGIVDIRQIWADLL----GVPVEQVLAGDASSLN 107 (427)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTS--CBTTSSCCSSCCHHHHHHHHHHH----TSCGGGEEECSSCHHH
T ss_pred ceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccc--hhhcCCCCCCCcHHHHHHHHHHh----CCCcceEEEeCCcHHH
Confidence 57999999987432 22455554 44433211 34568988899999999999998 7899999999999999
Q ss_pred H--HH-HHHhcC--C----------CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC
Q 045431 139 I--SR-LQIVFG--S----------NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST 202 (433)
Q Consensus 139 l--~~-l~~l~~--~----------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 202 (433)
+ ++ +..++. | ||+|++++|+|+.+...++..| .+++.++.+.+ +++.+ +++
T Consensus 108 l~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~~ 174 (427)
T 3ppl_A 108 IMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG------------FEMISVPMNED-GPDMDAVEE 174 (427)
T ss_dssp HHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT------------CEEEEEEEETT-EECHHHHHH
T ss_pred HHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC------------CEEEEeCCCCC-CCCHHHHHH
Confidence 9 45 466666 6 9999999999999999999999 47888888654 33322 221
Q ss_pred ---CCCccEEEEc-CCCCccccCCCHHHHHHHHHHH-HHcCCEEEEeccccccccCCCC---Cccccc---CCCCcceEE
Q 045431 203 ---VARTDIIFFC-SPNNPTGAAATREQLTRLVQFA-KDNGSIIVYDSAYALYISDDNP---RSIFEI---PGAKEVAIE 271 (433)
Q Consensus 203 ---~~~~~~i~l~-~p~nPtG~~~~~~~~~~i~~~a-~~~~~~li~De~~~~~~~~~~~---~~~~~~---~~~~~~vi~ 271 (433)
.+++++|+++ +||||||.+++.+++++|+++| ++||++||+||+|+++.+.+.+ .++..+ .+..+++++
T Consensus 175 ~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (427)
T 3ppl_A 175 LVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWA 254 (427)
T ss_dssp HTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEE
T ss_pred HHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEE
Confidence 3578888876 8899999999999999999999 9999999999999997776532 244443 124578999
Q ss_pred EecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc-CCh-hHHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP-EGF-KAVHEVIGFYKENT 349 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~-~~~~~~~~~~~~~~ 349 (433)
++||||+. ++|+|+||++++++++ +.+.........+++.+.|.++.+++.+ ... +++++.++.+++++
T Consensus 255 ~~S~SK~~-~~G~r~G~~~~~~~l~--------~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (427)
T 3ppl_A 255 FTSTSKIT-LAGAGVSFFLTSAENR--------KWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKF 325 (427)
T ss_dssp EEESTTTS-CTTSSCEEEECCHHHH--------HHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred Eechhhcc-CcCccEEEEEcCHHHH--------HHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHH
Confidence 99999995 6999999999998885 6677766666777899999999999986 222 67889999999999
Q ss_pred HHHHHHHhhc-----CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecC-CCCCCC---CCCCeEEEeecc-Chh
Q 045431 350 DIIVETFNSL-----GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP-GSGFGP---GGEGFIRVSAFG-HRG 419 (433)
Q Consensus 350 ~~l~~~l~~~-----g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~f~~---~~~~~iRi~~~~-~~~ 419 (433)
+.+.+.|.+. ++.+..|.+|+|+|++++..+..++... +.++||.+.| |..|+. ..++++||++.. +++
T Consensus 326 ~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~-l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~ 404 (427)
T 3ppl_A 326 NKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAEL-AKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVE 404 (427)
T ss_dssp HHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHH-HHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHH
T ss_pred HHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHH-HHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHH
Confidence 9998888652 4777778899999999986556666555 4566999999 555542 357899999866 789
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 405 ~i~~~~~~l~~~l 417 (427)
T 3ppl_A 405 ELEVAMDGVATCV 417 (427)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 52
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=3.7e-43 Score=341.21 Aligned_cols=345 Identities=22% Similarity=0.303 Sum_probs=277.1
Q ss_pred CCceEEecCCCCCCC--ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHH
Q 045431 62 DAEVISLGIGDTTEP--IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~ 137 (433)
+.++|+|+.|.++.. +++.+.+++.+.+.+.. .... |++..|..++|+++++++.+ ++.+++++|++|+|+++
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~ 109 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEP--KSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG 109 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCG--GGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcc--cccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence 446899999987543 67889999999887532 2345 88888999999999999976 54578899999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C------CCcc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V------ARTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~------~~~~ 207 (433)
++.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ +++.+ +++ . .+++
T Consensus 110 a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~ 176 (407)
T 2zc0_A 110 ALDLLGRVLIDPGDVVITENPSYINTLLAFEQLG------------AKIEGVPVDND-GMRVDLLEEKIKELKAKGQKVK 176 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTT------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEcccCCC-CCCHHHHHHHHHhhhcccCCce
Confidence 9997 57778999999999999999998888888 47777777543 22221 221 1 2678
Q ss_pred EEE-EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccc
Q 045431 208 IIF-FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 208 ~i~-l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+|+ +++||||||.+++.+++++|+++|++||++||+||+|+++.+.+. +.++..++. .+++++++||||+++ +|+|
T Consensus 177 ~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~-~G~r 254 (407)
T 2zc0_A 177 LIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDN-EGRVIVAGTLSKVLG-TGFR 254 (407)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCS-SCCEEEEEESTTTTC-TTSC
T ss_pred EEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCC-CCCEEEEcccccccC-CCcc
Confidence 875 569999999999999999999999999999999999999877654 345656643 457899999999998 9999
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-h-hHHHHHHHHHHHHHHHHHHHHhhc--CC
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-F-KAVHEVIGFYKENTDIIVETFNSL--GF 361 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~l~~~l~~~--g~ 361 (433)
+||++++++++ +.+.........+++.+.|.++.++++... . .++++.+++++++++.+.+.|++. ++
T Consensus 255 ~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (407)
T 2zc0_A 255 IGWIIAEGEIL--------KKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNA 326 (407)
T ss_dssp CEEEECCHHHH--------HHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred eEEEecCHHHH--------HHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999998774 666665555555678999999888887531 2 456788899999999999999874 67
Q ss_pred eeecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCC--CCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 362 KVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPG--GEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
.+..+.+|+|+|++++ +.+..++...+.+++||.+.||..|... +.+++||++.. +++++++++++|++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l 401 (407)
T 2zc0_A 327 EFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLY 401 (407)
T ss_dssp CBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHH
T ss_pred EEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 7777778899999997 4566778878777669999999988653 46899999865 7999999999998875
No 53
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=2.2e-42 Score=330.75 Aligned_cols=328 Identities=15% Similarity=0.226 Sum_probs=264.3
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
++++|+|+.|.+++++|+.+.+++.+.+.. ...|++ .|..++|+++++++ ++++++|++|+|+++++.+
T Consensus 23 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~-~~~~~l~~~la~~~----~~~~~~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 23 PDQLLDFSANINPLGMPVSVKRALIDNLDC------IERYPD-ADYFHLHQALARHH----QVPASWILAGNGETESIFT 91 (364)
T ss_dssp GGGSEECSSCCCTTCCCHHHHHHHHHTGGG------GGSCCC-TTCHHHHHHHHHHH----TSCGGGEEEESSHHHHHHH
T ss_pred ccceEEeccccCCCCCCHHHHHHHHHHHHH------hhcCCC-CCHHHHHHHHHHHH----CcCHHHEEECCCHHHHHHH
Confidence 446899999998888889999999887753 346744 58999999999998 7888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNN 216 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~n 216 (433)
+...+ +||+|++++|+|+++...++..| .+++.++.+.++++.. ++. .++++++++++|||
T Consensus 92 ~~~~~-~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~n 157 (364)
T 1lc5_A 92 VASGL-KPRRAMIVTPGFAEYGRALAQSG------------CEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNN 157 (364)
T ss_dssp HHHHH-CCSEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCT
T ss_pred HHHHc-CCCeEEEeCCCcHHHHHHHHHcC------------CeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCC
Confidence 54444 78999999999999999998888 4778888865334443 221 25788999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeee-ccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV-IPKEL 295 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~-~~~~~ 295 (433)
|||.++|.+++++|+++|++||+++|+||+|+++.+++ .+.....+..+++++++|+||.+|++|+|+||++ +++++
T Consensus 158 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 235 (364)
T 1lc5_A 158 PTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE--TGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAA 235 (364)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC--CCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHH
T ss_pred CCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCc--cchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHH
Confidence 99999999999999999999999999999999887652 2222221224678999999999998999999999 88877
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWV 374 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~ 374 (433)
+ +.+.... ...+.+.++|.++.++++. ..++++.+++++++++.+.+.|+++ |+.+.+ ..|+|+|+
T Consensus 236 ~--------~~l~~~~--~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~ 302 (364)
T 1lc5_A 236 M--------ARMRRQQ--MPWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYP-GRANYLLL 302 (364)
T ss_dssp H--------HHHHHHS--CTTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECC-CSSSEEEE
T ss_pred H--------HHHHHhC--CCCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECC-CCCeEEEE
Confidence 4 5555433 2456889999999999985 3578999999999999999999988 888765 57788999
Q ss_pred ECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 375 QFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+++. ...++...+.+ +||.+.||..|+..+++++||++. +.++++++++.|++++
T Consensus 303 ~~~~-~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 357 (364)
T 1lc5_A 303 RCER-EDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 357 (364)
T ss_dssp EESC-TTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred ECCC-cHHHHHHHHHH-CCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 9874 23456666664 599999999887555789999974 5778888888887765
No 54
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=4.3e-42 Score=328.17 Aligned_cols=328 Identities=18% Similarity=0.283 Sum_probs=264.9
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+++++|+|+.+++++++|+.+.+++.+.+.... .....|++ .+..+||+++++++ ++++++|++|+|+++++.
T Consensus 24 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~-~~~~~lr~~la~~~----g~~~~~i~~t~g~~~al~ 96 (360)
T 3hdo_A 24 DIASWIKLNTNENPYPPSPEVVKAILEELGPDG--AALRIYPS-ASSQKLREVAGELY----GFDPSWIIMANGSDEVLN 96 (360)
T ss_dssp CCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTC--GGGGSCCC-SSCHHHHHHHHHHH----TCCGGGEEEESSHHHHHH
T ss_pred cccceeeccCCCCCCCCCHHHHHHHHHHHhccc--chhhcCCC-CchHHHHHHHHHHh----CcCcceEEEcCCHHHHHH
Confidence 345799999999999999999999999886421 12456744 47799999999998 788999999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG 219 (433)
+ +..++++||+|++++|+|.++...++..| .+++.++.+.+..+ .++.+..+++++++++||||||
T Consensus 97 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~-~~l~~~~~~~~v~i~~p~nptG 163 (360)
T 3hdo_A 97 NLIRAFAAEGEEIGYVHPSYSYYGTLAEVQG------------ARVRTFGLTGDFRI-AGFPERYEGKVFFLTTPNAPLG 163 (360)
T ss_dssp HHHHHHCCTTCEEEEESSSCTHHHHHHHHHT------------CEEEEECBCTTSSB-TTCCSSBCSSEEEEESSCTTTC
T ss_pred HHHHHHhCCCCEEEEcCCChHHHHHHHHHCC------------CEEEEeeCCCCCCH-HHHHhhcCCCEEEEeCCCCCCC
Confidence 7 57788999999999999999999999999 47888888655444 4444444678999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++.++ |.++|+++|+++|+||+|+++... ...++.. ..+++++++||||.+|++|+|+||++++++++
T Consensus 164 ~~~~~~~---l~~l~~~~~~~li~De~~~~~~~~-~~~~~~~---~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~--- 233 (360)
T 3hdo_A 164 PSFPLEY---IDELARRCAGMLVLDETYAEFAES-NALELVR---RHENVVVTRTLSKSYSLAGMRIGLAIARPEVI--- 233 (360)
T ss_dssp CCCCHHH---HHHHHHHBSSEEEEECTTGGGSSC-CCTHHHH---HCSSEEEEEESTTTTSCTTSCCEEEECCHHHH---
T ss_pred CCcCHHH---HHHHHHHCCCEEEEECChHhhCCc-chhHHhc---cCCCEEEEecchHhhcCCccceeeEeeCHHHH---
Confidence 9999655 555667899999999999986332 1222221 24678999999999999999999999988774
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCC
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGR 379 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~ 379 (433)
+.+.... ...+.+.++|.++.+++++ ..++++.+++++++++.+.+.|+++|+.+.+ ..+.|+|+.+++.
T Consensus 234 -----~~~~~~~--~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~ 303 (360)
T 3hdo_A 234 -----AALDKIR--DHYNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIP-SQGNYLFATPPDR 303 (360)
T ss_dssp -----HHHHHHS--CSCCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECC-CSSSEEEEECTTC
T ss_pred -----HHHHHhC--CCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcC-CCccEEEEECCCC
Confidence 5555443 2356899999999999885 4578899999999999999999998888765 4788999999876
Q ss_pred ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 380 SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 380 ~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..++...+. ++||.+.|+.. ...++++||++. +++++++++++|+++-
T Consensus 304 ~~~~l~~~l~-~~gi~v~~~~~--~~~~~~iRis~~-~~~e~~~l~~al~~~~ 352 (360)
T 3hdo_A 304 DGKRVYDGLY-ARKVLVRHFSD--PLLAHGMRISIG-TREEMEQTLAALKEIG 352 (360)
T ss_dssp CHHHHHHHHH-HTTEECBCCCS--TTTTTSEEEECC-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HCCEEEEECCC--CCCCCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 7777777665 45999999775 334689999985 8999999999998864
No 55
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=6.3e-43 Score=332.67 Aligned_cols=325 Identities=17% Similarity=0.279 Sum_probs=258.4
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
.++++|||+.+++++++|+.+.+++.+.+. ....|++..+ .+||+++|+++ ++++++|++|+|+++++.
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~~~~~------~~~~y~~~~~-~~lr~~la~~~----~~~~~~i~~t~g~~~al~ 81 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLVENLN------CIRHYPEPDA-GTLRQMLAKRN----SVDNNAILVTNGPTAAFY 81 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHHHTGG------GGGSCCCTTC-HHHHHHHHHHT----TCCGGGEEEESHHHHHHH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHHHhHh------HHhcCCCCcH-HHHHHHHHHHh----CcCHHHEEEcCCHHHHHH
Confidence 446799999999999999999999988773 2356766666 89999999997 788999999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeec-CccCCcccCCCCCCCccEEEEcCCCCccc
Q 045431 141 RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRC-TAENGFFPDLSTVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 141 ~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~l~~p~nPtG 219 (433)
++...+. ||+|++++|+|.++...++..| .+++.++. ++++++.. +++++|++++||||||
T Consensus 82 ~~~~~l~-gd~Vi~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~-----~~~~~v~i~~p~nptG 143 (350)
T 3fkd_A 82 QIAQAFR-GSRSLIAIPSFAEYEDACRMYE------------HEVCFYPSNEDIGEADF-----SNMDFCWLCNPNNPDG 143 (350)
T ss_dssp HHHHHTT-TCEEEEEESCCHHHHHHHHHTT------------CEEEEEETTSCGGGSCC-----TTCSEEEEESSCTTTC
T ss_pred HHHHHHC-CCEEEEeCCCcHHHHHHHHHcC------------CeEEEEecCCccccCcc-----CCCCEEEEeCCCCCcC
Confidence 8544444 9999999999999999999998 48888888 55444432 5789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++.+++++|+++|+++ +||+||+|+++.+.+... ...++ ..+++++++||||.+|++|+|+||++++++++
T Consensus 144 ~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~-~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~--- 216 (350)
T 3fkd_A 144 RLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR-PADIK-GRKNLVMVYSFSHAYGIPGLRIGYIVANKDFM--- 216 (350)
T ss_dssp CCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC-GGGGT-TCSSEEEEEESHHHHSCGGGCCEEEECCHHHH---
T ss_pred CCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchh-hHHhh-cCCCEEEEecCchhccCcchheEeEEeCHHHH---
Confidence 999999999998888765 999999999887765432 23333 35678999999999999999999999988774
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECCC
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~ 378 (433)
+.+.... ...+.+.++|.++.+++++.. .+.++.++.. ++++.+.+.|+++ |+.+.+ ..++|+|+.++.
T Consensus 217 -----~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~ 286 (350)
T 3fkd_A 217 -----KRVAAFS--TPWAVNALAIEAAKFILIHPA-QFTLPIRKWQ-RNTVDFITALNRLDGVEVHP-SGTTFFLLRLKK 286 (350)
T ss_dssp -----HHHHTTC--CTTCSCHHHHHHHHHHHHCTT-TTCCCHHHHH-HHHHHHHHHHHHSTTEEECC-CSSSEEEEEESS
T ss_pred -----HHHHHhC--CCCCCCHHHHHHHHHHHhCHH-HHHHHHHHHH-HHHHHHHHHHhcCCCcEECC-CCCcEEEEECCC
Confidence 5555433 234678999999999887543 1223333444 8889999999988 888765 577888999985
Q ss_pred CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 379 RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.+..++...|.+++||.+.||..|+..+++++||++. ++++++++++.|++++
T Consensus 287 ~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 339 (350)
T 3fkd_A 287 GTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFL 339 (350)
T ss_dssp SCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 5677788887774799999999998777899999985 6677777777777654
No 56
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=100.00 E-value=1.9e-44 Score=347.84 Aligned_cols=329 Identities=19% Similarity=0.193 Sum_probs=252.8
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCC-----HHHHHHHHHHHhc-cCCCCC-CcEEEcC
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGE-----KPLRAAIASTFYK-DLGIEE-GDIFVSD 133 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~-----~~lr~~la~~l~~-~~~~~~-~~i~~~~ 133 (433)
.++++|+|+.|.|+++.|+.+.+++.+..... .......|++..|. ++||+++|+|+.+ ++.+++ ++|++|+
T Consensus 20 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~ 98 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIR-GCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGT 98 (391)
T ss_dssp TTTSCEECSSCCCGGGHHHHHHTGGGSCEEEC-TTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEE
T ss_pred CCCCeeEcCCCCCCCCCCHHHHHhHHHHhhcC-ccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeC
Confidence 34578999999998766655555543322111 11245689999998 9999999999974 666666 6999999
Q ss_pred ChHHHHHH-HHHhcCCCC----EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccE
Q 045431 134 GAKCDISR-LQIVFGSNV----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI 208 (433)
Q Consensus 134 G~~~al~~-l~~l~~~gd----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (433)
|+++++.+ +..++++|| +|++++|+|+.+...++..|. +++.++.+.+ ++. .+++++
T Consensus 99 G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~------------~~~~~~~d~~-~l~-----~~~~k~ 160 (391)
T 3bwn_A 99 GSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRS------------GMYKWEGDAW-GFD-----KKGPYI 160 (391)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCB------------TTEEEEEEST-TCC-----CCSCEE
T ss_pred ChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCC------------eEEEecCCHH-HcC-----CCCCEE
Confidence 99999997 577789999 999999999999999998884 5556666542 322 257899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceee
Q 045431 209 IFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGW 288 (433)
Q Consensus 209 i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~ 288 (433)
|+++|||||||.+++ +|++.++.++++||+||+|.+ +...++.. ..+++|+++||||++|++|+|+||
T Consensus 161 v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~~~~~l~~---~~~~~i~~~S~SK~~g~~GlRiG~ 228 (391)
T 3bwn_A 161 ELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----PHYTPITR---RQDHDIMLFTFSKITGHAGSRIGW 228 (391)
T ss_dssp EEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----TTTSCCCC---CBCCSEEEEEHHHHHSCGGGCEEE
T ss_pred EEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----CCCCcccc---CCCCeEEEEechhhcCCCccceEE
Confidence 999999999999997 354422223399999999983 22223322 356899999999999999999999
Q ss_pred eec-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC---------hhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 289 TVI-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG---------FKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 289 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
+++ +++++ +.+.........+++.++|.++.+++++.. ..+++++++.++++++.+.+.|++
T Consensus 229 ~~~~~~~l~--------~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 300 (391)
T 3bwn_A 229 ALVKDKEVA--------KKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKE 300 (391)
T ss_dssp EEECCHHHH--------HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCHHHH--------HHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 997 77764 667666655556689999999999987532 357899999999999999999998
Q ss_pred c-CCeeec-------------CCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHH
Q 045431 359 L-GFKVYG-------------GKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEA 424 (433)
Q Consensus 359 ~-g~~~~~-------------~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~ 424 (433)
+ ++.+.. +.+|+|+|++++.. +.+..+++++||.+.||..|+. +++++|||+..++++++++
T Consensus 301 ~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~---~~~~~~l~~~gV~v~pg~~fg~-~~~~iRis~~~~~e~i~~~ 376 (391)
T 3bwn_A 301 SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE---TDLVSELRRHKVMSRAGERCGS-DKKHVRVSMLSREDVFNVF 376 (391)
T ss_dssp CSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS---CCHHHHHHHTTEECEEGGGGTC-CTTEEEEESCSCHHHHHHH
T ss_pred CCCcccccCCccccccccccCCCcceEEEecCCcH---HHHHHHHHHCCEEEccCCCCCC-CCCEEEEEecCCHHHHHHH
Confidence 7 666543 24567999999742 2445566677999999999975 5689999998889999999
Q ss_pred HHHHHHhh
Q 045431 425 CKRFKHLY 432 (433)
Q Consensus 425 l~~l~~~l 432 (433)
+++|++++
T Consensus 377 ~~~L~~~~ 384 (391)
T 3bwn_A 377 LERLANMK 384 (391)
T ss_dssp HHHHHSCC
T ss_pred HHHHHHHH
Confidence 99998875
No 57
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=100.00 E-value=3e-43 Score=343.13 Aligned_cols=338 Identities=17% Similarity=0.174 Sum_probs=262.8
Q ss_pred CCceEEecCC---CCCCCCh--HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccC--CCCCC--cEEEc
Q 045431 62 DAEVISLGIG---DTTEPIP--EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDL--GIEEG--DIFVS 132 (433)
Q Consensus 62 ~~~~i~l~~g---~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~--~~~~~--~i~~~ 132 (433)
.+++|+|+.| +|+.+.| +.+.+++.+.+.. .....|++..|.++||+++++++.+.. .++++ +|++|
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 123 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA----GLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQA 123 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc----CCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEEC
Confidence 3478999999 5655444 8999999998874 345689889999999999999996522 23678 99999
Q ss_pred CChHHHHHHH---HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC-------C
Q 045431 133 DGAKCDISRL---QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS-------T 202 (433)
Q Consensus 133 ~G~~~al~~l---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 202 (433)
+|+++++.++ ..++++||+|++++|+|+++...++..| .+++.++..++.++..+++ .
T Consensus 124 ~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~ 191 (420)
T 4f4e_A 124 LGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAG------------FEVVAYPYYDAKTNGVNFDGMLAALNG 191 (420)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTT------------CCEEEEECEETTTTEECHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcC------------CeEEEeeeeccccCccCHHHHHHHHHh
Confidence 9999999874 4567999999999999999999999999 4778888732223333322 1
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcccccCCCCcceEEEecccccc
Q 045431 203 -VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN--PRSIFEIPGAKEVAIETSSFSKYA 279 (433)
Q Consensus 203 -~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~vi~i~S~sK~~ 279 (433)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+.+..+++++++||||.+
T Consensus 192 ~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 271 (420)
T 4f4e_A 192 YEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF 271 (420)
T ss_dssp CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC
Confidence 14678888889999999999999999999999999999999999999888642 344444433457899999999999
Q ss_pred cccccceeeeec--c-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHHHH
Q 045431 280 GFTGVRLGWTVI--P-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENTDI 351 (433)
Q Consensus 280 ~~~G~r~G~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~ 351 (433)
|++|+|+||+++ + ++++. ++...+.......+..++.+.|.++..++.+.. .+++++++++++++++.
T Consensus 272 ~~~G~RiG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 4f4e_A 272 SLYGERVGALSIITDSKDEAA----RVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG 347 (420)
T ss_dssp TCGGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCcEEEEEEcCCHHHHH----HHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999864 2 33320 001223322334455578899998888887543 35689999999999999
Q ss_pred HHHHHhhc----CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHH
Q 045431 352 IVETFNSL----GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACK 426 (433)
Q Consensus 352 l~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~ 426 (433)
+.+.|+++ |+.+..+.+|+|+|+.++ .+.+..+++++||.+.|+ .||+++. ++++++++++
T Consensus 348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l~~~gI~v~~~----------~Ris~~~~~~~~i~~~~~ 413 (420)
T 4f4e_A 348 LVERLKAAGIERDFSFINAQRGMFSYSGLT----SAQVDRLREEFGIYAVST----------GRICVAALNTRNLDVVAN 413 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHSCSSEEECCCC----HHHHHHHHHHHCEECCTT----------SEEEGGGCCTTTHHHHHH
T ss_pred HHHHHHhcCCCCCceeECCCccEEEEeCCC----HHHHHHHHHhCCEEecCC----------CeEEEecCCHHHHHHHHH
Confidence 99999987 677777789999998874 245566666779999884 2999865 8888999999
Q ss_pred HHHHhhC
Q 045431 427 RFKHLYK 433 (433)
Q Consensus 427 ~l~~~l~ 433 (433)
+|+++++
T Consensus 414 ~l~~~l~ 420 (420)
T 4f4e_A 414 AIAAVLK 420 (420)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999874
No 58
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=100.00 E-value=1.5e-43 Score=343.29 Aligned_cols=338 Identities=14% Similarity=0.142 Sum_probs=257.5
Q ss_pred CCceEEecCCCC-CCCCh----HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEE--c
Q 045431 62 DAEVISLGIGDT-TEPIP----EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFV--S 132 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~----~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~--~ 132 (433)
.+.+|+|+.|.| +...+ +.+.+++.+.... ....+|.+..|.++||+++++++.+ ++.+++++|++ |
T Consensus 27 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t 102 (401)
T 7aat_A 27 NSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK----KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQG 102 (401)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCceeeeeeeEECCCCCEechHHHHHHHHHhccc----ccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEec
Confidence 345899999997 65433 3566666665542 3456898889999999999999975 44456899987 9
Q ss_pred CChHHHHHHH-HHh---cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC-------C
Q 045431 133 DGAKCDISRL-QIV---FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL-------S 201 (433)
Q Consensus 133 ~G~~~al~~l-~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 201 (433)
+|+++++.++ ..+ +++||+|++++|+|.++...++..| .+++.++.+++.++..++ +
T Consensus 103 ~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~ 170 (401)
T 7aat_A 103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAG------------LQLQAYRYYDPKTCSLDFTGAMEDIS 170 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcC------------CeeEeeeeeccccCccCHHHHHHHHH
Confidence 9999999963 333 4899999999999999999999998 477888875432222222 2
Q ss_pred C-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC---CCcccccCCCCcceEEEecccc
Q 045431 202 T-VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN---PRSIFEIPGAKEVAIETSSFSK 277 (433)
Q Consensus 202 ~-~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~vi~i~S~sK 277 (433)
+ .++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+....+++++++||||
T Consensus 171 ~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 250 (401)
T 7aat_A 171 KIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAK 250 (401)
T ss_dssp TSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred hCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCc
Confidence 2 25678889999999999999999999999999999999999999999887642 2223222223567899999999
Q ss_pred cccccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHH
Q 045431 278 YAGFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENT 349 (433)
Q Consensus 278 ~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 349 (433)
++|++|+|+||+++ +++.. ..+...+..........++...|.++..++.+.. .++++++++++++++
T Consensus 251 ~~~~~G~RiG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 326 (401)
T 7aat_A 251 NMGLYGERAGAFTVICRDAEEA----KRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMR 326 (401)
T ss_dssp TSCCGGGCEEEEEEECSSHHHH----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCceEEEEEEeCCHHHH----HHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886 33321 0012444544445555677888888777776432 245788899999999
Q ss_pred HHHHHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHH
Q 045431 350 DIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEA 424 (433)
Q Consensus 350 ~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~ 424 (433)
+.+.+.|++++ +.+..|.+++|+|+.++ .+.+..+++++||.+.|+ +||+++ .++++++++
T Consensus 327 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~gi~v~~~----------~Ris~~~~~~~~i~~~ 392 (401)
T 7aat_A 327 TQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----PEQVERLTKEFSIYMTKD----------GRISVAGVASSNVGYL 392 (401)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHhcCCCCCCceecCCcceEEecCCC----HHHHHHHHHhCCEeccCC----------CeEEeccCChhhHHHH
Confidence 99999999875 66667789999998775 355677777789999753 799985 477779999
Q ss_pred HHHHHHhhC
Q 045431 425 CKRFKHLYK 433 (433)
Q Consensus 425 l~~l~~~l~ 433 (433)
+++|+++++
T Consensus 393 ~~~l~~~~~ 401 (401)
T 7aat_A 393 AHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998864
No 59
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=1.8e-42 Score=330.22 Aligned_cols=320 Identities=17% Similarity=0.251 Sum_probs=255.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++|+|+.|++++++|+.+ ++ .....|++. +..+||+++|+++ ++++++|++|+|+++++.+ +
T Consensus 30 ~~i~l~~~~~~~~~~~~v------a~------~~~~~Y~~~-~~~~lr~~la~~~----~~~~~~v~~~~G~~~ai~~~~ 92 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL------TQ------QTLNRYPEC-QPKAVIENYAQYA----GVKPEQVLVSRGADEGIELLI 92 (356)
T ss_dssp CSEECSSCCCSSCCCCCC------CC------CCTTSCCCS-SCHHHHHHHHHHH----TSCGGGEEEESHHHHHHHHHH
T ss_pred ceEEeeCCCCCCCCCHhH------hh------hhhccCCCc-cHHHHHHHHHHHh----CCChHHEEEcCCHHHHHHHHH
Confidence 589999999988877765 11 234678654 6999999999998 7888999999999999997 5
Q ss_pred HHhcCCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-CCCccEEEEcCCCCccc
Q 045431 143 QIVFGSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-VARTDIIFFCSPNNPTG 219 (433)
Q Consensus 143 ~~l~~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~l~~p~nPtG 219 (433)
..++++| |+|++++|+|+++...++..| .+++.++.+.+...+.+ +++ ..++++|++++||||||
T Consensus 93 ~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~v~l~~p~nptG 160 (356)
T 1fg7_A 93 RAFCEPGKDAILYCPPTYGMYSVSAETIG------------VECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTG 160 (356)
T ss_dssp HHHCCTTTCEEEECSSSCTHHHHHHHHHT------------CEEEECCCCTTSCCCHHHHHTSCTTEEEEEEESSCTTTC
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEeeCCCCCCCCHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 7778999 999999999999999999888 47777877643222211 221 12789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccC
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSD 299 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~ 299 (433)
.+++.+++++|+++|+ +|+++|+||+|+++... .++..+....+++++++||||++|++|+|+||++++++++
T Consensus 161 ~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~--- 233 (356)
T 1fg7_A 161 QLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVI--- 233 (356)
T ss_dssp CCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHH---
T ss_pred CCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHH---
Confidence 9999999999999999 99999999999987521 2333332234678999999999999999999999988874
Q ss_pred CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEEECCC
Q 045431 300 GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFPG 378 (433)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~ 378 (433)
+.+..... .++.+.++|.++.+++++.+.+++++.+++++++++.+.+.|++++ +....+.+|+|+|++++
T Consensus 234 -----~~l~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~- 305 (356)
T 1fg7_A 234 -----NLLMKVIA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK- 305 (356)
T ss_dssp -----HHHHHHSC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-
T ss_pred -----HHHHHhcC--CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-
Confidence 55554332 3368899999999999854434588999999999999999999885 32334568899999997
Q ss_pred CChHHHHHHHHHcCCeEecC-CCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 379 RSSWDVFSEILEKTHVVTTP-GSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 379 ~~~~~~~~~l~~~~gi~v~~-g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..++...+ .++||.++| |..|+. ++++||++. +++++++++++|++++
T Consensus 306 -~~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~-~~~e~~~~~~~l~~~~ 355 (356)
T 1fg7_A 306 -ASSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG-TREESQRVIDALRAEQ 355 (356)
T ss_dssp -THHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC-CHHHHHHHHHHHHTCC
T ss_pred -CHHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC-CHHHHHHHHHHHHhhc
Confidence 566677776 566999999 887764 469999985 6899999999998753
No 60
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=5.2e-42 Score=327.65 Aligned_cols=328 Identities=16% Similarity=0.267 Sum_probs=263.7
Q ss_pred CCCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 61 PDAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+++++|||+.|.+++++|+.+.+++.+.+.. ...| +..+..++|+++++++ ++++++|++|+|+++++.
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~l~~~la~~~----~~~~~~i~~~~g~t~al~ 92 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKN------LGVY-PDVNYRRLNKSIENYL----KLKDIGIVLGNGASEIIE 92 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHG------GGSC-CCTTCHHHHHHHHHHH----TCCSCEEEEESSHHHHHH
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHH------hcCC-CCccHHHHHHHHHHHh----CCCcceEEEcCCHHHHHH
Confidence 3557999999999888999999999998864 2456 4578999999999998 788999999999999999
Q ss_pred HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-CCCccEEEEcCCCCcc
Q 045431 141 RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-VARTDIIFFCSPNNPT 218 (433)
Q Consensus 141 ~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~l~~p~nPt 218 (433)
++...+ |+|++++|+|.++...++..| .+++.++.+.++++..+ +++ ..+++++++++|||||
T Consensus 93 ~~~~~~---d~vi~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~i~~p~npt 157 (361)
T 3ftb_A 93 LSISLF---EKILIIVPSYAEYEINAKKHG------------VSVVFSYLDENMCIDYEDIISKIDDVDSVIIGNPNNPN 157 (361)
T ss_dssp HHHTTC---SEEEEEESCCTHHHHHHHHTT------------CEEEEEECCTTSCCCHHHHHHHTTTCSEEEEETTBTTT
T ss_pred HHHHHc---CcEEEecCChHHHHHHHHHcC------------CeEEEeecCcccCCCHHHHHHhccCCCEEEEeCCCCCC
Confidence 865555 999999999999999999988 47888888765555432 221 1128999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeee-ccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV-IPKELLF 297 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~-~~~~~~~ 297 (433)
|.+++.+++++|+++|++||+++|+||+|+++.++ .+.+........+++++++|+||.+|++|+|+||++ .+++++
T Consensus 158 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~- 235 (361)
T 3ftb_A 158 GGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIA- 235 (361)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHH-
T ss_pred CCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHH-
Confidence 99999999999999999999999999999988776 333344443345788999999999999999999998 777664
Q ss_pred cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe-eecCCCccEEEEE
Q 045431 298 SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK-VYGGKNAPYVWVQ 375 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~~g~~~~~~ 375 (433)
+.+..... ..+.+.++|.++.+++++ .+++++.+++++++++.+.+.|+++ ++. +.+ ..|.|+|++
T Consensus 236 -------~~~~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~ 303 (361)
T 3ftb_A 236 -------AKIKAKQN--PWNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFS-PHANFVLCR 303 (361)
T ss_dssp -------HHHHTTSC--TTCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEC-CSSSEEEEE
T ss_pred -------HHHHhhCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecC-CCCeEEEEE
Confidence 55554332 346789999999999984 4678999999999999999999998 787 555 467889999
Q ss_pred CCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 376 FPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 376 ~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
+++.+..++...+.++ ||.+.||..|+..+++++||++. +.++++++++.|++
T Consensus 304 ~~~~~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~ 356 (361)
T 3ftb_A 304 LENISGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKG 356 (361)
T ss_dssp ESSSCHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHH
Confidence 9876677777777665 99999999998777899999986 44454444444444
No 61
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=100.00 E-value=7.9e-43 Score=340.09 Aligned_cols=335 Identities=16% Similarity=0.185 Sum_probs=262.7
Q ss_pred CCceEEecCCCC-----CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCCh
Q 045431 62 DAEVISLGIGDT-----TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGA 135 (433)
Q Consensus 62 ~~~~i~l~~g~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~ 135 (433)
+.++|+|+.|.| ++++++.+.+++.+... .....|++..|.++||+++++++.+..+. .+++|++|+|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~ 111 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSD-----SEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGG 111 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCH-----HHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcc-----cccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCch
Confidence 447899999987 67788888887766432 22357888899999999999998653221 12399999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----C----CC
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----V----AR 205 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~ 205 (433)
++++.+ +..++++||+|++++|+|+++...++..| .+++.++.++++ +..+++. . ++
T Consensus 112 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~~ 178 (418)
T 3rq1_A 112 TGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTG------------RTLVTYSLFDEH-NNFNHEAFQNRVNELAAKQ 178 (418)
T ss_dssp HHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECSBCTT-SSBCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcC------------CEEEEEeeeCCC-CCcCHHHHHHHHHHhhccC
Confidence 999997 67888999999999999999999999999 478888875443 2233221 1 15
Q ss_pred cc-EEEEcCC-CCccccCCCHHHHHHHHHHHH------HcCCEEEEeccccccccCCC-CCccc-ccCCCCcc--eEEEe
Q 045431 206 TD-IIFFCSP-NNPTGAAATREQLTRLVQFAK------DNGSIIVYDSAYALYISDDN-PRSIF-EIPGAKEV--AIETS 273 (433)
Q Consensus 206 ~~-~i~l~~p-~nPtG~~~~~~~~~~i~~~a~------~~~~~li~De~~~~~~~~~~-~~~~~-~~~~~~~~--vi~i~ 273 (433)
++ ++++++| |||||.+++.+++++|+++|+ +||++||+||+|.++.+++. ..++. ..++..++ +++++
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 258 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCY 258 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEE
Confidence 55 7778899 999999999999999999999 89999999999998877643 22332 23333444 58899
Q ss_pred cccccccccccceeeeec---cccccccCCcchhHHHHHHHhh----ccCCCcHHHHHHHHHhcCcCC----h-hHHHHH
Q 045431 274 SFSKYAGFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCT----CFNGASNISQAGGLACLSPEG----F-KAVHEV 341 (433)
Q Consensus 274 S~sK~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~~~~----~-~~~~~~ 341 (433)
||||.+|++|+|+||+++ +++++ +.+...... ....++.++|.++.+++++.. + ++++++
T Consensus 259 S~sK~~~~~G~r~G~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 330 (418)
T 3rq1_A 259 SLSKGFTMYGQRVGAMIGISDDEEIA--------DEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCY 330 (418)
T ss_dssp ESTTTTTCCSSCCEEEEEEESSHHHH--------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eCCCCCcCcCCcceEEEEEeCCHHHH--------HHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999998 77774 555443322 234578999999999998643 1 345677
Q ss_pred HHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhH
Q 045431 342 IGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGN 420 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~ 420 (433)
++.++++++.+.+.|+++|+.+..+.+++|+|++++ +..++... ++++||.+.|| .+++||+++ .++++
T Consensus 331 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~-l~~~gi~v~~g-------~~~iRis~~~~~~~~ 400 (418)
T 3rq1_A 331 YQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTD--SANAICEE-LKKEHIYVIAL-------ANGIRIAACGIPKCQ 400 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECT--THHHHHHH-HHHTTEECEEC-------SSEEEEEGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCC--CHHHHHHH-HHhCCEEEecC-------CCCeEEEEecCCHHH
Confidence 889999999999999998999888889999999885 45666655 46679999997 367999986 49999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 401 i~~~~~~l~~~l 412 (418)
T 3rq1_A 401 MTGLAEKIYNAM 412 (418)
T ss_dssp HTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 62
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=1.7e-42 Score=331.78 Aligned_cols=328 Identities=17% Similarity=0.265 Sum_probs=270.4
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHHHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCDISR 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~al~~ 141 (433)
+.+|+|+.|++++++|+.+.+++.+.+... ....|++ .+..+||+++++++ ++ ++++|++|+|+++++.+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~-~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~~ 100 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEV----ALNRYPV-PSSEALRAKLKEVM----QVPAGMEVLLGNGSDEIISM 100 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHH----HTTCSCC-CCHHHHHHHHHHHH----TCCTTCEEEEEEHHHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhh----hhhcCCC-CcHHHHHHHHHHHh----CCCCcceEEEcCCHHHHHHH
Confidence 468999999999999999999999988642 3456754 58999999999998 77 78899999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCC
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNN 216 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~n 216 (433)
+..++++||+|++++|+|.++...++..| .+++.++.+.+..++.+ +++ .+ ++++|++++|||
T Consensus 101 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~n 168 (367)
T 3euc_A 101 LALAAARPGAKVMAPVPGFVMYAMSAQFAG------------LEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNN 168 (367)
T ss_dssp HHHHTCCTTCEEEEEESCSCCSCHHHHTTT------------CEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCT
T ss_pred HHHHHcCCCCEEEEcCCCHHHHHHHHHHcC------------CeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCC
Confidence 57778999999999999999999888888 47888888753333222 221 13 789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHc--CCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 217 PTGAAATREQLTRLVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~--~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||.+++.+++++|+++|++| |+++|+||+|+++...+ ..+ .++ ..+++++++||||. +++|+|+||++++++
T Consensus 169 ptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~--~~~-~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~ 243 (367)
T 3euc_A 169 PTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMS--RLT-DFGNLLVMRTVSKL-GLAGIRLGYVAGDPQ 243 (367)
T ss_dssp TTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGG--GGG-TCTTEEEEEECCCT-TSCSCCEEEEEECHH
T ss_pred CCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHH--HHh-hCCCEEEEecchhh-cccccCceeeeeCHH
Confidence 999999999999999999999 99999999999876433 222 222 24678999999999 789999999999887
Q ss_pred ccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEE
Q 045431 295 LLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVW 373 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~ 373 (433)
++ +.+.... ...+.+.++|.++.++++. ..++++.+++++++++.+.+.|+++ |+.+. +..++|+|
T Consensus 244 ~~--------~~~~~~~--~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~ 310 (367)
T 3euc_A 244 WL--------EQLDKVR--PPYNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLL 310 (367)
T ss_dssp HH--------HHHGGGC--CSSCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEE
T ss_pred HH--------HHHHHhC--CCCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEE
Confidence 74 4444332 2345889999999999986 5678999999999999999999998 88865 46888999
Q ss_pred EECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 374 VQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
++++ +..++...+ .++||.+.+|..|+...++++||++. +++++++++++|+++++
T Consensus 311 ~~~~--~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 311 ARVP--DAAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp EECS--CHHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred EECC--CHHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 9998 566666665 56699999999887666789999976 89999999999999874
No 63
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=100.00 E-value=1.9e-43 Score=344.99 Aligned_cols=339 Identities=16% Similarity=0.195 Sum_probs=269.8
Q ss_pred ceEEecCCCCC---CCChHHHHHHHH--HHHhhcccCCCCCCC-CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDTT---EPIPEVITSALA--KRSYALSTQEGYSGY-GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~---~~~~~~~~~a~~--~~~~~~~~~~~~~~Y-~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
..|+|+.|.|+ ++.|+.+.+++. +.+.. ......| ++..|.++||+++|+++ ++++++|++|+|+++
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~---~~~~~~Yp~~~~g~~~lr~~ia~~~----~~~~~~i~~t~G~~~ 98 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMD---GLDLRNYPGGVAGLPSARALFAGYL----DVKAENVLVWNNSSL 98 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEET---TEETTSSCSCTTCCHHHHHHHHHHT----TSCGGGEEECSSCHH
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhc---chhhhCCCCCCCChHHHHHHHHHHh----CCChhhEEEeCCcHH
Confidence 47999999998 677878888775 43331 1334689 88899999999999998 788999999999999
Q ss_pred HHH--H-HHHhcC--C---------CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC
Q 045431 138 DIS--R-LQIVFG--S---------NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST 202 (433)
Q Consensus 138 al~--~-l~~l~~--~---------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 202 (433)
++. + +..++. + ||+|++++|+|+++...++..| .+++.++.+.+ +++.+ +++
T Consensus 99 al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~~ 165 (423)
T 3ez1_A 99 ELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLG------------FELLTVDMQSD-GPDVDAVER 165 (423)
T ss_dssp HHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHT------------CEEEEEEEETT-EECHHHHHH
T ss_pred HHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcC------------CEEEeccCCCC-CCCHHHHHH
Confidence 996 5 567777 8 5999999999999999999999 47888887654 33222 221
Q ss_pred ----CCCccEEEEc-CCCCccccCCCHHHHHHHHHHH-HHcCCEEEEeccccccccCC-C---CCccccc---CCCCcce
Q 045431 203 ----VARTDIIFFC-SPNNPTGAAATREQLTRLVQFA-KDNGSIIVYDSAYALYISDD-N---PRSIFEI---PGAKEVA 269 (433)
Q Consensus 203 ----~~~~~~i~l~-~p~nPtG~~~~~~~~~~i~~~a-~~~~~~li~De~~~~~~~~~-~---~~~~~~~---~~~~~~v 269 (433)
.+++++|+++ +||||||.+++.+++++|+++| ++||++||+||+|..+.+.+ . +.++.++ .+..+++
T Consensus 166 ~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (423)
T 3ez1_A 166 LAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRA 245 (423)
T ss_dssp HHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSE
T ss_pred HHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeE
Confidence 3678888765 8999999999999999999999 99999999999999654443 1 2344433 1235789
Q ss_pred EEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc--CCh-hHHHHHHHHHH
Q 045431 270 IETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP--EGF-KAVHEVIGFYK 346 (433)
Q Consensus 270 i~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~-~~~~~~~~~~~ 346 (433)
++++||||++ ++|+|+||++++++++ +.+.........+++.+.|.++.+++.+ ... +++++.++.++
T Consensus 246 i~~~S~sK~~-~~G~r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 316 (423)
T 3ez1_A 246 FVFASTSKIT-FAGAGLGFVASSEDNI--------RWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIA 316 (423)
T ss_dssp EEEEESTTTS-CSSSSCEEEEECHHHH--------HHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred EEEeCchhhc-cCCcceEEEEeCHHHH--------HHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999995 6999999999998885 6777777767777899999999998886 322 57888888999
Q ss_pred HHHHHHHHHHhh----cC--CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecC-CCCCCC---CCCCeEEEeecc
Q 045431 347 ENTDIIVETFNS----LG--FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP-GSGFGP---GGEGFIRVSAFG 416 (433)
Q Consensus 347 ~~~~~l~~~l~~----~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-g~~f~~---~~~~~iRi~~~~ 416 (433)
++++.+.+.|.+ .| +.+..|.+|+|+|++++..+...+. .+++++||.+.| |..|+. ..++++||++..
T Consensus 317 ~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~-~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~ 395 (423)
T 3ez1_A 317 PKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVV-KLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTR 395 (423)
T ss_dssp HHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHH-HHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSS
T ss_pred HHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHH-HHHHHCCcEEecCcccccCCCCCCCCeEEEEcCC
Confidence 998888877765 44 6777788999999999865545554 445667999999 766753 357899999865
Q ss_pred -ChhHHHHHHHHHHHhh
Q 045431 417 -HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 -~~~~l~~~l~~l~~~l 432 (433)
+++++++++++|++++
T Consensus 396 ~~~~~i~~~~~~l~~~l 412 (423)
T 3ez1_A 396 PPVEEVRTAMQVVAACI 412 (423)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 8999999999999875
No 64
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=100.00 E-value=1.3e-42 Score=336.09 Aligned_cols=338 Identities=20% Similarity=0.206 Sum_probs=261.0
Q ss_pred CCCceEEecCC---CCCCCCh--HHHHHHHHH-HHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccC--CCCCC--cEE
Q 045431 61 PDAEVISLGIG---DTTEPIP--EVITSALAK-RSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDL--GIEEG--DIF 130 (433)
Q Consensus 61 ~~~~~i~l~~g---~~~~~~~--~~~~~a~~~-~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~--~~~~~--~i~ 130 (433)
..+++|+|+.| +++.++| +.+.+++.+ .+.. .....|++..|.+++|+++++++.+.. .++++ +|+
T Consensus 24 ~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~ 99 (397)
T 3fsl_A 24 PRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP----HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATI 99 (397)
T ss_dssp CCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc----cccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEE
Confidence 34568999999 4554444 899999998 7753 345689888999999999999996522 23678 999
Q ss_pred EcCChHHHHHHH---HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----
Q 045431 131 VSDGAKCDISRL---QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST----- 202 (433)
Q Consensus 131 ~~~G~~~al~~l---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 202 (433)
+|+|+++++.++ ..++++||+|++++|+|+++...++..| .+++.++..++.++..+++.
T Consensus 100 ~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l 167 (397)
T 3fsl_A 100 QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAG------------FEVSTYPWYDEATNGVRFNDLLATL 167 (397)
T ss_dssp EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTT------------CCEEEECCEETTTTEECHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcC------------CceEEEeeeeccCCcCcHHHHHHHH
Confidence 999999999874 4567999999999999999999999998 47778887332233333221
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCcccccCCCCcceEEEecccc
Q 045431 203 ---VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIFEIPGAKEVAIETSSFSK 277 (433)
Q Consensus 203 ---~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~vi~i~S~sK 277 (433)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++ ...++..+....+++++++||||
T Consensus 168 ~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 247 (397)
T 3fsl_A 168 KTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp TTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred HhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence 1467788888999999999999999999999999999999999999988763 23444444334678999999999
Q ss_pred cccccccceeeeecc---ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHH
Q 045431 278 YAGFTGVRLGWTVIP---KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENT 349 (433)
Q Consensus 278 ~~~~~G~r~G~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 349 (433)
++|++|+|+||++++ ++.+. ++...+..........++.++|.++..++.+.. .++++++++++++++
T Consensus 248 ~~~~~G~riG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCEDAEAAG----RVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCCHHHHH----HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999753 23320 001112222223445568899998888887542 356889999999999
Q ss_pred HHHHHHHhhc----CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHH
Q 045431 350 DIIVETFNSL----GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEA 424 (433)
Q Consensus 350 ~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~ 424 (433)
+.+.+.|+++ |+.+..+.+|+|+|++++ .+.+..+++++||.+.||. ||+++. ++++++++
T Consensus 324 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g~----------Ris~~~~~~~~i~~~ 389 (397)
T 3fsl_A 324 QELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----AAQVDRLREEFGVYLIASG----------RMCVAGLNTANVQRV 389 (397)
T ss_dssp HHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----HHHHHHHHHTTCEECCTTC----------EEEGGGCCTTTHHHH
T ss_pred HHHHHHHHhcCCCCCceeecCCceEEEecCCC----HHHHHHHHHhCCEEECCCC----------eEEEEecCHhhHHHH
Confidence 9999999987 677777789999998875 2446666778899999873 999866 88889999
Q ss_pred HHHHHHhh
Q 045431 425 CKRFKHLY 432 (433)
Q Consensus 425 l~~l~~~l 432 (433)
+++|++++
T Consensus 390 ~~~l~~~l 397 (397)
T 3fsl_A 390 AKAFAAVM 397 (397)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhC
Confidence 99999864
No 65
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=100.00 E-value=4.4e-43 Score=350.69 Aligned_cols=343 Identities=16% Similarity=0.202 Sum_probs=268.9
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC-CCCCCHHHHHHHHHHHhcc----CCCC-CCcEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG-AEQGEKPLRAAIASTFYKD----LGIE-EGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~la~~l~~~----~~~~-~~~i~~~~G~~~ 137 (433)
.+|+|+.|.++.+ |+.+++++.+.+.. ..|+ +..|.+++|+++++++.+. +.++ +++|++|+|+++
T Consensus 104 ~~i~l~~g~~~~~-~~~~v~a~~~~~~~-------~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~ 175 (533)
T 3f6t_A 104 DAVNYCHTELGLN-RDKVVAEWVNGAVA-------NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTA 175 (533)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHHHT-------CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHH
T ss_pred hheeccCCCCCcC-CcHHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHH
Confidence 4689999999875 66666666666642 2444 6789999999999999543 3343 479999999999
Q ss_pred HHHHH-HH-----hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc--cCCcccCCCC-----CC
Q 045431 138 DISRL-QI-----VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENGFFPDLST-----VA 204 (433)
Q Consensus 138 al~~l-~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~ 204 (433)
++.++ .. ++++||+|++++|+|.++...++..| .+++.++++. +.++..+++. .+
T Consensus 176 al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~d~~~l~~~l~~ 243 (533)
T 3f6t_A 176 AIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKD------------YELVEVDLHSYEKNDWEIEPNEIEKLKDP 243 (533)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGG------------SEEEEECCCEETTTTSEECHHHHHHHSCT
T ss_pred HHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcC------------CeEEEEEecCCcccCCCCCHHHHHHHhCC
Confidence 99974 55 68999999999999999999888888 4777777754 3333333321 36
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHH-HcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAK-DNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG 283 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G 283 (433)
++++|++++||||||.+++.+++++|+++|+ +||++||+||+|+++.++ +.++.... ++++++++||||.+|++|
T Consensus 244 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~--~~~~~~~~--~~~~i~~~S~SK~~g~~G 319 (533)
T 3f6t_A 244 SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIYSVV--PYNTMLVYSYSKLFGCTG 319 (533)
T ss_dssp TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT--CCCHHHHS--GGGEEEEEESHHHHTCGG
T ss_pred CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC--ccCHhhcC--CCCEEEEecCcccCCCcc
Confidence 8899999999999999999999999999999 689999999999988764 34454442 468999999999999999
Q ss_pred cceeeeecccc-----ccccCC--------------------c----chhHHHHHHHhhccCCCcHHHHHH----HHHhc
Q 045431 284 VRLGWTVIPKE-----LLFSDG--------------------F----PVAKDFNRIVCTCFNGASNISQAG----GLACL 330 (433)
Q Consensus 284 ~r~G~l~~~~~-----~~~~~~--------------------~----~~~~~~~~~~~~~~~~~~~~~q~~----~~~~l 330 (433)
+|+||++++++ ++.... . ++.+.+.+.......+++.+.|.+ +..++
T Consensus 320 ~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L 399 (533)
T 3f6t_A 320 WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHL 399 (533)
T ss_dssp GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Confidence 99999999887 321100 0 011122333444556678888987 55666
Q ss_pred C-----cCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC-----------------CChHHHHHHH
Q 045431 331 S-----PEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-----------------RSSWDVFSEI 388 (433)
Q Consensus 331 ~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~-----------------~~~~~~~~~l 388 (433)
. +...++++++++.++++++.+.+.|. .++.+..+.+++|+|++++. .++.+++..+
T Consensus 400 ~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 478 (533)
T 3f6t_A 400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKL 478 (533)
T ss_dssp TTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHH
Confidence 5 23447889999999999999999998 78888888899999999863 3566788888
Q ss_pred HHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 389 LEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 389 ~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
++++||.+.||..|+. +++++||+++. +++++++++++|++++
T Consensus 479 l~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l 522 (533)
T 3f6t_A 479 AEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELL 522 (533)
T ss_dssp HHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHH
Confidence 8888999999999976 46899999874 8999999999999875
No 66
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=100.00 E-value=3.5e-42 Score=335.01 Aligned_cols=332 Identities=18% Similarity=0.273 Sum_probs=258.0
Q ss_pred CCceEEecCCCC-----CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCC-CCCCcEEEcCCh
Q 045431 62 DAEVISLGIGDT-----TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG-IEEGDIFVSDGA 135 (433)
Q Consensus 62 ~~~~i~l~~g~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~-~~~~~i~~~~G~ 135 (433)
+.++|+|+.|++ ++++|+.+.+++.+... .....|++..|.+++|+++++++.+..+ .++++|++|+|+
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-----~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~ 110 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDR-----SHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGG 110 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCH-----HHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCc-----ccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCcc
Confidence 447999999997 67788888888766332 2345788888999999999999865221 244599999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CC----C
Q 045431 136 KCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VA----R 205 (433)
Q Consensus 136 ~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~ 205 (433)
++++.+ +..++++||+|++++|+|+++...++..| .+++.++..+++ +..+++. .. +
T Consensus 111 ~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~ 177 (413)
T 3t18_A 111 TGAIRSAIFSYLDEGDPLICHDYYWAPYRKICEEFG------------RNFKTFEFFTDD-FAFNIDVYKEAIDEGIRDS 177 (413)
T ss_dssp HHHHHHHHHHHCCSSCEEEEESSCCTHHHHHHHHHT------------CEEEEECCBCTT-SSBCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCcccHHHHHHHhC------------CeEEEeeccCCC-CCcCHHHHHHHHHHHhhcC
Confidence 999997 67888999999999999999999999999 478888874433 2223221 11 5
Q ss_pred cc-EEEEcCC-CCccccCCCHHHHHHHHHHHH------HcCCEEEEeccccccccCCC-CCccc-ccCCCCcc--eEEEe
Q 045431 206 TD-IIFFCSP-NNPTGAAATREQLTRLVQFAK------DNGSIIVYDSAYALYISDDN-PRSIF-EIPGAKEV--AIETS 273 (433)
Q Consensus 206 ~~-~i~l~~p-~nPtG~~~~~~~~~~i~~~a~------~~~~~li~De~~~~~~~~~~-~~~~~-~~~~~~~~--vi~i~ 273 (433)
++ ++++++| |||||.+++.+++++|+++|+ +||++||+||+|.++.+++. ..++. ..++.+++ +++++
T Consensus 178 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (413)
T 3t18_A 178 DRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAF 257 (413)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEE
Confidence 66 6777899 999999999999999999999 89999999999999888764 23433 33333444 48899
Q ss_pred cccccccccccceeeeec---cccccccCCcchhHHHHHHHhh----ccCCCcHHHHHHHHHhcCcCC---h-hHHHHHH
Q 045431 274 SFSKYAGFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCT----CFNGASNISQAGGLACLSPEG---F-KAVHEVI 342 (433)
Q Consensus 274 S~sK~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~~~~---~-~~~~~~~ 342 (433)
||||.+|++|+|+||+++ +++++ +.+...... .+..++.++|.++.+++++.. + +++++++
T Consensus 258 S~sK~~~~~G~riG~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 329 (413)
T 3t18_A 258 SMSKSHTAYGLRSGAAVGISSSKEII--------EEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLR 329 (413)
T ss_dssp EHHHHTTCGGGCCEEEEEEESCHHHH--------HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred ecCccCCCcCcCcEEEEEecCCHHHH--------HHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 999999999999999998 77774 555443322 224578999999988888543 2 4567888
Q ss_pred HHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHH
Q 045431 343 GFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNV 421 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l 421 (433)
+.++++++.+.+.|+++|+.+..+.+++|+|+++. +..++...+ .++||.+.|| ++++||++.. +++++
T Consensus 330 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~l-~~~gv~v~~g-------~~~iRis~~~~~~~~~ 399 (413)
T 3t18_A 330 NMLKSRADVFVTAAKENKLTMIPYFGGFFTFIPTD--KAFDIVKDL-EKENIFTIPS-------AKGIRVAICGVGEEKI 399 (413)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCBCCCSSSCEEEECS--CHHHHHHHH-HHTTEECEEC-------SSEEEECTTTSCGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCCceEEEEeCCC--CHHHHHHHH-HhCCEEEecC-------CCceEEEEeeCCHHHH
Confidence 99999999999999999999888889999999874 566666655 5669999997 4689999864 55555
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
+++|.+++
T Consensus 400 ---l~~l~~~l 407 (413)
T 3t18_A 400 ---PKLVQRLA 407 (413)
T ss_dssp ---HHHHHHHH
T ss_pred ---HHHHHHHH
Confidence 66665554
No 67
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=100.00 E-value=8.1e-43 Score=348.71 Aligned_cols=335 Identities=16% Similarity=0.225 Sum_probs=258.5
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHh-ccC--CC---CCCcEEEcCChHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFY-KDL--GI---EEGDIFVSDGAKCD 138 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~-~~~--~~---~~~~i~~~~G~~~a 138 (433)
+|+|+.|.+++ +++.+.+++.+.+. ...|+++.|.++||+++++++. ++. +. ++++|++|+|++++
T Consensus 106 ~i~l~~g~~~~-~~~~~~~al~~~~~-------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~ea 177 (546)
T 2zy4_A 106 SLSYVRDQLGL-DPAAFLHEMVDGIL-------GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAA 177 (546)
T ss_dssp HHHHHHHTSCC-CHHHHHHHHHHHHH-------TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHH
T ss_pred hhecccCCCCC-CChHHHHHHHHhhh-------cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHH
Confidence 78999999876 45666667776653 1479888899999999888764 322 22 46899999999999
Q ss_pred HHHH-HH-----hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCcc
Q 045431 139 ISRL-QI-----VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTD 207 (433)
Q Consensus 139 l~~l-~~-----l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 207 (433)
+.++ .. ++++||.|++++|+|+++.......+. + .+++.++.+.++++..+++. .++++
T Consensus 178 l~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~-g---------~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 247 (546)
T 2zy4_A 178 MAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQY-A---------LEEVAINADPSLNWQYPDSELDKLKDPAIK 247 (546)
T ss_dssp HHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTS-C---------CEEEEEECBGGGTTBCCHHHHGGGGSTTEE
T ss_pred HHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCC-C---------cEEEEEecCcccCCCCCHHHHHHhhCCCCe
Confidence 9974 44 478999999999999999887654431 1 36788888776665555332 25789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHH--HHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFA--KDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a--~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+|+++|||||||.+++.+++++|+++| +++|++||+||+|+++.++ +.++.+.. ++++|+++||||++|++|+|
T Consensus 248 ~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~~~--~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 248 IFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFAIC--PENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp EEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHHHC--GGGEEEEEESTTTTTCGGGC
T ss_pred EEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHHhC--CCCEEEEEeCccccCCCCcc
Confidence 999999999999999999999999999 7899999999999988753 45555542 46899999999999999999
Q ss_pred eeeeecccc-ccccCCcchhHHHHH-------------H-----------------------HhhccCCCcHHHHHHH--
Q 045431 286 LGWTVIPKE-LLFSDGFPVAKDFNR-------------I-----------------------VCTCFNGASNISQAGG-- 326 (433)
Q Consensus 286 ~G~l~~~~~-~~~~~~~~~~~~~~~-------------~-----------------------~~~~~~~~~~~~q~~~-- 326 (433)
+||++++++ ++ +.+.+ + ......+.+.+.|.++
T Consensus 324 iG~~~~~~~~l~--------~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~ 395 (546)
T 2zy4_A 324 LGVVAAHQQNVF--------DLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMAL 395 (546)
T ss_dssp EEEEEEESSCHH--------HHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHH
T ss_pred eEEEEECCHHHH--------HHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHH
Confidence 999999886 53 22210 0 0122345788888763
Q ss_pred ---HHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC-----------------CChHHHHH
Q 045431 327 ---LACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG-----------------RSSWDVFS 386 (433)
Q Consensus 327 ---~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~-----------------~~~~~~~~ 386 (433)
.+++.+ +..+++++++.++++++.+.+.|. .++.+.++.+++|+|++++. .++.+++.
T Consensus 396 ~a~~all~~-~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~ 473 (546)
T 2zy4_A 396 FSLFALMDE-ADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLF 473 (546)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHH
Confidence 244543 346789999999999999999886 55665677889999999852 13445566
Q ss_pred HHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 387 EILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 387 ~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
++++++||.+.||..|+. +++++||++.. +++++++++++|++++
T Consensus 474 ~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l 519 (546)
T 2zy4_A 474 RIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMA 519 (546)
T ss_dssp HHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHH
Confidence 777778999999999976 56899999876 7899999999998875
No 68
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=7.9e-42 Score=328.17 Aligned_cols=308 Identities=20% Similarity=0.319 Sum_probs=257.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCccc
Q 045431 96 EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGE 174 (433)
Q Consensus 96 ~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~ 174 (433)
.....|++..|.++||+++++++. ++++++|++|+|+++++.+ +..++++||+|++++|+|+++...++..|
T Consensus 54 ~~~~~y~~~~g~~~l~~~la~~~~---~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g---- 126 (375)
T 3op7_A 54 GTKLNYGWIEGSPAFKKSVSQLYT---GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLG---- 126 (375)
T ss_dssp TSCCSSCCTTCCHHHHHHHHTTSS---SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTT----
T ss_pred cCCcCCCCCCChHHHHHHHHHHhc---cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcC----
Confidence 345689899999999999999872 4678999999999999997 67788999999999999999999998888
Q ss_pred ccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc
Q 045431 175 FQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
.+++.++.+.++++..+++. .+++++|++++||||||.+++.+++++|+++|++||+++|+||+|++
T Consensus 127 --------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~ 198 (375)
T 3op7_A 127 --------AEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRS 198 (375)
T ss_dssp --------CEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCC
T ss_pred --------CEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 47888888755555444332 36889999999999999999999999999999999999999999998
Q ss_pred cccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHh
Q 045431 250 YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLAC 329 (433)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 329 (433)
+.+.+ ..++... .+++++++||||.+|++|+|+||++++++++ +.+.........+++.+.|.++..+
T Consensus 199 ~~~~~-~~~~~~~---~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (375)
T 3op7_A 199 FSELD-VPSIIEV---YDKGIAVNSLSKTYSLPGIRIGWVAANHQVT--------DILRDYRDYTMICAGVFDDLVAQLA 266 (375)
T ss_dssp CSSSC-CCCHHHH---CTTEEEEEESSSSSSCGGGCCEEEECCHHHH--------HHHTTTGGGTTSCCCHHHHHHHHHH
T ss_pred ccccC-CCchhhh---cCCEEEEeEChhhcCCcccceEEEEeCHHHH--------HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 77652 2333333 4567999999999998999999999988774 6666655555666788999888888
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCC
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGE 407 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 407 (433)
++. ...++++.++.++++++.+.+.|++. ++.+..+.+++++|+.++ +.+..++...+++++||.+.||..|+. +
T Consensus 267 l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~ 343 (375)
T 3op7_A 267 LAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER--D 343 (375)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC--T
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC--C
Confidence 763 33577888999999999999999987 788888888999999987 456778888887777999999998874 6
Q ss_pred CeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 408 GFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 408 ~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+++|+++..+.+++++++++|+++++
T Consensus 344 ~~iRi~~~~~~~~i~~~l~~l~~~l~ 369 (375)
T 3op7_A 344 GYVRLGFACEQETLIKGLEKLSQFLR 369 (375)
T ss_dssp TEEEECCCSCHHHHHHHHHHHHHHHG
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 89999998888999999999998763
No 69
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=8e-46 Score=358.18 Aligned_cols=342 Identities=20% Similarity=0.279 Sum_probs=275.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~ 141 (433)
++|+|+.|++++++|+.+.+++.+++.. ....|++. ..++|+++++++.+ ++.+++++|++|+|+++++.+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~ 104 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQ-----LVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISI 104 (392)
Confidence 7899999999999999999999998752 34567553 89999999999976 444788999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCC-cccC---CCC---CCCccEEEEcC
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG-FFPD---LST---VARTDIIFFCS 213 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~---~~~~~~i~l~~ 213 (433)
+..++++||+|++++|+|+++...++..|. +++.++.+++++ +..+ +++ ..+++++++++
T Consensus 105 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~------------~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~ 172 (392)
T 3b1d_A 105 AIQAFTKEGEAVLINSPVYPPFARSVRLNNR------------KLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCN 172 (392)
Confidence 577789999999999999999988887773 566666642222 2222 222 14688889999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCC-CcceEEEecccccccccccceeeeec
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGA-KEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~-~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
||||||.+++.+++++|+++|++||++||+||+|+++.+.+. +.++..++.. .+++++++||||.+|++|+|+||+++
T Consensus 173 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 252 (392)
T 3b1d_A 173 PHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAII 252 (392)
Confidence 999999999999999999999999999999999999887653 4455555321 46789999999999999999999999
Q ss_pred ccc-ccccCCcchhHHHHHHHhhcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-c-CCeeecCC
Q 045431 292 PKE-LLFSDGFPVAKDFNRIVCTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS-L-GFKVYGGK 367 (433)
Q Consensus 292 ~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~ 367 (433)
+++ ++ +.+........ .+++.++|.++.+++++ ..+++++.++.++++++.+.+.|++ + ++.+..+.
T Consensus 253 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 323 (392)
T 3b1d_A 253 ENPTLC--------AQFKHQQLVNNHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQ 323 (392)
Confidence 765 54 44544433332 34688899988888874 2457889999999999999999988 5 88888888
Q ss_pred CccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 368 NAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 368 ~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+++++|++++. .+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++++
T Consensus 324 ~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 324 GTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 88999999974 3556677777656799999999997666789999988888999999999998763
No 70
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=100.00 E-value=9.6e-42 Score=331.46 Aligned_cols=338 Identities=14% Similarity=0.133 Sum_probs=259.6
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhcc--CCCCCCcEE--EcCCh
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD--LGIEEGDIF--VSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~--~~~~~~~i~--~~~G~ 135 (433)
..+++|+|+.|+| +++.|+.+.+++.++.. .....|++..|.++||+++++|+... ..+++++|. .|.|+
T Consensus 39 ~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~-----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g 113 (409)
T 4eu1_A 39 PAKRKVNLSIGVYRDDADQPFVLECVKQATL-----GTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGG 113 (409)
T ss_dssp CCSSCEECCCSSCCCTTSCCCCCHHHHTCCC-----CSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHH
T ss_pred CCcCceeeeeeEEECCCCCEeecHHHHhcCc-----cccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccc
Confidence 3457899999998 88777778888877621 45678988999999999999998521 112278884 48999
Q ss_pred HHHHHHH----HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC--------C
Q 045431 136 KCDISRL----QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST--------V 203 (433)
Q Consensus 136 ~~al~~l----~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 203 (433)
++++.++ ..++++||+|++++|+|+++...++..| .+++.++.++++++..+++. .
T Consensus 114 ~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 181 (409)
T 4eu1_A 114 TGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAG------------MELTPYSYYDPATKGLNLAGMLECLDKAP 181 (409)
T ss_dssp HHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTT------------CEEEEECCEETTTTEECHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcC------------CeEEEEEeecCcCCcCcHHHHHHHHHhCC
Confidence 9988753 3445899999999999999999999999 47888887443344334321 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC---CCcccccCCCCcceEEEeccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN---PRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
.+++++++++||||||.+++.+++++|+++|++||++||+||+|+++.+++. ..++..+.+..+++++++||||++|
T Consensus 182 ~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 261 (409)
T 4eu1_A 182 EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG 261 (409)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS
T ss_pred CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc
Confidence 2455666689999999999999999999999999999999999999887652 2334433233567899999999999
Q ss_pred ccccceeee--ec-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHHHHH
Q 045431 281 FTGVRLGWT--VI-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENTDII 352 (433)
Q Consensus 281 ~~G~r~G~l--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l 352 (433)
++|+|+||+ ++ +++++ ..+.+.+..........++.+.|.++.+++++.. .+++++++++++++++.+
T Consensus 262 ~~G~riG~~~~v~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 337 (409)
T 4eu1_A 262 LYGHRCGALHISTASAEEA----KRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRL 337 (409)
T ss_dssp CGGGCCEEEEEECSSHHHH----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCceEEEEEeCCHHHH----HHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996 44 44421 0012455554445556678999999988887542 245788999999999999
Q ss_pred HHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHH
Q 045431 353 VETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKR 427 (433)
Q Consensus 353 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~ 427 (433)
.+.|+++| +.+..+.+++|+|+.++ .++...+++++||.+.|| .||+++. +++++++++++
T Consensus 338 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~gv~v~p~----------~Ri~~~~~~~~~i~~~~~~ 403 (409)
T 4eu1_A 338 VSELKACGSVHDWSHIERQVGMMAYTGLT----REQVELLRSEYHIYMTLN----------GRAAVSGLNSTNVEYVSQA 403 (409)
T ss_dssp HHHHHHTTCCSCCHHHHHSCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHH
T ss_pred HHHHHhcCCCCCcceecCCceEEEEeCCC----HHHHHHHHHcCCEEEcCC----------CEEEEEecCHhhHHHHHHH
Confidence 99999987 77777789999997764 356777887789999885 3888754 78889999999
Q ss_pred HHHhhC
Q 045431 428 FKHLYK 433 (433)
Q Consensus 428 l~~~l~ 433 (433)
|+++++
T Consensus 404 l~~~l~ 409 (409)
T 4eu1_A 404 IHNVTK 409 (409)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998874
No 71
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=2.5e-40 Score=312.97 Aligned_cols=320 Identities=21% Similarity=0.317 Sum_probs=250.9
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
.+.+|+|+.+++++++++.+.+++.+.+.. ...| +..|..+||+++++++ ++++++|++|+|+++++.+
T Consensus 15 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~lr~~la~~~----~~~~~~i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAVEPRVQAAIAAAAAR------INRY-PFDAEPRVMRKLAEHF----SCPEDNLMLVRGIDECFDR 83 (337)
T ss_dssp CCCCEECSSCCCCSCCCHHHHHHHHHHGGG------TTSC-CTTHHHHHHHHHHHHH----TSCGGGEEEESHHHHHHHH
T ss_pred CCCceEeeCCCCCCCCCHHHHHHHHHhhhh------hccC-CCCchHHHHHHHHHHh----CcCHHHEEEeCCHHHHHHH
Confidence 346899999999999999999999987753 3567 4679999999999998 8888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCCCCCccEEEEcCCCCcccc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LSTVARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~p~nPtG~ 220 (433)
+...+ +||+|++++|+|+++...++..| .+++.++.+.+..++.+ +++..+++++++++||||||.
T Consensus 84 ~~~~~-~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~v~i~~p~nptG~ 150 (337)
T 3p1t_A 84 ISAEF-SSMRFVTAWPGFDGYRARIAVSG------------LRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQ 150 (337)
T ss_dssp HHHHS-TTSEEEEESSSCSHHHHHHTTSC------------CEEEEECBCTTSSBCHHHHTTCCTTEEEEEESSCTTTCC
T ss_pred HHHhc-CCCeEEEeCCCcHHHHHHHHHcC------------CEEEEecCCCCCCCCHHHHHhhcCCCEEEEeCCCCCCCC
Confidence 65555 99999999999999998888888 47888887654333322 334467889999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCC
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~ 300 (433)
+++.+++.+| |+++++ +|+||+|+++...+. ... ...+++++++||||++|++|+|+||++++++++
T Consensus 151 ~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~-~~~----~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~---- 217 (337)
T 3p1t_A 151 ALSAGELDQL---RQRAGK-LLIDETYVDYSSFRA-RGL----AYGENELVFRSFSKSYGLAGLRLGALFGPSELI---- 217 (337)
T ss_dssp CCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSS-SCC----CCBTTEEEEEESSSTTCCTTTCCEEEECCHHHH----
T ss_pred CCCHHHHHHH---HHhCCc-EEEECCChhhccccc-ccc----ccCCCEEEEeeCchhccCcchheEEEEeCHHHH----
Confidence 9997665555 567786 556999998765432 111 124678999999999999999999999998875
Q ss_pred cchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCC
Q 045431 301 FPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRS 380 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~ 380 (433)
+.+.+.. ...+.+.+.|.++.+++++. .++++..+++.++++.+.+.|+++|+.+.++ .+.|+|+..+.
T Consensus 218 ----~~l~~~~--~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~-- 286 (337)
T 3p1t_A 218 ----AAMKRKQ--WFCNVGTLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVASS-EANFVLVENAA-- 286 (337)
T ss_dssp ----HHHHTTS--CTTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC-SSSEEEEECTT--
T ss_pred ----HHHHhhc--CCCCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEECCC-CCeEEEEEcCC--
Confidence 5555432 33557889999888888752 3356667777888899999999988887765 56678888763
Q ss_pred hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 381 SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 381 ~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
..++.. +++++||.+.||..|+. ++++||++. ++++++++++.|+++++
T Consensus 287 ~~~~~~-~l~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 287 GERTLR-FLRERGIQVKDAGQFGL--HHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp THHHHH-HHHHTTEECEEGGGGTC--CSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-HHHHCCeEEEECccCCC--CCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 344444 45566999999998865 579999986 78899999999988753
No 72
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=100.00 E-value=1.6e-41 Score=330.22 Aligned_cols=339 Identities=16% Similarity=0.145 Sum_probs=263.2
Q ss_pred CCCceEEecCCCC-C----CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEE--
Q 045431 61 PDAEVISLGIGDT-T----EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFV-- 131 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~----~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~-- 131 (433)
.++++|+|+.|.+ + .++++.+.+++.+.+... .....|++..|..+||+++++++.+ ++.+++++|++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 104 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNS---SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQ 104 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCT---TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhCh---hhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEE
Confidence 3567899999986 2 245688888888876321 3456798889999999999999954 33347899999
Q ss_pred cCChHHHHHHH---HHhcCCC-----CEEEEeCCCChhhhhhHHHhCCcccccccccccce-EEEeecCccCCcccCCCC
Q 045431 132 SDGAKCDISRL---QIVFGSN-----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGK-IEYMRCTAENGFFPDLST 202 (433)
Q Consensus 132 ~~G~~~al~~l---~~l~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 202 (433)
|+|+++++.++ ..++.+| |+|++++|+|+++...++..| .+ ++.++.+.++++..+++.
T Consensus 105 t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAG------------FKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTT------------CSCEEEEECEETTTTEECHHH
T ss_pred CCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcC------------CceeEEEeeecCCCCccCHHH
Confidence 99999999974 3456899 999999999999999999888 46 777776432333333321
Q ss_pred --------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC---CCCcccccCCCCcceEE
Q 045431 203 --------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD---NPRSIFEIPGAKEVAIE 271 (433)
Q Consensus 203 --------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~~vi~ 271 (433)
.++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.+++ .+.++.+++...+++++
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFC 252 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEE
Confidence 1356677789999999999999999999999999999999999999988764 33345444333567899
Q ss_pred Eecccccccccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIG 343 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~ 343 (433)
++||||.+|++|+|+||+++ +++++. .+.+.+.........+++.++|.++.++|++.. .++++++++
T Consensus 253 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1ajs_A 253 AQSFSKNFGLYNERVGNLTVVAKEPDSIL----RVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMAD 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EEecccccCCCCcceEEEEEecCCHHHHH----HHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 99999999988999999999 665320 012334433334444468899999999987543 247889999
Q ss_pred HHHHHHHHHHHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-Ch
Q 045431 344 FYKENTDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HR 418 (433)
Q Consensus 344 ~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~ 418 (433)
+++++++.+.+.|++++ +.+..+.+|+|+|+.++ .+++..+++++||.+.|+ +||++.. ++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gv~v~~~----------~Ris~~~~~~ 394 (412)
T 1ajs_A 329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN----PKQVEYLINQKHIYLLPS----------GRINMCGLTT 394 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC----HHHHHHHHHTTCEECCTT----------SEEEGGGCCT
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC----HHHHHHHHHhCCEEecCC----------cEEEeeeCCH
Confidence 99999999999999886 77777788999998765 456677777789999873 6999874 89
Q ss_pred hHHHHHHHHHHHhh
Q 045431 419 GNVLEACKRFKHLY 432 (433)
Q Consensus 419 ~~l~~~l~~l~~~l 432 (433)
+++++++++|++++
T Consensus 395 ~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 395 KNLDYVATSIHEAV 408 (412)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
No 73
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=3.4e-41 Score=331.13 Aligned_cols=352 Identities=19% Similarity=0.306 Sum_probs=258.2
Q ss_pred CceE-EecCCCCCCCCh--HHHHHHHHHHHhh-------cccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEE
Q 045431 63 AEVI-SLGIGDTTEPIP--EVITSALAKRSYA-------LSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIF 130 (433)
Q Consensus 63 ~~~i-~l~~g~~~~~~~--~~~~~a~~~~~~~-------~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~ 130 (433)
+++| +|+.|.|+.+++ +.+.+++.+.+.. .........|++..|.++||+++|+|+.+ ++++++++|+
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~ 110 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIA 110 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEE
Confidence 4689 999999876322 3344444444432 10001135798899999999999999974 7778999999
Q ss_pred EcCChHHHHHH-HHHhcCCCC--------------EEEEe-CCCChhhhhhHHHhCCcccccccccccceEEEeecCccC
Q 045431 131 VSDGAKCDISR-LQIVFGSNV--------------TMAVQ-DPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN 194 (433)
Q Consensus 131 ~~~G~~~al~~-l~~l~~~gd--------------~Vl~~-~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (433)
+|+|+++++.+ +..++++|| +|++. +|+|+.+.......+. +...+ ..++.++.+.++
T Consensus 111 ~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~ 184 (444)
T 3if2_A 111 LTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQH---FAAVL---PHIDEVTHDGEE 184 (444)
T ss_dssp EESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCC---EEECC---CEEEEEEETTEE
T ss_pred EecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccch---hhccC---ceEEeccccccc
Confidence 99999999997 577788888 78775 9999998764321110 00011 356666665421
Q ss_pred C---cccC---CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccC
Q 045431 195 G---FFPD---LST-----VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 195 ~---~~~~---~~~-----~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
+ +..+ +++ .+++++|++++||||||.+++.+++++|+++|++||++||+||+|+.+.......+.. .
T Consensus 185 g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~--~ 262 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH--L 262 (444)
T ss_dssp EEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC--C
T ss_pred CccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccc--c
Confidence 1 1222 222 3578999999999999999999999999999999999999999998532211111111 1
Q ss_pred CCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHH-H
Q 045431 264 GAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHE-V 341 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~-~ 341 (433)
...+++++++||||+ +++|+|+||++++++++ +.+.........+++.+.|.++..++..... .+..+ +
T Consensus 263 ~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 333 (444)
T 3if2_A 263 NWDNNTILCFSLSKI-GLPGMRTGIIVADAKVI--------EAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEI 333 (444)
T ss_dssp CCCTTEEEEEESTTT-TCGGGCCEEEECCHHHH--------HHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTH
T ss_pred cCCCCEEEEechhhc-cCCCCceEEEEECHHHH--------HHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHHH
Confidence 225688999999997 57999999999998885 6666666655666788999998888875443 34444 7
Q ss_pred HHHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCC--------C
Q 045431 342 IGFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGG--------E 407 (433)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~--------~ 407 (433)
++.++++++.+.+.|.+. ++.+..+.+|+++|+.++. .+..++...+ .++||.+.||..|.... +
T Consensus 334 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~ 412 (444)
T 3if2_A 334 KPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERL-KAKGTLIVPSEYFFPGVDVSDYQHAH 412 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHH-HHTTEECEEGGGSCTTCCCTTCSGGG
T ss_pred HHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHH-HHCCeEEecchhhcCCCCCcccccCC
Confidence 778899999988888763 5677777889999999984 4666777666 45699999999985431 3
Q ss_pred CeEEEeeccChhHHHHHHHHHHHhh
Q 045431 408 GFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 408 ~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+++||++..+++++++++++|++++
T Consensus 413 ~~iRis~~~~~e~i~~~l~~l~~~~ 437 (444)
T 3if2_A 413 ECIRMSIAADEQTLIDGIKVIGEVV 437 (444)
T ss_dssp SEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899998779999999999999875
No 74
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=100.00 E-value=3.4e-41 Score=331.03 Aligned_cols=340 Identities=15% Similarity=0.156 Sum_probs=257.8
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcc--cCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-----CCcEEE--
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALS--TQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-----EGDIFV-- 131 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~--~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-----~~~i~~-- 131 (433)
.+..|+|+.|.| ++..++.+.+++.+++.+.. .......|.+..|.+++|+++++++. +.+ +++|++
T Consensus 48 ~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~~ 124 (448)
T 3meb_A 48 NPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASCQ 124 (448)
T ss_dssp CTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEEE
T ss_pred CCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEEE
Confidence 345799999998 66555444445554422221 11445689888999999999999984 333 789999
Q ss_pred cCChHHHHHH---HHHhcCCCCEEEEeCCCChhhhhhHH----HhCCcccccccccccceEEEeecCccC-CcccCCCC-
Q 045431 132 SDGAKCDISR---LQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPDLST- 202 (433)
Q Consensus 132 ~~G~~~al~~---l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 202 (433)
|+|+++++.+ +..++.+||+|++++|+|+++...++ ..| .+++.++..+++ ++..+++.
T Consensus 125 t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G------------~~v~~~~~~~~~~~~~~d~e~l 192 (448)
T 3meb_A 125 SLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLK------------VPYKEYTYLRKDGELEIDFSNT 192 (448)
T ss_dssp ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTT------------SCCEEECCBCTTSCSSBCHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCC------------CeEEEEeccccccCCCcCHHHH
Confidence 9999999976 25667999999999999999999998 788 477788873332 33344322
Q ss_pred ------C-CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC---CCcccccCCCCcceEEE
Q 045431 203 ------V-ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN---PRSIFEIPGAKEVAIET 272 (433)
Q Consensus 203 ------~-~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~vi~i 272 (433)
. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+....++++++
T Consensus 193 ~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (448)
T 3meb_A 193 KKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVA 272 (448)
T ss_dssp HHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEE
Confidence 1 3466777789999999999999999999999999999999999999887641 22333332234678999
Q ss_pred ecccccccccccceeee--ec--------cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hH
Q 045431 273 SSFSKYAGFTGVRLGWT--VI--------PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KA 337 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~ 337 (433)
+||||.+|++|+|+||+ ++ ++... ...+.+.+.......+..++.+.|.++.+++.+... ++
T Consensus 273 ~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~ 349 (448)
T 3meb_A 273 QSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKAL---SAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDN 349 (448)
T ss_dssp EECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHH---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred ecccccCCCccccceeeeeeeccccccccCCHHH---HHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999998 66 43210 001135555555556667889999999999886431 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC---------CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCC
Q 045431 338 VHEVIGFYKENTDIIVETFNSLG---------FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEG 408 (433)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~g---------~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~ 408 (433)
+++++++++++++.+.+.|+++| +.+..+.+|+|+|+.++ .++...+++++||.+.||+
T Consensus 350 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gV~v~~G~-------- 417 (448)
T 3meb_A 350 VKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT----PEHVDYLKEKWSIYLVKAG-------- 417 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC----HHHHHHHHHHHCEEECSGG--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC----HHHHHHHHHhCCEEEeCCC--------
Confidence 78899999999999999999873 55556789999998875 4677777778899999875
Q ss_pred eEEEeecc-ChhHHHHHHHHHHHhh
Q 045431 409 FIRVSAFG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 409 ~iRi~~~~-~~~~l~~~l~~l~~~l 432 (433)
.|||++. +++++++++++|++++
T Consensus 418 -gRis~a~~~~~~i~~~~~~l~~~l 441 (448)
T 3meb_A 418 -GRMSMCGLTESNCDYVAEAIHDAV 441 (448)
T ss_dssp -GEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred -cEEEEecCCHHHHHHHHHHHHHHH
Confidence 2999876 8888999999999875
No 75
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=100.00 E-value=1.3e-41 Score=328.97 Aligned_cols=336 Identities=17% Similarity=0.196 Sum_probs=255.2
Q ss_pred CceEEecCCCC---CC--CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhcc--CCCCCCcEEE--cC
Q 045431 63 AEVISLGIGDT---TE--PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKD--LGIEEGDIFV--SD 133 (433)
Q Consensus 63 ~~~i~l~~g~~---~~--~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~--~~~~~~~i~~--~~ 133 (433)
+++|+|+.|.+ +. ++++.+.+++.+.+.. .....|++..|..+||+++++++.+. ..+++++|++ |+
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~ 101 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN----ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTP 101 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCc----ccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecc
Confidence 46899999983 22 4668999999887754 23457988899999999999998642 1246889998 99
Q ss_pred ChHHHHHHH-HHh--cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-------C
Q 045431 134 GAKCDISRL-QIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------V 203 (433)
Q Consensus 134 G~~~al~~l-~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 203 (433)
|+++++.++ ..+ +.+||+|++++|+|+++...++..| .+++.++.+.++++..+++. .
T Consensus 102 g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 169 (396)
T 2q7w_A 102 GGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAG------------LEVREYAYYDAENHTLDFDALINSLNEA 169 (396)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcC------------CceEEEecccCCCCCcCHHHHHHHHHhC
Confidence 999999974 333 4799999999999999999999888 47777877432222233221 1
Q ss_pred -CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCcccccCCCCcceEEEeccccccc
Q 045431 204 -ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 204 -~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++ ...++..++...+++++++||||.+|
T Consensus 170 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 249 (396)
T 2q7w_A 170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG 249 (396)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc
Confidence 246677778999999999999999999999999999999999999987753 23344434322467899999999999
Q ss_pred ccccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC----C-hhHHHHHHHHHHHHHHHH
Q 045431 281 FTGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE----G-FKAVHEVIGFYKENTDII 352 (433)
Q Consensus 281 ~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~-~~~~~~~~~~~~~~~~~l 352 (433)
++|+|+||+++ +++.+ ..+.+.+.......+.+++.++|.++.+++++. . .+++++++++++++++.+
T Consensus 250 ~~G~riG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 325 (396)
T 2q7w_A 250 LYNERVGACTLVAADSETV----DRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLF 325 (396)
T ss_dssp CGGGCCEEEEEECSSHHHH----HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHH
T ss_pred ccccccceEEEEcCCHHHH----HHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 34321 001233443333444556899999999998854 1 257788899999999999
Q ss_pred HHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHH
Q 045431 353 VETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKR 427 (433)
Q Consensus 353 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~ 427 (433)
.+.|++++ +.+..+.+|+|+|+.++ . +.+..+++++||.+.|| +||++.. +++++++++++
T Consensus 326 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gv~v~~~----------~Ris~~~~~~e~i~~~~~~ 391 (396)
T 2q7w_A 326 VNTLQEKGANRDFSFIIKQNGMFSFSGLT---K-EQVLRLREEFGVYAVAS----------GRVNVAGMTPDNMAPLCEA 391 (396)
T ss_dssp HHHHHHTTCCSCCTHHHHCCSSEEECCCC---H-HHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHH
T ss_pred HHHHHhcCCCCCcceecCCCceEEEecCC---H-HHHHHHHHhcCeeecCC----------ceEEEeecCHHHHHHHHHH
Confidence 99999986 77777788999998775 2 45666676779999873 6999865 89999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|++++
T Consensus 392 l~~~l 396 (396)
T 2q7w_A 392 IVAVL 396 (396)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98864
No 76
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=100.00 E-value=2.2e-40 Score=313.14 Aligned_cols=316 Identities=18% Similarity=0.282 Sum_probs=249.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQ 143 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~ 143 (433)
++|+|+.|.++++.|+.+.+++.+.+.+ .....|+. .+..++|+++++++.+. .+++++|++|+|+++++.++.
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~-~~~~~lr~~la~~~~~~-~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNS----DALRIYYD-SPDEELIEKILSYLDTD-FLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCG----GGGGSCCC-SSCHHHHHHHHHHHTCS-SCCGGGEEEESSHHHHHHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhh----hhhhcCCC-CchHHHHHHHHHHcCCC-CCCHHHEEEcCChHHHHHHHH
Confidence 5799999999888899999999987742 23456744 47999999999998322 278899999999999999865
Q ss_pred HhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCC
Q 045431 144 IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 144 ~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~ 223 (433)
..+ ||+|+++ |+|+++...++..| .+++.++.+.+ +..+++..+++++|++++||||||.+++
T Consensus 94 ~~~--gd~Vl~~-p~y~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~~~v~l~~p~nptG~~~~ 156 (335)
T 1uu1_A 94 LMF--DRSVFFP-PTYSCYRIFAKAVG------------AKFLEVPLTKD--LRIPEVNVGEGDVVFIPNPNNPTGHVFE 156 (335)
T ss_dssp HHS--SEEEECS-SSCHHHHHHHHHHT------------CEEEECCCCTT--SCCCCCCCCTTEEEEEESSCTTTCCCCC
T ss_pred HHh--CCcEEEC-CCcHHHHHHHHHcC------------CeEEEeccCCC--CCCCHHHcCCCCEEEEeCCCCCCCCCCC
Confidence 555 9999999 99999999988888 47778887543 2333333367899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
.+++++|+++| | ++|+||+|+++... ...++ ++ ..+++++++||||.+|++|+|+||++++++++
T Consensus 157 ~~~l~~l~~~~---~-~li~De~~~~~~~~-~~~~~--~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~------- 221 (335)
T 1uu1_A 157 REEIERILKTG---A-FVALDEAYYEFHGE-SYVDF--LK-KYENLAVIRTFSKAFSLAAQRVGYVVASEKFI------- 221 (335)
T ss_dssp HHHHHHHHHTT---C-EEEEECTTHHHHCC-CCGGG--GG-TCSSEEEEEESTTTTTCGGGCCEEEEECHHHH-------
T ss_pred HHHHHHHHHhC---C-EEEEECcchhhcch-hHHHH--hh-hCCCEEEEecchhhcCCcccCeEEEEeCHHHH-------
Confidence 99888888877 7 89999999986542 11221 22 24578999999999999999999999988774
Q ss_pred hHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHH
Q 045431 304 AKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWD 383 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~ 383 (433)
+.+.... ...+.+.++|.++.+++++ .+++++.+++++++++.+.+.|+++|+.+. +.+++|+|++++..+..+
T Consensus 222 -~~l~~~~--~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~ 295 (335)
T 1uu1_A 222 -DAYNRVR--LPFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRIT-DSRGNFVFVFMEKEEKER 295 (335)
T ss_dssp -HHHHHHS--CTTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CCCSSEEEEECCTHHHHH
T ss_pred -HHHHHhc--CCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEc-CCCCeEEEEECCCCCHHH
Confidence 5555433 2346889999999999875 356788999999999999999998887765 457889999997533455
Q ss_pred HHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 384 VFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 384 ~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+...+.+ +||.+.| .++++||++. +.+++++++++|++++
T Consensus 296 ~~~~l~~-~gi~v~~-------~~~~iRis~~-~~~~i~~~~~~l~~~~ 335 (335)
T 1uu1_A 296 LLEHLRT-KNVAVRS-------FREGVRITIG-KREENDMILRELEVFK 335 (335)
T ss_dssp HHHHHHH-HTEEEEE-------ETTEEEEECC-CHHHHHHHHHHHHCC-
T ss_pred HHHHHHH-CCEEEEE-------CCCeEEEEeC-CHHHHHHHHHHHHhhC
Confidence 6666665 5999988 2468999985 4678999999998753
No 77
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=100.00 E-value=1.8e-41 Score=330.35 Aligned_cols=327 Identities=16% Similarity=0.173 Sum_probs=255.1
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCC-C---CHHHHHHHHHHHhc--cCCCCCCcEEEcCChH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQ-G---EKPLRAAIASTFYK--DLGIEEGDIFVSDGAK 136 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~-g---~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~ 136 (433)
+.+|+|+.|+|++++|+.+.+++.+++.... .....|++.. | .++||+++|+|+.+ +..+++++|++|+|++
T Consensus 56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~--~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~ 133 (427)
T 2hox_A 56 GCSADVASGDGLFLEEYWKQHKEASAVLVSP--WHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVT 133 (427)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEECT--TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHH
T ss_pred CceEEecCcCCCCCCCHHHHHhHHhhhhcCC--cccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHH
Confidence 3689999999988777888888887663211 2223588877 8 99999999999975 3446889999999999
Q ss_pred HHHHH-HHHh--------cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCcc
Q 045431 137 CDISR-LQIV--------FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTD 207 (433)
Q Consensus 137 ~al~~-l~~l--------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (433)
+++.+ +..+ +++||.|++++|+|+.+...++..|.. ++....+.+ .+...+ .++++
T Consensus 134 ~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~------------~~~~~~d~~-~l~~~~--~~~~k 198 (427)
T 2hox_A 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKK------------GYVWAGNAA-NYVNVS--NPEQY 198 (427)
T ss_dssp HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBT------------TEEEEEEGG-GGTTCS--CGGGE
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCe------------eeeecCCHH-HHHHhh--cCCce
Confidence 99997 5778 899999999999999999999998853 333333222 221112 24689
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+|+++|||||||.+++ +.+ + ++.+|.|+.|.+ ...++..++ .+++|+++||||.+|++|+|+|
T Consensus 199 ~v~l~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~~~-----~~~s~~~~~--~~~~i~~~S~SK~~g~~G~RiG 261 (427)
T 2hox_A 199 IEMVTSPNNPEGLLRH-AVI-------K--GCKSIYDMVYYW-----PHYTPIKYK--ADEDILLFTMSKFTGHSGSRFG 261 (427)
T ss_dssp EEEEESSCTTTCCCCC-CSS-------T--TCEEEEECTTCS-----TTTSCCCSC--BCCSEEEEEHHHHTSCGGGCCE
T ss_pred EEEEcCCCCCcccccH-HHH-------c--CCCEEEeecccC-----CCCCccccC--CCceEEEEeChhcCCCCCceEE
Confidence 9999999999999999 422 2 566788877652 233444443 5688999999999999999999
Q ss_pred eeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcC----------ChhHHHHHHHHHHHHHHHHHHHH
Q 045431 288 WTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPE----------GFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 288 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|++++ ++++ +.+.+.......+++.++|.++..+|++. ..+++++.++.++++++.+.+.|
T Consensus 262 ~~~~~~~~l~--------~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (427)
T 2hox_A 262 WALIKDESVY--------NNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALL 333 (427)
T ss_dssp EEEECCHHHH--------HHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHH--------HHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 6664 67777666666678999999988888752 12567888999999999999999
Q ss_pred hhc-CCee--------------ecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHH
Q 045431 357 NSL-GFKV--------------YGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNV 421 (433)
Q Consensus 357 ~~~-g~~~--------------~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l 421 (433)
+++ |+.+ ..|.+|+|+|++++. +..++...+++++||.++||..|+. +++++|||+..+++++
T Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ris~~~~~e~l 411 (427)
T 2hox_A 334 DQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIKTQDDF 411 (427)
T ss_dssp TTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSSCHHHH
T ss_pred HhCcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCCccCC-CCCEEEEEecCCHHHH
Confidence 987 6554 245679999999975 3455677777777999999999976 6789999998899999
Q ss_pred HHHHHHHHHhhC
Q 045431 422 LEACKRFKHLYK 433 (433)
Q Consensus 422 ~~~l~~l~~~l~ 433 (433)
++++++|+++++
T Consensus 412 ~~~l~~l~~~~~ 423 (427)
T 2hox_A 412 DQLMYYLKDMVK 423 (427)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 78
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=100.00 E-value=2e-41 Score=329.56 Aligned_cols=337 Identities=17% Similarity=0.180 Sum_probs=257.3
Q ss_pred CCCceEEecCCCC-CC----CChHHHHHHHHH-HHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEE-
Q 045431 61 PDAEVISLGIGDT-TE----PIPEVITSALAK-RSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFV- 131 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~----~~~~~~~~a~~~-~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~- 131 (433)
.++++|+|+.|.+ +. ++++.+.+++.+ .+.. .....|++..|.++||+++++++.+ ++.+++++|++
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~ 102 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS----SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISV 102 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc----ccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEE
Confidence 3457899999986 32 467889999888 7652 3345788889999999999999964 33356899999
Q ss_pred -cCChHHHHHHH---HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeec-CccCCcccCCCC----
Q 045431 132 -SDGAKCDISRL---QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRC-TAENGFFPDLST---- 202 (433)
Q Consensus 132 -~~G~~~al~~l---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---- 202 (433)
|+|+++++.++ ...+.+||+|++++|+|+++...++..| .+++.++. +.+ ++..+++.
T Consensus 103 ~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~-~~~~d~~~l~~~ 169 (412)
T 1yaa_A 103 QSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQG------------LKTATYPYWANE-TKSLDLNGFLNA 169 (412)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTT------------CCEEEEECEETT-TTEECHHHHHHH
T ss_pred eccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcC------------ceEEEEeeecCC-CCccCHHHHHHH
Confidence 99999999864 4556899999999999999999988888 46777776 321 22233221
Q ss_pred ---CCCccEEEE-cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC---CCCcccccCCCCc---ceEEE
Q 045431 203 ---VARTDIIFF-CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD---NPRSIFEIPGAKE---VAIET 272 (433)
Q Consensus 203 ---~~~~~~i~l-~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~---~vi~i 272 (433)
.+..+++++ ++||||||.+++.+++++|+++|++||++||+||+|.++.+++ .+.++..+....+ +++++
T Consensus 170 l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 249 (412)
T 1yaa_A 170 IQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVC 249 (412)
T ss_dssp HHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEE
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEE
Confidence 112344555 8999999999999999999999999999999999999887764 2333433322223 78999
Q ss_pred ecccccccccccceeeee--c-----cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHH
Q 045431 273 SSFSKYAGFTGVRLGWTV--I-----PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHE 340 (433)
Q Consensus 273 ~S~sK~~~~~G~r~G~l~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~ 340 (433)
+||||.+|++|+|+||++ + +++.+ .++.+.+.......+.+++.+.|.++.+++++.. .+++++
T Consensus 250 ~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 325 (412)
T 1yaa_A 250 QSFAKNAGMYGERVGCFHLALTKQAQNKTIK----PAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVT 325 (412)
T ss_dssp EECTTTSCCGGGCEEEEEEECCSCTTHHHHH----HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred eccCCCCCCcCCcceEEEEEecCCCCCHHHH----HHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999997799999998 7 44410 0012555554444455568899999999987543 247899
Q ss_pred HHHHHHHHHHHHHHHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc
Q 045431 341 VIGFYKENTDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG 416 (433)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~ 416 (433)
++++++++++.+.+.|++++ +.+..+.+|+++|+.++ .. .+..+++++||.+.| ++||++..
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~l~~~gi~v~~----------~~Ris~~~ 391 (412)
T 1yaa_A 326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT---PQ-MVKRLEETHAVYLVA----------SGRASIAG 391 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC---HH-HHHHHHHHHCEECCT----------TSEEEGGG
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC---HH-HHHHHHHhCCEEecc----------CcEEEEcc
Confidence 99999999999999999876 77777788999998764 33 346777677999976 48999865
Q ss_pred -ChhHHHHHHHHHHHhh
Q 045431 417 -HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 -~~~~l~~~l~~l~~~l 432 (433)
+++++++++++|++++
T Consensus 392 ~~~~~i~~~~~~l~~~~ 408 (412)
T 1yaa_A 392 LNQGNVEYVAKAIDEVV 408 (412)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHH
Confidence 8999999999998875
No 79
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=6.6e-40 Score=314.11 Aligned_cols=327 Identities=18% Similarity=0.213 Sum_probs=257.4
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc--cCCCCCCcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK--DLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~--~~~~~~~~i~~~~G~~~al~~- 141 (433)
.|||+.|++++++++.+.+++.+.+.+.. .....|++..+ .++|+++++++.+ ++++++++|++|+|+++++.+
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~ 108 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIA--TELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQL 108 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHG--GGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcc--cccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHH
Confidence 39999999988899999999999887532 23457866555 7999999999875 567788999999999999987
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNP 217 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nP 217 (433)
+..++++||+|++++|+|+++...++..| .+++.++.+.+...+.+ +++ .+ ++++|++++||||
T Consensus 109 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 176 (369)
T 3cq5_A 109 LQAFGGPGRTALGFQPSYSMHPILAKGTH------------TEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNP 176 (369)
T ss_dssp HHHHCSTTCEEEEEESSCTHHHHHHHHTT------------CEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred HHHhcCCCCEEEEcCCChHHHHHHHHHcC------------CEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCC
Confidence 67778999999999999999999888888 47778886543222211 221 13 7899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCc-ceEEEecccccccccccceeeeecccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE-VAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
||.+++.+++++|++ .+++++|+||+|+++.++ .+...+....+ ++++++||||++|++|+|+||++++++++
T Consensus 177 tG~~~~~~~l~~l~~---~~~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 250 (369)
T 3cq5_A 177 TGDVTSLDDVERIIN---VAPGIVIVDEAYAEFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFI 250 (369)
T ss_dssp TCCCCCHHHHHHHHH---HCSSEEEEECTTGGGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHH
T ss_pred CCCCCCHHHHHHHHH---hCCCEEEEECCchhhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHH
Confidence 999999766666655 556999999999987653 22233212234 78999999999998999999999998774
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEEC
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQF 376 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~ 376 (433)
+.+..... ..+.+.+.|.++.+++++ .+++++.+++++++++.+.+.|++.|+.+.+ ..|+|+|+++
T Consensus 251 --------~~l~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~ 317 (369)
T 3cq5_A 251 --------DAVMLVRL--PYHLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELGYAVVP-SESNFVFFGD 317 (369)
T ss_dssp --------HHHHTTSC--TTCSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHTCEEEC-CSSSEEEEEC
T ss_pred --------HHHHHcCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEECC-CCCeEEEEEC
Confidence 55543322 345789999998888874 3567889999999999999999988888874 5778999998
Q ss_pred CCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHHHHHHHHHHhhC
Q 045431 377 PGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 377 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~~~l~~l~~~l~ 433 (433)
+ .+..++...+. ++||.+.||. .++++||++. +++++++++++|+++++
T Consensus 318 ~-~~~~~l~~~l~-~~gi~v~~~~-----~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 318 F-SDQHAAWQAFL-DRGVLIRDVG-----IAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp C-SSHHHHHHHHH-HTTEECBCCS-----CTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred C-CCHHHHHHHHH-HCCEEEEECC-----CCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 7 45666776664 5699999981 2578999987 78999999999998763
No 80
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=100.00 E-value=7.5e-40 Score=315.46 Aligned_cols=339 Identities=13% Similarity=0.104 Sum_probs=245.1
Q ss_pred ceEEecCCCC---C--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhc-cCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDT---T--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYK-DLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~---~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~-~~~~~~~~i~~~~G~~~ 137 (433)
+.|||++|.+ + .+..+.|.+|....+.. .....|.|..|.++||+++++++.+ .........+.|.|++.
T Consensus 45 ~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~----~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtg 120 (420)
T 4h51_A 45 PKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM----NLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTG 120 (420)
T ss_dssp SCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHH
T ss_pred CCEEeecCcccCCCCCCCCCHHHHHHHHHHhcC----CCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchH
Confidence 4799999954 1 23457788877666643 3335799999999999999999864 22112223345788887
Q ss_pred HHHH-H----HHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCC-------C-CCC
Q 045431 138 DISR-L----QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDL-------S-TVA 204 (433)
Q Consensus 138 al~~-l----~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~ 204 (433)
++.. + ..++.|||+|++++|+|++|..+++.+|... +...+..++..+..+. + ..+
T Consensus 121 a~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~-----------V~~~~~~~~~~~~~d~~~~~~~l~~~~~ 189 (420)
T 4h51_A 121 AVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKN-----------ICTYAYYDPKTVSLNFEGMKKDILAAPD 189 (420)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCC-----------EEEEECEEGGGTEECHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeE-----------EEeeccccccccCCCHHHHHHHHhccCC
Confidence 7654 2 2335799999999999999999999999532 3233332222222221 1 135
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC---CCcccccCCCCcceEEEecccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN---PRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
+++++++++||||||.+++.+++++|+++|+++++++|+|++|.+|.+++. ...+.......++++++.||||.+++
T Consensus 190 ~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 269 (420)
T 4h51_A 190 GSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGL 269 (420)
T ss_dssp SCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCC
T ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccccc
Confidence 677777789999999999999999999999999999999999999988753 11222222234678999999999999
Q ss_pred cccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-----hHHHHHHHHHHHHHHHHHHHH
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-----KAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~l 356 (433)
+|+|+||++++...... ..++...+..........++...|.++...+.+... .+++.++++++++|+.+.+.|
T Consensus 270 ~G~RvG~~~~~~~~~~~-~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L 348 (420)
T 4h51_A 270 YSERAGTLSLLLKDKTK-RADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDEL 348 (420)
T ss_dssp GGGCEEEEEEECSCHHH-HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEecccCHHH-HHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988776411 011112233334455666888889888888875432 457888999999999999999
Q ss_pred hhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHHHHh
Q 045431 357 NSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRFKHL 431 (433)
Q Consensus 357 ~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l~~~ 431 (433)
+++| |.++.+++|+|.|+.++ .+.++ +++++||.+.||. |||++. +++.++.+.++|.++
T Consensus 349 ~~~g~~~~~~~i~~q~GmF~~~gls----~e~v~-~L~e~~Vy~~~~g----------Ris~Agl~~~ni~~~a~aI~~v 413 (420)
T 4h51_A 349 LRLQTPGSWEHVINQIGMFSFLGLS----KAQCE-YCQNHNIFITVSG----------RANMAGLTHETALMLAQTINDA 413 (420)
T ss_dssp HHTTCSSCCTHHHHCCSSEEECCCC----HHHHH-HHHHTTEECCTTC----------EEEGGGCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCeecCCCceEEecCcC----HHHHH-HHHhCCEEEcCCC----------EEEeccCCHHHHHHHHHHHHHH
Confidence 9875 44456679999997764 23444 4567899998752 999865 999999999999988
Q ss_pred hC
Q 045431 432 YK 433 (433)
Q Consensus 432 l~ 433 (433)
++
T Consensus 414 vr 415 (420)
T 4h51_A 414 VR 415 (420)
T ss_dssp HC
T ss_pred HH
Confidence 74
No 81
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=100.00 E-value=3.3e-40 Score=319.04 Aligned_cols=336 Identities=15% Similarity=0.156 Sum_probs=253.8
Q ss_pred CCceEEecCCCC---C--CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE--cCC
Q 045431 62 DAEVISLGIGDT---T--EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV--SDG 134 (433)
Q Consensus 62 ~~~~i~l~~g~~---~--~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~--~~G 134 (433)
++++|+|+.|.+ + .++++.+.+++.+.+.. .....|++..|..+||+++++++.. .++++++|++ |+|
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~-~~~~~~~v~~~~~~g 99 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET----ETTKTYAGLSGEPEFQKAMGELILG-DGLKSETTATLATVG 99 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCSSCCHHHHHHHHHHHHG-GGCCGGGEEEEEEEH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCC----cccCCCCCCCCcHHHHHHHHHHHhC-CCCCcccEEEEecCC
Confidence 456899999985 2 25678999999887754 2456898888999999999999843 1237889999 999
Q ss_pred hHHHHHHH-HHh--cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-------C-
Q 045431 135 AKCDISRL-QIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-------V- 203 (433)
Q Consensus 135 ~~~al~~l-~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~- 203 (433)
+++++.++ ..+ +.+||+|++++|+|+++...++..| .+++.++.+.++++..+++. .
T Consensus 100 ~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 167 (394)
T 2ay1_A 100 GTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMG------------LPVQTYRYFDAETRGVDFEGMKADLAAAK 167 (394)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHT------------CCEEEEECEETTTTEECHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcC------------CceEEEecccccCCccCHHHHHHHHHhCC
Confidence 99999974 444 3499999999999999999999888 46777777432222223221 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCcccccCCCCcceEEEecccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD--NPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
++++++++++||||||.++|.+++++|+++|++||+++|+||+|+++.+++ ...++..+....+++++++||||.+|+
T Consensus 168 ~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 247 (394)
T 2ay1_A 168 KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGI 247 (394)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTC
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcC
Confidence 235666668999999999999999999999999999999999999887653 122333332223568999999999999
Q ss_pred cccceeeeec---cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCC-----hhHHHHHHHHHHHHHHHHH
Q 045431 282 TGVRLGWTVI---PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEG-----FKAVHEVIGFYKENTDIIV 353 (433)
Q Consensus 282 ~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~ 353 (433)
+|+|+||+++ +++++. .+...+.......+.+++.++|.++.+++++.. .+++++++++++++++.+.
T Consensus 248 ~G~riG~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 323 (394)
T 2ay1_A 248 YRERTGCLLALCADAATRE----LAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp GGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccceEEEEeCCHHHHH----HHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 454320 011223322333444568899998888887541 2468899999999999999
Q ss_pred HHHhhcC----CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-ChhHHHHHHHHH
Q 045431 354 ETFNSLG----FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-HRGNVLEACKRF 428 (433)
Q Consensus 354 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~l~~~l~~l 428 (433)
+.|++++ +.+..+.+|+|+|++++ . +.+..+++++||.+.|| +||++.. +++++++++++|
T Consensus 324 ~~L~~~~~~~~~~~~~~~~g~~~~~~~~---~-~~~~~~l~~~gi~v~~~----------~Ris~~~~~~~~i~~~~~~l 389 (394)
T 2ay1_A 324 GELRDLSGSDRFGFVAEHRGMFSRLGAT---P-EQVKRIKEEFGIYMVGD----------SRINIAGLNDNTIPILARAI 389 (394)
T ss_dssp HHHHHHHTSSTTTHHHHCCSSEEECCCC---H-HHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHHH
T ss_pred HHHHhcCCCCCeeEEcCCceEEEeeCCC---H-HHHHHHHHhCCEEecCC----------CeEEeecCCHhhHHHHHHHH
Confidence 9998874 77777778999998875 2 34566666779999874 6999854 899999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
+++.
T Consensus 390 ~~~~ 393 (394)
T 2ay1_A 390 IEVG 393 (394)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 8763
No 82
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=2e-38 Score=306.97 Aligned_cols=337 Identities=15% Similarity=0.149 Sum_probs=255.2
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+..+|+|+.|.+ ++++++.+.+++.+.+.... .....|....|..++++++++++.+.++. +++++|+|+++++.
T Consensus 42 g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~v~~~~ggt~a~~ 117 (398)
T 3a2b_A 42 GRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYG--TGCAGSRFLNGTLDIHVELEEKLSAYVGK--EAAILFSTGFQSNL 117 (398)
T ss_dssp TEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHC--SCCCSBTTTTCCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHH
T ss_pred CceEEEeecccccCCCCCHHHHHHHHHHHHHcC--CCCCCcCcccCCcHHHHHHHHHHHHHhCC--CcEEEECCHHHHHH
Confidence 456899999988 66688999999999887543 33456666778889999999998764454 58999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC--CCccEEEEcCCCCc
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV--ARTDIIFFCSPNNP 217 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~p~nP 217 (433)
+ +..++++||.|++++|+|+.+...++..| .+++.++..+...+...+... .++++|++++|+||
T Consensus 118 ~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~np 185 (398)
T 3a2b_A 118 GPLSCLMGRNDYILLDERDHASIIDGSRLSF------------SKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSM 185 (398)
T ss_dssp HHHHHSSCTTCEEEEETTCCHHHHHHHHHSS------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTT
T ss_pred HHHHHHhCCCCEEEECCccCHHHHHHHHHcC------------CceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCC
Confidence 7 57778999999999999999999998888 467777752211111111111 16889999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcc-eEEEecccccccccccceeeeecccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEV-AIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
||.+++ +++|.++|++||++||+||+|+.+.++..+.++.+..+..++ +++++||||+++++| ||++++++++
T Consensus 186 tG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~ 259 (398)
T 3a2b_A 186 EGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVI 259 (398)
T ss_dssp TCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHH
T ss_pred CCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHHH
Confidence 999998 899999999999999999999987664322333332222345 599999999999768 9999998775
Q ss_pred ccCCcchhHHHHHH-HhhccCCCcHHHHH-HHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEE
Q 045431 297 FSDGFPVAKDFNRI-VCTCFNGASNISQA-GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWV 374 (433)
Q Consensus 297 ~~~~~~~~~~~~~~-~~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~ 374 (433)
+.+... ......+.+.+.|. ++.++++. .+++++++++++++++.+.+.|+++|+.+..+ .|+++|+
T Consensus 260 --------~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~g~~~~~ 328 (398)
T 3a2b_A 260 --------DFLKHNARSVMFSASMTPASVASTLKALEI--IQNEPEHIEKLWKNTDYAKAQLLDHGFDLGAT-ESPILPI 328 (398)
T ss_dssp --------HHHHHHCHHHHSSBCCCHHHHHHHHHHHHH--HHHCTHHHHHHHHHHHHHHHHHHHTTCCBCSC-CSSEEEE
T ss_pred --------HHHHHhcccceecCCCCHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHhcCCCcCCC-CCCEEEE
Confidence 555543 22233334555665 45566653 24457888999999999999999988887765 5799999
Q ss_pred ECCC-CChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 375 QFPG-RSSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 375 ~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
.++. .+..++...++++ ||.+.||..|.. .+++++||++.. +++++++++++|++++
T Consensus 329 ~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l 389 (398)
T 3a2b_A 329 FIRSNEKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVF 389 (398)
T ss_dssp ECCCHHHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9973 3455677777666 999999988753 246799999864 8999999999999875
No 83
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1e-35 Score=287.86 Aligned_cols=338 Identities=17% Similarity=0.151 Sum_probs=245.3
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCC--CCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSG--YGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~--Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++..+|||+.+.| +++.++.+.+++.+.+.+......... |+...+..++++.+++++ +.+ ++|++++|+ +
T Consensus 41 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~~~-~~i~~~sGt-~ 114 (399)
T 3tqx_A 41 GEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL----GTD-DTILYSSCF-D 114 (399)
T ss_dssp TTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH----TCS-EEEEESCHH-H
T ss_pred CCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH----CCC-cEEEECchH-H
Confidence 3456899999976 335689999999998876542112222 333445789999999987 554 677787774 5
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC----CCccEEEEc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV----ARTDIIFFC 212 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~ 212 (433)
++.+ +..++++||.|++++|+|+.+...++..| .+++.++..+...+...+... .++++|+++
T Consensus 115 a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~ 182 (399)
T 3tqx_A 115 ANGGLFETLLGPEDAIISDELNHASIIDGIRLCK------------AQRYRYKNNAMGDLEAKLKEADEKGARFKLIATD 182 (399)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCC------------SEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcC------------CceeEeCCCCHHHHHHHHHhhhccCCCceEEEEe
Confidence 7665 67889999999999999999999888888 467777753221111111111 278999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC-CCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG-AKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
+|+||||.+++ +++|+++|++||+++|+||+|+...+.....++.+..+ ..+.+++++||||+++ |++.||+++
T Consensus 183 ~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~ 257 (399)
T 3tqx_A 183 GVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSG 257 (399)
T ss_dssp SEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEE
T ss_pred CCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEc
Confidence 99999999999 88999999999999999999974333322223333222 1345699999999997 455599999
Q ss_pred cccccccCCcchhHHHHHHHh--hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCc
Q 045431 292 PKELLFSDGFPVAKDFNRIVC--TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNA 369 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 369 (433)
+++++ +.+..... ......+.+.+.++.+.++... +++++.+++++++++.+.+.|+++|+.+.+ ..+
T Consensus 258 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~ 327 (399)
T 3tqx_A 258 HKEII--------EWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVP-GNH 327 (399)
T ss_dssp CHHHH--------HHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CSS
T ss_pred CHHHH--------HHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCC-CCC
Confidence 98875 55544321 1233467777777777766321 457899999999999999999999988874 477
Q ss_pred cEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
.++|+.++.. +..++...+++ +||.+.|+..+. +.+++++||++. .+++++++++++|++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 393 (399)
T 3tqx_A 328 PIIPVMLGDAQLATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVG 393 (399)
T ss_dssp SEEEEEEECHHHHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 8899988743 45567777666 599999876543 345679999974 68999999999999875
No 84
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=7.2e-35 Score=280.60 Aligned_cols=334 Identities=10% Similarity=0.067 Sum_probs=241.7
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCC--CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGY--GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
+..+|||+.+.+ ++++++.+.+++.+.+...........| +...+..+||+++++++ +++ ++|++++| +++
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sG-t~a 111 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----GYS-RALLFISG-FAA 111 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----TCS-EEEEESCH-HHH
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----CCC-cEEEeCCc-HHH
Confidence 456899999985 5567889999999988764321112233 45578899999999998 664 67777777 677
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-CCccEEEEcCCCC
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-ARTDIIFFCSPNN 216 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~p~n 216 (433)
+.+ +..++++||.|++++|+|+.+...++..| .+++.++..+...+...+... ++++++++++|||
T Consensus 112 ~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~n 179 (384)
T 1bs0_A 112 NQAVIAAMMAKEDRIAADRLSHASLLEAASLSP------------SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFS 179 (384)
T ss_dssp HHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSS------------SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCT
T ss_pred HHHHHHHhCCCCcEEEEcccccHHHHHHHHHcC------------CCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 775 67778999999999999999998888887 367777653211111112221 2367788889999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc-cccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI-FEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
|||.+++ +++|.++|++||++||+||+|+.+.+.....++ ..++. +..++++||||+++++| ||+++++++
T Consensus 180 ptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~~~G---G~~~~~~~~ 251 (384)
T 1bs0_A 180 MDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV--KPELLVVTFGKGFGVSG---AAVLCSSTV 251 (384)
T ss_dssp TTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC--CCSEEEEESSSTTSSCC---EEEEECHHH
T ss_pred CCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCC--CCcEEEeeccchhhccC---cEEEeCHHH
Confidence 9999999 789999999999999999999875543111112 12221 12389999999998666 999998877
Q ss_pred cccCCcchhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEE
Q 045431 296 LFSDGFPVAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVW 373 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~ 373 (433)
+ +.+.... .......+.+.+.++.++++.....+.++.+++++++++.+.+.|+++|+++.+ ..++++|
T Consensus 252 ~--------~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~ 322 (384)
T 1bs0_A 252 A--------DYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD-SCSAIQP 322 (384)
T ss_dssp H--------HHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS-CCSSBCC
T ss_pred H--------HHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccC-CCCCEEE
Confidence 5 4444321 112224778888877777753211156788899999999999999998888764 5778888
Q ss_pred EECCC-CChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeecc--ChhHHHHHHHHHHHh
Q 045431 374 VQFPG-RSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 374 ~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~~--~~~~l~~~l~~l~~~ 431 (433)
+.++. .+..++...+.++ ||.+.||..|+ +.+.+++||++.. +++++++++++|+++
T Consensus 323 ~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 323 LIVGDNSRALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EEEESHHHHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 88863 2355666676655 99999998775 2345789999753 899999999999875
No 85
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=3.6e-34 Score=279.50 Aligned_cols=335 Identities=15% Similarity=0.169 Sum_probs=240.5
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCC----CHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEGYSGYGAEQG----EKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
++..+|||+.|++ +++.++.+.+++.+++.++. .+...|....| ..+|++.+++++ +.+ +.+++++|+
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~G~~~~~~~l~~~la~~~----g~~-~~i~~~sGs 134 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFG--SGTCGSRMLNGTFHDHMEVEQALRDFY----GTT-GAIVFSTGY 134 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHC--SCCCSCTTTTCCCHHHHHHHHHHHHHH----TCS-EEEEESCHH
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHHhC--CCCcccccccCCcHHHHHHHHHHHHHh----CCC-ceEEecCcH
Confidence 4567899999986 44678899999999987643 12223323334 478888888887 553 566666666
Q ss_pred HHHHH-HHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-C-CccEEEEc
Q 045431 136 KCDIS-RLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-A-RTDIIFFC 212 (433)
Q Consensus 136 ~~al~-~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~l~ 212 (433)
. ++. ++..++++||.|+++.|+|+++...++..| .+++.++..+...+...+... + ++++|+++
T Consensus 135 ~-a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g------------~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~ 201 (427)
T 2w8t_A 135 M-ANLGIISTLAGKGEYVILDADSHASIYDGCQQGN------------AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLE 201 (427)
T ss_dssp H-HHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSC------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred H-HHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcC------------CeeEEeCCCCHHHHHHHHHhccCCCCeEEEEc
Confidence 5 555 467788999999999999999999888888 366666643211111111111 1 68899999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc-cCCCCcceEEEecccccccccccceeeeec
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE-IPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
+|+||||.+++ +++|.++|++||+++|+||+|+.+.++....++.+ ++-.++.+++++||||++|++| ||+++
T Consensus 202 ~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~ 275 (427)
T 2w8t_A 202 GVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVS 275 (427)
T ss_dssp SEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEE
T ss_pred CCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEe
Confidence 99999999998 88999999999999999999998766533333333 2212345799999999998777 99999
Q ss_pred cccccccCCcchhHHHHHH-H-hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC-C
Q 045431 292 PKELLFSDGFPVAKDFNRI-V-CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK-N 368 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~ 368 (433)
+++++ +.+... . .....+.+++.+.++.+.++.. +++++++++++++++++.+.|+++|+.+..+. .
T Consensus 276 ~~~l~--------~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 345 (427)
T 2w8t_A 276 NHPKF--------EAVRLACRPYIFTASLPPSVVATATTSIRKL--MTAHEKRERLWSNARALHGGLKAMGFRLGTETCD 345 (427)
T ss_dssp CCTTG--------GGGGGTCHHHHSSCCCCHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCC
T ss_pred CHHHH--------HHHHHhcccccccCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCC
Confidence 98875 333221 1 1122345666666655666532 12477889999999999999998888887334 6
Q ss_pred ccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCC-CCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 369 APYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGP-GGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 369 g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+.++|+.++. ....++...|+++ ||.+.|+..|+. .+.+++||++. .+++++++++++|++++
T Consensus 346 ~~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l 412 (427)
T 2w8t_A 346 SAIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAG 412 (427)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 7889999874 2345666776665 999999987753 34578999975 48999999999998875
No 86
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=100.00 E-value=2.2e-34 Score=278.82 Aligned_cols=339 Identities=13% Similarity=0.102 Sum_probs=240.8
Q ss_pred CCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCCC--CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 62 DAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQEG--YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 62 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
+.+++++..+++ +++.++.+.+++.+.+.+...... ...|+...+..++|+++|+++ +. +++|++|+|++ +
T Consensus 45 g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~-~~~i~~~sG~~-a 118 (401)
T 2bwn_A 45 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----QK-EAALVFSSAYN-A 118 (401)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----TC-SEEEEESCHHH-H
T ss_pred CCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh----CC-CcEEEECCcHH-H
Confidence 345789888776 455567899999999876432111 224555668899999999997 54 58899999988 4
Q ss_pred HHH-HHHhc--CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-C-CCccEEEEcC
Q 045431 139 ISR-LQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-V-ARTDIIFFCS 213 (433)
Q Consensus 139 l~~-l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~l~~ 213 (433)
+.. +..++ .+||.|++++|+|+++...++..| .+++.++.++...+...+.. . +++++|++++
T Consensus 119 ~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~ 186 (401)
T 2bwn_A 119 NDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNA------------GPKRIFRHNDVAHLRELIAADDPAAPKLIAFES 186 (401)
T ss_dssp HHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSC------------CCEEEECTTCHHHHHHHHHHSCTTSCEEEEEES
T ss_pred HHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcC------------CeEEEEcCCCHHHHHHHHHhhccCCceEEEEec
Confidence 444 34333 599999999999999998888877 46777776421111111111 1 4788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC-CcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA-KEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
|+||||.+++ +++|.++|++||+++|+||+|+...+.....++....+. .+.+++++||||++|++| ||++++
T Consensus 187 ~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~ 260 (401)
T 2bwn_A 187 VYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS 260 (401)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEEC
T ss_pred CcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecC
Confidence 9999999999 789999999999999999999954443222222211111 234689999999999888 999998
Q ss_pred ccccccCCcchhHHHHHHHh--hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 293 KELLFSDGFPVAKDFNRIVC--TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
++++ +.+..... ....+.+.+.+.++.++++......+++++++++++++++.+.|++.|+.+.++. +.
T Consensus 261 ~~~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~ 331 (401)
T 2bwn_A 261 ARMV--------DAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHG-SH 331 (401)
T ss_dssp HHHH--------HHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCS-SS
T ss_pred HHHH--------HHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCCC-CC
Confidence 7764 44433211 1122345577776666665322223578889999999999999998888877664 45
Q ss_pred EEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCC-CCCeEEEeec--cChhHHHHHHHHHHHhhC
Q 045431 371 YVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPG-GEGFIRVSAF--GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 371 ~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~-~~~~iRi~~~--~~~~~l~~~l~~l~~~l~ 433 (433)
++|+.++. .+..++...+++++||.+.|+..|+.. +.+++|+++. .+++++++++++|+++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 332 IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 89999874 344566667765669999998877533 4468999975 589999999999998753
No 87
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=9.2e-34 Score=272.59 Aligned_cols=332 Identities=16% Similarity=0.161 Sum_probs=237.3
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcc-cCCCCC--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALS-TQEGYS--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+.|+.+... ++|+.+.+++.+.+.+.. +..... .|....+..++++++++++ ++++++|++|+|+++++.+
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~~~ 77 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL----GVSPSEIFFTSCATESINWI 77 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----TSCGGGEEEESCHHHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc----CCCCCeEEEECCHHHHHHHH
Confidence 556666654 788999999999886421 101111 2333456789999999998 7888999999999999997
Q ss_pred HHHhc----CCCCEEEEeCCCChhhhhhH---HHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEE
Q 045431 142 LQIVF----GSNVTMAVQDPSYPAYVDSS---VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFF 211 (433)
Q Consensus 142 l~~l~----~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l 211 (433)
+..++ ++||+|++++|+|+++...+ +..| .+++.++.+.+..++.+ +++ .+++++|++
T Consensus 78 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~ 145 (384)
T 1eg5_A 78 LKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKG------------FKVKYVPVDSRGVVKLEELEKLVDEDTFLVSI 145 (384)
T ss_dssp HHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTT------------CEEEECCBCTTSCBCHHHHHHHCCTTEEEEEE
T ss_pred HHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcC------------CEEEEEccCCCCccCHHHHHHHhCCCCeEEEE
Confidence 56665 79999999999999887666 4556 47788887643222221 221 257899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcC--CEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNG--SIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~--~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++|+||||.+++ +++|.++|++|| ++||+||+|+ + ...+.++..+ +.++++.|+||++|++| +||+
T Consensus 146 ~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~-~--~~~~~~~~~~----~~di~~~s~sK~~g~~G--~G~~ 213 (384)
T 1eg5_A 146 MAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT-I--GKIPFSLEKL----EVDYASFSAHKFHGPKG--VGIT 213 (384)
T ss_dssp ESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT-T--TTSCCCCTTT----CCSEEEEEGGGGTSCTT--CEEE
T ss_pred ECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh-c--CCcccCchhc----CCCEEEecHHHhcCCCc--eEEE
Confidence 999999999999 688999999999 9999999998 2 2122233222 34689999999998778 7999
Q ss_pred eccccc-cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC-
Q 045431 290 VIPKEL-LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK- 367 (433)
Q Consensus 290 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~- 367 (433)
++++++ +.... ..............+.+.|.++.++++.. .+++++.+++++++++.+.+.|++.|+.+..+.
T Consensus 214 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 288 (384)
T 1eg5_A 214 YIRKGVPIRPLI----HGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLE 288 (384)
T ss_dssp EECTTSCCCCSB----CSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTT
T ss_pred EEcCCCcccccc----ccCcccccccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcc
Confidence 999875 21100 00000011233457888888888777642 246788999999999999999998888876553
Q ss_pred --CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC-----------------CCCeEEEeec--cChhHHHHHHH
Q 045431 368 --NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-----------------GEGFIRVSAF--GHRGNVLEACK 426 (433)
Q Consensus 368 --~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~~--~~~~~l~~~l~ 426 (433)
.+.++++.+++.+..++...+. ++||.+.+|..|+.. ..+++||++. .++++++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 367 (384)
T 1eg5_A 289 ISLPNTLSVSFPNIRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLK 367 (384)
T ss_dssp SBCTTEEEEECTTCCHHHHHHHHH-HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHH
T ss_pred cCCCCEEEEEeCCCCHHHHHHHHh-hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHH
Confidence 2457888887656667776664 569999999877532 1478999986 68999999999
Q ss_pred HHHHhh
Q 045431 427 RFKHLY 432 (433)
Q Consensus 427 ~l~~~l 432 (433)
+|++++
T Consensus 368 ~l~~~~ 373 (384)
T 1eg5_A 368 KIEEIL 373 (384)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 88
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=8.4e-35 Score=281.74 Aligned_cols=333 Identities=15% Similarity=0.143 Sum_probs=241.4
Q ss_pred CCCceEEecCCCCCCC--ChHHHHHHHHHHHhhcccCCCCCCC--CCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 61 PDAEVISLGIGDTTEP--IPEVITSALAKRSYALSTQEGYSGY--GAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
++...|||+.+.+ ++ .++.+.+++.+.+..+........| +...+..+||+++++++ +++ ++|++++|+.
T Consensus 43 ~g~~~id~~~~~~-~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sGs~ 116 (401)
T 1fc4_A 43 DGSHVINFCANNY-LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----GME-DAILYSSCFD 116 (401)
T ss_dssp TSCEEEECCCSCT-TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----TCS-EEEEESCHHH
T ss_pred CCccEEEeeccCc-ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----CCC-cEEEeCChHH
Confidence 4567899999965 43 5899999999988764321111223 22567899999999998 666 7787877755
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-C---CccEEEE
Q 045431 137 CDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-A---RTDIIFF 211 (433)
Q Consensus 137 ~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~i~l 211 (433)
++.+ +..++++||.|+++.|+|+.+...++..| .+++.++..+...+...+... + ++++|++
T Consensus 117 -a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~ 183 (401)
T 1fc4_A 117 -ANGGLFETLLGAEDAIISDALNHASIIDGVRLCK------------AKRYRYANNDMQELEARLKEAREAGARHVLIAT 183 (401)
T ss_dssp -HHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSC------------SEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred -HHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcC------------CceEEECCCCHHHHHHHHHHhhccCCCceEEEE
Confidence 6665 67788999999999999988887777777 366666642111111111111 1 6889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccc-cccc-CCCC-CcccccCCCCcceEEEecccccc-ccccccee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYIS-DDNP-RSIFEIPGAKEVAIETSSFSKYA-GFTGVRLG 287 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~-~~~~-~~~~~~~~~~~~vi~i~S~sK~~-~~~G~r~G 287 (433)
++||||||.+++ +++|.++|++||+++|+||+|+ ++.. .+.+ .+...+. ++.+++++||||++ |.+| |
T Consensus 184 ~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~--~~~di~~~s~sK~~~~~~g---G 255 (401)
T 1fc4_A 184 DGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM--GRVDIITGTLGKALGGASG---G 255 (401)
T ss_dssp ESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCT--TCCSEEEEESSSTTCSSSC---E
T ss_pred eCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCC--cCCcEEEecchhhccCCCC---E
Confidence 999999999999 8999999999999999999996 6653 3322 1112222 24569999999999 5444 9
Q ss_pred eeeccccccccCCcchhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
|++++++++ +.+.... .....+.+.+.|.++.+.++.. ...++.+++++++++++.+.|+++|+.+.
T Consensus 256 ~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~- 324 (401)
T 1fc4_A 256 YTAARKEVV--------EWLRQRSRPYLFSNSLAPAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAAGFTLA- 324 (401)
T ss_dssp EEEECHHHH--------HHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHTTCCBC-
T ss_pred EEEcCHHHH--------HHHHHhCcCceeCCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCccc-
Confidence 999988774 5554432 1123457888898888777632 11367888999999999999999888877
Q ss_pred CCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCC-CCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 366 GKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPG-GEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~-~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+..++++|++++. .+..++...+.++ ||.+.+|..|+.. +.+++||++. .+++++++++++|++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 394 (401)
T 1fc4_A 325 GADHAIIPVMLGDAVVAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp CSSSSEEEEEEECHHHHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCChHHHHHHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4688899999874 2345666666655 9999999877532 3568999975 58999999999999875
No 89
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=9.4e-34 Score=275.92 Aligned_cols=332 Identities=14% Similarity=0.158 Sum_probs=240.6
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCC--CCCCCCC--CCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQE--GYSGYGA--EQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKC 137 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~Y~~--~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~ 137 (433)
.++|+|+.+.++ +.|+.+.+++.+.+....... +...|++ ..+..++|+++++++ +. ++++|++|+|+++
T Consensus 27 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~ 101 (420)
T 1t3i_A 27 HPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NARSPREIVYTRNATE 101 (420)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc----CCCCCCeEEEcCChHH
Confidence 348999999997 788999999999887532111 2334543 467899999999997 66 6799999999999
Q ss_pred HHHH-HHHh----cCCCCEEEEeCCCChhh----hhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCC
Q 045431 138 DISR-LQIV----FGSNVTMAVQDPSYPAY----VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VAR 205 (433)
Q Consensus 138 al~~-l~~l----~~~gd~Vl~~~p~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 205 (433)
++.+ +..+ +++||+|++++|+|++. ....+..| .+++.++.+.+...+.+ +++ .++
T Consensus 102 a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~ 169 (420)
T 1t3i_A 102 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG------------AVLKFVQLDEQESFDLEHFKTLLSEK 169 (420)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC------------CEEEEECBCTTSSBCHHHHHHHCCTT
T ss_pred HHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcC------------cEEEEeccCCCCCcCHHHHHHhhCCC
Confidence 9997 5677 79999999999999984 45556677 47788887643222221 211 257
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+++|++++|+||||.+++ +++|.++|++||+++|+|++|+.... +..+..+ +.++++.|+||.+|.+|
T Consensus 170 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~~----~~di~~~s~sK~~~~~g-- 237 (420)
T 1t3i_A 170 TKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY---PLDVQLI----DCDWLVASGHKMCAPTG-- 237 (420)
T ss_dssp EEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCTT--
T ss_pred ceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc---cCchhhc----CCCEEEEehhhhcCCCc--
Confidence 899999999999999999 88999999999999999999985322 2223333 24589999999888667
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhh--------------------ccCCCcHHHHHHHHH-hcCcCChhHHHHHHHH
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCT--------------------CFNGASNISQAGGLA-CLSPEGFKAVHEVIGF 344 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~q~~~~~-~l~~~~~~~~~~~~~~ 344 (433)
+||++++++++ +.+...... ...+++.+.|.++.. +++.....++++++++
T Consensus 238 ~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 309 (420)
T 1t3i_A 238 IGFLYGKEEIL--------EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNY 309 (420)
T ss_dssp CEEEEECHHHH--------HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred eEEEEEchHHH--------hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 89999998774 222211110 112355666665443 3331111246788899
Q ss_pred HHHHHHHHHHHHhhc-CCeeecCC-----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC-----CC-CCeEEE
Q 045431 345 YKENTDIIVETFNSL-GFKVYGGK-----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP-----GG-EGFIRV 412 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----~~-~~~iRi 412 (433)
++++++.+.+.|++. |+++..+. .+.++++.+++.+..++... +.++||.+.+|..|.. .+ ++++||
T Consensus 310 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~g~~~~iRi 388 (420)
T 1t3i_A 310 EVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATM-VDQDGIAIRSGHHCTQPLHRLFDASGSARA 388 (420)
T ss_dssp HHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHH-HHTTTEECBCSCTTCHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHH-HHHCCeEEeeccccchHHHHhcCCCCeEEE
Confidence 999999999999998 88887664 25666677875455566554 5566999999975531 12 578999
Q ss_pred eec--cChhHHHHHHHHHHHhh
Q 045431 413 SAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 413 ~~~--~~~~~l~~~l~~l~~~l 432 (433)
++. .+++++++++++|++++
T Consensus 389 s~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 389 SLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHH
Confidence 975 48999999999998875
No 90
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=3.2e-33 Score=270.89 Aligned_cols=332 Identities=14% Similarity=0.154 Sum_probs=238.1
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCC----CCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGY----SGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKC 137 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~ 137 (433)
.+++.|+.+.++ +.|+.+.+++.+.+.+....... ..|.+..+..++|+++++++ +. ++++|++|+|+++
T Consensus 22 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~ 96 (406)
T 1kmj_A 22 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NARSAEELVFVRGTTE 96 (406)
T ss_dssp EECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc----CCCCCCeEEEeCChhH
Confidence 358999999987 67889999999988753210111 12334567889999999997 66 6799999999999
Q ss_pred HHHH-HHHh----cCCCCEEEEeCCCChhhhh----hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCC
Q 045431 138 DISR-LQIV----FGSNVTMAVQDPSYPAYVD----SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VAR 205 (433)
Q Consensus 138 al~~-l~~l----~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 205 (433)
++.+ +..+ +++||+|++++|+|++... ..+..| .+++.++.+.+...+.+ +++ .++
T Consensus 97 a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~l~~~ 164 (406)
T 1kmj_A 97 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG------------AELRVIPLNPDGTLQLETLPTLFDEK 164 (406)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHT------------CEEEEECBCTTSCBCGGGHHHHCCTT
T ss_pred HHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCC------------CEEEEEecCCCCCcCHHHHHHHhccC
Confidence 9997 5667 7999999999999987543 345566 47778887643222221 221 357
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+++|++++|+||||.+++ +++|.++|++||+++|+|++|+.... +.++... +.+++++|+||.+|++|
T Consensus 165 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~---~~~~~~~----~~d~~~~s~~K~~g~~G-- 232 (406)
T 1kmj_A 165 TRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQAL----DCDFYVFSGHKLYGPTG-- 232 (406)
T ss_dssp EEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCTT--
T ss_pred CeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC---CCccccc----CCCEEEEEchhccCCCC--
Confidence 899999999999999999 89999999999999999999985321 2222222 34589999999998777
Q ss_pred eeeeeccccccccCCcchhHHHHHHHh---------------------hccCCCcHHHHHHHH-HhcCcCChhHHHHHHH
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVC---------------------TCFNGASNISQAGGL-ACLSPEGFKAVHEVIG 343 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~q~~~~-~~l~~~~~~~~~~~~~ 343 (433)
+||++++++++ +.+..... ....+++.+.+.++. ++++.....+++++++
T Consensus 233 ~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 304 (406)
T 1kmj_A 233 IGILYVKEALL--------QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAE 304 (406)
T ss_dssp CEEEEECHHHH--------HHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cEEEEEeHHHH--------hhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 89999998774 22211110 011234556666555 4443211124678888
Q ss_pred HHHHHHHHHHHHHhhc-CCeeecCC-CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC------CCCCeEEEeec
Q 045431 344 FYKENTDIIVETFNSL-GFKVYGGK-NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------GGEGFIRVSAF 415 (433)
Q Consensus 344 ~~~~~~~~l~~~l~~~-g~~~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~~~iRi~~~ 415 (433)
+++++++++.+.|+++ |+.+..+. .+.++++.+++.+..++...+ .++||.+.||..|.. ..++++||++.
T Consensus 305 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~ 383 (406)
T 1kmj_A 305 YEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLA 383 (406)
T ss_dssp HHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHH-hhCCcEEEeccccchHHHHhcCCCCeEEEEee
Confidence 9999999999999998 88887762 344555567755666666555 556999999886532 12579999974
Q ss_pred --cChhHHHHHHHHHHHhh
Q 045431 416 --GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 416 --~~~~~l~~~l~~l~~~l 432 (433)
.+++++++++++|++++
T Consensus 384 ~~~t~~~i~~~~~~l~~~~ 402 (406)
T 1kmj_A 384 MYNTHEEVDRLVTGLQRIH 402 (406)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 38999999999998875
No 91
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=1.2e-33 Score=272.83 Aligned_cols=316 Identities=15% Similarity=0.134 Sum_probs=236.4
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC-cEEEcCChHHHHHH-HHHhcCCCCEE
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG-DIFVSDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~~~al~~-l~~l~~~gd~V 152 (433)
.+.|+.+.+++.+.+. ..|++ ...++++++++++.+.++++++ +|++|+|+++++.+ +..++++||+|
T Consensus 43 ~~~~~~v~~a~~~~~~--------~~~~~--~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~V 112 (393)
T 1vjo_A 43 SNAHPSVLQAMNVSPV--------GHLDP--AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVV 112 (393)
T ss_dssp CCCCHHHHHHHSSCCC--------CTTSH--HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCHHHHHHHhcccc--------cccCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEE
Confidence 4677888887766442 14533 2567888888888775577778 99999999999997 67778999999
Q ss_pred EEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCccccCCCHHH
Q 045431 153 AVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGAAATREQ 226 (433)
Q Consensus 153 l~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~~~~~~~ 226 (433)
++++|+|++ +...++..| .+++.++.+.+...+.+ +++ .+ ++++|++++|+||||.+++
T Consensus 113 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~--- 177 (393)
T 1vjo_A 113 LIGVAGYFGNRLVDMAGRYG------------ADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP--- 177 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---
T ss_pred EEEcCChhHHHHHHHHHHcC------------CceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc---
Confidence 999999999 888888888 47888887653222221 221 13 7889999999999999998
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHH
Q 045431 227 LTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKD 306 (433)
Q Consensus 227 ~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~ 306 (433)
+++|.++|++||++||+||+|+ +. ..+..+ .. .+.+++++|+||+++.+| |+||++++++++ +.
T Consensus 178 l~~i~~l~~~~~~~li~Dea~~-~g--~~~~~~---~~-~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~--------~~ 241 (393)
T 1vjo_A 178 LEGVGELCREFGTLLLVDTVTS-LG--GVPIFL---DA-WGVDLAYSCSQKGLGCSP-GASPFTMSSRAI--------EK 241 (393)
T ss_dssp CTTHHHHHHHHTCEEEEECTTT-TT--TSCCCT---TT-TTCSEEECCSSSTTCSCS-SCEEEEECHHHH--------HH
T ss_pred HHHHHHHHHHcCCEEEEECCcc-cc--CcCCcc---cc-cCccEEEEcCcccccCCC-ceEEEEECHHHH--------HH
Confidence 7899999999999999999999 32 122222 21 245689999999998666 999999998874 32
Q ss_pred HHHH-------------------HhhccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC
Q 045431 307 FNRI-------------------VCTCFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG 366 (433)
Q Consensus 307 ~~~~-------------------~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 366 (433)
+... ...... +.+.+.|.++.++++.....++++++++++++++++.+.|++.|+.+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 321 (393)
T 1vjo_A 242 LQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVE 321 (393)
T ss_dssp HHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSC
T ss_pred HhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 2210 001122 57888888888888643223578899999999999999999888887765
Q ss_pred CC---ccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--c-cChhHHHHHHHHHHHhhC
Q 045431 367 KN---APYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--F-GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 367 ~~---g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~-~~~~~l~~~l~~l~~~l~ 433 (433)
.+ +.++|+.++ +.+..++...+.+++||.+.||..|. .++++||++ . .+++++++++++|+++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 322 KEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp GGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 43 457888887 45667777777665699999998664 357999994 3 366789999999999874
No 92
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=5.7e-33 Score=263.93 Aligned_cols=321 Identities=14% Similarity=0.092 Sum_probs=228.8
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEE
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~V 152 (433)
+.++|+.+.+++.+.+.. ...|....+..++|+++++++ ++++++|++|+|+++++.+ +..++++||+|
T Consensus 9 p~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v 78 (352)
T 1iug_A 9 PVRLHPKALEALARPQLH------HRTEAAREVFLKARGLLREAF----RTEGEVLILTGSGTLAMEALVKNLFAPGERV 78 (352)
T ss_dssp SCCCCHHHHHHHHSCCCC------TTSHHHHHHHHHHHHHHHHHH----TCSSEEEEEESCHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCCHHHHHHhccCCCC------ccCHHHHHHHHHHHHHHHHHh----CCCCceEEEcCchHHHHHHHHHhccCCCCeE
Confidence 356788888888776531 111222345688999999998 7778899999999999997 57778999999
Q ss_pred EEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCccc-CCCCCCCccEEEEcCCCCccccCCCHHHHHH
Q 045431 153 AVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFP-DLSTVARTDIIFFCSPNNPTGAAATREQLTR 229 (433)
Q Consensus 153 l~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~ 229 (433)
++++|+|+++. ..++..| .+++.++.+.++.++. ++++ +++++|++++|+||||.+++ +++
T Consensus 79 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~-~~~~~v~~~~~~nptG~~~~---l~~ 142 (352)
T 1iug_A 79 LVPVYGKFSERFYEIALEAG------------LVVERLDYPYGDTPRPEDVAK-EGYAGLLLVHSETSTGALAD---LPA 142 (352)
T ss_dssp EEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCTTTSCC-SSCSEEEEESEETTTTEECC---HHH
T ss_pred EEEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHhc-cCCcEEEEEEecCCcceecC---HHH
Confidence 99999999975 3334456 4788888765432322 2344 67899999999999999999 789
Q ss_pred HHHHHHHc--CCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCc-----c
Q 045431 230 LVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF-----P 302 (433)
Q Consensus 230 i~~~a~~~--~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~-----~ 302 (433)
|.++|++| |++||+|++|+.. ..+.++... +..++++|+||+++ ++.++||++++++++..-.. .
T Consensus 143 i~~l~~~~~~~~~li~D~a~~~~---~~~~~~~~~----~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~ 214 (352)
T 1iug_A 143 LARAFKEKNPEGLVGADMVTSLL---VGEVALEAM----GVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLD 214 (352)
T ss_dssp HHHHHHHHCTTCEEEEECTTTBT---TBCCCSGGG----TCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTC
T ss_pred HHHHHHhhCCCCEEEEECCcccc---Ccceecccc----CeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceee
Confidence 99999999 9999999999731 112222222 23588999999553 33358999998886521000 0
Q ss_pred hhHHHHHH-HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC-CccEEEEECC-CC
Q 045431 303 VAKDFNRI-VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK-NAPYVWVQFP-GR 379 (433)
Q Consensus 303 ~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~~~~~~~~-~~ 379 (433)
+...+... ........+...+.++.++++... .++++.+++++++++++.+.|+++|+.+..+. .+.++|+.++ +.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T 1iug_A 215 LARELKAQKEGESAWTPAINLVLAVAAVLEEVL-PRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGV 293 (352)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTC
T ss_pred HHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCC
Confidence 01111111 112233456677766666665321 23688899999999999999998888887664 6789999998 55
Q ss_pred ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 380 SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 380 ~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+..++...+.++ ||.+.+|.. +..++++||++. .+++++++++++|++++
T Consensus 294 ~~~~~~~~l~~~-gi~v~~~~~--~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 345 (352)
T 1iug_A 294 PYARVKEAFAQR-GAVIAGGQG--PLKGKVFRLSLMGAYDRYEALGVAGMFREVL 345 (352)
T ss_dssp CHHHHHHHHHTT-TEECEECCG--GGTTTEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CEEEEeCCC--ccCCCEEEEEccccCCHHHHHHHHHHHHHHH
Confidence 667777776655 999999873 234679999975 47999999999998875
No 93
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.3e-33 Score=266.19 Aligned_cols=322 Identities=12% Similarity=0.096 Sum_probs=235.1
Q ss_pred CCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CCcEEEcCChHHHHHH-HHHhcCCCCEE
Q 045431 75 EPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~~~al~~-l~~l~~~gd~V 152 (433)
.+.++.+.+++.+.+. ..|++ ...++++++++++.+.++++ +++|++|+|+++++.+ +..++++||+|
T Consensus 29 ~~~~~~v~~a~~~~~~--------~~~~~--~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~v 98 (386)
T 2dr1_A 29 VACFPEVLEIMKVQMF--------SHRSK--EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKV 98 (386)
T ss_dssp CCCCHHHHHHTTSCCC--------CTTSH--HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEE
T ss_pred cCCcHHHHHHHhcccc--------cccCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeE
Confidence 3567777777665432 24533 23678888888887645665 7789999999999997 57778999999
Q ss_pred EEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC----CCCccEEEEcCCCCccccCCCHH
Q 045431 153 AVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST----VARTDIIFFCSPNNPTGAAATRE 225 (433)
Q Consensus 153 l~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~l~~p~nPtG~~~~~~ 225 (433)
++++|+|++ +...++..| .+++.++.+.+...+.+ +++ .+++++|++++|+||||.+++
T Consensus 99 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~-- 164 (386)
T 2dr1_A 99 LVTIIGAFGKRYKEVVESNG------------RKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP-- 164 (386)
T ss_dssp EEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC--
T ss_pred EEEcCCchhHHHHHHHHHhC------------CceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC--
Confidence 999999998 777778788 47888887653222222 221 357899999999999999988
Q ss_pred HHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCc----
Q 045431 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGF---- 301 (433)
Q Consensus 226 ~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~---- 301 (433)
+++|.++|++||++||+|++|+.+.. +.++.. .+.+++++|+||+++.+ .++||++++++++..-..
T Consensus 165 -l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~----~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~ 235 (386)
T 2dr1_A 165 -LPELAKVAKEHDKLVFVDAVSAMGGA---DIKFDK----WGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPER 235 (386)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTTBTTB---CCCTTT----TTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTC
T ss_pred -HHHHHHHHHHcCCeEEEEccccccCc---cccccc----cCCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCC
Confidence 79999999999999999999996543 122222 23569999999999854 349999999887511000
Q ss_pred ----chhHHHHHH--HhhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcCCeeecCC---CccE
Q 045431 302 ----PVAKDFNRI--VCTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLGFKVYGGK---NAPY 371 (433)
Q Consensus 302 ----~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~ 371 (433)
.....+... ......+.+.+.|.++.++++..... ++++++++++++++.+.+.|+++|+.+..+. .+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 315 (386)
T 2dr1_A 236 GWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTI 315 (386)
T ss_dssp CSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSE
T ss_pred ceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCce
Confidence 000001111 11334457788888887777632112 3678899999999999999998888877654 4788
Q ss_pred EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 372 VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 372 ~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+|+.++ +.+..++...+.++ ||.+.||..+. ..+++||++. .+++++++++++|++++
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 376 (386)
T 2dr1_A 316 TAVLTPPGIKGDEVYEAMRKR-GFELAKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREVI 376 (386)
T ss_dssp EEEECCTTCCHHHHHHHHHHT-TEECEECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHC-CeEEecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999997 55677777777766 99999988543 3579999976 58999999999998875
No 94
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=100.00 E-value=5.5e-33 Score=268.73 Aligned_cols=316 Identities=15% Similarity=0.126 Sum_probs=225.3
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCH---HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEK---PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~---~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
..++.++|+++.|+.+.+++.+.+...........|+. .|.+ +|++++++++ +.+ ++++++|+++++.+
T Consensus 21 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~----g~~--~~i~~~~g~~ai~~~ 93 (404)
T 1e5e_A 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLE----KTE--ACVATSSGMGAIAAT 93 (404)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHh----CCC--cEEEeCChHHHHHHH
Confidence 46899999998888777777666542211134557866 6777 8999999998 553 67777777899987
Q ss_pred HHHhcCCCCEEEEeCCCChhhhh----hHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVD----SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNP 217 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nP 217 (433)
+..++++||+|++++|+|+++.. .++..| .+++.++.++...+...+ .+++++|++++|+||
T Consensus 94 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~i--~~~t~~v~l~~p~Np 159 (404)
T 1e5e_A 94 VLTILKAGDHLISDECLYGCTHALFEHALTKFG------------IQVDFINTAIPGEVKKHM--KPNTKIVYFETPANP 159 (404)
T ss_dssp HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT------------CEEEEECTTSTTHHHHHC--CTTEEEEEEESSCTT
T ss_pred HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcC------------CEEEEECCCCHHHHHHhc--CCCCcEEEEECCCCC
Confidence 57788999999999999999887 566677 477788775221111111 257899999999999
Q ss_pred cccCCCHHHHHHHHHHHHH-cCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce-eeeeccccc
Q 045431 218 TGAAATREQLTRLVQFAKD-NGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKEL 295 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~ 295 (433)
||.+++ +++|+++|++ ||+++|+||+|+.+.+. .++ .+ ++++++.|+||+++++|+|+ ||+++++++
T Consensus 160 tG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~---~~~-~~----~~di~~~S~sK~~~~~g~ri~G~~~~~~~~ 228 (404)
T 1e5e_A 160 TLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT---NPV-DF----GVDVVVHSATKYINGHTDVVAGLICGKADL 228 (404)
T ss_dssp TCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC---CGG-GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHH
T ss_pred CCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhC---Ccc-cc----CCEEEEEcCccccCCCCCCeEEEEEECHHH
Confidence 999997 8999999999 99999999999987553 122 22 35699999999999999998 999999887
Q ss_pred cccCCcchhH-HHHHHHhhc-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC-C-----------
Q 045431 296 LFSDGFPVAK-DFNRIVCTC-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-F----------- 361 (433)
Q Consensus 296 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~----------- 361 (433)
+ + .+....... ....+++.|.++.+.++. +....++..++.+.+.+.+++.. +
T Consensus 229 ~--------~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~ 295 (404)
T 1e5e_A 229 L--------QQIRMVGIKDITGSVISPHDAWLITRGLST-----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDH 295 (404)
T ss_dssp H--------HHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSS
T ss_pred H--------HHHHHHHHHhCCCCCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence 5 4 555444333 345788888888888863 23344455666666777776542 2
Q ss_pred ---eeecC----CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC-----------------------CC--CCe
Q 045431 362 ---KVYGG----KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP-----------------------GG--EGF 409 (433)
Q Consensus 362 ---~~~~~----~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----------------------~~--~~~ 409 (433)
.+..+ .++++.| ++++ ..+....++++.|| +.+|..|+. .+ +++
T Consensus 296 p~~~~~~~~~~~~g~~~~~-~~~~--~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~ 371 (404)
T 1e5e_A 296 EGHDIAKKQMRMYGSMITF-ILKS--GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGM 371 (404)
T ss_dssp TTHHHHHHHCSSCCSEEEE-EETT--HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTE
T ss_pred ccHHHHHhhCCCCceEEEE-EeCC--CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCe
Confidence 11111 1444454 8764 23445567778898 556655542 22 689
Q ss_pred EEEeeccChhHHHHHHHHHHHhh
Q 045431 410 IRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 410 iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+|||+.. +++++++++|++++
T Consensus 372 iRis~g~--e~~~~li~~l~~al 392 (404)
T 1e5e_A 372 IRLSVGI--EDADELIADFKQGL 392 (404)
T ss_dssp EEEECCS--SCHHHHHHHHHHHH
T ss_pred EEEEeCC--CCHHHHHHHHHHHH
Confidence 9999876 77888888887764
No 95
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=2.9e-33 Score=268.47 Aligned_cols=335 Identities=14% Similarity=0.159 Sum_probs=235.7
Q ss_pred CCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+||+.+.+ ++. +++.+.+++.+.+.+.. .....| +..+..+|++++++++ ++ +++|++|+|+++
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~--~~~~~y-~~~~~~~l~~~la~~~----g~-~~~v~~~~g~t~ 97 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLL--HVSNLY-ENPWQEELAHKLVKHF----WT-EGKVFFANSGTE 97 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCS--CCCTTB-CCHHHHHHHHHHHHTS----SS-CEEEEEESSHHH
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhcc--ccCccc-CCHHHHHHHHHHHhhc----CC-CCeEEEeCchHH
Confidence 4557899998875 455 78999999999887542 222357 4567889999999986 66 489999999999
Q ss_pred HHHHH-HH---hc---CCC-CEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCCcccCCCCCCCccE
Q 045431 138 DISRL-QI---VF---GSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENGFFPDLSTVARTDI 208 (433)
Q Consensus 138 al~~l-~~---l~---~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (433)
++.++ .. ++ ++| |+|++++|+|+++...+...+...++. ........+..++..+.+.+...+ .+++++
T Consensus 98 a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~ 175 (375)
T 2eh6_A 98 SVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLL--DEETAG 175 (375)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTC--CTTEEE
T ss_pred HHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHh--cCCeEE
Confidence 99874 32 35 788 999999999998877665555322100 000000113333332111111111 257899
Q ss_pred EEEcCCCCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 209 IFFCSPNNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 209 i~l~~p~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
|++++|+||||.+ .+.+++++|.++|++||+++|+||+|+++...+.+.++..+....+ ++ ||||.++ +|+|+|
T Consensus 176 v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d-~~---s~SK~~~-~g~~~G 250 (375)
T 2eh6_A 176 IIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPD-VI---ALAKGLG-GGVPIG 250 (375)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-EE---EECGGGG-TTSCCE
T ss_pred EEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCC-EE---EEccccc-CCCCeE
Confidence 9998999999999 4688899999999999999999999997655443333333321122 23 8899998 899999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK 367 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 367 (433)
|++++++++ +.+.........+.+.+.|.++.++++. +++..++++++++++.+.|++++....+ .
T Consensus 251 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~ 316 (375)
T 2eh6_A 251 AILAREEVA--------QSFTPGSHGSTFGGNPLACRAGTVVVDE-----VEKLLPHVREVGNYFKEKLKELGKGKVK-G 316 (375)
T ss_dssp EEEEEHHHH--------TTCCTTSCCCSSTTCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTSSEEE-E
T ss_pred EEEEcHHHH--------hhhcCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCce-E
Confidence 999988764 2222211223445688888887777653 1267788889999999999887654433 4
Q ss_pred CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.|+++|++++. +..++...+.+ +||.+.|+ +++++||++ ..+++++++++++|++++
T Consensus 317 ~g~~~~~~~~~-~~~~~~~~l~~-~gi~~~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 317 RGLMLGLELER-ECKDYVLKALE-KGLLINCT------AGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp ETTEEEEECSS-CCHHHHHHHHH-TTEECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEcC-cHHHHHHHHHH-CCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 67899999974 45667777765 69999885 257899995 468999999999999864
No 96
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=4.2e-32 Score=263.49 Aligned_cols=331 Identities=14% Similarity=0.077 Sum_probs=235.1
Q ss_pred CCCceEEecCCCC-CCCChHHHHHHHHHHHhhcccCC--CCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT-TEPIPEVITSALAKRSYALSTQE--GYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++..++||+.+++ +++.++.+.+++.+++.++.... ....|+......++++.+++++ +.+ +.|++++| ++
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sG-t~ 130 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT----GFD-ECLLSQSG-WN 130 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH----TCS-EEEEESCH-HH
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh----CCC-eEEEecch-HH
Confidence 3567899988875 46678999999999998643211 1122343456778999999887 544 35666666 57
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC---CCCccEEEEcC
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST---VARTDIIFFCS 213 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~l~~ 213 (433)
++.. +..++++||.|++++|+|+.+...+...| .+++.++..+ ..++++ ..++++|++++
T Consensus 131 a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~d----~~~le~~l~~~~~~~vi~~~ 194 (409)
T 3kki_A 131 ANVGLLQTICQPNTNVYIDFFAHMSLWEGARYAN------------AQAHPFMHNN----CDHLRMLIQRHGPGIIVVDS 194 (409)
T ss_dssp HHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTT------------CEEEEECTTC----HHHHHHHHHHHCSCEEEEES
T ss_pred HHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcC------------CeEEEecCCC----HHHHHHHHHhcCCeEEEECC
Confidence 7775 78889999999999999999999888888 3666665421 111221 13478999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccc-cCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFE-IPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
|+||||.+++ +++|.++|++||++||+||+|+...+......... .+..++..++++||||+++++ .||++++
T Consensus 195 ~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~ 268 (409)
T 3kki_A 195 IYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR---AGAIWCN 268 (409)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS---CEEEEES
T ss_pred CCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC---ceEEEEC
Confidence 9999999999 88999999999999999999997444321122211 221123458999999999855 4999999
Q ss_pred ccccccCCcchhHHHHHHHh--hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCcc
Q 045431 293 KELLFSDGFPVAKDFNRIVC--TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~ 370 (433)
++++ +.+..... ......+.+.+.++.+.++.. +..++++++++++++++.+.|++.|+.+. ..++
T Consensus 269 ~~~~--------~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~ 336 (409)
T 3kki_A 269 NEVN--------RCVPFISYPAIFSSTLLPYEAAGLETTLEII--ESADNRRQHLDRMARKLRIGLSQLGLTIR--SESQ 336 (409)
T ss_dssp SSGG--------GTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTTCCCC--CSSS
T ss_pred HHHH--------HHHHHhCcCccccCCCcHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCccC--CCCC
Confidence 9885 33333211 112235566666666666522 22267888999999999999999888765 3788
Q ss_pred EEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
++|+.++.. ...++...++++ ||.+.|+..+. +.+.+++||++. .+++++++++++|++++
T Consensus 337 ~~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 337 IIGLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp EEEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 899988742 344566676665 99998865432 345689999974 58999999999999876
No 97
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=1.2e-33 Score=270.55 Aligned_cols=326 Identities=13% Similarity=0.086 Sum_probs=229.3
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhccc--C--CCCCCCCCCCCCHHHHHH-HHHHHhccCCCCCCcEEEcCChHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALST--Q--EGYSGYGAEQGEKPLRAA-IASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~Y~~~~g~~~lr~~-la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
+++|.|+.|.+..++++.+.+++.+.+..... . .....|.+..+..++++. +++++ +.+ +|++|+|+++
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~----~~~--~v~~~~g~t~ 80 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL----GCD--VARVTNGARE 80 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT----TSS--EEEEESSHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc----CCC--EEEEeCChHH
Confidence 35788888766667889999999987764210 0 012245567899999999 99997 655 9999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEee--cCccCCcccC-CCC--C-----CCc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMR--CTAENGFFPD-LST--V-----ART 206 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~--~-----~~~ 206 (433)
++.+ +..++++||+|++++|+|+++...++..| .+++.++ .+++..++.+ +++ . +++
T Consensus 81 a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 148 (371)
T 2e7j_A 81 AKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAG------------LNIALVPKTDYPDYAITPENFAQTIEETKKRGEV 148 (371)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTT------------CEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcC------------CeEEEeecccCCCCCcCHHHHHHHHHhhcccCCe
Confidence 9997 57778999999999999999998888888 4788888 6543332222 221 1 578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
++|++++|+||||.+++ +++|.++|++||++||+||+|+.+.. +.++..++ ..++++|+||+++ ++.|+
T Consensus 149 ~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~---~~~~~~~~----~di~~~s~sK~~~-~~~~~ 217 (371)
T 2e7j_A 149 VLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM---PVSLKEIG----ADFIVGSGHKSMA-ASGPI 217 (371)
T ss_dssp EEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB---CCCHHHHT----CSEEEEEHHHHSS-CCSSC
T ss_pred EEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCC---CCChhhcC----CCEEEecCCcCCC-CCCCc
Confidence 89999999999999999 68999999999999999999997533 22333332 2389999999997 55699
Q ss_pred eeeeccccccccCCcchhHHHHHHHh--hc-----cCCCcHHHHHHHHHhcCcCChhHHHHHHHHH--HHHHHHHHHHHh
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVC--TC-----FNGASNISQAGGLACLSPEGFKAVHEVIGFY--KENTDIIVETFN 357 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~l~ 357 (433)
||++++++++... +..... .. ....+...+.++.++++.. . ++..+++ +++++++.+.|+
T Consensus 218 G~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~--~~~~~~~~~~~~~~~l~~~L~ 286 (371)
T 2e7j_A 218 GVMGMKEEWAEIV-------LRRSEKYKNKEVELLGCTARGATIITLMASFPHV--R--ERIKRWDEEVEKARRFAAEME 286 (371)
T ss_dssp EEEEECTTTTTTT-------TCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH--H--HHGGGHHHHHHHHHHHHHHHH
T ss_pred EEEEEechhhhhh-------ccccccCcccccccccCCcCHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999998875210 111111 01 2234445454444444311 1 1556677 888899999998
Q ss_pred hcCCeeecCC--CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCC----CCCCeEE-Eeec---cChhHHHHHHHH
Q 045431 358 SLGFKVYGGK--NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGP----GGEGFIR-VSAF---GHRGNVLEACKR 427 (433)
Q Consensus 358 ~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~----~~~~~iR-i~~~---~~~~~l~~~l~~ 427 (433)
++|+.+..+. .+.++|++++ +..++...+. ++||.+.| ..|.. ..++++| +++. .+++++++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~ 362 (371)
T 2e7j_A 287 KLGIKQLGDNPHNHDLMFFHAE--VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNA 362 (371)
T ss_dssp HTTCEEESSSSCCSSEEEEECH--HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHH
T ss_pred HcCcEEecCCCccCceEEEECC--CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHH
Confidence 8888887654 4778999987 4455655555 66999988 43322 1257899 9975 689999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|++++
T Consensus 363 l~~~~ 367 (371)
T 2e7j_A 363 FKEII 367 (371)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 98
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.1e-32 Score=266.02 Aligned_cols=337 Identities=9% Similarity=0.061 Sum_probs=235.4
Q ss_pred CCCceEEecCCCCCCC---ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDTTEP---IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++..++|++.+.+..+ .++.+.+++.+.+.+... ....| +.....++++.+++++ + ++++++++|+++
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~~gt~ 104 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTL--TSRAF-HSDQLGPWYEKVAKLT----N--KEMVLPMNTGAE 104 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EETTHHHHHHHHHHHH----T--CSEEEEESSHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccc--ccccc-CCHHHHHHHHHHHHhc----C--CCEEEEeCcHHH
Confidence 4567899988765433 589999999998875421 11122 3445677888887776 4 689999999999
Q ss_pred HHHH-HHHhcCC----------CCEEEEeCCCChhhhhhHHHhCCc-ccccccccccceEEEeecCccCCcccCCCCCCC
Q 045431 138 DISR-LQIVFGS----------NVTMAVQDPSYPAYVDSSVIMGQT-GEFQKDAEKYGKIEYMRCTAENGFFPDLSTVAR 205 (433)
Q Consensus 138 al~~-l~~l~~~----------gd~Vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (433)
++.+ +..+..+ +|+|++++|+|++.......++.. ............+..++.++...+...+ .++
T Consensus 105 a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~ 182 (392)
T 3ruy_A 105 AVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI--TPN 182 (392)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHC--CTT
T ss_pred HHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHh--ccC
Confidence 9987 4444433 679999999998876665555432 1111111112234444443111111111 268
Q ss_pred ccEEEEcCCCCccccCCCHHH-HHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc-
Q 045431 206 TDIIFFCSPNNPTGAAATREQ-LTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG- 283 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~-~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G- 283 (433)
+++|++++|+||||.+++.++ +++|.++|++||+++|+||+|+++.+.+.+....... ...++ .||||.++ +|
T Consensus 183 ~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~d~---~~~SK~l~-gG~ 257 (392)
T 3ruy_A 183 TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDN-VTPDM---YILGKALG-GGV 257 (392)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGT-CCCSE---EEECGGGG-TTT
T ss_pred eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccC-CCCCE---EEEchhhh-CCh
Confidence 999999999999999996555 9999999999999999999998776665443332222 22223 37899986 67
Q ss_pred cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC---
Q 045431 284 VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG--- 360 (433)
Q Consensus 284 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--- 360 (433)
+|+||++++++++ +.+.........+.+.+++.++.++++... . ++.+++++++++++.+.|++++
T Consensus 258 ~~~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~-~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (392)
T 3ruy_A 258 FPISCAAANRDIL--------GVFEPGSHGSTFGGNPLACAVSIAALEVLE--E-EKLTERSLQLGEKLVGQLKEIDNPM 326 (392)
T ss_dssp SCCEEEEECHHHH--------TTCCTTSSCCSSTTCHHHHHHHHHHHHHHH--H-TTHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred hhhEEEEECHHHH--------hhhccCCcCCCCCCCHHHHHHHHHHHHHHH--h-hhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999998775 333333344456678999998888887321 1 6678889999999999999874
Q ss_pred CeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 361 FKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
+....+ .|.++++.++. +..++...+. ++||.+.||. .+++|++ +..+++++++++++|+++++
T Consensus 327 ~~~~~~-~g~~~~~~~~~-~~~~l~~~l~-~~gi~v~~~~------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 392 (392)
T 3ruy_A 327 ITEVRG-KGLFIGIELNE-PARPYCEQLK-AAGLLCKETH------ENVIRIAPPLVISEEDLEWAFQKIKAVLS 392 (392)
T ss_dssp EEEEEE-ETTEEEEEESS-CSHHHHHHHH-TTTEECCCBT------TTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ceEEEe-eeeEEEEEEcc-hHHHHHHHHH-HCCcEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 333443 46677777776 5667777766 5699999864 5799999 46789999999999999874
No 99
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=3.7e-32 Score=262.02 Aligned_cols=333 Identities=14% Similarity=0.103 Sum_probs=234.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCC--CCCCC-CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGY--SGYGA-EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~Y~~-~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+.+.|+.+.+. +.|+.+.+++.+.+......... ..|.. ..+..++|+++++++ ++++++|++|+|+++++.
T Consensus 16 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~ 90 (390)
T 1elu_A 16 NKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----NVDPNTITITDNVTTGCD 90 (390)
T ss_dssp TSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----TSCGGGEEEESSHHHHHH
T ss_pred CeEEecCCccC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc----CCCHHHEEEeCChHHHHH
Confidence 47889888753 67788999999988653210111 13532 367899999999997 788889999999999999
Q ss_pred H-HHHh-cCCCCEEEEeCCCChhhhhh----HHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEE
Q 045431 141 R-LQIV-FGSNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDII 209 (433)
Q Consensus 141 ~-l~~l-~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i 209 (433)
+ +..+ +++||+|++++|+|+++... .+..| .+++.++.+.+.++..+ +++ .+++++|
T Consensus 91 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v 158 (390)
T 1elu_A 91 IVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFG------------ITYRFFPVAATLNQGDAAAVLANHLGPKTRLV 158 (390)
T ss_dssp HHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHC------------CEEEEECCGGGSSSSCHHHHHHTTCCTTEEEE
T ss_pred HHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhC------------cEEEEEcCCCCCCccchHHHHHHhcCCCceEE
Confidence 7 5666 78999999999999997654 34556 47778887532222222 222 2578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHH----HcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAK----DNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~----~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
++++|+||||.+++ +++|.++|+ +||+++|+|++|+... .+..+.. .+..++++|+||++. +|.+
T Consensus 159 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~---~~~~~~~----~~~d~~~~s~~K~~~-~~~g 227 (390)
T 1elu_A 159 ILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGS---LPLDFSR----LEVDYYAFTGHKWFA-GPAG 227 (390)
T ss_dssp EEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTT---BCCCTTT----SCCSEEEEESSSTTC-CCTT
T ss_pred EEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCC---cCCChhh----cCCCEEEcccccccc-CCCc
Confidence 99999999999999 788999999 9999999999998421 1222211 234588999999553 6778
Q ss_pred eeeeeccccccccCCcchhHHHH---------------HHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHH
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFN---------------RIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENT 349 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~ 349 (433)
+||++++++++..-.+... .+. ........+.+.+.+.++.++++.... .+++++++++++++
T Consensus 228 ~G~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~ 306 (390)
T 1elu_A 228 VGGLYIHGDCLGEINPTYV-GWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRS 306 (390)
T ss_dssp CEEEEECTTTGGGCCCCSC-CTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred eEEEEECHHhHhhcCCccc-cCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999887522111000 000 001112234566666655555442111 24688899999999
Q ss_pred HHHHHHHhhc-CCeeecC--CCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHH
Q 045431 350 DIIVETFNSL-GFKVYGG--KNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLE 423 (433)
Q Consensus 350 ~~l~~~l~~~-g~~~~~~--~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~ 423 (433)
+.+.+.|+++ |+.+..| ..+.+++++++ +.+..++...+. ++||.+.+|. +++++||++ +.+++++++
T Consensus 307 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~-----~~~~iRis~~~~~~~~~i~~ 380 (390)
T 1elu_A 307 EFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLE-EQRIYLRTIA-----DPDCIRACCHYITDEEEINH 380 (390)
T ss_dssp HHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHH-HTTEECEEET-----TTTEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHH-HCCEEEEecC-----CCCeEEEecccCCCHHHHHH
Confidence 9999999998 8887743 34556666886 456667777775 5599999875 357999996 468999999
Q ss_pred HHHHHHHh
Q 045431 424 ACKRFKHL 431 (433)
Q Consensus 424 ~l~~l~~~ 431 (433)
++++|+++
T Consensus 381 ~~~~l~~~ 388 (390)
T 1elu_A 381 LLARLADF 388 (390)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhh
Confidence 99999865
No 100
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=7.4e-32 Score=261.44 Aligned_cols=338 Identities=12% Similarity=0.084 Sum_probs=233.8
Q ss_pred CCCCceEEecCC---CCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIG---DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...+|++.+ .+--..++.+.+++.+++.+.. .....| +.....++++.+++++ + .++|++|+|++
T Consensus 36 ~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~--~~~~~~-~~~~~~~l~~~la~~~----~--~~~v~~~~gg~ 106 (406)
T 4adb_A 36 QQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFW--HTGNGY-TNEPVLRLAKKLIDAT----F--ADRVFFCNSGA 106 (406)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS--CCCTTS-CCHHHHHHHHHHHHHS----S--CSEEEEESSHH
T ss_pred CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcc--cccCCc-CCHHHHHHHHHHHhhC----C--CCeEEEeCcHH
Confidence 456678999887 3322358899999999886532 111233 3334556666666654 4 45999999999
Q ss_pred HHHHH-HHHhcC-------CC-CEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCCcccCCCCCCCc
Q 045431 137 CDISR-LQIVFG-------SN-VTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENGFFPDLSTVART 206 (433)
Q Consensus 137 ~al~~-l~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (433)
+++.+ +..++. +| |.|++++|+|+++.......+...++. .......++..++.++...+...+ .+++
T Consensus 107 ~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~ 184 (406)
T 4adb_A 107 EANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALI--DDST 184 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTC--STTE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHh--cCCe
Confidence 99997 455543 55 999999999999876666666533311 111111244445543211111111 2578
Q ss_pred cEEEEcCCCCccccCC--CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccc
Q 045431 207 DIIFFCSPNNPTGAAA--TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~--~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~ 284 (433)
++|+++ |+||||.++ +.+++++|+++|++||++||+||+|+++.+.+.+.+....+. ..+++ ||||.++ +|+
T Consensus 185 ~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~---t~sK~~~-~G~ 258 (406)
T 4adb_A 185 CAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDLL---TTAKALG-GGF 258 (406)
T ss_dssp EEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEE---EECGGGG-TTS
T ss_pred EEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC-CCCEE---Eechhhc-CCC
Confidence 888877 999999988 999999999999999999999999998766655443333322 22333 7899998 999
Q ss_pred ceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC----
Q 045431 285 RLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG---- 360 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---- 360 (433)
|+||++++++++ +.+.........+.+.+.|.++.++++.... ++..++++++++++.+.|++.+
T Consensus 259 r~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~ 327 (406)
T 4adb_A 259 PVGALLATEECA--------RVMTVGTHGTTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYG 327 (406)
T ss_dssp CCEEEEECHHHH--------HTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEcHHHH--------hhhccCCcCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999998875 3333333444566889999988888763222 5677788888888888887752
Q ss_pred CeeecCCCccEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 361 FKVYGGKNAPYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.....+..|.++|+.++.. ...++...+.++ ||.+.|+. ++++|++ +..+++++++++++|++++
T Consensus 328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~------~~~iRi~~~~~~~~e~i~~~~~~l~~~l 397 (406)
T 4adb_A 328 LFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKA-GVMVLIAG------GNVVRFAPALNVSEEEVTTGLDRFAAAC 397 (406)
T ss_dssp CEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHT-TEECEESS------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHC-CcEEeecC------CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 1111123578899998753 466777777665 99999853 5799996 5678999999999999875
No 101
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=1e-31 Score=258.18 Aligned_cols=331 Identities=13% Similarity=0.049 Sum_probs=230.5
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
|+.+.+. ++|+.+.+++.+.+..... .....|.. ..+..++++.+++++ ++++++|++|+|+++++.+ +
T Consensus 4 ld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~~~~ 77 (382)
T 4eb5_A 4 FDYTSAK-PVDERILEAMLPYMTESFG-NPSSVHSYGFKAREAVQEAREKVAKLV----NGGGGTVVFTSGATEANNLAI 77 (382)
T ss_dssp CBTTTCC-CCCHHHHHHHHHHHHTSCC-CTTCSSHHHHHHHHHHHHHHHHHHHHH----TCTTEEEEEESSHHHHHHHHH
T ss_pred eccCCCC-CCCHHHHHHHHHHHHhccC-CCCCCcHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEcCchHHHHHHHH
Confidence 4444433 6889999999998864211 11112421 235678888888887 7788899999999999997 5
Q ss_pred HHhc----CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCC
Q 045431 143 QIVF----GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPN 215 (433)
Q Consensus 143 ~~l~----~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~ 215 (433)
..+. ++||+|++++|+|+++...+..+...| .+++.++.+.++.++.+ +++ .+++++|++++|+
T Consensus 78 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~ 148 (382)
T 4eb5_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG---------FEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHAN 148 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTT---------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBC
T ss_pred HHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCC---------cEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccC
Confidence 6666 899999999999999877776543222 37888888654322222 221 2478899889999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
||||.+++ +++|.++|++||++ |+|++|+.. ..+.++... +.+++++|+||++|++| +||++++++.
T Consensus 149 nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~g---~~~~~~~~~----~~di~~~s~sK~~g~~g--~G~~~~~~~~ 215 (382)
T 4eb5_A 149 NEIGTIQP---VEEISEVLAGKAAL-HIDATASVG---QIEVDVEKI----GADMLTISSNDIYGPKG--VGALWIRKEA 215 (382)
T ss_dssp TTTCBBCC---HHHHHHHHTTSSEE-EEECTTTBT---TBCCCHHHH----TCSEEEEETGGGTCCSS--CEEEEEETTC
T ss_pred CCccccCC---HHHHHHHHHHCCCE-EEEcchhcC---CcccCcccc----CCCEEEeehHHhcCCCc--eEEEEEcccc
Confidence 99999999 68899999999999 999999831 112233222 23588999999987556 7999988774
Q ss_pred -cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCC---cc
Q 045431 296 -LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKN---AP 370 (433)
Q Consensus 296 -~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~ 370 (433)
+.... ..............+...+.++.++++.. .+++++++++++++++.+.+.|+++ |+.+..+.+ +.
T Consensus 216 ~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 290 (382)
T 4eb5_A 216 KLQPVI----LGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPN 290 (382)
T ss_dssp CCCCSS----CSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTT
T ss_pred ccCcee----cCCCccccccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCC
Confidence 21100 00000011122334555555555555421 1356888899999999999999987 887766542 56
Q ss_pred EEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC-----------------CCCeEEEeec--cChhHHHHHHHHHHHh
Q 045431 371 YVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-----------------GEGFIRVSAF--GHRGNVLEACKRFKHL 431 (433)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~~--~~~~~l~~~l~~l~~~ 431 (433)
++|+.+++.+..++...+.+ +||.+.+|..|... +++++||++. .+++++++++++|+++
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 291 NVNVRFSYIEGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp EEEEEETTSCHHHHHHHHHH-HTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcCHHHHHHHHHH-CCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78888886666777777654 59999999865432 2579999975 5899999999999887
Q ss_pred h
Q 045431 432 Y 432 (433)
Q Consensus 432 l 432 (433)
+
T Consensus 370 ~ 370 (382)
T 4eb5_A 370 I 370 (382)
T ss_dssp H
T ss_pred H
Confidence 5
No 102
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=1.5e-32 Score=265.53 Aligned_cols=337 Identities=12% Similarity=0.123 Sum_probs=227.8
Q ss_pred CCCceEEecCC---CCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIG---DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+||+.+ .+--..++.+.+++.+++..... ....| +.....++++.+++++ + +++|++|+|+++
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~gg~~ 108 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH--CSNLF-WNRPQMELAELLSKNT----F--GGKVFFANTGTE 108 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC--CCTTS-EEHHHHHHHHHHHHTT----T--SCEEEEESSHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhccc--Ccccc-CCHHHHHHHHHHHHhc----C--CCeEEEeCCHHH
Confidence 45568999877 33223678999999998875421 11123 2233455555555553 4 589999999999
Q ss_pred HHHH-HHHhcC------C-CCEEEEeCCCChhhhh-hHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccE
Q 045431 138 DISR-LQIVFG------S-NVTMAVQDPSYPAYVD-SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI 208 (433)
Q Consensus 138 al~~-l~~l~~------~-gd~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (433)
++.+ +..+.. + ++.|++.+|+|++... .+...|...+...+......+..++.++...+...+ .+++++
T Consensus 109 a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l--~~~~~~ 186 (397)
T 2ord_A 109 ANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKM--SEDVCA 186 (397)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCHHHHHHHC--CTTEEE
T ss_pred HHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCHHHHHHHh--hcCeEE
Confidence 9987 444432 5 4789999999976544 666666432110011111125555543211111111 257899
Q ss_pred EEEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 209 IFFCSPNNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 209 i~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
|++++||||||. +++.+++++|+++|++||+++|+||+|+++.+.+.+.++..++...| ++ ||||.++ +|+|+|
T Consensus 187 v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d-~~---s~sK~~~-~G~r~G 261 (397)
T 2ord_A 187 VFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPD-VL---TTAKGLG-GGVPIG 261 (397)
T ss_dssp EEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS-EE---EECGGGG-TTSCCE
T ss_pred EEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCC-ee---eeccccC-CCcCeE
Confidence 999999999999 99999999999999999999999999998766554443333332233 22 8899998 999999
Q ss_pred eeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeee-
Q 045431 288 WTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVY- 364 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~- 364 (433)
|++++++++ . .. ..........+.+.|.++.++++.... ++++++++++++.+.+.|++. ++...
T Consensus 262 ~~~~~~~~~-~-l~-------~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 329 (397)
T 2ord_A 262 AVIVNERAN-V-LE-------PGDHGTTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVA 329 (397)
T ss_dssp EEEECSTTC-C-CC-------TTSSCCSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred EEEEchHhc-c-cC-------CCCcCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 999998863 2 11 111223445788899888887763221 456778888888888888775 33321
Q ss_pred -cCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 365 -GGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 -~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+..|.++|++++. .+..++...+.+ +||.+.||. ++++||+ +..+++++++++++|++++
T Consensus 330 ~~~~~g~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~------~~~iRis~~~~~~~e~i~~~~~~l~~~l 394 (397)
T 2ord_A 330 DVRGMGLMIGIQFREEVSNREVATKCFE-NKLLVVPAG------NNTIRFLPPLTVEYGEIDLAVETLKKVL 394 (397)
T ss_dssp EEEEETTEEEEEECTTSCHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEeEEEEEEECChHHHHHHHHHHHH-CCCEEccCC------CCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 12357889999874 346677777766 599999872 5789999 4569999999999999875
No 103
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.6e-31 Score=256.51 Aligned_cols=324 Identities=12% Similarity=0.025 Sum_probs=229.2
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCC------
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGS------ 148 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~------ 148 (433)
++++.+.+++.+.+... ...|....+..++++++++++.+.+++++++|++|+|+++++.+ +..++.+
T Consensus 41 ~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~ 115 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETN-----LGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRR 115 (397)
T ss_dssp CCCTHHHHHHHHHTTCC-----TTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhc-----CCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhh
Confidence 45678888888877532 11221112556777777777766668889999999999999987 5666555
Q ss_pred -------CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCc
Q 045431 149 -------NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNP 217 (433)
Q Consensus 149 -------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nP 217 (433)
||+|++++|+|+++...++..| .+++.++.+.+..++.+ +++ .+ +++++++++|+||
T Consensus 116 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 183 (397)
T 3f9t_A 116 KGLSKNEHPKIIVPITAHFSFEKGREMMD------------LEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTE 183 (397)
T ss_dssp TTCCCCSSCEEEEETTCCTHHHHHHHHHT------------CEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTT
T ss_pred hcccCCCCeEEEECCcchhHHHHHHHHcC------------ceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCC
Confidence 9999999999999999999998 47888888754322222 221 23 7899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC--c------ccccCCCCcceEEEecccccccccccceeee
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPR--S------IFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~--~------~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
||.+.+ +++|.++|++||+++|+||+|+.+....... . ...+. . +..+++.|++|+++ +|+|+|++
T Consensus 184 tG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~K~~~-~~~~~g~~ 257 (397)
T 3f9t_A 184 LGTIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS-L-GVDSITIDPHKMGH-CPIPSGGI 257 (397)
T ss_dssp TCCBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG-G-TCSEEECCTTTTTC-CCSSCEEE
T ss_pred CCCCCC---HHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccccc-c-cCCeEEEccccccC-CCCCceEE
Confidence 999988 7889999999999999999998754321110 0 11111 1 34588999999885 88899999
Q ss_pred eccccccccCCcchhHHHHHH----HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 290 VIPKELLFSDGFPVAKDFNRI----VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
+++++.+.+........+... ...+..+.+.+++.++.+.+. ..++++..++++++++.+.+.|+++|+.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 334 (397)
T 3f9t_A 258 LFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG---REGQRKIVNECMENTLYLYKKLKENNFKPVI 334 (397)
T ss_dssp EESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred EEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEc
Confidence 988776421110000000000 001112235666776666653 2456778888889999999999998888766
Q ss_pred CCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhhC
Q 045431 366 GKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l~ 433 (433)
+..+.++|+.++. ..++...+.++ ||.+.+|.. ++++||++. .+++++++++++|+++++
T Consensus 335 ~~~~~~~~~~~~~--~~~~~~~l~~~-gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 335 EPILNIVAIEDED--YKEVCKKLRDR-GIYVSVCNC-----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CCSSSEEEEECTT--HHHHHHHHHHT-TCBCEECSS-----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCCccEEEEEeCC--HHHHHHHHHhC-CeEEeccCC-----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 6678888998874 55666666655 999998753 479999975 589999999999998864
No 104
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=5.4e-32 Score=261.48 Aligned_cols=317 Identities=14% Similarity=0.133 Sum_probs=228.8
Q ss_pred CCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC-C-CCCHHHHHHHHHHHhccCCCCCC-cEEEcCChHHHHHH-HHHhc
Q 045431 71 GDTTEPIPEVITSALAKRSYALSTQEGYSGYGA-E-QGEKPLRAAIASTFYKDLGIEEG-DIFVSDGAKCDISR-LQIVF 146 (433)
Q Consensus 71 g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~-~-~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~~~al~~-l~~l~ 146 (433)
+.++.++++.+.+++.+.+. ..|.+ . ....++|+++++++ +.+++ +|++|+|+++++.+ +..++
T Consensus 23 ~~~p~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~al~~~~~~~~ 90 (396)
T 2ch1_A 23 GPGPSNCSKRVLTAMTNTVL--------SNFHAELFRTMDEVKDGLRYIF----QTENRATMCVSGSAHAGMEAMLSNLL 90 (396)
T ss_dssp SSSSCCCCHHHHHHTTSCCC--------CTTCHHHHHHHHHHHHHHHHHH----TCCCSCEEEESSCHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHhccccc--------cCCChhHHHHHHHHHHHHHHHh----CCCCCcEEEECCcHHHHHHHHHHHhc
Confidence 34445677887777665332 12433 1 23789999999998 77777 89999999999997 57778
Q ss_pred CCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCcccc
Q 045431 147 GSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGA 220 (433)
Q Consensus 147 ~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~ 220 (433)
++||+|++++|+|+++. ..++..| .+++.++.+.+...+.+ +++ .+ ++++|++++|+||||.
T Consensus 91 ~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~ 158 (396)
T 2ch1_A 91 EEGDRVLIAVNGIWAERAVEMSERYG------------ADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGL 158 (396)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred CCCCeEEEEcCCcccHHHHHHHHHcC------------CceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCce
Confidence 99999999999999984 3566677 47888887643222221 221 13 6899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCC
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDG 300 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~ 300 (433)
+++ +++|.++|++||++||+||+|+. . ..+.++..+ +..+++.|++|+++ ++.++|+++++++++
T Consensus 159 ~~~---~~~i~~l~~~~~~~li~Dea~~~-g--~~~~~~~~~----~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~---- 223 (396)
T 2ch1_A 159 LQP---LEGVGQICHQHDCLLIVDAVASL-C--GVPFYMDKW----EIDAVYTGAQKVLG-APPGITPISISPKAL---- 223 (396)
T ss_dssp ECC---CTTHHHHHHHTTCEEEEECTTTB-T--TBCCCTTTT----TCCEEECCCC-CCC-CCSSCEEEEECHHHH----
T ss_pred ecC---HHHHHHHHHHcCCEEEEEccccc-c--CCccchhhc----CcCEEEEcCCcccc-CCCCeEEEEECHHHH----
Confidence 999 78899999999999999999983 2 112222222 12367789999875 555679999988764
Q ss_pred cchhHHHHH-----------------HH------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHh
Q 045431 301 FPVAKDFNR-----------------IV------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 301 ~~~~~~~~~-----------------~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 357 (433)
+.+.. .. .....+.+...|.++.++++.....++++.+++++++++++.+.|+
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (396)
T 2ch1_A 224 ----DVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLG 299 (396)
T ss_dssp ----HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22211 00 1122346777888777777642224578889999999999999999
Q ss_pred hcCCeeecCCC----ccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-c--cChhHHHHHHHHHH
Q 045431 358 SLGFKVYGGKN----APYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-F--GHRGNVLEACKRFK 429 (433)
Q Consensus 358 ~~g~~~~~~~~----g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~--~~~~~l~~~l~~l~ 429 (433)
++|+.+..+.+ +.++|+.++ +.+..++...|++++||.+.+|..+. .++++||++ . .+++++++++++|+
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~e~i~~~~~~l~ 377 (396)
T 2ch1_A 300 KMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT--FGKAWRVGIMGECSTVQKIQFYLYGFK 377 (396)
T ss_dssp HHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred HCCCeeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc--CCCEEEEECCCCcCCHHHHHHHHHHHH
Confidence 88888776543 248899987 55677788887766799999987532 457899997 3 37899999999999
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 378 ~~l 380 (396)
T 2ch1_A 378 ESL 380 (396)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 105
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=9.6e-32 Score=259.40 Aligned_cols=322 Identities=8% Similarity=0.027 Sum_probs=226.9
Q ss_pred EEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHH
Q 045431 66 ISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQI 144 (433)
Q Consensus 66 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~ 144 (433)
+.|..+.+ .+.|+.+.+++.+.+.. ...|....+..++|+.+++++ ++++++|++|+|+++++.+ +..
T Consensus 10 ~yl~~~~~-~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 10 VITLTAGP-VNAYPEVLRGLGRTVLY------DYDPAFQLLYEKVVDKAQKAM----RLSNKPVILHGEPVLGLEAAAAS 78 (392)
T ss_dssp SEECSSSC-CCCCHHHHHHTTSCCCC------TTSHHHHHHHHHHHHHHHHHT----TCSSCCEEESSCTHHHHHHHHHH
T ss_pred ceeecCCC-cCCCHHHHHHHhccccc------cccHHHHHHHHHHHHHHHHHh----CCCCCEEEEeCCchHHHHHHHHH
Confidence 44555443 46788888887765431 111222345678899999987 7778999999999999997 567
Q ss_pred hcCCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC----CCCccEEEEcCCCCc
Q 045431 145 VFGSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST----VARTDIIFFCSPNNP 217 (433)
Q Consensus 145 l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~l~~p~nP 217 (433)
++++||+|++++|+|+++. ..++..| .+++.++.+.++.++.+ +++ .+++++|++++|+||
T Consensus 79 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~np 146 (392)
T 2z9v_A 79 LISPDDVVLNLASGVYGKGFGYWAKRYS------------PHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTP 146 (392)
T ss_dssp HCCTTCCEEEEESSHHHHHHHHHHHHHC------------SCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGG
T ss_pred hcCCCCEEEEecCCcccHHHHHHHHHcC------------CceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCC
Confidence 7899999999999998763 3334456 47778887654322222 221 257899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc
Q 045431 218 TGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF 297 (433)
Q Consensus 218 tG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~ 297 (433)
||.+++ +++|.++|++||++||+|++|+... .+.++... +..++++|+||+++ ++.++||++++++++
T Consensus 147 tG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~----~~d~~~~s~sK~~~-~~~g~G~l~~~~~~~- 214 (392)
T 2z9v_A 147 SGTINP---IDAIGALVSAHGAYLIVDAVSSFGG---MKTHPEDC----KADIYVTGPNKCLG-APPGLTMMGVSERAW- 214 (392)
T ss_dssp GTEECC---HHHHHHHHHHTTCEEEEECTTTBTT---BSCCGGGG----TCSEEEECSSSTTC-CCSCCEEEEECHHHH-
T ss_pred Cceecc---HHHHHHHHHHcCCeEEEEcccccCC---cccccccc----cceEEEecCccccc-CCCceeEEEECHHHH-
Confidence 999998 7899999999999999999998321 12223222 23588999999664 333469999998874
Q ss_pred cCCcchhHHHHHHH--------------------hhccCCCcHHHHHHHHHhcCcCChhH-HHHHHHHHHHHHHHHHHHH
Q 045431 298 SDGFPVAKDFNRIV--------------------CTCFNGASNISQAGGLACLSPEGFKA-VHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 298 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l 356 (433)
+.+.... .......+...+.++.++++.. ..+ +++++++++++++++.+.|
T Consensus 215 -------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 215 -------AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLY-LNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp -------HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHH
Confidence 3332110 1112234555555555555421 122 6788899999999999999
Q ss_pred hhcCCeeecCC----CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee---ccChhHHHHHHHHH
Q 045431 357 NSLGFKVYGGK----NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA---FGHRGNVLEACKRF 428 (433)
Q Consensus 357 ~~~g~~~~~~~----~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~---~~~~~~l~~~l~~l 428 (433)
+++|+.+..|. .+.++|+.++ +.+..++...|.+++||.+.+|..+. .++++||++ +.+++++++++++|
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l 364 (392)
T 2z9v_A 287 TAMGLSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGET--LGKLTRIGHMGPTAQPIYAIAALTAL 364 (392)
T ss_dssp HHTTCCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred HHcCCeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCC--CCCeEEEeCcccccCHHHHHHHHHHH
Confidence 88888776533 4678899997 55667777777665699999987542 367999995 36899999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
++++
T Consensus 365 ~~~~ 368 (392)
T 2z9v_A 365 GGAM 368 (392)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 106
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.98 E-value=4e-32 Score=261.11 Aligned_cols=314 Identities=10% Similarity=0.095 Sum_probs=223.2
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC--CcEEEcCChHHHHHHHHHhcCCCCE
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE--GDIFVSDGAKCDISRLQIVFGSNVT 151 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~--~~i~~~~G~~~al~~l~~l~~~gd~ 151 (433)
+.++++.+.+++.+.+.. ...+.......++++.+++++ ++++ ++|++|+|+++++.++..++++||+
T Consensus 10 p~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~~~~~la~~~----~~~~~~~~v~~~~g~t~al~~~~~~~~~gd~ 79 (384)
T 3zrp_A 10 PTTIKEDVLVAGLENNVG------FTSKEFVEALAYSLKGLRYVM----GASKNYQPLIIPGGGTSAMESVTSLLKPNDK 79 (384)
T ss_dssp CSCCCHHHHHHTTCCSCC------TTSHHHHHHHHHHHHHHHHHH----TCCTTSEEEEEESCHHHHHHHGGGGCCTTCE
T ss_pred CCCCCHHHHHHhhccccc------cccHHHHHHHHHHHHHHHHHh----CCCCCCcEEEEcCCcHHHHHHHHhhcCCCCE
Confidence 356788888777664421 111111335567777777776 7776 8999999999999944677899999
Q ss_pred EEEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCccccCCCHH
Q 045431 152 MAVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGAAATRE 225 (433)
Q Consensus 152 Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~~~~~~ 225 (433)
|++++|+|++ +...++..| .+++.++.+.++.++.+ +++ .+ ++++|++++|+||||.+++
T Consensus 80 vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-- 145 (384)
T 3zrp_A 80 ILVVSNGVFGDRWEQIFKRYP------------VNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP-- 145 (384)
T ss_dssp EEEECSSHHHHHHHHHHTTSS------------CEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC--
T ss_pred EEEecCCcchHHHHHHHHHcC------------CcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc--
Confidence 9999999976 344444555 47888888754322222 221 12 6899999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhH
Q 045431 226 QLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAK 305 (433)
Q Consensus 226 ~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 305 (433)
+++|.++|++||+++|+|++|+.... +.++.. .+..+++.|+||+++ ++.++||++++++++ +
T Consensus 146 -l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~--------~ 208 (384)
T 3zrp_A 146 -VKDVINKIRKYVELIVVDGVSSVGAE---EVKAEE----WNVDVYLTASQKALG-SAAGLGLLLLSPKAL--------S 208 (384)
T ss_dssp -HHHHHHHHGGGEEEEEEECTTTTTTS---CCCTTT----TTCSEEEEETTSTTC-CCSSEEEEEECHHHH--------H
T ss_pred -HHHHHHHHHhcCCEEEEECcccccCc---cccccc----cCCCEEEecCccccc-CCCceEEEEECHHHH--------H
Confidence 78899999999999999999884321 222221 134589999999885 445699999998875 2
Q ss_pred HH-------------HHHHh---------hcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCe
Q 045431 306 DF-------------NRIVC---------TCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFK 362 (433)
Q Consensus 306 ~~-------------~~~~~---------~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 362 (433)
.+ ..... ... .+.+...+.++.+++......++++++++++++++.+.+.|+++|+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 288 (384)
T 3zrp_A 209 ILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLE 288 (384)
T ss_dssp HHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 22 11111 011 13455555555455542222336888999999999999999998888
Q ss_pred eecCC----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 363 VYGGK----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 363 ~~~~~----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+..+. .+.++|+.+++.+..++...+.++ ||.+.+|..+.. +++||++. .+++++++++++|++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~l 360 (384)
T 3zrp_A 289 IVARRPESYSNTVTGVILKVADPQKVLAGTVNE-GVEFAPGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERTL 360 (384)
T ss_dssp BSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTT-TCCCEECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred EccCcccccCccEEEEECCCCCHHHHHHHHHHC-CEEEecCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 77665 577889999876667777777655 999999875332 89999964 58999999999999875
No 107
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.98 E-value=1.5e-31 Score=261.26 Aligned_cols=353 Identities=12% Similarity=0.040 Sum_probs=212.2
Q ss_pred CCCCceEEecCC--CCCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIG--DTTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g--~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...+|++.+ ...+. .++.+.+++.+++.+.. .|....+..++++++++++.+..+.++++|++|+|++
T Consensus 26 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ 99 (430)
T 3i4j_A 26 DAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP------FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGS 99 (430)
T ss_dssp TTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC------CCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHH
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcc------cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHH
Confidence 345678999876 33333 48999999999887531 2333345667777777777765577788999999999
Q ss_pred HHHHH-HHHhc--------CCCCEEEEeCCCChhhhhhHHHhCCccccc-ccccccc--eEEEeecCccC---Ccc-cCC
Q 045431 137 CDISR-LQIVF--------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYG--KIEYMRCTAEN---GFF-PDL 200 (433)
Q Consensus 137 ~al~~-l~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~--~~~~~~~~~~~---~~~-~~~ 200 (433)
+++.. +..++ .+++.|++.+|+|+++......++....+. ....... .+..++.+... ... .++
T Consensus 100 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (430)
T 3i4j_A 100 EATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGL 179 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHH
Confidence 99987 44444 457899999999998876555444321110 0000000 22233332110 000 112
Q ss_pred CC-----CCCccEEEEcCC-CC-cccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEE
Q 045431 201 ST-----VARTDIIFFCSP-NN-PTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIET 272 (433)
Q Consensus 201 ~~-----~~~~~~i~l~~p-~n-PtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i 272 (433)
++ .++..++++++| +| ++|. +++.+++++|.++|++||+++|+||+|.++...+.......+++.... +
T Consensus 180 e~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~d---i 256 (430)
T 3i4j_A 180 RALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPD---I 256 (430)
T ss_dssp HHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCS---E
T ss_pred HHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCc---E
Confidence 21 113344555666 56 8886 668889999999999999999999999988766544333333122222 3
Q ss_pred ecccccccccc-cceeeeeccccccccCCcchhHHHHHH----HhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHH
Q 045431 273 SSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI----VCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYK 346 (433)
Q Consensus 273 ~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~ 346 (433)
.+|||+++ +| +|+||++++++++ +.+... ....+.+.++++|.++.++|+.... ..+++.++..+
T Consensus 257 ~t~sK~l~-~G~~r~G~~~~~~~i~--------~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 327 (430)
T 3i4j_A 257 AVLGKGLA-AGYAPLAGLLAAPQVY--------ETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGA 327 (430)
T ss_dssp EEECGGGT-TTSSCCEEEEECHHHH--------HHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEEccccc-CCccccEEEEECHHHH--------HHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 37999998 79 9999999998885 555542 3345566899999999988873211 22344444444
Q ss_pred HHHHHHHHHHhhc-CCeeecCCCccEEEEECCCC----------ChHHHHHHHHHcCCeEecCCCC-CCCCCCCeEEEee
Q 045431 347 ENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGR----------SSWDVFSEILEKTHVVTTPGSG-FGPGGEGFIRVSA 414 (433)
Q Consensus 347 ~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~-f~~~~~~~iRi~~ 414 (433)
..++.+.+.+.++ ++....+ .|+|+|+.+... ...++...+++ +||.+.|+.. +...+.+++||++
T Consensus 328 ~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~~~~iRi~~ 405 (430)
T 3i4j_A 328 QLLAGLQALQARFPQMMQVRG-TGLLLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITYPGSGAEPNGRGDHLLLGP 405 (430)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-ETTEEEEEEC------------CHHHHHHHHHH-TTEECC-----------CEEEECC
T ss_pred HHHHHHHHHHHhCCCeEEEEE-EEEEEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEEecccccCCCCCCEEEEEC
Confidence 4444444444444 3444443 577888887521 12456666664 5999999843 2233467899996
Q ss_pred c--cChhHHHHHHHHHHHhh
Q 045431 415 F--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 415 ~--~~~~~l~~~l~~l~~~l 432 (433)
. .+++++++++++|++++
T Consensus 406 ~~~~t~e~i~~~l~~l~~~l 425 (430)
T 3i4j_A 406 PLSITAAEVDGLLALLAGAL 425 (430)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 4 68999999999999876
No 108
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.98 E-value=2e-31 Score=253.83 Aligned_cols=327 Identities=10% Similarity=0.068 Sum_probs=229.8
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+.+|+|+.+.+. ++++.+.+++.+.+. .|....|..++++++++++.+.+++++++|++|+|+++++.+
T Consensus 13 p~~i~l~~~~~~-~~~~~v~~a~~~~~~---------~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~ 82 (359)
T 1svv_A 13 PKPYSFVNDYSV-GMHPKILDLMARDNM---------TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIA 82 (359)
T ss_dssp --CEECSCSCSS-CCCHHHHHHHHHHTT---------CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHH
T ss_pred CeeEEecCCCcC-CCCHHHHHHHHHHHh---------hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHH
Confidence 458999997766 788999999998764 254556778899999998887557888999999999999997
Q ss_pred HHHhcCCCCEEEEeCCCChhhhh--hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-------CccEE
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVD--SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-------RTDII 209 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-------~~~~i 209 (433)
+..++++||+|++++|+|+++.. .++..| .+++.++.+ +..++.+ +++ .+ ++++|
T Consensus 83 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 83 CSLALRPWEAVIATQLGHISTHETGAIEATG------------HKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp HHHHCCTTEEEEEETTSHHHHSSTTHHHHTT------------CCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred HHHHhCCCCEEEEcccchHHHHHHHHHhcCC------------CeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 57778999999999999999887 366777 477778765 2222211 221 12 38899
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++++| ||||.+++.+++++|+++|++||+++|+||+|..+.....+.....+.-.....++..|++|..+ ...+|++
T Consensus 150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~--~~~~g~l 226 (359)
T 1svv_A 150 YISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG--MFGEALI 226 (359)
T ss_dssp EEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC--SSCEEEE
T ss_pred EEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC--CCceEEE
Confidence 99998 79999999999999999999999999999999554322111111110000011277889999743 3457999
Q ss_pred eccccccccCCcchhHHHHHHHh-hcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVC-TCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK 367 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 367 (433)
+++++++ +.+..... ... ...+.....++.+++++ ..+++.+++++++++++.+.|+..|+.+..+.
T Consensus 227 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 295 (359)
T 1svv_A 227 ILNDALK--------PNARHLIKQRGALMAKGWLLGIQFEVLMKD---NLFFELGAHSNKMAAILKAGLEACGIRLAWPS 295 (359)
T ss_dssp ECSGGGC--------TTHHHHHHHTTCCCTTTHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC
T ss_pred EEcccHH--------HHHHHHHhcCCcccccchhhHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHhccCCeEEccCC
Confidence 9988875 33443221 111 11122222223445553 23577888999999999999954588888777
Q ss_pred CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 368 NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
+++++|++++ .++...+++++||.+.+.. +.+++++||++ ..+++++++++++|+++++
T Consensus 296 ~~~~~~~~~~----~~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 296 ASNQLFPILE----NTMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKRLVA 356 (359)
T ss_dssp SSSEECBEEE----HHHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred ccceEEEEcC----HHHHHHHHHhcCEEEEecc---cCCCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence 8999999875 4666676655599982210 23457899985 4689999999999998763
No 109
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.98 E-value=2.3e-31 Score=255.55 Aligned_cols=332 Identities=12% Similarity=0.046 Sum_probs=222.1
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
|+.+.. .++|+.+.+++.+.+.+... .....|.. .....++++.+++++ ++++++|++|+|+++++.+ +
T Consensus 4 ld~~~~-~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~i~~~~g~~~a~~~~~ 77 (382)
T 4hvk_A 4 FDYTSA-KPVDERILEAMLPYMTESFG-NPSSVHSYGFKAREAVQEAREKVAKLV----NGGGGTVVFTSGATEANNLAI 77 (382)
T ss_dssp CBTTTC-CCCCHHHHHHHHHHHHTSCC-CTTCSSHHHHHHHHHHHHHHHHHHHHT----TCTTEEEEEESSHHHHHHHHH
T ss_pred ecCCCc-CCCCHHHHHHHHHHHHhhcC-CCcccchHHHHHHHHHHHHHHHHHHHc----CCCcCeEEEECCchHHHHHHH
Confidence 444433 36788999999998864211 01111211 112235666666665 8888999999999999997 5
Q ss_pred HHhc----CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCC
Q 045431 143 QIVF----GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPN 215 (433)
Q Consensus 143 ~~l~----~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~ 215 (433)
..++ ++||+|++++|+|+++...+..+...+ .+++.++.+.++.++.+ +++ .+++++|++++||
T Consensus 78 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~ 148 (382)
T 4hvk_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG---------FEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHAN 148 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTT---------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBC
T ss_pred HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcC---------CEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCC
Confidence 6666 999999999999999887766652222 47888888754333222 221 3578899999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
||||.+++ +++|.++|++||+ +|+|++|+.... +.++... +..+++.|+||++|.+| +|+++++++.
T Consensus 149 nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~~~~---~~~~~~~----~~d~~~~s~~K~~g~~g--~g~~~~~~~~ 215 (382)
T 4hvk_A 149 NEIGTIQP---VEEISEVLAGKAA-LHIDATASVGQI---EVDVEKI----GADMLTISSNDIYGPKG--VGALWIRKEA 215 (382)
T ss_dssp TTTCBBCC---HHHHHHHHSSSSE-EEEECTTTBTTB---CCCHHHH----TCSEEEEESGGGTSCTT--CEEEEEETTC
T ss_pred CCceeeCC---HHHHHHHHHHcCE-EEEEhHHhcCCC---CCCchhc----CCCEEEEeHHHhcCCCc--eEEEEEcCcc
Confidence 99999999 6789999999999 999999874211 2222222 23589999999887556 7888777654
Q ss_pred cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCC---ccE
Q 045431 296 LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKN---APY 371 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~~ 371 (433)
..... ...............+...+.++.+++. ...+++++.+++++++++.+.+.|+++ |+.+..+.. +.+
T Consensus 216 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 291 (382)
T 4hvk_A 216 KLQPV---ILGGGQENGLRSGSENVPSIVGFGKAAE-ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNN 291 (382)
T ss_dssp CCCCS---SCSSCTGGGTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTE
T ss_pred CcCcc---cccCCCcCccccCCcCHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCE
Confidence 21000 0000000111223345566665555554 122567889999999999999999987 787765543 357
Q ss_pred EEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCC-----------------CCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 372 VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGG-----------------EGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~-----------------~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+++.+++.+..++...+.+ +||.+.+|..|.... ++++||++. .+++++++++++|++++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~ 370 (382)
T 4hvk_A 292 VNVRFSYIEGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVI 370 (382)
T ss_dssp EEEEETTCCHHHHHHHHHH-TTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHH-CCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 7788877677777766654 599999998876543 589999974 47899999999998875
No 110
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.98 E-value=4.2e-32 Score=264.90 Aligned_cols=343 Identities=9% Similarity=0.053 Sum_probs=228.5
Q ss_pred CCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...|||+.+.+ ++. +++.+.+++.+++.+.. .....|.+..+..+|+++|++++. +..+++|++|+|+++
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~---~~~~~~v~~~~g~~~ 113 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS--HTCFQVLAYEPYLELCEIMNQKVP---GDFAKKTLLVTTGSE 113 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCS--CCCTTTEECHHHHHHHHHHHHHSS---CSSCEEEEEESSHHH
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCC---cccccEEEEeCchHH
Confidence 4567899987763 332 67889999999886532 112256677899999999999972 213489999999999
Q ss_pred HHHH-HH---HhcCCCCEEEEeCCCChhhhh-hHHHhCCcccc-cccccccceEEEeecCcc--C-C--ccc-CCCC---
Q 045431 138 DISR-LQ---IVFGSNVTMAVQDPSYPAYVD-SSVIMGQTGEF-QKDAEKYGKIEYMRCTAE--N-G--FFP-DLST--- 202 (433)
Q Consensus 138 al~~-l~---~l~~~gd~Vl~~~p~~~~~~~-~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~--~-~--~~~-~~~~--- 202 (433)
++.+ +. .++++| .|++.+|+|+++.. .....|....+ ...+.....++.++.+.+ + . ++. ++++
T Consensus 114 a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~ 192 (426)
T 1sff_A 114 AVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK 192 (426)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHH
Confidence 9997 44 456776 89999999988654 55555532100 001111113555665421 1 1 111 1221
Q ss_pred C----CCccEEEEc-CCCCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc
Q 045431 203 V----ARTDIIFFC-SPNNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 203 ~----~~~~~i~l~-~p~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s 276 (433)
. +++++|+++ +|+| || .+++.+++++|.++|++||++||+||+|+++.+.+....+.... ..+.+.|||
T Consensus 193 ~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~----~~~di~s~s 267 (426)
T 1sff_A 193 NDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG----VAPDLTTFA 267 (426)
T ss_dssp HTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT----SCCSEEEEC
T ss_pred hccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcC----CCCCEEEEc
Confidence 1 356676664 5678 99 88899999999999999999999999999876655332222221 123345999
Q ss_pred ccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|+++ +|+|+||++++++++ +.+.......+...++++|.++.++++.... +...++++++++.+.+.|
T Consensus 268 K~~~-~GlriG~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l 335 (426)
T 1sff_A 268 KSIA-GGFPLAGVTGRAEVM--------DAVAPGGLGGTYAGNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGL 335 (426)
T ss_dssp GGGG-TSSCCEEEEEEHHHH--------TTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHH
T ss_pred cccc-CCCceEEEEEcHHHH--------hhhccCCcCcCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 9998 599999999998875 2222222234455788999888877652111 134455666666666666
Q ss_pred hhc----C-CeeecCCCccEEEEECCC---------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhH
Q 045431 357 NSL----G-FKVYGGKNAPYVWVQFPG---------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGN 420 (433)
Q Consensus 357 ~~~----g-~~~~~~~~g~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~ 420 (433)
+++ . +....+ .|+++|++++. .+..++...+++ +||.+.||..| ++++||++ ..++++
T Consensus 336 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~----~~~iRi~~~~~~~~~~ 409 (426)
T 1sff_A 336 LAIAEKHPEIGDVRG-LGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YNVLRILVPLTIEDAQ 409 (426)
T ss_dssp HHHHHTCTTEEEEEE-ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SCEEEECCCTTCCHHH
T ss_pred HHHHHhCCCeEEEEE-EEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC----CCEEEEECCccCCHHH
Confidence 553 2 223334 48899999842 124456666665 59999998753 47899996 568999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 410 i~~~~~~l~~~l 421 (426)
T 1sff_A 410 IRQGLEIISQCF 421 (426)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 111
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.98 E-value=6.5e-31 Score=254.82 Aligned_cols=327 Identities=14% Similarity=0.154 Sum_probs=232.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC----CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG----AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
+.+.|+.+.+. ++|+.+.+++.+.+..... .....|. ...+..++++++++++ ++++++|++|+|+++++
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGA-STVGAHPSARRSAAVLDAAREAVADLV----NADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCS-SSCSSSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCChHHHH
Confidence 47888888776 7788999999998875321 1112232 2346788999999998 77888999999999999
Q ss_pred HHH-HHh---cCCCCEEEEeCCCChhhhhhHHH----hCCcccccccccccceEEEeecCccCCcccCCCC-----CCCc
Q 045431 140 SRL-QIV---FGSNVTMAVQDPSYPAYVDSSVI----MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VART 206 (433)
Q Consensus 140 ~~l-~~l---~~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 206 (433)
.++ ..+ +++||+|++++|+|+++...+.. .| .+++.++.+++++ ..+++. .+++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~v~~v~~~~~~~-~~d~~~l~~~l~~~~ 166 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYG------------AKVKWAEVDIETG-ELPTWQWESLISKST 166 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHB------------CEEEEECCCTTTC-CCCGGGHHHHCCTTE
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcC------------CeEEEEecCcccC-CcCHHHHHHHhCCCc
Confidence 974 556 78999999999999987766654 46 4788888763222 222222 3578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
++|++++|+||||.+++ +++|.++|+++|+++|+|++|+... .+.++..+ +..+++.|+||++| ++ +
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~----~~d~~~~s~~K~~g-~~--~ 233 (406)
T 3cai_A 167 RLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPY---RLLDIRET----DADVVTVNAHAWGG-PP--I 233 (406)
T ss_dssp EEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTT---CCCCHHHH----CCSEEEEEGGGGTS-CS--C
T ss_pred eEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCC---CCCCchhc----CCCEEEeehhhhcC-CC--c
Confidence 99999999999999998 7889999999999999999998421 12233333 23588999999886 55 8
Q ss_pred e-eeeccccccccCCcchhHHHHHHH---------hhccCCCcHHHHHHHHHhcC---cCC----------h-hHHHHHH
Q 045431 287 G-WTVIPKELLFSDGFPVAKDFNRIV---------CTCFNGASNISQAGGLACLS---PEG----------F-KAVHEVI 342 (433)
Q Consensus 287 G-~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~q~~~~~~l~---~~~----------~-~~~~~~~ 342 (433)
| |++++++++. .+.... .......+.+.+.++.++++ ..+ + .++++++
T Consensus 234 G~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~ 305 (406)
T 3cai_A 234 GAMVFRDPSVMN--------SFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSAD 305 (406)
T ss_dssp EEEEESCHHHHH--------TSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH
T ss_pred CeEEEEehHHHh--------hcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Confidence 9 9999987742 111110 01122345555444333332 222 0 1578889
Q ss_pred HHHHHHHHHHHHHHhhc-CCeeecCC--CccEEEEECCCCChHHHHHHHHHcCCeEecCCC------CCCCC-CCCeEEE
Q 045431 343 GFYKENTDIIVETFNSL-GFKVYGGK--NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGS------GFGPG-GEGFIRV 412 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~------~f~~~-~~~~iRi 412 (433)
++++++++++.+.|+++ |+.+..+. .+.++++.+++.+..++...+. ++||.+.+|. .|+.. +.+++||
T Consensus 306 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gi~v~~g~~~~~~~~~g~~~~~~~iRi 384 (406)
T 3cai_A 306 AYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLA-DNGILAIANTGSRVLDVLGVNDVGGAVTV 384 (406)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHH-HTTEECEECCSCHHHHHHTTTTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHH-HCCcEEecCChHHHHHHcCCCCCCCeEEE
Confidence 99999999999999987 78776553 2447888888656667777765 4699999987 33322 3578999
Q ss_pred eecc--ChhHHHHHHHHHHHh
Q 045431 413 SAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 413 ~~~~--~~~~l~~~l~~l~~~ 431 (433)
++.. +++++++++++|+++
T Consensus 385 s~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 385 GLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp ECCTTCCHHHHHHHHHHHHTC
T ss_pred EeecCCCHHHHHHHHHHHHHh
Confidence 9754 799999999999864
No 112
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.98 E-value=1.9e-31 Score=257.43 Aligned_cols=321 Identities=11% Similarity=0.143 Sum_probs=228.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC--CCCCCHHHHHHHHHHHhccCCCCCC-cEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG--AEQGEKPLRAAIASTFYKDLGIEEG-DIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~~~al~ 140 (433)
..+.+..|. .++|+.+.+++.+.+.. .|. ...+..++++.+++++ +++++ +|++|+|+++++.
T Consensus 19 ~~~~~~~g~--~~~~~~v~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~ 84 (393)
T 2huf_A 19 NKLLMGPGP--SNAPQRVLDAMSRPILG--------HLHPETLKIMDDIKEGVRYLF----QTNNIATFCLSASGHGGME 84 (393)
T ss_dssp CCEECSSSC--CCCCHHHHHHTTSCCCC--------TTSHHHHHHHHHHHHHHHHHH----TCCCSEEEEESSCHHHHHH
T ss_pred CeEEecCCC--CCCCHHHHHHHHhhhcc--------CCCHHHHHHHHHHHHHHHHHh----CCCCCcEEEEcCcHHHHHH
Confidence 457776663 56788888887765431 122 2356788899999887 77765 8999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcC
Q 045431 141 R-LQIVFGSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCS 213 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~ 213 (433)
+ +..++++||+|++++|+|+++. ..++..| .+++.++.+.++.++.+ +++ .+ ++++|++++
T Consensus 85 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 152 (393)
T 2huf_A 85 ATLCNLLEDGDVILIGHTGHWGDRSADMATRYG------------ADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQ 152 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHhCCCCEEEEECCCcchHHHHHHHHHcC------------CeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEc
Confidence 7 5777899999999999998853 2334456 47788887653222221 221 23 789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccc-cccccceeeeecc
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYA-GFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~-~~~G~r~G~l~~~ 292 (433)
|+||||.+++ +++|.++|++||+++|+|++++.. ..+..+.. .+..+++.|+||++ |++|+ ||++++
T Consensus 153 ~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~~---~~~~~~~~----~~~d~~~~s~sK~l~g~~G~--G~~~~~ 220 (393)
T 2huf_A 153 GDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASLG---GAPMFMDR----WEIDAMYTGSQKVLGAPPGI--TPVSFS 220 (393)
T ss_dssp EETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBT---TBCCCTTT----TTCSEEECCSSSTTCCCSSC--EEEEEC
T ss_pred cCCCccccCC---HHHHHHHHHHcCCEEEEEcccccC---CCCcchhh----cCccEEEECCCcccccCCCe--EEEEEC
Confidence 9999999999 789999999999999999998732 11222221 23568899999975 45675 999998
Q ss_pred ccccccCCcchhHHHHHHH-----------------------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 293 KELLFSDGFPVAKDFNRIV-----------------------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
++++ +.+.... .......+...+.++.++++......+++.++++++++
T Consensus 221 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 292 (393)
T 2huf_A 221 HRAV--------ERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCA 292 (393)
T ss_dssp HHHH--------HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHH--------HHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 8774 3333210 00112345566665555554221123678888999999
Q ss_pred HHHHHHHhhcCCeeecCC---CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-c--cChhHHH
Q 045431 350 DIIVETFNSLGFKVYGGK---NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-F--GHRGNVL 422 (433)
Q Consensus 350 ~~l~~~l~~~g~~~~~~~---~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~--~~~~~l~ 422 (433)
+++.+.|+++|+.+..+. .+.++|+.++ +.+..++...|++++||.+.+|..|. .++++||++ . .++++++
T Consensus 293 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~--~~~~~Ri~~~~~~~~~e~i~ 370 (393)
T 2huf_A 293 KRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT--AGQVFRIGLMGQNATTERVD 370 (393)
T ss_dssp HHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCSHHHHH
T ss_pred HHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc--cCCEEEEEcccCcCCHHHHH
Confidence 999999998888776653 3558889987 55677777777766799999988653 357999998 5 3688899
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
+++++|++++
T Consensus 371 ~~~~~l~~~~ 380 (393)
T 2huf_A 371 RVLQVFQEAV 380 (393)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 113
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.97 E-value=1.8e-30 Score=247.09 Aligned_cols=320 Identities=11% Similarity=0.094 Sum_probs=221.7
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
+.+|+|+.+.+ .++++.+.+++.+.+. .....|++.....++++.+++++ + ++++|++|+|+++++.+
T Consensus 7 ~~~id~~~~~~-~~~~~~v~~a~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~----g-~~~~v~~~~~gt~a~~~a 75 (356)
T 1v72_A 7 PPALGFSSDNI-AGASPEVAQALVKHSS-----GQAGPYGTDELTAQVKRKFCEIF----E-RDVEVFLVPTGTAANALC 75 (356)
T ss_dssp CCCCBCSCGGG-CCCCHHHHHHHHHTTS-----SCCCSTTCSHHHHHHHHHHHHHH----T-SCCEEEEESCHHHHHHHH
T ss_pred CceEeeccCCc-cCCCHHHHHHHHhhcc-----CcccccccchHHHHHHHHHHHHh----C-CCCcEEEeCCccHHHHHH
Confidence 46899998754 4678889999888652 11245654444556666666665 5 44569999999999987
Q ss_pred HHHhcCCCCEEEEeCCCChhhhhh--HHHh--CCcccccccccccceEEEeecCccCCcccC-CCC---C-------CCc
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVDS--SVIM--GQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---V-------ART 206 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~~--~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~-------~~~ 206 (433)
+..++++||.|++++|+|...... +... | .+++.++.+. ..++.+ +++ . +++
T Consensus 76 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 76 LSAMTPPWGNIYCHPASHINNDECGAPEFFSNG------------AKLMTVDGPA-AKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTS------------CEEEECCCGG-GCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred HHHhcCCCCEEEEcCccchhhhhchHHHHHhCC------------cEEEEecCCC-CeEcHHHHHHHhhhcchhhccCCc
Confidence 566778999999999999887766 6666 7 3677777642 222111 211 1 157
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc--cCCCCCcccccCCCCcceEEEeccccccccccc
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI--SDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~--~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~ 284 (433)
++|++++||| ||.+++.+++++|+++|++||++||+|++|..+. +.+.......++...+ +++.|+||+ +.
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~-g~--- 215 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVD--ALSFGATKN-GV--- 215 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCC--EEEECCGGG-TC---
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCC--EEEEecccC-CC---
Confidence 8999999987 9999999999999999999999999999998542 1222111211111122 445689998 42
Q ss_pred cee--eeeccccccccCCcchhHHHHHHHhhcc--CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 285 RLG--WTVIPKELLFSDGFPVAKDFNRIVCTCF--NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 285 r~G--~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
|+| |++++++++ +.+........ ...+...+.++...+++. ...+..++++++++++.+.|+++
T Consensus 216 ~~G~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~~ 284 (356)
T 1v72_A 216 LAAEAIVLFNTSLA--------TEMSYRRKRAGHLSSKMRFLSAQIDAYLTDD---LWLRNARKANAAAQRLAQGLEGLG 284 (356)
T ss_dssp SSCEEEEESSGGGH--------HHHHHHHHHTTCCCSSTHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cCccEEEEECHHHH--------hhHHHHhhccCchhhhHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHhhCC
Confidence 455 888888774 44443322211 112334444455666532 23455677888999999999986
Q ss_pred CCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 360 GFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 360 g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
|+.+..+.+++++|++++ .++...+. ++||.+.||. |+ ++++|+++ ..+++++++++++|+++++
T Consensus 285 g~~~~~~~~~~~~~~~~~----~~~~~~l~-~~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 285 GVEVLGGTEANILFCRLD----SAMIDALL-KAGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp TEEEESCCCSSEEEEEEC----HHHHHHHH-HTTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred CcEEccCCCccEEEEEcC----HHHHHHHH-hcCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 888877778899999986 26666665 4599999987 54 67999995 3589999999999998763
No 114
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.97 E-value=6.6e-31 Score=250.89 Aligned_cols=328 Identities=12% Similarity=0.083 Sum_probs=229.6
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCC--CCCcEEEcCChHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGI--EEGDIFVSDGAKCDIS 140 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~--~~~~i~~~~G~~~al~ 140 (433)
+++|+.| | .+.|+.+.+++.+.+. +.|+. ..+..++|+++++++ +. ++++|++|+|+++++.
T Consensus 5 ~~~~~~g-p-~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~~~g~t~a~~ 70 (366)
T 1m32_A 5 YLLLTPG-P-LTTSRTVKEAMLFDSC--------TWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAVE 70 (366)
T ss_dssp CEECSSS-S-CCCCHHHHHTTCCCCC--------TTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHHH
T ss_pred cccccCC-C-cCCCHHHHHHHhhhhc--------CCCHHHHHHHHHHHHHHHHHHh----CCCCcCcEEEEecChHHHHH
Confidence 6889988 3 4678888888776321 12211 168899999999998 42 2358999999999999
Q ss_pred H-HHHhcCCCCEEEEeC-CCChh-hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC----CCCccEEEEc
Q 045431 141 R-LQIVFGSNVTMAVQD-PSYPA-YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST----VARTDIIFFC 212 (433)
Q Consensus 141 ~-l~~l~~~gd~Vl~~~-p~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~l~ 212 (433)
+ +..++++||+|++.+ ++|+. +...+...| .+++.++.+.+...+.+ +++ ..++++|+++
T Consensus 71 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~ 138 (366)
T 1m32_A 71 AVLGSALGPQDKVLIVSNGAYGARMVEMAGLMG------------IAHHAYDCGEVARPDVQAIDAILNADPTISHIAMV 138 (366)
T ss_dssp HHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHT------------CCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEe
Confidence 7 577789999988776 55654 556667777 46777777643222222 221 1357889999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 213 SPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 213 ~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
+|+||||.+++ +++|.++|++||++||+||+|+.... +.++.. .+..++++|+||+++ ++.++||++++
T Consensus 139 ~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~~----~~~di~~~s~~K~~~-~~~g~G~~~~~ 207 (366)
T 1m32_A 139 HSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGI---PMDIAA----LHIDYLISSANKCIQ-GVPGFAFVIAR 207 (366)
T ss_dssp SEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTT----TTCSEEEEESSSTTC-CCSSEEEEEEE
T ss_pred cccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCc---Cccccc----cCccEEEecCccccc-CCCceEEEEEC
Confidence 99999999999 78999999999999999999984322 222221 134589999999874 34457999999
Q ss_pred ccccccCCcc-------hhHHHHHHHh---hccCCCcHHHHHHHHHhcCcCChhH-HHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 293 KELLFSDGFP-------VAKDFNRIVC---TCFNGASNISQAGGLACLSPEGFKA-VHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 293 ~~~~~~~~~~-------~~~~~~~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
++++..-... ....+..... ......+.+.+.++.++++...... +++++++++++++++.+.|+++|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~ 287 (366)
T 1m32_A 208 EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGF 287 (366)
T ss_dssp HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 8875321110 0001111101 0123466777766666665321111 577889999999999999998887
Q ss_pred eeecC---CCccEEEEECC---CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhhC
Q 045431 362 KVYGG---KNAPYVWVQFP---GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 362 ~~~~~---~~g~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l~ 433 (433)
.+..+ ..++++|+.++ +.+..++...+.++ ||.+.+|..| ..+++|+++. .+++++++++++|+++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 288 NTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQ-GFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp CBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHT-TEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred eeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHC-CEEEECCcCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 77654 35679999997 44666777777655 9999999876 3579999975 479999999999998763
No 115
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.97 E-value=6.9e-31 Score=256.03 Aligned_cols=342 Identities=13% Similarity=0.084 Sum_probs=230.3
Q ss_pred CCCCceEEecCCCCCCCChHHHHHHHHHHHh--hcccCCCC--C--CCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 60 YPDAEVISLGIGDTTEPIPEVITSALAKRSY--ALSTQEGY--S--GYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~--~~~~~~~~--~--~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
.+++++|.|+.+.+. ++|+.+.+++.+.+. ........ . .|.......++++.+++++ ++++++|++|+
T Consensus 18 ~~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~~~~v~~~~ 92 (423)
T 3lvm_A 18 RAMKLPIYLDYSATT-PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV----GADPREIVFTS 92 (423)
T ss_dssp --CCSSEECBTTTCC-CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEES
T ss_pred cccCCCEeecCCCcC-CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHc----CCCCCeEEEeC
Confidence 445678999888775 788999999888765 21100000 0 1111223467777777776 78889999999
Q ss_pred ChHHHHHH-HHHhc----CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCC
Q 045431 134 GAKCDISR-LQIVF----GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VAR 205 (433)
Q Consensus 134 G~~~al~~-l~~l~----~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 205 (433)
|+++++.+ +..++ ++||+|++++|+|+++...+..++..+ .+++.++.+.+..++.+ +++ .++
T Consensus 93 ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREG---------FEVTYLAPQRNGIIDLKELEAAMRDD 163 (423)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTT---------CEEEEECCCTTSCCCHHHHHHHCCTT
T ss_pred ChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcC---------CEEEEeccCCCCccCHHHHHHhcCCC
Confidence 99999997 45555 389999999999999887775551111 47888888754332222 221 357
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 206 TDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 206 ~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+++|++++|+||||.+++ +++|+++|++||++||+||+|+.... +..+... +..+++.|+||.+|.+|
T Consensus 164 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~~~----~~di~~~s~sK~~g~~g-- 231 (423)
T 3lvm_A 164 TILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---PIDLSQL----KVDLMSFSGHKIYGPKG-- 231 (423)
T ss_dssp EEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTTS----CCSEEEEESTTTTSCSS--
T ss_pred cEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC---CcChhhc----CCCEEEechHHhcCCCC--
Confidence 889999999999999999 78899999999999999999874211 2222222 34588999999887556
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeee
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVY 364 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 364 (433)
+||++++++.+..-.+ ................+...+.++.+++.. ...++++.+++++++++.+.+.|+++ |+.+.
T Consensus 232 ~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 309 (423)
T 3lvm_A 232 IGALYVRRKPRVRIEA-QMHGGGHERGMRSGTLPVHQIVGMGEAYRI-AKEEMATEMERLRGLRNRLWNGIKDIEEVYLN 309 (423)
T ss_dssp CEEEEECBTTBCCCCC-SSCSSCTTTTTCCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred eEEEEEeccccCCCCc-cccCCcccccccCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 8999999877522100 000000000112233456666655555542 12346888999999999999999988 88887
Q ss_pred cCCC---ccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCC-----------------CCeEEEeec--cChhHHH
Q 045431 365 GGKN---APYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGG-----------------EGFIRVSAF--GHRGNVL 422 (433)
Q Consensus 365 ~~~~---g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~-----------------~~~iRi~~~--~~~~~l~ 422 (433)
.+.. +.++++.+++.+..++...+ .+ |.+.+|..|.+.. .+++||++. .++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~ 386 (423)
T 3lvm_A 310 GDLEHGAPNILNVSFNYVEGESLIMAL-KD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID 386 (423)
T ss_dssp SCSTTBCTTEEEEEETTSCHHHHHHHT-TT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH
T ss_pred CCccccCCCeEEEEeCCCCHHHHHHHH-hh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHH
Confidence 6543 35666777766666666554 33 9999998775421 478999974 4789999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
+++++|++++
T Consensus 387 ~~~~~l~~~~ 396 (423)
T 3lvm_A 387 YTIELVRKSI 396 (423)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 116
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.97 E-value=8.8e-31 Score=254.23 Aligned_cols=314 Identities=12% Similarity=0.113 Sum_probs=223.5
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCc-EEEcCChHHHHHH-HHHhcCCC
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGD-IFVSDGAKCDISR-LQIVFGSN 149 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~-i~~~~G~~~al~~-l~~l~~~g 149 (433)
+.++++.+.+++.+.+ ...|.+ .....++++.+++++ +.+.++ |++++|+++++.+ +..++++|
T Consensus 21 p~~~~~~v~~a~~~~~--------~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~sgt~al~~~~~~~~~~g 88 (411)
T 3nnk_A 21 PINADPRVLRAMSSQL--------IGQYDPAMTHYMNEVMALYRGVF----RTENRWTMLVDGTSRAGIEAILVSAIRPG 88 (411)
T ss_dssp CCCCCHHHHHHHTSCC--------CCTTCHHHHHHHHHHHHHHHHHH----TCCCSEEEEEESCHHHHHHHHHHHHCCTT
T ss_pred CCCCCHHHHHHhhccc--------cccccHHHHHHHHHHHHHHHHHh----CCCCCcEEEECCCcHHHHHHHHHHhcCCC
Confidence 3567888887776532 112211 122355666666665 676665 7888999999987 67788999
Q ss_pred CEEEEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C-CCccEEEEcCCCCccccCCC
Q 045431 150 VTMAVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V-ARTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 150 d~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~i~l~~p~nPtG~~~~ 223 (433)
|+|++++|+|++ +...++..| .+++.++.+.+..++.+ +++ . .++++|++++||||||.+++
T Consensus 89 d~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~ 156 (411)
T 3nnk_A 89 DKVLVPVFGRFGHLLCEIARRCR------------AEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP 156 (411)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred CEEEEecCCchHHHHHHHHHHcC------------CeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc
Confidence 999999999987 777777788 47888887644332222 221 1 27899999999999999998
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
+++|.++|++||+++|+|++++.... +..+.. .+..+++.|+||+++ ++.++||++++++++
T Consensus 157 ---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~~----~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~------- 218 (411)
T 3nnk_A 157 ---LAELGEICRRYDALFYTDATASLGGN---PLETDV----WGLDAVSAGMQKCLG-GPSGTSPITLSARME------- 218 (411)
T ss_dssp ---CTTHHHHHHHHTCEEEEECTTTBTTB---CCCTTT----TTCSEEECCSTTTTC-CCSSEEEEEECHHHH-------
T ss_pred ---HHHHHHHHHHcCCEEEEECCcccCCc---ccchhc----cCCcEEEecCccccC-CCCceEEEEECHHHH-------
Confidence 77899999999999999999874211 222211 234589999999864 555699999998874
Q ss_pred hHHHHHHH------------------------------------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045431 304 AKDFNRIV------------------------------------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347 (433)
Q Consensus 304 ~~~~~~~~------------------------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 347 (433)
+.+.... .....+.+...+.++.++++......+++.++++++
T Consensus 219 -~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~ 297 (411)
T 3nnk_A 219 -EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKL 297 (411)
T ss_dssp -HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred -HHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333211 011233466666665565542222236888999999
Q ss_pred HHHHHHHHHhhcCCeeecCCC---ccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-c--cChhH
Q 045431 348 NTDIIVETFNSLGFKVYGGKN---APYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-F--GHRGN 420 (433)
Q Consensus 348 ~~~~l~~~l~~~g~~~~~~~~---g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~--~~~~~ 420 (433)
+++++.+.|++.|+.+..+.+ +.++|+.++ +.+..++...+++++||.+.+|.. ....+++||++ . .++++
T Consensus 298 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~--~~~~~~iRi~~~~~~~~~~~ 375 (411)
T 3nnk_A 298 HGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFG--PLHGKVWRIGTMGYNARKDC 375 (411)
T ss_dssp HHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCG--GGTTTEEEEECCGGGCSHHH
T ss_pred HHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccC--CCCCCEEEEeCccCcCCHHH
Confidence 999999999998888765543 678999997 566777888877777999998843 33467999997 3 37899
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 376 i~~~~~~l~~~l 387 (411)
T 3nnk_A 376 VMTTLSALEAVL 387 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 117
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.97 E-value=2.7e-31 Score=256.92 Aligned_cols=340 Identities=14% Similarity=0.058 Sum_probs=213.8
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC----CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA----EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
+..|.|+.+.+. ++|+.+.+++.+.+.+... .....|.. .....++++.+++++ ++++++|++|+|++++
T Consensus 19 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~~~~v~~~~g~t~a 92 (400)
T 3vax_A 19 SHMTYLDAAATT-RVDQRVADIVLHWMTAEFG-NAGSRHEYGIRAKRGVERAREYLASTV----SAEPDELIFTSGATES 92 (400)
T ss_dssp ---CCCCCCCCS-SSCHHHHHHHHHHHHHHHS-CSSCHHHHHHHHHHHHHHHHHHHHHHT----TCCGGGEEEESCHHHH
T ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHHhccC-CCcccchhHHHHHHHHHHHHHHHHHHc----CCCCCcEEEeCCHHHH
Confidence 356777777654 6789999999998864321 11111211 122455666666665 8888999999999999
Q ss_pred HHH-HHHhc----CCCC-EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEE
Q 045431 139 ISR-LQIVF----GSNV-TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDII 209 (433)
Q Consensus 139 l~~-l~~l~----~~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i 209 (433)
+.+ +..++ ++|| .|++++++|+++...+..+...+ .+++.++.+.+..++.+ +++ .+++++|
T Consensus 93 l~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v 163 (400)
T 3vax_A 93 NNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRG---------FEVDFLTPGPSGRISVEGVMERLRPDTLLV 163 (400)
T ss_dssp HHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTT---------CEEEEECCCTTCCCCHHHHHTTCCTTEEEE
T ss_pred HHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcC---------CeEEEEccCCCCCcCHHHHHHhcCCCceEE
Confidence 997 56666 8999 99999999999877776653222 37888888654333222 222 3578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
++++||||||.+++ +++|.++|++||++||+|++|+.... +.++... ..+++.|+||.+|.+| +|++
T Consensus 164 ~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~---~~~~~~~-----~d~~~~s~~K~~g~~g--~g~~ 230 (400)
T 3vax_A 164 SLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGKV---PGDLTTP-----IDMISISGHKIGAPKG--VGAL 230 (400)
T ss_dssp ECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTTS---GGGGGSC-----CSEEEEETGGGTSCSS--CEEE
T ss_pred EEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCC---CcChhhc-----CcEEEEeHHHhCCCCc--eEEE
Confidence 99999999999999 68899999999999999999984211 2222211 3488999999776545 6777
Q ss_pred e-ccccccc---cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 290 V-IPKELLF---SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 290 ~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
+ ++++.+. .....................+...+.++.++++. ..+++++.+++++++++++.+.|+..|+.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 309 (400)
T 3vax_A 231 VTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI-FEAEHAQWQVAAQDLRSRLLAGLASTSFQVNG 309 (400)
T ss_dssp EECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHTTTTCEECS
T ss_pred EEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 7 7762110 00000000000001122333556666655555542 12356888999999999999999933888876
Q ss_pred CCC---ccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCC-------------C----CCeEEEee-c--cChhHHH
Q 045431 366 GKN---APYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPG-------------G----EGFIRVSA-F--GHRGNVL 422 (433)
Q Consensus 366 ~~~---g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-------------~----~~~iRi~~-~--~~~~~l~ 422 (433)
+.. +.++++.+++.+..++...+. +||.+.+|..|... . .+++||++ . .++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~ 387 (400)
T 3vax_A 310 DQDHVVPHILNLSFEDVDAEAFLVTLK--DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVE 387 (400)
T ss_dssp CTTSBCTTEEEEECTTCCHHHHHHHHH--HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------
T ss_pred CcccCCCCEEEEEeCCCCHHHHHHHHh--cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHH
Confidence 554 467888888767777777766 59999998766431 1 48999998 4 4789999
Q ss_pred HHHHHHHHhhC
Q 045431 423 EACKRFKHLYK 433 (433)
Q Consensus 423 ~~l~~l~~~l~ 433 (433)
+++++|+++++
T Consensus 388 ~~~~~l~~~~~ 398 (400)
T 3vax_A 388 ELARGVAKLKP 398 (400)
T ss_dssp -----------
T ss_pred HHHHHHHHHhc
Confidence 99999988763
No 118
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.97 E-value=2.9e-31 Score=256.42 Aligned_cols=341 Identities=10% Similarity=0.074 Sum_probs=225.8
Q ss_pred CCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++..++|++.+. .++. .|+.+.+++.+.+..... ....| +.....++++.+++++ ++++++|++|+|+++
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----~~~~~~v~~~~gg~~ 115 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA--MPQTL-PTPMRGEFYRTLTAIL----PPELNRVFPVNSGTE 115 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTS-CCHHHHHHHHHHHHTS----CTTEEEEEEESSHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCC--Ccccc-CCHHHHHHHHHHHHhc----CCCcCEEEEcCcHHH
Confidence 345688998875 3443 789999999999875421 11234 3345566666666664 677899999999999
Q ss_pred HHHHH-HHhc--CCCCEEEEeCCCChhhh-hhHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcC
Q 045431 138 DISRL-QIVF--GSNVTMAVQDPSYPAYV-DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCS 213 (433)
Q Consensus 138 al~~l-~~l~--~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 213 (433)
++.++ ..+. .+||.|++.+|+|++.. ..+...|...+...+.....++..++..+.+.+...+ .+++++|+++.
T Consensus 116 a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~ 193 (395)
T 1vef_A 116 ANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAV--DEETAAVILEP 193 (395)
T ss_dssp HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHC--CTTEEEEEECS
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHh--ccCEEEEEEeC
Confidence 99974 4442 67899999999997644 4555556432100000000123333322111111111 24678777655
Q ss_pred CCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc
Q 045431 214 PNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP 292 (433)
Q Consensus 214 p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~ 292 (433)
++||||.++ +.+++++|.++|++||++||+||+|+++...+.+.++.......+ ++ ||||+++ +|+|+||++++
T Consensus 194 ~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d-~~---s~sK~~~-~g~~~G~~~~~ 268 (395)
T 1vef_A 194 VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD-IL---TLAKALG-GGVPLGVAVMR 268 (395)
T ss_dssp EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS-EE---EECGGGG-TTSSCEEEEEE
T ss_pred ccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCC-EE---EEccccc-CCCceEEEEeh
Confidence 588999865 688899999999999999999999997654443322222211123 22 8899998 59999999999
Q ss_pred ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCee--ecCCCcc
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKV--YGGKNAP 370 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~--~~~~~g~ 370 (433)
++++ +.+...........+.+.+.++.++++... . +...++++++++++.+.|++++..+ ..+..|+
T Consensus 269 ~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~al~~~~-~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~ 337 (395)
T 1vef_A 269 EEVA--------RSMPKGGHGTTFGGNPLAMAAGVAAIRYLE-R--TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGL 337 (395)
T ss_dssp HHHH--------HTSCTTSSCCSSTTCHHHHHHHHHHHHHHH-H--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETT
T ss_pred HHHH--------hhhccCCcCCCcCCCHHHHHHHHHHHHHHH-h--CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEE
Confidence 8764 222221122344568888888777775321 1 3467788889999999998875321 1223678
Q ss_pred EEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 371 YVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
++|++++. ...++...+++++||.+.|+ +++++||++ ..+++++++++++|+++++
T Consensus 338 ~~~~~~~~-~~~~l~~~l~~~~gi~v~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 338 MVGLELKE-KAAPYIARLEKEHRVLALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp EEEEEESS-CSHHHHHHHHHHHCEECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcC-hHHHHHHHHHHHCCeEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999874 35677777773559999985 257999985 5689999999999999874
No 119
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.97 E-value=2.1e-30 Score=251.28 Aligned_cols=330 Identities=14% Similarity=0.118 Sum_probs=224.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC---CCCHH--HHHHHH-HHHhccCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE---QGEKP--LRAAIA-STFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~---~g~~~--lr~~la-~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
+.|+|..|.+++ |+.+.+++.+.+.+ .....|+.. .|.+. ++++++ +++.+.+++++++|++++|+.
T Consensus 24 ~~i~~~~~~~~~--~~~v~~a~~~~~~~----~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~- 96 (407)
T 2dkj_A 24 EGLELIASENFV--SKQVREAVGSVLTN----KYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQ- 96 (407)
T ss_dssp TSEECCTTCCCC--CHHHHHHHTSGGGG----CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHH-
T ss_pred cceeeccCCCCC--CHHHHHHHHhhhhc----CcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHH-
Confidence 579999998765 88999999888753 112334322 25553 444222 233332377777788888875
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhh---hhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----C-CCcc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYV---DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----V-ARTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 207 (433)
++.+ +..++++||+|++++|+|+.+. ..+...|.. ...+.++.+++ ++..+++. . .+++
T Consensus 97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~ 165 (407)
T 2dkj_A 97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKL----------YKVVSYGVRPD-TELIDLEEVRRLALEHRPK 165 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHH----------SEEEEECCCTT-TSSCCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCce----------EEEEecCCCcc-cCccCHHHHHHHHhhcCCe
Confidence 8876 5677899999999999998883 444444421 12333333321 22233221 1 3789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+|++++|+|| ...+ +++|.++|++||+++|+||+|+. +.+.+...+. ++ ..+++++|+||.+ +|+|+
T Consensus 166 ~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~---~~di~~~s~sK~l--~g~~~ 233 (407)
T 2dkj_A 166 VIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP--LP---YAHVVTSTTHKTL--RGPRG 233 (407)
T ss_dssp EEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC--TT---TCSEEEEESSGGG--CCCSC
T ss_pred EEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCc--cc---cccEEEEeccccC--CCCCc
Confidence 9999899998 5555 89999999999999999999997 5444432211 11 2458899999965 68899
Q ss_pred eeeecc-ccccccCCcchhHHHHHHHhhcc-CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 287 GWTVIP-KELLFSDGFPVAKDFNRIVCTCF-NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 287 G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
||++++ ++++ +.+........ .+.+.....++.++++.....++++++++++++++++.+.|++.|+.+.
T Consensus 234 G~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 305 (407)
T 2dkj_A 234 GLILSNDPELG--------KRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIV 305 (407)
T ss_dssp EEEEESCHHHH--------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred eEEEECCHHHH--------HHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 999999 5664 55555442222 2333433334455554321246788999999999999999999888876
Q ss_pred c-CCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCC----CCCCCCeEEEeec------cChhHHHHHHHHHHHh
Q 045431 365 G-GKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGF----GPGGEGFIRVSAF------GHRGNVLEACKRFKHL 431 (433)
Q Consensus 365 ~-~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f----~~~~~~~iRi~~~------~~~~~l~~~l~~l~~~ 431 (433)
. +..++++|+.++. .+..++...+ .++||.+.+|..| ....++++|+++. .+++++++++++|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 384 (407)
T 2dkj_A 306 TGGTDNHLFLVDLRPKGLTGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRA 384 (407)
T ss_dssp GGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred cCCCCceEEEEECcccCCCHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHH
Confidence 5 3578899999973 3556666665 5569999998754 2234678999973 6899999999999987
Q ss_pred h
Q 045431 432 Y 432 (433)
Q Consensus 432 l 432 (433)
+
T Consensus 385 ~ 385 (407)
T 2dkj_A 385 L 385 (407)
T ss_dssp H
T ss_pred H
Confidence 5
No 120
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.97 E-value=6.1e-31 Score=249.58 Aligned_cols=316 Identities=17% Similarity=0.188 Sum_probs=210.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
.+|+|+.+.+++ +++.+.+++.+.. .....|++..+..+||+++|+++ +. +++++++|+++++.+ +
T Consensus 4 ~~i~~~~~~~~~-p~~~~~~a~~~~~------~~~~~y~~~~~~~~l~~~la~~~----g~--~~~~~~~~gt~a~~~~~ 70 (347)
T 1jg8_A 4 MMIDLRSDTVTK-PTEEMRKAMAQAE------VGDDVYGEDPTINELERLAAETF----GK--EAALFVPSGTMGNQVSI 70 (347)
T ss_dssp -CEECSCGGGCC-CCHHHHHHHHTCC------CCCGGGTCCHHHHHHHHHHHHHH----TC--SEEEEESCHHHHHHHHH
T ss_pred eEEEeccccCCC-CCHHHHHHHhcCC------CCCcccCCChHHHHHHHHHHHHh----CC--ceEEEecCcHHHHHHHH
Confidence 579999999876 5567777776532 11235777788999999999998 54 356777777788776 6
Q ss_pred HHhcCCCCEEEEeCCCChhhhh---hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C------CCccEEE
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVD---SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V------ARTDIIF 210 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~------~~~~~i~ 210 (433)
..++++||+|++++|+|..... .....| .+++.+ .++++.++.+ +++ . +++++|+
T Consensus 71 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 71 MAHTQRGDEVILEADSHIFWYEVGAMAVLSG------------VMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIA 137 (347)
T ss_dssp HHHCCTTCEEEEETTCHHHHSSTTHHHHHTC------------CEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHhcCCCCEEEEcCcchhhhccccchhhccC------------eEEEEe-cCCCCccCHHHHHHHhccccccccCceEEE
Confidence 7778999999999999976443 455566 355555 3222111111 111 1 2689999
Q ss_pred EcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEecccccc--ccCCCCCcccccCCCCcceEEEeccccccccccccee
Q 045431 211 FCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYALY--ISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLG 287 (433)
Q Consensus 211 l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~--~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G 287 (433)
+++||||| |.+++.+++++|+++|++||+++|+|++|... .+.+ .+...+....+ .++.|+||++++ + +|
T Consensus 138 ~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~~~d--~~~~s~sK~l~~-~--~G 210 (347)
T 1jg8_A 138 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG--VPVKEYAGYAD--SVMFCLSKGLCA-P--VG 210 (347)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC--CCHHHHHHTCS--EEEEESSSTTCC-S--SC
T ss_pred EeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcC--CChHHhccccc--EEEEecccccCC-C--ce
Confidence 99999999 99999999999999999999999999987531 1122 11221111123 334589999973 3 67
Q ss_pred -eeeccccccccCCcchhHHHHHHHhhcc--CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 288 -WTVIPKELLFSDGFPVAKDFNRIVCTCF--NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 288 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
|++++++++ +.+........ ...+.+.+.++...++... +.++ +..++++.+.+.|+++|+.+.
T Consensus 211 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~----~~~~~~~~l~~~L~~~~~~~~ 277 (347)
T 1jg8_A 211 SVVVGDRDFI--------ERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DRLK----EDHENARFLALKLKEIGYSVN 277 (347)
T ss_dssp EEEEECHHHH--------HHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TTHH----HHHHHHHHHHHHHHHHTCBCC
T ss_pred EEEEcCHHHH--------HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHhcCceec
Confidence 466676664 44443332222 1234455555555554221 1122 223566788888887776652
Q ss_pred -cCCCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 365 -GGKNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 365 -~~~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+..++++|++++ +.+..++...+.+ +||.+.++. .+++|+++ ..+++++++++++|++++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~~l~~~l 343 (347)
T 1jg8_A 278 PEDVKTNMVILRTDNLKVNAHGFIEALRN-SGVLANAVS------DTEIRLVTHKDVSRNDIEEALNIFEKLF 343 (347)
T ss_dssp GGGCCSSEEEEECTTSSSCHHHHHHHHHH-HTEECEEEE------TTEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCcceEEEEEcccccCCHHHHHHHHHH-CCCEEecCC------CCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3456788999997 3456777777765 599998752 46899996 348999999999999875
No 121
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.97 E-value=3e-30 Score=247.02 Aligned_cols=318 Identities=14% Similarity=0.068 Sum_probs=208.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCDISRL 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~al~~l 142 (433)
++||++.+.++.+.|+.+.+++. .. .+| ..+.+.+++++.+.+++ +++++++++|+++++.++
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~----~~------~~~------~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~ 92 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLN----TY------IGS------SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILAT 92 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHT----ST------THH------HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred ceeeecccCCCCCCCHHHHHHHH----Hh------cCc------hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHH
Confidence 68999998888889999988875 11 011 33445555554443365 457899999999999974
Q ss_pred HHhcCCCCEEEEeCCCChhhhh---hHHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccE-EEEcCCCCcc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVD---SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDI-IFFCSPNNPT 218 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~l~~p~nPt 218 (433)
...+ +||+|++++|+|+++.. .++..| .+++.+ .+.+ .+ ... .+++++ |++++|||||
T Consensus 93 ~~~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g------------~~~~~v-~d~~-~l-~~~--~~~~~~~v~~~~p~npt 154 (374)
T 2aeu_A 93 ILAL-KPKKVIHYLPELPGHPSIERSCKIVN------------AKYFES-DKVG-EI-LNK--IDKDTLVIITGSTMDLK 154 (374)
T ss_dssp HHHH-CCSEEEEECSSSSCCTHHHHHHHHTT------------CEEEEE-SCHH-HH-HTT--CCTTEEEEEECBCTTSC
T ss_pred HHhC-CCCEEEEecCCCCccHHHHHHHHHcC------------cEEEEe-CCHH-HH-Hhc--CCCccEEEEEccCCCCC
Confidence 3344 99999999998877554 455556 355555 3221 11 122 357899 8889999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEecccccccc-CCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYIS-DDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF 297 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~ 297 (433)
|. +.+++++|.++|++||+++|+||+|+.+.. .....+.... +..++++|+||++ +|+|+||++++++++
T Consensus 155 G~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~----~~di~~~S~sK~l--~g~~~G~~~~~~~~~- 225 (374)
T 2aeu_A 155 VI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKELV- 225 (374)
T ss_dssp BC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHHH-
T ss_pred CC--CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcccc----CCcEEEecCcccc--cCcceEEEEECHHHH-
Confidence 97 788999999999999999999999987642 1101111222 2248899999986 578999999998875
Q ss_pred cCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHH----HHHHHHHHhhc----CCeee-cCCC
Q 045431 298 SDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKEN----TDIIVETFNSL----GFKVY-GGKN 368 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~----g~~~~-~~~~ 368 (433)
+.+..........++.+.|.++.++++....+.+++..+..+.. ++.+.+.|... |+.+. .+.+
T Consensus 226 -------~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g 298 (374)
T 2aeu_A 226 -------DKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTG 298 (374)
T ss_dssp -------HHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSE
T ss_pred -------HHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCce
Confidence 56665554333446788888888887654321222222222222 45555555542 55554 3444
Q ss_pred ccEEEEECCCC----ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc-C--hhHHHHHHHHHHHhh
Q 045431 369 APYVWVQFPGR----SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG-H--RGNVLEACKRFKHLY 432 (433)
Q Consensus 369 g~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~--~~~l~~~l~~l~~~l 432 (433)
.++.|..++.. ++.++...+++++||.+.||..| +.+++++||+++. + +.+++++++.|++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~-~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l 368 (374)
T 2aeu_A 299 FVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM-PGASKSLRIDLTSRDAERIDDNYIIKAIVESI 368 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS-CSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred EEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC-CCCCCeEEEEcCCchHHHHHHHHHHHHHHHHH
Confidence 44555555421 01225556777779999999877 3456789999854 2 334778777777665
No 122
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=6.3e-30 Score=248.84 Aligned_cols=335 Identities=13% Similarity=0.074 Sum_probs=218.7
Q ss_pred CCCceEEecCCCC--CCC-C-hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CCcEEEcCCh
Q 045431 61 PDAEVISLGIGDT--TEP-I-PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EGDIFVSDGA 135 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~-~-~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~G~ 135 (433)
++...+|++.+.+ ++. . |+.+.+++.+++.+.. .|+...+..+++.++++.+.+.++++ +++|++|+|+
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg 113 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA------HAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSG 113 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC------CCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc------cccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCch
Confidence 4556899988774 333 3 7999999999986531 12111222334444444444434666 7899999999
Q ss_pred HHHHHHH-HHhcC-CCCEEEEeCCCChhhhhhHHHhCCcc-cc-cccccccceEEEeecCccCC----------------
Q 045431 136 KCDISRL-QIVFG-SNVTMAVQDPSYPAYVDSSVIMGQTG-EF-QKDAEKYGKIEYMRCTAENG---------------- 195 (433)
Q Consensus 136 ~~al~~l-~~l~~-~gd~Vl~~~p~~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~~~~~~~~~---------------- 195 (433)
++++.++ ..+.. +||+|++.+|+|+++.......+... .+ .........++.++.+.+..
T Consensus 114 ~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~ 193 (419)
T 2eo5_A 114 TEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVN 193 (419)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHH
Confidence 9999974 43333 39999999999987655443332110 00 00111112456666543210
Q ss_pred c-ccCCC-CC-------CCccEEEEcCCC-Ccccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 196 F-FPDLS-TV-------ARTDIIFFCSPN-NPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 196 ~-~~~~~-~~-------~~~~~i~l~~p~-nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
. ..+++ +. ++++ +++++|+ ||||. +.+.+++++|.++|++||+++|+||+|.++.+.+....+....
T Consensus 194 ~~~~~l~~~~i~~~~~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~- 271 (419)
T 2eo5_A 194 RVIEFIEDYIFVNLVPPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFN- 271 (419)
T ss_dssp HHHHHHHHTHHHHTCCGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGT-
T ss_pred HHHHHHHHHHHhhccCCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcC-
Confidence 0 11233 21 2334 5667785 67896 6788999999999999999999999999876654322222222
Q ss_pred CCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIG 343 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 343 (433)
...+++ ||||.++ +| +|+||++++++++ . + ......+.+.++++|.++.++++. +++..+
T Consensus 272 ~~~d~~---t~sK~~~-~G~~riG~~~~~~~~~-~--------~-~~~~~~t~~~n~~~~~aa~aal~~-----~~~~~~ 332 (419)
T 2eo5_A 272 TVPDVI---TLAKALG-GGIMPIGATIFRKDLD-F--------K-PGMHSNTFGGNALACAIGSKVIDI-----VKDLLP 332 (419)
T ss_dssp CCCSEE---EECGGGG-TTTSCCEEEEEEGGGC-C--------C-------CCCCCHHHHHHHHHHHHH-----HHHHHH
T ss_pred CCCCEE---Eeccccc-CCccceEEEEEchHhh-c--------C-CcccCCCCCCCHHHHHHHHHHHHH-----HHHHHH
Confidence 222333 8999998 69 9999999998874 2 1 112234556789999999988863 133788
Q ss_pred HHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChh
Q 045431 344 FYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRG 419 (433)
Q Consensus 344 ~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~ 419 (433)
+++++++++.+.|+++ +....+ .|+|+|+++.+ .... +...++ ++||.+.|+. .+++||++ ..+++
T Consensus 333 ~~~~~~~~l~~~L~~~-~~~~~~-~g~~~~i~~~~~~~~~~-~~~~l~-~~Gv~v~~~~------~~~lRis~~~~~t~e 402 (419)
T 2eo5_A 333 HVNEIGKIFAEELQGL-ADDVRG-IGLAWGLEYNEKKVRDR-IIGESF-KRGLLLLPAG------RSAIRVIPPLVISEE 402 (419)
T ss_dssp HHHHHHHHHHHHHTTS-SSEEEE-ETTEEEEECSCHHHHHH-HHHHHH-HTTEECEEET------TTEEEECCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHh-hhheEe-eeEEEEEEEecCccHHH-HHHHHH-HCCCEEecCC------CCEEEEECCCCCCHH
Confidence 8999999999999886 433433 57888999842 1233 666665 5699999863 47899974 56999
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 403 ~i~~~l~~l~~~l 415 (419)
T 2eo5_A 403 EAKQGLDILKKVI 415 (419)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 123
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=3.9e-30 Score=250.09 Aligned_cols=321 Identities=9% Similarity=0.106 Sum_probs=223.9
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCcEE-EcCChHHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGDIF-VSDGAKCDISR 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~-~~~G~~~al~~ 141 (433)
.+.|+.+ +.+.++.+.+++.+. ....|.+ .....++++.+++++ ++++++++ +++|+++++.+
T Consensus 12 ~~~~~p~--p~~~~~~v~~a~~~~--------~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~~~~~s~t~al~~ 77 (416)
T 3isl_A 12 RTIMTPG--PVEVDPRVLRVMSTP--------VVGQFDPAFTGIMNETMEMLRELF----QTKNRWAYPIDGTSRAGIEA 77 (416)
T ss_dssp CEECSSS--SCCCCHHHHHHTTSC--------CCCTTSHHHHHHHHHHHHHHHHHT----TCCCSEEEEEESCHHHHHHH
T ss_pred ceeecCC--CcCcCHHHHHHhccc--------CCCCccHHHHHHHHHHHHHHHHHh----CCCCCcEEEecCcHHHHHHH
Confidence 3444433 345666666655441 1222321 223455666666665 77777766 88899999987
Q ss_pred -HHHhcCCCCEEEEeCCCChh--hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C-CCccEEEEcCC
Q 045431 142 -LQIVFGSNVTMAVQDPSYPA--YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V-ARTDIIFFCSP 214 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~i~l~~p 214 (433)
+..++++||+|++++|+|++ +...++..| .+++.++.+.++.++.+ +++ . +++++|++++|
T Consensus 78 ~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 145 (416)
T 3isl_A 78 VLASVIEPEDDVLIPIYGRFGYLLTEIAERYG------------ANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHG 145 (416)
T ss_dssp HHHHHCCTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred HHHHhcCCCCEEEEecCCcccHHHHHHHHhcC------------CeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEcc
Confidence 67789999999999999987 666777778 47888888755432222 221 1 47899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
|||||.+++ +++|.++|++||+++|+|++|+.... +.++.. .+..+++.|+||+++ ++.++|+++++++
T Consensus 146 ~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~----~~~d~~~~s~~K~l~-g~~g~g~~~~~~~ 214 (416)
T 3isl_A 146 ETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC---EVKVDE----WKIDAAIGGTQKCLS-VPSGMAPITYNER 214 (416)
T ss_dssp ETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS---CCCTTT----TTCSEEECCSSSTTC-CCSSEEEEEECHH
T ss_pred CCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC---Ccchhh----cCCCEEEecCccccC-CCCCeEEEEECHH
Confidence 999999999 78899999999999999999874221 222221 234589999999863 5556899999988
Q ss_pred ccccCCcchhHHHHHH--------------------------------------HhhccCCCcHHHHHHHHHhcCcCChh
Q 045431 295 LLFSDGFPVAKDFNRI--------------------------------------VCTCFNGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~q~~~~~~l~~~~~~ 336 (433)
++ +.+... ........+...+.++.++++.....
T Consensus 215 ~~--------~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~ 286 (416)
T 3isl_A 215 VA--------DVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEE 286 (416)
T ss_dssp HH--------HHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HH--------HHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 74 222211 01112244666666665665522212
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeeecCCC---ccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE
Q 045431 337 AVHEVIGFYKENTDIIVETFNSLGFKVYGGKN---APYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi 412 (433)
.+++.+++++++++++.+.|++.|+.+..+.+ +.++|+.++ +.+..++...+++++||.+.+|.. +..++++||
T Consensus 287 g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~--~~~~~~iRi 364 (416)
T 3isl_A 287 GLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFG--PLAGKIWRI 364 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCS--TTTTTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC--CCCCCEEEE
Confidence 27889999999999999999998888776543 678899997 566778888877767999999873 334689999
Q ss_pred ee--ccChhH-HHHHHHHHHHhh
Q 045431 413 SA--FGHRGN-VLEACKRFKHLY 432 (433)
Q Consensus 413 ~~--~~~~~~-l~~~l~~l~~~l 432 (433)
++ ..++++ +++++++|++++
T Consensus 365 ~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 365 GTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp ECCGGGCSHHHHHHHHHHHHHHH
T ss_pred ecccCCCcHHHHHHHHHHHHHHH
Confidence 97 235555 999999999875
No 124
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.97 E-value=9.9e-31 Score=252.19 Aligned_cols=314 Identities=13% Similarity=0.127 Sum_probs=221.5
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCC-cEEEcCChHHHHHH-HHHhcCCC
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEG-DIFVSDGAKCDISR-LQIVFGSN 149 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~-~i~~~~G~~~al~~-l~~l~~~g 149 (433)
+.++|+.+.+++.+.+. ..|.+ .....++++.+++++ +.+.+ +|++|+|+++++.+ +..++++|
T Consensus 31 p~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~gg~~al~~~~~~~~~~g 98 (393)
T 3kgw_A 31 PSNLAPRVLAAGSLRMI--------GHMQKEMLQIMEEIKQGIQYVF----QTRNPLTLVVSGSGHCAMETALFNLLEPG 98 (393)
T ss_dssp CCCCCHHHHHHTTCCCC--------CTTSHHHHHHHHHHHHHHHHHH----TCCCSEEEEESCCTTTHHHHHHHHHCCTT
T ss_pred CCCCCHHHHHHhccccc--------CcccHHHHHHHHHHHHHHHHHh----CCCCCcEEEEeCCcHHHHHHHHHhcCCCC
Confidence 45678888877765321 11211 223456677777766 66544 59999999999987 67788999
Q ss_pred CEEEEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCccccCCC
Q 045431 150 VTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 150 d~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~~~~ 223 (433)
|+|+++.++|.+. ...+...| .+++.++.+.++.++.+ +++ .+ ++++|++++||||||.+++
T Consensus 99 d~vl~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~ 166 (393)
T 3kgw_A 99 DSFLTGTNGIWGMRAAEIADRIG------------ARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP 166 (393)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred CEEEEEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc
Confidence 9999999988643 55666667 47888887654333222 221 13 7899999999999999998
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcch
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPV 303 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~ 303 (433)
+++|.++|++||+++|+|++|+... .+..+.. .+..+++.|+||+++ ++.++||++++++++
T Consensus 167 ---l~~i~~l~~~~~~~li~De~~~~g~---~~~~~~~----~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~~------- 228 (393)
T 3kgw_A 167 ---LDGFGELCHRYQCLLLVDSVASLGG---VPIYMDQ----QGIDIMYSSSQKVLN-APPGISLISFNDKAK------- 228 (393)
T ss_dssp ---CTTHHHHHHHTTCEEEEECTTTTTT---SCCCTTT----TTCCEEEEESSSTTC-CCSSCEEEEECHHHH-------
T ss_pred ---HHHHHHHHHHcCCEEEEECCccccC---cccchhh----cCCCEEEecCccccc-CCCceeEEEECHHHH-------
Confidence 7789999999999999999987321 1221111 234588899999874 445599999998874
Q ss_pred hHHHHHHHh-----------------------hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 304 AKDFNRIVC-----------------------TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 304 ~~~~~~~~~-----------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
+.+..... ....+.+...+.++.++++.....++++++++++++++.+.+.|+++|
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 307 (393)
T 3kgw_A 229 -YKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMG 307 (393)
T ss_dssp -HHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33322110 112334666666666665532223468889999999999999999988
Q ss_pred CeeecCC----CccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee-c--cChhHHHHHHHHHHHhh
Q 045431 361 FKVYGGK----NAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA-F--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 361 ~~~~~~~----~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~-~--~~~~~l~~~l~~l~~~l 432 (433)
+.+..+. .+.++|+.++ +.+..++...+++++||.+.+|..+ ..++++|+++ . .+++++++++++|++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~--~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l 385 (393)
T 3kgw_A 308 LKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGP--TEERVLRIGLLGYNATTENVDRVAEALREAL 385 (393)
T ss_dssp CCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGG--GTTTEEEEECCGGGCCHHHHHHHHHHHHHHH
T ss_pred CeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCccc--CCCCEEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 8776332 3567789987 5567778888777669999998753 3467999997 4 38999999999999876
No 125
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.97 E-value=2.1e-29 Score=240.14 Aligned_cols=323 Identities=12% Similarity=0.098 Sum_probs=223.3
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC-CCCCCHHHHHHHHHHHhccCCC-CCCcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG-AEQGEKPLRAAIASTFYKDLGI-EEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~G~~~al~~- 141 (433)
.+.|.-|. .+.|+.+.+++.+++.+. ...|. ...+..++.+.+.+++.+.+++ ++++|++|+|+++++.+
T Consensus 5 ~~~~~p~p--~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~ 77 (362)
T 3ffr_A 5 KIYFTPGP--SELYPTVRQHMITALDEK-----IGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERI 77 (362)
T ss_dssp CEEECSSS--CCCCTTHHHHHHHHHHTT-----TTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHH
T ss_pred ceeccCCC--cCCCHHHHHHHHHHhcCC-----ccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHH
Confidence 46666553 457888888888887642 11111 1223334555555555543466 46899999999999997
Q ss_pred HHHhcCCCCEEEEeCCCChh-hhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCCCCCccEEEEcCCCCccc
Q 045431 142 LQIVFGSNVTMAVQDPSYPA-YVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LSTVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~p~nPtG 219 (433)
+..++++ +.+++..+.|.. +...++..| .+++.++.+.+..++.+ ++..+++++|++++|+||||
T Consensus 78 ~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~v~~~~~~nptG 144 (362)
T 3ffr_A 78 IQNCVEK-KSFHCVNGSFSKRFYEFAGELG------------REAYKEEAAFGKGFYPADITVPADAEIICLTHNETSSG 144 (362)
T ss_dssp HHHHCSS-EEEEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCGGGCCCCTTCCEEEEESEETTTT
T ss_pred HHhccCC-cEEEEcCcHHHHHHHHHHHHhC------------CCeEEEecCCCCCCCHHHHhccCCccEEEEEcCCCCcc
Confidence 5777777 555566666652 233555566 47778887644333222 33346899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceeeeeccccccc
Q 045431 220 AAATREQLTRLVQFAKDN-GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKELLF 297 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~ 297 (433)
.+++ +++|.++|++| |+++|+|++|+.... +.++. +..+++.|+||+++ ++| +|+++++++++
T Consensus 145 ~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~---~~~~~------~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~- 209 (362)
T 3ffr_A 145 VSMP---VEDINTFRDKNKDALIFVDAVSSLPYP---KFDWT------KIDSVFFSVQKCFGLPAG--LGVWILNDRVI- 209 (362)
T ss_dssp EECC---HHHHTTSGGGSTTSEEEEECTTTTTSS---CCCTT------SCSEEEEETTSTTCCCSC--CEEEEEEHHHH-
T ss_pred eeCC---HHHHHHHHHhCCCCEEEEecccccCCc---ccChh------HCcEEEEecccccCCCCc--eEEEEECHHHH-
Confidence 9999 77888899999 999999999885322 11111 13488999999998 667 68888888774
Q ss_pred cCCcchhHHHHHHHh---------------------hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 298 SDGFPVAKDFNRIVC---------------------TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 298 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
+.+..... ....+.+...+.++.++++......+++..++++++++++.+.|
T Consensus 210 -------~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 282 (362)
T 3ffr_A 210 -------EKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYI 282 (362)
T ss_dssp -------HHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 33333221 11344566666666555542111236888899999999999999
Q ss_pred hhc-CCeeecC----CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHH
Q 045431 357 NSL-GFKVYGG----KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFK 429 (433)
Q Consensus 357 ~~~-g~~~~~~----~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~ 429 (433)
+++ |+.+..+ ..+.++|+.+++ +..++.+.+.++ ||.+.+|..+ .+++++||++. .+++++++++++|+
T Consensus 283 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-gi~~~~g~~~--~~~~~iRis~~~~~~~e~i~~l~~~l~ 358 (362)
T 3ffr_A 283 ESSKVFSFGVEDAKLRSMTTIVANTTM-LPGEINKILEPF-DMAVGAGYGS--KKETQIRIANFPAHSLEQVHKLVQTLK 358 (362)
T ss_dssp HHCSSEEESSSCGGGBCSSEEEEEESS-CHHHHHHHHGGG-TEEEEECSGG--GTTTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHccCceeccCChhhcCCceEEEecCC-CHHHHHHHHHHC-CeEEecCccc--cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 998 8887652 246688899887 677777777666 9999998543 34679999964 48999999999999
Q ss_pred HhhC
Q 045431 430 HLYK 433 (433)
Q Consensus 430 ~~l~ 433 (433)
++++
T Consensus 359 ~~~~ 362 (362)
T 3ffr_A 359 EKIG 362 (362)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 8763
No 126
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.97 E-value=3.1e-30 Score=251.02 Aligned_cols=337 Identities=12% Similarity=0.085 Sum_probs=221.9
Q ss_pred CCCceEEecCCC--CCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGD--TTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+||+.+. ..+ ..++.+.+++.+++.+... ....| ..++++++++.+.+..+ +++|++|+|+++
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~--~~~~~-----~~~~~~~l~~~la~~~g--~~~v~~~~ggte 125 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWH--TSNVF-----TNEPALRLGRKLIDATF--AERVLFMNSGTE 125 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC--CCTTS-----CCHHHHHHHHHHHHHSS--CSEEEEESSHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhccc--ccCcc-----CCHHHHHHHHHHHhhCC--CCeEEEeCCHHH
Confidence 456789998773 222 3678999999999865321 11123 23445555555544234 589999999999
Q ss_pred HHHH-HHHhcC-------CC-CEEEEeCCCChhhhhh-HHHhCCcccccccccccceEEEeecCccCCcccCCCCCCCcc
Q 045431 138 DISR-LQIVFG-------SN-VTMAVQDPSYPAYVDS-SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTD 207 (433)
Q Consensus 138 al~~-l~~l~~-------~g-d~Vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (433)
++.+ +..+.. +| +.|++.+|+|+++... ....|.......+......+..++.++...+...+ .++++
T Consensus 126 A~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i--~~~~~ 203 (420)
T 2pb2_A 126 ANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVM--DDHTC 203 (420)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHC--CTTEE
T ss_pred HHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHh--ccCce
Confidence 9997 444443 67 5999999999887544 33444321100011111234455542111111111 25788
Q ss_pred EEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+|+++.++|++|. +++.+++++|.++|++||+++|+||+|.++.+.+.+..+......+| ++ ||||.++ +|+|+
T Consensus 204 ~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~d-ii---t~sK~l~-~G~~i 278 (420)
T 2pb2_A 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPD-IL---TSAKALG-GGFPV 278 (420)
T ss_dssp EEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS-EE---EECGGGG-TTSCC
T ss_pred EEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCC-eE---Eeccccc-CCCce
Confidence 8888777888884 69999999999999999999999999988766554332222221233 33 7899998 99999
Q ss_pred eeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CC---
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GF--- 361 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~--- 361 (433)
||++++++++ +.+.......+.+.+++++.++.++|+.... +++.++++++++++.+.|+++ ++
T Consensus 279 G~~~~~~~l~--------~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 347 (420)
T 2pb2_A 279 SAMLTTQEIA--------SAFHVGSHGSTYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIF 347 (420)
T ss_dssp EEEEECHHHH--------TTCC----CCEECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEEEhHHHH--------HhhcCCCcCcccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 9999998864 2222222334456788999888887763222 456777888888888888764 22
Q ss_pred eeecCCCccEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 362 KVYGGKNAPYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
....+ .|.++|++++.. +..++...+++ +||.+.|+. ++++||+ +..+++++++++++|++++
T Consensus 348 ~~~~~-~g~~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~------~~~iRl~~~~~~t~eei~~~~~~l~~~l 415 (420)
T 2pb2_A 348 SDIRG-MGLLIGAELKPKYKGRARDFLYAGAE-AGVMVLNAG------ADVMRFAPSLVVEEADIHEGMQRFAQAV 415 (420)
T ss_dssp EEEEE-ETTEEEEEECGGGTTCHHHHHHHHHH-TTEECEESS------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEe-cceEEEEEECCCchHHHHHHHHHHHH-CCCEEEeCC------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 22333 578889998742 45667777766 599999863 5789999 4679999999999999875
No 127
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.97 E-value=1.9e-30 Score=246.42 Aligned_cols=319 Identities=14% Similarity=0.085 Sum_probs=220.7
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCC-CCCCCHHHHHHHHHHHhccCCCC--CCcEEEcCChHHHHHHH-HHhcCCC
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYG-AEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISRL-QIVFGSN 149 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~la~~l~~~~~~~--~~~i~~~~G~~~al~~l-~~l~~~g 149 (433)
+.++|+.+.+++.+.+.. +.|. ...+..++|+.+++++ +++ +++|++|+|+++++.++ ..+++
T Consensus 8 p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~~~~-- 74 (353)
T 2yrr_A 8 PTPIPERVQKALLRPMRG-------HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLANLDR-- 74 (353)
T ss_dssp SCCCCHHHHGGGGSCCCC-------TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHTCSC--
T ss_pred CCCCCHHHHHHHhccccc-------ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHHhcC--
Confidence 356788888888775531 1221 1245788899999887 654 78999999999999985 45555
Q ss_pred CEEEEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC-CccEEEEcCCCCccccCCC
Q 045431 150 VTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA-RTDIIFFCSPNNPTGAAAT 223 (433)
Q Consensus 150 d~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~i~l~~p~nPtG~~~~ 223 (433)
|+|++++|+|+++ ...++..| .+++.++.+.++.++.+ +++ .+ ++++|++++|+||||.+++
T Consensus 75 d~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 142 (353)
T 2yrr_A 75 GPVLVLVNGAFSQRVAEMAALHG------------LDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP 142 (353)
T ss_dssp CCEEEEECSHHHHHHHHHHHHTT------------CCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred CcEEEEcCCCchHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC
Confidence 8999999999885 33445566 47788887654322222 221 13 7889999999999999998
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceeeeeccccccccCC--
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKELLFSDG-- 300 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~~~~~~-- 300 (433)
+++|.++|++||++||+|++|+.. . .+.++..++ ..+++.|++|+++ .+| +||++++++++..-.
T Consensus 143 ---~~~i~~l~~~~~~~li~D~a~~~~-~--~~~~~~~~~----~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~l~~~ 210 (353)
T 2yrr_A 143 ---AEAIGALAKEAGALFFLDAVTTLG-M--LPFSMRAMG----VDYAFTGSQKCLSAPPG--LAPIAASLEARKAFTGK 210 (353)
T ss_dssp ---HHHHHHHHHHHTCEEEEECTTTTT-T--SCCCHHHHT----CSEEECCTTSTTCCCSS--CEEEEECHHHHHHCCCC
T ss_pred ---HHHHHHHHHHcCCeEEEEcCcccc-c--ccccccccC----ceEEEecCcccccCCCc--eEEEEECHHHHHHhccC
Confidence 678999999999999999999632 1 133333331 2488899999663 345 799999988752110
Q ss_pred cch---hHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC--CccEEE
Q 045431 301 FPV---AKDFNRIV--CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK--NAPYVW 373 (433)
Q Consensus 301 ~~~---~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~--~g~~~~ 373 (433)
+.. ...+.... .....+.+...+.++.++++......+++.+++++++++++.+.|++.|+++..+. .++++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 290 (353)
T 2yrr_A 211 RGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLV 290 (353)
T ss_dssp SCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEE
T ss_pred CCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEE
Confidence 000 00010111 11223456666666556554221123678889999999999999998888876654 567778
Q ss_pred EECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHH-HHHHHHHHhh
Q 045431 374 VQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVL-EACKRFKHLY 432 (433)
Q Consensus 374 ~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~-~~l~~l~~~l 432 (433)
+.++ +.+..++...+.++ ||.+.+|..|. .++++|+++ ..++++++ +++++|++++
T Consensus 291 ~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l 350 (353)
T 2yrr_A 291 VRPPEGVDADRLVRALYAE-GVAVAGGIGPT--RGQVLRLGLMGEGARREAYQAFLKALDRAL 350 (353)
T ss_dssp EECCTTCCHHHHHHHHHHT-TEECEECCGGG--TTTCEEEECSGGGSCHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHC-CEEEeCCcccc--CCCeEEEecCccCCHHHHHHHHHHHHHHHH
Confidence 9987 55667777777665 99999998653 357899997 35888998 9999999875
No 128
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.97 E-value=1.5e-29 Score=248.70 Aligned_cols=348 Identities=9% Similarity=0.025 Sum_probs=224.3
Q ss_pred cCCCCceEEecCCC---CCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGD---TTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..|||+.|. +--..++.+.+++.+++.+.. . ....+..+++.++++++.+..+.+.+ |++|+|+
T Consensus 45 d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~--~-----~~~~~~~~~~~~la~~l~~~~~~~~~-v~~~~gg 116 (452)
T 3n5m_A 45 DIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLS--Y-----FPMSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSG 116 (452)
T ss_dssp ETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCC--C-----CCTTSEEHHHHHHHHHHHHHHTSCEE-EEEESSH
T ss_pred ECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcC--C-----cccccCCHHHHHHHHHHHHhCCCCce-EEEeCch
Confidence 34567799998883 323368999999999987532 1 12234456666666666553355555 9999999
Q ss_pred HHHHHH-HHHhc-----C---CCCEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCC--c-------
Q 045431 136 KCDISR-LQIVF-----G---SNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENG--F------- 196 (433)
Q Consensus 136 ~~al~~-l~~l~-----~---~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~--~------- 196 (433)
++++.. +..+. . ++++|++.+|+|+++......++....+. .+.........++...... +
T Consensus 117 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (452)
T 3n5m_A 117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIY 196 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhH
Confidence 999997 44444 4 78999999999999876666555432211 0111112233333211000 0
Q ss_pred ----ccCCCC------CCCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 197 ----FPDLST------VARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 197 ----~~~~~~------~~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
..++++ .+++++|+++.+ || ||.++ +.+++++|.++|++||+++|+||+|.++...+..........
T Consensus 197 ~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~ 275 (452)
T 3n5m_A 197 DVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDV 275 (452)
T ss_dssp GCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCC
Confidence 111211 134566666666 89 99766 888899999999999999999999998866554332222222
Q ss_pred CCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHH------HHHhhccCCCcHHHHHHHHHhcCcCChhH
Q 045431 265 AKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFN------RIVCTCFNGASNISQAGGLACLSPEGFKA 337 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 337 (433)
.++ +.||||.++ +| +|+||++++++++ +.+. .+....+.+.++++++++.++++....
T Consensus 276 ~~d----i~t~sK~l~-~G~~~ig~~~~~~~i~--------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 340 (452)
T 3n5m_A 276 KPD----IITMAKGIT-SAYLPLSATAVKREIY--------EAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN-- 340 (452)
T ss_dssp CCS----EEEECGGGG-TTSSCCEEEEEEHHHH--------GGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH--
T ss_pred CCC----EEeeccccc-CCCcceEEEEECHHHH--------HHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh--
Confidence 222 347999998 69 9999999998875 3331 112335566889999999988863211
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hc-CCeeecCCCccEEEEECCC--CC--------hHHHHHHHHHcCCeEecCCCCC
Q 045431 338 VHEVIGFYKENTDIIVETFN----SL-GFKVYGGKNAPYVWVQFPG--RS--------SWDVFSEILEKTHVVTTPGSGF 402 (433)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~----~~-g~~~~~~~~g~~~~~~~~~--~~--------~~~~~~~l~~~~gi~v~~g~~f 402 (433)
+.+.++++++.+.+.+.|+ ++ .+.... ..|.++++.+.. .. ..++...+++ +||.+.|+..|
T Consensus 341 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~ 417 (452)
T 3n5m_A 341 -ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIR-GKGLLVGIELVNDKETKEPIDNDKIASVVNACKE-KGLIIGRNGMT 417 (452)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE-ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH-TTEECEECTTS
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH-CCcEEeecCcc
Confidence 2334444555555555554 33 233344 356677777631 11 1345556555 59999999877
Q ss_pred CCCCCCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 403 GPGGEGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 403 ~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
....++++||+ +..+++++++++++|+++++
T Consensus 418 ~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 418 TAGYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp STTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 66667899997 56699999999999998864
No 129
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.97 E-value=8.6e-30 Score=246.26 Aligned_cols=320 Identities=12% Similarity=0.104 Sum_probs=215.8
Q ss_pred EecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC--CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HH
Q 045431 67 SLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG--AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQ 143 (433)
Q Consensus 67 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~ 143 (433)
.++.++|+++.++.+.+++.+++....+......|+ +.....++++.+++++ +.+ +.|++++| ++++.+ +.
T Consensus 24 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~-~~i~~~sG-~~a~~~~l~ 97 (398)
T 2rfv_A 24 TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLE----RGE-AGLATASG-ISAITTTLL 97 (398)
T ss_dssp TCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHH
T ss_pred CCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHh----CCC-cEEEECCH-HHHHHHHHH
Confidence 578888888777766666666554211111222333 3456678888888876 554 55555555 588886 67
Q ss_pred HhcCCCCEEEEeCCCChhhhhhH----HHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccc
Q 045431 144 IVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTG 219 (433)
Q Consensus 144 ~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG 219 (433)
.++++||+|++++|+|+++...+ ...| .+++.++.++...+...+ .+++++|++++|+||||
T Consensus 98 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG 163 (398)
T 2rfv_A 98 TLCQQGDHIVSASAIYGCTHAFLSHSMPKFG------------INVRFVDAAKPEEIRAAM--RPETKVVYIETPANPTL 163 (398)
T ss_dssp HHCCTTCEEEEESSSCHHHHHHHHTHHHHTT------------CEEEEECTTSHHHHHHHC--CTTEEEEEEESSBTTTT
T ss_pred HHhCCCCEEEEcCCCcccHHHHHHHHHHHcC------------CEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCC
Confidence 78899999999999999987766 5666 467777764211111111 25789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce-eeeecccccccc
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFS 298 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~ 298 (433)
.+++ +++|.++|++||+++|+||+|+.+.+.. ++ .+ +.++++.|+||+++.+|+|+ ||++++++++
T Consensus 164 ~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~-~~----~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~-- 230 (398)
T 2rfv_A 164 SLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ---PL-QL----GADIVVHSVTKYINGHGDVIGGIIVGKQEFI-- 230 (398)
T ss_dssp BCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---GG-GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHHH--
T ss_pred cccC---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-hh----CCcEEEEeCcccccCCCCceEEEEEECHHHH--
Confidence 9998 8999999999999999999999654431 12 22 34699999999998899998 9999998875
Q ss_pred CCcchhHHHHHHHhhc-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC---------------Ce
Q 045431 299 DGFPVAKDFNRIVCTC-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG---------------FK 362 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---------------~~ 362 (433)
.+.+....... ....+++.+.++.+.++.. ....+...++.+.+.+.|++.+ +.
T Consensus 231 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~ 300 (398)
T 2rfv_A 231 -----DQARFVGLKDITGGCMSPFNAWLTLRGVKTL-----GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300 (398)
T ss_dssp -----HHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHH
T ss_pred -----HHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHH
Confidence 11444444433 4457888898888888631 3334455667777777777642 22
Q ss_pred eecC---CCccEEEEECCCCChHHHHHHHHHc---CCeEecCCCCCC-------------C--------CCCCeEEEeec
Q 045431 363 VYGG---KNAPYVWVQFPGRSSWDVFSEILEK---THVVTTPGSGFG-------------P--------GGEGFIRVSAF 415 (433)
Q Consensus 363 ~~~~---~~g~~~~~~~~~~~~~~~~~~l~~~---~gi~v~~g~~f~-------------~--------~~~~~iRi~~~ 415 (433)
+..+ ..+.++++++++. .+....++++ .|+.+.+|..|. + ..++++|||+.
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~--~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 378 (398)
T 2rfv_A 301 LGQRQMSLPGGIISFEIAGG--LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG 378 (398)
T ss_dssp HHHHHCSSCCSEEEEEETTH--HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC
T ss_pred HHHhhCCCCceEEEEEEcCC--HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec
Confidence 2221 2466777788742 2223334433 388888887642 0 12689999974
Q ss_pred c--ChhHHHHHHHHHHHh
Q 045431 416 G--HRGNVLEACKRFKHL 431 (433)
Q Consensus 416 ~--~~~~l~~~l~~l~~~ 431 (433)
. ++++++.+++.|+++
T Consensus 379 ~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 379 LEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 3 578888888888764
No 130
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.97 E-value=2.8e-29 Score=242.50 Aligned_cols=341 Identities=11% Similarity=0.035 Sum_probs=220.0
Q ss_pred CCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.+++..+||+.+. ..+. .++.+.+++.+++.+.. +.| ..+..++++++++++.+..+ +++|++|+|++
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~--~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ 103 (395)
T 3nx3_A 33 DKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLL-----HTS--NLYYNENIAAAAKNLAKASA--LERVFFTNSGT 103 (395)
T ss_dssp TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCS-----CCC--TTSBCHHHHHHHHHHHHHHT--CSEEEEESSHH
T ss_pred CCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcc-----ccc--cccCCHHHHHHHHHHHHhcC--CCeEEEeCCHH
Confidence 4566789998883 3333 57999999999886432 111 12234555555555544234 68999999999
Q ss_pred HHHHH-HHHhc-------CCCCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCccCCcccCCCCCCCcc
Q 045431 137 CDISR-LQIVF-------GSNVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTAENGFFPDLSTVARTD 207 (433)
Q Consensus 137 ~al~~-l~~l~-------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (433)
+++.+ +..+. .++|.|++.+|+|+++......++....+ ........++..++.++-..+...+ .++++
T Consensus 104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~ 181 (395)
T 3nx3_A 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLV--NEKTC 181 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTC--CTTEE
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhc--cCCeE
Confidence 99987 44433 46799999999998876555444422111 0011111244555543211111111 25677
Q ss_pred EEEEcCCCCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+|++..++|++|.. ++.+++++|.++|++||+++|+||+|.++...+.+......+.. ..+.||||.++ +|+|+
T Consensus 182 ~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~----~d~~t~sK~~~-~G~~~ 256 (395)
T 3nx3_A 182 AIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQIL----PDIMTSAKALG-CGLSV 256 (395)
T ss_dssp EEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC----CSEEEECGGGT-TTSCC
T ss_pred EEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCC----CCEEEeccccc-CCCce
Confidence 77776667777765 78889999999999999999999999987655433322222211 22458999998 69999
Q ss_pred eeeeccccc-cccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcC-Cee
Q 045431 287 GWTVIPKEL-LFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLG-FKV 363 (433)
Q Consensus 287 G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 363 (433)
||+++++++ + +.+.......+...+++++.++.++++.... ..+++.++..+..++.+.+.+.++. +..
T Consensus 257 G~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (395)
T 3nx3_A 257 GAFVINQKVAS--------NSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKK 328 (395)
T ss_dssp EEEEECHHHHH--------HHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred EEEEEchhhhh--------hhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 999999887 4 3333333344556789999988888863211 2234444333444444444444443 333
Q ss_pred ecCCCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 364 YGGKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.. ..|+++|+.++.. ...++...+++ +||.+.|+. ++++||++ ..+++++++++++|++++
T Consensus 329 ~~-~~g~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~iRi~~~~~~t~e~i~~~l~~l~~~l 392 (395)
T 3nx3_A 329 RK-GLGFMQGLSLDKSVKVAKVIQKCQE-NALLLISCG------ENDLRFLPPLILQKEHIDEMSEKLRKAL 392 (395)
T ss_dssp EE-EETTEEEEEECTTSCHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EE-eEEEEEEEEeCCcchHHHHHHHHHH-CCCEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 33 3578999998853 55667667665 499999863 57999984 568999999999999876
No 131
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.97 E-value=2.4e-30 Score=246.46 Aligned_cols=296 Identities=14% Similarity=0.084 Sum_probs=197.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCC--EEEEeCCCChhhhh---hHHHhCC
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNV--TMAVQDPSYPAYVD---SSVIMGQ 171 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd--~Vl~~~p~~~~~~~---~~~~~g~ 171 (433)
...|++..+..+|++++++++ +.+ +.|++ +|+++++.+ +..++.+|| .|+++.++|..... .....|
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~----~~~-~~i~~-~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g- 112 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVL----GMD-DAVFF-PSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHP- 112 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHH----TCS-EEEEE-SCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSS-
T ss_pred cccccCChHHHHHHHHHHHHh----CCC-cEEEe-cCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhccC-
Confidence 346877788999999999998 543 34555 555667665 677788888 67777666655443 233344
Q ss_pred cccccccccccceEEEeecCccCCcccC-CCCCCCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEeccccc
Q 045431 172 TGEFQKDAEKYGKIEYMRCTAENGFFPD-LSTVARTDIIFFCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
..++.++.+. ..++.+ +++..++++|++++||||| |.+++.+++++|+++|++||++||+|++|..
T Consensus 113 -----------~~~~~v~~~~-~~~d~~~l~~~~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~ 180 (357)
T 3lws_A 113 -----------IETILVGAAD-RLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLF 180 (357)
T ss_dssp -----------CEEEECSCTT-SCCCHHHHHTCCSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred -----------cEEEEecCCC-CCcCHHHHhcCcCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhh
Confidence 3666666422 222221 3333458999999999998 9999999999999999999999999999872
Q ss_pred c--ccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhcc--CCCcHHHHHH
Q 045431 250 Y--ISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCF--NGASNISQAG 325 (433)
Q Consensus 250 ~--~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~ 325 (433)
. .+.+ .+...+....+ +++.|+||+++.++ .||++++++++ +.+.+...... .....+.+.+
T Consensus 181 ~~~~~~~--~~~~~~~~~~d--~~~~s~sK~~~~~~--gg~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 246 (357)
T 3lws_A 181 EMLPYYE--KTAAEIAGLFD--SIYISFYKGLGGIA--GAILAGPAAFC--------QTARIWKRRYGGDLISLYPYIVS 246 (357)
T ss_dssp HHHHHHT--CCHHHHHTTSS--EEEEESSSTTCCSS--CEEEEECHHHH--------HHHHHHHHHTTCCCSCCHHHHHH
T ss_pred hhhhhcC--CChHHHHhcCC--EEEEeccccCCCCc--eEEEEcCHHHH--------HHHHHHHHHhcCCcccchHHHHH
Confidence 1 1112 12222212223 44789999994233 29999988875 55554432221 1123333444
Q ss_pred HHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCee-ecCCCccEEEEECCCC--C-hHHHHHHHHHcCCeEecCCC
Q 045431 326 GLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKV-YGGKNAPYVWVQFPGR--S-SWDVFSEILEKTHVVTTPGS 400 (433)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~-~~~~~g~~~~~~~~~~--~-~~~~~~~l~~~~gi~v~~g~ 400 (433)
+...++. +.++ .+++.++++.+.+.|+++ |+.+ ..+..++++|++++.. . ..++...+ .++||.+.||.
T Consensus 247 ~~~~l~~----~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~g~ 320 (357)
T 3lws_A 247 ADYYYEL----RKDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQ-EETGLGFVGYL 320 (357)
T ss_dssp HHHHHHH----HTTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHH-HHHCEESCSCC
T ss_pred HHHHHHH----HHHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHH-HhcCeEEeccc
Confidence 4444442 2222 334677888999999988 8887 3567889999999753 2 34454444 55699999997
Q ss_pred CCCCCCCCeEEEeec-----cChhHHHHHHHHHHHhhC
Q 045431 401 GFGPGGEGFIRVSAF-----GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 401 ~f~~~~~~~iRi~~~-----~~~~~l~~~l~~l~~~l~ 433 (433)
.|. .+..++|+++. .+.+++++++++|+++++
T Consensus 321 ~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al~ 357 (357)
T 3lws_A 321 VDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAFS 357 (357)
T ss_dssp EEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC-
T ss_pred ccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhcC
Confidence 665 34568999853 478999999999998764
No 132
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.97 E-value=5.3e-30 Score=250.55 Aligned_cols=344 Identities=9% Similarity=-0.001 Sum_probs=217.5
Q ss_pred CCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+|+..+.+ ++. .++.+.+++.+++.+... ....| ..+++.++++.+.+.+++++++|++|+|+++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~gg~e 113 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH--LFSEM-----LSRPVVDLATRLANITPPGLDRALLLSTGAE 113 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTC-----CCHHHHHHHHHHHHHSCTTCCEEEEESCHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc--ccccc-----CCHHHHHHHHHHHHhCCCCcCEEEEeCchHH
Confidence 4556889876653 233 488999999999875321 11233 2234444444444434777899999999999
Q ss_pred HHHHH-HHhc--CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc--cCCc-----------ccCCC
Q 045431 138 DISRL-QIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENGF-----------FPDLS 201 (433)
Q Consensus 138 al~~l-~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~~~ 201 (433)
++.++ ..+. ..+++|++.+|+|++.............+..++.....+..++... ...+ ..+++
T Consensus 114 a~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le 193 (433)
T 1zod_A 114 SNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF 193 (433)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHH
Confidence 99974 3332 3468999999999886654433321111111111112333343321 0011 11122
Q ss_pred C--C----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEe
Q 045431 202 T--V----ARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETS 273 (433)
Q Consensus 202 ~--~----~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~ 273 (433)
+ . +++++ ++++| +||||. +.+.+++++|.++|++||++||+||+|+++...+....+......++ +.
T Consensus 194 ~~l~~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~d----i~ 268 (433)
T 1zod_A 194 DLIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD----IL 268 (433)
T ss_dssp HHHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EE
T ss_pred HHHHhcCCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCC----EE
Confidence 1 1 34444 55677 588996 57899999999999999999999999998765543222222221122 34
Q ss_pred cccccccccccceeeeeccccccccCCcchhHHHHHHHhh--ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHH
Q 045431 274 SFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCT--CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDI 351 (433)
Q Consensus 274 S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 351 (433)
||||.++ +|+|+||++++++++ +.+...... .+.+.++++|.++.++++.... +...+++++++++
T Consensus 269 s~sK~~~-~G~~ig~~~~~~~~~--------~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~ 336 (433)
T 1zod_A 269 TLSKTLG-AGLPLAAIVTSAAIE--------ERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR---DGLVARANVMGDR 336 (433)
T ss_dssp EECHHHH-TTSSCEEEEECHHHH--------HHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHH
T ss_pred Eeccccc-CCCCeeEEEEhHHHH--------HhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHH
Confidence 8999998 699999999998874 555442111 4455788999888888752111 2245566666777
Q ss_pred HHHHHhhc----C-CeeecCCCccEEEEECCC---------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--c
Q 045431 352 IVETFNSL----G-FKVYGGKNAPYVWVQFPG---------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--F 415 (433)
Q Consensus 352 l~~~l~~~----g-~~~~~~~~g~~~~~~~~~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~ 415 (433)
+.+.|+++ . +.... ..|+++|++++. ....++...++ ++||.+.||..|+ .++++||++ .
T Consensus 337 l~~~l~~l~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~--~~~~lRi~~~~~ 412 (433)
T 1zod_A 337 LRRGLLDLMERFDCIGDVR-GRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPG--MGGVFRIAPPLT 412 (433)
T ss_dssp HHHHHHHHHHHCTTEEEEE-EETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTT--SCCEEEECCCTT
T ss_pred HHHHHHHHHHhCCCeEEEE-EEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCC--CCCEEEEECCcC
Confidence 76666553 2 23333 357888998863 12455666666 4599999988764 357999974 5
Q ss_pred cChhHHHHHHHHHHHhh
Q 045431 416 GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l 432 (433)
.+++++++++++|++++
T Consensus 413 ~t~~~i~~~l~~l~~~l 429 (433)
T 1zod_A 413 VSEDEIDLGLSLLGQAI 429 (433)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 68999999999998875
No 133
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.97 E-value=1.5e-29 Score=248.31 Aligned_cols=350 Identities=12% Similarity=0.060 Sum_probs=224.4
Q ss_pred hcCCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC-CCcEEEcC
Q 045431 58 LKYPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE-EGDIFVSD 133 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~-~~~i~~~~ 133 (433)
...+++..|||..+. ..+. .++.+.+++.+++.+. ..|....+..+++.++++++.+..+.+ +++|++|+
T Consensus 59 ~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~------~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~ 132 (453)
T 4ffc_A 59 VDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHF------THTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFN 132 (453)
T ss_dssp EETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC------SCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEES
T ss_pred EeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhc------cccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeC
Confidence 344567899998773 3333 5899999999998753 223333455677777777776544443 58999999
Q ss_pred ChHHHHHH-HHHhc--CCCCEEEEeCCCChhhhhhHHHhCCcc--cccccccccceEEEeecCc----cCCcc-------
Q 045431 134 GAKCDISR-LQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTG--EFQKDAEKYGKIEYMRCTA----ENGFF------- 197 (433)
Q Consensus 134 G~~~al~~-l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~----~~~~~------- 197 (433)
|+++++.+ +.... ..++.|++.+++|+++......++... ....+......+..++... ..+..
T Consensus 133 sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (453)
T 4ffc_A 133 SGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARR 212 (453)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHH
Confidence 99999997 43332 356899999999998876666654321 1111111112344444431 10111
Q ss_pred --cCCCC--CCCccEEEEcCCCCccc--cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEE
Q 045431 198 --PDLST--VARTDIIFFCSPNNPTG--AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIE 271 (433)
Q Consensus 198 --~~~~~--~~~~~~i~l~~p~nPtG--~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~ 271 (433)
..+++ .++..++++++|.|++| .+.+.+.+++|.++|++||++||+||+|.++...+...........++
T Consensus 213 ~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pd---- 288 (453)
T 4ffc_A 213 AISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPD---- 288 (453)
T ss_dssp HHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----
T ss_pred HHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcc----
Confidence 01111 23455677789988877 455888999999999999999999999998866554332222222222
Q ss_pred EecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTD 350 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 350 (433)
+.||||.++ +|+|+||++++++++ +.+.......+.+.++++|+++.++++.... ..+++.++..+..++
T Consensus 289 i~t~sK~~~-~G~~~G~~~~~~~i~--------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 359 (453)
T 4ffc_A 289 IVTMAKGIA-GGMPLSAVTGRAELM--------DAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTS 359 (453)
T ss_dssp EEEECGGGG-TTSSCEEEEEEHHHH--------TTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHhhhhhhc-CCcCeEEEEECHHHH--------hhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 457999998 699999999998875 3333334455667899999999988863211 122333333333333
Q ss_pred HHHHHHhhcC-CeeecCCCccEEEEECCC--------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChh
Q 045431 351 IIVETFNSLG-FKVYGGKNAPYVWVQFPG--------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRG 419 (433)
Q Consensus 351 ~l~~~l~~~g-~~~~~~~~g~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~ 419 (433)
.+.+.+.++. +.... ..|.++|+.+.. ....++...+++ +||.+.|+..| .+++||++ ..+++
T Consensus 360 ~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~~~~~t~e 433 (453)
T 4ffc_A 360 RLSALAEEVDIIGEVR-GRGAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF----GNVIRLLPPLVIGDD 433 (453)
T ss_dssp HHHHHHHHCSSEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT----SCEEEECCCTTCCHH
T ss_pred HHHHHHhhCCCeEEEE-eeceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEECCCCCCHH
Confidence 4444444443 33333 357888888732 113445556555 59999997654 36899984 56899
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 434 ~i~~~l~~l~~~l 446 (453)
T 4ffc_A 434 LLDEGITALSDII 446 (453)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 134
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.97 E-value=2.1e-29 Score=248.09 Aligned_cols=348 Identities=8% Similarity=-0.035 Sum_probs=228.5
Q ss_pred CCCCceEEecCCC--CCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGD--TTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~--~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.+++..|||+.|. ..+ ..++.+.+++.+++.+... .|....+..+++.++++++.+..+.++++|++|+|++
T Consensus 48 ~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGs 122 (460)
T 3gju_A 48 NNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAY-----YHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGS 122 (460)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSC-----CCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHH
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc-----cccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchH
Confidence 4567789998772 223 3579999999999876431 2323345556777777777664566788999999999
Q ss_pred HHHHH-HHHhc--------CCCCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCc-----cCCcc----
Q 045431 137 CDISR-LQIVF--------GSNVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTA-----ENGFF---- 197 (433)
Q Consensus 137 ~al~~-l~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~---- 197 (433)
+++.+ +..+. .+++.|++.+|+|+++......++....+ ..++.....+..++... +.+..
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 99997 44444 35699999999999987666655432221 11111112334444221 10111
Q ss_pred -----cCCCC-----C-CCccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC
Q 045431 198 -----PDLST-----V-ARTDIIFFCSPNNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA 265 (433)
Q Consensus 198 -----~~~~~-----~-~~~~~i~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 265 (433)
.++++ . +++++|++..++|++|. +++.+++++|.++|++||+++|+||+|.++...+...........
T Consensus 203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~ 282 (460)
T 3gju_A 203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIK 282 (460)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence 11221 1 34455554444677776 778889999999999999999999999988665543322222222
Q ss_pred CcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHHhcCcCCh-h
Q 045431 266 KEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLACLSPEGF-K 336 (433)
Q Consensus 266 ~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~-~ 336 (433)
++ +.+|||+++ +| +|+||++++++++ +.+.. +....+.+.++++|+++.++|+.... .
T Consensus 283 pd----i~t~sK~l~-gG~~~lg~v~~~~~i~--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 349 (460)
T 3gju_A 283 PD----LITIAKGLT-SAYAPLSGVIVADRVW--------QVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMD 349 (460)
T ss_dssp CS----EEEECGGGT-TTSSCCEEEEEEHHHH--------HHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred CC----eeeeehhhc-CCCCCeEEEEECHHHH--------HHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 23 337899997 67 8999999998885 44532 13344566889999999988873211 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEEECCCCC------------hHHHHHHHHHcCCeEecCCCCCC
Q 045431 337 AVHEVIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFPGRS------------SWDVFSEILEKTHVVTTPGSGFG 403 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~~~------------~~~~~~~l~~~~gi~v~~g~~f~ 403 (433)
.+++.++..+..++.+.+.+++++ +....+ .|.++++.+.... ..++...++++ ||.+.|+.
T Consensus 350 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--- 424 (460)
T 3gju_A 350 LVTNAGETGAYFRAELAKAVGGHKNVGEVRG-DGMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP--- 424 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEee-eeEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC---
Confidence 355555566666666666666663 444443 5678888876211 33555666554 99999864
Q ss_pred CCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 404 PGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 404 ~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
..+++||+ +..+++++++++++|++++
T Consensus 425 --~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 453 (460)
T 3gju_A 425 --QGDILGFAPPLCLTREQADIVVSKTADAV 453 (460)
T ss_dssp --SSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34799999 5679999999999999876
No 135
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.97 E-value=2.6e-29 Score=240.91 Aligned_cols=322 Identities=11% Similarity=0.040 Sum_probs=214.2
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC--CcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE--GDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~--~~i~~~~G~~~al~~- 141 (433)
..+|+.|. .++|+.+.+++.+.+. ..|. .+..++.+++.+++.+.+++++ +.+++|+|+++++.+
T Consensus 20 ~~~~~pgp--~~~~~~v~~a~~~~~~--------~~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~ 87 (376)
T 3f0h_A 20 MLNFTVGP--VMSSEEVRAIGAEQVP--------YFRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAV 87 (376)
T ss_dssp CEECSSSS--CCCCHHHHHHHTSCCC--------CCSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHH
T ss_pred ceeecCCC--CCCcHHHHHHhcCCCC--------CCCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHH
Confidence 45555553 5678888888776432 1221 1334555555555554336654 345569999999997
Q ss_pred HHHhcCCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNN 216 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~n 216 (433)
+..++++||+|++++|+|.+.. ......| .+++.++.+.+..++.+ +++ .++++++++++|+|
T Consensus 88 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n 155 (376)
T 3f0h_A 88 VMNCFTKKDKVLVIDGGSFGHRFVQLCEIHE------------IPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDET 155 (376)
T ss_dssp HHHHCCTTCCEEEEESSHHHHHHHHHHHHTT------------CCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEET
T ss_pred HHhccCCCCeEEEEeCChhhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccC
Confidence 6778899999999999877744 2344445 36777777643333222 222 36789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceeeeeccccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGWTVIPKEL 295 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~l~~~~~~ 295 (433)
|||.+++ +++|.++|++||+++|+|++|+.+.. +..+... +..+++.|+||+++ .+| +|++++++++
T Consensus 156 ptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~---~~~~~~~----~~d~~~~s~~K~l~~~~G--~g~~~~~~~~ 223 (376)
T 3f0h_A 156 STAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLAD---PFNMNEC----GADVMITGSQKVLACPPG--ISVIVLAPRG 223 (376)
T ss_dssp TTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEETTTTTCCCSS--CEEEEECHHH
T ss_pred CcceecC---HHHHHHHHHHcCCEEEEEcCccccCc---ccccccc----CccEEEecCcccccCCCc--eEEEEECHHH
Confidence 9999999 88999999999999999999885432 2222222 23488999999997 445 7889888887
Q ss_pred cccCCcchhHHHHHH----------------H-hhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHh
Q 045431 296 LFSDGFPVAKDFNRI----------------V-CTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFN 357 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~ 357 (433)
+ +.+... . ......++...+.++.+++...... .+++.+++++++++++.+.|+
T Consensus 224 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 295 (376)
T 3f0h_A 224 V--------ERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIK 295 (376)
T ss_dssp H--------HHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred H--------HHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4 222210 0 0112234443333333333311112 468888899999999999999
Q ss_pred hcCCeeecCCCccE-EEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 358 SLGFKVYGGKNAPY-VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 358 ~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
++++.+..+..... +++..++.+..++...+.+++||.+.+|.. ....+++||++ +.+++++++++++|++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~--~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l 371 (376)
T 3f0h_A 296 DLPFELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGG--EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQ 371 (376)
T ss_dssp TSSEEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCG--GGTTTCEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred HcCCccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCcc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 88877765433332 333334556777888877767999999842 33467999996 458999999999999876
No 136
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.97 E-value=9.8e-30 Score=249.12 Aligned_cols=344 Identities=10% Similarity=0.058 Sum_probs=219.8
Q ss_pred CCCCceEEecCCCCC--CC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC-CcEEEcCCh
Q 045431 60 YPDAEVISLGIGDTT--EP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE-GDIFVSDGA 135 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~ 135 (433)
.++..++||+.+.+. +. .++.+.+++.+++.+. ..|+...+..++++++++++.+.++... ++|++|+|+
T Consensus 40 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg 113 (439)
T 3dxv_A 40 ENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP------AGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSG 113 (439)
T ss_dssp TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC------SCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSH
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc------cCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCH
Confidence 456678999988873 33 7899999999988653 2344455677888888888877555555 799999999
Q ss_pred HHHHHH-HHHh--cCCCCEEEEeCCCChhhhhhHHHhCCccc--cc-ccccccceEEEeecCccCCc------ccCCC--
Q 045431 136 KCDISR-LQIV--FGSNVTMAVQDPSYPAYVDSSVIMGQTGE--FQ-KDAEKYGKIEYMRCTAENGF------FPDLS-- 201 (433)
Q Consensus 136 ~~al~~-l~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~--~~-~~~~~~~~~~~~~~~~~~~~------~~~~~-- 201 (433)
++++.. +..+ +.+++.|++.+|+|++.......++.... +. .+......+..++.+..... ..+++
T Consensus 114 sea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 193 (439)
T 3dxv_A 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEK 193 (439)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHH
Confidence 999987 4433 34677899999999776654443332110 00 00000001223333211000 11111
Q ss_pred ---C-CCCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc
Q 045431 202 ---T-VARTDIIFFCSPNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 202 ---~-~~~~~~i~l~~p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s 276 (433)
. ..++++|+++.++|++|.+. +.+++++|.++|++||++||+||+|.++...+.+.........++ ++ |||
T Consensus 194 l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~d-i~---s~s 269 (439)
T 3dxv_A 194 LAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPD-IL---VLG 269 (439)
T ss_dssp HHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCS-EE---EEC
T ss_pred HHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCC-EE---EEc
Confidence 1 24566767666677888766 555599999999999999999999998765554333322222222 22 999
Q ss_pred ccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
|+++ +|+|+||++++++++ +.+.......+. .+++++.++.++++.... +...++++++++.+.+.|
T Consensus 270 K~~~-~G~riG~~~~~~~~~--------~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l 336 (439)
T 3dxv_A 270 KGLG-GGLPLSAVIAPAEIL--------DCASAFAMQTLH-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGL 336 (439)
T ss_dssp GGGG-TTSCCEEEEEEHHHH--------TSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHH
T ss_pred chhc-CCcceEEEEECHHHH--------hhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 9998 799999999998875 223222233445 788999888888763211 233444555555555555
Q ss_pred hh----cC-CeeecCCCccEEEEEC--------CC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhH
Q 045431 357 NS----LG-FKVYGGKNAPYVWVQF--------PG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGN 420 (433)
Q Consensus 357 ~~----~g-~~~~~~~~g~~~~~~~--------~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~ 420 (433)
++ ++ +.... ..|.++|+.+ +. ....++...++++ ||.+.|+.. ..+++||++ ..++++
T Consensus 337 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~iRi~~~~~~t~e~ 410 (439)
T 3dxv_A 337 SELAKRHPLIGDIR-GRGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGM----NGNVLEFTPPLTITETD 410 (439)
T ss_dssp HHHHHHCTTEEEEE-EETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEEST----TSCEEEECCCTTCCHHH
T ss_pred HHHHHhCCCeEEEE-EEEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCC----CCCEEEEECCCCCCHHH
Confidence 44 33 33333 3677888877 21 1234566666665 999999843 247899984 568999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 411 i~~~l~~l~~~l 422 (439)
T 3dxv_A 411 IHKALDLLDRAF 422 (439)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 137
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.97 E-value=3.4e-29 Score=240.78 Aligned_cols=331 Identities=12% Similarity=0.059 Sum_probs=223.9
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC--CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE--QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
.+.|+.|. .+.++.+.+++.+... ..|.+. ....++++.+++++....++++++|++|+|+++++.+
T Consensus 6 ~~~~~p~p--~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~ 75 (385)
T 2bkw_A 6 DTLLIPGP--IILSGAVQKALDVPSL--------GHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIF 75 (385)
T ss_dssp CEECSSSS--CCCCHHHHHTTSCCCC--------CTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHH
T ss_pred ceeecCCC--cCchHHHHHHHhcccc--------ccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHH
Confidence 45666653 4567777777655322 112121 2456788999999866555678999999999999997
Q ss_pred HHHhc---CCCCEEEEe-CCCChhhh-hhHHHhCCcccccccccccceEEEeec-CccCCcccC-CCC--CC-CccEEEE
Q 045431 142 LQIVF---GSNVTMAVQ-DPSYPAYV-DSSVIMGQTGEFQKDAEKYGKIEYMRC-TAENGFFPD-LST--VA-RTDIIFF 211 (433)
Q Consensus 142 l~~l~---~~gd~Vl~~-~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~--~~-~~~~i~l 211 (433)
+..++ ++||+|++. .|.|.... ..++..| .+++.++. +.+..++.+ +++ .+ ++++|++
T Consensus 76 ~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~ 143 (385)
T 2bkw_A 76 ASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYG------------AQVDVVRPLKIGESVPLELITEKLSQNSYGAVTV 143 (385)
T ss_dssp HHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTT------------CEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEE
T ss_pred HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcC------------CceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 56676 899999887 55665553 5566667 47888887 543222222 221 12 7899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHc--CCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccceee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDN--GSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRLGW 288 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~--~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~G~ 288 (433)
++|+||||.+++ +++|.++|++| |++||+|++|+... .+.++..+ +..+++.|+||+++ .+| +||
T Consensus 144 ~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~---~~~~~~~~----~~d~~~~s~~K~~~~~~G--~G~ 211 (385)
T 2bkw_A 144 THVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGC---EEFEFDEW----GVDFALTASQKAIGAPAG--LSI 211 (385)
T ss_dssp ESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTT---SCCCTTTT----TCSEEEEESSSTTCCCSC--EEE
T ss_pred EccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCC---cccccccc----CceEEEecCccccccCCc--ceE
Confidence 999999999998 77999999999 99999999998421 12222222 34588999999764 456 599
Q ss_pred eeccccccc-cCCc--------------chhHHHHHHHhhc---cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 289 TVIPKELLF-SDGF--------------PVAKDFNRIVCTC---FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 289 l~~~~~~~~-~~~~--------------~~~~~~~~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
++++++.+. .-.. ........+.... ....+...+.++.++++......+++++++++++++
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 291 (385)
T 2bkw_A 212 SLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSD 291 (385)
T ss_dssp EEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred EEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 999887752 1000 0000011111110 134566666666666542111236778889999999
Q ss_pred HHHHHH-hhcCCeeecC-----CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe-ec-----cCh
Q 045431 351 IIVETF-NSLGFKVYGG-----KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS-AF-----GHR 418 (433)
Q Consensus 351 ~l~~~l-~~~g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~-~~-----~~~ 418 (433)
++.+.| +++|+.+..+ ..++++|+.+++ ..++...|. ++||.+.+|..+. ..++++||+ +. .++
T Consensus 292 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~-~~gi~v~~g~~~~-~~~~~iRis~~~~~~~~~~~ 367 (385)
T 2bkw_A 292 WFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD--PPDVIAFLK-SHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNL 367 (385)
T ss_dssp HHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC--HHHHHHHHH-HTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTC
T ss_pred HHHHHHHHhcCceecccCcccccCCceEEEecCC--HHHHHHHHH-HCCeEEeCCCCcc-cCCCEEEEEccccccccCCH
Confidence 999999 8888887653 257889999875 566666665 5699999987653 245789999 64 489
Q ss_pred hHHHHHHHHHHHhhC
Q 045431 419 GNVLEACKRFKHLYK 433 (433)
Q Consensus 419 ~~l~~~l~~l~~~l~ 433 (433)
+++++++++|+++++
T Consensus 368 e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 368 PYMKNCFDLIKLALQ 382 (385)
T ss_dssp THHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
No 138
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.97 E-value=4.4e-29 Score=243.73 Aligned_cols=341 Identities=9% Similarity=-0.011 Sum_probs=220.6
Q ss_pred CCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+|++.+.+ ++. .++.+.+++.+++.+... .....|. .....++++.+++++ ++++++|++|+|+++
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~~~~~-~~~~~~l~~~la~~~----~~~~~~v~~~~ggte 114 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGIT-HAPAIELCRKLVAMT----PQPLECVFLADSGSV 114 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSEE-CHHHHHHHHHHHHHS----CTTCCEEEEESSHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-ccccccC-CHHHHHHHHHHHHhC----CCCCCEEEEeCCHHH
Confidence 4556889988763 333 589999999999875321 1112442 223456667777665 678899999999999
Q ss_pred HHHH-HHHhc---C----CCCEEEEeCCCChhhhhhHHHhCCcc--cccccccccceEEEeecCcc---CCc-ccC---C
Q 045431 138 DISR-LQIVF---G----SNVTMAVQDPSYPAYVDSSVIMGQTG--EFQKDAEKYGKIEYMRCTAE---NGF-FPD---L 200 (433)
Q Consensus 138 al~~-l~~l~---~----~gd~Vl~~~p~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~---~~~-~~~---~ 200 (433)
++.+ +..+. + |||+|++.+|+|+++.......+... ....+......+..++.+.. ..+ ..+ +
T Consensus 115 a~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 194 (429)
T 1s0a_A 115 AVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHH
Confidence 9987 44332 2 69999999999988654333222100 00000000012334443210 011 112 2
Q ss_pred CC--C---CCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEE
Q 045431 201 ST--V---ARTDIIFFCSP--NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIET 272 (433)
Q Consensus 201 ~~--~---~~~~~i~l~~p--~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i 272 (433)
++ . +++++ ++++| |||||. ..+.+++++|.++|++||+++|+||+|.++...+....+.... ...++
T Consensus 195 ~~~l~~~~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~-~~~d~--- 269 (429)
T 1s0a_A 195 ARLMAAHRHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAE-IAPDI--- 269 (429)
T ss_dssp HHHHHHHTTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGT-CCCSE---
T ss_pred HHHHHhCCCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcC-CCCCE---
Confidence 11 1 24444 55666 589996 5578889999999999999999999999875544322222222 12222
Q ss_pred ecccccccccc-cceeeeeccccccccCCcchhHHHHHH-----HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 045431 273 SSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI-----VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346 (433)
Q Consensus 273 ~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 346 (433)
.||||.++ +| +|+||++++++++ +.+... ....+...+++++.++.++++.... +...++++
T Consensus 270 ~t~sK~l~-~G~~~iG~~~~~~~~~--------~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~---~~~~~~~~ 337 (429)
T 1s0a_A 270 LCLGKALT-GGTMTLSATLTTREVA--------ETISNGEAGCFMHGPTFMGNPLACAAANASLAILES---GDWQQQVA 337 (429)
T ss_dssp EEECGGGG-TSSSCCEEEEECHHHH--------HHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHH
T ss_pred EEeccccc-CCCccceEEEeCHHHH--------HHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHH
Confidence 37999998 78 9999999998774 444432 1223445688999888888762111 23556777
Q ss_pred HHHHHHHHHHhhc----CCeeecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChh
Q 045431 347 ENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRG 419 (433)
Q Consensus 347 ~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~ 419 (433)
++++++.+.|+++ ++....+ .|+++|++++. .+..++...+++ +||.+.|. .+++||+ +..+++
T Consensus 338 ~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~-------~~~iRis~~~~~t~e 408 (429)
T 1s0a_A 338 DIEVQLREQLAPARDAEMVADVRV-LGAIGVVETTHPVNMAALQKFFVE-QGVWIRPF-------GKLIYLMPPYIILPQ 408 (429)
T ss_dssp HHHHHHHHHHGGGGGCTTEEEEEE-ETTEEEEEESSCBCHHHHHHHHHH-TTEECCCB-------TTEEEECCCTTCCHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEE-eeEEEEEEECCcccHHHHHHHHHH-CCCEEecc-------CCEEEEECCCCCCHH
Confidence 8888888888775 3433333 46789999874 456667777765 59999873 2689999 467999
Q ss_pred HHHHHHHHHHHhhC
Q 045431 420 NVLEACKRFKHLYK 433 (433)
Q Consensus 420 ~l~~~l~~l~~~l~ 433 (433)
++++++++|+++++
T Consensus 409 ~i~~~~~~l~~~~~ 422 (429)
T 1s0a_A 409 QLQRLTAAVNRAVQ 422 (429)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
No 139
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.97 E-value=4.5e-29 Score=245.61 Aligned_cols=348 Identities=9% Similarity=-0.023 Sum_probs=224.2
Q ss_pred cCCCCceEEecCC--CCCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIG--DTTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g--~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..|||+.| ...+ ..++.+.+++.+++.+.. ..|....+..+++.++++++.+.++.+.++|++|+|+
T Consensus 46 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gg 120 (459)
T 4a6r_A 46 DSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELP-----FYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSG 120 (459)
T ss_dssp ETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCS-----CCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSH
T ss_pred ECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcc-----ccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCch
Confidence 3456678999877 3333 357999999999987632 1233334556777777777776557778899999999
Q ss_pred HHHHHH-HHHhcC--------CCCEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCc--c-CCc------
Q 045431 136 KCDISR-LQIVFG--------SNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTA--E-NGF------ 196 (433)
Q Consensus 136 ~~al~~-l~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~--~-~~~------ 196 (433)
++++.. +..++. +++.|++.+|+|+++......++....+. .+......+..++... . +..
T Consensus 121 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 200 (459)
T 4a6r_A 121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEF 200 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHH
Confidence 999997 444443 57999999999999887666665432211 1111112333444211 0 000
Q ss_pred ----ccCCCC-----CCCccEEEEcCCC-Ccccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC
Q 045431 197 ----FPDLST-----VARTDIIFFCSPN-NPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA 265 (433)
Q Consensus 197 ----~~~~~~-----~~~~~~i~l~~p~-nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 265 (433)
..++++ .++..++++++|. |++|. +++.+++++|.++|++||+++|+||+|.+|...+...........
T Consensus 201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 280 (459)
T 4a6r_A 201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQ 280 (459)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence 111221 1133345556664 45555 559999999999999999999999999988666543322223222
Q ss_pred CcceEEEecccccccccccceeeeeccccccccCCcchhHHHH---HHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHH
Q 045431 266 KEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFN---RIVCTCFNGASNISQAGGLACLSPEGF-KAVHEV 341 (433)
Q Consensus 266 ~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~ 341 (433)
++ +.+|||.++.+|+|+||++++++++ +.+. ......+.+.++++|+++.++|+.... ..+++.
T Consensus 281 pd----i~t~sK~l~gg~~~lg~v~~~~~i~--------~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 348 (459)
T 4a6r_A 281 PD----LFTAAKGLSSGYLPIGAVFVGKRVA--------EGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRV 348 (459)
T ss_dssp CS----EEEECGGGGTTSSCCEEEEECHHHH--------HHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CC----eeehhhhhcCCCCCccceeeCHHHH--------HHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHH
Confidence 23 3378999974449999999998885 5554 334445566889999999998873211 223443
Q ss_pred H-HHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECCCCC------------hHHHHHHHHHcCCeEecCCCCCCCCCC
Q 045431 342 I-GFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRS------------SWDVFSEILEKTHVVTTPGSGFGPGGE 407 (433)
Q Consensus 342 ~-~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~------------~~~~~~~l~~~~gi~v~~g~~f~~~~~ 407 (433)
+ +.....++.+.+.|.++ .+....+ .|.++++.+.... ..++...++++ ||.+.|+.
T Consensus 349 ~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g------- 419 (459)
T 4a6r_A 349 KDDIGPYMQKRWRETFSRFEHVDDVRG-VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NLIMRACG------- 419 (459)
T ss_dssp HHTHHHHHHHHHHHHHTTCTTEEEEEE-ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TEECEEET-------
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEE-EEEEEEEEEecCccccccccchHHHHHHHHHHHHHC-CeEEecCC-------
Confidence 3 33334444444445544 3444443 5678888775211 34566666655 99999862
Q ss_pred CeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 408 GFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 408 ~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+++||+ +..+++++++++++|++++
T Consensus 420 ~~iRi~~~~~~t~e~i~~~l~~l~~~l 446 (459)
T 4a6r_A 420 DHIVSAPPLVMTRAEVDEMLAVAERCL 446 (459)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 689999 5679999999999999876
No 140
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.96 E-value=6.3e-29 Score=237.14 Aligned_cols=327 Identities=11% Similarity=0.115 Sum_probs=218.1
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccC-CC---CCCCCCCCCCHHHHHHHHHHHhccCCCCCC-c-EEEcCChHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQ-EG---YSGYGAEQGEKPLRAAIASTFYKDLGIEEG-D-IFVSDGAKCD 138 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~-~-i~~~~G~~~a 138 (433)
++.+..|. .++|+.+.+++.+.+.+.... .. ...|+ .+..++++++.+.+.+.++++++ + |++|+|++++
T Consensus 5 ~~l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a 80 (362)
T 2c0r_A 5 AYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHRG--AVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQ 80 (362)
T ss_dssp CEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTS--HHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHH
T ss_pred eeeccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCCc--HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHH
Confidence 56666663 578999999999987543110 00 11221 23455666777776665677664 6 5788999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCChhh--hhhHHHhCCcccccccccccceEEEeecCc--cCCcccCCC---CCCCccEEE
Q 045431 139 ISR-LQIVFGSNVTMAVQDPSYPAY--VDSSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENGFFPDLS---TVARTDIIF 210 (433)
Q Consensus 139 l~~-l~~l~~~gd~Vl~~~p~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~i~ 210 (433)
+.+ +..++++||+|++.++.+... ...++..| . ++.++.+. +.+...+++ -.+++++|+
T Consensus 81 ~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~------------~~~v~~~~~~~~~~~~~~~~~~i~~~t~~v~ 147 (362)
T 2c0r_A 81 FAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-D------------THVAASSEASNYMTLPKLQEIQLQDNAAYLH 147 (362)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-C------------EEEEEECGGGTTCSCCCGGGCCCCTTEEEEE
T ss_pred HHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-C------------eEEEecccccccccCCCHHHcccCCCcCEEE
Confidence 997 678889999999887765543 34555566 2 44455442 122222222 246789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 211 FCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 211 l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
+++|+||||++++ ++++| +|+++|+|++|+.+.. +.++.. . .+++.|+||++|++| +||++
T Consensus 148 ~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~---~~~~~~---~---d~~~~s~~K~~g~~G--~G~l~ 208 (362)
T 2c0r_A 148 LTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSR---PFDLNQ---F---GLVYAGAQKNLGPSG--VTVVI 208 (362)
T ss_dssp EESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSS---CCCGGG---C---SEEEEETTTTTCCSS--CEEEE
T ss_pred EeCCcCccceecc--ccccc------CCCEEEEEChhhccCC---ccchhH---C---cEEEEeccccccCcC--cEEEE
Confidence 9999999999755 25554 8999999999985422 222222 1 377889999999778 99999
Q ss_pred ccccccccCCcc--hhHHHHH--HHhhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcC-C-ee
Q 045431 291 IPKELLFSDGFP--VAKDFNR--IVCTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLG-F-KV 363 (433)
Q Consensus 291 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g-~-~~ 363 (433)
++++++..-.+. ..-.+.. .......+++.+.|.++.++++..... ++++++++++++++++.+.|+++| + .+
T Consensus 209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 288 (362)
T 2c0r_A 209 VREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRG 288 (362)
T ss_dssp EEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEE
T ss_pred EcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 998886321110 0000110 011223456778888888777632222 578899999999999999999987 6 66
Q ss_pred ecC---CCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 364 YGG---KNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 364 ~~~---~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
..+ ..+.++|+.++. .+..++...| +++||.+.+|..| .+++|||++ .++++++++++.|++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gi~~~~g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~~ 358 (362)
T 2c0r_A 289 CVDVDSRSDMNITFRLASEELEKEFVKAS-EQEGFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHFK 358 (362)
T ss_dssp SSCGGGBCSSEEEEECSCHHHHHHHHHHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCChHHcCCcEEEEEcCCcchHHHHHHHH-HHCCCeeccCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 421 245678888873 3445666665 4559999988765 357999975 37999999999998875
No 141
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=1.3e-28 Score=239.34 Aligned_cols=328 Identities=13% Similarity=0.121 Sum_probs=219.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC-CCC--CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS-GYG--AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~Y~--~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
+.+.|+.+.+. +.|+.+.+++.+.+.......... .|. ......++++.+++++ ++++++|++|+|+++++.
T Consensus 28 ~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~al~ 102 (416)
T 1qz9_A 28 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI----GARDGEVVVTDTTSINLF 102 (416)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT----TCCTTSEEECSCHHHHHH
T ss_pred CeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc----CCCcccEEEeCChhHHHH
Confidence 47888888766 678889999999886421000000 111 1234456777777765 788899999999999997
Q ss_pred H-HHHhc------CCCCE-EEEeCCCChhhhhhHHH----h--CCcccccccccccceEEEeecCccCCcccCCCCCCCc
Q 045431 141 R-LQIVF------GSNVT-MAVQDPSYPAYVDSSVI----M--GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVART 206 (433)
Q Consensus 141 ~-l~~l~------~~gd~-Vl~~~p~~~~~~~~~~~----~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (433)
+ +..++ ++||+ |++..++|+.+...+.. . | .+++.++. . ..+...+ .+++
T Consensus 103 ~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~-~-~~l~~~i--~~~~ 166 (416)
T 1qz9_A 103 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQG------------YTLRLVDS-P-EELPQAI--DQDT 166 (416)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSS------------CEEEEESS-G-GGHHHHC--STTE
T ss_pred HHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCC------------ceEEEeCc-H-HHHHHHh--CCCc
Confidence 5 55555 89997 45556688765544332 2 5 36677765 1 1111111 2478
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
++|++++|+||||.+++ +++|.++|++||+++|+|++|+.. ..+.++..+. ..+++.|+||+++ +|.++
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g---~~~~~~~~~~----~d~~~~s~~K~l~-~g~~~ 235 (416)
T 1qz9_A 167 AVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAG---AVPVDLHQAG----ADYAIGCTYKYLN-GGPGS 235 (416)
T ss_dssp EEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTT---TSCCCHHHHT----CSEEEECSSSTTC-CCTTC
T ss_pred eEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEcccccc---CcCCChhhcC----CCEEEecCcccCC-CCCCC
Confidence 99999999999999998 789999999999999999999831 1122332321 2488999999984 78888
Q ss_pred -eeeeccccccccCCcchhHHHHH---------------HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHH
Q 045431 287 -GWTVIPKELLFSDGFPVAKDFNR---------------IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 287 -G~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
||++++++++..-.+........ .......+.+...+.++.++++.....++++++++++++++
T Consensus 236 ~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 315 (416)
T 1qz9_A 236 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTD 315 (416)
T ss_dssp CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999988752211100000000 00112223566666655555542222346788899999999
Q ss_pred HHHHHHhhc----CCeeecCC----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cChh
Q 045431 351 IIVETFNSL----GFKVYGGK----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHRG 419 (433)
Q Consensus 351 ~l~~~l~~~----g~~~~~~~----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~ 419 (433)
++.+.|++. |+.+..+. .+.++|+.++. ..++...+. ++||.+.. .+.+++||++. .+++
T Consensus 316 ~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~-~~gi~~~~------~~~~~lRis~~~~~~t~~ 386 (416)
T 1qz9_A 316 LFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--GYAVIQALI-DRGVIGDY------REPRIMRFGFTPLYTTFT 386 (416)
T ss_dssp HHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--HHHHHHHHH-TTTEECEE------ETTTEEEEECCTTTCCHH
T ss_pred HHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC--HHHHHHHHH-hCCcEecc------CCCCeEEEeCcccCCCHH
Confidence 999999886 88887653 35789999874 556666665 55998753 13578999975 4899
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 387 ~i~~~~~~l~~~~ 399 (416)
T 1qz9_A 387 EVWDAVQILGEIL 399 (416)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 142
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.96 E-value=4e-29 Score=245.30 Aligned_cols=347 Identities=10% Similarity=0.013 Sum_probs=223.6
Q ss_pred hcCCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCcEEEcC
Q 045431 58 LKYPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGDIFVSD 133 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~i~~~~ 133 (433)
...+++..|||..+. ..+. .++.+.+++.+++.+. ..|....+..+++.++++++.+..+. .+++|++|+
T Consensus 56 ~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~------~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~ 129 (451)
T 3oks_A 56 EDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF------THTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFN 129 (451)
T ss_dssp EETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC------SCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEES
T ss_pred EECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc------ccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeC
Confidence 344567789998773 3333 5899999999998642 23433445667777888877764443 357999999
Q ss_pred ChHHHHHH-HHHhc--CCCCEEEEeCCCChhhhhhHHHhCCcc--cccccccccceEEEeecCcc--C---Ccc------
Q 045431 134 GAKCDISR-LQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTG--EFQKDAEKYGKIEYMRCTAE--N---GFF------ 197 (433)
Q Consensus 134 G~~~al~~-l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~--~---~~~------ 197 (433)
|+++++.+ +.... ..++.|++.+++|+++......++... ....+......+..++.... . +..
T Consensus 130 sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 209 (451)
T 3oks_A 130 SGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGE 209 (451)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHH
T ss_pred cHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhH
Confidence 99999997 43333 345899999999998876666554321 11111111124445554310 0 000
Q ss_pred cCC-------CC--CCCccEEEEcCCCCccc--cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCC
Q 045431 198 PDL-------ST--VARTDIIFFCSPNNPTG--AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAK 266 (433)
Q Consensus 198 ~~~-------~~--~~~~~~i~l~~p~nPtG--~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 266 (433)
.++ ++ .++..++++++|.|++| ...+.+.+++|.++|++||++||+||+|.++...+.......+...+
T Consensus 210 ~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~p 289 (451)
T 3oks_A 210 LAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDP 289 (451)
T ss_dssp HHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCC
Confidence 001 11 12445567778877666 44577789999999999999999999999876655433333332222
Q ss_pred cceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 045431 267 EVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346 (433)
Q Consensus 267 ~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 346 (433)
+ +.||||.++ +|+|+||++++++++ +.+.......+.+.++++|+++.++++.... +++.++++
T Consensus 290 d----i~t~sK~l~-~G~~iG~v~~~~~~~--------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~ 353 (451)
T 3oks_A 290 D----LIVTAKGIA-GGLPLSAVTGRAEIM--------DSPHVSGLGGTYGGNPIACAAALATIETIES---EGLVARAQ 353 (451)
T ss_dssp S----EEEECGGGG-TTSSCEEEEEEHHHH--------TCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred C----eeeehhhhh-CCcceEEEEECHHHH--------hhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHH
Confidence 2 338999998 699999999998875 3333334455667899999999988863211 23344444
Q ss_pred HHHHHHHHHHh----hcC-CeeecCCCccEEEEECCC--------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe
Q 045431 347 ENTDIIVETFN----SLG-FKVYGGKNAPYVWVQFPG--------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS 413 (433)
Q Consensus 347 ~~~~~l~~~l~----~~g-~~~~~~~~g~~~~~~~~~--------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~ 413 (433)
++.+++.+.|+ ++. +.... ..|.++|+.+.. ....++...+++ +||.+.|+..| .+++||+
T Consensus 354 ~~~~~l~~~L~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~ 427 (451)
T 3oks_A 354 QIEKIMKDRLGRLQAEDDRIGDVR-GRGAMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTY----GNVVRFL 427 (451)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT----SCEEEEC
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEE-EeeEEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCC----CCEEEEE
Confidence 44444444444 443 33333 357788888732 113445556554 59999997654 3689998
Q ss_pred e--ccChhHHHHHHHHHHHhh
Q 045431 414 A--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 414 ~--~~~~~~l~~~l~~l~~~l 432 (433)
+ ..+++++++++++|++++
T Consensus 428 ~~~~~t~e~i~~~l~~l~~~l 448 (451)
T 3oks_A 428 PPLSIGDDLLNEGLDVLEEVL 448 (451)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 4 558999999999999876
No 143
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.96 E-value=2.5e-28 Score=235.26 Aligned_cols=314 Identities=15% Similarity=0.129 Sum_probs=219.1
Q ss_pred CCCCCCC-h---HHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh
Q 045431 71 GDTTEPI-P---EVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV 145 (433)
Q Consensus 71 g~~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l 145 (433)
++|+++. | +.+.+++.+.+.. ....|.+..+..+||+++++++ +.+ ++|++++| ++++.+ +..+
T Consensus 5 ~~p~f~~~p~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~l~~~la~~~----~~~-~~i~~~sG-t~al~~~l~~l 73 (388)
T 1b9h_A 5 KAPEFPAWPQYDDAERNGLVRALEQ-----GQWWRMGGDEVNSFEREFAAHH----GAA-HALAVTNG-THALELALQVM 73 (388)
T ss_dssp CCCCCCCSSCCCHHHHHHHHHHHHT-----SCCBTTTCSHHHHHHHHHHHHT----TCS-EEEEESCH-HHHHHHHHHHT
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHc-----CCeeecCCHHHHHHHHHHHHHh----CCC-eEEEeCCH-HHHHHHHHHHc
Confidence 4667775 6 8999999998864 1234666778999999999998 554 67888887 788887 5777
Q ss_pred -cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEEcCCCCccc
Q 045431 146 -FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFFCSPNNPTG 219 (433)
Q Consensus 146 -~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l~~p~nPtG 219 (433)
+++||+|+++.|+|+++...++..| .+++.++++++ ++..+++ + .+++++|+ |+||||
T Consensus 74 ~~~~gd~Vi~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG 137 (388)
T 1b9h_A 74 GVGPGTEVIVPAFTFISSSQAAQRLG------------AVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAG 137 (388)
T ss_dssp TCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGG
T ss_pred CCCCcCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCcc
Confidence 7999999999999999999988888 47888888653 2222322 1 24677655 999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 220 AAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 220 ~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
.+.+ +++|.++|++||++||+|++|+. ..+.+ .++..+ . ++++.||||..+++|.|.||++++++.+..
T Consensus 138 ~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~~~--~~~~~~---~--~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~ 207 (388)
T 1b9h_A 138 LMAD---MDALAKISADTGVPLLQDAAHAHGARWQG--KRVGEL---D--SIATFSFQNGKLMTAGEGGAVVFPDGETEK 207 (388)
T ss_dssp CCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETT--EEGGGS---S--SCEEEECCTTSSSCSSSCEEEEECTTCHHH
T ss_pred CcCC---HHHHHHHHHHcCCEEEEecchhcCCccCC--eecccc---c--ceEEEEccCCCcccCCCeEEEEECCHHHHH
Confidence 9987 78899999999999999999985 33322 222222 1 478889996666667799999998763200
Q ss_pred CCcchhHHHHHHHhh---------------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe
Q 045431 299 DGFPVAKDFNRIVCT---------------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK 362 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~---------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 362 (433)
.+.+...... .....+.+...++... .+++++..++++++++++.+.|+++ |+.
T Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~-----~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 277 (388)
T 1b9h_A 208 -----YETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ-----LARLDEQIAVRDERWTLLSRLLGAIDGVV 277 (388)
T ss_dssp -----HHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred -----HHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 0222221110 0011233332222222 2346778888899999999999987 787
Q ss_pred eec------CCCccEEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCC----------CC-----------------
Q 045431 363 VYG------GKNAPYVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGP----------GG----------------- 406 (433)
Q Consensus 363 ~~~------~~~g~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~----------~~----------------- 406 (433)
+.. +.+++++|+.+++. +..++...|.+ +||.+.++..-.. ..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (388)
T 1b9h_A 278 PQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVE-AGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAIS 356 (388)
T ss_dssp ECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHH-TTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHH
T ss_pred ccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHH-CCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHH
Confidence 764 24578999999864 34556666655 5999987653100 00
Q ss_pred CCeEEEee--cc-ChhHHHHHHHHHHHhh
Q 045431 407 EGFIRVSA--FG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 407 ~~~iRi~~--~~-~~~~l~~~l~~l~~~l 432 (433)
.+.+||++ .. +++|++..++.|++++
T Consensus 357 ~~~l~l~~~~~~~t~edi~~~~~~l~~~~ 385 (388)
T 1b9h_A 357 SDCVWLHHRVLLAGEPELHATAEIIADAV 385 (388)
T ss_dssp HHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred hCeEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 13599996 45 7999999999998875
No 144
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.96 E-value=2.1e-29 Score=246.76 Aligned_cols=323 Identities=14% Similarity=0.139 Sum_probs=212.2
Q ss_pred ceEEecCC-CCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHH
Q 045431 64 EVISLGIG-DTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRL 142 (433)
Q Consensus 64 ~~i~l~~g-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l 142 (433)
.+|+++.| +++++.|+.+.++......... ....+.|+ ..|.+ +++++++++.+.++.+ ++++++|+++++.++
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~-~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~ 164 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAI-ENGPYDYT-RSGNP-TRDALESLLAKLDKAD--RAFCFTSGMAALSAV 164 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSS-CCCSCSBT-TTCCH-HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhccc-ccCCcccc-CCCCH-HHHHHHHHHHHHhCCC--eEEEECCHHHHHHHH
Confidence 46888887 7777777777666554311111 13345675 45666 7888888887644543 666677778898876
Q ss_pred HHhcCCCCEEEEeCCCChhhhhhH----HHhCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCcc
Q 045431 143 QIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPT 218 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPt 218 (433)
..++++||+|++++|+|+++...+ +..| .+++.++.++...+...+ .+++++|++++|+|||
T Consensus 165 l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G------------~~v~~v~~~d~~~l~~~i--~~~tk~v~l~~p~Npt 230 (464)
T 1ibj_A 165 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG------------VVVKRVNTTKLDEVAAAI--GPQTKLVWLESPTNPR 230 (464)
T ss_dssp HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGT------------CEEEEECTTSHHHHHHHC--CSSEEEEEECSSCTTT
T ss_pred HHHhCCCCEEEEECCCchhHHHHHHHHHHHcC------------CEEEEeCCCCHHHHHHHh--ccCceEEEEeCCCCCC
Confidence 568899999999999999987643 3445 367777764211111111 2578999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc-ccceeeeeccc-ccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT-GVRLGWTVIPK-ELL 296 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~-G~r~G~l~~~~-~~~ 296 (433)
|.+++ +++|+++|++||+++|+||+|+.... ..++ .+ ++++++.|+||+++.+ |+|+||+++++ +++
T Consensus 231 G~v~~---l~~i~~la~~~gi~livDea~~~g~~---~~~~-~~----~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~ 299 (464)
T 1ibj_A 231 QQISD---IRKISEMAHAQGALVLVDNSIMSPVL---SRPL-EL----GADIVMHSATKFIAGHSDVMAGVLAVKGEKLA 299 (464)
T ss_dssp CCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT---CCGG-GT----TCSEEEEETTTTTTCSSCCCCEEEEECSHHHH
T ss_pred CEeec---HHHHHHHHHHcCCEEEEECCCccccc---CChh-hc----CCEEEEECCcccccCCCCCcEEEEEEChHHHH
Confidence 99997 88999999999999999999985211 1122 12 3569999999988633 89999999986 453
Q ss_pred ccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh--------------c-CC
Q 045431 297 FSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS--------------L-GF 361 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--------------~-g~ 361 (433)
+.+...........+.+.|.++.+.++... ..+++. .++...+.+.+++ + ++
T Consensus 300 --------~~l~~~~~~~g~~~~~~~~~a~~~al~~~~-~r~~~~----~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~ 366 (464)
T 1ibj_A 300 --------KEVYFLQNSEGSGLAPFDCWLCLRGIKTMA-LRIEKQ----QENARKIAMYLSSHPRVKKVYYAGLPDHPGH 366 (464)
T ss_dssp --------HHHHHHHHHTTCBCCHHHHHHHHHHHTTHH-HHHHHH----HHHHHHHHHHHHTCTTCCEEECTTSTTSTTH
T ss_pred --------HHHHHHHHhcCCCCCHHHHHHHHhchhhHH-HHHHHH----HHHHHHHHHHHHhCCCceEEECCCCCCCcch
Confidence 556555443444567888888888876321 112222 2222233333332 2 34
Q ss_pred eeecCC---CccEEEEECCCCChH-HHHHHHHHcCCeEecCCC------------CCCC---------CCCCeEEEeecc
Q 045431 362 KVYGGK---NAPYVWVQFPGRSSW-DVFSEILEKTHVVTTPGS------------GFGP---------GGEGFIRVSAFG 416 (433)
Q Consensus 362 ~~~~~~---~g~~~~~~~~~~~~~-~~~~~l~~~~gi~v~~g~------------~f~~---------~~~~~iRi~~~~ 416 (433)
.+..+. .|.++|+.+++.... .+... ++..||.+.+|. .++. ..++++||++..
T Consensus 367 ~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~-L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~ 445 (464)
T 1ibj_A 367 HLHFSQAKGAGSVFSFITGSVALSKHLVET-TKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI 445 (464)
T ss_dssp HHHTTTCSCCCSEEEEECSCHHHHHHHHHH-CSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS
T ss_pred HHHhccCCCCceEEEEEECCHHHHHHHHHh-cCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC
Confidence 444332 356888988532222 23333 345699998886 1211 125789999866
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
+++++++++|++++
T Consensus 446 --edi~~li~~L~~al 459 (464)
T 1ibj_A 446 --EDVDDLISDLDIAF 459 (464)
T ss_dssp --SCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHH
Confidence 89999999998876
No 145
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.96 E-value=5.4e-30 Score=244.17 Aligned_cols=325 Identities=13% Similarity=0.020 Sum_probs=214.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
..+.++.+++++++++.+.+++.+.+ ....|++..+..+|++.+++++ +.+. .|++ +|+++++.+ +
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~~-------~~~~~~~~~~~~~l~~~la~~~----~~~~-~i~~-~~g~~a~~~a~ 80 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDNL-------ESDIYGNGAVIEDFETKIAKIL----GKQS-AVFF-PSGTMAQQIAL 80 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTTC-------BCCBTTBSHHHHHHHHHHHHHH----TCSE-EEEE-SCHHHHHHHHH
T ss_pred chhhcCCCccccCCCHHHHHHHHhhc-------ccCcccCCHHHHHHHHHHHHHh----CCCc-EEEe-CCHHHHHHHHH
Confidence 34666777766666788887777732 2235667778899999999997 5543 3555 666778776 6
Q ss_pred HHhcCCCCE--EEEeCCCChhhhhh---HHHhCCcccccccccccceEEEeecCccCCcccC-CCC-CCCccEEEEcCCC
Q 045431 143 QIVFGSNVT--MAVQDPSYPAYVDS---SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-VARTDIIFFCSPN 215 (433)
Q Consensus 143 ~~l~~~gd~--Vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~l~~p~ 215 (433)
..++.+||. |+++.+.|...... ....| .+++.++.+. ..++.+ +++ .+++++|++++||
T Consensus 81 ~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~~~~~~~v~~~~p~ 147 (359)
T 3pj0_A 81 RIWADRKENRRVAYHPLSHLEIHEQDGLKELQQ------------ITPLLLGTAN-QLLTIDDIKSLREPVSSVLIELPQ 147 (359)
T ss_dssp HHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHC------------CEEEECSCTT-SCCCHHHHHTCSSCCSEEEEESSB
T ss_pred HHHHhcCCCcEEEEeccceeeehhcchHHHhcC------------ceEEecCCcC-CCcCHHHHHhccCCceEEEEEecc
Confidence 777788886 55555555443322 13456 3677776632 222221 222 4678999999999
Q ss_pred Ccc-ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 216 NPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 216 nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
||| |.+++.+++++|+++|++||++||+|++|..+.......+...+....+ +++.||||+++.+ .. ||++++++
T Consensus 148 n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~~~~~-~g-g~~~~~~~ 223 (359)
T 3pj0_A 148 REIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFD--SVYVSFYKGIGGI-AG-AILAGNDD 223 (359)
T ss_dssp GGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCS--EEEEESSSTTCCS-SC-EEEEECHH
T ss_pred cCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCC--EEEEeccccCCCc-ce-EEEECCHH
Confidence 998 7999999999999999999999999999875432110111222211122 5566899998744 33 78888887
Q ss_pred ccccCCcchhHHHHHHHhhcc--CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeee-cCCCcc
Q 045431 295 LLFSDGFPVAKDFNRIVCTCF--NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVY-GGKNAP 370 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~ 370 (433)
++ +.+........ .......+.++...+++ +. +..+++.++++.+.+.|+++ |+.+. .+..++
T Consensus 224 l~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~ 290 (359)
T 3pj0_A 224 FV--------QEAKIWKRRYGGDLISLYPYILSADYYFEK----RI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSN 290 (359)
T ss_dssp HH--------HHHHHHHHHTTCCCSCCHHHHHHHHHHHHH----HG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSS
T ss_pred HH--------HHHHHHHHHhCCCcchhHHHHHHHHHHHHH----HH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcce
Confidence 75 55554332221 11223333333344432 12 33345678888999999998 88885 567888
Q ss_pred EEEEECCCC---ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-----cChhHHHHHHHHHHHhh
Q 045431 371 YVWVQFPGR---SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-----GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 371 ~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-----~~~~~l~~~l~~l~~~l 432 (433)
++|+.++.. +..++.+.+ .++||.+.||..|+..+.+++|+++. .+.+++++++++|.+.+
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~l-~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 291 MFHVYFENSADEIGAILTKIQ-DETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp EEEEEESSCHHHHHHHHHHHH-HHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred EEEEEecCccchhHHHHHHHH-HhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 899988732 233444454 55699999998876656678999863 47899999999998864
No 146
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.96 E-value=8.5e-29 Score=242.01 Aligned_cols=339 Identities=7% Similarity=0.018 Sum_probs=225.6
Q ss_pred CCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...|||..|.+ .+. .++.+.+++.+++.+... ....| +.....++++.+++++ + .++|++++|++
T Consensus 73 ~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~sGs 143 (439)
T 2oat_A 73 VEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTL--TSRAF-YNNVLGEYEEYITKLF----N--YHKVLPMNTGV 143 (439)
T ss_dssp TTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EESSHHHHHHHHHHHH----T--CSEEEEESSHH
T ss_pred CCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCc--ccCcc-CCHHHHHHHHHHHHhc----C--CCEEEEeCCHH
Confidence 34567899988754 354 789999999999875321 11123 3345678888888876 4 57999999999
Q ss_pred HHHHH-HHHhc---------CCC-CEEEEeCCCChhhhh-hHHHhCCcccccccccccceEEEeecCccCCcccCCCCCC
Q 045431 137 CDISR-LQIVF---------GSN-VTMAVQDPSYPAYVD-SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA 204 (433)
Q Consensus 137 ~al~~-l~~l~---------~~g-d~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (433)
+++.+ +..+. .+| |.|++.+|+|++... .+...|.......++.....+..++.++...+...++ .+
T Consensus 144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~-~~ 222 (439)
T 2oat_A 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-DP 222 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTT-ST
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhC-CC
Confidence 99987 44332 367 899999999987643 3333331100000111112455555532111111121 24
Q ss_pred CccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++|+ ++| +|++|. .++.+++++|.++|++||+++|+||+|.++...+....+......+| ++ ||||.++ +
T Consensus 223 ~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~D-i~---t~sK~l~-~ 296 (439)
T 2oat_A 223 NVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD-IV---LLGKALS-G 296 (439)
T ss_dssp TEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-EE---EECGGGG-T
T ss_pred CEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCc-EE---Eeccccc-C
Confidence 566555 556 577896 56899999999999999999999999987765553322222221233 22 9999998 7
Q ss_pred c-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 283 G-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 283 G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
| +|+||++++++++ +.+.......+.+.+++++.++.++++.... ++..++++++++++.+.|+++++
T Consensus 297 G~~~~G~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~ 365 (439)
T 2oat_A 297 GLYPVSAVLCDDDIM--------LTIKPGEHGSTYGGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMKLPS 365 (439)
T ss_dssp TSSCCEEEEECHHHH--------TTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTSCT
T ss_pred CCCCeEEEEECHHHH--------hccCCCCcccCCCcCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHhcC
Confidence 8 9999999998875 2222222334456788888888877763211 34567888889999999988754
Q ss_pred eee--cCCCccEEEEECCC---CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 362 KVY--GGKNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 362 ~~~--~~~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+. .+..|.++|+.++. .+..++...+++ +||.+.|+ +.+++|+++ ..+++++++++++|++++
T Consensus 366 ~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 436 (439)
T 2oat_A 366 DVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPT------HGDIIRFAPPLVIKEDELRESIEIINKTI 436 (439)
T ss_dssp TTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHH-TTEECCBS------SSSEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHH-CCeEEecC------CCCEEEEECccCCCHHHHHHHHHHHHHHH
Confidence 321 12367889999874 245677777765 59999874 257899975 569999999999999876
No 147
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=4e-29 Score=244.41 Aligned_cols=339 Identities=11% Similarity=0.079 Sum_probs=213.0
Q ss_pred cCCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..+|+..+.. .+. .++.+.+++.+++.+. ....| +.....+|++.+++++ + ++++|++++|+
T Consensus 51 d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~sG 120 (434)
T 3l44_A 51 DVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENG----VLYGT-PTALEVKFAKMLKEAM----P-ALDKVRFVNSG 120 (434)
T ss_dssp ETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHC----SCCSS-CCHHHHHHHHHHHHHC----T-TCSEEEEESSH
T ss_pred ECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC----cCCCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCch
Confidence 445678999987753 333 5899999999998752 12234 4556677777777775 4 67899999999
Q ss_pred HHHHHH-HHHhc--CCCCEEEEeCCCChhhhhhHHHhCCcccccc---ccccc-----ceEEEeecCccCCcccCCCCC-
Q 045431 136 KCDISR-LQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQK---DAEKY-----GKIEYMRCTAENGFFPDLSTV- 203 (433)
Q Consensus 136 ~~al~~-l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~- 203 (433)
++++.+ +..+. .++++|++.+|+|+++.......+..++... ....+ ..+..++.++...+...+...
T Consensus 121 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 200 (434)
T 3l44_A 121 TEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWG 200 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCC
Confidence 999997 44443 3779999999999887654443332211000 00000 123333332110110001111
Q ss_pred CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 204 ARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 204 ~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
++++ +++++| +|++|.+. +.+++++|.++|++||+++|+||+|.+| ..+.......+...++ +.||||.++
T Consensus 201 ~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~- 273 (434)
T 3l44_A 201 HEVA-AILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPD----LTALGKVIG- 273 (434)
T ss_dssp GGEE-EEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCS----EEEEEGGGG-
T ss_pred CCEE-EEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCC----eeehhhhhc-
Confidence 2344 455566 55566555 8899999999999999999999999988 5443322222222223 458999998
Q ss_pred cccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
+|+|+||++++++++ +.+.. .....+.+.++++++++.++++.... ++..++++++.+.+.+.|++
T Consensus 274 ~G~~iG~~~~~~~i~--------~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 342 (434)
T 3l44_A 274 GGLPIGAYGGKKEIM--------EQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILE 342 (434)
T ss_dssp TTSSCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHH
T ss_pred CCcCeeeEEEcHHHH--------HhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHH
Confidence 999999999998875 22222 12334566789999988888763211 23344444555555555443
Q ss_pred ----cCCeeecCCCccEEEEECCCCC--------------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhH
Q 045431 359 ----LGFKVYGGKNAPYVWVQFPGRS--------------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGN 420 (433)
Q Consensus 359 ----~g~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~ 420 (433)
+++....+..|.++++.+.... ..++...+++ +||.+.|+. .+++|+++..++++
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~rl~~~~t~e~ 415 (434)
T 3l44_A 343 QAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSK------YEAWFLTTEHTKED 415 (434)
T ss_dssp HHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSST------TCCEECCTTCCHHH
T ss_pred HHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecC------CCcEEEecccCHHH
Confidence 4442222246778888774211 1345556555 599999864 25689988889999
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 416 i~~~l~~l~~~l 427 (434)
T 3l44_A 416 IEYTIEAVGRAF 427 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 148
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.96 E-value=4e-29 Score=244.00 Aligned_cols=338 Identities=8% Similarity=0.019 Sum_probs=211.9
Q ss_pred CCCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...|||..|. .++. .++.+.+++.+++.+... ....| +.....+|++.+++++ + .++|++++|++
T Consensus 62 ~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~sGs 132 (433)
T 1z7d_A 62 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI--CSRAF-FSVPLGICERYLTNLL----G--YDKVLMMNTGA 132 (433)
T ss_dssp TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EEHHHHHHHHHHHHHH----T--CSEEEEESSHH
T ss_pred CCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCC--ccCCc-CCHHHHHHHHHHHhhc----C--CCeEEEeCCHH
Confidence 4566789998764 3555 789999999999875321 11123 2233456666666664 4 57999999999
Q ss_pred HHHHH-HHHhc---------CCC-CEEEEeCCCChhhhhh-HHHhCCcccccccccccceEEEeecCccCCcccCCCCCC
Q 045431 137 CDISR-LQIVF---------GSN-VTMAVQDPSYPAYVDS-SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVA 204 (433)
Q Consensus 137 ~al~~-l~~l~---------~~g-d~Vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (433)
+++.+ +..+. .+| |+|++.+|+|++.... ....|.......++.....+..++.++.+.+...++ .+
T Consensus 133 eA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~-~~ 211 (433)
T 1z7d_A 133 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELK-DP 211 (433)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHT-ST
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhC-CC
Confidence 99987 43322 467 9999999999886543 333331100000111112345555432111111111 24
Q ss_pred CccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++|+ ++| +|+||.+ ++.+++++|.++|++||+++|+||+|.++...+....+......+| + .||||.++ +
T Consensus 212 ~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~d-i---~t~sK~l~-~ 285 (433)
T 1z7d_A 212 NVCAFI-VEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPD-V---ILLGKALS-G 285 (433)
T ss_dssp TEEEEE-ECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS-E---EEECGGGG-T
T ss_pred CEEEEE-EECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCC-E---EEECcccc-C
Confidence 566655 455 6778975 6888999999999999999999999987755543322222221223 2 28999998 8
Q ss_pred c-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--
Q 045431 283 G-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-- 359 (433)
Q Consensus 283 G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 359 (433)
| +|+||++++++++ +.+.......+.+.++++++++.++++.... ++..++++++++++.+.|+++
T Consensus 286 G~~~~G~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~ 354 (433)
T 1z7d_A 286 GHYPISAVLANDDIM--------LVIKPGEHGSTYGGNPLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKRELK 354 (433)
T ss_dssp TSSCCEEEEECHHHH--------TTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECHHHH--------hhhccccccccCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999998875 2222222334455788888888887763211 245667777888888887764
Q ss_pred CCe---eecCCCccEEEEECCCC--ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 360 GFK---VYGGKNAPYVWVQFPGR--SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 360 g~~---~~~~~~g~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
++. ... ..|.++|+.++.. +..++...+++ +||.+.|+ +.+++|+++ ..+++++++++++|++++
T Consensus 355 ~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 426 (433)
T 1z7d_A 355 DSKIVRDVR-GKGLLCAIEFKNELVNVLDICLKLKE-NGLITRDV------HDKTIRLTPPLCITKEQLDECTEIIVKTV 426 (433)
T ss_dssp TCTTEEEEE-EETTEEEEEECTTTCCHHHHHHHHHH-TTEECCEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEE-eeeeEEEEEEccChhHHHHHHHHHHH-CCeEEecC------CCCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 432 222 3678899998743 45667777765 59999885 257899975 569999999999998875
No 149
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.96 E-value=3.3e-28 Score=239.44 Aligned_cols=324 Identities=12% Similarity=0.097 Sum_probs=214.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
..+||..+....+.++.+.+++.. ....|.+..+..+||+++++++ +. +++++|+|+++++.+ +
T Consensus 43 ~ylD~~~~~~~~~~~~~~~~a~~~---------~~~~y~~~~~~~~l~~~la~~~----~~--~~~~~~~~gt~a~~~al 107 (456)
T 2ez2_A 43 IYIDLLTDSGTNAMSDKQWAGMMM---------GDEAYAGSENFYHLERTVQELF----GF--KHIVPTHQGRGAENLLS 107 (456)
T ss_dssp CSEECSCSSSCCCCCHHHHHHHTT---------CCCCSSSCHHHHHHHHHHHHHH----CC--SEEEEESSHHHHHHHHH
T ss_pred ceeeeccccCCccCCHHHHHHhhc---------chhhcccChhHHHHHHHHHHHh----CC--CcEEEeCCcHHHHHHHH
Confidence 356776655444556666665541 1235777788999999999998 43 489999999999987 6
Q ss_pred HHhcCCCCEEEEeCCCC-hhhhhhHHHhCCcccccccccccceEEEeecCcc----C----CcccCCCC-----CC----
Q 045431 143 QIVFGSNVTMAVQDPSY-PAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAE----N----GFFPDLST-----VA---- 204 (433)
Q Consensus 143 ~~l~~~gd~Vl~~~p~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~-----~~---- 204 (433)
..++++|| +++.|+| +.+...+...| .+++.++.+.+ . ++..+++. .+
T Consensus 108 ~~l~~~gd--i~~~~~~~~~~~~~~~~~G------------~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~ 173 (456)
T 2ez2_A 108 QLAIKPGQ--YVAGNMYFTTTRYHQEKNG------------AVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAE 173 (456)
T ss_dssp HHHCCTTC--EEEESSCCHHHHHHHHHTT------------CEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG
T ss_pred HHhCCCCC--EeccccccchhHHHHHHcC------------CEEEEecccccccccccccccCCCCHHHHHHHHHhcccc
Confidence 77789999 7889999 77788888888 46777776532 1 12223221 12
Q ss_pred CccEEEEcCCCC-ccccCCCHHHHHHHHHHHHHcCCEEEEeccccc----------cccCCCCC-ccc-ccCCCCcceEE
Q 045431 205 RTDIIFFCSPNN-PTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL----------YISDDNPR-SIF-EIPGAKEVAIE 271 (433)
Q Consensus 205 ~~~~i~l~~p~n-PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~----------~~~~~~~~-~~~-~~~~~~~~vi~ 271 (433)
.+++|++++|+| |||.+++.+++++|+++|++||++||+||+|+. +.+.+.+. ++. .+....| +++
T Consensus 174 ~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d-~~~ 252 (456)
T 2ez2_A 174 NIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD-GCT 252 (456)
T ss_dssp GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS-EEE
T ss_pred ceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCC-EEE
Confidence 248888899998 999999999999999999999999999999985 33443221 110 1111233 454
Q ss_pred Eecccccccccccceeeeec-cccccccCCcchhHHHHHHHhhc-----cCCCcHHHHHH-HHHhcCcCChhHHHHHHHH
Q 045431 272 TSSFSKYAGFTGVRLGWTVI-PKELLFSDGFPVAKDFNRIVCTC-----FNGASNISQAG-GLACLSPEGFKAVHEVIGF 344 (433)
Q Consensus 272 i~S~sK~~~~~G~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~ 344 (433)
+ |++|..+ +| +.||+++ +++++ +.+....... ..+.+.....+ +...++... +...++
T Consensus 253 ~-S~kk~~~-~~-~gG~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~----~~~~~~ 317 (456)
T 2ez2_A 253 M-SGKKDCL-VN-IGGFLCMNDDEMF--------SSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ----YEYIEH 317 (456)
T ss_dssp E-ETTTTTC-CS-SCEEEEESCHHHH--------HHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC----HHHHHH
T ss_pred E-eCcccCC-CC-ceeEEEECCHHHH--------HHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH----HHHHHH
Confidence 4 7889875 67 7899998 45553 4444333211 11223222222 333332111 234445
Q ss_pred HHHHHHHHHHHHhhcCCeeecCCCccEEEEEC----CCCChHHH-----HHHHHHcCCeEecC-CCCCC----------C
Q 045431 345 YKENTDIIVETFNSLGFKVYGGKNAPYVWVQF----PGRSSWDV-----FSEILEKTHVVTTP-GSGFG----------P 404 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~----~~~~~~~~-----~~~l~~~~gi~v~~-g~~f~----------~ 404 (433)
.+++.+.+.+.|++.|+.+..|.+++++|+.+ ++.+..++ ...+++++||.+.+ |..|. .
T Consensus 318 ~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~ 397 (456)
T 2ez2_A 318 RVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHR 397 (456)
T ss_dssp HHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCC
T ss_pred HHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCcccccccc
Confidence 55666778888887788877777899999987 33334444 55554667998765 44331 1
Q ss_pred CCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 405 GGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 ~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
.+.+++||++. .+++++++++++|++++
T Consensus 398 ~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l 428 (456)
T 2ez2_A 398 PKLETVRLTIPRRVYTYAHMDVVADGIIKLY 428 (456)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 12478999975 68999999999998875
No 150
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.96 E-value=2.6e-29 Score=247.88 Aligned_cols=341 Identities=12% Similarity=0.065 Sum_probs=217.4
Q ss_pred CceEEecCCCCCCCChHHHHHHHHHHHhhcccCC---CCCCCCC-CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHH
Q 045431 63 AEVISLGIGDTTEPIPEVITSALAKRSYALSTQE---GYSGYGA-EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCD 138 (433)
Q Consensus 63 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~Y~~-~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~a 138 (433)
++.|.|+.+... +.|+.+.+++.+.+..+.... ....|.+ ..-..++++.+++++ ++++++|++|+|++++
T Consensus 66 ~~~iyld~~~~g-~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~t~g~t~a 140 (465)
T 3e9k_A 66 ENAIYFLGNSLG-LQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV----GANEKEIALMNALTVN 140 (465)
T ss_dssp CBCEECBTTTSC-CEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH----TCCGGGEEECSCHHHH
T ss_pred CCeEEecCCccC-CChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHc----CCCcCCEEEECCHHHH
Confidence 467888877654 445556555555554332101 1111211 123456778888776 8889999999999999
Q ss_pred HHH-HHHhcCCCCE---EEEeCCCChhhhh----hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC-----CC
Q 045431 139 ISR-LQIVFGSNVT---MAVQDPSYPAYVD----SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST-----VA 204 (433)
Q Consensus 139 l~~-l~~l~~~gd~---Vl~~~p~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~ 204 (433)
+++ +.+++++|+. |++++|+|++... .++..|..... ..+...+.+.+..++.+ +++ .+
T Consensus 141 l~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~-------~~v~~~~~~~~~~~d~~~l~~~i~~~~~ 213 (465)
T 3e9k_A 141 LHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE-------SMRMIKPREGEETLRIEDILEVIEKEGD 213 (465)
T ss_dssp HHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH-------HEEEECCCTTCSSCCHHHHHHHHHHHGG
T ss_pred HHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCccee-------eeEEEecCCCCCccCHHHHHHHHHhcCC
Confidence 997 5777766654 9999999998554 44445632110 01233344332221111 221 15
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~ 284 (433)
++++|++++||||||.+++ +++|.++|++||+++|+|++|+.... +..+... +..++++|++|+++.+..
T Consensus 214 ~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~---~~~~~~~----~~D~~~~s~~K~l~~gp~ 283 (465)
T 3e9k_A 214 SIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNV---ELYLHDW----GVDFACWCSYKYLNAGAG 283 (465)
T ss_dssp GEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCCEEEECSSSTTCCCTT
T ss_pred CeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCc---CCchhhc----CCCEEEECcccccccCCC
Confidence 7899999999999999998 78888999999999999999984211 2333332 234889999999932333
Q ss_pred ceeeeeccccccccCCcchhH-----HHHHHH------------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045431 285 RLGWTVIPKELLFSDGFPVAK-----DFNRIV------------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKE 347 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~~~~~-----~~~~~~------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 347 (433)
++|+++++++++....+.... ....+. ......++.+...++.++++......++++++++++
T Consensus 284 ~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~ 363 (465)
T 3e9k_A 284 GIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVL 363 (465)
T ss_dssp CCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 689999988875321111000 000000 000113444545444444442111236889999999
Q ss_pred HHHHHHHHHhh-----------cCCeeecCC----CccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE
Q 045431 348 NTDIIVETFNS-----------LGFKVYGGK----NAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV 412 (433)
Q Consensus 348 ~~~~l~~~l~~-----------~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi 412 (433)
+++++.+.|++ .|+.+..|. .|.++|+.++ ....++...|.+ +||.+.. ..++++|+
T Consensus 364 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~-~Gi~v~~------~~~~~iRi 435 (465)
T 3e9k_A 364 LTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-VPNKDVFQELEK-RGVVCDK------RNPNGIRV 435 (465)
T ss_dssp HHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHT-TTEECEE------ETTTEEEE
T ss_pred HHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec-CCHHHHHHHHHH-CCEEEec------CCCCEEEE
Confidence 99999999987 578887664 3778888887 344566667655 4999863 23579999
Q ss_pred ee---ccChhHHHHHHHHHHHhhC
Q 045431 413 SA---FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 413 ~~---~~~~~~l~~~l~~l~~~l~ 433 (433)
++ +++.++++++++.|+++++
T Consensus 436 s~~~~~~t~edi~~~~~~l~~~l~ 459 (465)
T 3e9k_A 436 APVPLYNSFHDVYKFTNLLTSILD 459 (465)
T ss_dssp BCCTTTCCHHHHHHHHHHHHHHHT
T ss_pred eCcccCCCHHHHHHHHHHHHHHHH
Confidence 85 4589999999999998864
No 151
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.96 E-value=5.8e-29 Score=237.11 Aligned_cols=322 Identities=13% Similarity=0.117 Sum_probs=208.7
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC---CCC----CHHHHHHHHHHHhccCCCC-CCcEEEcCCh-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA---EQG----EKPLRAAIASTFYKDLGIE-EGDIFVSDGA- 135 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~---~~g----~~~lr~~la~~l~~~~~~~-~~~i~~~~G~- 135 (433)
+++++.|.+ ++|+.+.+++.+.+....+ .+...|+. ..+ ..++++.+++++ +++ +++|++|+|+
T Consensus 4 ~~~~~~g~~--~~p~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~~v~~~~g~g 76 (360)
T 1w23_A 4 VFNFNAGPS--ALPKPALERAQKELLNFND-TQMSVMELSHRSQSYEEVHEQAQNLLRELL----QIPNDYQILFLQGGA 76 (360)
T ss_dssp CEECCSSSC--CCCHHHHHHHHHTSSSSTT-SSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHH
T ss_pred eEeecCCCc--CCCHHHHHHHHHHhhhhcc-ccccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEECCcc
Confidence 577777754 7889999999998754211 11112211 223 345555555555 664 5799999999
Q ss_pred HHHHHH-HHHhcCC---CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCC-cc-cCCCC---CCCc
Q 045431 136 KCDISR-LQIVFGS---NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENG-FF-PDLST---VART 206 (433)
Q Consensus 136 ~~al~~-l~~l~~~---gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~---~~~~ 206 (433)
++++.+ +..++.+ ||.|+++.++|... ..++..| +++.++.+++++ .+ .++++ .+++
T Consensus 77 t~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-------------~~~~v~~~~~~~~~d~~~l~~~~i~~~~ 142 (360)
T 1w23_A 77 SLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-------------ETHIAASTKANSYQSIPDFSEFQLNEND 142 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-------------EEEEEEECGGGTSCSCCCGGGCCCCTTE
T ss_pred hHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHhC-------------CeEEeecccccCcCCccchHhhccCCCC
Confidence 999997 5777755 56777777666543 2334445 345566553222 11 22322 3578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 207 DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 207 ~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
++|++++|+||||.+++ ++. ++||++||+|++|+.+.. +.++..+ + ++++|+||++|++| +
T Consensus 143 k~v~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~~---~~~~~~~----d--i~~~s~sK~~~~~G--~ 203 (360)
T 1w23_A 143 AYLHITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDILSR---PLKVNQF----G--MIYAGAQKNLGPSG--V 203 (360)
T ss_dssp EEEEEESEETTTTEECS--SCC------CCCSSCEEEECTTTTTSS---CCCGGGC----S--EEEEETTTTTSCTT--C
T ss_pred CEEEEeCCCCCcceecc--ccc------ccCCceEEEechhhcCCC---CcCcccC----C--EEEEEcccccCCCC--c
Confidence 99999999999999987 222 279999999999986432 2233222 2 78999999998666 8
Q ss_pred eeeeccccccccCCcchhH---HHHHH--HhhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 287 GWTVIPKELLFSDGFPVAK---DFNRI--VCTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
||++++++++.+ ...... .+... ......+++...+.++.++++..... ++++++++++++++++.+.|++++
T Consensus 204 G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 282 (360)
T 1w23_A 204 TVVIVKKDLLNT-KVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN 282 (360)
T ss_dssp EEEEEEHHHHCS-CCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEcHHHHhh-cccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999887532 111100 00000 11222345566666555555421112 568889999999999999999875
Q ss_pred -C-eee-cC--CCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 361 -F-KVY-GG--KNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 361 -~-~~~-~~--~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
+ ... .+ .+++++|+.+++. +..++...+ .++||.+.||..+ ++++||++. .+++++++++++|++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 283 GFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKA-KEQGFVGLNGHRS----VGGCRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp TSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcccccCCchhccCcEEEEEcCCCccHHHHHHHH-HHCCeeeecCCCC----CCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 5 543 12 2456999999742 234555554 4569999998753 478999975 58999999999999875
No 152
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.96 E-value=4.1e-28 Score=237.12 Aligned_cols=334 Identities=13% Similarity=0.094 Sum_probs=208.5
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC----CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE----QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDI 139 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~----~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al 139 (433)
+.+.|+.+.+. ++|+.+.+++.+.+..... .....|... ....++|+++++++ ++++++|++|+|+++++
T Consensus 18 ~~~~Ld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~ 91 (432)
T 3a9z_A 18 RKVYMDYNATT-PLEPEVIQAVTEAMKEAWG-NPSSSYVAGRKAKDIINTARASLAKMI----GGKPQDIIFTSGGTESN 91 (432)
T ss_dssp CCEECBTTTCC-CCCHHHHHHHHHHHHHCCS-CTTCSSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEESCHHHHH
T ss_pred CcEEeeCCccC-CCCHHHHHHHHHHHHHhcC-CCccCcHHHHHHHHHHHHHHHHHHHHc----CCCcCeEEEeCChHHHH
Confidence 57889888876 7789999999998864210 011122110 12368999999987 78888999999999999
Q ss_pred HH-HHHhc--------CCCCEEEEeCCCChhhh-----------------hhHHHhCCcccccccccccceEEEeecCc-
Q 045431 140 SR-LQIVF--------GSNVTMAVQDPSYPAYV-----------------DSSVIMGQTGEFQKDAEKYGKIEYMRCTA- 192 (433)
Q Consensus 140 ~~-l~~l~--------~~gd~Vl~~~p~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 192 (433)
.+ +..++ ++||+|++++|+|+.+. ...+..| .+++.++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g------------~~v~~v~~~~~ 159 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQV------------AEVTFVPVSKV 159 (432)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTS------------CEEEEECCCTT
T ss_pred HHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcC------------cEEEEEecCcc
Confidence 97 45554 58999999999998752 1122234 4788888764
Q ss_pred cCCcccC-CCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC----------CEEEEeccccccccCCCCCcc
Q 045431 193 ENGFFPD-LST--VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNG----------SIIVYDSAYALYISDDNPRSI 259 (433)
Q Consensus 193 ~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~----------~~li~De~~~~~~~~~~~~~~ 259 (433)
++.++.+ +++ .+++++|++++|+||||.+++ +++|.++|++++ ++||+|++|+... .+.++
T Consensus 160 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~---~~~~~ 233 (432)
T 3a9z_A 160 NGQVEVEDILAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK---RRVDV 233 (432)
T ss_dssp TSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT---SCCCH
T ss_pred cCCcCHHHHHHhccCCceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC---cccCh
Confidence 2212211 221 257899999999999999999 567888899999 9999999997532 13333
Q ss_pred cccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 260 FEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 260 ~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
.... .+ +++.|+||++| +|+||++++++......................+.+.+.+.++.++++.. .++++
T Consensus 234 ~~~~--~d--~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~~~ 305 (432)
T 3a9z_A 234 EDLG--VD--FLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV-SENCE 305 (432)
T ss_dssp HHHC--CS--EEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-HHHHH
T ss_pred hhcC--CC--EEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH-HhhHH
Confidence 3332 22 66899999874 46999999987621111100000000011122345677776666666521 23578
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCeee--cC-----CCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCCCC----
Q 045431 340 EVIGFYKENTDIIVETFNSL-GFKVY--GG-----KNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFGPG---- 405 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~-g~~~~--~~-----~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~---- 405 (433)
+++++++++++++.+.|+++ |+.+. .+ ..+..+++.+++ .+..++...+ .++.+.+|..|.+.
T Consensus 306 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~G~~~~~~~~~~ 382 (432)
T 3a9z_A 306 TYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC---QTLLASVGASCHSDHEDR 382 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC---SSEECBSSCGGGGGGTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh---cCeEEeccccccCCCCCC
Confidence 88999999999999999885 65442 32 123456666663 2344444432 37888777655321
Q ss_pred --------------CCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 406 --------------GEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 406 --------------~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
..+++||++.. +++++++++++|++++
T Consensus 383 ~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~ 425 (432)
T 3a9z_A 383 PSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAV 425 (432)
T ss_dssp CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 13789999754 8999999999998875
No 153
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.96 E-value=1.1e-26 Score=226.36 Aligned_cols=311 Identities=16% Similarity=0.155 Sum_probs=218.2
Q ss_pred EecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC-CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHh
Q 045431 67 SLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA-EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIV 145 (433)
Q Consensus 67 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l 145 (433)
+|+.++|+++.|+.+.+++.+.+.. . .|++ ..+..+||+++++++ +. ++|++|+|+++++.++...
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~----~---~y~~~~~~~~~l~~~la~~~----~~--~~v~~~~ggt~al~~~l~~ 86 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDS----Q---WLSNGGPLVREFEERVAGLA----GV--RHAVATCNATAGLQLLAHA 86 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHH----T---CCSSSCHHHHHHHHHHHHHH----TS--SEEEEESCHHHHHHHHHHH
T ss_pred cccccCCCCCChHHHHHHHHHHHhc----C---CcccCCHHHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHH
Confidence 6899999999999999999888863 1 3665 678999999999998 43 5899999999999985444
Q ss_pred cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEEEEcCCCCcccc
Q 045431 146 FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 146 ~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~l~~p~nPtG~ 220 (433)
+.+||+|++++|+|+++...+...| .+++.++.+++ ++..+ +++ .+++++|+++ ||||.
T Consensus 87 l~~gd~Vlv~~~~~~~~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~~~---~~tG~ 150 (424)
T 2po3_A 87 AGLTGEVIMPSMTFAATPHALRWIG------------LTPVFADIDPD-TGNLDPDQVAAAVTPRTSAVVGV---HLWGR 150 (424)
T ss_dssp HTCCSEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TSSBCHHHHGGGCCTTEEEEEEE---CGGGC
T ss_pred cCCCCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCC-cCCcCHHHHHHhhCcCCcEEEEE---CCCCC
Confidence 4589999999999999999888888 47888887652 22223 222 2478888875 48998
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecc-cccccc
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP-KELLFS 298 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~-~~~~~~ 298 (433)
..+ +++|.++|++||++||+|++|+ ++.+++. ++..+ .+ +++.||||..+++|+|+||++++ ++++
T Consensus 151 ~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~~--~~~~~---~d--i~~~S~sk~K~l~~~~~G~~v~~~~~l~-- 218 (424)
T 2po3_A 151 PCA---ADQLRKVADEHGLRLYFDAAHALGCAVDGR--PAGSL---GD--AEVFSFHATKAVNAFEGGAVVTDDADLA-- 218 (424)
T ss_dssp CCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHHH--
T ss_pred cCC---HHHHHHHHHHcCCEEEEECccccCCeECCe--ecccc---cC--EEEEeCCCCCCccCCCCeEEEeCCHHHH--
Confidence 755 8899999999999999999999 4555432 22222 23 88999995555667899999998 5653
Q ss_pred CCcchhHHHHHHHhhccC------------CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec
Q 045431 299 DGFPVAKDFNRIVCTCFN------------GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG 365 (433)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 365 (433)
+.+......... ..+.+...++... .+++++..++.+++++++.+.|+++ |+.+..
T Consensus 219 ------~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 287 (424)
T 2po3_A 219 ------ARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS-----LDAFPEVIDRNRRNHAAYREHLADLPGVLVAD 287 (424)
T ss_dssp ------HHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECC
T ss_pred ------HHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence 445443322110 1122222222211 2345677777888888888999887 787765
Q ss_pred -CCCc----cEEEEECC----CCChHHHHHHHHHcCCeEecCCCCCCCC--------------C-------CCeEEEe--
Q 045431 366 -GKNA----PYVWVQFP----GRSSWDVFSEILEKTHVVTTPGSGFGPG--------------G-------EGFIRVS-- 413 (433)
Q Consensus 366 -~~~g----~~~~~~~~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~--------------~-------~~~iRi~-- 413 (433)
+.++ .++++.++ +.+..++...+ .++||.+.+. |.+. . ...+|++
T Consensus 288 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L-~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~ 364 (424)
T 2po3_A 288 HDRHGLNNHQYVIVEIDEATTGIHRDLVMEVL-KAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTG 364 (424)
T ss_dssp GGGGSCCCCCCEEEEECHHHHSSCHHHHHHHH-HHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCS
T ss_pred CCCCCccccEEEEEEECCccchhhHHHHHHHH-HHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEEeeCC
Confidence 3332 23447776 34556666655 5569999872 2210 0 1127787
Q ss_pred eccChhHHHHHHHHHHHhh
Q 045431 414 AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 414 ~~~~~~~l~~~l~~l~~~l 432 (433)
...+++++++++++|++++
T Consensus 365 ~~~t~e~i~~~~~~L~~~~ 383 (424)
T 2po3_A 365 TAIGDDDIRRVADLLRLCA 383 (424)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3558999999999998865
No 154
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.96 E-value=1.7e-28 Score=240.79 Aligned_cols=344 Identities=11% Similarity=0.012 Sum_probs=206.3
Q ss_pred CCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.+++..||+..+.. .+ ..++.+.+++.+++.+. ..|....+..+.+.++++++.+..+.+.++|++|+|++
T Consensus 41 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~------~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs 114 (448)
T 3dod_A 41 INGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI------AHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGA 114 (448)
T ss_dssp TTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTC------SCCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHH
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc------cCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchH
Confidence 45677899987632 22 35899999999998642 12223445567778888887765566678999999999
Q ss_pred HHHHH-HHHhcC----CC----CEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCccCCc----------
Q 045431 137 CDISR-LQIVFG----SN----VTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTAENGF---------- 196 (433)
Q Consensus 137 ~al~~-l~~l~~----~g----d~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~---------- 196 (433)
+++.+ +..+.. +| |+|++.+|+|+++......++....+. .+.........++....-..
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRD 194 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhH
Confidence 99997 444443 44 999999999988765544443221110 01111112333433211000
Q ss_pred --ccCCCC-----CCCccEEEEcCCC-Cccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCc
Q 045431 197 --FPDLST-----VARTDIIFFCSPN-NPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKE 267 (433)
Q Consensus 197 --~~~~~~-----~~~~~~i~l~~p~-nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 267 (433)
..++++ ..++++|++..++ |++| .+++.+++++|.++|++||++||+||+|.++...+...........++
T Consensus 195 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~d 274 (448)
T 3dod_A 195 QCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPD 274 (448)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCC
Confidence 111221 1244554444445 7887 556888899999999999999999999998766554332222222222
Q ss_pred ceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHH-------HHhhccCCCcHHHHHHHHHhcCcCCh-hHH
Q 045431 268 VAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-------IVCTCFNGASNISQAGGLACLSPEGF-KAV 338 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~ 338 (433)
+.||||.++ +| +|+||++++++++ +.+.. .....+.+.++++++++.++|+.... ..+
T Consensus 275 ----i~t~sK~l~-~G~~~ig~v~~~~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 341 (448)
T 3dod_A 275 ----LMAAGKGIT-GGYLPIAVTFATEDIY--------KAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIV 341 (448)
T ss_dssp ----EEEECGGGG-TTSSCCEEEEEEHHHH--------HTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred ----EEEeccccc-CCcCceEEEEECHHHH--------HHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHH
Confidence 347899997 79 5999999998875 33332 23344566789999999988863211 223
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-CeeecCCCccEEEEECCCCC------------hHHHHHHHHHcCCeEecCCCCCCCC
Q 045431 339 HEVIGFYKENTDIIVETFNSLG-FKVYGGKNAPYVWVQFPGRS------------SWDVFSEILEKTHVVTTPGSGFGPG 405 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~g~~~~~~~~~~~------------~~~~~~~l~~~~gi~v~~g~~f~~~ 405 (433)
++.++..+..++.+.+ +.+++ +.... ..|.++|+.++... ..++...++++ ||.+.|+
T Consensus 342 ~~~~~~~~~~~~~l~~-l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------ 412 (448)
T 3dod_A 342 EQVAEKSKKLHFLLQD-LHALPHVGDIR-QLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL------ 412 (448)
T ss_dssp HHHHHHHHHHHHHHHH-HTTSTTEEEEE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE------
T ss_pred HHHHHHHHHHHHHHHH-HhcCCCeEEEE-eeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc------
Confidence 3333333333444444 44443 22232 35778899886321 25666676655 9999886
Q ss_pred CCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 406 GEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 406 ~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+++||+ +..+++++++++++|++++
T Consensus 413 -~~~iRi~~~~~~t~e~i~~~l~~l~~~l 440 (448)
T 3dod_A 413 -GDVIAFLPPLASTAEELSEMVAIMKQAI 440 (448)
T ss_dssp -TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2689996 5679999999999999875
No 155
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.96 E-value=2.8e-28 Score=238.04 Aligned_cols=337 Identities=11% Similarity=0.083 Sum_probs=218.6
Q ss_pred cCCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..+|++.+.. .+. .++.+.+++.+++.+.. ...| +.....+|++.+++++ + .+++|++++|+
T Consensus 49 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~----~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~~G 118 (429)
T 3k28_A 49 DIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGT----SFGA-PTEIENKLAKLVIERV----P-SIEIVRMVNSG 118 (429)
T ss_dssp ETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCS----CCSS-CCHHHHHHHHHHHHHS----T-TCSEEEEESSH
T ss_pred ECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCc----CcCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCCh
Confidence 345678999988763 333 58999999999987532 1233 5567778888888875 4 67899999999
Q ss_pred HHHHHH-HHHhc--CCCCEEEEeCCCChhhhhhHHHhCCccccc---cccccc-----ceEEEeecCccCCcccCCCCC-
Q 045431 136 KCDISR-LQIVF--GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ---KDAEKY-----GKIEYMRCTAENGFFPDLSTV- 203 (433)
Q Consensus 136 ~~al~~-l~~l~--~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~- 203 (433)
++++.. +..+. .+++.|++.+|+|+++.......+..++.. +....+ ..+..++.++...+...+...
T Consensus 119 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 198 (429)
T 3k28_A 119 TEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFG 198 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCC
Confidence 999997 44333 367899999999987654433222211100 000000 123333332111110001111
Q ss_pred CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 204 ARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 204 ~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
+++++ ++++| +|++|.+. +.+++++|.++|++||+++|+||+|.++ ..+.......+...++ +.||||.++
T Consensus 199 ~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~- 271 (429)
T 3k28_A 199 DDIAC-VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPD----LTCLGKVIG- 271 (429)
T ss_dssp GGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCS----EEEECGGGG-
T ss_pred CCEEE-EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCc----eehhhhhhc-
Confidence 23444 55566 45556554 6888999999999999999999999988 5543222222222222 347999998
Q ss_pred cccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
+|+|+||++++++++ +.+.. .....+.+.++++++++.++++... +++.++++++++++.+.|++
T Consensus 272 ~G~~iG~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~ 339 (429)
T 3k28_A 272 GGLPVGAYGGKAEIM--------RQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRK 339 (429)
T ss_dssp TTSCCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcHHHH--------hhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 799999999998875 22221 1133455678999999999887543 56667777777777777765
Q ss_pred c----CC-eeecCCCccEEEEECCCCC--------------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChh
Q 045431 359 L----GF-KVYGGKNAPYVWVQFPGRS--------------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRG 419 (433)
Q Consensus 359 ~----g~-~~~~~~~g~~~~~~~~~~~--------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~ 419 (433)
. +. .... ..|.++++.+.... ..++...+++ +||.+.|+. .+++|+++..+++
T Consensus 340 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~r~~~~~t~e 411 (429)
T 3k28_A 340 AAEKHGIPHHIN-RAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPSQ------FEGLFLSTVHSDA 411 (429)
T ss_dssp HHHHTTCCCEEE-EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSST------TSCBCCCTTCCHH
T ss_pred HHhhCCCCEEEE-eeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecCC------CCCEEEECCCCHH
Confidence 3 32 2233 35778888774211 2455566655 599998863 3568999888999
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 412 ~i~~~l~~l~~~l 424 (429)
T 3k28_A 412 DIEATIAAAEIAM 424 (429)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 156
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.96 E-value=1.8e-28 Score=241.04 Aligned_cols=337 Identities=12% Similarity=0.077 Sum_probs=204.7
Q ss_pred CCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...|||+.+.+. + ..++.+.+++.+.+... . .| .+..++++++++++.+..+ ++++|++++|++
T Consensus 54 ~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~----~--~~---~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~ 123 (453)
T 2cy8_A 54 VDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG----V--QY---AASHPLEVRWAERIVAAFP-SIRKLRFTGSGT 123 (453)
T ss_dssp TTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT----C--SS---CSSCHHHHHHHHHHHHHCT-TCSEEEEESCHH
T ss_pred CCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC----C--CC---CCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHH
Confidence 345678999888532 2 36899999999988641 1 22 2457899999999987555 678999999999
Q ss_pred HHHHHH-HH--hcCCCCEEEEeCCCChhhhhhHHH-hCC-------cccccccccccceEEEeecCccCCcccCCCCC-C
Q 045431 137 CDISRL-QI--VFGSNVTMAVQDPSYPAYVDSSVI-MGQ-------TGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-A 204 (433)
Q Consensus 137 ~al~~l-~~--l~~~gd~Vl~~~p~~~~~~~~~~~-~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 204 (433)
+++.++ .. .+.+++.|++.+|+|+++...... .|. .++.... ...+..++.++...+...+... +
T Consensus 124 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~d~~~le~~l~~~~~ 200 (453)
T 2cy8_A 124 ETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPET---TANTLLIRPDDIEGMREVFANHGS 200 (453)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEECC----------------------------C---GGGEEEECTTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccc---cCceeecCCCCHHHHHHHHHhcCC
Confidence 999974 43 133456888888999876553322 111 0110000 0123334432110110001111 2
Q ss_pred CccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++ ++++| +||||.++ +.+++++|.++|++||++||+||+|+++ ..+.......+...+| +.||||+++ +
T Consensus 201 ~~~~-vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~-~ 273 (453)
T 2cy8_A 201 DIAA-FIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPD----LTCLAKASA-G 273 (453)
T ss_dssp GEEE-EEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCS----EEEEEGGGG-T
T ss_pred CEEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCc----EEEEChhhh-C
Confidence 4555 45666 57799765 7999999999999999999999999977 4443222212221223 338999998 6
Q ss_pred ccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc-CChhHHHHHHHHHHHHHHHHHHHHhhc--
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP-EGFKAVHEVIGFYKENTDIIVETFNSL-- 359 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 359 (433)
|+|+||++++++++..-... .........+.+.+++++.++.++++. . . +++.++++++++++.+.|+++
T Consensus 274 G~~~G~v~~~~~~~~~l~~~---~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~ 346 (453)
T 2cy8_A 274 GLPGGILGGREDVMGVLSRG---SDRKVLHQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFA 346 (453)
T ss_dssp TSSCEEEEECHHHHTTSSSC---C---------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEechHHHHHHhccc---cCCCceeCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998875211100 001112233455788999888887764 2 1 344566667777777766553
Q ss_pred --CCeeecCCCccEEEEECCC-----C------------C---hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccC
Q 045431 360 --GFKVYGGKNAPYVWVQFPG-----R------------S---SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGH 417 (433)
Q Consensus 360 --g~~~~~~~~g~~~~~~~~~-----~------------~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~ 417 (433)
++....+..|.++|+.++. . + ..++...+++ +||.+.|+ +.+|+++..+
T Consensus 347 ~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~--------~~~~l~~~~t 417 (453)
T 2cy8_A 347 RKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGR--------GSVFLSAQHE 417 (453)
T ss_dssp HTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTT--------TEEECCTTCC
T ss_pred hCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCC--------CCEEeeccCC
Confidence 4433223467899999874 1 1 3456666665 59999653 2478887789
Q ss_pred hhHHHHHHHHHHHhh
Q 045431 418 RGNVLEACKRFKHLY 432 (433)
Q Consensus 418 ~~~l~~~l~~l~~~l 432 (433)
++++++++++|++++
T Consensus 418 ~~~i~~~l~~l~~~l 432 (453)
T 2cy8_A 418 REHVEHLVTTFDRVL 432 (453)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 157
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.96 E-value=9.2e-27 Score=224.58 Aligned_cols=310 Identities=12% Similarity=0.089 Sum_probs=218.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++|+|+. |+ .|+.+.+++.+.+... .|.+..+..++++++++++ +. +++++++|+++++.+ +
T Consensus 9 ~~i~~~~--p~--~~~~~~~a~~~~~~~~-------~~~~~~~~~~l~~~la~~~----~~--~~~~~~~~gt~al~~~~ 71 (393)
T 1mdo_A 9 DFLPFSR--PA--MGAEELAAVKTVLDSG-------WITTGPKNQELEAAFCRLT----GN--QYAVAVSSATAGMHIAL 71 (393)
T ss_dssp CCBCSCC--CC--CCHHHHHHHHHHHHHT-------CCSSSHHHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHH
T ss_pred cccccCC--CC--CCHHHHHHHHHHHhcC-------CcCCChHHHHHHHHHHHHh----CC--CcEEEecChHHHHHHHH
Confidence 3677776 44 4567788888887642 1334568899999999998 54 489999999999997 5
Q ss_pred HHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCC
Q 045431 143 QIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNN 216 (433)
Q Consensus 143 ~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~n 216 (433)
..+ +++||+|++++|+|+++...++..| .+++.++.+++ ++..+++. .+++++|+++ |
T Consensus 72 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~---~ 135 (393)
T 1mdo_A 72 MALGIGEGDEVITPSMTWVSTLNMIVLLG------------ANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPV---H 135 (393)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCB---C
T ss_pred HHcCCCCCCEEEeCCCccHhHHHHHHHCC------------CEEEEEeccCC-cCCCCHHHHHHhcCCCceEEEEe---C
Confidence 677 7999999999999999999888888 47888887653 22233221 2468887765 4
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeecc-
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIP- 292 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~- 292 (433)
|||.+.+ +++|.++|+++|+++|+|++|+. ..+.+.+ +.. .++++.||| |.+ +|.|.||++++
T Consensus 136 ~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~---~d~~~~S~~k~K~l--~~~~~g~~~~~~ 202 (393)
T 1mdo_A 136 YAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGRH-----IGA---RGTAIFSFHAIKNI--TCAEGGIVVTDN 202 (393)
T ss_dssp GGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTEE-----TTS---SSEEEEECCTTSSS--CSSSCEEEEESC
T ss_pred CCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeECCee-----cCC---CCeEEEeCCCCCcc--ccccceEEEeCC
Confidence 8999876 88999999999999999999995 3333211 111 458899999 666 45589999987
Q ss_pred ccccccCCcchhHHHHHHHhhcc------------------------CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHH
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCF------------------------NGASNISQAGGLACLSPEGFKAVHEVIGFYKEN 348 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 348 (433)
++++ +.+........ ...+.+...++...++ .+++..++.+++
T Consensus 203 ~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-----~~~~~~~~~~~~ 269 (393)
T 1mdo_A 203 PQFA--------DKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ-----KLDALNARRAAI 269 (393)
T ss_dssp HHHH--------HHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHH
T ss_pred HHHH--------HHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 4553 44433221110 1124444443333332 245666667778
Q ss_pred HHHHHHHHhhcCCeeec-C-----CCccEEEEECC----CCChHHHHHHHHHcCCeEecCCCCCC--------------C
Q 045431 349 TDIIVETFNSLGFKVYG-G-----KNAPYVWVQFP----GRSSWDVFSEILEKTHVVTTPGSGFG--------------P 404 (433)
Q Consensus 349 ~~~l~~~l~~~g~~~~~-~-----~~g~~~~~~~~----~~~~~~~~~~l~~~~gi~v~~g~~f~--------------~ 404 (433)
++.+.+.|++.++.+.. + .+++++|+.++ +.+..++...+.+ +||.+.+|..+. .
T Consensus 270 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~ 348 (393)
T 1mdo_A 270 AAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPTLTL 348 (393)
T ss_dssp HHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTTCCC
T ss_pred HHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHh-CCCCcccccCccccChhhhccCCccCC
Confidence 88899999887766542 2 34568999997 4566677777665 599999987541 0
Q ss_pred C-----CCCeEEEeec--cChhHHHHHHHHHHHhhC
Q 045431 405 G-----GEGFIRVSAF--GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 405 ~-----~~~~iRi~~~--~~~~~l~~~l~~l~~~l~ 433 (433)
. ..+.+|+++. .+++++++++++|+++++
T Consensus 349 ~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 349 PDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp HHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 1347999975 589999999999998764
No 158
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.95 E-value=3.1e-28 Score=239.18 Aligned_cols=341 Identities=14% Similarity=0.116 Sum_probs=217.8
Q ss_pred CCCceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 61 PDAEVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 61 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
++...+|++.+. ..+. .++.+.+++.+++.+.. ...+ ..+..+++.++++.+.+.++.++++|++|+|+++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~----~~~~--~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggse 121 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD----YSPG--FQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSE 121 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS----CCCS--SSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC----Cccc--cccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHH
Confidence 455688987654 2332 37999999999886531 1111 0234456666666666555677899999999999
Q ss_pred HHHH-HHHhcC--------CCCEEEEeCCCChhhhh-hHHHhCCcccccccccccceEEEeecCc--cCC---cc-----
Q 045431 138 DISR-LQIVFG--------SNVTMAVQDPSYPAYVD-SSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENG---FF----- 197 (433)
Q Consensus 138 al~~-l~~l~~--------~gd~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~---~~----- 197 (433)
++.+ +..+.. +||+|++.+|+|+++.. .+...|.......++.....+..++.+. ... .+
T Consensus 122 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~ 201 (449)
T 3a8u_X 122 CALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGG 201 (449)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHH
Confidence 9987 444442 68999999999988654 4444442110000110011233333321 100 11
Q ss_pred ----cCCCC--C----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCC
Q 045431 198 ----PDLST--V----ARTDIIFFCSP-NNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGA 265 (433)
Q Consensus 198 ----~~~~~--~----~~~~~i~l~~p-~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 265 (433)
.++++ . ++++ +++++| +||||. ..+.+++++|.++|++||++||+||+|.++...+....+......
T Consensus 202 ~~~~~~le~~l~~~~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~ 280 (449)
T 3a8u_X 202 IALADELLKLIELHDASNIA-AVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVT 280 (449)
T ss_dssp HHHHHHHHHHHHHHCGGGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCEE-EEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCC
Confidence 11221 1 2444 455667 477997 557999999999999999999999999877554432222222212
Q ss_pred CcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHH---------HhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 266 KEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI---------VCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 266 ~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
+| ++ ||||.++ +| +|+||++++++++ +.+... ....+...+++++.++.++++....
T Consensus 281 ~d-i~---s~sK~l~-~G~~~~G~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~ 347 (449)
T 3a8u_X 281 PD-LM---CIAKQVT-NGAIPMGAVIASTEIY--------QTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK 347 (449)
T ss_dssp CS-EE---EECGGGG-TTSSCCEEEEEEHHHH--------HHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred CC-EE---EEccccc-CCCCceEEEEECHHHH--------HHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHh
Confidence 23 22 8999998 68 9999999988774 444432 1223445688888888887762211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcC-Ceee--cCCCccEEEEECCCCC------hHHHHHHHHHcCCeEecCCCCCCCCC
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSLG-FKVY--GGKNAPYVWVQFPGRS------SWDVFSEILEKTHVVTTPGSGFGPGG 406 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~--~~~~g~~~~~~~~~~~------~~~~~~~l~~~~gi~v~~g~~f~~~~ 406 (433)
+...++++++++.+.+.|++++ +... .+..|+++|++++... ..++...++++ ||.+.|+ +
T Consensus 348 ---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~------g 417 (449)
T 3a8u_X 348 ---ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG------G 417 (449)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE------T
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC------C
Confidence 2456777888888888887742 3221 1236789999997421 12566776655 9999986 2
Q ss_pred CCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 407 EGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 407 ~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+++||+ +..+++++++++++|++++
T Consensus 418 -~~iRis~~~~~t~~~i~~~l~~l~~~l 444 (449)
T 3a8u_X 418 -DTLQFGPTFNSKPQDLDRLFDAVGEVL 444 (449)
T ss_dssp -TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -CEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 689999 4679999999999999875
No 159
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.95 E-value=5.1e-28 Score=236.08 Aligned_cols=340 Identities=9% Similarity=0.013 Sum_probs=211.0
Q ss_pred cCCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..|||+.|.. .+. .++.+.+++.+++.+. ....| ..+++.++++++.+.++ ++++|++++|+
T Consensus 48 d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-----~~~~~~~la~~l~~~~~-~~~~v~~~~gg 117 (427)
T 3fq8_A 48 DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG----TSFGA-----PCALENVLAEMVNDAVP-SIEMVRFVNSG 117 (427)
T ss_dssp ETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC----SCCSS-----CCHHHHHHHHHHHHHST-TCSEEEEESSH
T ss_pred ECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhC----CCcCC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCCH
Confidence 345677999988863 232 5899999999988642 11122 34566666666665445 68899999999
Q ss_pred HHHHHHHH---HhcCCCCEEEEeCCCChhhhhhHHHhCCccccc---cccccc-----ceEEEeecCccCCcccCCCCC-
Q 045431 136 KCDISRLQ---IVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ---KDAEKY-----GKIEYMRCTAENGFFPDLSTV- 203 (433)
Q Consensus 136 ~~al~~l~---~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~- 203 (433)
++++.++. .....++.|++.+|+|+++.......+..++.. ...... ..+..++.++...+...+...
T Consensus 118 sea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 197 (427)
T 3fq8_A 118 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENP 197 (427)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCC
Confidence 99999743 222445889999999987654433332211100 000000 123344432111111111111
Q ss_pred CCccEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 204 ARTDIIFFCSPNNPTGAAAT-REQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~-~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
.++++|+++.++|++|.+.+ .+++++|.++|++||++||+||+|.++ ..+...........++ +.||||+++ +
T Consensus 198 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~-~ 271 (427)
T 3fq8_A 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPD----LTTLGKIIG-G 271 (427)
T ss_dssp TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCS----EEEECGGGG-T
T ss_pred CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCC----hhhhhhhhh-C
Confidence 25666665555677787665 666999999999999999999999987 5443222212221122 468999998 8
Q ss_pred ccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh-
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS- 358 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 358 (433)
|+|+||++++++++ +.+.. .....+.+.++++++++.++++.... +.+.++++++.+.+.+.|++
T Consensus 272 G~~~G~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~ 340 (427)
T 3fq8_A 272 GLPVGAYGGKREIM--------QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAI 340 (427)
T ss_dssp TSSCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEcHHHH--------HhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 22221 11233445688999988888752211 22344444555555554443
Q ss_pred ---cCCeeecCCCccEEEEECCCC--C------------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHH
Q 045431 359 ---LGFKVYGGKNAPYVWVQFPGR--S------------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNV 421 (433)
Q Consensus 359 ---~g~~~~~~~~g~~~~~~~~~~--~------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l 421 (433)
+++....+..|+++|+.++.. . ..++...+++ +||.+.|+.. ..+|+++..+++++
T Consensus 341 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~------~r~~~~~~~t~e~i 413 (427)
T 3fq8_A 341 AQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF------EAGFTSLAHTEEDI 413 (427)
T ss_dssp HHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTCCHHHH
T ss_pred HHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCC------CCEEeeCcCCHHHH
Confidence 344333334678899998632 1 2356666655 5999998652 35777777899999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 414 ~~~l~~l~~~l 424 (427)
T 3fq8_A 414 DATLAAARTVM 424 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 160
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.95 E-value=3.1e-27 Score=233.05 Aligned_cols=343 Identities=12% Similarity=0.057 Sum_probs=229.7
Q ss_pred cCCCCceEEecCC--CCCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIG--DTTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g--~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..|||..| ...+. .++.+.+++.+++.+.. ..+ ...+..+++.++++++.+..+.+.++|++++|+
T Consensus 50 d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~-----~~~-~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sG 123 (476)
T 3i5t_A 50 TEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP-----YAS-PWYMATSPAARLAEKIATLTPGDLNRIFFTTGG 123 (476)
T ss_dssp ETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC-----CCC-TTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSH
T ss_pred ECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc-----Ccc-cCccCCHHHHHHHHHHHhcCCCCcCEEEEeCch
Confidence 3456778999877 33333 68999999999987532 111 114667889999999987666677899999999
Q ss_pred HHHHHH-HHHhc--------CCCCEEEEeCCCChhhhhhHHHhCCccccc-ccccccceEEEeecCc--cC-Cc------
Q 045431 136 KCDISR-LQIVF--------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-KDAEKYGKIEYMRCTA--EN-GF------ 196 (433)
Q Consensus 136 ~~al~~-l~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~--~~-~~------ 196 (433)
++++.. +..+. ..++.|++.+|+|+++......++....+. .+......+..++... .. +.
T Consensus 124 seA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 203 (476)
T 3i5t_A 124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFL 203 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHH
Confidence 999987 44433 346799999999999876666555432211 1111112233333211 00 00
Q ss_pred ---ccCCCC-----C-CCccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc-ccCCC
Q 045431 197 ---FPDLST-----V-ARTDIIFFCSPNNPTGA-AATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF-EIPGA 265 (433)
Q Consensus 197 ---~~~~~~-----~-~~~~~i~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~ 265 (433)
..++++ . .++++|++..++|++|. +++.+++++|.++|++||+++|+||+|.+|...+...... .+...
T Consensus 204 ~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~ 283 (476)
T 3i5t_A 204 DDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVV 283 (476)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCC
Confidence 111221 1 34566665555788885 7899999999999999999999999999887666433333 22222
Q ss_pred CcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHH-------HhhccCCCcHHHHHHHHHhcCcCChhH
Q 045431 266 KEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI-------VCTCFNGASNISQAGGLACLSPEGFKA 337 (433)
Q Consensus 266 ~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~ 337 (433)
+| ++ +|||.++ .| +|+|+++++++++ +.+... ....+.+.++++++++.++|+....
T Consensus 284 pd-i~---t~sK~l~-~G~~plg~v~~~~~i~--------~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~-- 348 (476)
T 3i5t_A 284 PD-II---TFAKGVT-SGYVPLGGLAISEAVL--------ARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER-- 348 (476)
T ss_dssp CS-EE---EECGGGG-TTSSCCEEEEECHHHH--------HTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHH--
T ss_pred cc-hh---hhhhhhc-CCCcCeEEEEECHHHH--------HHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHh--
Confidence 33 33 6899998 78 9999999998875 333321 2334566889999999988863211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC----CeeecCCCccEEEEECCCCC------------hHHHHHHHHHcCCeEecCCCC
Q 045431 338 VHEVIGFYKENTDIIVETFNSLG----FKVYGGKNAPYVWVQFPGRS------------SWDVFSEILEKTHVVTTPGSG 401 (433)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~------------~~~~~~~l~~~~gi~v~~g~~ 401 (433)
+.+.++++++.+++.+.|++++ +.... ..|.++++.+.... ...+...+++ +||.+.|.
T Consensus 349 -~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~-~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-- 423 (476)
T 3i5t_A 349 -EGIVDQAREMADYFAAALASLRDLPGVAETR-SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFE-LGLIVRPL-- 423 (476)
T ss_dssp -TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEE-EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHH-TTEECEEE--
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecCceeEEEEecCccccccccchhHHHHHHHHHHHH-CCCEEEec--
Confidence 3456667777777777777542 33333 35677888876321 3455566655 49999873
Q ss_pred CCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 402 FGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 402 f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+ +++||+ +..+++++++++++|++++
T Consensus 424 ----g-~~iRi~p~l~~t~e~i~~~l~~l~~~l 451 (476)
T 3i5t_A 424 ----G-DLCVISPPLIISRAQIDEMVAIMRQAI 451 (476)
T ss_dssp ----T-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ----C-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2 789999 6779999999999999876
No 161
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.95 E-value=1.7e-27 Score=235.01 Aligned_cols=338 Identities=14% Similarity=0.113 Sum_probs=229.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC---CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA---EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
.++.|+ +... ...+.+.+++.+.+ ..++.|.+ ..|..++++++++++.+.++++. .+++++|+++++.
T Consensus 67 ~~~~lg-~~~~-~~~p~v~~~~~~~~------~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~ 137 (474)
T 1wyu_B 67 TFYPLG-SCTM-KYNPKLHEEAARLF------ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGEL 137 (474)
T ss_dssp SCCCBT-TTCC-CCCCHHHHHHHHTT------SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHH
T ss_pred Cccccc-cccc-cCCHHHHHHHHHHH------HhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHH
Confidence 467787 4433 33345555665542 22334443 56778899999998887556554 4678899999887
Q ss_pred H-HHHh----cCCCC-----EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCcc
Q 045431 141 R-LQIV----FGSNV-----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTD 207 (433)
Q Consensus 141 ~-l~~l----~~~gd-----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~ 207 (433)
+ +..+ .++|| +|++++|+|+.+...+...| .+++.++.+.++..+.+ +++ .++++
T Consensus 138 ~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G------------~~vv~v~~~~~~~~d~~~L~~~i~~~t~ 205 (474)
T 1wyu_B 138 TGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAG------------YQVREIPSGPEGEVDLEALKRELGPHVA 205 (474)
T ss_dssp HHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTT------------CEEEEECBCTTSSBCHHHHHHHCSTTEE
T ss_pred HHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCC------------CEEEEecCCCCCCcCHHHHHHhhCCCce
Confidence 5 3332 36887 99999999999999888888 47888888643322221 221 35789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc-c---
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT-G--- 283 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~-G--- 283 (433)
+|++++| ||||.+. +++++|.++|++||+++|+|++|+....+ ..+...+ +..+++.|+||+++.| |
T Consensus 206 ~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g--~~~~~~~----g~di~~~s~~K~~~~p~g~gG 276 (474)
T 1wyu_B 206 ALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDM----GFDVVHLNLHKTFTVPHGGGG 276 (474)
T ss_dssp EEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTT--TCCHHHH----TCSEEECCTTTTTCCCCTTSC
T ss_pred EEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhcc--CCCcccC----CCcEEEEeCccccccCCCCCC
Confidence 9999998 6899873 35899999999999999999999865432 1122222 2348889999999765 4
Q ss_pred cceeeeeccccccccCCcchhH----HH----HHH---HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHH
Q 045431 284 VRLGWTVIPKELLFSDGFPVAK----DF----NRI---VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDII 352 (433)
Q Consensus 284 ~r~G~l~~~~~~~~~~~~~~~~----~~----~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 352 (433)
+|+||++++++++..-..++.. .+ .+. ......+.+.+++.++..++...+.+++++..+++.++++++
T Consensus 277 ~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l 356 (474)
T 1wyu_B 277 PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYL 356 (474)
T ss_dssp CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999998875211100000 00 000 000112356778888888887544567788899999999999
Q ss_pred HHHHhhcCCeeecCCCccE-EEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeecc--ChhHHHHHHHHH
Q 045431 353 VETFNSLGFKVYGGKNAPY-VWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFG--HRGNVLEACKRF 428 (433)
Q Consensus 353 ~~~l~~~g~~~~~~~~g~~-~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~~~l~~~l~~l 428 (433)
.+.|++.|+++..+...+. +|+.++ +.+..++...|+++ ||.+ |+..|.....+++||++.. +.+++++++++|
T Consensus 357 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L 434 (474)
T 1wyu_B 357 KELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLEL-GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAM 434 (474)
T ss_dssp HHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHT-TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHH
T ss_pred HHHHhhcCcEecCCCCcceEEEEEcCCCCCHHHHHHHHHHC-Cccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHH
Confidence 9999988877643322221 677774 44667777777766 9985 6665643346789999754 899999999999
Q ss_pred HHhhC
Q 045431 429 KHLYK 433 (433)
Q Consensus 429 ~~~l~ 433 (433)
+++++
T Consensus 435 ~~~~~ 439 (474)
T 1wyu_B 435 GALLK 439 (474)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98763
No 162
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.95 E-value=7.1e-28 Score=236.38 Aligned_cols=341 Identities=8% Similarity=0.009 Sum_probs=221.6
Q ss_pred CCC--ceEEecCCC--CCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 61 PDA--EVISLGIGD--TTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 61 ~~~--~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
+++ ..|||..|. ..+. .++.+.+++.+++.+.. ....++.+.....+|++.+++++ +.+.++|++++|+
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~~~~L~e~la~~~----~~~~~~v~~~~sG 144 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN--HVMFGGLTHEPAARLAKLLVDIT----PAGLDTVFFSDSG 144 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS--CCCSSSEECHHHHHHHHHHHHHS----STTEEEEEEESSH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhC----CCCcCEEEEeCcH
Confidence 667 789998773 3333 68999999999987642 11112213334455555555554 6677899999999
Q ss_pred HHHHHH-HHHhcC-------CC-CEEEEeCCCChhhhhhHHHhCC-cccc-cccccccceEEEeecCccCC---cccCCC
Q 045431 136 KCDISR-LQIVFG-------SN-VTMAVQDPSYPAYVDSSVIMGQ-TGEF-QKDAEKYGKIEYMRCTAENG---FFPDLS 201 (433)
Q Consensus 136 ~~al~~-l~~l~~-------~g-d~Vl~~~p~~~~~~~~~~~~g~-~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~ 201 (433)
++++.+ +..+.. +| +.|++.+++|++.......++. ...+ ..+.........++...... ...+++
T Consensus 145 seA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le 224 (457)
T 3tfu_A 145 SVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFE 224 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHH
Confidence 999997 444433 55 5899999999887655554421 1110 00111111233333322110 011122
Q ss_pred C-----CCCccEEEEcC-CCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEec
Q 045431 202 T-----VARTDIIFFCS-PNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSS 274 (433)
Q Consensus 202 ~-----~~~~~~i~l~~-p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S 274 (433)
+ .+++++|++.. ++||+|.++ +.+.+++|.++|++||+++|+||+|.+|...+.......+...+| ++ |
T Consensus 225 ~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pd-ii---t 300 (457)
T 3tfu_A 225 AQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPD-IM---C 300 (457)
T ss_dssp HHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS-EE---E
T ss_pred HHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCce-EE---E
Confidence 1 14566666665 689999876 788899999999999999999999998866654433333322233 33 8
Q ss_pred ccccccccc-cceeeeeccccccccCCcchhHHHHH-----HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHH
Q 045431 275 FSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNR-----IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKEN 348 (433)
Q Consensus 275 ~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 348 (433)
|||.++ +| +|+||++++++++ +.+.. +....+.+.++++++++.+.|+.... +.+.++++++
T Consensus 301 ~sK~l~-gG~~~lG~v~~~~~i~--------~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~---~~~~~~~~~~ 368 (457)
T 3tfu_A 301 VGKALT-GGYLSLAATLCTADVA--------HTISAGAAGALMHGPTFMANPLACAVSVASVELLLG---QDWRTRITEL 368 (457)
T ss_dssp ECGGGG-TTSSCCEEEEEEHHHH--------HHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT---SCHHHHHHHH
T ss_pred EChhhh-CCCcceEEEEEcHHHH--------HHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh---hHHHHHHHHH
Confidence 999987 56 7999999998885 44431 12334566789999988888762111 2345566677
Q ss_pred HHHHHHHHhhc----CCeeecCCCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHH
Q 045431 349 TDIIVETFNSL----GFKVYGGKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNV 421 (433)
Q Consensus 349 ~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l 421 (433)
.+++.+.|+++ ++.... ..|+++++.++. .+..++...++++ ||.+.|. .+++||+ +..+++++
T Consensus 369 ~~~l~~~L~~l~~~~~v~~vr-~~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~-------~~~lRi~p~~~~t~eei 439 (457)
T 3tfu_A 369 AAGLTAGLDTARALPAVTDVR-VCGAIGVIECDRPVDLAVATPAALDR-GVWLRPF-------RNLVYAMPPYICTPAEI 439 (457)
T ss_dssp HHHHHHHHGGGGGSTTEEEEE-ECSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB-------TTEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHhcCCCeeeee-cCCeEEEEEECCcccHHHHHHHHHHC-CeEEEec-------CCEEEEECCCCCCHHHH
Confidence 77777777764 233333 357888888873 3456777777665 9999873 2689998 45699999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 440 ~~~l~~L~~~l 450 (457)
T 3tfu_A 440 TQITSAMVEVA 450 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 163
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=1.9e-27 Score=234.69 Aligned_cols=323 Identities=15% Similarity=0.129 Sum_probs=209.5
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQ 143 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~ 143 (433)
.+|+..+.+ . +.+.+++.+.+.. ....|++..+..+|++++++++ +. ++|++|+|+++++.+ +.
T Consensus 45 ylD~~~~~~---~-~~v~~a~~~~~~~-----~~~~y~~~~~~~~l~~~la~~~----~~--~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 45 YIDLLTDSG---T-NAMSDHQWAAMIT-----GDEAYAGSRNYYDLKDKAKELF----NY--DYIIPAHQGRGAENILFP 109 (467)
T ss_dssp SEECSCSSS---C-CCEEHHHHHHHHT-----CCCCSSSCHHHHHHHHHHHHHH----CC--CEEEEESSHHHHHHHHHH
T ss_pred eeecccCcC---C-HHHHHHHHHHHhh-----cccccccCccHHHHHHHHHHHc----CC--CcEEEcCCcHHHHHHHHH
Confidence 466644432 2 5556666666542 2346777778999999999998 43 699999999999987 56
Q ss_pred HhcC----CCCE---EEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc----c----CCcccCCC---C--C
Q 045431 144 IVFG----SNVT---MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA----E----NGFFPDLS---T--V 203 (433)
Q Consensus 144 ~l~~----~gd~---Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~---~--~ 203 (433)
.++. +||. |+++.+.|..+...+...|. .++.++... + .....+++ + .
T Consensus 110 ~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~ 177 (467)
T 1ax4_A 110 VLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGC------------KAINIVTEKAFDSETYDDWKGDFDIKKLKENIA 177 (467)
T ss_dssp HHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTC------------EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHH
T ss_pred HHHHhhccCCCccceEEEeccccchhhHHHhccCC------------ceecccccccccccccCCcccccCHHHHHHHHH
Confidence 6677 9998 99887777777777777774 444333211 0 01112222 1 1
Q ss_pred ----CCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEeccccc--c--------ccCCCCCcccccC----C
Q 045431 204 ----ARTDIIFFCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYAL--Y--------ISDDNPRSIFEIP----G 264 (433)
Q Consensus 204 ----~~~~~i~l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~--~--------~~~~~~~~~~~~~----~ 264 (433)
+++++|++++||||| |.+++.+++++|+++|++||++||+|+++.. . .+.+ .++..+. .
T Consensus 178 ~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 255 (467)
T 1ax4_A 178 QHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN--ATIKEVIFDMYK 255 (467)
T ss_dssp HHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTT--CCHHHHHHHHGG
T ss_pred hcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCC--Cchhhhhhhhcc
Confidence 268899999999999 8999999999999999999999999998653 1 1222 2222221 1
Q ss_pred CCcceEEEeccccccccc-ccceeeeecc-c-cccccCCcchhHHHHHHHhh--c--cC-CCcHHHHHHHHHhcCcCChh
Q 045431 265 AKEVAIETSSFSKYAGFT-GVRLGWTVIP-K-ELLFSDGFPVAKDFNRIVCT--C--FN-GASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~-G~r~G~l~~~-~-~~~~~~~~~~~~~~~~~~~~--~--~~-~~~~~~q~~~~~~l~~~~~~ 336 (433)
..| +++.|+||++|++ | ||++++ + +++ +.+...... . .. +.+...+.++...++....
T Consensus 256 ~~d--~~~~s~sK~~g~~~G---g~~~~~d~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~- 321 (467)
T 1ax4_A 256 YAD--ALTMSAKKDPLLNIG---GLVAIRDNEEIF--------TLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE- 321 (467)
T ss_dssp GCS--EEEEETTSTTCCSSC---EEEEESSCHHHH--------HHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-
T ss_pred ccc--eEEEeccccCCCCcc---eEEEeCCHHHHH--------HHHHhhccccccccccCCccchHHHHHHHHHHHhhh-
Confidence 122 5568999998765 3 677777 4 553 444333211 1 11 2233222222223321111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEE-------CCC--CChHHHHHHHHHcCCeEecC-CCCC-CC-
Q 045431 337 AVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQ-------FPG--RSSWDVFSEILEKTHVVTTP-GSGF-GP- 404 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~-------~~~--~~~~~~~~~l~~~~gi~v~~-g~~f-~~- 404 (433)
++..++..++++.+.+.|++.++.+..+.+++++|++ ++. .+..++...+++++||.+.| |..| +.
T Consensus 322 --~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~ 399 (467)
T 1ax4_A 322 --EEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD 399 (467)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred --hhHHHHHHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccc
Confidence 1222333466788888888778887777889999999 432 23456777764667999998 6432 11
Q ss_pred --------CCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 405 --------GGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 --------~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
...+++||++. .+++++++++++|++++
T Consensus 400 ~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~ 438 (467)
T 1ax4_A 400 PATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLK 438 (467)
T ss_dssp TTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTH
T ss_pred cccccccccccceEEEecccccCCHHHHHHHHHHHHHHH
Confidence 12479999975 58999999999998765
No 164
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.95 E-value=4e-27 Score=227.60 Aligned_cols=318 Identities=14% Similarity=0.071 Sum_probs=208.6
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCC--CCCHHHHHHHHHHHhccCCCC-CCcEEE-cCChHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAE--QGEKPLRAAIASTFYKDLGIE-EGDIFV-SDGAKCDI 139 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~la~~l~~~~~~~-~~~i~~-~~G~~~al 139 (433)
.+++++.|. .++|+.+.+++.+..... .....+++. ....++|+.+++++ +++ +++|++ |+|+++++
T Consensus 40 ~~~~~~~~~--~~~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~~i~~~t~g~t~al 110 (398)
T 2fyf_A 40 RDGRFGSGP--SKVRLEQLQTLTTTAAAL---FGTSHRQAPVKNLVGRVRSGLAELF----SLPDGYEVILGNGGATAFW 110 (398)
T ss_dssp SSCBCCSSS--CCCCHHHHHGGGTTTTTT---TTSCTTSHHHHHHHHHHHHHHHHHT----TCCTTCEEEEEETCHHHHH
T ss_pred CCccccCCC--CCCCHHHHHHHhhcCCCc---cCcCcCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEeCCchhHHH
Confidence 456776553 367888888876631100 111122221 12345666666655 776 479999 99999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhh-hhhHHHh--CCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAY-VDSSVIM--GQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPN 215 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~-~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~ 215 (433)
.+ +..++++| .+++..+.|... ....... | ..++.++.+. +...+.+..+++++|++++|+
T Consensus 111 ~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~--g~~~~~~i~~~~~~v~~~~~~ 175 (398)
T 2fyf_A 111 DAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFV------------GEPIIITSDP--GSAPEPQTDPSVDVIAWAHNE 175 (398)
T ss_dssp HHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTS------------CCCEEEECCT--TCCCCCCCCTTCSEEEEESEE
T ss_pred HHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCC------------CceEEEecCC--CCCCCccccCCCCEEEEeCcC
Confidence 97 57778887 223333333211 1123333 3 2566666652 222222334678999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~ 295 (433)
||||.+++.+++.++ +|+++|+|++|+.+.. +.++. +..+++.|+||++|++| ++||+++++++
T Consensus 176 nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~---~~~~~------~~di~~~s~sK~~~~~g-g~g~l~~~~~~ 239 (398)
T 2fyf_A 176 TSTGVAVAVRRPEGS------DDALVVIDATSGAGGL---PVDIA------ETDAYYFAPQKNFASDG-GLWLAIMSPAA 239 (398)
T ss_dssp TTTTEECCCCCCTTC------C-CEEEEECTTTTTTS---CCCGG------GCSEEEECTTSTTCSCS-SEEEEEECHHH
T ss_pred CCcceecchHHhhhh------cCCeEEEEeccccCCc---ccCcc------cCcEEEEecCcccCCCC-ceEEEEECHHH
Confidence 999999997766655 8999999999986432 22221 12388999999998664 69999999887
Q ss_pred cccCCcchhHHHHHH-----------------H----hhccCCCcHHHHHHHHHhcCcCChhH-HHHHHHHHHHHHHHHH
Q 045431 296 LFSDGFPVAKDFNRI-----------------V----CTCFNGASNISQAGGLACLSPEGFKA-VHEVIGFYKENTDIIV 353 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~-----------------~----~~~~~~~~~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~ 353 (433)
+ +.+.+. . .....+.+...+.++.++++...... +++++++++++++++.
T Consensus 240 ~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~ 311 (398)
T 2fyf_A 240 L--------SRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLY 311 (398)
T ss_dssp H--------HHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred H--------HHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5 333211 0 12223456666666666665211121 6888999999999999
Q ss_pred HHHhhc-CCeeec--C--CCccEEEEECC-CCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHH
Q 045431 354 ETFNSL-GFKVYG--G--KNAPYVWVQFP-GRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEAC 425 (433)
Q Consensus 354 ~~l~~~-g~~~~~--~--~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l 425 (433)
+.|+++ |+.+.. + ..++++|++++ +.+..++...|.++ ||.+.+|. ...+.+++||++. .+++++++++
T Consensus 312 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~--~~~~~~~iRis~~~~~t~e~i~~~~ 388 (398)
T 2fyf_A 312 SWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRAN-GIVDTEPY--RKLGRNQLRVAMFPAVEPDDVSALT 388 (398)
T ss_dssp HHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHT-TCBCCSCC--TTTCSSEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHC-CcEEecCc--ccCCCCEEEEEecCCCCHHHHHHHH
Confidence 999998 888763 3 23458999996 45667777777766 99999873 2233578999975 5899999999
Q ss_pred HHHHHhh
Q 045431 426 KRFKHLY 432 (433)
Q Consensus 426 ~~l~~~l 432 (433)
++|++++
T Consensus 389 ~~l~~~l 395 (398)
T 2fyf_A 389 ECVDWVV 395 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 165
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.95 E-value=5.1e-27 Score=234.27 Aligned_cols=327 Identities=13% Similarity=0.086 Sum_probs=222.0
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC--CcE--EEcCChHHHHHH-HHHhcCCC---
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE--GDI--FVSDGAKCDISR-LQIVFGSN--- 149 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~--~~i--~~~~G~~~al~~-l~~l~~~g--- 149 (433)
.+.+.+++.+++....+ .....|....+..++++++++++.+.+++++ +++ ++|+|+++++.+ +..+..+|
T Consensus 109 ~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 109 DEHHIAFLNEVYALQSQ-SNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CHHHHHHHHHHHHHHTT-CCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh-cCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 34444455554443221 2233454455777888899888887556553 788 999999999997 56666666
Q ss_pred -----CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccC
Q 045431 150 -----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAA 221 (433)
Q Consensus 150 -----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~ 221 (433)
|+|+++.|+|.++...++..| .+++.++.+.+..++.+ +++ .+++++|++++|+||||.+
T Consensus 188 ~g~~~d~Vi~~~~~~~~~~~~~~~~G------------~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~ 255 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAAFDKAAQYFG------------IKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVV 255 (514)
T ss_dssp HCCSSCEEEEETTSCTHHHHHHHHHT------------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCC
T ss_pred cCCCCCeEEEeCccchHHHHHHHHcC------------CeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccc
Confidence 999999999999999999999 47888888754332222 221 3578999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccC-----CCCCcccccCCCCcceEEEecccccccccccceeeeecccccc
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISD-----DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELL 296 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-----~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~ 296 (433)
.+ +++|.++|++||+++|+|++|+++... +.+.+..... ..+..+++.|++|+++ +|.++|+++++++.+
T Consensus 256 ~~---l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~-~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~ 330 (514)
T 3mad_A 256 DP---IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFR-LEGVTSVSADTHKYGY-GAKGTSVILYRRPDL 330 (514)
T ss_dssp CC---HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTT-STTCCEEEECTTTTTC-CCSSCEEEEESSHHH
T ss_pred cC---HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccccc-CCCCcEEEECchhccC-CCCCeEEEEEeCHHH
Confidence 88 788999999999999999999976541 1111111111 1234588999999974 888999999887664
Q ss_pred ccCCcchhHHHH--HHH----hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCCCc
Q 045431 297 FSDGFPVAKDFN--RIV----CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGKNA 369 (433)
Q Consensus 297 ~~~~~~~~~~~~--~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g 369 (433)
..........+. ... ..+....+.+++.+++..+. ..++++..++..++++++.+.|++. |+.+..+. .
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~ 406 (514)
T 3mad_A 331 LHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG---EEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-L 406 (514)
T ss_dssp HTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-S
T ss_pred hccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-e
Confidence 211000000000 000 00111111234444444432 3456888889999999999999987 88887654 4
Q ss_pred cEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 370 PYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
.++|+..++.+..++.+.+.++ ||.+ +|..| ++++|+++. .+++++++++++|++++
T Consensus 407 ~~~~~~~~~~~~~~l~~~L~~~-Gi~v-~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l 466 (514)
T 3mad_A 407 WVIAVASDELNIYQVMEEMAGR-GWRL-NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDAV 466 (514)
T ss_dssp SEEEEECSSSCHHHHHHHHHTT-TCBC-EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHhc-CCEe-ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4788887766677777777655 9988 55433 467999964 35799999999998875
No 166
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.9e-27 Score=232.52 Aligned_cols=330 Identities=8% Similarity=-0.010 Sum_probs=228.3
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC--CCcEEEcCChHHHHHH-HHHhcC-----
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISR-LQIVFG----- 147 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~--~~~i~~~~G~~~al~~-l~~l~~----- 147 (433)
+.++.+.+++.+++..... .....|....|..++++.+++++.+.++++ ++++++++|+++++.+ +..+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCV-ANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSS-CBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhh-cCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 4557888888888775432 233456556778899999999988766665 7899999999999987 455543
Q ss_pred CC---CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc-cCCcccC-CCC--CCCccEEEEcCCCCcccc
Q 045431 148 SN---VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA-ENGFFPD-LST--VARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 148 ~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~ 220 (433)
+| |+|+++.|+|+.+...+..+| .+++.++.++ +...+.+ +++ .+++++|++++|+||||.
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~~G------------~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~ 221 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYYFG------------MKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGI 221 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHHSC------------CEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCC
T ss_pred CCCCCceEEEeCCccHHHHHHHHHcC------------CeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCc
Confidence 56 899999999999999999998 4788888865 2222222 222 357899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccccC-----CCC-CcccccCCCCcceEEEecccccccccccceeeeecccc
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYISD-----DNP-RSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~-----~~~-~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~ 294 (433)
+.+ +++|.++|++||+++|+|++|+.+... +.. .+-.... ..+..+++.|++|+++ +|.++||++++++
T Consensus 222 ~~~---l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~-~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~ 296 (497)
T 3mc6_A 222 ADD---IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFR-VPGVTSISCDTHKYGF-APKGSSVIMYRNS 296 (497)
T ss_dssp CCS---CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTT-STTCCEEEEETTTTTC-CCSSCEEEECSSH
T ss_pred CCC---HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcccccc-CCCCcEEEECchhhcC-CCCCceeEEecCH
Confidence 988 778999999999999999999864321 100 1011111 1234588889999874 8889999999876
Q ss_pred ccccCCcchhHHHHHH--HhhccC-C---CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--CCeeecC
Q 045431 295 LLFSDGFPVAKDFNRI--VCTCFN-G---ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--GFKVYGG 366 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~--~~~~~~-~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~ 366 (433)
.+..........+... ...... . ....++.++...+. ...+++..++..++++++.+.|++. |+.+..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~ 373 (497)
T 3mc6_A 297 DLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG---ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN 373 (497)
T ss_dssp HHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC
T ss_pred HHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 6421100000000000 000000 0 01344555555554 2345778888899999999999994 8888765
Q ss_pred CCccEEEEECCCCChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec-cChhHHHHHHHHHHHhh
Q 045431 367 KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF-GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~l~~~l~~l~~~l 432 (433)
..+.++++..++.+..++...|.++ ||.+.++.. +..+|+++. .+.+++++++++|++++
T Consensus 374 ~~~~~v~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~l 434 (497)
T 3mc6_A 374 PRYSVISFSSKTLNIHELSDRLSKK-GWHFNALQK-----PVALHMAFTRLSAHVVDEICDILRTTV 434 (497)
T ss_dssp CCSSEEEEECTTTTHHHHHHHHHTT-TCBCEECCS-----SCCEEEECCTTTTCTHHHHHHHHHHHH
T ss_pred CCeeEEEEeCCCCCHHHHHHHHHhC-CEEEecCCC-----CCeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 6667777777766677777777655 998876542 346899864 48999999999998875
No 167
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.95 E-value=1.4e-27 Score=233.05 Aligned_cols=341 Identities=11% Similarity=0.050 Sum_probs=204.4
Q ss_pred cCCCCceEEecCCCCC--CC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIGDTT--EP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..+|+..+... +. .++.+.+++.+++.+. ....| +.....+|++.+++++ + .+++|++++|+
T Consensus 49 d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~----~~~~~-~~~~~~~la~~l~~~~----~-~~~~v~~~~sG 118 (429)
T 4e77_A 49 DVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG----LSFGA-PTEMEVKMAQLVTDLV----P-TMDMVRMVNSG 118 (429)
T ss_dssp ETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC----SCCSS-CCHHHHHHHHHHHHHS----T-TCSEEEEESSH
T ss_pred ECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC----cccCC-CCHHHHHHHHHHHhhC----C-CCCEEEEeCcH
Confidence 4456789999877642 32 5899999999998752 11234 3334455555555553 4 67899999999
Q ss_pred HHHHHH-HHH--hcCCCCEEEEeCCCChhhhhhHHHhCCccccc-----ccc---cccceEEEeecCccCCcccCCCCCC
Q 045431 136 KCDISR-LQI--VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQ-----KDA---EKYGKIEYMRCTAENGFFPDLSTVA 204 (433)
Q Consensus 136 ~~al~~-l~~--l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (433)
++++.+ +.. ...+++.|++.+++|++...........+... ..+ .....+..++.++...+...+....
T Consensus 119 sea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 198 (429)
T 4e77_A 119 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYP 198 (429)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcC
Confidence 999997 432 22467899999999988654222111100000 000 0001223333321101110011112
Q ss_pred CccEEEEcCCCCccccCC--CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAA--TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~--~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
+..++++++|+||+|..+ +.+.+++|.++|++||+++|+||+|.++ ..+.......+...+| +.||||.++ +
T Consensus 199 ~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pd----i~t~sK~~~-~ 272 (429)
T 4e77_A 199 QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPD----LTCLGKIIG-G 272 (429)
T ss_dssp TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCS----EEEEEGGGG-T
T ss_pred CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCC----eeeeccccc-C
Confidence 233456678876655333 4566999999999999999999999988 5443322222222223 348999998 8
Q ss_pred ccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH---
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF--- 356 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--- 356 (433)
|+|+||++++++++ +.+.. .....+++.+++++.++.++++.... +...++++++.+.+.+.|
T Consensus 273 G~~~G~~~~~~~~~--------~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 341 (429)
T 4e77_A 273 GMPVGAFGGRREVM--------NALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ---VGVYETLTELTDSLATGLRHA 341 (429)
T ss_dssp TSCCEEEEECHHHH--------TTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECHHHH--------HHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 22221 11334456788999888888762211 223333444444444444
Q ss_pred -hhcCCeeecCCCccEEEEECCCCC---------------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhH
Q 045431 357 -NSLGFKVYGGKNAPYVWVQFPGRS---------------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGN 420 (433)
Q Consensus 357 -~~~g~~~~~~~~g~~~~~~~~~~~---------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~ 420 (433)
.++++....+..|+++|+.++... ..++...++++ ||.+.|+. ...+|+++..++++
T Consensus 342 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~e~ 414 (429)
T 4e77_A 342 AKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSA------FEAGFMSLAHSNED 414 (429)
T ss_dssp HHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSST------TSCEECCTTCCHHH
T ss_pred HHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecC------CCCEEEeccCCHHH
Confidence 444544333346889999987431 15666666655 99999874 23578887889999
Q ss_pred HHHHHHHHHHhhC
Q 045431 421 VLEACKRFKHLYK 433 (433)
Q Consensus 421 l~~~l~~l~~~l~ 433 (433)
+++++++|+++++
T Consensus 415 i~~~l~~l~~~l~ 427 (429)
T 4e77_A 415 IQKTVNAARRCFA 427 (429)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 168
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.95 E-value=3.8e-28 Score=236.75 Aligned_cols=338 Identities=10% Similarity=0.046 Sum_probs=211.6
Q ss_pred CCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...|||+.|.. .+. .++.+.+++.+++.+. ....| ..++++++++++.+.++ .+++|++++|++
T Consensus 49 ~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ 118 (424)
T 2e7u_A 49 ADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG----LTFGA-----PSPLEVALAKKVKRAYP-FVDLVRFVNSGT 118 (424)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC----SCCSS-----CCHHHHHHHHHHHHHCT-TCCEEEEESSHH
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhC----CCCCC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCCHH
Confidence 45567899987752 232 6899999999998641 11123 34555555555554334 678999999999
Q ss_pred HHHHHH-HH--hcCCCCEEEEeCCCChhhhhhHH-HhCCcc-cc---cccccc---cceEEEeecCccCCcccCCCCC-C
Q 045431 137 CDISRL-QI--VFGSNVTMAVQDPSYPAYVDSSV-IMGQTG-EF---QKDAEK---YGKIEYMRCTAENGFFPDLSTV-A 204 (433)
Q Consensus 137 ~al~~l-~~--l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~-~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~ 204 (433)
+++.++ .. .+.+++.|++.+|+|+++..... ..|... .+ ...+.. ...++.++.++...+...+... +
T Consensus 119 ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 198 (424)
T 2e7u_A 119 EATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGE 198 (424)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCC
Confidence 999874 32 24456889999999988654332 111100 00 000000 0123444432111111001111 2
Q ss_pred CccEEEEcCCCCc-cccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSPNNP-TGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p~nP-tG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
+++ +++++|+|+ ||.++ +.+++++|.++ ++||++||+||+|.++ ..+.......+...++ +.||||+++ +
T Consensus 199 ~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~-~ 270 (424)
T 2e7u_A 199 EIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPD----LVTLGKILG-G 270 (424)
T ss_dssp GEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCS----EEEECGGGG-T
T ss_pred CEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcc----hhhhhhhhh-C
Confidence 344 566688655 89765 79999999999 9999999999999987 4332221112221223 239999998 7
Q ss_pred ccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
|+|+||++++++++ +.+.. .....+.+.+++++.++.++++.... .+++.++++++++++.+.|+++
T Consensus 271 G~~~G~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 340 (424)
T 2e7u_A 271 GLPAAAYAGRREIM--------EKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEV 340 (424)
T ss_dssp TSSCEEEEECHHHH--------TTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEcHHHH--------hhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 22222 11223445788899888888763211 1446677777777777777663
Q ss_pred ----CCeeecCCCccEEEEECCCC--------------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHH
Q 045431 360 ----GFKVYGGKNAPYVWVQFPGR--------------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNV 421 (433)
Q Consensus 360 ----g~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l 421 (433)
++....+..|.++|+.++.. ...++...++ ++||.+.|+.. ..+|+++..+++++
T Consensus 341 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~------~~~~~~~~~t~~~i 413 (424)
T 2e7u_A 341 LKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF------EAAFLSVAHREEDV 413 (424)
T ss_dssp HHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS------SCEECCTTCCHHHH
T ss_pred HHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC------CceEeeccCCHHHH
Confidence 54321123577999998741 1234566665 56999998742 35888888899999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 414 ~~~l~~l~~~l 424 (424)
T 2e7u_A 414 EKTLEALRKAL 424 (424)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 169
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.95 E-value=1.2e-26 Score=225.65 Aligned_cols=334 Identities=11% Similarity=0.046 Sum_probs=210.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhccc--CCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALST--QEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
..|+|..+++. .++.+.+++.+.+..... ......|+......++++.+.+++.+.+++++++|++++| ++++.+
T Consensus 26 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sG-t~a~~~ 102 (417)
T 3n0l_A 26 EGLEMIASENF--TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSG-SQANQG 102 (417)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHH
T ss_pred cCeeeecccCC--CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccH-HHHHHH
Confidence 35888766643 488899998887743210 0111123333334556654444544444778888999999 688886
Q ss_pred -HHHhcCCCCEEEEeCCCChhhhh---hHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----C-CCccEEEE
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYVD---SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----V-ARTDIIFF 211 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~i~l 211 (433)
+..++++||+|++++|+|+++.. .....|.. ..++.++.+. ++..+++. . .++++|++
T Consensus 103 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~v~~ 170 (417)
T 3n0l_A 103 VYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKM----------YESCFYGVEL--DGRIDYEKVREIAKKEKPKLIVC 170 (417)
T ss_dssp HHHHHSCTTCEEEEECC----------------CC----------SEEEEECCCT--TSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHhcCCCCEEEecccccccccchhhhhhhhcce----------eeeEeccCCC--CCCcCHHHHHHHHHhcCCeEEEE
Confidence 67789999999999999987654 22223311 2455555552 22233221 1 47899888
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCCCCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
++|+| |.+++ +++|.++|++||++||+||+|+ +..+.+..... + .+..++++|+||++ +|+|.||++
T Consensus 171 ~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~---~~~di~~~s~sK~l--~g~~~G~~~ 238 (417)
T 3n0l_A 171 GASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSP--F---PYAHVVSSTTHKTL--RGPRGGIIM 238 (417)
T ss_dssp CCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCC--T---TTCSEEEEESSTTT--CSCSCEEEE
T ss_pred CCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCc--c---ccceEEEeeCcccc--CCCCeeEEE
Confidence 88876 88888 8899999999999999999974 34343321111 1 12348899999987 788999999
Q ss_pred cc-ccccccCCcchhHHHHHHHhhccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec-CC
Q 045431 291 IP-KELLFSDGFPVAKDFNRIVCTCFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG-GK 367 (433)
Q Consensus 291 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~ 367 (433)
++ ++++ +.+......... +++...+.++..++......++++.+++++++++.+.+.|++.|+.+.. +.
T Consensus 239 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 310 (417)
T 3n0l_A 239 TNDEELA--------KKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGT 310 (417)
T ss_dssp ESCHHHH--------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred ECCHHHH--------HHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCCC
Confidence 98 4553 555554433322 2334444444444432222456788889999999999999988888764 34
Q ss_pred CccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCC----CCCCCeEEEeec------cChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFG----PGGEGFIRVSAF------GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~----~~~~~~iRi~~~------~~~~~l~~~l~~l~~~l 432 (433)
.+.++|+.+++ ....+.+..+++++||.+.++..+. +.....+|+++. .+++++++++++|++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l 386 (417)
T 3n0l_A 311 DNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADIL 386 (417)
T ss_dssp SSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 56789999863 2233444455566799998765332 122467999952 35899999999999876
No 170
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.95 E-value=6.4e-28 Score=235.83 Aligned_cols=338 Identities=13% Similarity=0.086 Sum_probs=209.1
Q ss_pred CCCCceEEecCCCC--CCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChH
Q 045431 60 YPDAEVISLGIGDT--TEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAK 136 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~ 136 (433)
.++...|||+.+.+ .+. .++.+.+++.+++.+. ....| +.....++++.+++++ + .+++|++++|++
T Consensus 53 ~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~----~~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~sgs 122 (434)
T 2epj_A 53 VDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARG----WLYGA-PGEAEVLLAEKILGYV----K-RGGMIRFVNSGT 122 (434)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC----SCCSS-CCHHHHHHHHHHHHHH----C-TTCEEEEESSHH
T ss_pred CCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC----CCCCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCCHH
Confidence 45667899988753 232 6899999999998752 11233 2223344555555543 4 578999999999
Q ss_pred HHHHHH-HH--hcCCCCEEEEeCCCChhhhhhHH-HhCCcc-cc---cccccc---cceEEEeecCccCCcccCCCCC-C
Q 045431 137 CDISRL-QI--VFGSNVTMAVQDPSYPAYVDSSV-IMGQTG-EF---QKDAEK---YGKIEYMRCTAENGFFPDLSTV-A 204 (433)
Q Consensus 137 ~al~~l-~~--l~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~-~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~ 204 (433)
+++.++ .. .+.+++.|++.+|+|+++..... ..+... .+ ...+.. ...+..++.++...+...+... +
T Consensus 123 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 202 (434)
T 2epj_A 123 EATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGD 202 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCC
Confidence 999874 33 14456788888999988654322 111000 00 000000 0124444432111111011111 2
Q ss_pred CccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++ ++++| +||||.++ +.+++++|.++|++||+++|+||+|+++ ..+.......+...+| +.||||.++ +
T Consensus 203 ~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~-~ 275 (434)
T 2epj_A 203 RIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGD----IIVLGKIIG-G 275 (434)
T ss_dssp GEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCS----EEEEEGGGG-T
T ss_pred CEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCC----eeeecchhc-C
Confidence 4555 45566 57799876 7999999999999999999999999977 3332221112221223 349999998 6
Q ss_pred ccceeeeeccccccccCCcchhHHHHH---HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 045431 283 GVRLGWTVIPKELLFSDGFPVAKDFNR---IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL 359 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (433)
|+|+||++++++++ +.+.. .....+.+.++++++++.++++.... +++.++++++++++.+.|+++
T Consensus 276 G~~~G~v~~~~~~~--------~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~ 344 (434)
T 2epj_A 276 GFPVGAVAGSREVM--------SLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEV 344 (434)
T ss_dssp TSSCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeeeeecHHHH--------HhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998775 22221 11223445788888888877752211 345566777777777777653
Q ss_pred ----CCeeecCCCccEEEEECCCC--------------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHH
Q 045431 360 ----GFKVYGGKNAPYVWVQFPGR--------------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNV 421 (433)
Q Consensus 360 ----g~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l 421 (433)
++....+..|.++|+.++.. ...++...+++ +||.+.||.. .++|+++..+++++
T Consensus 345 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~------~~~~~~~~~t~e~i 417 (434)
T 2epj_A 345 LDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNL------EAVFTGLPHQGEAL 417 (434)
T ss_dssp HHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTCSHHHH
T ss_pred HhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCC------CcEEEeccCCHHHH
Confidence 55322223678899998741 13456666654 5999998742 35788887899999
Q ss_pred HHHHHHHHHhh
Q 045431 422 LEACKRFKHLY 432 (433)
Q Consensus 422 ~~~l~~l~~~l 432 (433)
++++++|++++
T Consensus 418 ~~~l~~l~~~l 428 (434)
T 2epj_A 418 EIAVEGLRSSL 428 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 171
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.95 E-value=1.2e-26 Score=229.16 Aligned_cols=340 Identities=14% Similarity=0.117 Sum_probs=223.0
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhccc--CCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC----cEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALST--QEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG----DIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~----~i~~~~G~~~ 137 (433)
+.|+|..+++ +.|+.+.+++.+.+.+... ..+...|+...+..++++.+.+++.+.++++++ +|++++|+ +
T Consensus 45 ~~i~L~a~e~--~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~ 121 (483)
T 1rv3_A 45 VGLELIASEN--FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-P 121 (483)
T ss_dssp SSEECCTTCC--CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-H
T ss_pred cCeEEEcCCC--CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-H
Confidence 4799977765 4788999999888764210 011112443445577887777777776677764 49999999 6
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhhH--------HHhCCcccccccccccceEEEeecCccCCcccCCCC-----C
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDSS--------VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----V 203 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 203 (433)
++.+ +.++++|||+|++++|+|.++.... ...|.. ...+.++++++ ++..+++. .
T Consensus 122 an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~----------~~~v~~~~~~~-~~~iD~d~le~~i~ 190 (483)
T 1rv3_A 122 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIF----------FESMAYKVNPD-TGYIDYDRLEENAR 190 (483)
T ss_dssp HHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHH----------SEEEEECBCTT-TCSBCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccce----------EEEEECccccC-CCcCCHHHHHHHHh
Confidence 6665 7888999999999999998875422 222210 13444444533 23334322 2
Q ss_pred -CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCC-CCcccccCCCCcceEEEeccccccc
Q 045431 204 -ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDN-PRSIFEIPGAKEVAIETSSFSKYAG 280 (433)
Q Consensus 204 -~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~ 280 (433)
+++++|++ +++||+ .+++ +++|.++|++||+++|+|++|+. +...+. +.++ +. ..+++.|+||++
T Consensus 191 ~~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~---~~---~div~~s~~K~l- 258 (483)
T 1rv3_A 191 LFHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF---EH---CHVVTTTTHKTL- 258 (483)
T ss_dssp HHCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG---GT---CSEEEEESSGGG-
T ss_pred hcCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC---CC---CcEEEecCcccC-
Confidence 57899888 899988 7777 78999999999999999999873 333332 2222 11 238899999987
Q ss_pred ccccceeeeeccccccccCC-------cchhHHHHHHHhhc-cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHH
Q 045431 281 FTGVRLGWTVIPKELLFSDG-------FPVAKDFNRIVCTC-FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDII 352 (433)
Q Consensus 281 ~~G~r~G~l~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 352 (433)
+|+|.||++++++++.... ..+...+....... ..+++.....+...++......++++..+++.++++++
T Consensus 259 -~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l 337 (483)
T 1rv3_A 259 -RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRAL 337 (483)
T ss_dssp -CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 6889999999987531000 01123333222111 12233333333333443222235688889999999999
Q ss_pred HHHHhhcCCeeecCC-CccEEEEECC--CCChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEeecc--C----hh
Q 045431 353 VETFNSLGFKVYGGK-NAPYVWVQFP--GRSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSAFG--H----RG 419 (433)
Q Consensus 353 ~~~l~~~g~~~~~~~-~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~~~--~----~~ 419 (433)
.+.|.+.|+.+..+. ...++|+++. +.+..++. .++++.||.+. ||..+ +.+++++||++.. + ++
T Consensus 338 ~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~-~~L~~~gI~v~~~~~pg~~~-~~~~~~iRis~~~~~t~g~~~e 415 (483)
T 1rv3_A 338 SAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAE-KVLEACSIACNKNTCPGDKS-ALRPSGLRLGTPALTSRGLLEK 415 (483)
T ss_dssp HHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHH-HHHHHTTEECEEECCSSCSC-TTSCCEEEEECHHHHHTTCCHH
T ss_pred HHHHHhcCCEeccCCCCCceEEEeccCCCCCHHHHH-HHHHhCCcEEecCCCCCCCc-CCCCceEEeecCCcccCCCCHH
Confidence 999999899887653 3467899986 34555554 45566799999 88742 2346799999743 5 89
Q ss_pred HHHHHHHHHHHhh
Q 045431 420 NVLEACKRFKHLY 432 (433)
Q Consensus 420 ~l~~~l~~l~~~l 432 (433)
++++++++|++++
T Consensus 416 di~~~~~~l~~~l 428 (483)
T 1rv3_A 416 DFQKVAHFIHRGI 428 (483)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 172
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.95 E-value=6.4e-27 Score=226.21 Aligned_cols=313 Identities=15% Similarity=0.077 Sum_probs=217.8
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++|||+.+.+++ ++.+.+++.+.+.. ..|.+..+..++++++++++ +.+ ++++++|+++++.+ +
T Consensus 31 ~~id~~~~~~~~--~~~v~~a~~~~~~~-------~~y~~~~~~~~l~~~la~~~----~~~--~~v~~~~Gt~a~~~~l 95 (399)
T 2oga_A 31 PFLDLKAAYEEL--RAETDAAIARVLDS-------GRYLLGPELEGFEAEFAAYC----ETD--HAVGVNSGMDALQLAL 95 (399)
T ss_dssp CSCCHHHHHHHT--HHHHHHHHHHHHHH-------TCCSSSHHHHHHHHHHHHHT----TSS--EEEEESCHHHHHHHHH
T ss_pred cccccCcCCCCC--CHHHHHHHHHHHhc-------CCCCCchhHHHHHHHHHHHH----CCC--eEEEecCHHHHHHHHH
Confidence 578999888754 48888899888753 14655678899999999997 543 56667777899887 5
Q ss_pred HHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEEcCCCC
Q 045431 143 QIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFFCSPNN 216 (433)
Q Consensus 143 ~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~p~n 216 (433)
..+ +++||+|++++|+|+++...++..| .+++.++.+++ ++..+++. .+++++|+ |+|
T Consensus 96 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n 159 (399)
T 2oga_A 96 RGLGIGPGDEVIVPSHTYIASWLAVSATG------------ATPVPVEPHED-HPTLDPLLVEKAITPRTRALL---PVH 159 (399)
T ss_dssp HHTTCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCSS-SSSBCHHHHHHHCCTTEEEEC---CBC
T ss_pred HHhCCCCcCEEEECCCccHHHHHHHHHCC------------CEEEEEecCCC-CCCcCHHHHHHhcCCCCeEEE---EeC
Confidence 677 7999999999999999999888888 47788887642 22223221 24677665 578
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEecc--cccccccccceeeeecc-
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIP- 292 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~- 292 (433)
|||.+.+ +++|.++|+++|+++|+|++|+.+. +++ ..+..+ . .+++.|+ ||.+|.+| |.||++++
T Consensus 160 ~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~--~~~~~~---~--di~~~S~~~sK~~~~~G-~~g~~~~~~ 228 (399)
T 2oga_A 160 LYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG--RRIGAG---S--SVAAFSFYPGKNLGCFG-DGGAVVTGD 228 (399)
T ss_dssp GGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT--EETTCT---T--CEEEEECCTTSSSCCSS-CCEEEEESC
T ss_pred CcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCC--eecccc---c--CEEEEeCCCCccCCcCC-ceEEEEeCC
Confidence 9999887 7899999999999999999998653 322 112111 2 3788888 79998668 99999987
Q ss_pred ccccccCCcchhHHHHHHHhhc------------cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-
Q 045431 293 KELLFSDGFPVAKDFNRIVCTC------------FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL- 359 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 359 (433)
++++ +.+....... ....+.+.+.++.+.++ +++...++.+++++++.+.|+++
T Consensus 229 ~~~~--------~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~ 295 (399)
T 2oga_A 229 PELA--------ERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA-----HLDSWNGRRSALAAEYLSGLAGLP 295 (399)
T ss_dssp HHHH--------HHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHH--------HHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCC
Confidence 5553 4454433221 12345666665555553 23455666677788888889887
Q ss_pred CCeee-cCCCccEEEE--ECCCCChHHHHHHHHHcCCeEecCCCCCCCC--------C-------------CCeEEEee-
Q 045431 360 GFKVY-GGKNAPYVWV--QFPGRSSWDVFSEILEKTHVVTTPGSGFGPG--------G-------------EGFIRVSA- 414 (433)
Q Consensus 360 g~~~~-~~~~g~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~--------~-------------~~~iRi~~- 414 (433)
|+.+. .+..+.++|+ .+...+..++...|.+ +||.+.++...... + .+++||++
T Consensus 296 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~ 374 (399)
T 2oga_A 296 GIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDA-RGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIG 374 (399)
T ss_dssp TCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHH-TTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCS
T ss_pred CccccCCCCCCcceeEEEEEECCCHHHHHHHHHH-CCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCC
Confidence 77664 2445565653 3333355666666655 59999875421000 0 25799996
Q ss_pred -ccChhHHHHHHHHHHHhh
Q 045431 415 -FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 415 -~~~~~~l~~~l~~l~~~l 432 (433)
..++++++++++.|++++
T Consensus 375 ~~~t~edi~~~~~~l~~~~ 393 (399)
T 2oga_A 375 PHLERPQALRVIDAVREWA 393 (399)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 458999999999998875
No 173
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.95 E-value=1.1e-26 Score=224.79 Aligned_cols=330 Identities=11% Similarity=0.069 Sum_probs=211.7
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHh-hcccCCCCC-CCCCCCCCHHHH----HHHHHHHhccCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSY-ALSTQEGYS-GYGAEQGEKPLR----AAIASTFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~-~~~~~~~~~-~Y~~~~g~~~lr----~~la~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
.+++++.+.+ .|+.+.+++.+.+. ......... .|.......+++ +.+++++ ++++++|++++| ++
T Consensus 25 ~~~~~~~~~~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~----g~~~~~i~~~sG-t~ 96 (405)
T 2vi8_A 25 KIELIASENF---VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF----GAEHANVQPHSG-AQ 96 (405)
T ss_dssp SEECCTTCCC---CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH----TCSEEECCCSSH-HH
T ss_pred ceeeccCccc---CCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh----CCCceEEEecCc-HH
Confidence 4667755543 38999999988874 211000001 121112234555 4666665 777666667777 88
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhhhh---HHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CC-Ccc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYVDS---SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VA-RTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~ 207 (433)
++.+ +..++++||+|++++|+|+.+... ....|. + ..++.++.+++ ++..+++. .. +++
T Consensus 97 a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~-~---------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~ 165 (405)
T 2vi8_A 97 ANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGV-Q---------YNFVAYGVDPE-THVIDYDDVREKARLHRPK 165 (405)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHH-H---------SEEEEECBCTT-TCSBCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEEecccccchhcccchhhhccc-e---------eEEEecccccc-cCCcCHHHHHHHHHhcCCe
Confidence 8886 677789999999999999887531 122331 0 24556665422 22233221 12 678
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccc-ccccce
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG-FTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~-~~G~r~ 286 (433)
+|++ +|+|+ |...+ +++|.++|++||+++|+||+|+.......... ..+.. .+ ++++|+||+++ ++|
T Consensus 166 ~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~-~~~~~-~d--i~~~s~sK~~~g~~g--- 233 (405)
T 2vi8_A 166 LIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHP-NPVPY-AH--FVTTTTHKTLRGPRG--- 233 (405)
T ss_dssp EEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC-CSTTT-CS--EEEEESSSTTCCCSC---
T ss_pred EEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCcCC-Ccccc-CC--EEEEeccccCCCCCC---
Confidence 7776 55553 44444 79999999999999999999994322211111 11211 23 88999999996 445
Q ss_pred eeeeccccccccCCcchhHHHHHHHhhccCCC-cHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNGA-SNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
||++++++++ +.+.........+. +.....++.++++.....++++++++++++++++.+.|+++|+.+..
T Consensus 234 G~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 305 (405)
T 2vi8_A 234 GMILCQEQFA--------KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVS 305 (405)
T ss_dssp EEEEECHHHH--------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred eEEEEcHHHH--------HHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEec
Confidence 9999997764 55554432222233 34444433455542212467889999999999999999988888876
Q ss_pred C-CCccEEEEECC--CCChHHHHHHHHHcCCeEecCCCC----CCCCCCCeEEEeec------cChhHHHHHHHHHHHhh
Q 045431 366 G-KNAPYVWVQFP--GRSSWDVFSEILEKTHVVTTPGSG----FGPGGEGFIRVSAF------GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 366 ~-~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~----f~~~~~~~iRi~~~------~~~~~l~~~l~~l~~~l 432 (433)
+ ..++++|+.++ +.+..++...+ .++||.+.+|.. +++..++++|+++. .+++++++++++|++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~ 384 (405)
T 2vi8_A 306 GGTDNHLLLVDLRPQQLTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVL 384 (405)
T ss_dssp GSCSSSEEEEECGGGTCCHHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEccCCCCCHHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHH
Confidence 4 46889999997 33555666555 556999999863 33334578999975 37999999999999876
Q ss_pred C
Q 045431 433 K 433 (433)
Q Consensus 433 ~ 433 (433)
+
T Consensus 385 ~ 385 (405)
T 2vi8_A 385 K 385 (405)
T ss_dssp T
T ss_pred h
Confidence 3
No 174
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=1e-26 Score=226.57 Aligned_cols=336 Identities=13% Similarity=0.084 Sum_probs=198.9
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhc-ccCCCCCCCCCCCCCHHHHHHHH-HHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYAL-STQEGYSGYGAEQGEKPLRAAIA-STFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~Y~~~~g~~~lr~~la-~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
..+++..+.+. .++.+.+++.+.+.+. ........|.......++.+.++ +++.+.++++... ++++|+++++.+
T Consensus 33 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-v~~~~Gs~a~~~ 109 (425)
T 3ecd_A 33 SQVELIASENI--VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHAN-VQPHSGAQANGA 109 (425)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHH
T ss_pred cceeeecccCC--CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCce-eecCchHHHHHH
Confidence 36888776653 3899999998877421 10001112212122222333333 3333333655433 346677778876
Q ss_pred -HHHhcCCCCEEEEeCCCChhhh-hhH--HHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEEE
Q 045431 142 -LQIVFGSNVTMAVQDPSYPAYV-DSS--VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIFF 211 (433)
Q Consensus 142 -l~~l~~~gd~Vl~~~p~~~~~~-~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~l 211 (433)
+..++++||+|++++|+|++.. ... ...|.. ...+.++.+++ .+..+++. ..++++|++
T Consensus 110 al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~ 178 (425)
T 3ecd_A 110 VMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKW----------FNALQYGVSRD-TMLIDYDQVEALAQQHKPSLIIA 178 (425)
T ss_dssp HHHHHCCTTCEEEEECC----------------------------CEEEEECCCTT-TSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHccCCCCEEEEcccccccceecchhhhhcccc----------eeeeecCCCcc-cCccCHHHHHHHHhhcCCcEEEE
Confidence 6778899999999999998722 221 123311 24455555432 22233221 147899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
++|+||+ ..+ +++|.++|++||++||+||+|+. +.+.+...+... . ..++++|+||++ +|+|.||++
T Consensus 179 ~~~~~~~--~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~--~---~di~~~s~sK~l--~g~~~g~~~ 246 (425)
T 3ecd_A 179 GFSAYPR--KLD---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE--H---AHVVTSTTHKTL--RGPRGGFVL 246 (425)
T ss_dssp ECSCCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG--T---CSEEEEESSGGG--CCCSCEEEE
T ss_pred ccccCCC--cCC---HHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh--c---CcEEEecCCccc--CCCCcEEEE
Confidence 9999964 333 78999999999999999999653 334433222211 1 128899999988 678999999
Q ss_pred ccccccccCCcchhHHHHHHHhhccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-CC
Q 045431 291 IPKELLFSDGFPVAKDFNRIVCTCFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG-KN 368 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~ 368 (433)
++++.+ .+.+......... +++...+.++..++.....+++++.+++++++++.+.+.|++.|+.+..+ ..
T Consensus 247 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 319 (425)
T 3ecd_A 247 TNDEEI-------AKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTD 319 (425)
T ss_dssp ESCHHH-------HHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred eCCHHH-------HHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCC
Confidence 986443 2444443322222 23333333333333322224567888999999999999999989888753 46
Q ss_pred ccEEEEECCC-CChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEeec--c----ChhHHHHHHHHHHHhh
Q 045431 369 APYVWVQFPG-RSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSAF--G----HRGNVLEACKRFKHLY 432 (433)
Q Consensus 369 g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~~--~----~~~~l~~~l~~l~~~l 432 (433)
++++|+.++. ....+.+..+++++||.+. ||..+.+...+++|+++. . ++++++++++.|++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l 394 (425)
T 3ecd_A 320 NHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVF 394 (425)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHH
Confidence 7889999862 2233444455566799999 554443444578999942 2 4899999999998875
No 175
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.95 E-value=1.9e-27 Score=234.15 Aligned_cols=343 Identities=9% Similarity=0.055 Sum_probs=220.6
Q ss_pred cCCCCceEEecCC--CCCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCCh
Q 045431 59 KYPDAEVISLGIG--DTTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGA 135 (433)
Q Consensus 59 ~~~~~~~i~l~~g--~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~ 135 (433)
..+++..|||..| ...+ ..++.+.+++.+++.+... .|....+..+.+.++++.+.+..+.+.++|++++|+
T Consensus 51 d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sG 125 (472)
T 3hmu_A 51 DSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPY-----YNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGG 125 (472)
T ss_dssp ETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSC-----CCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSH
T ss_pred ECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccc-----cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCH
Confidence 3456788999877 3333 3689999999999976431 222223344566666666655446677899999999
Q ss_pred HHHHHH-HHHhcC--------CCCEEEEeCCCChhhhhhHHHhCCcccc-cccccccceEEEeecCc--c-CCc------
Q 045431 136 KCDISR-LQIVFG--------SNVTMAVQDPSYPAYVDSSVIMGQTGEF-QKDAEKYGKIEYMRCTA--E-NGF------ 196 (433)
Q Consensus 136 ~~al~~-l~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~--~-~~~------ 196 (433)
++++.. +..+.. +++.|++.+|+|+++......++....+ ..++ ....+..++... . +++
T Consensus 126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~ 204 (472)
T 3hmu_A 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEF 204 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHH
Confidence 999987 444432 4689999999999987666655532211 1111 112344444221 0 000
Q ss_pred ----ccCCCC-----C-CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 197 ----FPDLST-----V-ARTDIIFFCSP-NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 197 ----~~~~~~-----~-~~~~~i~l~~p-~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
..++++ . +++.+ ++++| +|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+.......+..
T Consensus 205 ~~~~~~~le~~i~~~~~~~~aa-vi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v 283 (472)
T 3hmu_A 205 GLARARELEEAILELGENRVAA-FIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGI 283 (472)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEE-EEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCEEE-EEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCC
Confidence 111221 1 23444 55555 66777655 889999999999999999999999998866654332222322
Q ss_pred CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHH--HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNR--IVCTCFNGASNISQAGGLACLSPEGFKAVHEVI 342 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 342 (433)
.+| ++ +|||.++.+|+|+||++++++++ +.+.. +....+.+.++++++++.++|+.... +.+.
T Consensus 284 ~pd-i~---t~sK~l~gg~~plG~v~~~~~i~--------~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~ 348 (472)
T 3hmu_A 284 RPH-IM---TIAKGLSSGYAPIGGSIVCDEVA--------HVIGKDEFNHGYTYSGHPVAAAVALENLRILEE---ENIL 348 (472)
T ss_dssp CCS-EE---EECGGGTTTSSCCEEEEEEHHHH--------HHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH---TTHH
T ss_pred CCc-ee---eechhhhcCCcceEEEEECHHHH--------HhcccCCccccCCCCCCHHHHHHHHHHHHHHHH---hHHH
Confidence 233 23 68999974449999999998875 44421 12334566789999999988863211 3445
Q ss_pred HHHH-HHHHHHHHHHhhc----CCeeecCCCccEEEEECCCCC-------------hHHHHHHHHHcCCeEecCCCCCCC
Q 045431 343 GFYK-ENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPGRS-------------SWDVFSEILEKTHVVTTPGSGFGP 404 (433)
Q Consensus 343 ~~~~-~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~l~~~~gi~v~~g~~f~~ 404 (433)
++++ ++.+++.+.|+++ .+..+.+ .|.++++.+.... ...+...+++ +||.+.|+.
T Consensus 349 ~~~~~~~~~~l~~~L~~l~~~~~v~~vr~-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g---- 422 (472)
T 3hmu_A 349 DHVRNVAAPYLKEKWEALTDHPLVGEAKI-VGMMASIALTPNKASRAKFASEPGTIGYICRERCFA-NNLIMRHVG---- 422 (472)
T ss_dssp HHHHHTHHHHHHHHHHGGGGSTTEEEEEE-ETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-TTBCCEEET----
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCceEEEEEecCccccccccchhHHHHHHHHHHHHH-CCcEEEecC----
Confidence 5566 6666776666554 2333333 5677777775211 3455566665 599998852
Q ss_pred CCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 405 GGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 ~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
+++||+ +..+++++++++++|++++
T Consensus 423 ---~~iRi~p~~~~t~e~i~~~l~~l~~~l 449 (472)
T 3hmu_A 423 ---DRMIISPPLVITPAEIDEMFVRIRKSL 449 (472)
T ss_dssp ---TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 789999 6779999999999999875
No 176
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.95 E-value=1.4e-26 Score=225.33 Aligned_cols=332 Identities=14% Similarity=0.098 Sum_probs=200.1
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcc-cC-CCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALS-TQ-EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
.+.+..+.+. .++.+.+++.+.+.+.. .. .....|........+.+...+++.+.+++++++|++++| ++++.+
T Consensus 32 ~~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sG-s~a~~~a 108 (420)
T 3gbx_A 32 HIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSG-SQANFAV 108 (420)
T ss_dssp SEECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHH
T ss_pred ceeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCc-HHHHHHH
Confidence 4555544432 68999999988874311 00 111122222333444443334444444777888888888 567776
Q ss_pred HHHhcCCCCEEEEeCCCChhhhh---hHHHhCCcccccccccccceEEEeecCccCCcccC-CCC---CCCccEEEEcCC
Q 045431 142 LQIVFGSNVTMAVQDPSYPAYVD---SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST---VARTDIIFFCSP 214 (433)
Q Consensus 142 l~~l~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~i~l~~p 214 (433)
+..++++||+|++++|+|+.+.. .....|.. ...+.++.+.+...+.+ +++ ..++++|++++|
T Consensus 109 ~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 178 (420)
T 3gbx_A 109 YTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKL----------YNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFS 178 (420)
T ss_dssp HHHHCCTTCEEEEEEEC------------CHHHH----------SEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCT
T ss_pred HHHhcCCCCEEEecchhhcceeccchhhhhcccc----------eeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecC
Confidence 68889999999999999987431 11122210 13444555432222211 221 125899999899
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccc
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK 293 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~ 293 (433)
+||+ ..+ +++|.++|++||++||+||+|+. +...+..... +. ...++++|+||+++ |.+.||+++++
T Consensus 179 ~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~---~~di~~~s~sK~~~--g~~gg~~~~~~ 246 (420)
T 3gbx_A 179 AYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP---HAHVVTTTTHKTLA--GPRGGLILAKG 246 (420)
T ss_dssp TCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT---TSSEEEEESSGGGC--SCSCEEEEESS
T ss_pred ccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc---cCCEEEeecccCCC--CCCceEEEEcC
Confidence 9974 455 88999999999999999999864 3333322211 11 13388999999984 55669999988
Q ss_pred ---cccccCCcchhHHHHHHHhhccC-CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-CC
Q 045431 294 ---ELLFSDGFPVAKDFNRIVCTCFN-GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG-KN 368 (433)
Q Consensus 294 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~ 368 (433)
.+. +.+......... +++...+.++..++......++++++++++++++.+.+.|++.|+.+..+ ..
T Consensus 247 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 318 (420)
T 3gbx_A 247 GDEELY--------KKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTE 318 (420)
T ss_dssp CCHHHH--------HHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred CcHHHH--------HHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCC
Confidence 442 444433322222 23344444333333322235668889999999999999999989888653 56
Q ss_pred ccEEEEECCC-CChHHHHHHHHHcCCeEecC-------CCCCCCCCCCeEEEeec------cChhHHHHHHHHHHHhh
Q 045431 369 APYVWVQFPG-RSSWDVFSEILEKTHVVTTP-------GSGFGPGGEGFIRVSAF------GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 369 g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~-------g~~f~~~~~~~iRi~~~------~~~~~l~~~l~~l~~~l 432 (433)
++++|+.++. ....+.+..+++++||.+.| |..|+ .+.+||++. .++++++++++.|++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~---~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l 393 (420)
T 3gbx_A 319 NHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV---TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVL 393 (420)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTT---CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCC---CcceEEecchhcccCCCHHHHHHHHHHHHHHH
Confidence 7899999863 22344445555667999998 33333 345999963 34789999999998875
No 177
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=8.9e-26 Score=217.17 Aligned_cols=286 Identities=13% Similarity=0.149 Sum_probs=195.6
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAE 180 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~ 180 (433)
+..+..+|++++++++ +.+ ++|++++| ++++.+ +..++++||+|++++|+|++....+... ...+
T Consensus 50 ~~~~~~~l~~~la~~~----~~~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g------- 116 (386)
T 1cs1_A 50 GNPTRDVVQRALAELE----GGA-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC------- 116 (386)
T ss_dssp CCHHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTS-------
T ss_pred CCccHHHHHHHHHHHh----CCC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcC-------
Confidence 4567789999999998 554 77888777 788887 5677899999999999999865544221 2222
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.+++.++.++.+.+...+ .+++++|++++|+||||.+++ +++|.++|++||+++|+||+|+.+.... ++
T Consensus 117 --~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~- 185 (386)
T 1cs1_A 117 --YRVLFVDQGDEQALRAAL--AEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN---PL- 185 (386)
T ss_dssp --CEEEEECTTCHHHHHHHH--HTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---GG-
T ss_pred --CEEEEeCCCCHHHHHHhh--ccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC---cc-
Confidence 367777664211111111 257899999999999999997 8899999999999999999999765431 22
Q ss_pred ccCCCCcceEEEecccccccccccce-eeeeccc-cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPK-ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
. .+.++++.|+||+++.+|.|+ ||+++++ +++ +.+...........+++.+.++.+.++ ++
T Consensus 186 ~----~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~--------~~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~ 248 (386)
T 1cs1_A 186 A----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV--------TELAWWANNIGVTGGAFDSYLLLRGLR-----TL 248 (386)
T ss_dssp G----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH--------HHHHHHHHHHTCBCCHHHHHHHHHHHT-----TH
T ss_pred c----cCceEEEEcCcccccCCCCceeEEEEeCcHHHH--------HHHHHHHHhcCCCCCHHHHHHHHhccc-----HH
Confidence 2 234689999999998889887 9999987 553 556555544344467777776666554 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCeee-cC----------------CCccEEEEECCCCChHHHHHHHHHcCCeEecCCC
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GFKVY-GG----------------KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGS 400 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 400 (433)
....+...++.+.+.+.|+++ .+... .+ ..+.++.+.+++. .. .+...+.+.||.+.+++
T Consensus 249 ~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~l~~~gi~~~~~~ 326 (386)
T 1cs1_A 249 VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQ-TLRRFLGGLSLFTLAES 326 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HH-HHHHHHHTCSSSEEBSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HH-HHHHHHHhCCcceEccc
Confidence 555666777888888888775 22211 11 1366777777643 33 44455566799887421
Q ss_pred CCC-------------------------CCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 401 GFG-------------------------PGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 401 ~f~-------------------------~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
++ ...++++||++.. ++++++.+.+.|+++.
T Consensus 327 -~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 327 -LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp -CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred -CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 11 0125899999744 4666777777776654
No 178
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.94 E-value=3e-26 Score=215.82 Aligned_cols=277 Identities=16% Similarity=0.101 Sum_probs=187.9
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHH----HhCCcccccccccccc
Q 045431 109 PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSV----IMGQTGEFQKDAEKYG 183 (433)
Q Consensus 109 ~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~ 183 (433)
+|++.+++++ +.+ +.|++++| ++++.+ +..++++||+|++++|+|+++...+. ..| .
T Consensus 2 ~l~~~la~~~----g~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g------------~ 63 (331)
T 1pff_A 2 ALEGKIAKLE----HAE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG------------V 63 (331)
T ss_dssp HHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT------------C
T ss_pred hHHHHHHHHh----CCC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcC------------C
Confidence 6899999998 665 67777777 788887 56678999999999999999876653 345 3
Q ss_pred eEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH-cCCEEEEeccccccccCCCCCccccc
Q 045431 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKD-NGSIIVYDSAYALYISDDNPRSIFEI 262 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~-~~~~li~De~~~~~~~~~~~~~~~~~ 262 (433)
+++.++..+...+...+ .+++++|++++|+||||.+++ +++|.++|++ ||+++|+|++|+.+... .++ .
T Consensus 64 ~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~---~~~-~- 133 (331)
T 1pff_A 64 EVDFIDMAVPGNIEKHL--KPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT---NPL-D- 133 (331)
T ss_dssp EEEEECTTSTTHHHHTC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC---CGG-G-
T ss_pred EEEEeCCCCHHHHHHhh--cCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC---Chh-h-
Confidence 66777653211121112 257899999999999999997 8899999999 99999999999865432 122 2
Q ss_pred CCCCcceEEEecccccccccccc-eeeeeccc-cccccCCcchhHHHHHHHhh-ccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 263 PGAKEVAIETSSFSKYAGFTGVR-LGWTVIPK-ELLFSDGFPVAKDFNRIVCT-CFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 263 ~~~~~~vi~i~S~sK~~~~~G~r-~G~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
.++++++.|+||+++.+|.| +||+++++ +++ +.+...... .....+.+.+.++...++ .+.
T Consensus 134 ---~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~ 197 (331)
T 1pff_A 134 ---LGVDIVVHSATKYINGHTDVVAGLVCSRADIIA--------KVKSQGIKDITGAIISPHDAWLITRGTL-----TLD 197 (331)
T ss_dssp ---GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHH--------HHHHTCCCCCCCCCCCHHHHHHHHHHHH-----HHH
T ss_pred ---cCCcEEEEECccccCCCCCceEEEEEeCcHHHH--------HHHHHHHHhhcCCCCCHHHHHHHHcCcc-----hHH
Confidence 23569999999999989999 79999988 664 555544433 334567777766555543 123
Q ss_pred HHHHHHHHHHHHHHHHHhhc---------------CCeeec---CCCccEEEEECCCCChHHHHHHHHHcCCeEecCCCC
Q 045431 340 EVIGFYKENTDIIVETFNSL---------------GFKVYG---GKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGSG 401 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~---------------g~~~~~---~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 401 (433)
...+...++.+.+.+.+++. ++.+.. ...+.++++.++ +.. .+..+++++||.+++++.
T Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~l~~~gI~~~~~s~ 274 (331)
T 1pff_A 198 MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GLE-KAKKVLDNCHVVSLAVSL 274 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SHH-HHHHHHHTCSSSEECSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHH-HHHHHHHhCCCceeccCC
Confidence 33444555555555555432 122111 124567778876 333 445556677998765531
Q ss_pred CC------------------------CCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 402 FG------------------------PGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 402 f~------------------------~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
-+ ...++++|+++. .++++++.+++.|++++
T Consensus 275 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~~ 331 (331)
T 1pff_A 275 GGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLVL 331 (331)
T ss_dssp CSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC-
T ss_pred CCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 10 012579999964 46888999999988753
No 179
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.94 E-value=4.4e-26 Score=220.38 Aligned_cols=281 Identities=14% Similarity=0.153 Sum_probs=190.3
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH----hCCccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI----MGQTGEFQKDAE 180 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~ 180 (433)
...+|++.++++. +. +++++++|+++++.+ +..++++||+|++++|+|+++...+.. .|
T Consensus 82 ~~~~l~~~la~~~----g~--~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g---------- 145 (414)
T 3ndn_A 82 TVSVFEERLRLIE----GA--PAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWG---------- 145 (414)
T ss_dssp HHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTT----------
T ss_pred HHHHHHHHHHHHH----CC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcC----------
Confidence 3455666666654 43 578888888999987 677889999999999999998766644 66
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+.+ +++|.++|++||+++|+|++|+..... .++
T Consensus 146 --~~~~~v~~~d~~~l~~ai--~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~---~~~- 214 (414)
T 3ndn_A 146 --VQTVFVDGDDLSQWERAL--SVPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ---QGF- 214 (414)
T ss_dssp --CEEEEECTTCHHHHHHHT--SSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC---CCG-
T ss_pred --cEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC---Cch-
Confidence 477778765211111111 357899999999999999987 788999999999999999999843221 112
Q ss_pred ccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
.. +..+++.|+||.++.+| +++|+++++++.+ .+.+...........++....++...+ +.+.
T Consensus 215 ~~----g~div~~S~sK~l~~~G~~~~G~vv~~~~~~-------~~~l~~~~~~~g~~~~~~~a~~~~~~l-----~~l~ 278 (414)
T 3ndn_A 215 PL----GVDVVVYSGTKHIDGQGRVLGGAILGDREYI-------DGPVQKLMRHTGPAMSAFNAWVLLKGL-----ETLA 278 (414)
T ss_dssp GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHHH-------TTHHHHHHHHHCCCCCHHHHHHHHHHG-----GGHH
T ss_pred hc----CCCeEeccCCccccCCCCceEEEEEECHHHH-------HHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHHH
Confidence 22 23488999999998768 8999999998875 124443333333334555544444333 3346
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCe-eecCC----------------CccEEEEECCCC-----C-hHHHHHHHHHcCCeE
Q 045431 340 EVIGFYKENTDIIVETFNSL-GFK-VYGGK----------------NAPYVWVQFPGR-----S-SWDVFSEILEKTHVV 395 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~----------------~g~~~~~~~~~~-----~-~~~~~~~l~~~~gi~ 395 (433)
...++..++++.+.+.|+++ ++. +..|. .|.++|+.+++. . ...++.. ++..++.
T Consensus 279 ~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~-l~~~~~~ 357 (414)
T 3ndn_A 279 IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDK-MRLIDIS 357 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHH-CSSSEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHh-CccceEc
Confidence 66677788889999999876 443 22221 477899999753 1 2233333 4455778
Q ss_pred ecCCCCCCC---------------------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 396 TTPGSGFGP---------------------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 396 v~~g~~f~~---------------------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..|..+.. ..++.+|||+.. |+.+.+++.|+++|
T Consensus 358 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al 413 (414)
T 3ndn_A 358 NNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL 413 (414)
T ss_dssp SCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred CCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 887875531 236789999754 55556666666655
No 180
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.94 E-value=4.1e-25 Score=212.94 Aligned_cols=314 Identities=13% Similarity=0.108 Sum_probs=210.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCC-CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYG-AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR- 141 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~- 141 (433)
++++++.+.|.+ ++.+.+++.+.+.. . .|. +..+..+||+++++++ +.+ ++++++|+++++.+
T Consensus 23 ~~~~l~~~~p~~--~~~~~~a~~~~~~~----~---~~~~~~~~~~~l~~~la~~~----~~~--~~i~~~~gt~al~~~ 87 (391)
T 3dr4_A 23 DLPRISVAAPRL--DGNERDYVLECMDT----T---WISSVGRFIVEFEKAFADYC----GVK--HAIACNNGTTALHLA 87 (391)
T ss_dssp -----CCCCCCC--CSSHHHHHHHHHHH----T---CCSSCSHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHHH
T ss_pred CCceeccCCCCC--CHHHHHHHHHHHHc----C---CccCCChHHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHHH
Confidence 578899998854 57778888887753 1 243 5678999999999998 543 77888888899887
Q ss_pred HHHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEEEEcCCC
Q 045431 142 LQIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDIIFFCSPN 215 (433)
Q Consensus 142 l~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~l~~p~ 215 (433)
+..+ +++||+|++++|+|+++...+...| .+++.++.++++ +..+ +++ .+++++|+ |+
T Consensus 88 l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~-~~~d~~~l~~~~~~~~~~v~---~~ 151 (391)
T 3dr4_A 88 LVAMGIGPGDEVIVPSLTYIASANSVTYCG------------ATPVLVDNDPRT-FNLDAAKLEALITPRTKAIM---PV 151 (391)
T ss_dssp HHHHTCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTTT-CSBCGGGSGGGCCTTEEEEC---CB
T ss_pred HHHcCCCCcCEEEECCCchHHHHHHHHHCC------------CEEEEEecCccc-cCcCHHHHHHhcCCCceEEE---EE
Confidence 6777 8999999999999999999999888 478888886432 2222 222 24677666 57
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeecc
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIP 292 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~ 292 (433)
||||...+ +++|.++|++||+++|+|++|+... +.+. +...+ .+ +.+.||| |.++ |.+.|+++++
T Consensus 152 n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~--~~~~~---~d--i~~~S~s~~K~l~--~g~gg~~~~~ 219 (391)
T 3dr4_A 152 HLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGK--KSGSL---GD--CATFSFFGNAIIT--TGEGGMITTN 219 (391)
T ss_dssp CGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECBTTSSSC--CBSCEEEEES
T ss_pred CCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCe--eeccc---CC--EEEEECCCCCcCC--cCCeEEEEEC
Confidence 89999877 7889999999999999999998532 2221 11111 23 6677766 7764 4678999887
Q ss_pred ccccccCCcchhHHHHHHHhhcc--------------CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh
Q 045431 293 KELLFSDGFPVAKDFNRIVCTCF--------------NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS 358 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (433)
+..+ .+.+........ ...+.+..+ ..... ...+++..++.+++.+.+.+.|++
T Consensus 220 ~~~~-------~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa--~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 287 (391)
T 3dr4_A 220 DDDL-------AAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAA--IGLAQ---LERVDEHLAARERVVGWYEQKLAR 287 (391)
T ss_dssp CHHH-------HHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHH--HHHHH---HHTHHHHHHHHHHHHHHHHHHHGG
T ss_pred CHHH-------HHHHHHHHhcCCCCCCcccccccccccCCCHHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6643 244443332111 122233322 22222 123466777788888899999988
Q ss_pred cCCeeecC------CCc-cEEEEECCC---CChHHHHHHHHHcCCeEecCCCCC---CCC---------------CCCeE
Q 045431 359 LGFKVYGG------KNA-PYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGF---GPG---------------GEGFI 410 (433)
Q Consensus 359 ~g~~~~~~------~~g-~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f---~~~---------------~~~~i 410 (433)
.|+.+..+ ..+ ..+++.++. .+..++...|.++ ||.+.+|... .+. ....+
T Consensus 288 ~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 366 (391)
T 3dr4_A 288 LGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGL 366 (391)
T ss_dssp GTTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEE
T ss_pred CCccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeE
Confidence 87776544 122 235777763 4566677776554 9999987511 100 13568
Q ss_pred EEee--ccChhHHHHHHHHHHHhhC
Q 045431 411 RVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 411 Ri~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
||++ ..+++|++++++.|+++++
T Consensus 367 rl~~~~~~t~edi~~~~~~l~~~l~ 391 (391)
T 3dr4_A 367 NLPTHAGLTEADIDRVIAALDQVLV 391 (391)
T ss_dssp EECCCTTCCHHHHHHHHHHHHTTCC
T ss_pred EccCCCCCCHHHHHHHHHHHHHHhC
Confidence 9996 4589999999999998864
No 181
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.94 E-value=6.9e-26 Score=222.06 Aligned_cols=331 Identities=13% Similarity=0.113 Sum_probs=210.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCC---CCCCHHHH--HHHH-HHHhccCCCCCCcEEEcCChHH
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGA---EQGEKPLR--AAIA-STFYKDLGIEEGDIFVSDGAKC 137 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~---~~g~~~lr--~~la-~~l~~~~~~~~~~i~~~~G~~~ 137 (433)
+.|+|..+++ +.++.+.+++.+.+.+.. ...|+. ..|...++ ++++ +++.+.++++...++ ++|+++
T Consensus 46 ~~i~l~~~~~--~~~~~v~~a~~~~~~~~~----~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~-~~sGs~ 118 (447)
T 3h7f_A 46 DTLEMIASEN--FVPRAVLQAQGSVLTNKY----AEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQ-PHSGAQ 118 (447)
T ss_dssp HSEECCTTCC--CCCHHHHHHHTSGGGGCC----CCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECC-CSSHHH
T ss_pred CceeEecCCC--CCCHHHHHHHHHHhcCCc----cccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEE-eCCHHH
Confidence 4688866554 358999999988775211 112211 13555544 4455 555543466543333 555667
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCChhhh-hh--HHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCcc
Q 045431 138 DISR-LQIVFGSNVTMAVQDPSYPAYV-DS--SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTD 207 (433)
Q Consensus 138 al~~-l~~l~~~gd~Vl~~~p~~~~~~-~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 207 (433)
++.. +..++++||+|++++|+|.++. .. ....|.. ..++.++.+.++ +..+++. ..+++
T Consensus 119 a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~ 187 (447)
T 3h7f_A 119 ANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKL----------YENGFYGVDPAT-HLIDMDAVRATALEFRPK 187 (447)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHS----------SEEEEECCCTTT-CSCCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCe----------eEEEEcCcCccc-CCcCHHHHHHHHHhcCCe
Confidence 7775 6788999999999999998732 11 1122210 245556655332 2233322 13678
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecccccccccccce
Q 045431 208 IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL 286 (433)
Q Consensus 208 ~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~ 286 (433)
+|++++|+||++. ++++|.++|++||+++|+||+|.. +.+.+...... +. ..+++.|+||++ +|+|.
T Consensus 188 ~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~~---~di~~~s~sK~l--~G~~g 255 (447)
T 3h7f_A 188 VIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--PH---ADVVSTTVHKTL--GGGRS 255 (447)
T ss_dssp EEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--TT---CSEEEEESSGGG--CCCSC
T ss_pred EEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--CC---CcEEEecCCcCC--CCCCe
Confidence 8888899999986 489999999999999999999753 44443322211 11 237899999987 58899
Q ss_pred eeeeccccccccCCcchhHHHHHHHhhccCC-CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-----C
Q 045431 287 GWTVIPKELLFSDGFPVAKDFNRIVCTCFNG-ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-----G 360 (433)
Q Consensus 287 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----g 360 (433)
||++++++++ +.+.........+ ++...+.++..++......++++..+++.++++.+.+.|++. |
T Consensus 256 G~i~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g 327 (447)
T 3h7f_A 256 GLIVGKQQYA--------KAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG 327 (447)
T ss_dssp EEEEECGGGH--------HHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT
T ss_pred EEEEECHHHH--------HHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 9999998774 5555443333222 333334444444432222356888899999999999999988 8
Q ss_pred Ceeec-CCCccEEEEECCCC-ChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEeec------cChhHHHHHHHHH
Q 045431 361 FKVYG-GKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSAF------GHRGNVLEACKRF 428 (433)
Q Consensus 361 ~~~~~-~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~~------~~~~~l~~~l~~l 428 (433)
+.+.. +..++++|+++.+. ...+.+..+++++||.+. |+..+.+..++++||+.. .++++++++++.|
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l 407 (447)
T 3h7f_A 328 VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADII 407 (447)
T ss_dssp CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHH
T ss_pred eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHH
Confidence 88764 34678899998632 244556666777799998 664344445678999852 4689999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
.+++
T Consensus 408 ~~~l 411 (447)
T 3h7f_A 408 ATAL 411 (447)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 182
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.94 E-value=1.6e-26 Score=226.66 Aligned_cols=342 Identities=7% Similarity=0.012 Sum_probs=215.9
Q ss_pred CCCCceEEecCCCC--CCC-ChHHHH-H-HHHH---HHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCC-CCCCcEE
Q 045431 60 YPDAEVISLGIGDT--TEP-IPEVIT-S-ALAK---RSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLG-IEEGDIF 130 (433)
Q Consensus 60 ~~~~~~i~l~~g~~--~~~-~~~~~~-~-a~~~---~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~-~~~~~i~ 130 (433)
.++...+||..+.. ++. .++.+. + ++.+ ++.+.. .....| ......++++.+++++ + .++++|+
T Consensus 51 ~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~--~~~~~~-~~~~~~~la~~la~~~----~~~~~~~v~ 123 (449)
T 2cjg_A 51 ITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK--PSNSDV-YSVAMARFVETFARVL----GDPALPHLF 123 (449)
T ss_dssp TTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC--CCTTTC-CCHHHHHHHHHHHHHH----CCTTCCEEE
T ss_pred CCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC--CCCccc-CCHHHHHHHHHHHHhc----CCCCCCEEE
Confidence 34566889866543 333 478999 8 9999 665421 000123 2223455666666655 4 5678999
Q ss_pred EcCChHHHHHH-HHHh---cC-----------CCCEEEEeCCCChhhhhhHHHhCCc-ccc-cccccccceEEEeecCc-
Q 045431 131 VSDGAKCDISR-LQIV---FG-----------SNVTMAVQDPSYPAYVDSSVIMGQT-GEF-QKDAEKYGKIEYMRCTA- 192 (433)
Q Consensus 131 ~~~G~~~al~~-l~~l---~~-----------~gd~Vl~~~p~~~~~~~~~~~~g~~-~~~-~~~~~~~~~~~~~~~~~- 192 (433)
+++|+++++.+ +..+ .. +||+|++.+|+|+++......++.. ... ........++..++.++
T Consensus 124 ~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 203 (449)
T 2cjg_A 124 FVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRP 203 (449)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCT
T ss_pred EeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCc
Confidence 99999999987 4322 22 2899999999999876544333321 000 00000012455555543
Q ss_pred -cCC-------------cccCCCC-CCCccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Q 045431 193 -ENG-------------FFPDLST-VARTDIIFFCSP-NNPTG-AAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 193 -~~~-------------~~~~~~~-~~~~~~i~l~~p-~nPtG-~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~ 255 (433)
... +...+.. .+++++|+ ++| +|||| .+++.+++++|.++|++||+++|+||+|.++.+.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~ 282 (449)
T 2cjg_A 204 GLDEPAMAALEAEALRQARAAFETRPHDIACFV-AEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT 282 (449)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEE-ECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred hhhccccchhhHHHHHHHHHHHHhcCCceEEEE-EeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc
Confidence 111 1111111 14566655 556 78999 589999999999999999999999999998766554
Q ss_pred CCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
...+......++ +.||||.+ |+||++++++++....+. .+.......+.+.++++|.++.++++....
T Consensus 283 ~~~~~~~~~~~d----i~t~sK~l-----~iG~~~~~~~~~~~l~~~---~~~~~~~~~t~~~n~~~~~aa~aal~~~~~ 350 (449)
T 2cjg_A 283 AWAYQQLDVAPD----IVAFGKKT-----QVCGVMAGRRVDEVADNV---FAVPSRLNSTWGGNLTDMVRARRILEVIEA 350 (449)
T ss_dssp SSTHHHHTCCCS----EEEECGGG-----SSEEEEECGGGGGSTTCT---TTSTTSSCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred ceeecccCCCce----EEEecCcc-----cEEEEEECHHHhhhhhhc---ccCCcccccCCCCCHHHHHHHHHHHHHHHh
Confidence 332222222222 23789987 799999998875210000 011122334556789999988888862211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-----C-CeeecCCCccEEEEECCCC-ChHHHHHHHHHcCCeEecCCCCCCCCCCC
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSL-----G-FKVYGGKNAPYVWVQFPGR-SSWDVFSEILEKTHVVTTPGSGFGPGGEG 408 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~-----g-~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~ 408 (433)
+.+.++++++++++.+.|+++ . +....+ .|.+++++++.. ...++...+++ +||.+.|+. .+
T Consensus 351 ---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g------~~ 419 (449)
T 2cjg_A 351 ---EGLFERAVQHGKYLRARLDELAADFPAVVLDPRG-RGLMCAFSLPTTADRDELIRQLWQ-RAVIVLPAG------AD 419 (449)
T ss_dssp ---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEE-ETTEEEEECSSHHHHHHHHHHHHH-TTEECEEET------TT
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEee-ccEEEEEEECChHHHHHHHHHHHH-CCeEEecCC------CC
Confidence 345677788888888888753 2 433443 567888888742 34567777765 599999862 47
Q ss_pred eEEEe--eccChhHHHHHHHHHHHhh
Q 045431 409 FIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 409 ~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
++|++ +..+++++++++++|++++
T Consensus 420 ~iRi~~~~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 420 TVRFRPPLTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 89996 4679999999999999875
No 183
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.94 E-value=6.5e-25 Score=210.18 Aligned_cols=301 Identities=13% Similarity=0.077 Sum_probs=208.9
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh---cCCCCE
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV---FGSNVT 151 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l---~~~gd~ 151 (433)
++|+.+.+++.+.+.. . .|.+.....++++++++++ +.+ ++++|+|+++++.+ +..+ +++||+
T Consensus 10 ~~~~~v~~a~~~~~~~-----~--~~~~~~~~~~l~~~la~~~----~~~--~v~~~~ggt~al~~~~~~~~~~~~~gd~ 76 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNS-----K--QLTQGKRSLLFEEALCEFL----GVK--HALVFNSATSALLTLYRNFSEFSADRNE 76 (375)
T ss_dssp CCCHHHHHHHHHHHTS-----S--CCSSSHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHHHSSCCCTTSCE
T ss_pred CCCHHHHHHHHHHHHc-----C--cccCChHHHHHHHHHHHHh----CCC--eEEEeCCHHHHHHHHHHHhcccCCCCCE
Confidence 5788899999998753 1 1234456789999999998 554 89999999999997 5777 789999
Q ss_pred EEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCccccCCCHHHHH
Q 045431 152 MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPTGAAATREQLT 228 (433)
Q Consensus 152 Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~ 228 (433)
|++++|+|+++...+...| .+++.++.++++.++.+ +++ .+++++|++++| ||.+.+ ++
T Consensus 77 Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~ 138 (375)
T 2fnu_A 77 IITTPISFVATANMLLESG------------YTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVE---VE 138 (375)
T ss_dssp EEECSSSCTHHHHHHHHTT------------CEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HH
T ss_pred EEECCCccHhHHHHHHHCC------------CEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccC---HH
Confidence 9999999999999888888 47888888654322222 222 256888887766 999988 78
Q ss_pred HHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeecc--ccccccCCcchh
Q 045431 229 RLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIP--KELLFSDGFPVA 304 (433)
Q Consensus 229 ~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~--~~~~~~~~~~~~ 304 (433)
+|.++|++||+++|+|++|+.+.... .. .+.... .+++.||| |+++ +| +|++++. ++++
T Consensus 139 ~i~~l~~~~~~~li~D~a~~~~~~~~-~~---~~~~~~--~i~~~s~s~~K~~~-~g--~g~~~~~~~~~~~-------- 201 (375)
T 2fnu_A 139 SVQKLCKKHSLSFLSDSSHALGSEYQ-NK---KVGGFA--LASVFSFHAIKPIT-TA--EGGAVVTNDSELH-------- 201 (375)
T ss_dssp HHHHHHHHHTCEEEEECTTCTTCEET-TE---ETTSSS--SEEEEECCTTSSSC-CS--SCEEEEESCHHHH--------
T ss_pred HHHHHHHHcCCEEEEECccccCCeEC-Ce---eccccC--CeEEEeCCCCCCcc-cc--CceEEEeCCHHHH--------
Confidence 99999999999999999998643221 11 122112 37788888 9997 46 7888874 3342
Q ss_pred HHHHHHHhhcc----------------CCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCC
Q 045431 305 KDFNRIVCTCF----------------NGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGK 367 (433)
Q Consensus 305 ~~~~~~~~~~~----------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~ 367 (433)
+.+........ ...+.+...++...+ .++++..++.+++++++.+.|+++ |+.+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 276 (375)
T 2fnu_A 202 EKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL-----KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPL 276 (375)
T ss_dssp HHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGG
T ss_pred HHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCC
Confidence 44443321111 123333333222221 345778888999999999999987 77776541
Q ss_pred -----CccEEEEECCC--C-ChHHHHHHHHHcCCeEecCCCCCCCC---------------------CCCeEEEeec--c
Q 045431 368 -----NAPYVWVQFPG--R-SSWDVFSEILEKTHVVTTPGSGFGPG---------------------GEGFIRVSAF--G 416 (433)
Q Consensus 368 -----~g~~~~~~~~~--~-~~~~~~~~l~~~~gi~v~~g~~f~~~---------------------~~~~iRi~~~--~ 416 (433)
.++++|+.++. . +..++...|. ++||.+..+ |.+. ..+++||++. .
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gi~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~ 353 (375)
T 2fnu_A 277 LKDKSSNHLYPILMHQKFFTCKKLILESLH-KRGILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANL 353 (375)
T ss_dssp CSSCCCCSCEEEEECGGGGGGHHHHHHHHH-HTTEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTC
T ss_pred CCCCcceEEEEEEeCccccchHHHHHHHHH-HCCCCcccc--ccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCC
Confidence 23456788873 2 4556666665 559999832 1110 1267999974 4
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
+++++++++++|++++
T Consensus 354 t~~~i~~~~~~l~~~~ 369 (375)
T 2fnu_A 354 NLESVQNIAHSVLKTF 369 (375)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999999998875
No 184
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=4.7e-25 Score=214.45 Aligned_cols=317 Identities=13% Similarity=0.093 Sum_probs=205.0
Q ss_pred cCCCCCCC-ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-
Q 045431 69 GIGDTTEP-IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV- 145 (433)
Q Consensus 69 ~~g~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l- 145 (433)
+.|.|+++ .|+.+.+++.+.+... ....|++..|.+++++++++.+.+.++++ ++++++|+++++.+ +..+
T Consensus 5 ~~g~p~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~ 78 (418)
T 2c81_A 5 FDHWPEWPQHSDRTRRKIEEVFQSN----RWAISGYWTGEESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALG 78 (418)
T ss_dssp ---CCCSSCCCHHHHHHHHHHHHHT----CCSTTSBCCSSCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCCHHHHHHHHHHHhcC----CccccCcccCCHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcC
Confidence 34556555 4789999999988752 23347666674444444444443322655 45556666789887 5677
Q ss_pred cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEEEEcCCCCcccc
Q 045431 146 FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDIIFFCSPNNPTGA 220 (433)
Q Consensus 146 ~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~l~~p~nPtG~ 220 (433)
+++||+|+++.|+|+++...+...| .+++.++.+++ ++..+ +++ .+++++|+++ ||||.
T Consensus 79 ~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~---~~~G~ 142 (418)
T 2c81_A 79 IGEGDEVIVPSLTWIATATAVLNVN------------ALPVFVDVEAD-TYCIDPQLIKSAITDKTKAIIPV---HLFGS 142 (418)
T ss_dssp CCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHGGGCCTTEEEECCB---CCTTC
T ss_pred CCCcCEEEECCCccHhHHHHHHHcC------------CEEEEEecCCC-CCCcCHHHHHHhhCCCCeEEEEe---CCcCC
Confidence 7999999999999999999998888 47888887642 22222 222 2467887764 58998
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEecc--cccccccccceeeeecc-cccc
Q 045431 221 AATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIP-KELL 296 (433)
Q Consensus 221 ~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~-~~~~ 296 (433)
..+ +++|.++|++||++||+|++|+.+. +++. ++..+ .+ +.+.|| ||.++. | |.||++++ ++++
T Consensus 143 ~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~---~~--~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~ 210 (418)
T 2c81_A 143 MAN---MDEINEIAQEHNLFVIEDCAQSHGSVWNNQ--RAGTI---GD--IGAFSCQQGKVLTA-G-EGGIIVTKNPRLF 210 (418)
T ss_dssp CCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECCTTSSSCS-S-SCEEEEESCHHHH
T ss_pred ccc---HHHHHHHHHHCCCEEEEECcccccCccCCE--ecccc---cc--eEEEeccCCcccCC-C-CeEEEEECCHHHH
Confidence 755 8899999999999999999999765 4432 12122 22 667788 999984 8 99999986 4553
Q ss_pred ccCCcchhHHHHHHHhhccC-----------CC--------------cHHHHHHH-HHhcCcCChhHHHHHHHHHHHHHH
Q 045431 297 FSDGFPVAKDFNRIVCTCFN-----------GA--------------SNISQAGG-LACLSPEGFKAVHEVIGFYKENTD 350 (433)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~-----------~~--------------~~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 350 (433)
+.+......... .. ....+.+. ...+ +++++..++.+++++
T Consensus 211 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l-----~~~~~~~~~~~~~~~ 277 (418)
T 2c81_A 211 --------ELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL-----QELDDKNAIREKNAM 277 (418)
T ss_dssp --------HHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH-----TTHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 444433321110 00 01112211 1112 234667777778888
Q ss_pred HHHHHHhhc-CCeee-cCCC-ccE----EEEECC-----CCChHHHHHHHHHcCCeE---ecCCCCCCC-----------
Q 045431 351 IIVETFNSL-GFKVY-GGKN-APY----VWVQFP-----GRSSWDVFSEILEKTHVV---TTPGSGFGP----------- 404 (433)
Q Consensus 351 ~l~~~l~~~-g~~~~-~~~~-g~~----~~~~~~-----~~~~~~~~~~l~~~~gi~---v~~g~~f~~----------- 404 (433)
++.+.|+++ |+.+. .+.+ +.. +.+.++ +.+..++...|.+++||. +.+|.....
T Consensus 278 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~ 357 (418)
T 2c81_A 278 FLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKN 357 (418)
T ss_dssp HHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCT
T ss_pred HHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccc
Confidence 999999887 88876 3434 232 226776 346667777766555999 887752100
Q ss_pred ---------------CC--------CCeEEEee--cc-ChhHHHHHHHHHHHhh
Q 045431 405 ---------------GG--------EGFIRVSA--FG-HRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 ---------------~~--------~~~iRi~~--~~-~~~~l~~~l~~l~~~l 432 (433)
.. .+.+||++ .. +++|++..++.|++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~ 411 (418)
T 2c81_A 358 RYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELA 411 (418)
T ss_dssp TSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHH
Confidence 00 14799996 56 8999999999998875
No 185
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.94 E-value=6.6e-26 Score=218.92 Aligned_cols=287 Identities=16% Similarity=0.151 Sum_probs=193.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHh-CCccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIM-GQTGEFQKDAE 180 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~ 180 (433)
+.....++++.+++++ +.+ +.|++++| ++++.+ +..++++||+|++++|+|+++...+... ...+
T Consensus 63 ~~~~~~~l~~~la~~~----g~~-~~i~~~sG-~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------- 129 (398)
T 1gc0_A 63 SNPTLNLLEARMASLE----GGE-AGLALASG-MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFG------- 129 (398)
T ss_dssp CCHHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGT-------
T ss_pred CChHHHHHHHHHHHHh----CCC-cEEEECCH-HHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcC-------
Confidence 4456778889999887 554 55666666 688886 6777899999999999999987766322 1112
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCccc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.++..++.++...+...+ .+++++|++++|+||||.+++ +++|.++|++||+++|+|++|+.+.... ++
T Consensus 130 --~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~---~~- 198 (398)
T 1gc0_A 130 --VKLRHVDMADLQALEAAM--TPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR---PL- 198 (398)
T ss_dssp --CEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC---GG-
T ss_pred --CEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-
Confidence 366677653211111111 257899999999999999997 8899999999999999999999654421 22
Q ss_pred ccCCCCcceEEEecccccccccccce-eeeeccccccccCCcchhHHHHHHHhh-ccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPVAKDFNRIVCT-CFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
.. +..+++.|+||.++.+|.|+ ||++++++.+ .+.+...... .....+++.+.++.+.++. +
T Consensus 199 ~~----~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~ 262 (398)
T 1gc0_A 199 EL----GADLVVHSATKYLSGHGDITAGIVVGSQALV-------DRIRLQGLKDMTGAVLSPHDAALLMRGIKT-----L 262 (398)
T ss_dssp GG----TCSEEEEETTTTTTCSSSCCCEEEEECHHHH-------HHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----H
T ss_pred hh----CceEEEECCccccCCCCCCeEEEEEEChHHH-------HHHHHHHhhccCCCCCCHHHHHHHHhccch-----H
Confidence 12 24589999999999899998 9999988764 2234443333 3344677777777776652 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCe--------------eecC---CCccEEEEECCCCChHHHHHHHHHcCCeEecC--
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GFK--------------VYGG---KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP-- 398 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~~--------------~~~~---~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~-- 398 (433)
....++..++.+.+.+.|+++ ++. +..+ ..+.++.+.+++ ..+....++.+.++.+..
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~l~~~~i~~~~~s 340 (398)
T 1gc0_A 263 NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--GIGAGRRFMNALQLFSRAVS 340 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--HHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC--CHHHHHHHHHhCCCceeccC
Confidence 455666777777788888764 221 1111 246677778764 234455666667877765
Q ss_pred -CCCCC---------------------CCCCCeEEEeecc--ChhHHHHHHHHHHHh
Q 045431 399 -GSGFG---------------------PGGEGFIRVSAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 399 -g~~f~---------------------~~~~~~iRi~~~~--~~~~l~~~l~~l~~~ 431 (433)
|+.+. ...++.+|||+.. ++++++.+.+.|+++
T Consensus 341 ~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 341 LGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp CSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 32210 0125799999743 578888888888765
No 186
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.94 E-value=1.4e-24 Score=208.94 Aligned_cols=280 Identities=14% Similarity=0.123 Sum_probs=188.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh----HHHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS----SVIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~ 178 (433)
.....+|++.+++++ +.+ +.++++++++++.+ +..++++||+|++++|+|+++... ++..|
T Consensus 58 ~~~~~~l~~~la~~~----g~~--~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g-------- 123 (389)
T 3acz_A 58 NPTVEQFEEMVCSIE----GAA--GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFG-------- 123 (389)
T ss_dssp CHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTT--------
T ss_pred ChHHHHHHHHHHHHh----CCC--eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC--------
Confidence 455678999999987 554 45555556689887 566789999999999999987665 35566
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.+++.++..+...+...+ .+++++|++++|+||||.+++ +++|.++|++||+++|+|++|+.+... .+
T Consensus 124 ----~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~-~~-- 191 (389)
T 3acz_A 124 ----IEVDLIDTSDVEKVKAAW--KPNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL-KP-- 191 (389)
T ss_dssp ----CEEEEECTTCHHHHHHTC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-CG--
T ss_pred ----CEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc-Cc--
Confidence 467777763221222122 247899999999999999998 889999999999999999999865432 12
Q ss_pred ccccCCCCcceEEEecccccccccccce-eeeeccc-cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChh
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPK-ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 336 (433)
+ .. +..+++.|+||.++.+|.|+ ||+++++ +++ +.+...........++..+.++.+.++.
T Consensus 192 ~-~~----~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~--------~~l~~~~~~~g~~~~~~~~~~~~~~l~~---- 254 (389)
T 3acz_A 192 L-EL----GADIALHSVSKYINGHGDVIGGVSSAKTAEDI--------ATIKFYRKDAGSLMAPMDAFLCARGMKT---- 254 (389)
T ss_dssp G-GT----TCSEEEEETTTTTTCSSCCCCEEEEESSHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHHTT----
T ss_pred c-cc----CCeEEEECChhhccCCCCceeEEEEECcHHHH--------HHHHHHHHhcCCCCCHHHHHHHHcCccH----
Confidence 2 11 34589999999999899998 9999998 764 5555544333344566777766666652
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-Ce--------------eec---CCCccEEEEECCCCChHHHHHHHHHcCCeEecC
Q 045431 337 AVHEVIGFYKENTDIIVETFNSLG-FK--------------VYG---GKNAPYVWVQFPGRSSWDVFSEILEKTHVVTTP 398 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~g-~~--------------~~~---~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 398 (433)
+....++..++.+.+.+.|++++ +. +.. ...|.++.+.+++ .+....++.+.|+.+.+
T Consensus 255 -l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~---~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 255 -LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS---FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---HHHHHHHHTTCSSSEEB
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC---HHHHHHHHHhCCCcEEC
Confidence 23344555566777777776642 11 110 1135677788764 34455666677888776
Q ss_pred ---C------CCCCC---------------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 399 ---G------SGFGP---------------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 399 ---g------~~f~~---------------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
| ..+.. ..++.+|+|+... +.++.++.|.+++
T Consensus 331 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al 386 (389)
T 3acz_A 331 VSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQAL 386 (389)
T ss_dssp SCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHH
T ss_pred cCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHH
Confidence 4 22211 1157999997543 5556666666554
No 187
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.94 E-value=2.4e-24 Score=208.84 Aligned_cols=312 Identities=15% Similarity=0.118 Sum_probs=201.1
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCCCCC--CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCC
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGYGAE--QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNV 150 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd 150 (433)
+++.|+.+.+++. . ...+.|+.. ....++++.+++++ +. +++++++|+++++.+ +..++++||
T Consensus 31 ~~~~~~~~~~~~~---~-----~~~~~y~~~~~~~~~~l~~~la~~~----g~--~~~~~~~~gt~a~~~al~~l~~~gd 96 (412)
T 2cb1_A 31 GFKTLEEGQERFA---T-----GEGYVYARQKDPTAKALEERLKALE----GA--LEAVVLASGQAATFAALLALLRPGD 96 (412)
T ss_dssp CCSSHHHHHHHHH---H-----CCSCSBTTTCCHHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHHTTCCTTC
T ss_pred ecCChHHHHHHhc---c-----ccCcCcCCCCChHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCCC
Confidence 3556666666553 1 122355432 45788999999987 54 489999999999997 567789999
Q ss_pred EEEEeCCCChhhhhhHHH-hCCcccccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHH
Q 045431 151 TMAVQDPSYPAYVDSSVI-MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTR 229 (433)
Q Consensus 151 ~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~ 229 (433)
+|++++|+|++....+.. +...+ .+++.++.+.+ .+...+ .+++++|++++|+||||.+++ +++
T Consensus 97 ~vi~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~-~l~~~i--~~~~~~v~~~~~~n~~G~~~~---l~~ 161 (412)
T 2cb1_A 97 EVVAAKGLFGQTIGLFGQVLSLMG---------VTVRYVDPEPE-AVREAL--SAKTRAVFVETVANPALLVPD---LEA 161 (412)
T ss_dssp EEEEETTCCHHHHHHHHHTTTTTT---------CEEEEECSSHH-HHHHHC--CTTEEEEEEESSCTTTCCCCC---HHH
T ss_pred EEEEeCCCchhHHHHHHHHHHHcC---------CEEEEECCCHH-HHHHHh--ccCCeEEEEeCCCCCCccccc---HHH
Confidence 999999999886665433 22222 36777776411 111111 257899999999999999997 889
Q ss_pred HHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccc-cCC--------
Q 045431 230 LVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLF-SDG-------- 300 (433)
Q Consensus 230 i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~-~~~-------- 300 (433)
|.++|++||+++|+|++|+.+.....+ + . .+..+++.|+||.++.+|.|+|++++.++.+. ...
T Consensus 162 i~~l~~~~~~~li~D~~~~~~~~~~~~--~-~----~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
T 2cb1_A 162 LATLAEEAGVALVVDNTFGAAGALCRP--L-A----WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL 234 (412)
T ss_dssp HHHHHHHHTCEEEEECGGGTTTTSCCG--G-G----GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC--
T ss_pred HHHHHHHcCCEEEEECCCccccccCCc--c-c----cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc
Confidence 999999999999999999865222111 1 1 23459999999999889999999887653210 000
Q ss_pred -----------cchhHHHHHHH-hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeee-cC
Q 045431 301 -----------FPVAKDFNRIV-CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVY-GG 366 (433)
Q Consensus 301 -----------~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~ 366 (433)
..+.+.++... .......++.....+...++ .++...++..++.+.+.+.|.+. ++..+ .|
T Consensus 235 ~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~-----~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p 309 (412)
T 2cb1_A 235 KGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE-----TVALRVARMSETARFLAERLQGHPKVKALRYP 309 (412)
T ss_dssp -----HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG-----GHHHHHHHHHHHHHHHHHHHHTCTTCSEEECT
T ss_pred cccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc-----hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECC
Confidence 01122232222 11111223443333333332 23455556677888899999887 77643 22
Q ss_pred ----------------CCccEEEEECCCCChHHHHHHHHHcCCeEecCCC---------CCCC---------------CC
Q 045431 367 ----------------KNAPYVWVQFPGRSSWDVFSEILEKTHVVTTPGS---------GFGP---------------GG 406 (433)
Q Consensus 367 ----------------~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~---------~f~~---------------~~ 406 (433)
..+.++.+.+ + +. +....++++.||.+ .++ .+.. ..
T Consensus 310 ~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~-~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~ 385 (412)
T 2cb1_A 310 GLPEDPAHRNARKYLASGGPILTLDL-G-DL-ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVT 385 (412)
T ss_dssp TSTTCTTHHHHHHHCSSSCSEEEEEC-S-SH-HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCC
T ss_pred CCCCCccHHHHHHhCCCCceEEEEEe-C-CH-HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCC
Confidence 2355778888 5 43 44455566679998 774 2210 01
Q ss_pred CCeEEEeec--cChhHHHHHHHHHHH
Q 045431 407 EGFIRVSAF--GHRGNVLEACKRFKH 430 (433)
Q Consensus 407 ~~~iRi~~~--~~~~~l~~~l~~l~~ 430 (433)
++.+|+|+. .++++++.+++.|++
T Consensus 386 ~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 386 PGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 579999974 467888888888864
No 188
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.94 E-value=9e-25 Score=210.27 Aligned_cols=283 Identities=14% Similarity=0.108 Sum_probs=195.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~ 178 (433)
.....+|++.+++++ +. +++++++|+++++.+ +..++++||+|++++|+|+++...+ ...|
T Consensus 65 ~~~~~~l~~~la~~~----g~--~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g-------- 130 (392)
T 3qhx_A 65 NPTRTALEAALAAVE----DA--AFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWN-------- 130 (392)
T ss_dssp CHHHHHHHHHHHHHT----TC--SEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGT--------
T ss_pred ChHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcC--------
Confidence 445678899999886 54 368888888999987 6778999999999999999877665 3344
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.++..++.++...+...+ .+++++|++++|+||||.+.+ +++|.++|++||+++|+|++|+..... .+
T Consensus 131 ----~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~-~~-- 198 (392)
T 3qhx_A 131 ----VEYTPVALADLDAVRAAI--RPTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQ-QP-- 198 (392)
T ss_dssp ----CEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-CG--
T ss_pred ----cEEEEeCCCCHHHHHHhh--CCCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccC-Ch--
Confidence 377777764221111111 258899999999999999988 889999999999999999999854221 11
Q ss_pred ccccCCCCcceEEEecccccccccc-cceeeeeccc-cccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChh
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPK-ELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFK 336 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 336 (433)
+ .. +..+++.|+||.+|.+| +|.||+++++ ++ .+.+...........++..+.++...++.
T Consensus 199 ~-~~----~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~--------~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---- 261 (392)
T 3qhx_A 199 L-SL----GADVVLHSTTKYIGGHSDVVGGALVTNDEEL--------DQSFAFLQNGAGAVPGPFDAYLTMRGLKT---- 261 (392)
T ss_dssp G-GG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHTT----
T ss_pred H-Hh----CCcEEEEcCccccCCCCCceEEEEEECcHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhhhhH----
Confidence 1 12 23488999999998666 7999999985 44 35566555555566778888777776653
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCeee-cC----------------CCccEEEEECCCC-ChHHHHHHHHHcCCeEec
Q 045431 337 AVHEVIGFYKENTDIIVETFNSL-GFKVY-GG----------------KNAPYVWVQFPGR-SSWDVFSEILEKTHVVTT 397 (433)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~----------------~~g~~~~~~~~~~-~~~~~~~~l~~~~gi~v~ 397 (433)
+....++..++.+.+.+.|+++ ++..+ .| ..|..+++.+++. ...+.+...++..++.+.
T Consensus 262 -l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s 340 (392)
T 3qhx_A 262 -LVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAES 340 (392)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSC
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCC
Confidence 3455566778888888888876 44222 11 1266889999752 222223333455578887
Q ss_pred CCCCCC----C--------------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 398 PGSGFG----P--------------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 398 ~g~~f~----~--------------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.|+.++ + ..++.||||+.. ++.++.++.|.++|
T Consensus 341 ~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al 391 (392)
T 3qhx_A 341 LGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLDDLKQAL 391 (392)
T ss_dssp CCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred CCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHh
Confidence 777643 1 235789999754 35555556665554
No 189
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.94 E-value=1.2e-25 Score=219.96 Aligned_cols=280 Identities=10% Similarity=0.047 Sum_probs=187.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK 181 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 181 (433)
+.....++++.+++ + +.+ +++++|+|+++++.+ +..++++||+|++++|+|.++...+...|.
T Consensus 55 ~~~~~~~~~~~la~-~----g~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~---------- 118 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-H----SDY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQ---------- 118 (446)
T ss_dssp CSSHHHHHHHHHCS-C----TTE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTC----------
T ss_pred cchHHHHHHHHHHh-c----CCC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCC----------
Confidence 44556677777777 6 665 789999999999997 677789999999999999999999998884
Q ss_pred cceEEEeec--Ccc----CCccc-CCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccC
Q 045431 182 YGKIEYMRC--TAE----NGFFP-DLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL-YISD 253 (433)
Q Consensus 182 ~~~~~~~~~--~~~----~~~~~-~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~-~~~~ 253 (433)
.++.++. +++ ..... .+ ..++++++++++ +|+||.+++ +++|+++|++||+++|+||+|+. +.+.
T Consensus 119 --~~~~v~~~~~~~~~~~~~~d~~~l-~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 119 --EGHFIETHQSPLTNHYNKVNLSRL-NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp --CEEECEEEECTTTSSEEEEEC--------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred --eEEEEeCeeccccCcCCCCCHHHH-cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 5666665 322 11111 12 335789999988 566999998 78999999999999999999986 3344
Q ss_pred CCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHH-hhccCCCcHHHHHHH---HHh
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIV-CTCFNGASNISQAGG---LAC 329 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~---~~~ 329 (433)
+.+.+..... . .+++.|+||+++ ++.++||++++++++. ...+.... ......++....+++ ...
T Consensus 192 ~~~~~~~~~g--~--Di~~~S~~K~l~-~~~g~g~l~~~~~~i~------~~~~~~~~~~~~~~s~~~~~~aal~~a~~~ 260 (446)
T 2x3l_A 192 GFPDSTLNYQ--A--DYVVQSFHKTLP-ALTMGSVLYIHKNAPY------RENIIEYLSYFQTSSPSYLIMASLESAAQF 260 (446)
T ss_dssp TSCCCGGGGT--C--SEEEECHHHHSS-SCTTCEEEEEETTCTT------HHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred CCCCChHHcC--C--CEEEECCccccc-cccccEEEEEcCCcCC------HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 3233333332 2 288999999764 5556899999888751 12222211 112222333332222 222
Q ss_pred cCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECCCCChHHHHHHHHHcCCeEec-CCCCCCCCCCC
Q 045431 330 LSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFPGRSSWDVFSEILEKTHVVTT-PGSGFGPGGEG 408 (433)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~-~g~~f~~~~~~ 408 (433)
+...+. +++.++.++..+.+.+. |+.+..+..+.++|+.+++.+..++...|.++ ||.+. +| .+
T Consensus 261 l~~~g~---~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~-GI~v~~~g-------~~ 325 (446)
T 2x3l_A 261 YKTYDS---TLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNA-HIYLELAD-------DY 325 (446)
T ss_dssp HHHCCC---HHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTTSCHHHHHHHHHHT-TEEESEEC-------SS
T ss_pred HHHhCH---HHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCCcCHHHHHHHHHHC-CCEEEecC-------CC
Confidence 322221 22344444444444444 78877665567899999866677777777666 99997 43 36
Q ss_pred eEEEeec--cChhHHHHHHHHHHHhh
Q 045431 409 FIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 409 ~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
++|+++. .+++++ +++++|++++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~~ 350 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKIE 350 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHHH
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHHH
Confidence 7999974 488889 9999998875
No 190
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=5.1e-25 Score=210.90 Aligned_cols=312 Identities=12% Similarity=0.099 Sum_probs=208.8
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
++++++.+.|+. ++ +.+++.+.+.. ..|.+..+..+|++++++++ +.+ ++++++|+++++.+ +
T Consensus 7 ~~~~l~~~~~~~--~~-~~~~~~~~~~~-------~~~~~~~~~~~l~~~la~~~----~~~--~~~~~~~gt~a~~~~~ 70 (374)
T 3uwc_A 7 PYSYLERQFADI--EP-YLNDLREFIKT-------ADFTLGAELEKFEKRFAALH----NAP--HAIGVGTGTDALAMSF 70 (374)
T ss_dssp CSCCHHHHTSSC--HH-HHHHHHHHHHH-------TCCSSCHHHHHHHHHHHHHT----TCS--EEEEESCHHHHHHHHH
T ss_pred eeeccccCCCCc--hH-HHHHHHHHHHc-------CCcccChhHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHHHH
Confidence 467888887653 44 88888887754 14667788999999999997 443 78888888999987 5
Q ss_pred HHh-cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcCCCCcc
Q 045431 143 QIV-FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCSPNNPT 218 (433)
Q Consensus 143 ~~l-~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~p~nPt 218 (433)
..+ +++||+|++++|+|+++...++..| .+++.++.+.+..++.+ +++ .+++++|+ |+|||
T Consensus 71 ~~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~ 135 (374)
T 3uwc_A 71 KMLNIGAGDEVITCANTFIASVGAIVQAG------------ATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYT 135 (374)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGG
T ss_pred HHcCCCCCCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCc
Confidence 777 8999999999999999999998888 47888887633222222 222 24667655 89999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeeccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIPKEL 295 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~~~~ 295 (433)
|.+.+ +++|.++|++||+++|+|++|+.+. +.+. +...+ . .+++.|+| |.++.+|. .|+++++++.
T Consensus 136 G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~--~~~~~---~--d~~~~s~~~~K~l~~~g~-~g~~~~~~~~ 204 (374)
T 3uwc_A 136 GNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDK--FVGSW---G--QFACFSLHPLKNLNVWSD-AGVIITHSDE 204 (374)
T ss_dssp GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---S--SEEEEECSSSSSSCCSSC-CEEEEESCHH
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCe--ecccc---c--cEEEEeCCCCCcCCccce-eEEEEeCCHH
Confidence 99887 8889999999999999999998643 2211 11111 2 36777866 99974365 8888877654
Q ss_pred cccCCcchhHHHHHHHhh------------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC--C
Q 045431 296 LFSDGFPVAKDFNRIVCT------------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG--F 361 (433)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~ 361 (433)
+ .+.+...... .....+.+...+....+ +.+++..++.+++.+.+.+.|++.+ +
T Consensus 205 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 272 (374)
T 3uwc_A 205 Y-------AEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM-----NQLETITEKRRGIAHLYDQSFVDLSEFI 272 (374)
T ss_dssp H-------HHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTGGGTTTE
T ss_pred H-------HHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCeE
Confidence 3 2444433211 01112333333222222 2346677778888889999998874 6
Q ss_pred eeecC-CCccE----EEEECCCCChHHHHHHHHHcCCeEecCCCCCC----C----------C-------CCCeEEEee-
Q 045431 362 KVYGG-KNAPY----VWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG----P----------G-------GEGFIRVSA- 414 (433)
Q Consensus 362 ~~~~~-~~g~~----~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~----~----------~-------~~~~iRi~~- 414 (433)
.+... ..+.. +.+.. .+..++...|.+ +||.+.++.... + . ..+.+||++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~ 349 (374)
T 3uwc_A 273 DVPVRREGVYHVFHIYVLRV--KYRDQLFQYLKD-NGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAH 349 (374)
T ss_dssp ECCCCCTTEECCCSSEEEEE--TTHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCC
T ss_pred EeccCCCCCceeeEEEEEEc--CCHHHHHHHHHH-CCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCC
Confidence 55322 22222 22332 245566666554 599999886210 0 0 016799986
Q ss_pred -ccChhHHHHHHHHHHHhh
Q 045431 415 -FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 415 -~~~~~~l~~~l~~l~~~l 432 (433)
..+++|++++++.|++++
T Consensus 350 ~~~t~edi~~~~~~l~~~l 368 (374)
T 3uwc_A 350 PYLTEEEINYIIKKVREFY 368 (374)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 458999999999999876
No 191
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=2.8e-25 Score=213.83 Aligned_cols=282 Identities=14% Similarity=0.089 Sum_probs=188.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~ 178 (433)
..+..++|+++|+++ +.+ +.|++++| ++++++ +. ++++||+|+++.|+|++....+ +..|
T Consensus 54 ~~~~~~lr~~la~~~----g~~-~~i~~~sG-t~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G-------- 118 (393)
T 1n8p_A 54 NPNRENLERAVAALE----NAQ-YGLAFSSG-SATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHG-------- 118 (393)
T ss_dssp CHHHHHHHHHHHHHT----TCS-EEEEESCH-HHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTC--------
T ss_pred ChhHHHHHHHHHHHh----CCC-cEEEECCh-HHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcC--------
Confidence 446789999999997 554 45555555 899987 56 8899999999999998655433 3334
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc----CCEEEEeccccccccCC
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDN----GSIIVYDSAYALYISDD 254 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~----~~~li~De~~~~~~~~~ 254 (433)
.+++.++.++ ..+...+ .+++++|++++|+||||.+++ +++|.++|++| |+++|+|++|+.+...
T Consensus 119 ----~~v~~v~~~d-~~l~~~i--~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~- 187 (393)
T 1n8p_A 119 ----VETSFTNDLL-NDLPQLI--KENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS- 187 (393)
T ss_dssp ----SCCEEESSHH-HHHHHHS--CSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-
T ss_pred ----cEEEEeCCCh-HHHHHhc--ccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-
Confidence 3677777642 2221112 257899999999999999998 88999999999 9999999999976543
Q ss_pred CCCcccccCCCCcceEEEecccccccccccce-eeeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc
Q 045431 255 NPRSIFEIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP 332 (433)
Q Consensus 255 ~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 332 (433)
.+ ..+ +.++++.|+||.+|.+|+|+ ||++++ ++++ +.+...........++..+.++...++.
T Consensus 188 ~~---~~~----~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~--------~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 252 (393)
T 1n8p_A 188 NP---LNF----GADIVVHSATKYINGHSDVVLGVLATNNKPLY--------ERLQFLQNAIGAIPSPFDAWLTHRGLKT 252 (393)
T ss_dssp CG---GGG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred CH---HHc----CCeEEEEECcccccCCCCceeEEEEeCCHHHH--------HHHHHHHHhcCCCCCHHHHHHHHhccch
Confidence 22 222 24599999999999889999 999985 5553 5555444333333456666555555542
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcC--Ce-eecC---------------C--C-ccEEEEECCCC--ChHHHHHHHH
Q 045431 333 EGFKAVHEVIGFYKENTDIIVETFNSLG--FK-VYGG---------------K--N-APYVWVQFPGR--SSWDVFSEIL 389 (433)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~~-~~~~---------------~--~-g~~~~~~~~~~--~~~~~~~~l~ 389 (433)
+....++..++.+.+.+.|++.. +. +..| . . +..+++.+++. ....++.. +
T Consensus 253 -----~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~-l 326 (393)
T 1n8p_A 253 -----LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASS-T 326 (393)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHH-C
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhh-C
Confidence 34555666777778888887763 32 2111 1 2 67889999752 22223332 3
Q ss_pred HcCCeEecCCCCCC---------------------CCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 390 EKTHVVTTPGSGFG---------------------PGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 390 ~~~gi~v~~g~~f~---------------------~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
+..++.+..|+.+. ...++.||||++. ++++++.+.++|+++.
T Consensus 327 ~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 327 RLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp SSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred CcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 33355554443211 0125789999754 5777888888887653
No 192
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.94 E-value=2.5e-25 Score=214.84 Aligned_cols=287 Identities=15% Similarity=0.127 Sum_probs=186.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccc
Q 045431 99 SGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGE 174 (433)
Q Consensus 99 ~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~ 174 (433)
..| +..+..+|++++++++ +.+ ++|++++|+ +++.++..++++||+|++++|+|++....+ +..|
T Consensus 62 ~r~-~~p~~~~l~~~la~~~----g~~-~~i~~~sG~-~ai~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G---- 130 (403)
T 3cog_A 62 SRS-GNPTRNCLEKAVAALD----GAK-YCLAFASGL-AATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG---- 130 (403)
T ss_dssp -----CHHHHHHHHHHHHHH----TCS-EEEEESCHH-HHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGT----
T ss_pred cCC-CCchHHHHHHHHHHHh----CCC-cEEEECCHH-HHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHHcC----
Confidence 345 3456789999999998 554 778888885 788874338899999999999999865543 3445
Q ss_pred ccccccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC-CEEEEeccccccccC
Q 045431 175 FQKDAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNG-SIIVYDSAYALYISD 253 (433)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~-~~li~De~~~~~~~~ 253 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+++ +++|+++|+++| +++|+|++|+.+.+.
T Consensus 131 --------~~v~~v~~~d~~~l~~~i--~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~ 197 (403)
T 3cog_A 131 --------LKISFVDCSKIKLLEAAI--TPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ 197 (403)
T ss_dssp --------CEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC
T ss_pred --------CEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC
Confidence 377777764211111111 257899999999999999998 889999999999 999999999976442
Q ss_pred CCCCcccccCCCCcceEEEecccccccccc-cceeeeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcC
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLS 331 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 331 (433)
. + +. + +.++++.|+||.++.+| .|+||++++ ++++ +.+...........+++.+.++.+.++
T Consensus 198 ~-~--~~-~----~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~--------~~l~~~~~~~g~~~~~~~~~~~~~~l~ 261 (403)
T 3cog_A 198 R-P--LA-L----GADISMYSATKYMNGHSDVVMGLVSVNCESLH--------NRLRFLQNSLGAVPSPIDCYLCNRGLK 261 (403)
T ss_dssp C-T--TT-T----TCSEEEEETTTTTTCSSCCCCEEEEECCHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred C-c--cc-c----CCeEEEEcChhhccCCCCCeEEEEEECcHHHH--------HHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence 1 2 21 1 34699999999998666 479999986 4553 556555544445567888887777776
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHhhc---------------CCeeecCC---CccEEEEECCCCChHHHHHHHHHcCC
Q 045431 332 PEGFKAVHEVIGFYKENTDIIVETFNSL---------------GFKVYGGK---NAPYVWVQFPGRSSWDVFSEILEKTH 393 (433)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------------g~~~~~~~---~g~~~~~~~~~~~~~~~~~~l~~~~g 393 (433)
. +....++..++...+.+.|+++ ++.+..+. .|.++.+.+++. . +....++++.|
T Consensus 262 ~-----l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-~-~~~~~~l~~~~ 334 (403)
T 3cog_A 262 T-----LHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-L-QHAEIFLKNLK 334 (403)
T ss_dssp T-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-H-HHHHHHHHHCS
T ss_pred H-----HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-H-HHHHHHHHhCC
Confidence 3 2333444455555555655543 22222211 244555567642 2 34455566667
Q ss_pred eEecC---C----------CCCC-----------CCCCCeEEEeecc--ChhHHHHHHHHHHHhh
Q 045431 394 VVTTP---G----------SGFG-----------PGGEGFIRVSAFG--HRGNVLEACKRFKHLY 432 (433)
Q Consensus 394 i~v~~---g----------~~f~-----------~~~~~~iRi~~~~--~~~~l~~~l~~l~~~l 432 (433)
|.+.. | ..+. ...++++|||+.. ++++++.+.+.|++++
T Consensus 335 i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 335 LFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp SSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred cceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 75432 2 1111 1126799999754 4666777777776654
No 193
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.93 E-value=6.6e-25 Score=213.28 Aligned_cols=280 Identities=13% Similarity=0.124 Sum_probs=189.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKDAE 180 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~ 180 (433)
...++++.+++++ +.+ +.|++++|+ +++.+ +..++++||+|++++|+|++....+ ...|
T Consensus 115 ~~~~l~~~lA~l~----g~~-~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G---------- 178 (445)
T 1qgn_A 115 TTVVLEEKISALE----GAE-STLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMG---------- 178 (445)
T ss_dssp HHHHHHHHHHHHH----TCS-EEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGT----------
T ss_pred HHHHHHHHHHHHh----CCC-cEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC----------
Confidence 4458999999987 654 677777777 88886 6778999999999999999877643 3345
Q ss_pred ccceEEEeecCccCCcccCCCCCCCc-cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcc
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVART-DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSI 259 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~ 259 (433)
.+++.++.++...+...+ .+++ ++|++++|+||||.+.+ +++|.++|++||+++|+|++|+..... .++
T Consensus 179 --~~v~~v~~~d~~~l~~ai--~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~---~~~ 248 (445)
T 1qgn_A 179 --ITATVIDPADVGALELAL--NQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ---KAL 248 (445)
T ss_dssp --CEEEEECSSCHHHHHHHH--HHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC---CTT
T ss_pred --CEEEEeCCCCHHHHHHHh--ccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC---Ccc
Confidence 367777764211111111 2467 99999999999999998 789999999999999999999854321 111
Q ss_pred cccCCCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHH
Q 045431 260 FEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 260 ~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
.+ +..+++.|+||.+|..| +++||++++++++ +.+...........+++...++.+.++ .+
T Consensus 249 -~~----g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~--------~~l~~~~~~~g~~~~~~~a~~~~~~l~-----~l 310 (445)
T 1qgn_A 249 -AL----GADLVLHSATKFLGGHNDVLAGCISGPLKLV--------SEIRNLHHILGGALNPNAAYLIIRGMK-----TL 310 (445)
T ss_dssp -TT----TCSEEEECTTTTTTCSSSCCCEEEEECHHHH--------HHHHHHHHHHCCCCCHHHHHHHHHHGG-----GH
T ss_pred -cc----CCEEEEECCcccccccccceEEEEEECHHHH--------HHHHHHHHHhCCCCCHHHHHHHHHhHH-----HH
Confidence 11 23488999999998444 3799999988774 555544433333345555444444443 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CC-eeecC----------------CCccEEEEECCCC-C-hHHHHHHHHHcCCeEecC
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GF-KVYGG----------------KNAPYVWVQFPGR-S-SWDVFSEILEKTHVVTTP 398 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~-~~~~~----------------~~g~~~~~~~~~~-~-~~~~~~~l~~~~gi~v~~ 398 (433)
....++..++++.+.+.|+++ ++ .+..| ..|.++++.+++. . ...++.. ++..++.+..
T Consensus 311 ~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~-l~~~~i~~s~ 389 (445)
T 1qgn_A 311 HLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDA-LKIPYIAPSF 389 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHH-CSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHh-CCCceEeccC
Confidence 555566677788899999887 45 33333 1467888998752 1 2233333 3334787777
Q ss_pred CCCCCC---------------------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 399 GSGFGP---------------------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 399 g~~f~~---------------------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
|..+.. ..++.||||+. .|+++.+++.|++++
T Consensus 390 G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al 442 (445)
T 1qgn_A 390 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQAL 442 (445)
T ss_dssp CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHH
T ss_pred CCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHH
Confidence 776531 12579999987 567888888888765
No 194
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.93 E-value=7.2e-26 Score=223.46 Aligned_cols=331 Identities=14% Similarity=0.118 Sum_probs=201.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-H
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-L 142 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l 142 (433)
..||+..+.+ . +.+.+++.+++. .+...|++..+..+|++++++++ +. +++++|+|+++++.+ +
T Consensus 42 ~ylD~~~~~~---~-~~v~~a~~~~l~-----~~~~~y~~~~~~~~l~~~la~~~----~~--~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 42 VFIDLLTDSG---T-GAVTQSMQAAMM-----RGDEAYSGSRSYYALAESVKNIF----GY--QYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp CSEECSCCSS---C-SCCCHHHHHHTT-----SCCCCSSSCHHHHHHHHHHHHHH----CC--SEEEEEC--CCSHHHHH
T ss_pred eeEecccCCC---c-HHHHHHHHHHhc-----cCcceeccCchhHHHHHHHHHHh----Cc--CcEEEcCCcHHHHHHHH
Confidence 3566654432 2 667777777764 22346877788899999999998 43 689999999999886 5
Q ss_pred HHhcCC-----C----CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc--cCCcccCC---CC--C---
Q 045431 143 QIVFGS-----N----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA--ENGFFPDL---ST--V--- 203 (433)
Q Consensus 143 ~~l~~~-----g----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~--~--- 203 (433)
..++++ | |+|++..+.|..+.......|...+. +. ....++.+. ......++ ++ .
T Consensus 107 ~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~ 180 (467)
T 2oqx_A 107 PVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRN---VY---IKEAFDTGVRYDFKGNFDLEGLERGIEEVG 180 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEE---CB---CTTTTCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred HHHhccccccCCCCccceEEecccccccchhhhhccCcceee---cc---ccccccCCCCCCccCCcCHHHHHHHHHhcC
Confidence 666777 8 99887744444444444444431110 00 000011110 01111222 21 1
Q ss_pred -CCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCCEEEEeccccc----------cccCCCCCcccccC----CCCc
Q 045431 204 -ARTDIIFFCSPNNPT-GAAATREQLTRLVQFAKDNGSIIVYDSAYAL----------YISDDNPRSIFEIP----GAKE 267 (433)
Q Consensus 204 -~~~~~i~l~~p~nPt-G~~~~~~~~~~i~~~a~~~~~~li~De~~~~----------~~~~~~~~~~~~~~----~~~~ 267 (433)
+++++|++++||||| |.+++.+++++|.++|++||++||+|+++.. ..+.+ .+...+. ...|
T Consensus 181 ~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g--~~~~~~~~~~~~~~d 258 (467)
T 2oqx_A 181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKD--WTIEQITRETYKYAD 258 (467)
T ss_dssp GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTT--SCHHHHHHHHGGGCS
T ss_pred CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccC--ccHHHHhhhhhccCC
Confidence 368999999999998 8999999999999999999999999976543 12222 2222221 1123
Q ss_pred ceEEEeccccccccc-ccceeeeecccc-ccccCCcchhHHHHHHHhhc-----cCCCcHHHHHHHHHhcCcCChhHH-H
Q 045431 268 VAIETSSFSKYAGFT-GVRLGWTVIPKE-LLFSDGFPVAKDFNRIVCTC-----FNGASNISQAGGLACLSPEGFKAV-H 339 (433)
Q Consensus 268 ~vi~i~S~sK~~~~~-G~r~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~q~~~~~~l~~~~~~~~-~ 339 (433)
+++.|+||++|++ | ||++++++ ++.. ...+....... ....+.....+....++. ++ +
T Consensus 259 --~~~~s~sK~~g~~~G---g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~----~~~~ 324 (467)
T 2oqx_A 259 --MLAMSAKKDAMVPMG---GLLCMKDDSFFDV-----YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD----GMNL 324 (467)
T ss_dssp --EEEEESSSTTCCSSC---EEEEECSGGGHHH-----HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH----TTCH
T ss_pred --eEEEecccccCCCCc---eEEEecChhHHHH-----HHHHHHhhhccCCcccccchhhhHHHHHHHhhHh----hhhH
Confidence 4578999999866 4 78888776 4300 12222221011 111122222211111111 11 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeeecCCCccEEEEECC----CCC-----hHHHHHHHHHcCCeEecCCCCC--CC----
Q 045431 340 EVIGFYKENTDIIVETFNSLGFKVYGGKNAPYVWVQFP----GRS-----SWDVFSEILEKTHVVTTPGSGF--GP---- 404 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~----~~~-----~~~~~~~l~~~~gi~v~~g~~f--~~---- 404 (433)
...++..++++.+.+.|++.|+.+. +.+++++|++++ +.+ ...+...++.++||.+.|+..| +.
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~ 403 (467)
T 2oqx_A 325 DWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKT 403 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccc
Confidence 2344556788889999988888777 678899999883 223 2334666646669999985532 11
Q ss_pred -----CCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 405 -----GGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 405 -----~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
.+.+++||++. .+++++++++++|++++
T Consensus 404 g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l 439 (467)
T 2oqx_A 404 GKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVK 439 (467)
T ss_dssp CSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHH
T ss_pred cccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 12479999975 78999999999999875
No 195
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.93 E-value=3.1e-24 Score=210.67 Aligned_cols=326 Identities=9% Similarity=-0.034 Sum_probs=217.4
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc-----EEEcCChHHHHHH-HHHhcC--
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD-----IFVSDGAKCDISR-LQIVFG-- 147 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~-----i~~~~G~~~al~~-l~~l~~-- 147 (433)
+.++.+.+++.+++.. ...+|....+..++++++.+++.+.+++++++ +++|+|+++++.+ +..+..
T Consensus 53 ~~~~~v~e~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~ 127 (452)
T 2dgk_A 53 WDDENVHKLMDLSINK-----NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW 127 (452)
T ss_dssp CCCHHHHHHHHHTTTC-----BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc-----CCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHH
Confidence 3456788888777642 22345556688889999998888867777665 9999999999886 455443
Q ss_pred ------CC-----CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEE
Q 045431 148 ------SN-----VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFF 211 (433)
Q Consensus 148 ------~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l 211 (433)
+| ++|++++ +|..+...++.+| .+++.++.+++ ++..+++. .+++++|++
T Consensus 128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G------------~~v~~v~~~~~-~~~~d~~~l~~~i~~~t~~v~~ 193 (452)
T 2dgk_A 128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWD------------VELREIPMRPG-QLFMDPKRMIEACDENTIGVVP 193 (452)
T ss_dssp HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTT------------CEEEECCCBTT-BCSCCHHHHHHHCCTTEEEEEC
T ss_pred HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcC------------ceEEEEecCCC-CCeECHHHHHHHHhhCCEEEEE
Confidence 55 5999999 9999999999888 47888888651 23333221 357889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHc------CCEEEEecccccccc---CCCCCcccccCCCCcceEEEeccccccccc
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDN------GSIIVYDSAYALYIS---DDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++|+||||.+.+ +++|.++|++| ++++++|++|+.+.. .+........ .+-.++..|++|.+ ++
T Consensus 194 ~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~---~~~d~~~~~~hK~~-~~ 266 (452)
T 2dgk_A 194 TFGVTYTGNYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL---PRVKSISASGHKFG-LA 266 (452)
T ss_dssp BBSCTTTCBBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS---TTEEEEEEETTTTT-CC
T ss_pred EcCCcCCcccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC---CCCcEEEECccccc-CC
Confidence 999999999977 78888888885 999999999997643 2211111111 23346677889965 58
Q ss_pred ccceeeeecccc-ccccCCcchhHHHHH-H-----HhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKE-LLFSDGFPVAKDFNR-I-----VCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 283 G~r~G~l~~~~~-~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (433)
|+++||+++++. .+.+.... ...+.. . ...+......+.+.+++..+. .+.++++.+++.++++++.+.
T Consensus 267 ~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg---~~g~~~~~~~~~~~a~~l~~~ 342 (452)
T 2dgk_A 267 PLGCGWVIWRDEEALPQELVF-NVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG---REGYTKVQNASYQVAAYLADE 342 (452)
T ss_dssp CSSCEEEEESSGGGSCGGGCE-EECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCHHHHHHHhcc-CccccCCCCCCcccCCCChhHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999754 32110000 000000 0 000111114455555555542 345688888999999999999
Q ss_pred Hhhc-CCeeecC----CCccEEEEECCCC-----ChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeec--cChhHHH
Q 045431 356 FNSL-GFKVYGG----KNAPYVWVQFPGR-----SSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAF--GHRGNVL 422 (433)
Q Consensus 356 l~~~-g~~~~~~----~~g~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~l~ 422 (433)
|++. ++++..+ ....++.+++++. +..++...|.++ ||.+....... ..+.+++|+++. .++++++
T Consensus 343 L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id 421 (452)
T 2dgk_A 343 IAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAE 421 (452)
T ss_dssp HHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHT-TCBCCEEECSTTCTTCEEEEEECCTTCCHHHHH
T ss_pred HHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhc-CCeeeeeeCCcccCCeEEEEEEecCCCCHHHHH
Confidence 9998 5887654 3456777777642 336677776654 98654311111 123568999974 3689999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
.+++.|++++
T Consensus 422 ~li~~l~~~~ 431 (452)
T 2dgk_A 422 LLLEDYKASL 431 (452)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 196
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.92 E-value=5.7e-23 Score=200.85 Aligned_cols=329 Identities=16% Similarity=0.154 Sum_probs=203.2
Q ss_pred eEEecCCCCCCCChHHHHHHHH--HHHhhcccCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALA--KRSYALSTQEGYSGYGA--EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDIS 140 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~Y~~--~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~ 140 (433)
...++.|.++...|+.+.+.+. +.+.. +..|.+ ..|..++.+++.+++.+.+++++++|++++|++.++.
T Consensus 66 ~~~~~~g~~~~~~p~~v~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~e 139 (438)
T 1wyu_A 66 KAFLGGGVRSHHVPPVVQALAARGEFLTA------YTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAE 139 (438)
T ss_dssp TCCCCSSCCCCCCCHHHHHHHTSHHHHHC------CSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHH
T ss_pred ccccCCCccCCcCcHHHHHHHhcchhhhc------CCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHH
Confidence 4567788877777777644442 22221 122321 3454444444444444433778889999999995544
Q ss_pred HH-HH-hcCCCCEEEEeCCCChhhhhhHHH----hCCcccccccccccceEEEeecCccCCcccCCCC-CCCccEEEEcC
Q 045431 141 RL-QI-VFGSNVTMAVQDPSYPAYVDSSVI----MGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-VARTDIIFFCS 213 (433)
Q Consensus 141 ~l-~~-l~~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~ 213 (433)
++ .. .+++||+|++++|+|+.+...++. .| .+++.++.+ ++ ..+++. .+++++|++++
T Consensus 140 a~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G------------~~v~~v~~~-~~--~~d~~~i~~~t~~v~i~~ 204 (438)
T 1wyu_A 140 GVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVG------------AKLLTLPLE-GG--RTPLPEVGEEVGAVVVQN 204 (438)
T ss_dssp HHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTT------------CEEEEECCB-TT--BCCCCCCCTTEEEEEEES
T ss_pred HHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCC------------CEEEEEcCc-CC--ccCHHHhCCCeEEEEEEC
Confidence 32 22 357899999999999998866643 56 477777762 22 223222 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCCEEEEecc-ccccccCCCCCcccccCCCCcceEEEeccccccc----ccccceee
Q 045431 214 PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSA-YALYISDDNPRSIFEIPGAKEVAIETSSFSKYAG----FTGVRLGW 288 (433)
Q Consensus 214 p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~-~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~----~~G~r~G~ 288 (433)
| ||||.+.+ +++|.++|+++|+++|+|.. .+ +... ..+ ..+. ..++++| +|.|| +.|.++||
T Consensus 205 p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a-~g~~--~~~-~~~g----~D~~~~s-~kk~~~~~~~~Gp~~G~ 271 (438)
T 1wyu_A 205 P-NFLGALED---LGPFAEAAHGAGALFVAVADPLS-LGVL--KPP-GAYG----ADIAVGD-GQSLGLPMGFGGPHFGF 271 (438)
T ss_dssp S-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTG-GGTB--CCH-HHHT----CSEEEEE-CTTTTCCCGGGCSCCEE
T ss_pred C-CCCeEEec---HHHHHHHHHHcCCEEEEEechhh-ccCc--CCC-ccCC----CCEEEEC-CcccCCCccCCCCCeeE
Confidence 9 99999986 88999999999999996632 22 1111 111 2221 1266666 66543 56778999
Q ss_pred eeccccccccCCcch-------------------hHHHHHHHhhccCC--CcHHHHHHHHHhcCcCChhHHHHHHHHHHH
Q 045431 289 TVIPKELLFSDGFPV-------------------AKDFNRIVCTCFNG--ASNISQAGGLACLSPEGFKAVHEVIGFYKE 347 (433)
Q Consensus 289 l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 347 (433)
++++++++..-.... .+...+......+. .+.+...++..++...+.+.++++.+++++
T Consensus 272 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~ 351 (438)
T 1wyu_A 272 LATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVE 351 (438)
T ss_dssp EEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999988753210000 00111111111111 122222222222321222456888899999
Q ss_pred HHHHHHHHHhhc-CCeeecCCCccEE--EEECCCCChHHHHHHHHHcCCeEe--cCCCCCCCCCCCeEEEeec--cChhH
Q 045431 348 NTDIIVETFNSL-GFKVYGGKNAPYV--WVQFPGRSSWDVFSEILEKTHVVT--TPGSGFGPGGEGFIRVSAF--GHRGN 420 (433)
Q Consensus 348 ~~~~l~~~l~~~-g~~~~~~~~g~~~--~~~~~~~~~~~~~~~l~~~~gi~v--~~g~~f~~~~~~~iRi~~~--~~~~~ 420 (433)
+++++.+.|++. |+++..+. .++. .+.++ .+..++...|.++ ||.+ .++..|. ++++|+++. .+.++
T Consensus 352 ~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~-~~~~~~~~~L~~~-gi~v~~~~~~~~~---~~~lRis~~~~~t~ed 425 (438)
T 1wyu_A 352 MAHKLHALLLEVPGVRPFTPK-PFFNEFALALP-KDPEAVRRALAER-GFHGATPVPREYG---ENLALFAATELHEEED 425 (438)
T ss_dssp HHHHHHHHHTTSTTCEECSCS-SBCSEEEEECS-SCHHHHHHHHHHT-TCCCCEECCTTSC---SSEEEEECCTTCCHHH
T ss_pred HHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCC-CCHHHHHHHHHHC-CceeccccccccC---CCeEEEEecccCCHHH
Confidence 999999999998 99887653 3333 34443 4567777777765 9999 6776654 579999975 68999
Q ss_pred HHHHHHHHHHhhC
Q 045431 421 VLEACKRFKHLYK 433 (433)
Q Consensus 421 l~~~l~~l~~~l~ 433 (433)
+++++++|+++++
T Consensus 426 i~~~~~~l~~~l~ 438 (438)
T 1wyu_A 426 LLALREALKEVLA 438 (438)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 197
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.92 E-value=2e-23 Score=201.28 Aligned_cols=301 Identities=14% Similarity=0.105 Sum_probs=200.2
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCC--CHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEE
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQG--EKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTM 152 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g--~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~V 152 (433)
.++++.+++.+.+.. .|.+..| ..+||+++|+++ +. ++|++|+|+++++.+ +..+ +++||+|
T Consensus 10 ~~~~v~~a~~~~~~~--------~~~~~~g~~~~~l~~~la~~~----~~--~~v~~~~ggt~al~~~~~~l~~~~gd~V 75 (394)
T 1o69_A 10 MGGNELKYIEEVFKS--------NYIAPLGEFVNRFEQSVKDYS----KS--ENALALNSATAALHLALRVAGVKQDDIV 75 (394)
T ss_dssp --CCHHHHHHHHHHH--------TTTSCTTHHHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHc--------CCccCCChHHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHHHHcCCCCCCEE
Confidence 345677788877753 2545557 899999999998 44 789999999999997 5777 7999999
Q ss_pred EEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC---CccEEEEcCCCCccccCCCHHH
Q 045431 153 AVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA---RTDIIFFCSPNNPTGAAATREQ 226 (433)
Q Consensus 153 l~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~---~~~~i~l~~p~nPtG~~~~~~~ 226 (433)
++++|+|+++...+...| .+++.++.+.+..++.+ +++ .+ ++++|++++ |||...+
T Consensus 76 l~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~--- 137 (394)
T 1o69_A 76 LASSFTFIASVAPICYLK------------AKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK--- 137 (394)
T ss_dssp EEESSSCGGGTHHHHHTT------------CEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---
T ss_pred EECCCccHHHHHHHHHcC------------CEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh---
Confidence 999999999999998888 47888887632222211 211 12 688888875 8997655
Q ss_pred HHHHHHHHHHcCCEEEEecccc-ccccCCCCCcccccCCCCcceEEEecc--cccccccccceeeeecc-ccccccCCcc
Q 045431 227 LTRLVQFAKDNGSIIVYDSAYA-LYISDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIP-KELLFSDGFP 302 (433)
Q Consensus 227 ~~~i~~~a~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~-~~~~~~~~~~ 302 (433)
+++|.++|+++|+++|+|++|+ ++.+.+.. ...+ .+ +.+.|| +|.+ +|.|+||++++ ++++
T Consensus 138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~--~~~~---~~--~~~~s~s~~K~l--~~~~~G~~~~~~~~l~------ 202 (394)
T 1o69_A 138 MDEIVEICKENDIVLIEDAAEALGSFYKNKA--LGTF---GE--FGVYSYNGNKII--TTSGGGMLIGKNKEKI------ 202 (394)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETTEE--TTSS---SS--EEEEECCTTSSS--CCSSCEEEEESCHHHH------
T ss_pred HHHHHHHHHHcCCEEEEECcCcccceeCCcc--cccc---cC--cEEEEEeCCccC--CCCCceEEEECCHHHH------
Confidence 8899999999999999999999 45443321 1111 12 445556 5655 56799999996 5653
Q ss_pred hhHHHHHHHhhccCC--------------CcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC-
Q 045431 303 VAKDFNRIVCTCFNG--------------ASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK- 367 (433)
Q Consensus 303 ~~~~~~~~~~~~~~~--------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~- 367 (433)
+.+.......... .+.+...++...+ +++++..++++++++++.+.|++. +.+.++.
T Consensus 203 --~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 274 (394)
T 1o69_A 203 --EKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM-----EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELE 274 (394)
T ss_dssp --HHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCT
T ss_pred --HHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCC
Confidence 4454432211100 2223333332222 235667888899999999999887 6655432
Q ss_pred ---Ccc-EEEEECCCC----------------------ChHHHHHHHHHcCCeEecCCCCC---CCCCC-----------
Q 045431 368 ---NAP-YVWVQFPGR----------------------SSWDVFSEILEKTHVVTTPGSGF---GPGGE----------- 407 (433)
Q Consensus 368 ---~g~-~~~~~~~~~----------------------~~~~~~~~l~~~~gi~v~~g~~f---~~~~~----------- 407 (433)
.++ .+++.++.. +..++...|. ++||.+++|..+ .+.-.
T Consensus 275 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~ 353 (394)
T 1o69_A 275 NSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK-NKQIETRPLWKAMHTQEVFKGAKAYLNGNSE 353 (394)
T ss_dssp TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH-HTTCCCBCCCCCGGGCGGGTTCEEEECSHHH
T ss_pred CCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH-HcCCcccccCCccccchhhhccCCCCChHHH
Confidence 232 367777632 3445665554 569999998532 11000
Q ss_pred ----CeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 408 ----GFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 408 ----~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
..+|+.+ +.+++|++.+++.|+++++
T Consensus 354 ~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 354 LFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 2344443 4689999999999998763
No 198
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.92 E-value=4.8e-24 Score=204.51 Aligned_cols=302 Identities=10% Similarity=0.053 Sum_probs=195.9
Q ss_pred HHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEE
Q 045431 109 PLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIE 186 (433)
Q Consensus 109 ~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~ 186 (433)
++.+++++.+.+.++++ +.|++|+|++++++++..++.+||+|++.+++|++.. ...+..|.. .+++
T Consensus 35 ~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~----------~~~~ 103 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFA----------KSST 103 (379)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHHHHHHHHHHCCS----------SEEE
T ss_pred HHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHHHHHHHHHhCCC----------CceE
Confidence 44444444444433666 7899999999999986566789999999999998753 233444421 1455
Q ss_pred EeecCccC------Cc-ccCCCC------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 187 YMRCTAEN------GF-FPDLST------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 187 ~~~~~~~~------~~-~~~~~~------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
.++.+..+ .+ ..+++. ..++++|++++++||||.+++.+++++|.++|++||+++|+|++++ .
T Consensus 104 ~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g--- 179 (379)
T 3ke3_A 104 VLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G--- 179 (379)
T ss_dssp EEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T---
T ss_pred EEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C---
Confidence 55543211 00 122221 1378898888999999999999999999999999999999999976 2
Q ss_pred CCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc----CCcchh---HHHH----HHHhh---ccCCCc
Q 045431 254 DNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS----DGFPVA---KDFN----RIVCT---CFNGAS 319 (433)
Q Consensus 254 ~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~----~~~~~~---~~~~----~~~~~---~~~~~~ 319 (433)
+.+..+... +..+++.|++|+++ ++.++|+++++++++.. ....+. ..+. .+... ...+.+
T Consensus 180 ~~~~~~~~~----~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~ 254 (379)
T 3ke3_A 180 CVWLDMKEL----GIDVLISAPQKGWS-STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMP 254 (379)
T ss_dssp TCCCCHHHH----TCSEEEECTTTTTC-SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCC
T ss_pred Ccccccccc----CCCEEEecchhhcC-CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCC
Confidence 223333332 22488899999986 54568999999877421 000000 0011 11111 112456
Q ss_pred HHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCC--cc-EEEEECCCCChHHHHHHHHHcCCeEe
Q 045431 320 NISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKN--AP-YVWVQFPGRSSWDVFSEILEKTHVVT 396 (433)
Q Consensus 320 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--g~-~~~~~~~~~~~~~~~~~l~~~~gi~v 396 (433)
...+.++.++++......+++++++++++++++.+.|+++|+.+..+.. +. ...+..++ ...... ..+.++||.+
T Consensus 255 ~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~-~~L~~~Gi~v 332 (379)
T 3ke3_A 255 TDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTER-DDMHKG-SAFAEAGLQI 332 (379)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSC-HHHHSS-HHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCC-cchHHH-HHHHHCCeEE
Confidence 6666655555542111235788889999999999999999888765432 23 33334332 112223 3445669999
Q ss_pred cCCCCCC---CCCCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 397 TPGSGFG---PGGEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 397 ~~g~~f~---~~~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+|..+. +...+.+|+++ +.+++++++++++|++++
T Consensus 333 ~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l 373 (379)
T 3ke3_A 333 AAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKAL 373 (379)
T ss_dssp EECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHH
T ss_pred eCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 9998654 22367899996 458999999999998875
No 199
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.91 E-value=3.7e-23 Score=197.97 Aligned_cols=303 Identities=12% Similarity=0.047 Sum_probs=198.9
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEE
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAV 154 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~ 154 (433)
.++.+.+++.+.+.. . .|.+..+..++|+++++++ +. +++++++|+++++.+ +..+ +++||+|++
T Consensus 15 ~~~~~~~a~~~~~~~----~---~~~~~~~~~~l~~~la~~~----~~--~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~ 81 (373)
T 3frk_A 15 IEYEIKFKFEEIYKR----N---WFILGDEDKKFEQEFADYC----NV--NYCIGCGNGLDALHLILKGYDIGFGDEVIV 81 (373)
T ss_dssp HHHHHHHHHHHHHHH----T---CCSSSHHHHHHHHHHHHHH----TS--SEEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCHHHHHHHHHHHHC----C---CccCCchHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHHcCCCCcCEEEE
Confidence 356677777777653 1 3556778999999999998 54 488999999999987 6777 899999999
Q ss_pred eCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC---CCC--CCCccEEEEcCCCCccccCCCHHHHHH
Q 045431 155 QDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD---LST--VARTDIIFFCSPNNPTGAAATREQLTR 229 (433)
Q Consensus 155 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~ 229 (433)
+.|+|+++...++..| .+++.++.+++. +..+ +++ .+++++|+ |+||||...+ +++
T Consensus 82 ~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~ 142 (373)
T 3frk_A 82 PSNTFIATALAVSYTG------------AKPIFVEPDIRT-YNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDE 142 (373)
T ss_dssp ETTSCTHHHHHHHHHS------------CEEEEECEETTT-TEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHH
T ss_pred CCCCcHHHHHHHHHcC------------CEEEEEeccccc-cCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHH
Confidence 9999999999998888 477788876432 2222 222 24677766 6789999877 778
Q ss_pred HHHHHHHcCCEEEEeccccccc-cCCCCCcccccCCCCcceEEEeccc--ccccccccceeeeeccccccccCCcchhHH
Q 045431 230 LVQFAKDNGSIIVYDSAYALYI-SDDNPRSIFEIPGAKEVAIETSSFS--KYAGFTGVRLGWTVIPKELLFSDGFPVAKD 306 (433)
Q Consensus 230 i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~~vi~i~S~s--K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~ 306 (433)
|.++|++||+++|+|++|+... +++. .+..+ .| +++.||| |.++..| +.|++++++..+ .+.
T Consensus 143 i~~l~~~~~~~li~D~a~~~g~~~~~~--~~~~~---~d--~~~~S~~~~K~l~~~g-~gg~~~~~~~~~-------~~~ 207 (373)
T 3frk_A 143 IKRIAKKYNLKLIEDAAQAHGSLYKGM--KVGSL---GD--AAGFSFYPAKNLGSLG-DGGAVVTNDKDL-------AEK 207 (373)
T ss_dssp HHHHHHHHTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECCTTSSSCCSS-SCEEEEESCHHH-------HHH
T ss_pred HHHHHHHcCCEEEEECCcccCCEECCE--ecccc---cc--EEEEeCcCCCccCccc-eeEEEEeCCHHH-------HHH
Confidence 9999999999999999998532 2221 11111 22 7788877 9886225 478888876533 244
Q ss_pred HHHHHhhc------------cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-CCccEEE
Q 045431 307 FNRIVCTC------------FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG-KNAPYVW 373 (433)
Q Consensus 307 ~~~~~~~~------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~~~ 373 (433)
+....... ....+.+..++....+ +.+++..++.++..+.+.+.|++.++.+... ..+...|
T Consensus 208 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 282 (373)
T 3frk_A 208 IKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKL-----KYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVW 282 (373)
T ss_dssp HHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCC
T ss_pred HHHHHhcCcccCCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceee
Confidence 44333211 1112344433322222 2346667777788888888888776443221 1221111
Q ss_pred --EECCCCChHHHHHHHHHcCCeEecCCCCCCC------------CC---------CCeEEEee--ccChhHHHHHHHHH
Q 045431 374 --VQFPGRSSWDVFSEILEKTHVVTTPGSGFGP------------GG---------EGFIRVSA--FGHRGNVLEACKRF 428 (433)
Q Consensus 374 --~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------------~~---------~~~iRi~~--~~~~~~l~~~l~~l 428 (433)
+.+...+..++...|.+ +||.+.++..... .+ .+.+|+++ ..+++|++..++.|
T Consensus 283 ~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l 361 (373)
T 3frk_A 283 YTFVIRSEKRDELQKYLNN-NGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKI 361 (373)
T ss_dssp SSEEEEESSHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHH-CCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHH
Confidence 12222245566666655 5999987752110 00 15799996 45899999999999
Q ss_pred HHhh
Q 045431 429 KHLY 432 (433)
Q Consensus 429 ~~~l 432 (433)
+++.
T Consensus 362 ~~~~ 365 (373)
T 3frk_A 362 NAWK 365 (373)
T ss_dssp HTCC
T ss_pred HHHh
Confidence 8764
No 200
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.91 E-value=1.9e-22 Score=192.54 Aligned_cols=301 Identities=15% Similarity=0.150 Sum_probs=203.3
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHh-cCCCCEEEE
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV-FGSNVTMAV 154 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l-~~~gd~Vl~ 154 (433)
.++.+.+++.+.+.. ..|.+..+..++++++++++ +.+ ++++++|+++++.+ +..+ +++||+|++
T Consensus 14 ~~~~v~~a~~~~~~~-------~~~~~~~~~~~l~~~la~~~----~~~--~~~~~~sGt~al~~al~~~~~~~gd~Vi~ 80 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRH-------GQYILGPEVTELEDRLADFV----GAK--YCISCANGTDALQIVQMALGVGPGDEVIT 80 (367)
T ss_dssp HHHHHHHHHHHHHHH-------CCCSSCHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCHHHHHHHHHHHhc-------CCccCChHHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHHHHHHhCCCCcCEEEE
Confidence 456777777776653 13556678899999999998 543 78999999999987 5667 799999999
Q ss_pred eCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-CcccC-CCC--CCCccEEEEcCCCCccccCCCHHHHHHH
Q 045431 155 QDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-GFFPD-LST--VARTDIIFFCSPNNPTGAAATREQLTRL 230 (433)
Q Consensus 155 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~--~~~~~~i~l~~p~nPtG~~~~~~~~~~i 230 (433)
+.|+|+++...+...| .+++.++.+++. .++.+ +++ .+++++|+ |+||||...+ +++|
T Consensus 81 ~~~~~~~~~~~~~~~G------------~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~i 142 (367)
T 3nyt_A 81 PGFTYVATAETVALLG------------AKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDAI 142 (367)
T ss_dssp ESSSCTHHHHHHHHTT------------CEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred CCCccHHHHHHHHHcC------------CEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHHH
Confidence 9999999999999888 478888887542 22222 222 25677666 7889998776 8889
Q ss_pred HHHHHHcCCEEEEeccccc-cccCCCCCcccccCCCCcceEEEecc--cccccccccceeeeeccccccccCCcchhHHH
Q 045431 231 VQFAKDNGSIIVYDSAYAL-YISDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIPKELLFSDGFPVAKDF 307 (433)
Q Consensus 231 ~~~a~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~ 307 (433)
.++|++||+++|+|++|+. ..+.+. .+..+ . .+++.|| +|.++.+|. .|++++++..+ .+.+
T Consensus 143 ~~la~~~~~~li~D~a~~~g~~~~~~--~~~~~---~--di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l-------~~~~ 207 (367)
T 3nyt_A 143 NAIASKYGIPVIEDAAQSFGASYKGK--RSCNL---S--TVACTSFFPSAPLGCYGD-GGAIFTNDDEL-------ATAI 207 (367)
T ss_dssp HHHHHHTTCCBEEECTTTTTCEETTE--ETTSS---S--SEEEEECCTTSSSCCSSC-CEEEEESCHHH-------HHHH
T ss_pred HHHHHHcCCEEEEECccccCCeECCe--eccCC---C--CEEEEECCCCCcCCCcCc-eeEEEeCCHHH-------HHHH
Confidence 9999999999999999985 223321 11112 1 3778887 899984476 88988865443 2444
Q ss_pred HHHHhh------------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecC-CC---c-c
Q 045431 308 NRIVCT------------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGG-KN---A-P 370 (433)
Q Consensus 308 ~~~~~~------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~---g-~ 370 (433)
...... .....+.+.++++...++ .+++..++.++..+++.+.|++.++.+... .+ . .
T Consensus 208 ~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 282 (367)
T 3nyt_A 208 RQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE-----IFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYA 282 (367)
T ss_dssp HHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCS
T ss_pred HHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeE
Confidence 443321 123355555555554443 235666677778888888998877554322 11 1 2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCeEecCCCCCC-------C-C----------CCCeEEEeec--cChhHHHHHHHHHHH
Q 045431 371 YVWVQFPGRSSWDVFSEILEKTHVVTTPGSGFG-------P-G----------GEGFIRVSAF--GHRGNVLEACKRFKH 430 (433)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-------~-~----------~~~~iRi~~~--~~~~~l~~~l~~l~~ 430 (433)
.+++.++ +..++...|.+ +||.++++.... . . ....+||++. .+++|++..++.|++
T Consensus 283 ~~~~~~~--~~~~l~~~L~~-~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 283 QYTVRMD--NRESVQASLKA-AGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp SEEEECS--SHHHHHHHHHH-HTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred EEEEEeC--CHHHHHHHHHH-CCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 2445554 45566666554 599998765310 0 0 0246899963 489999999999875
Q ss_pred h
Q 045431 431 L 431 (433)
Q Consensus 431 ~ 431 (433)
.
T Consensus 360 ~ 360 (367)
T 3nyt_A 360 L 360 (367)
T ss_dssp -
T ss_pred H
Confidence 3
No 201
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.85 E-value=2.1e-26 Score=224.30 Aligned_cols=337 Identities=12% Similarity=0.046 Sum_probs=216.3
Q ss_pred HHHHHHhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc
Q 045431 52 RKAAHMLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD 128 (433)
Q Consensus 52 ~~~~~~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~ 128 (433)
..+......+++..|||..|... + ..+|.+.+++.+++.+. ....| +.....+|.+.|++++ + ..+.
T Consensus 89 ~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~----~~~~~-~~~~~~~Lae~L~~~~----p-~~~~ 158 (465)
T 2yky_A 89 GTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVG----LNLST-QTENEALFAEAVCDRF----P-SIDL 158 (465)
Confidence 34444445567789999888753 2 25789999999988652 12234 4445667777777765 4 5688
Q ss_pred EEEcCChHHHHHHHHHh---cCCCCEEEEeCCCChhhhhhHHHhC--CcccccccccccceEEEeecCccCCcccCCCCC
Q 045431 129 IFVSDGAKCDISRLQIV---FGSNVTMAVQDPSYPAYVDSSVIMG--QTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV 203 (433)
Q Consensus 129 i~~~~G~~~al~~l~~l---~~~gd~Vl~~~p~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (433)
+++++++++++.....+ ...+++|++.+++|++...... .| ..++ . ..+..++.++...+...+.+.
T Consensus 159 v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-sg~~~~g~------~-~~~~~~~~~d~~~l~~~l~~~ 230 (465)
T 2yky_A 159 VRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-SGHAPTNA------P-YHVVLGVYNDVEGTADLLKRH 230 (465)
Confidence 99999999999864333 2456999999999988654333 22 0011 0 022333332211111112211
Q ss_pred -CCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 204 -ARTDIIFFCSPNNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 204 -~~~~~i~l~~p~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
+++++|++...+++||.+. +.+.+++|.++|++||+++|+||+|. +.. +.......+ +....+.||||.+|
T Consensus 231 ~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~-g~~~a~~~~----gv~pDi~t~sK~lg- 303 (465)
T 2yky_A 231 GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL-SGGGAQEML----GISADLTTLGKYIG- 303 (465)
Confidence 4677766543366699655 68899999999999999999999999 632 222111111 11233558999998
Q ss_pred cccceeeeeccccccccCCcchhHHHHH-----HHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 282 TGVRLGWTVIPKELLFSDGFPVAKDFNR-----IVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 282 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
+|+|+||++++++++ +.+.. .....+.+.++++|+++.+.|+.... +.+.++++++.+++.+.|
T Consensus 304 ~G~piG~v~~~~~i~--------~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L 372 (465)
T 2yky_A 304 GGMSFGAFGGRRDLM--------ERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT---RQAASDLSASGDRFRANL 372 (465)
Confidence 699999999999886 33433 23344556789999988888863222 345566666666666666
Q ss_pred hhc----CCeeecCCCccEEEEECCC-C-------------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccCh
Q 045431 357 NSL----GFKVYGGKNAPYVWVQFPG-R-------------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHR 418 (433)
Q Consensus 357 ~~~----g~~~~~~~~g~~~~~~~~~-~-------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~ 418 (433)
++. ++....+..|.++|+.++. . ....++..+++ +||.+.|+. |. . +++..++
T Consensus 373 ~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~-~~----~---~s~~~t~ 443 (465)
T 2yky_A 373 NRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRG-MY----A---LSLEIAD 443 (465)
Confidence 554 3322233467888888763 1 12356666665 599999875 21 1 6777899
Q ss_pred hHHHHHHHHHHHhhC
Q 045431 419 GNVLEACKRFKHLYK 433 (433)
Q Consensus 419 ~~l~~~l~~l~~~l~ 433 (433)
+++++++++|+++++
T Consensus 444 edid~~l~~l~~~l~ 458 (465)
T 2yky_A 444 AGRDAFAEALADFIG 458 (465)
Confidence 999999999988753
No 202
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.91 E-value=9e-23 Score=197.03 Aligned_cols=286 Identities=11% Similarity=0.067 Sum_probs=185.1
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHH-hCCccccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVI-MGQTGEFQKDAEKY 182 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~ 182 (433)
....+|++.+|+++ +. +++++++|+++++.+ +..++++||+|+++.|.|.+....+.. +...+
T Consensus 82 p~~~~le~~lA~l~----g~--~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G--------- 146 (415)
T 2fq6_A 82 LTHFSLQQAMCELE----GG--AGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG--------- 146 (415)
T ss_dssp HHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGT---------
T ss_pred chHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC---------
Confidence 34567999999987 54 356666788899987 677889999999999999987765532 11112
Q ss_pred ceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCccc
Q 045431 183 GKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDNPRSIF 260 (433)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~~~~~~ 260 (433)
.++..++.++.+.+...+ .+++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|+..... .++
T Consensus 147 ~~v~~v~~~d~~~le~ai--~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~---~p~- 217 (415)
T 2fq6_A 147 VTTSWFDPLIGADIVKHL--QPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF---KAL- 217 (415)
T ss_dssp CEEEEECTTCGGGGGGGC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS---CGG-
T ss_pred cEEEEECCCCHHHHHHhh--ccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC---Ccc-
Confidence 367777664222221112 257899999999999999998 7899999999 99999999999854221 122
Q ss_pred ccCCCCcceEEEecccccccccccc-eeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHH
Q 045431 261 EIPGAKEVAIETSSFSKYAGFTGVR-LGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVH 339 (433)
Q Consensus 261 ~~~~~~~~vi~i~S~sK~~~~~G~r-~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 339 (433)
.+ +..+++.|+||.++.+|.+ .||++++++++ +.+...........++.....+...+ +.+.
T Consensus 218 ~~----g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~--------~~l~~~~~~~G~~~~~~~a~~~~~~l-----~~l~ 280 (415)
T 2fq6_A 218 DF----GIDVSIQAATKYLVGHSDAMIGTAVCNARCW--------EQLRENAYLMGQMVDADTAYITSRGL-----RTLG 280 (415)
T ss_dssp GG----TCSEEEEETTTTTTCSSSCCCEEEEECTTTH--------HHHHHHHHHTTCCCCHHHHHHHHHHH-----HHHH
T ss_pred cc----CCeEEEEeCccccCCCCCceEEEEEeCHHHH--------HHHHHHHHhcCCCCCHHHHHHHHhhh-----hHHH
Confidence 22 2348999999999877755 58999887764 55554433222333444333333322 3445
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCe-eecC----------------CCccEEEEECCCCChHHHHHHHHH---cCCeEecC
Q 045431 340 EVIGFYKENTDIIVETFNSL-GFK-VYGG----------------KNAPYVWVQFPGRSSWDVFSEILE---KTHVVTTP 398 (433)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~-g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~l~~---~~gi~v~~ 398 (433)
...++..++.+.+.+.|++. .+. +..| ..+..+++.+++....+....++. ..++.+..
T Consensus 281 ~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~ 360 (415)
T 2fq6_A 281 VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSW 360 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccC
Confidence 56666778888888888876 332 2111 146678899875311112223332 33455555
Q ss_pred CCCCC-------------------CCCCCeEEEeecc--ChhHHHHHHHHHHHh
Q 045431 399 GSGFG-------------------PGGEGFIRVSAFG--HRGNVLEACKRFKHL 431 (433)
Q Consensus 399 g~~f~-------------------~~~~~~iRi~~~~--~~~~l~~~l~~l~~~ 431 (433)
|+.+. ...++.||||++. ++++++.+.++|+++
T Consensus 361 G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 361 GGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp CSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred CCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 53321 0124789999754 567788888877654
No 203
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.91 E-value=3.9e-23 Score=204.96 Aligned_cols=327 Identities=11% Similarity=0.038 Sum_probs=216.7
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC--CCcEEE---cCChHHHHHH-HHHhcCC-
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFV---SDGAKCDISR-LQIVFGS- 148 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~--~~~i~~---~~G~~~al~~-l~~l~~~- 148 (433)
.+++.+.+++.+.+.. ...+|....+..++++.+.+++.+.++++ +++++. |+|+++++.+ +.++..+
T Consensus 67 ~~~~~v~~~l~~~~~~-----~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~ 141 (502)
T 3hbx_A 67 WMEPECDKLIMSSINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKW 141 (502)
T ss_dssp CCCHHHHHHHHHTTTC-----BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcc-----CCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHH
Confidence 4577788888887653 22334444567888888888888766776 666654 8999999886 5555544
Q ss_pred -------CC-----EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCccEEEE
Q 045431 149 -------NV-----TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VARTDIIFF 211 (433)
Q Consensus 149 -------gd-----~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l 211 (433)
|+ +|++++++|..+...++..| .+++.++.+++ .+..+++. .+++++|++
T Consensus 142 ~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~t~~v~~ 208 (502)
T 3hbx_A 142 QNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFE------------VELKEVKLSEG-YYVMDPQQAVDMVDENTICVAA 208 (502)
T ss_dssp HHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTT------------CEEEEECCBTT-BCSCCHHHHHHHCCTTEEEEEE
T ss_pred hHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcC------------ceeEEEecCCC-cCcCCHHHHHHHHhhCCEEEEE
Confidence 76 99999999999999999998 47888887653 23333321 357888999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHc------CCEEEEecccccccc---CCCCCcccccCCCCcceEEEeccccccccc
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDN------GSIIVYDSAYALYIS---DDNPRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++|+||||.+.+ +++|.++|+++ |+++++|++|+.+.. .+........ .+..++..|.+|.++ +
T Consensus 209 ~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~---~~~D~v~~s~hK~l~-~ 281 (502)
T 3hbx_A 209 ILGSTLNGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL---PLVKSINVSGHKYGL-V 281 (502)
T ss_dssp EBSCTTTCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS---TTEEEEEEETTTTTC-C
T ss_pred ecCCCCCCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC---CCceEEEECcccccC-C
Confidence 999999999987 77888888888 999999999986542 2211111111 233467788999884 7
Q ss_pred ccceeeeeccccc-cccCCcchhHHHH-HHH-h----hccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKEL-LFSDGFPVAKDFN-RIV-C----TCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVET 355 (433)
Q Consensus 283 G~r~G~l~~~~~~-~~~~~~~~~~~~~-~~~-~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (433)
+.++||+++.+.. +.... .+...+. ... . .+......+.+.+++..+. .+.+.++.++..++++++.+.
T Consensus 282 p~g~G~~~~~~~~~l~~~~-~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg---~~g~~~~~~~~~~~a~~l~~~ 357 (502)
T 3hbx_A 282 YAGIGWVIWRNKEDLPEEL-IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG---HEGYRNVMENCRENMIVLREG 357 (502)
T ss_dssp CSSCEEEEESSGGGSCGGG-CEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCHHHhhHHh-ccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 7889988876443 21000 0000000 000 0 0001113444554444443 234577788888999999999
Q ss_pred HhhcC-CeeecC-CCccEEEEECCC---CChHHHHHHHHHcCCeEecCCCCCC-CCCCCeEEEeec--cChhHHHHHHHH
Q 045431 356 FNSLG-FKVYGG-KNAPYVWVQFPG---RSSWDVFSEILEKTHVVTTPGSGFG-PGGEGFIRVSAF--GHRGNVLEACKR 427 (433)
Q Consensus 356 l~~~g-~~~~~~-~~g~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~--~~~~~l~~~l~~ 427 (433)
|++++ +++..+ ....++.+++++ .+..++...|. ++||.+....... ..+..++|+++. .+.++++.+++.
T Consensus 358 L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~ 436 (502)
T 3hbx_A 358 LEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLR-RYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVID 436 (502)
T ss_dssp HHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHH-TTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred HHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHH-hCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHH
Confidence 99984 888765 567788888864 23446666665 5599874322211 223568999974 479999999999
Q ss_pred HHHhh
Q 045431 428 FKHLY 432 (433)
Q Consensus 428 l~~~l 432 (433)
|++++
T Consensus 437 L~~~l 441 (502)
T 3hbx_A 437 IEKVM 441 (502)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 204
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.91 E-value=9.3e-23 Score=197.57 Aligned_cols=290 Identities=13% Similarity=0.081 Sum_probs=180.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhh----hHHHhCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVD----SSVIMGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~~~~ 178 (433)
.....+|++.+|+++ +.+ +.|+++ ++++++.+ +..++++||+|++++|+|.++.. .+...|
T Consensus 81 ~p~~~~le~~lA~l~----g~~-~~v~~~-sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G-------- 146 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLT----GAL-GVLALG-SGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFG-------- 146 (430)
T ss_dssp CHHHHHHHHHHHHHH----TCS-EEEEES-CHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTT--------
T ss_pred CHHHHHHHHHHHHHH----CCC-cEEEEC-CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC--------
Confidence 456778888888886 543 345555 55688886 67889999999999999998877 445666
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+..... .+
T Consensus 147 ----~~~~~v~~~d~~~l~~ai--~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~---~~ 214 (430)
T 3ri6_A 147 ----IEVRFVDVMDSLAVEHAC--DETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLL---EA 214 (430)
T ss_dssp ----CEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTC---CG
T ss_pred ----CEEEEeCCCCHHHHHHhh--CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC---Ch
Confidence 477777765211111111 358999999999999999998 778999999999999999999853321 11
Q ss_pred ccccCCCCcceEEEecccccccccccceeeeec-ccc--cccc-CCcc---------hhHHHHH-HHhhccCCCcHHHHH
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI-PKE--LLFS-DGFP---------VAKDFNR-IVCTCFNGASNISQA 324 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~-~~~--~~~~-~~~~---------~~~~~~~-~~~~~~~~~~~~~q~ 324 (433)
... +..+++.|+||.++.+|..+|.+++ +.. +... ..+. +...... .........++....
T Consensus 215 -~~~----g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~ 289 (430)
T 3ri6_A 215 -KRL----GVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAY 289 (430)
T ss_dssp -GGG----TCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred -HHc----CCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHH
Confidence 111 2348999999999866655555444 222 2100 0000 0111111 111122223333322
Q ss_pred HHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCe-eecCC----------------CccEEEEECCCCCh-HHHH
Q 045431 325 GGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFK-VYGGK----------------NAPYVWVQFPGRSS-WDVF 385 (433)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~----------------~g~~~~~~~~~~~~-~~~~ 385 (433)
.+.. +.+.+..+.++..+++..+.+.|+++ ++. +..|. +|+.+|+.+++... ..++
T Consensus 290 l~l~-----~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~ 364 (430)
T 3ri6_A 290 LQSL-----GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFM 364 (430)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHH
T ss_pred HHHh-----hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHH
Confidence 2222 23445666677788888999999887 555 33332 44489999983222 2333
Q ss_pred HHHHHcCCeEecCCCCCCC---------------------CCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 386 SEILEKTHVVTTPGSGFGP---------------------GGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 386 ~~l~~~~gi~v~~g~~f~~---------------------~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
.. ++..++.+.+|..++. ..++.||||+.. |+.+.+++.|+++|
T Consensus 365 ~~-l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~--E~~~dl~~dl~~al 429 (430)
T 3ri6_A 365 DA-LKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI--EEIEDLKEDILQAL 429 (430)
T ss_dssp HH-CSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred Hh-CCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHhh
Confidence 33 3445677777876651 236789999753 44555555555554
No 205
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.91 E-value=1.6e-23 Score=206.32 Aligned_cols=346 Identities=9% Similarity=0.017 Sum_probs=214.4
Q ss_pred hcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCC
Q 045431 58 LKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDG 134 (433)
Q Consensus 58 ~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G 134 (433)
...++...|||..|... + ..++.+.+++.+++..... .....|+. ....+|++++++.+.+..+...++|++++|
T Consensus 58 ~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~~~~~~-~~~~~l~~~la~~l~~~~~~~~~~v~f~~s 135 (472)
T 1ohv_A 58 VDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTF-INRPALGI-LPPENFVEKLRESLLSVAPKGMSQLITMAC 135 (472)
T ss_dssp EBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHH-HCCCCTTT-SCBTTHHHHHHHTGGGGCCTTCCEEEEESS
T ss_pred EeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccc-cccccccc-ccHHHHHHHHHHHHHHhCCCCcCEEEEeCC
Confidence 34567789999877643 2 3589999999987643211 11123432 346799999999876644456789999999
Q ss_pred hHHHHHH-HHHhc-------C------------------CC---CEEEEeCCCChhhhhhHHHhCCcccccccccccceE
Q 045431 135 AKCDISR-LQIVF-------G------------------SN---VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKI 185 (433)
Q Consensus 135 ~~~al~~-l~~l~-------~------------------~g---d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 185 (433)
+++|+.. +..+. + || +.|++.+++|+++......+.....+...+.....+
T Consensus 136 GseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~ 215 (472)
T 1ohv_A 136 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW 215 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCC
T ss_pred chhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCC
Confidence 9999986 43331 1 46 899999999998765554333211000000000000
Q ss_pred --EEeecC--c-cCC--c--------ccCCCC--CC------CccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCCEE
Q 045431 186 --EYMRCT--A-ENG--F--------FPDLST--VA------RTDIIFFCSPNNPTGA-AATREQLTRLVQFAKDNGSII 241 (433)
Q Consensus 186 --~~~~~~--~-~~~--~--------~~~~~~--~~------~~~~i~l~~p~nPtG~-~~~~~~~~~i~~~a~~~~~~l 241 (433)
+.+|.. + ... + ..++++ .+ ++++|++...+|+||. ..+.+.+++|.++|++||+++
T Consensus 216 ~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll 295 (472)
T 1ohv_A 216 PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF 295 (472)
T ss_dssp CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred cccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 111110 0 000 0 011211 11 6777666555788996 568999999999999999999
Q ss_pred EEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHH
Q 045431 242 VYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNI 321 (433)
Q Consensus 242 i~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (433)
|+||+|.++...+....+..+. .. ..+-+.||||.+ ++| ||++ ++++. .+.......+.+.+++
T Consensus 296 i~DEv~~g~g~~g~~~~~~~~g-v~-~~~Di~t~sK~~-l~G---G~~~-~~~~~---------~~~~~~~~~T~~~~~~ 359 (472)
T 1ohv_A 296 LVDEVQTGGGSTGKFWAHEHWG-LD-DPADVMTFSKKM-MTG---GFFH-KEEFR---------PNAPYRIFNTWLGDPS 359 (472)
T ss_dssp EEECTTTTTTTTSSSSGGGGGC-CS-SCCSEEEECGGG-SSE---EEEE-CGGGS---------CSSSSSSCCSSSSCHH
T ss_pred EEeCcccCCCCCCCchhccccC-CC-CCCCEEEEcccc-ccC---CccC-chhhc---------ccccccccCccCccHH
Confidence 9999999766554333332322 11 001244899995 345 7766 55442 1111223344557889
Q ss_pred HHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc--C----CeeecCCCccEEEEECCCC-ChHHHHHHHHHcCCe
Q 045431 322 SQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL--G----FKVYGGKNAPYVWVQFPGR-SSWDVFSEILEKTHV 394 (433)
Q Consensus 322 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g----~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~gi 394 (433)
+++++.++|+.... +.+.++++++++++.+.|+++ + +....+ .|.+++++++.. ....+...+++ +||
T Consensus 360 ~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~-~Gv 434 (472)
T 1ohv_A 360 KNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-RGTFCSFDTPDESIRNKLISIARN-KGV 434 (472)
T ss_dssp HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-ETTEEEEECSSHHHHHHHHHHHHH-TTE
T ss_pred HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC-CceEEEEEeCChhHHHHHHHHHHH-CCe
Confidence 99888887752111 235667777777777777664 1 332333 467788888631 24567777765 599
Q ss_pred EecCCCCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 395 VTTPGSGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 395 ~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+.|+ +.+++||+ +..+++++++++++|++++
T Consensus 435 ~~~~~------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 435 MLGGC------GDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp ECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99885 24789996 4678999999999999875
No 206
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.91 E-value=2e-23 Score=204.96 Aligned_cols=293 Identities=12% Similarity=0.112 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCChHH-HHHH-HHHhcC--CCCEEEEeCCCChhhhhhHHHhCCccccccccccc
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGAKC-DISR-LQIVFG--SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKY 182 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~-al~~-l~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~ 182 (433)
..++.+++.+++.+.++++++ +++|+|+++ ++.+ +..+.. +|+.|++++++|+.+...++..|
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G------------ 197 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVG------------ 197 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcC------------
Confidence 455666666666665687766 999999994 5443 333322 67889999999999988888888
Q ss_pred ceEEEeecCc-cCCcccCCC---C-------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 183 GKIEYMRCTA-ENGFFPDLS---T-------VARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 183 ~~~~~~~~~~-~~~~~~~~~---~-------~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
.+++.++..+ +.++..+++ + ..++.+|++++|+||||.+.+ +++|.++|+++|+++++|++|+.+.
T Consensus 198 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~ 274 (456)
T 2z67_A 198 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQN 274 (456)
T ss_dssp CEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred CCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHH
Confidence 3666666521 112222221 1 135667777899999999977 7888899999999999999998654
Q ss_pred cCCCCCcccccCCCCcceEEEecccccccccccceeeeecc-ccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhc
Q 045431 252 SDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIP-KELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACL 330 (433)
Q Consensus 252 ~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l 330 (433)
.+-.+.....+.+..| +++.|++|+++ +++++||++++ ++++ +.+...........+.+.+.+++..+
T Consensus 275 ~g~~~~~~~~~~~~~D--~~~~s~hK~~~-~p~g~G~l~~~~~~~~--------~~l~~~~~g~~~~~~~~~~~aal~~l 343 (456)
T 2z67_A 275 NYYLEKLKKAFKYRVD--AVVSSSDKNLL-TPIGGGLVYSTDAEFI--------KEISLSYPGRASATPVVNTLVSLLSM 343 (456)
T ss_dssp HHHHHHHHHHHTSCCS--EEEEEHHHHHC-CCSSCEEEEESCHHHH--------HHHHTTSCSCBCSHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhhCCCCC--EEEEcCCCCcC-CCCCeEEEEEcCHHHH--------hhcCcCCCCCCCCCHHHHHHHHHHHH
Confidence 3211111111211122 67889999874 77899999995 4443 33322111111122344555555444
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEEC--CCCChHHHHHHHHHcCCe---Eec----
Q 045431 331 SPEGFKAVHEVIGFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQF--PGRSSWDVFSEILEKTHV---VTT---- 397 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~--~~~~~~~~~~~l~~~~gi---~v~---- 397 (433)
. ..++++..++..++++++.+.|++. |+.+.++. .++++.+ ++. ..++...|.++ || .+.
T Consensus 344 ~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~-~~~l~~~L~~~-gi~~~rv~~~~g 416 (456)
T 2z67_A 344 G---SKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISVNSD-PVEIAAKLYNL-RVTGPRGIKKTD 416 (456)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEECSSC-HHHHHHHHHHT-TEESCEEECTTC
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEecccH-HHHHHHHHHHc-CCCcceEEeecC
Confidence 2 3456888899999999999999887 87777665 5566666 432 35666666654 65 342
Q ss_pred --CCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhhC
Q 045431 398 --PGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 398 --~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l~ 433 (433)
+|..|.....+++|+++. .+++++++++++|+++++
T Consensus 417 ~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~~ 456 (456)
T 2z67_A 417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKILL 456 (456)
T ss_dssp HHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC--
T ss_pred ccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHhC
Confidence 134443334579999964 689999999999998764
No 207
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.91 E-value=1.8e-21 Score=190.12 Aligned_cols=316 Identities=14% Similarity=0.063 Sum_probs=206.2
Q ss_pred CCceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH
Q 045431 62 DAEVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR 141 (433)
Q Consensus 62 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~ 141 (433)
+.++|.|+..+ .++.+.+++.+++... .|.+..+..++|+++++++ +.+ ++++++|+++++.+
T Consensus 30 ~~~~i~~~~~~----~~~~~~~a~~~~~~~~-------~~~~~~~~~~l~~~la~~~----g~~--~~i~~~sGt~a~~~ 92 (437)
T 3bb8_A 30 GKSVVPPSGKV----IGTKELQLMVEASLDG-------WLTTGRFNDAFEKKLGEYL----GVP--YVLTTTSGSSANLL 92 (437)
T ss_dssp TTSCBCSCCCC----CCHHHHHHHHHHHHHC-------CCBSCHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHH
T ss_pred CCccccCCCCC----CCHHHHHHHHHHHHcC-------CcCCChHHHHHHHHHHHHH----CCC--cEEEeCCHHHHHHH
Confidence 34467775432 3567888888877531 2445668899999999998 554 56666677788886
Q ss_pred -HHHh---------cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC-----CCCc
Q 045431 142 -LQIV---------FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST-----VART 206 (433)
Q Consensus 142 -l~~l---------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 206 (433)
+..+ +++||+|+++.|+|+++...+...| .+++.++.+++ ++..+++. .+++
T Consensus 93 al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~ 159 (437)
T 3bb8_A 93 ALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNG------------LIPVFVDVDIP-TYNVNASLIEAAVSDKT 159 (437)
T ss_dssp HHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTT------------CEEEECCEETT-TTEECGGGHHHHCCTTE
T ss_pred HHHHhhhcccccccCCCcCEEEECCCCcHHHHHHHHHcC------------CEEEEEeccCc-cCCcCHHHHHHhcCCCC
Confidence 5666 7899999999999999999998888 47777777642 22223222 3578
Q ss_pred cEEEEcC-CCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 207 DIIFFCS-PNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 207 ~~i~l~~-p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
++|++++ |+|| .+ +++|.++|+++|+++|+|++|+.....+ .. .+....| +++.||+|..+++|.+
T Consensus 160 ~~v~~~~~~g~~----~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~-~~---~~~~~~d--~~~~s~~~~k~l~~g~ 226 (437)
T 3bb8_A 160 KAIMIAHTLGNL----FD---LAEVRRVADKYNLWLIEDCCDALGSTYD-GK---MAGTFGD--IGTVSFYPAKHITMGE 226 (437)
T ss_dssp EEEEEECGGGCC----CC---HHHHHHHHHHHTCEEEEECTTCTTCEET-TE---ETTSSSS--EEEEECSTTSSSCCSS
T ss_pred eEEEEeCCCCCh----hc---HHHHHHHHHHcCCEEEEECccccCceEC-Ce---ecccccC--EEEEECcCCcCCCCCC
Confidence 8998874 4444 44 8899999999999999999998432211 11 1211123 7778998888889999
Q ss_pred eeeeeccccccccCCcchhHHHHHHHhh---------------------------------------ccCCCcHHHHHHH
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFNRIVCT---------------------------------------CFNGASNISQAGG 326 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~q~~~ 326 (433)
.|+++++++.+. ..+...... .....+.+.+.++
T Consensus 227 gg~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~ 299 (437)
T 3bb8_A 227 GGAVFTQSAELK-------SIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACG 299 (437)
T ss_dssp CEEEEESCHHHH-------HHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHH
T ss_pred eEEEEeCCHHHH-------HHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHH
Confidence 999999876541 111111100 0011235555555
Q ss_pred HHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeecCC-------CccEE-EEECC-CCChHHHHHHHHHcCCeEe
Q 045431 327 LACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYGGK-------NAPYV-WVQFP-GRSSWDVFSEILEKTHVVT 396 (433)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-------~g~~~-~~~~~-~~~~~~~~~~l~~~~gi~v 396 (433)
.+.++ .+++..++.+++.+++.+.|+++ |+...+.. ...|+ .+..+ +.+..++...|.+ +||.+
T Consensus 300 l~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~GI~v 373 (437)
T 3bb8_A 300 LAQLE-----RIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDE-AKVGT 373 (437)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHH-TTBCC
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHH-CCCce
Confidence 55543 22444455577788889999887 66554311 11233 24443 4466677777665 49999
Q ss_pred cCCCC--CC--CCC------------------CCeEEEee--ccChhHHHHHHHHHHHhhC
Q 045431 397 TPGSG--FG--PGG------------------EGFIRVSA--FGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 397 ~~g~~--f~--~~~------------------~~~iRi~~--~~~~~~l~~~l~~l~~~l~ 433 (433)
+++.. +. +.. .+.+||++ ..+++|++..++.|+++++
T Consensus 374 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 374 RLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp BCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred eccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 88764 11 100 12499996 3489999999999998763
No 208
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.90 E-value=1.7e-22 Score=200.59 Aligned_cols=332 Identities=12% Similarity=0.097 Sum_probs=213.8
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC-CcEEEcCChHHHHHH-HHH----hc---
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE-GDIFVSDGAKCDISR-LQI----VF--- 146 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~al~~-l~~----l~--- 146 (433)
+.++.+.+++.....+ .....|+...+..++.+++.+++.+.+++++ +++++|+|+++++.+ +.. ++
T Consensus 111 ~~~~~v~~~~~~~~~n----~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~ 186 (497)
T 2qma_A 111 PLMPAVAAEAMIAALN----QSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKL 186 (497)
T ss_dssp CBHHHHHHHHHHHHHC----CCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhc----ccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhh
Confidence 4677777777665543 2344565555778888888888877667765 899999999999876 433 23
Q ss_pred ------CC------CC-EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC----Cc
Q 045431 147 ------GS------NV-TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA----RT 206 (433)
Q Consensus 147 ------~~------gd-~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~----~~ 206 (433)
.+ |+ .|++..++|.++...+..+|. +. .+++.+|.+.+..++.+ +++ .+ ++
T Consensus 187 ~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~-g~--------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~ 257 (497)
T 2qma_A 187 SGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL-GE--------KAVMTVDANADGTMDITKLDEVIAQAKAEGL 257 (497)
T ss_dssp HCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTS-CG--------GGEEEECBCTTSSBCGGGHHHHHHHHHHTTC
T ss_pred cccchhhcccccccCCeEEEECCCchHHHHHHHHHcCC-Cc--------ccEEEEecCCCCcCCHHHHHHHHHHHHHCCC
Confidence 13 46 799999999999888888873 10 15777887643322222 221 01 23
Q ss_pred c--EEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEeccccccccccc
Q 045431 207 D--IIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGV 284 (433)
Q Consensus 207 ~--~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~ 284 (433)
+ +|++++++||||...+ +++|.++|++||+++++|++|+.+........ .+.+.....++..|+||+++ .+.
T Consensus 258 ~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~--~~~gi~~~D~i~~s~hK~l~-~p~ 331 (497)
T 2qma_A 258 IPFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSSHKS--RLKGVERAHSISVDFHKLFY-QTI 331 (497)
T ss_dssp EEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG--GGTTGGGCSEEEEETTTTTC-CCS
T ss_pred cceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCcchH--hhcCcccCCEEEEcchhccC-CCc
Confidence 3 7777899999999766 88999999999999999999997655332111 12221122367789999987 557
Q ss_pred ceeeeeccccccccCCcchhHHHHHHH----hh------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHH
Q 045431 285 RLGWTVIPKELLFSDGFPVAKDFNRIV----CT------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVE 354 (433)
Q Consensus 285 r~G~l~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 354 (433)
++|+++++++............+.... .. .......+.+.++...+. .+.++++.++..++++++.+
T Consensus 332 ~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg---~~g~~~~~~~~~~~a~~l~~ 408 (497)
T 2qma_A 332 SCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG---PKALGDMYDHLLAQTLEVAD 408 (497)
T ss_dssp SCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHH
Confidence 999999876653111100000000000 00 000012334444455543 34567888889999999999
Q ss_pred HHhhc-CCeeecCCCccEEEEECCCCC------hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee---ccChhHHHHH
Q 045431 355 TFNSL-GFKVYGGKNAPYVWVQFPGRS------SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA---FGHRGNVLEA 424 (433)
Q Consensus 355 ~l~~~-g~~~~~~~~g~~~~~~~~~~~------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~---~~~~~~l~~~ 424 (433)
.|++. ++++..+..+.++++++.+.. ..++...+.++ |+.+.++..+ .+.+++|+++ +.++++++++
T Consensus 409 ~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~-G~~~~~~~~~--~g~~~lRis~~~~~~t~edi~~~ 485 (497)
T 2qma_A 409 MIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTR-GIAVLGETIV--DGKTALKFTILNPCLTTSDFESL 485 (497)
T ss_dssp HHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHH-TSCBCEEEEE--TTEEEEEEECCCTTCCHHHHHHH
T ss_pred HHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhC-CCEEEEeeEE--CCEEEEEEEecCCCCCHHHHHHH
Confidence 99987 888764445667777775321 12344555544 9888665433 2356899996 4689999999
Q ss_pred HHHHHHhh
Q 045431 425 CKRFKHLY 432 (433)
Q Consensus 425 l~~l~~~l 432 (433)
+++|++++
T Consensus 486 ~~~l~~~~ 493 (497)
T 2qma_A 486 LSKINMLA 493 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 209
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.90 E-value=1.4e-22 Score=200.73 Aligned_cols=326 Identities=11% Similarity=-0.013 Sum_probs=209.9
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC---------CcEEEcCChHHHHHH-HHHhc
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE---------GDIFVSDGAKCDISR-LQIVF 146 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~---------~~i~~~~G~~~al~~-l~~l~ 146 (433)
+|..+.+.+...+. .....|....+..++++++++|+.+.++.+. .++++|+|+++++.+ +..+.
T Consensus 86 ~~~~~~~~~~~~~n-----~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 86 YPAMLADMLCGAIG-----CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp HHHHHHHHHHHHHC-----CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----cCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence 34456667776653 3445676666789999999999988666653 468999999999775 43332
Q ss_pred C---C------CC--------E--EEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC
Q 045431 147 G---S------NV--------T--MAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA 204 (433)
Q Consensus 147 ~---~------gd--------~--Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~ 204 (433)
. + || . |++++++|+++...++.+| .+++.++.+.+..++.+ +++ .+
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G------------~~v~~v~~d~~~~~d~~~L~~~i~~ 228 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGG------------VKLKAIPSDGKFAMRASALQEALER 228 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHT------------CEEEEECCCTTSCCCHHHHHHHHHH
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCC------------CceEEeecCCCCCCCHHHHHHHHHH
Confidence 1 1 42 3 7889999999999999999 47888888643222222 221 12
Q ss_pred Cc------cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCc-ccccCCCCcceEEEeccc
Q 045431 205 RT------DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRS-IFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 205 ~~------~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~-~~~~~~~~~~vi~i~S~s 276 (433)
++ .+|++++|+||||.+-+ +++|+++|++||+++++|++|+.+.... .... +..+.+ ...+..|+|
T Consensus 229 ~~~~g~~p~~vv~~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~---adsi~~~~h 302 (486)
T 1js3_A 229 DKAAGLIPFFVVATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEF---ADSFNFNPH 302 (486)
T ss_dssp HHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGG---CSEEEECHH
T ss_pred HHhCCCCceEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccc---cCeeEEchh
Confidence 23 37888899999998755 8999999999999999999999754322 1211 112222 125567899
Q ss_pred ccccccccceeeeecccccc-ccCCcchhHHHHHHHh-------------hccCCCcHHHHHHHHHhcCcCChhHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELL-FSDGFPVAKDFNRIVC-------------TCFNGASNISQAGGLACLSPEGFKAVHEVI 342 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 342 (433)
|+++. .+++||+++++... .+........+..... ........+.+.+++..+ +.++++++.
T Consensus 303 K~~~~-p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~---g~~g~~~~~ 378 (486)
T 1js3_A 303 KWLLV-NFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY---GVKGLQAYI 378 (486)
T ss_dssp HHSSC-CSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH---HHHHHHHHH
T ss_pred hhcCC-CcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH---hHHHHHHHH
Confidence 99974 48999999976532 1100000000100000 001112345555555554 235678888
Q ss_pred HHHHHHHHHHHHHHhhc-CCeeecCCCccEEEEECCCCC--hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---c
Q 045431 343 GFYKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGRS--SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---G 416 (433)
Q Consensus 343 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~--~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~ 416 (433)
++..++++++.+.|++. |+++..+....++.+++++.+ ..++...+.++ |+.+.++..+. +.+++|+++. .
T Consensus 379 ~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~--~~~~lRi~~~~~~~ 455 (486)
T 1js3_A 379 RKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSA-RKIHLVPCRLR--GQFVLRFAICSRKV 455 (486)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhc-CCEEEEEEEEC--CEEEEEEEeCCCCC
Confidence 89999999999999987 888865334455556665322 45666666655 65543333332 3578999963 3
Q ss_pred ChhHHHHHHHHHHHhh
Q 045431 417 HRGNVLEACKRFKHLY 432 (433)
Q Consensus 417 ~~~~l~~~l~~l~~~l 432 (433)
+++++++++++|++++
T Consensus 456 t~~di~~~~~~l~~~~ 471 (486)
T 1js3_A 456 ESGHVRLAWEHIRGLA 471 (486)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6889999999998764
No 210
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.90 E-value=4.3e-22 Score=190.44 Aligned_cols=314 Identities=13% Similarity=0.112 Sum_probs=205.1
Q ss_pred ecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHH-HHHHhccCCCCCCcEEEcCChHHHHHH-HHHh
Q 045431 68 LGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAI-ASTFYKDLGIEEGDIFVSDGAKCDISR-LQIV 145 (433)
Q Consensus 68 l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~l-a~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l 145 (433)
...+.|++++++.+.+++.+.+.. ..+..|+ ....+|++++ |+++ + ..+++++++|+++++.+ +..+
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~----~~~~~~~--~~~~~l~~~~~a~~~----g-~~~~~v~~~sgt~al~~al~~l 73 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDAS----HIYTNYG--PINQRFEQTIMSGFF----Q-NRGAVTTVANATLGLMAAIQLK 73 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHH----TCCSSSC--HHHHHHHHHHHHHTS----T-TCSEEEEESCHHHHHHHHHHHH
T ss_pred eeccCCCCCCcHHHHHHHHHHHHc----CCcccCC--HHHHHHHHHHHHHHh----C-CCCeEEEeCCHHHHHHHHHHHc
Confidence 445688899999999999998864 2222233 3578999999 9986 5 25678888889999887 6676
Q ss_pred -cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C---CCC--ccEEEEcCCCC
Q 045431 146 -FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T---VAR--TDIIFFCSPNN 216 (433)
Q Consensus 146 -~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~--~~~i~l~~p~n 216 (433)
+++||+|+++.|+|+.+...+...| .+++.++++++ ++..+++ + .++ +++|+ |+|
T Consensus 74 ~~~~Gd~Vi~~~~~~~~~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~tk~v~---~~~ 137 (377)
T 3ju7_A 74 KRKKGKYALMPSFTFPATPLAAIWCG------------LEPYFIDISID-DWYMDKTVLWDKIEELKEEVAIVV---PYA 137 (377)
T ss_dssp SCTTCCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHHHHHHHHGGGEEEEC---CBC
T ss_pred CCCCcCEEEECCCCcHHHHHHHHHcC------------CEEEEEecCCc-cCCcCHHHHHHHHhcCCCCceEEE---EEC
Confidence 8999999999999999999999888 47888888643 3333332 1 234 77766 678
Q ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecc--cccccccccceeeeecccc
Q 045431 217 PTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSF--SKYAGFTGVRLGWTVIPKE 294 (433)
Q Consensus 217 PtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--sK~~~~~G~r~G~l~~~~~ 294 (433)
|||.+.+ +++|.++|+ ||++||+|++|+...... ..++. ....+ +.+.|| +|.++ +| +.|+++++++
T Consensus 138 ~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~-~~~~g--~~~~d--~~~~S~~~~K~l~-~g-~gG~~~~~~~ 206 (377)
T 3ju7_A 138 TFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNG-GMHYG--QDFSG--MIIYSFHATKPFG-IG-EGGLIYSKNE 206 (377)
T ss_dssp GGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEET-TEETT--TTCSS--EEEEECBTTSSSC-CB-SCEEEEESCH
T ss_pred CCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeEC-CEecc--CCCCc--EEEEECCCCCcCC-CC-CcEEEEECCH
Confidence 9999887 677888888 999999999998532211 11110 00123 444554 69997 45 6788887655
Q ss_pred ccccCCcchhHHHHHHHhhc------------cCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcC--
Q 045431 295 LLFSDGFPVAKDFNRIVCTC------------FNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLG-- 360 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-- 360 (433)
.+ .+.+....... ....+.+.++.+...+ ++++...++.+++++.+.+.|++++
T Consensus 207 ~l-------~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l-----~~l~~~~~~~~~~~~~~~~~L~~~~~~ 274 (377)
T 3ju7_A 207 ED-------IQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM-----KKWDDKLKERTRISEWYKQLLQSNGLM 274 (377)
T ss_dssp HH-------HHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HH-------HHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 43 34444443311 2334555544444443 3346666777778888888888773
Q ss_pred -CeeecCCC--c--cEEEEECCCCC-hHHHHHHHHHcCCeEecCCCC--CCC------C--C---------CCeEEEeec
Q 045431 361 -FKVYGGKN--A--PYVWVQFPGRS-SWDVFSEILEKTHVVTTPGSG--FGP------G--G---------EGFIRVSAF 415 (433)
Q Consensus 361 -~~~~~~~~--g--~~~~~~~~~~~-~~~~~~~l~~~~gi~v~~g~~--f~~------~--~---------~~~iRi~~~ 415 (433)
+.+..... . .++.+.++... ..++...| +++||.++.+.. +.. . + .+.+||.+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~ 353 (377)
T 3ju7_A 275 KKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLW 353 (377)
T ss_dssp TTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCC
T ss_pred cccccCCCCCcceEEEEEEEeCChhhHHHHHHHH-HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCC
Confidence 22322111 1 23456666433 45555555 556999987762 210 0 0 246899864
Q ss_pred --cChhHHHHHHHHHHHhh
Q 045431 416 --GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 416 --~~~~~l~~~l~~l~~~l 432 (433)
.+++|++..++.|++++
T Consensus 354 ~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 354 EGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp TTCCHHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 48999999999998765
No 211
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.90 E-value=5.4e-22 Score=190.87 Aligned_cols=282 Identities=14% Similarity=0.115 Sum_probs=182.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHH-----hCCccccccc
Q 045431 104 EQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVI-----MGQTGEFQKD 178 (433)
Q Consensus 104 ~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~-----~g~~~~~~~~ 178 (433)
.....+|++.++++. +.+ +.++++++++++.++..++++||+|++++|+|.+....+.. .|
T Consensus 66 ~p~~~~l~~~la~l~----g~~--~~~~~~sG~~Ai~~~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g-------- 131 (400)
T 3nmy_A 66 NPTRFAYERCVAALE----GGT--RAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAG-------- 131 (400)
T ss_dssp CHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHC--------
T ss_pred CHHHHHHHHHHHHHh----CCC--CEEEecCHHHHHHHHHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcC--------
Confidence 344567888888876 433 55555666899988778899999999999999976655443 36
Q ss_pred ccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Q 045431 179 AEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRS 258 (433)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~ 258 (433)
.+++.++.++...+...+ .+++++|++++|+||||.+++ +++|.++|++||+++|+|++|+...... +
T Consensus 132 ----~~~~~v~~~d~~~l~~~i--~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-~-- 199 (400)
T 3nmy_A 132 ----LDFSFVDLTDPAAFKAAI--RADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR-P-- 199 (400)
T ss_dssp ----CEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-G--
T ss_pred ----eEEEEECCCCHHHHHHHh--ccCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC-h--
Confidence 467777764221111111 257899999999999999998 8899999999999999999998533221 1
Q ss_pred ccccCCCCcceEEEecccccccccccceee--eec-cccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRLGW--TVI-PKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~--l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
+ .+ +..+++.|+||.++.+|.++|. +++ ++++ .+.+...........++....++.+.++.
T Consensus 200 ~-~~----g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~--------~~~l~~~~~~~g~~~~~~~a~~~l~~l~~--- 263 (400)
T 3nmy_A 200 L-SL----GADLVVHSATKYLNGHSDMVGGIAVVGDNAEL--------AEQMAFLQNSIGGVQGPFDSFLALRGLKT--- 263 (400)
T ss_dssp G-GG----TCSEEEEETTTTTTCSSSCCCEEEEECSCHHH--------HHHHHHHHHHHCCBCCHHHHHHHHHHHTT---
T ss_pred h-hc----CCcEEEecCccccCCCCCcceeEEEEeCCHHH--------HHHHHHHHHhcCCCCCHHHHHHHHHhHhH---
Confidence 1 11 2348899999999877777765 444 3444 35555555544555667766666655542
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-CCe-eecC----------------CCccEEEEECCCC-C-hHHHHHHHHHcCCeE
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSL-GFK-VYGG----------------KNAPYVWVQFPGR-S-SWDVFSEILEKTHVV 395 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~----------------~~g~~~~~~~~~~-~-~~~~~~~l~~~~gi~ 395 (433)
+..+.++..++.+.+.+.|+++ .+. +..| ..|.++++.+++. . ...+... ++-.++.
T Consensus 264 --l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~-l~~~~~~ 340 (400)
T 3nmy_A 264 --LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEK-TELFTLA 340 (400)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHH-CSSSEEC
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHc-CCcceEe
Confidence 3556667788888899999876 343 2222 1467899999742 1 1222222 3333555
Q ss_pred ecCCCCCC---------------------CCCCCeEEEeeccChhHHHHHHHHHHHhh
Q 045431 396 TTPGSGFG---------------------PGGEGFIRVSAFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 396 v~~g~~f~---------------------~~~~~~iRi~~~~~~~~l~~~l~~l~~~l 432 (433)
+..|..++ ...++.+|+|++.. +.+..++.|+++|
T Consensus 341 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle--~~~dli~dl~~al 396 (400)
T 3nmy_A 341 ESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIE--DLGDLRGDLERAL 396 (400)
T ss_dssp SCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHH
T ss_pred cCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcC--CHHHHHHHHHHHH
Confidence 55554432 11357899998652 2333344455444
No 212
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.90 E-value=7.9e-22 Score=193.07 Aligned_cols=341 Identities=11% Similarity=0.062 Sum_probs=195.5
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhccc-C-CCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCc---EEEcCChHHHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALST-Q-EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGD---IFVSDGAKCDI 139 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~---i~~~~G~~~al 139 (433)
.|.|-.+++ .+++.+.+++...+.+... . .+...|+-..-..+|++...+++.+.++++.+. .++++++++++
T Consensus 56 ~i~lias~n--~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An 133 (490)
T 2a7v_A 56 GLELIASEN--FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPAN 133 (490)
T ss_dssp SEECCTTCC--CCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHH
T ss_pred CceEECCCC--CCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHH
Confidence 477766544 3789999999887754211 0 011112212223466643334444434777653 24444567777
Q ss_pred HH-HHHhcCCCCEEEEeCCCChhhhh--------hHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CC
Q 045431 140 SR-LQIVFGSNVTMAVQDPSYPAYVD--------SSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VA 204 (433)
Q Consensus 140 ~~-l~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 204 (433)
.+ +.++++|||+|++.++.|.++.. .+...|.. ..++.++++++. ...+++. ..
T Consensus 134 ~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~----------~~~~~~~vd~~~-~~iD~d~le~~l~~~ 202 (490)
T 2a7v_A 134 LAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF----------FESMPYKLNPKT-GLIDYNQLALTARLF 202 (490)
T ss_dssp HHHHHHHCCSCEECCC-----------------------------------------CCBCTTT-CSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCe----------EEEEeccccccc-CCcCHHHHHHHHhhc
Confidence 75 78899999999999999876432 12223321 133444444322 2333322 13
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCC-CCcccccCCCCcceEEEeccccccccc
Q 045431 205 RTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFT 282 (433)
Q Consensus 205 ~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~ 282 (433)
++++|++++|+||+ ..+ +++|.++|++||+++++|++|. ++...+. +.++ +. ..+++.|+||++ .
T Consensus 203 ~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~---aDiv~~S~hK~l--~ 269 (490)
T 2a7v_A 203 RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KH---ADIVTTTTHKTL--R 269 (490)
T ss_dssp CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GT---CSEEEEESSGGG--C
T ss_pred CCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCcCCCCC---CC---CCEEEECCcccC--c
Confidence 67888888889875 334 8899999999999999999976 3444432 2232 12 238889999988 4
Q ss_pred ccceeeeeccccccccCC-------cchhHHHHHHHhhccCCCcHHH-HHHHHHhcCcCChhHHHHHHHHHHHHHHHHHH
Q 045431 283 GVRLGWTVIPKELLFSDG-------FPVAKDFNRIVCTCFNGASNIS-QAGGLACLSPEGFKAVHEVIGFYKENTDIIVE 354 (433)
Q Consensus 283 G~r~G~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 354 (433)
|.|.|+++++++++..+. ..+.+.++........+.+... .++...++........++..+++.++++++.+
T Consensus 270 Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~ 349 (490)
T 2a7v_A 270 GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMAD 349 (490)
T ss_dssp SCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred cccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 678899999886421000 0123455544333222223333 33323333321112346778889999999999
Q ss_pred HHhhcCCeeec-CCCccEEEEECCC--CChHHHHHHHHHcCCeEecCCCCCC---CCCCCeEEEee------ccChhHHH
Q 045431 355 TFNSLGFKVYG-GKNAPYVWVQFPG--RSSWDVFSEILEKTHVVTTPGSGFG---PGGEGFIRVSA------FGHRGNVL 422 (433)
Q Consensus 355 ~l~~~g~~~~~-~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~---~~~~~~iRi~~------~~~~~~l~ 422 (433)
.|.+.|+.+.. +....++|+++.. .+..+ +...+++.||.+..+..++ +..++.|||+. ..++++++
T Consensus 350 ~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~-~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~ 428 (490)
T 2a7v_A 350 ALLERGYSLVSGGTDNHLVLVDLRPKGLDGAR-AERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFR 428 (490)
T ss_dssp HHHHTTCEEGGGSCSSSEEEEECTTTTCCHHH-HHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHH
T ss_pred HHHHcCcEEecCCCCCeEEEEEeCCCCCCHHH-HHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHH
Confidence 99999998864 3456789999863 34444 4555667799998543332 33457899974 23789999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
++++.|.+++
T Consensus 429 ~~~~~i~~~l 438 (490)
T 2a7v_A 429 RVVDFIDEGV 438 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 213
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.89 E-value=4.8e-22 Score=197.73 Aligned_cols=315 Identities=10% Similarity=0.067 Sum_probs=204.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCC--CCcEEEcCChHHHHHH-HHHhc--------CCC-----C-EEEEeCCCCh
Q 045431 98 YSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISR-LQIVF--------GSN-----V-TMAVQDPSYP 160 (433)
Q Consensus 98 ~~~Y~~~~g~~~lr~~la~~l~~~~~~~--~~~i~~~~G~~~al~~-l~~l~--------~~g-----d-~Vl~~~p~~~ 160 (433)
...|....+..++++++.+++.+.++++ ++++++|+|+++++.+ +..+. .+| + .|++++++|+
T Consensus 121 ~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~ 200 (504)
T 2okj_A 121 MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY 200 (504)
T ss_dssp SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred CCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH
Confidence 3467666667788888888887755666 7899999999999886 44442 256 6 7899999999
Q ss_pred hhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC------CccEEEEcCCCCccccCCCHHHHHHHH
Q 045431 161 AYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA------RTDIIFFCSPNNPTGAAATREQLTRLV 231 (433)
Q Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~------~~~~i~l~~p~nPtG~~~~~~~~~~i~ 231 (433)
++...+..+|. +. .+++.+|.+.+..++.+ +++ .+ ++++|++++|+||||.+.+ +++|.
T Consensus 201 s~~~~~~~~g~-g~--------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~ 268 (504)
T 2okj_A 201 SIKKAGAALGF-GT--------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIA 268 (504)
T ss_dssp HHHHHHHHTTS-CG--------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHH
T ss_pred HHHHHHHHcCC-Cc--------ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHH
Confidence 99988888873 11 15777887643322222 211 11 5788999999999999877 88899
Q ss_pred HHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeeecccc-cccc---CCcchh-H
Q 045431 232 QFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKE-LLFS---DGFPVA-K 305 (433)
Q Consensus 232 ~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~-~~~~---~~~~~~-~ 305 (433)
++|++||+++++|++|+.+..... ... .+++.....++..|++|+++ .+.++|++++++. ++.. ...... .
T Consensus 269 ~la~~~g~~lhvD~a~~~~~~~~~~~~~--~~~g~~~~D~i~~~~hK~~~-~p~~~g~l~~~~~~~~~~~~~~~~~~l~~ 345 (504)
T 2okj_A 269 DICEKYNLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMG-VLLQCSAILVKEKGILQGCNQMCAGYLFQ 345 (504)
T ss_dssp HHHHHHTCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTC-CCSCCEEEEESSTTHHHHHHCCCCSSSCC
T ss_pred HHHHHcCCEEEEehhhhhHHHhCHhhHh--hcCCcccCCEEEECchhhcC-CCcceEEEEEECHHHHHHHhcCCCccccC
Confidence 999999999999999997654321 111 11211122367789999997 4478999998874 4310 000000 0
Q ss_pred --H-------HHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec---CCCccEE
Q 045431 306 --D-------FNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG---GKNAPYV 372 (433)
Q Consensus 306 --~-------~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~---~~~g~~~ 372 (433)
. +.............+.+.++.+++. .+.++++.++..++++++.+.|++. |+++.. |..++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~ 422 (504)
T 2okj_A 346 PDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG---TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVC 422 (504)
T ss_dssp SCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEE
T ss_pred CcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEE
Confidence 0 0000000000123555665656553 3456788888999999999999987 888874 5556665
Q ss_pred EEECCCC----------------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cChhHHHHHHHHHHHhh
Q 045431 373 WVQFPGR----------------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 373 ~~~~~~~----------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
+...+.. ...++...+.++ |+.+..+..+. ...+++|+++. ++++++++++++|++++
T Consensus 423 f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~-~~~~~lRis~~~~~~t~edi~~~~~~l~~~~ 499 (504)
T 2okj_A 423 FWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQG-DKANFFRMVISNPAATQSDIDFLIEEIERLG 499 (504)
T ss_dssp EEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEET-TEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEEC-CceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5444421 023455666655 75433222221 11368999985 58999999999998875
No 214
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.89 E-value=9.1e-22 Score=195.47 Aligned_cols=322 Identities=10% Similarity=0.076 Sum_probs=210.2
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCC--CCcEEEcCChHHHHHH-HHHhcC-------
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIE--EGDIFVSDGAKCDISR-LQIVFG------- 147 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~--~~~i~~~~G~~~al~~-l~~l~~------- 147 (433)
+..+.+.+..++. .....|....+..++++++++|+.+.++.+ ++.+++|+|+++++.. +..+..
T Consensus 109 ~~~~~e~l~~~~~-----~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 183 (511)
T 3vp6_A 109 IGLAGEWLTSTAN-----TNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVK 183 (511)
T ss_dssp HHHHHHHHHHHHC-----CCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhc-----cCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhh
Confidence 3444566666654 455678778899999999999998855554 5799999999999775 444332
Q ss_pred -------CCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--CC------CccEEEE
Q 045431 148 -------SNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VA------RTDIIFF 211 (433)
Q Consensus 148 -------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~------~~~~i~l 211 (433)
+++.|++++++|+++...++.+|... .+++.++.+.+..++.+ +++ .+ .+++|++
T Consensus 184 ~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~---------~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~ 254 (511)
T 3vp6_A 184 TKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNA 254 (511)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hcCcccCCCeEEEECCCchHHHHHHHHHcCCCC---------CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 57899999999999999999888421 16778887654333222 221 11 2788888
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcccccCCCCcceEEEecccccccccccceeeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTV 290 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~ 290 (433)
++|+||||.+-+ +++|+++|++||+++++|++|+....... ... .+.+.....++..+++|+++ ....+|+++
T Consensus 255 ~~~~~~~G~vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~--~~~g~~~aDsv~~~~hK~l~-~p~g~g~l~ 328 (511)
T 3vp6_A 255 TAGTTVYGAFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMG-VLLQCSAIL 328 (511)
T ss_dssp EBSCSSSCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTC-CCSCCEEEE
T ss_pred ecCCCCCccccc---HHHHHHHHHHcCCEEEEEccchhhHhhChhhhh--hccCCccCCEEEECcccccC-CCcCeEEEE
Confidence 999999999855 89999999999999999999987444221 111 11111122367789999997 446789888
Q ss_pred ccccccccCCcchhHHHHH----HH-----------------hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHH
Q 045431 291 IPKELLFSDGFPVAKDFNR----IV-----------------CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENT 349 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~----~~-----------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (433)
+++.... ..... +. .........+...+++.++ +.++++++.++..++.
T Consensus 329 ~~~~~~~-------~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~---g~~gl~~~~~~~~~~a 398 (511)
T 3vp6_A 329 VKEKGIL-------QGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK---GTVGFENQINKCLELA 398 (511)
T ss_dssp ESSTTHH-------HHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred EeCHHHH-------HHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH---hHHHHHHHHHHHHHHH
Confidence 8765320 11100 00 0000012234444444444 3456788999999999
Q ss_pred HHHHHHHhhc-CCeeec---CCCccEEEEEC-C-CCC---------------hHHHHHHHHHcCCeEecCCCCCCCCCCC
Q 045431 350 DIIVETFNSL-GFKVYG---GKNAPYVWVQF-P-GRS---------------SWDVFSEILEKTHVVTTPGSGFGPGGEG 408 (433)
Q Consensus 350 ~~l~~~l~~~-g~~~~~---~~~g~~~~~~~-~-~~~---------------~~~~~~~l~~~~gi~v~~g~~f~~~~~~ 408 (433)
+++.+.|++. |+++.. |..+. +++++ | +.+ ..++.+.|.++ |+.+.. ..+...+.+
T Consensus 399 ~~l~~~L~~~pg~~l~~~~~p~~~~-v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~-~~~~~~~~~ 475 (511)
T 3vp6_A 399 EYLYAKIKNREEFEMVFNGEPEHTN-VCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVG-YQPQGDKAN 475 (511)
T ss_dssp HHHHHHHHSCTTEEESSSSCCSSSC-EEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEE-EEEETTEEE
T ss_pred HHHHHHHhcCCCEEEEecCCCCeEE-EEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEE-EEEeCCceE
Confidence 9999999987 888875 43444 44443 3 110 12456666665 754433 111122345
Q ss_pred eEEEeec---cChhHHHHHHHHHHHhh
Q 045431 409 FIRVSAF---GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 409 ~iRi~~~---~~~~~l~~~l~~l~~~l 432 (433)
++|++++ .+.++++.+++.|+++-
T Consensus 476 ~lRi~~~~~~~t~~di~~ll~~i~~~~ 502 (511)
T 3vp6_A 476 FFRMVISNPAATQSDIDFLIEEIERLG 502 (511)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 7999973 37899999999998763
No 215
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.89 E-value=1.4e-21 Score=189.83 Aligned_cols=288 Identities=13% Similarity=0.076 Sum_probs=181.5
Q ss_pred CCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhH----HHhCCccccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSS----VIMGQTGEFQKDAE 180 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~~~~~ 180 (433)
...++++.+++++ +.+ +.|++++| ++++.+ +..++++||+|+++.++|+++...+ ...|
T Consensus 59 ~~~~l~~~la~~~----g~~-~~v~~~sG-t~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g---------- 122 (421)
T 2ctz_A 59 TVDVLEKRLAALE----GGK-AALATASG-HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG---------- 122 (421)
T ss_dssp HHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTT----------
T ss_pred HHHHHHHHHHHHh----CCC-ceEEecCH-HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC----------
Confidence 4578999999997 544 45666665 888886 6677899999999999999887665 5556
Q ss_pred ccceEEEe-ecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccc-cccccCCCCCc
Q 045431 181 KYGKIEYM-RCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAY-ALYISDDNPRS 258 (433)
Q Consensus 181 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~-~~~~~~~~~~~ 258 (433)
.+++.+ +.++...+...+ .+++++|++++|+||||.+++ +++|.++|++||+++|+|++| + +.+...+
T Consensus 123 --~~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~-~g~~~~~-- 192 (421)
T 2ctz_A 123 --IEVRFTSREERPEEFLALT--DEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGM-GGYLLRP-- 192 (421)
T ss_dssp --CEEEECCTTCCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGG-GGTSCCG--
T ss_pred --CEEEEECCCCCHHHHHHhh--ccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccc-ccccCCc--
Confidence 367777 553211111111 257899999999999999999 889999999999999999999 5 3232222
Q ss_pred ccccCCCCcceEEEecccccccccccceeeeeccc---cccccCCcchhH------------H------HH--HH--Hhh
Q 045431 259 IFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPK---ELLFSDGFPVAK------------D------FN--RI--VCT 313 (433)
Q Consensus 259 ~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~---~~~~~~~~~~~~------------~------~~--~~--~~~ 313 (433)
+ .. +..+++.|+||.++.+|.|+|++++.+ ++.......+.. . .. +. ...
T Consensus 193 ~-~~----~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~ 267 (421)
T 2ctz_A 193 L-AW----GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRD 267 (421)
T ss_dssp G-GG----TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHH
T ss_pred c-cc----CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHh
Confidence 2 22 124889999999998899999888752 120000000000 0 00 00 011
Q ss_pred ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-CCeeec-C-----------------CCccEEEE
Q 045431 314 CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-GFKVYG-G-----------------KNAPYVWV 374 (433)
Q Consensus 314 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~-----------------~~g~~~~~ 374 (433)
.....+++...++...++ .+..+.++..++.+.+.+.|+++ ++..+. | ..|..+.+
T Consensus 268 ~g~~~~~~~a~~~~~~l~-----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf 342 (421)
T 2ctz_A 268 QGQALGPFEAWVVLLGME-----TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTF 342 (421)
T ss_dssp HCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEE
T ss_pred cCCCCCHHHHHHHHcCcc-----hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEE
Confidence 112334444444444333 23445566668888999999887 666541 1 23556777
Q ss_pred ECCCCChHHHHHHHHH---cCCeEecCCCCCCC---------------------CCCCeEEEeeccChhHHHHHHHHHHH
Q 045431 375 QFPGRSSWDVFSEILE---KTHVVTTPGSGFGP---------------------GGEGFIRVSAFGHRGNVLEACKRFKH 430 (433)
Q Consensus 375 ~~~~~~~~~~~~~l~~---~~gi~v~~g~~f~~---------------------~~~~~iRi~~~~~~~~l~~~l~~l~~ 430 (433)
.+.+. .+....++. ..++.+..|..+.. ..++.+|+|+. .++++..++.|++
T Consensus 343 ~l~~~--~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g--~e~~~~li~~l~~ 418 (421)
T 2ctz_A 343 GLKGG--YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG--LEHVEDLKAELKE 418 (421)
T ss_dssp EETTH--HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC--SSCHHHHHHHHHH
T ss_pred EeCCC--HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeC--CCCHHHHHHHHHH
Confidence 87642 222233333 23555555532210 12479999975 4688888888888
Q ss_pred hhC
Q 045431 431 LYK 433 (433)
Q Consensus 431 ~l~ 433 (433)
+++
T Consensus 419 al~ 421 (421)
T 2ctz_A 419 ALA 421 (421)
T ss_dssp HTC
T ss_pred HhC
Confidence 764
No 216
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.87 E-value=1.9e-21 Score=187.42 Aligned_cols=257 Identities=14% Similarity=0.116 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHhhc--ccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE--cCChHHHHHH-HHHhcCCCCEEE
Q 045431 79 EVITSALAKRSYAL--STQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV--SDGAKCDISR-LQIVFGSNVTMA 153 (433)
Q Consensus 79 ~~~~~a~~~~~~~~--~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~--~~G~~~al~~-l~~l~~~gd~Vl 153 (433)
+.+++++.++.... .+......|+ ..|..+|++.+|+++ +.+.. ++. ++|+++++.+ +.++++|||+|+
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~-~~~~~~Le~~lA~l~----g~e~a-lv~p~~~sGt~Ai~~al~all~pGD~Vl 119 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYG-DIGRDSLDAVYARVF----NTESA-LVRPHFVNGTHALGAALFGNLRPGNTML 119 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTT-CHHHHHHHHHHHHHH----TCSEE-EEETTCCSHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCC-HHHHHHHHHHHHHHh----CCcce-EEeCCCccHHHHHHHHHHHHhCCCCEEE
Confidence 45667776643111 1112223453 346788999999987 65433 442 6777788876 688999999999
Q ss_pred EeC-CCChhhhhhH-----------HHhCCcccccccccccceEEEeecCccCCcccC-CCC--C--CCccEEEEcC---
Q 045431 154 VQD-PSYPAYVDSS-----------VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V--ARTDIIFFCS--- 213 (433)
Q Consensus 154 ~~~-p~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~i~l~~--- 213 (433)
+++ |.|.++...+ +..| .+++.++.+.++..+.+ +++ . +++++|++++
T Consensus 120 ~~~~~~y~~~~~~~g~~~~~~~~~l~~~G------------~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~ 187 (427)
T 3i16_A 120 SVCGEPYDTLHDVIGITENSNMGSLKEFG------------INYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTG 187 (427)
T ss_dssp ESSSSCCGGGHHHHTCSCCCSSCCTGGGT------------CEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCC
T ss_pred EeCCCccHHHHHHHhccccchHHHHHHcC------------CEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCC
Confidence 999 9998876433 3334 47778887654323222 221 2 6899999988
Q ss_pred -CCCccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc-cceeee
Q 045431 214 -PNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWT 289 (433)
Q Consensus 214 -p~nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l 289 (433)
|+||||. ..++++|+++|++ +|+++|+|++|+.+.+...+.. . +..++++|+||.+|.+| .+.||+
T Consensus 188 ~p~nptg~---i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~---~----gaDiv~~S~sK~lgg~g~~~gG~i 257 (427)
T 3i16_A 188 YGWRRALL---IEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD---V----GADLIAGSLIKNIGGGIAPTGGYL 257 (427)
T ss_dssp SSSSCCCC---HHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGG---G----TCSEEEEETTSGGGTTTCCSCEEE
T ss_pred CCCCCccc---HHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccc---c----CCeEEEecCcccCCCCCCceEEEE
Confidence 8888876 5779999999999 9999999999997654322221 1 23489999999997444 567999
Q ss_pred eccccccccCCcchhHHHHHHHhhccCC--CcH-HH-HHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeec
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTCFNG--ASN-IS-QAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYG 365 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 365 (433)
+++++++ +.+.........+ .++ +. ...+.+ +.+.+..+.++..+++..+.+.|+++|+.+.+
T Consensus 258 ~~~~~li--------~~l~~~~~~~~~g~~~~~~~~~a~~~l~-----gl~~~~~r~~~~~~~a~~la~~L~~~g~~V~p 324 (427)
T 3i16_A 258 AGTKDCI--------EKTSYRLTVPGIGGECGSTFGVVRSMYQ-----GLFLAPHISMEALKGAILCSRIMELAGFEVMP 324 (427)
T ss_dssp EECHHHH--------HHHHHHHSCTTTGGGCCCCTTCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEES
T ss_pred EECHHHH--------HHHHHhcccCccCccCCccHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCeecC
Confidence 9998885 5555432211111 111 11 111222 22345677888899999999999999988754
Q ss_pred CCCcc-----EEEEECC
Q 045431 366 GKNAP-----YVWVQFP 377 (433)
Q Consensus 366 ~~~g~-----~~~~~~~ 377 (433)
. .+. .+.+.+.
T Consensus 325 ~-~~~~~~~~i~~i~l~ 340 (427)
T 3i16_A 325 K-YDEKRSDIIQSIKFN 340 (427)
T ss_dssp C-TTSCCSSSCEEEECS
T ss_pred C-CCCCCccEEEEEEEC
Confidence 3 333 6777775
No 217
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.87 E-value=9.5e-21 Score=188.75 Aligned_cols=335 Identities=11% Similarity=0.063 Sum_probs=204.8
Q ss_pred CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhc-------C
Q 045431 76 PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVF-------G 147 (433)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~-------~ 147 (433)
..|..+...+.....+ .....|....+..++.+++.+++.+.++.+++++++|+|+++++.+ +..+. +
T Consensus 119 ~~~~~~~~~~l~~~~n----~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~ 194 (515)
T 2jis_A 119 LDPHALAGRIITESLN----TSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCK 194 (515)
T ss_dssp CCHHHHHHHHHHHHHC----CCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHH
T ss_pred CCHHHHHHHHHHHHhc----cCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHh
Confidence 3455555433332221 3334666666767777777777766557778899999999999775 43331 2
Q ss_pred -CCC------EEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C------CCccEEEE
Q 045431 148 -SNV------TMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V------ARTDIIFF 211 (433)
Q Consensus 148 -~gd------~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~------~~~~~i~l 211 (433)
+|+ .|++.+++|+++...++.+|. +. .+++.+|.+.+..++.+ +++ . .++++|++
T Consensus 195 ~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~-g~--------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~ 265 (515)
T 2jis_A 195 QRGLRTLPPLALFTSKECHYSIQKGAAFLGL-GT--------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSA 265 (515)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTS-CG--------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hcCccccCCeEEEECCCccHHHHHHHHHcCC-CC--------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 576 899999999999988888873 11 16777887643322222 221 1 14788999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeec
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVI 291 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~ 291 (433)
++|+||||.+.+ +++|.++|++||+++++|++|+.+........ ..+.+..+..+++.|++|+++ .+.++|++++
T Consensus 266 ~~~~n~tG~i~~---l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~-~~~~g~~~aD~v~~s~hK~l~-~p~g~G~l~~ 340 (515)
T 2jis_A 266 TSGTTVLGAFDP---LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHR-HLLDGIQRADSVAWNPHKLLA-AGLQCSALLL 340 (515)
T ss_dssp EBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG-GGGTTGGGCSEEEECTTSTTC-CCSCCEEEEE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCCeEEEehhhhhHHHhChhhH-hhcCCCccCCEEEECcccccC-CCCCeeEEEE
Confidence 999999999887 78999999999999999999997655422110 012221123478889999987 4567999999
Q ss_pred ccc--ccccCCcchhHHHHHHHh-------h------ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHH
Q 045431 292 PKE--LLFSDGFPVAKDFNRIVC-------T------CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETF 356 (433)
Q Consensus 292 ~~~--~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 356 (433)
+++ ++..........+..... . .......+.+.++.+++. ...++++.++..++++++.+.|
T Consensus 341 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg---~~g~~~~~~~~~~~a~~l~~~L 417 (515)
T 2jis_A 341 QDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG---DQGLERRIDQAFVLARYLVEEM 417 (515)
T ss_dssp SCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 877 431000000000000000 0 000112344444444443 3456788888999999999999
Q ss_pred hhc-CCeeecCC-CccEEEEECCC---C--ChH-----------HHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---
Q 045431 357 NSL-GFKVYGGK-NAPYVWVQFPG---R--SSW-----------DVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--- 415 (433)
Q Consensus 357 ~~~-g~~~~~~~-~g~~~~~~~~~---~--~~~-----------~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--- 415 (433)
++. |+++..+. .+.+.+...+. . +.. .+...+.++ |+.+...... ....+++|+++.
T Consensus 418 ~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~-~~~~~~lRis~~~~~ 495 (515)
T 2jis_A 418 KKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPH-GTRGNFFRVVVANSA 495 (515)
T ss_dssp HTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEE-TTEEEEEEEECCCTT
T ss_pred hcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEE-CCceEEEEEEeCCCC
Confidence 987 88887543 34433333331 0 111 133444444 7544211000 112468999984
Q ss_pred cChhHHHHHHHHHHHhhC
Q 045431 416 GHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 416 ~~~~~l~~~l~~l~~~l~ 433 (433)
.+++++++++++|+++++
T Consensus 496 ~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 496 LTCADMDFLLNELERLGQ 513 (515)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 689999999999998753
No 218
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.87 E-value=1.1e-20 Score=181.51 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHhhc--ccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE--cCChHHHHHH-HHHhcCCCCEEE
Q 045431 79 EVITSALAKRSYAL--STQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV--SDGAKCDISR-LQIVFGSNVTMA 153 (433)
Q Consensus 79 ~~~~~a~~~~~~~~--~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~--~~G~~~al~~-l~~l~~~gd~Vl 153 (433)
..+++++.++.... ........|+ ..|..+|++.+|+++ +.+. .+++ ++|+++++.+ +.++++|||+|+
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~-~~~~~~Le~~lA~l~----g~e~-alv~p~~~sGt~Ai~~al~all~~GD~Vl 105 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYD-DEGRDTLERVYATVF----KTEA-ALVRPQIISGTHAISTVLFGILRPDDELL 105 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTT-CHHHHHHHHHHHHHH----TCSE-EEEETTSCSHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCC-hhHHHHHHHHHHHHh----CCCc-EEEECCCccHHHHHHHHHHHhcCCCCEEE
Confidence 45667777654211 1112233564 346788999999987 5532 3332 7888888886 688899999999
Q ss_pred EeC-CCChhhhhhH----------HHhCCcccccccccccceEEEeecCccCCcccC-CCC--CCCccEEEEcC----CC
Q 045431 154 VQD-PSYPAYVDSS----------VIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--VARTDIIFFCS----PN 215 (433)
Q Consensus 154 ~~~-p~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~~----p~ 215 (433)
+++ |.|..+...+ +..| .+++.++.+.++..+.+ +++ .+++++|++++ |+
T Consensus 106 ~~~~~~y~~~~~~~~~~g~~~~~l~~~G------------~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~ 173 (409)
T 3jzl_A 106 YITGQPYDTLEEIVGIRKQGQGSLKDFH------------IGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYAD 173 (409)
T ss_dssp ECSSSCCTTHHHHHTSSSSSSSCTGGGT------------CEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSS
T ss_pred EeCCCCcHhHHHHHhcccchhhHHHHcC------------CEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCC
Confidence 998 9999887433 3344 47778887654323222 221 35789999998 99
Q ss_pred CccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc-cceeeeecc
Q 045431 216 NPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGWTVIP 292 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~ 292 (433)
||||.+ .++++|+++|++ ||+++|+|++|+.+.+...+.. . +..++++|+||.+|.+| .+.||++++
T Consensus 174 nptg~v---~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~---~----g~Div~~S~sK~lgg~~~~~GG~v~~~ 243 (409)
T 3jzl_A 174 RPSFTI---EKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPE---V----GADIIAGSLIKNPGGGLAKTGGYIAGK 243 (409)
T ss_dssp SCCCCH---HHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGG---G----TCSEEEEETTSGGGTTTCSSCEEEEEC
T ss_pred CCcCcc---ccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccc---c----CCeEEEECccccCCccCCceEEEEEeC
Confidence 999875 569999999999 9999999999997654322221 1 23489999999998444 346999999
Q ss_pred ccccccCCcchhHHHHHHHhh----ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCCC
Q 045431 293 KELLFSDGFPVAKDFNRIVCT----CFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGKN 368 (433)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 368 (433)
++++ +.+...... ...++....+.++.+.+ +....++++..+++..+.+.|+++|+++.+. .
T Consensus 244 ~~li--------~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl-----~~~~~r~~~~~~~a~~la~~L~~~g~~v~p~-~ 309 (409)
T 3jzl_A 244 EALV--------DLCGYRLTTPGIGREAGASLYSLLEMYQGF-----FLAPHVTAQAIKGARFTAAMLAEFGVEADPV-W 309 (409)
T ss_dssp HHHH--------HHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCEEESC-T
T ss_pred HHHH--------HHHHHHhccccccccccccHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHhCCCcccCC-C
Confidence 8875 555443211 11222221122233322 3346677788899999999999999887543 2
Q ss_pred cc-----EEEEECC
Q 045431 369 AP-----YVWVQFP 377 (433)
Q Consensus 369 g~-----~~~~~~~ 377 (433)
+. .+.+.+.
T Consensus 310 ~~~~~~~i~~i~l~ 323 (409)
T 3jzl_A 310 DAPRTDLIQSVSFH 323 (409)
T ss_dssp TSCCSSSCCEEECS
T ss_pred CCCCccEEEEEEeC
Confidence 22 5667776
No 219
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.87 E-value=9.1e-21 Score=186.64 Aligned_cols=325 Identities=11% Similarity=-0.005 Sum_probs=211.6
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCC---------cEEEcCChHHHHHH-HHHhc-
Q 045431 78 PEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEG---------DIFVSDGAKCDISR-LQIVF- 146 (433)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~---------~i~~~~G~~~al~~-l~~l~- 146 (433)
|..+.+.+...+. .....|....+..+|++++++|+.+.++.+.+ ..++|+|+++++.+ +....
T Consensus 87 ~~~~~~~l~~~~n-----~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~ 161 (475)
T 3k40_A 87 PAIVADMLSGAIA-----CIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKA 161 (475)
T ss_dssp HHHHHHHHHHHHC-----CCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----ccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHH
Confidence 3444455555543 34457777888999999999999886666542 57888888888654 43321
Q ss_pred ------------------CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCCC----
Q 045431 147 ------------------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LSTV---- 203 (433)
Q Consensus 147 ------------------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---- 203 (433)
.+++.|++++++|.++...+...| .+++.++++.++ ++.+ +++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g------------~~~~~v~~d~~~-~d~~~L~~~i~~~ 228 (475)
T 3k40_A 162 KKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGG------------VKLRSVQSENHR-MRGAALEKAIEQD 228 (475)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHT------------CEEEEECCBTTB-CCHHHHHHHHHHH
T ss_pred HHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcC------------CceEEEECCCCC-cCHHHHHHHHHHH
Confidence 135789999999999999988888 488889887543 3332 2210
Q ss_pred ----CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCcccccCCCCcceEEEeccccc
Q 045431 204 ----ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPGAKEVAIETSSFSKY 278 (433)
Q Consensus 204 ----~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~vi~i~S~sK~ 278 (433)
..+.+|+++.++|+||.+-+ +++|+++|++||+++++|++|+...... ..... +.+......+..|++|+
T Consensus 229 ~~~~~~~~~v~~~~~~t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~--~~gi~~~Ds~~~~~hK~ 303 (475)
T 3k40_A 229 VAEGLIPFYAVVTLGTTNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHL--MKGIESADSFNFNPHKW 303 (475)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHH
T ss_pred HHCCCccEEEEEEecCCCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHH--hcCcccCCEEEECchhc
Confidence 12567777899999999866 8899999999999999999998643321 11111 11111123667899998
Q ss_pred ccccccceeeeeccccccccCCcchhHH-HHHH--------Hhh---ccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHH
Q 045431 279 AGFTGVRLGWTVIPKELLFSDGFPVAKD-FNRI--------VCT---CFNGASNISQAGGLACLSPEGFKAVHEVIGFYK 346 (433)
Q Consensus 279 ~~~~G~r~G~l~~~~~~~~~~~~~~~~~-~~~~--------~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 346 (433)
++ ....+|++++++............. +... ... .......+.+.+++..+ +.+.++++.++..
T Consensus 304 l~-~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~---g~~g~~~~~~~~~ 379 (475)
T 3k40_A 304 ML-VNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLY---GVENLQAHIRRHC 379 (475)
T ss_dssp SS-CCSSCEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cC-CCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 86 5566888887765421100000000 0000 000 00001234444444444 2345688889999
Q ss_pred HHHHHHHHHHhhc-CCeeecCCCccEEEEECCCC--ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cChhH
Q 045431 347 ENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGR--SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHRGN 420 (433)
Q Consensus 347 ~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~ 420 (433)
++++++.+.|++. |+++..+.....+++++++. ...++..++.++.++.+.|+.. .+..++|+++. .++++
T Consensus 380 ~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~g~~~lR~~~~~~~tt~~d 456 (475)
T 3k40_A 380 NFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKI---KDVYFLRMAICSRFTQSED 456 (475)
T ss_dssp HHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEE---TTEEEEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEE---CCEEEEEEEeCCCCCCHHH
Confidence 9999999999998 89988766677788888642 2456777777764445555432 23578999964 37899
Q ss_pred HHHHHHHHHHhh
Q 045431 421 VLEACKRFKHLY 432 (433)
Q Consensus 421 l~~~l~~l~~~l 432 (433)
+++++++|++++
T Consensus 457 i~~~~~~i~~~~ 468 (475)
T 3k40_A 457 MEYSWKEVSAAA 468 (475)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 220
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.86 E-value=1.8e-19 Score=173.35 Aligned_cols=309 Identities=12% Similarity=0.056 Sum_probs=196.8
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQ 143 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~ 143 (433)
+|++..+.+ ..++.+.+++.+.+... .|.+..+..++++++++++ +.+ ++++++++++++.+ +.
T Consensus 3 ~~~~~~~~~--~~~~~~~~a~~~~~~~~-------~~~~~~~~~~l~~~la~~~----~~~--~~i~~~sGt~a~~~al~ 67 (390)
T 3b8x_A 3 MINYPLASS--TWDDLEYKAIQSVLDSK-------MFTMGEYVKQYETQFAKTF----GSK--YAVMVSSGSTANLLMIA 67 (390)
T ss_dssp --CBCSCCC--CCCHHHHHHHHHHHHHT-------CCSSCHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHH
T ss_pred ceeccCCCC--CCCHHHHHHHHHHHHcC-------CCCCChHHHHHHHHHHHHH----CCC--cEEEECCHHHHHHHHHH
Confidence 455544443 46788888998888641 3445678899999999998 554 45555555678876 66
Q ss_pred Hh-------cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCC---C--CCCccEEEE
Q 045431 144 IV-------FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLS---T--VARTDIIFF 211 (433)
Q Consensus 144 ~l-------~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~l 211 (433)
.+ +++||+|+++.|+|+++...+...| .+++.++.+++ .+..+++ + .+++++|++
T Consensus 68 ~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~ 134 (390)
T 3b8x_A 68 ALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYG------------LRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILT 134 (390)
T ss_dssp HTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEE
T ss_pred HHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcC------------CEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEE
Confidence 66 7899999999999999999988888 47888888654 1222322 1 257888888
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEec--ccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSS--FSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S--~sK~~~~~G~r~G~l 289 (433)
+| ++|...+ +++|.++|++||+++|+|++|+...... . ..+....+ +...| .+|.++ +| +.|++
T Consensus 135 ~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~-~---~~~g~~~~--~~~~s~~~~k~~~-~g-~gG~~ 200 (390)
T 3b8x_A 135 VN---LLGNPNN---FDEINKIIGGRDIILLEDNCESMGATFN-N---KCAGTFGL--MGTFSSFYSNHIA-TM-EGGCI 200 (390)
T ss_dssp EC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTCTTCEET-T---EETTSSSS--EEEEECCTTSSSC-SS-SCEEE
T ss_pred EC---CccChhh---HHHHHHHHHHcCCEEEEECcCcccCEEC-C---cccccccc--eEEEEccCCCCCc-cC-CceEE
Confidence 74 5566544 8899999999999999999999432211 1 11111111 22222 245553 33 34899
Q ss_pred eccccccccCCcchhHHHHHHHhhc-------------------------------cCCCcHHHHHHHHHhcCcCChhHH
Q 045431 290 VIPKELLFSDGFPVAKDFNRIVCTC-------------------------------FNGASNISQAGGLACLSPEGFKAV 338 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~q~~~~~~l~~~~~~~~ 338 (433)
++++..+ .+.+....... ....+.+...++...+ +++
T Consensus 201 ~~~~~~l-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l 268 (390)
T 3b8x_A 201 VTDDEEI-------YHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-----KKL 268 (390)
T ss_dssp EESCHHH-------HHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-----HHH
T ss_pred EeCCHHH-------HHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH-----HHH
Confidence 8886332 13333222110 0114455555444433 456
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CCeeecCC--Ccc-EEEEECC---CCChHHHHHHHHHcCCeEecCC---CCCCC-C-C
Q 045431 339 HEVIGFYKENTDIIVETFNSL-GFKVYGGK--NAP-YVWVQFP---GRSSWDVFSEILEKTHVVTTPG---SGFGP-G-G 406 (433)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~-~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g---~~f~~-~-~ 406 (433)
++..++.+++++++.+.|+++ |+.+..+. .++ .+++.++ +.+..++...|. ++||.+.+. ..+.. . .
T Consensus 269 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~ 347 (390)
T 3b8x_A 269 PRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLN-SAGIECRPIVTGNFLKNTDVL 347 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHH-HTTBCCBCSTTSSGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHH-HCCCCeeeecCCchhhcchhh
Confidence 778888889999999999987 77765432 233 3666766 345666666665 459999873 22111 0 0
Q ss_pred ------------------CCeEEEee--ccChhHHHHHHHHH
Q 045431 407 ------------------EGFIRVSA--FGHRGNVLEACKRF 428 (433)
Q Consensus 407 ------------------~~~iRi~~--~~~~~~l~~~l~~l 428 (433)
.+.+||++ ..+++|++..++.|
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 348 KYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp TTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 13599996 45899999998876
No 221
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.6e-20 Score=185.45 Aligned_cols=327 Identities=13% Similarity=0.078 Sum_probs=212.7
Q ss_pred ChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCC----------CcEEEcCChHHHHHH-HHHh
Q 045431 77 IPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEE----------GDIFVSDGAKCDISR-LQIV 145 (433)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~----------~~i~~~~G~~~al~~-l~~l 145 (433)
.|..+.+.+..++. .....|....+..++++++++|+.+.++.+. ...++|+|+++++.+ +...
T Consensus 91 ~~~~~~~~~~~~~n-----~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~a 165 (481)
T 4e1o_A 91 WPSLLGDMLADAIN-----CLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAA 165 (481)
T ss_dssp HHHHHHHHHHHHHC-----CCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----cccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHH
Confidence 34455556666554 4456787788999999999999988555543 256888888887654 4332
Q ss_pred c-------------------CCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C
Q 045431 146 F-------------------GSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V 203 (433)
Q Consensus 146 ~-------------------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~ 203 (433)
. .+++.|++++++|.++...+...| .+++.++.+.+..++.+ +++ .
T Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g------------~~~~~v~~~~~~~~d~~~Le~~i~ 233 (481)
T 4e1o_A 166 RKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISL------------VKMKFLPVDDNFSLRGEALQKAIE 233 (481)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHT------------CEEEEECCCTTSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCC------------CceEEEEcCCCCcCCHHHHHHHHH
Confidence 1 267899999999999998888777 47888888644333322 221 0
Q ss_pred ------CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCcccccCCCCcceEEEeccc
Q 045431 204 ------ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDD-NPRSIFEIPGAKEVAIETSSFS 276 (433)
Q Consensus 204 ------~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~vi~i~S~s 276 (433)
..+.+|+.+.++|+||.+-+ +++|+++|++||+++++|++|+...... ..... ..+......+..+++
T Consensus 234 ~~~~~g~~~~~vv~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~--~~gi~~aDsi~~~~h 308 (481)
T 4e1o_A 234 EDKQRGLVPVFVCATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGF--LKGIEYADSFTFNPS 308 (481)
T ss_dssp HHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHH
T ss_pred HHHhCCCCcEEEEEecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHH--hcCcccCCEEEEChH
Confidence 12566777899999998755 8899999999999999999998653322 11111 111111135667999
Q ss_pred ccccccccceeeeeccccccccCCcchhHHH------------HHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHH
Q 045431 277 KYAGFTGVRLGWTVIPKELLFSDGFPVAKDF------------NRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344 (433)
Q Consensus 277 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 344 (433)
|+++ ....+|++++++.............+ .............+.+.+++..+ +.+.++++.++
T Consensus 309 K~l~-~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~---g~~g~~~~~~~ 384 (481)
T 4e1o_A 309 KWMM-VHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF---GVKNLQAHVRH 384 (481)
T ss_dssp HHSS-CCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhcC-CCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHh---HHHHHHHHHHH
Confidence 9987 44557877776543210000000000 00000001112345555555554 23557888899
Q ss_pred HHHHHHHHHHHHhhc-CCeeecCCCccEEEEECCCC--ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec---cCh
Q 045431 345 YKENTDIIVETFNSL-GFKVYGGKNAPYVWVQFPGR--SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF---GHR 418 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~ 418 (433)
..++++++.+.|++. |+++..+....++++++++. ...++...+.++..+.+.|+.. .+..++|+++. .++
T Consensus 385 ~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~g~~~lR~~~~~~~tt~ 461 (481)
T 4e1o_A 385 GTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATI---QDKLIIRFTVTSQFTTR 461 (481)
T ss_dssp HHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEE---TTEEEEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEE---CCEEEEEEEeCCCCCCH
Confidence 999999999999998 89987766778888888642 2456777776663355554332 23568999964 368
Q ss_pred hHHHHHHHHHHHhh
Q 045431 419 GNVLEACKRFKHLY 432 (433)
Q Consensus 419 ~~l~~~l~~l~~~l 432 (433)
+++++++++|++++
T Consensus 462 ~di~~~~~~i~~~~ 475 (481)
T 4e1o_A 462 DDILRDWNLIRDAA 475 (481)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 222
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.86 E-value=3.3e-21 Score=186.78 Aligned_cols=256 Identities=17% Similarity=0.154 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHhccCCCCCC--cEEEcCChHHHHHH-HHHhcCCCCEEEEeC-CCChhhhhhHHHhCC-cccccccccc
Q 045431 107 EKPLRAAIASTFYKDLGIEEG--DIFVSDGAKCDISR-LQIVFGSNVTMAVQD-PSYPAYVDSSVIMGQ-TGEFQKDAEK 181 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~--~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~-p~~~~~~~~~~~~g~-~~~~~~~~~~ 181 (433)
..++++.+++++ +.+.. +|++++ +++++.+ +.+++++||+|++++ |.|..+...+...|. +..+...|
T Consensus 67 ~~~l~~~la~~~----g~~~~~~~i~~~s-Gt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G-- 139 (431)
T 3ht4_A 67 RDTLEKVYADVF----GAEAGLVRPQIIS-GTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYN-- 139 (431)
T ss_dssp HHHHHHHHHHHT----TCSEECCBTTSCS-HHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGT--
T ss_pred HHHHHHHHHHHh----CCCcccccceeeC-HHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcC--
Confidence 344555555554 55432 344665 4788876 677899999999998 999988755532110 00011111
Q ss_pred cceEEEeecCccCCcccC-CCC--CCCccEEEEc-CCCCccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCC
Q 045431 182 YGKIEYMRCTAENGFFPD-LST--VARTDIIFFC-SPNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDN 255 (433)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~l~-~p~nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~ 255 (433)
.+++.++.+.++..+.+ +++ .+++++|+++ +||||+|..++.+++++|+++|++ +|+++|+|++|+.+.+...
T Consensus 140 -~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~ 218 (431)
T 3ht4_A 140 -IGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE 218 (431)
T ss_dssp -CEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC
T ss_pred -CEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC
Confidence 47788887654322222 221 3589999999 699999999999999999999999 9999999999998765433
Q ss_pred CCcccccCCCCcceEEEecccccccc-cccceeeeeccccccccCCcchhHHHHHHHhhcc----CCCcHHHHHHHHHhc
Q 045431 256 PRSIFEIPGAKEVAIETSSFSKYAGF-TGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCF----NGASNISQAGGLACL 330 (433)
Q Consensus 256 ~~~~~~~~~~~~~vi~i~S~sK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~q~~~~~~l 330 (433)
+.. . +..++++|+||.+|. .+...||++++++++ +.+........ .+++...+.++.+.+
T Consensus 219 ~~~---~----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li--------~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l 283 (431)
T 3ht4_A 219 PCH---V----GADLMAGSLIKNPGGGIVKTGGYIVGKEQYV--------EACAYRLTSPGIGAEAGASLYSLQEMYQGF 283 (431)
T ss_dssp GGG---T----TCSEEEEETTSGGGTTTCSSCEEEEECHHHH--------HHHHHHHSCTTTTTSCSCCCSCSHHHHHHH
T ss_pred ccc---c----CCeEEEcCccccCCCCCCCceEEEEecHHHH--------HHHHHHhccCCcccccCccHHHHHHHHhHh
Confidence 322 1 123889999999762 113449999998875 55544332211 111111122222222
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeeecCC----CccEEEEECCCC-ChHHHHHHHHH
Q 045431 331 SPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVYGGK----NAPYVWVQFPGR-SSWDVFSEILE 390 (433)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~~~~~~~~~~-~~~~~~~~l~~ 390 (433)
+.+..+.++..++++.+.+.|+++|+.+.+.. .+..+.+.++.. ...++.+.+..
T Consensus 284 -----~~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 284 -----FLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQY 343 (431)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCHHHHHHHHHHHHh
Confidence 23466677888999999999999988774431 223566777632 22344444433
No 223
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.6e-19 Score=170.87 Aligned_cols=319 Identities=12% Similarity=0.099 Sum_probs=205.6
Q ss_pred CCCChHHHHHHHHHHHhhcccCCCCCCC--CC-----CCCCHHHHHHHHHHHhccCCCCC-CcEEE-cCChHHHHHH-HH
Q 045431 74 TEPIPEVITSALAKRSYALSTQEGYSGY--GA-----EQGEKPLRAAIASTFYKDLGIEE-GDIFV-SDGAKCDISR-LQ 143 (433)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~Y--~~-----~~g~~~lr~~la~~l~~~~~~~~-~~i~~-~~G~~~al~~-l~ 143 (433)
..+.|+.+++++.+.+.+... .+.+.+ +. ..-..+.|+.+++++ ++++ ++|++ |+|+++++++ +.
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~-n~~s~~~~~hr~~~~~~~~~~ar~~la~ll----~~~~~~evif~t~~~T~a~n~a~~ 95 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKG-VGISVLEMSHRSSDFAKIINNTENLVRELL----AVPDNYKVIFLQGGGCGQFSAVPL 95 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGG-SSSCTTTCCTTSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhccc-CCccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCCeEEEEcCchHHHHHHHHH
Confidence 367899999999998865432 222111 11 122355667777776 7754 57888 6899999997 67
Q ss_pred HhcCC--CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccC-CC--CCCCccEEEEcCCCCcc
Q 045431 144 IVFGS--NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LS--TVARTDIIFFCSPNNPT 218 (433)
Q Consensus 144 ~l~~~--gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~i~l~~p~nPt 218 (433)
.++.+ ||+|++..-++.+. .+.+.+...|. .++.++.+.+.+..++ ++ ..+++++|.+++..|.|
T Consensus 96 ~l~~~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~---------~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~t 165 (377)
T 3e77_A 96 NLIGLKAGRCADYVVTGAWSA-KAAEEAKKFGT---------INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVH 165 (377)
T ss_dssp HHGGGSTTCEEEECCCSHHHH-HHHHHHTTTSE---------EEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTT
T ss_pred hccCCCCCCeEEEEECCHHHH-HHHHHHHHhCC---------ceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCch
Confidence 78755 99998877766653 34444443332 4555666543333333 11 23688999988888999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
|++.+. +|+++|+++++|.+++... .|..+..+ + +++.|..|++|.+| +|+++++++++..
T Consensus 166 G~~~pi--------i~~~~~~~~~vD~~q~~g~---~~id~~~~----~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~ 226 (377)
T 3e77_A 166 GVEFDF--------IPDVKGAVLVCDMSSNFLS---KPVDVSKF----G--VIFAGAQKNVGSAG--VTVVIVRDDLLGF 226 (377)
T ss_dssp TEECSS--------CCCCTTCCEEEECTTTTTS---SCCCGGGC----S--EEEEEGGGTTSCTT--CEEEEEETTSCSC
T ss_pred heEchh--------hhccCCCEEEEEcccccCC---CCCchhhc----C--EEEEecccccCCCc--cEEEEEcHHHHhh
Confidence 999985 3668999999999988421 14444433 2 46678899999778 7999999888633
Q ss_pred CC---cchhHHHHHHH--hhccCCCcHHHHHHHHHhcCcCChh-HHHHHHHHHHHHHHHHHHHHhhc-CCeeecC----C
Q 045431 299 DG---FPVAKDFNRIV--CTCFNGASNISQAGGLACLSPEGFK-AVHEVIGFYKENTDIIVETFNSL-GFKVYGG----K 367 (433)
Q Consensus 299 ~~---~~~~~~~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~----~ 367 (433)
.. +.+.+ +.... .....+++.....++.++++-.... .++.+.++.++..+++.+.|+++ |+.+.+. .
T Consensus 227 ~~~~~p~~~~-~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~r 305 (377)
T 3e77_A 227 ALRECPSVLE-YKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNR 305 (377)
T ss_dssp CCTTSCGGGC-HHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGB
T ss_pred ccCCCCchhh-HHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHc
Confidence 21 11111 11111 1122334444444444444311112 46888899999999999999998 7775321 2
Q ss_pred CccEEEEECCCCCh-----HHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 368 NAPYVWVQFPGRSS-----WDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 368 ~g~~~~~~~~~~~~-----~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
.+..+.+.+++... ..+...+. ++||.+.+|.. ..+.+|+|++ +++++++.+++.|++++
T Consensus 306 s~~ivsf~~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~----~~g~iRiS~~~~~t~edId~l~~al~~~~ 372 (377)
T 3e77_A 306 SKMNIPFRIGNAKGDDALEKRFLDKAL-ELNMLSLKGHR----SVGGIRASLYNAVTIEDVQKLAAFMKKFL 372 (377)
T ss_dssp CSSEEEEEESSTTCCHHHHHHHHHHHH-HTTEESCBCCT----TTCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCchhHHHHHHHHHH-HCCcEEeCCCC----cCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34457788875432 24455544 56999988863 2356999974 48999999999999875
No 224
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.85 E-value=3.1e-20 Score=179.01 Aligned_cols=255 Identities=15% Similarity=0.103 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHhhcccC--CCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE---cCChHHHHHH-HHHhcCCCCEE
Q 045431 79 EVITSALAKRSYALSTQ--EGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV---SDGAKCDISR-LQIVFGSNVTM 152 (433)
Q Consensus 79 ~~~~~a~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~---~~G~~~al~~-l~~l~~~gd~V 152 (433)
+.+++++.+........ .....|+. .|..+|++.+|+++ +.+ ..++ ++|+++++.+ +.++++|||+|
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~-~g~~~Le~~lA~l~----g~e--~alv~p~~~sGt~A~~~al~all~pGD~V 119 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYND-IGRDSLDRVYANIF----NTE--SAFVRPHFVNGTHAIGAALFGNLRPNDTM 119 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTC-HHHHHHHHHHHHHH----TCS--EEEEETTCCSHHHHHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCc-hhHHHHHHHHHHHh----CCC--ceEEeCCCCcHHHHHHHHHHHhcCCCCEE
Confidence 56677776653321111 12234533 46788999999987 554 3344 6777788876 68899999999
Q ss_pred EEeC-CCChhhhhh-----------HHHhCCcccccccccccceEEEeecCccCCcccC-CCC--C--CCccEEEEcC--
Q 045431 153 AVQD-PSYPAYVDS-----------SVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPD-LST--V--ARTDIIFFCS-- 213 (433)
Q Consensus 153 l~~~-p~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~i~l~~-- 213 (433)
++++ |.|.++... ++..| .+++.++. +++..+.+ +++ . +++++|++++
T Consensus 120 l~~~~~~y~~~~~~~g~~~~~~~~~l~~~G------------~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~ 186 (427)
T 3hvy_A 120 MSICGMPYDTLHDIIGMDDSKKVGSLREYG------------VKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRST 186 (427)
T ss_dssp EECSSSCCGGGHHHHTCCTTCCSCCTGGGT------------CEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSC
T ss_pred EEeCCCCchhHHHHhccccchhhhHHHHcC------------CEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCC
Confidence 9999 999887633 33344 36777776 22222221 221 2 6899999998
Q ss_pred --CCCccccCCCHHHHHHHHHHHHH--cCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccc-cceee
Q 045431 214 --PNNPTGAAATREQLTRLVQFAKD--NGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTG-VRLGW 288 (433)
Q Consensus 214 --p~nPtG~~~~~~~~~~i~~~a~~--~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G-~r~G~ 288 (433)
|+||||. ..++++|+++|++ +|+++|+|++|+.+.+...+.. . +..++++|+||++|.+| .+.||
T Consensus 187 gyp~nptg~---v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~---~----gaDiv~~S~sK~lgg~g~~~GG~ 256 (427)
T 3hvy_A 187 GYGWRKSLR---IAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTD---V----GADIIAGSLIKNIGGGIATTGGY 256 (427)
T ss_dssp CSSSSCCCC---HHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGG---G----TCSEEEEETTSGGGTTTCCSCEE
T ss_pred CCCCCcccc---HHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcc---c----CCeEEEECCcccccccccceEEE
Confidence 8888876 5679999999999 8999999999987654322221 1 23489999999997433 45699
Q ss_pred eeccccccccCCcchhHHHHHHHhhccC----CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee
Q 045431 289 TVIPKELLFSDGFPVAKDFNRIVCTCFN----GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY 364 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 364 (433)
++++++++ +.+......... +++......+... .+....+.++..+++..+.+.|+++|+.+.
T Consensus 257 i~~~~~li--------~~l~~~~~~~~~g~~~~~~~~~a~~~~~g-----l~~~~~r~~~~~~~a~~la~~L~~~g~~V~ 323 (427)
T 3hvy_A 257 IAGKEEYV--------TQATFRVTVPGIGGECGSTFGVMRSLYEG-----LFMAPHVTIEAVKGAVFCARIMELAGFDVL 323 (427)
T ss_dssp EEECHHHH--------HHHHHHHSCTTTGGGCCCCTTCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEECHHHH--------HHHHHHhhcCCcccccCCCHHHHHHHHHh-----HhHHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 99998875 555543221111 1111112222222 233466777888999999999999998875
Q ss_pred cCCCcc-----EEEEECC
Q 045431 365 GGKNAP-----YVWVQFP 377 (433)
Q Consensus 365 ~~~~g~-----~~~~~~~ 377 (433)
+. .+. .+.+.+.
T Consensus 324 p~-~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 324 PK-YNDKRTDIIQAIKFN 340 (427)
T ss_dssp SC-TTSCCSSSEEEEECS
T ss_pred CC-CCCCCceEEEEEeCC
Confidence 43 332 6777775
No 225
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.85 E-value=1.6e-19 Score=184.52 Aligned_cols=297 Identities=12% Similarity=0.048 Sum_probs=186.0
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhh-HHHhCCccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDS-SVIMGQTGEFQKDAE 180 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~ 180 (433)
+..-..++++.+|+++ +.+ ..+++++|+++++.+ +.+++++||+|++++|+|.++... +...|.
T Consensus 171 ~~~~i~e~e~~lA~~~----gae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga--------- 236 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVY----NAD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGG--------- 236 (730)
T ss_dssp TBTHHHHHHHHHHHHT----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCC---------
T ss_pred ChHHHHHHHHHHHHHH----CCC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCC---------
Confidence 3445688999999987 665 458899999999886 688899999999999999998877 666673
Q ss_pred ccceEEEeecCccC-C----ccc-CC-----CC--CCC------c----cEEEEcCCCCccccCCCHHHHHHHHHHHHHc
Q 045431 181 KYGKIEYMRCTAEN-G----FFP-DL-----ST--VAR------T----DIIFFCSPNNPTGAAATREQLTRLVQFAKDN 237 (433)
Q Consensus 181 ~~~~~~~~~~~~~~-~----~~~-~~-----~~--~~~------~----~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~ 237 (433)
.++.++.+.+. + ++. ++ ++ .++ + +++++++| ||+|.+.+ +++|+++|++|
T Consensus 237 ---~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~ 309 (730)
T 1c4k_A 237 ---RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHL 309 (730)
T ss_dssp ---EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGG
T ss_pred ---EEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHc
Confidence 55555443210 0 111 12 11 112 3 88999999 58999987 78999999999
Q ss_pred CCEEEEecccccc-ccCCC-C--Cccc--ccCCCCcceEEEecccccccccccce-eeeeccccccccCCcch-hHHHHH
Q 045431 238 GSIIVYDSAYALY-ISDDN-P--RSIF--EIPGAKEVAIETSSFSKYAGFTGVRL-GWTVIPKELLFSDGFPV-AKDFNR 309 (433)
Q Consensus 238 ~~~li~De~~~~~-~~~~~-~--~~~~--~~~~~~~~vi~i~S~sK~~~~~G~r~-G~l~~~~~~~~~~~~~~-~~~~~~ 309 (433)
|+++|+|++|+.. .+.+. + .++. .+....++++++.|+||++ +|++. |+++++++.+......+ ...+..
T Consensus 310 g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~ 387 (730)
T 1c4k_A 310 CDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNN 387 (730)
T ss_dssp BSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHH
T ss_pred CCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHH
Confidence 9999999999753 33321 1 1121 1111134679999999986 56665 56656555431100000 122332
Q ss_pred HHh-hccCCCcHHHHHH---HHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh--cCCeeecCC----------------
Q 045431 310 IVC-TCFNGASNISQAG---GLACLSPEGFKAVHEVIGFYKENTDIIVETFNS--LGFKVYGGK---------------- 367 (433)
Q Consensus 310 ~~~-~~~~~~~~~~q~~---~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~~~~~~~---------------- 367 (433)
... .....++....++ +...+.. ..-+++.+++.++.+.+++.|++ .|+.+..+.
T Consensus 388 ~~~~~~stsp~~~~iaal~aA~~~l~~---~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~ 464 (730)
T 1c4k_A 388 SFNLFMSTSPFYPMYAALDVNAAMQEG---EAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMA 464 (730)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHT
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHhhhCCCeEEcccccccccccccccccccc
Confidence 221 1122233333332 3333332 12245567788888888889887 377765432
Q ss_pred ---------------------Cc-cE-----EEEECCC------------CChHHHHHHHHHcCCeEecCCCCCCCCCCC
Q 045431 368 ---------------------NA-PY-----VWVQFPG------------RSSWDVFSEILEKTHVVTTPGSGFGPGGEG 408 (433)
Q Consensus 368 ---------------------~g-~~-----~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~ 408 (433)
.+ ++ +.+..++ ....++...|.+ +||.+.+. +..
T Consensus 465 ~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e-~GI~v~~~------~~~ 537 (730)
T 1c4k_A 465 NNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRD-HGIIPEKS------DLN 537 (730)
T ss_dssp TCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHH-TTCCCSEE------CSS
T ss_pred ccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHH-CCcEEEEC------CCC
Confidence 11 11 4566642 345666666655 49988653 346
Q ss_pred eEEEee--ccChhHHHHHHHHHHHhh
Q 045431 409 FIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 409 ~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.+|+++ +.+.++++.++++|+++.
T Consensus 538 ~ir~~~s~g~t~e~i~~Ll~aL~~i~ 563 (730)
T 1c4k_A 538 SILFLMTPAETPAKMNNLITQLLQLQ 563 (730)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 788885 458899999999998764
No 226
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.84 E-value=7.1e-20 Score=188.76 Aligned_cols=288 Identities=13% Similarity=0.070 Sum_probs=180.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccc
Q 045431 105 QGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYG 183 (433)
Q Consensus 105 ~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 183 (433)
.-..++++.+++++ +.+ +.+++++|+++++.+ +.+++++||+|++++|+|.++...+...|.
T Consensus 205 g~v~~~ee~la~l~----G~d-~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~------------ 267 (755)
T 2vyc_A 205 GAFGESEKYAARVF----GAD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGA------------ 267 (755)
T ss_dssp HHHHHHHHHHHHHH----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCC------------
T ss_pred cHHHHHHHHHHHHh----CCC-ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCC------------
Confidence 34466777777776 654 568899999999886 688899999999999999999888888884
Q ss_pred eEEEeecCccC-C----c-----ccC-CCC----CCCc--------cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCE
Q 045431 184 KIEYMRCTAEN-G----F-----FPD-LST----VART--------DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSI 240 (433)
Q Consensus 184 ~~~~~~~~~~~-~----~-----~~~-~~~----~~~~--------~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~ 240 (433)
.++.++.+.+. + + +.+ +++ .+++ ++++++|| ||||.+.+ +++|+++|++||++
T Consensus 268 ~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~ 343 (755)
T 2vyc_A 268 KPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDR 343 (755)
T ss_dssp EEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSE
T ss_pred EEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCE
Confidence 66677664321 1 1 111 111 1233 48899998 79999987 78899999999999
Q ss_pred EEEecccccc-ccCCC---CCcccc--cCCCCcceEEEecccccccccccc-eeeeecccc--ccccCCcchhHHHHHHH
Q 045431 241 IVYDSAYALY-ISDDN---PRSIFE--IPGAKEVAIETSSFSKYAGFTGVR-LGWTVIPKE--LLFSDGFPVAKDFNRIV 311 (433)
Q Consensus 241 li~De~~~~~-~~~~~---~~~~~~--~~~~~~~vi~i~S~sK~~~~~G~r-~G~l~~~~~--~~~~~~~~~~~~~~~~~ 311 (433)
+++|++|+.. .+.+. ..++.. .+-..++++++.|+||++ +|++ .|+++++++ .+. ...+....
T Consensus 344 livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~------~~~~~~~~ 415 (755)
T 2vyc_A 344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAIN------FSRFNQAY 415 (755)
T ss_dssp EEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCC------HHHHHHHH
T ss_pred EEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccC------HHHHHHHH
Confidence 9999999853 23221 122211 121245778999999986 5666 567777766 221 12233222
Q ss_pred -hhccCCCcHHHH---HHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-C---------CeeecCC----------
Q 045431 312 -CTCFNGASNISQ---AGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-G---------FKVYGGK---------- 367 (433)
Q Consensus 312 -~~~~~~~~~~~q---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g---------~~~~~~~---------- 367 (433)
.....+++.+.. .++...+...+ .+.+.+++.++.+.+++.|+++ | +++..+.
T Consensus 416 ~~~~s~sp~~~~iaal~aA~~~l~~~g---g~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (755)
T 2vyc_A 416 MMHATTSPLYAICASNDVAVSMMDGNS---GLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKT 492 (755)
T ss_dssp HHTSCSSCCHHHHHHHHHHHHHHSTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCE
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccc
Confidence 111222343333 33344444321 2445555566666666666554 3 3332221
Q ss_pred ---------------------------------Cc------cEEEEECCC-----------CChHHHHHHHHHcCCeEec
Q 045431 368 ---------------------------------NA------PYVWVQFPG-----------RSSWDVFSEILEKTHVVTT 397 (433)
Q Consensus 368 ---------------------------------~g------~~~~~~~~~-----------~~~~~~~~~l~~~~gi~v~ 397 (433)
.+ .-+.+.+++ .+...+... |+++||.+.
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~-L~~~gI~~e 571 (755)
T 2vyc_A 493 YDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAW-LGRHGIVPT 571 (755)
T ss_dssp EEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHH-HHTTTCCCS
T ss_pred cccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHH-HHHCCCEEe
Confidence 12 234565652 233455555 456898875
Q ss_pred CCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHh
Q 045431 398 PGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHL 431 (433)
Q Consensus 398 ~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~ 431 (433)
.. +.+.+|+++ +.+.++++.++++|+++
T Consensus 572 ~~------~~~~v~~~~~~g~t~~~~~~l~~al~~~ 601 (755)
T 2vyc_A 572 RT------TDFQIMFLFSMGVTRGKWGTLVNTLCSF 601 (755)
T ss_dssp EE------CSSEEEEECCTTCCTTTTHHHHHHHHHH
T ss_pred ec------CCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 42 357799985 45899999999888876
No 227
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.80 E-value=6.4e-18 Score=159.33 Aligned_cols=321 Identities=16% Similarity=0.187 Sum_probs=199.3
Q ss_pred ceEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCCCC--CC-----CCCCHHHHHHHHHHHhccCCCC-CCcEEE-cCC
Q 045431 64 EVISLGIGDTTEPIPEVITSALAKRSYALSTQEGYSGY--GA-----EQGEKPLRAAIASTFYKDLGIE-EGDIFV-SDG 134 (433)
Q Consensus 64 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~Y--~~-----~~g~~~lr~~la~~l~~~~~~~-~~~i~~-~~G 134 (433)
.++.|+-|. -+.|+.+++++.+.+..... .+.+-| ++ ..-..+.|+.+++++ +++ +++|++ |+|
T Consensus 5 ~~~~f~pgp--t~~~~~V~~a~~~~~~~~~~-~~~s~~~~~hr~~~~~~~~~~~r~~la~ll----~~~~~~~v~f~t~~ 77 (361)
T 3m5u_A 5 RKINFSAGP--STLPLEILEQAQKELCDYQG-RGYSIMEISHRTKVFEEVHFGAQEKAKKLY----ELNDDYEVLFLQGG 77 (361)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSGGG-SSSCGGGSCSSSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSH
T ss_pred ceEeecCCC--CCCcHHHHHHHHHHHHhccc-CCceeeccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCc
Confidence 456777664 46899999999998764332 222111 11 123456667777776 775 458888 999
Q ss_pred hHHHHHH-HHHhcCCCCEEEEeCCCChhhh--hhHHHhCCcccccccccccceEEEeecCccCCc--ccCCCCCCCccEE
Q 045431 135 AKCDISR-LQIVFGSNVTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGF--FPDLSTVARTDII 209 (433)
Q Consensus 135 ~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i 209 (433)
+++++++ +..++ +||++++..-+..+.. ..++..| .++..++.+.++.+ .++.+-.+++++|
T Consensus 78 ~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G------------~~v~~~~~~~~g~~~~~~~~~l~~~t~lv 144 (361)
T 3m5u_A 78 ASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILG------------VNVKTVASSEESNFDHIPRVEFSDNADYA 144 (361)
T ss_dssp HHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTT------------CCEEEEEECTTTTSCSCCCCCCCTTSSEE
T ss_pred HHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcC------------CceEEEecccCcCCCcCChhhcCCCCCEE
Confidence 9999997 67777 8887633222232322 2223344 36777877655421 2221223578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeee
Q 045431 210 FFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 210 ~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
.+++.+|.||+..+. | ++ +|+++++|.+++... .+..+..+ .+++.|.+|++|.+| +|++
T Consensus 145 ~~~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~q~~g~---~~id~~~~------d~~~~s~~K~~gp~G--~g~l 204 (361)
T 3m5u_A 145 YICSNNTIYGTQYQN-----Y---PK-TKTPLIVDASSDFFS---RKVDFSNI------ALFYGGVQKNAGISG--LSCI 204 (361)
T ss_dssp EEESEETTTTEECSS-----C---CC-CSSCEEEECGGGTTS---SCCCCTTE------EEEEEETTTTSSCTT--CEEE
T ss_pred EEeCCCCCcceeCCc-----c---cc-cCCEEEEEcccccCC---CCCCcccC------CEEEEechhccCCCc--cEEE
Confidence 888888999998762 2 33 499999999988321 13333222 277789999999777 7999
Q ss_pred eccccccccC----CcchhHHHHHH-H-hhccCCCcHHHHHHHHHhc---CcCChhHHHHHHHHHHHHHHHHHHHHhhcC
Q 045431 290 VIPKELLFSD----GFPVAKDFNRI-V-CTCFNGASNISQAGGLACL---SPEGFKAVHEVIGFYKENTDIIVETFNSLG 360 (433)
Q Consensus 290 ~~~~~~~~~~----~~~~~~~~~~~-~-~~~~~~~~~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 360 (433)
+++++++... .+.... +... . .....+++.....++.+++ ...+ .++++.++.++.++++.+.|++++
T Consensus 205 ~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~g--G~~~i~~~~~~l~~~l~~~L~~~~ 281 (361)
T 3m5u_A 205 FIRKDMLERSKNKQIPSMLN-YLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQG--GLDKVHEKNSQKATMLYECIDLSN 281 (361)
T ss_dssp EEEHHHHHHHHTCCCCGGGC-HHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHTST
T ss_pred EEcHHHHhhhcCCCCCceee-hHHHhhcCCCCCCccHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9988775210 111111 1111 1 1122334444444333443 3330 258888899999999999999985
Q ss_pred -C-eeecC---CCccEEEEECCC-CC-hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEee--ccChhHHHHHHHHHHHh
Q 045431 361 -F-KVYGG---KNAPYVWVQFPG-RS-SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSA--FGHRGNVLEACKRFKHL 431 (433)
Q Consensus 361 -~-~~~~~---~~g~~~~~~~~~-~~-~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~--~~~~~~l~~~l~~l~~~ 431 (433)
+ ....+ .....+.+.+++ .. ..++... ++++||.+.+|... .+.+|+|+ +++.+|++.+++.|+++
T Consensus 282 g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~-L~~~gI~~~~g~~~----~g~iRiS~~~~~t~edId~l~~al~~~ 356 (361)
T 3m5u_A 282 GFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKE-AEEAGMIGLKGHRI----LGGIRASIYNALNLDQVKTLCEFMKEF 356 (361)
T ss_dssp TSEEESSCGGGBCSSEEEEEESSCTTHHHHHHHH-HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeeeccCCHHHcCCeEEEEECCCchhhhHHHHHH-HHHCCCEEecCCCc----cCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 5 44321 123456777774 22 2345544 55669999887542 24699997 44899999999999987
Q ss_pred h
Q 045431 432 Y 432 (433)
Q Consensus 432 l 432 (433)
.
T Consensus 357 ~ 357 (361)
T 3m5u_A 357 Q 357 (361)
T ss_dssp H
T ss_pred H
Confidence 5
No 228
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.80 E-value=4.1e-18 Score=162.14 Aligned_cols=316 Identities=11% Similarity=0.081 Sum_probs=193.1
Q ss_pred CCChHHHHHHHHHHHhhccc-CCC---CCCCC--CCCCCHHHHHHHHHHHhccCCCCC-CcEEE-cCChHHHHHH-HHHh
Q 045431 75 EPIPEVITSALAKRSYALST-QEG---YSGYG--AEQGEKPLRAAIASTFYKDLGIEE-GDIFV-SDGAKCDISR-LQIV 145 (433)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~-~~~---~~~Y~--~~~g~~~lr~~la~~l~~~~~~~~-~~i~~-~~G~~~al~~-l~~l 145 (433)
-+.|+.+++++.+.+.+... ..+ ....+ -..-..+.|+.+++++ +++. ++|++ |+|+++++++ +..+
T Consensus 36 t~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll----~~~~~~evif~t~~~T~a~n~ai~~l 111 (386)
T 3qm2_A 36 AMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLL----NIPSNYKVLFCHGGGRGQFAGVPLNL 111 (386)
T ss_dssp CCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHH----TCCTTEEEEEEESCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCCchHHHHHHHHhc
Confidence 46899999999876643321 011 11111 1356789999999998 7754 57888 6999999997 6888
Q ss_pred cCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecC--ccCC-cccC-CCC--CCCccEEEEcCCCCccc
Q 045431 146 FGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCT--AENG-FFPD-LST--VARTDIIFFCSPNNPTG 219 (433)
Q Consensus 146 ~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~-~~~--~~~~~~i~l~~p~nPtG 219 (433)
+++||+|++..-++.+.. +...+...| .+..++.+ ..+. ..++ ++. .+++++|.+++.+|.||
T Consensus 112 ~~~gd~v~~~~~~~~~~~-~~~~a~~~G----------~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG 180 (386)
T 3qm2_A 112 LGDKTTADYVDAGYWAAS-AIKEAKKYC----------APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDG 180 (386)
T ss_dssp CTTCCEEEEEESSHHHHH-HHHHHTTTS----------EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTT
T ss_pred cCCCCeEEEEeCCHHHHH-HHHHHHHhC----------CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcC
Confidence 999999876555554432 333333211 35556654 2221 2222 221 36889988888888999
Q ss_pred cC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccceeeeecccccccc
Q 045431 220 AA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFS 298 (433)
Q Consensus 220 ~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~ 298 (433)
+. .+ +++|. +|+++++|.+++... .|..+..+ + +++.|.+|++|.+| +|+++++++++.+
T Consensus 181 ~~i~p---i~~i~-----~g~~~~vDa~qs~g~---~pidv~~~----~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~ 241 (386)
T 3qm2_A 181 IAIDE---TPDFG-----PEVVVTADFSSTILS---APLDVSRY----G--VIYAGAQKNIGPAG--LTLVIVREDLLGK 241 (386)
T ss_dssp EECCC---CCCCC-----TTCCEEEECTTTTTS---SCCCGGGC----S--EEEEETTTTTCCTT--EEEEEEEGGGCSC
T ss_pred EecCc---hhhhc-----CCCEEEEEcccccCC---CCCCcccc----C--EEEEecccccCCCc--cEEEEECHHHHhh
Confidence 96 66 34443 799999999988321 24444443 2 45678899998777 8999999887532
Q ss_pred CC---cchhHHHHHHH-----hhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhcCCeee--cC--
Q 045431 299 DG---FPVAKDFNRIV-----CTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSLGFKVY--GG-- 366 (433)
Q Consensus 299 ~~---~~~~~~~~~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~--~~-- 366 (433)
.. +.+.. +.... ..+.+.....+..+++.++...+ .++++.++.++.++++.+.|++.++... .+
T Consensus 242 ~~~~~p~~~~-~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~g--G~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 318 (386)
T 3qm2_A 242 AHESCPSILD-YTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQG--GVAAMHKINQQKAELLYGVIDNSDFYRNDVAQAN 318 (386)
T ss_dssp CCTTSCGGGC-HHHHHHC-------CCSHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGG
T ss_pred hcccCCcHHH-HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHH
Confidence 11 11111 11111 11112222333334444443220 3688888999999999999998875321 11
Q ss_pred CCccEEEEECCC-CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeec--cChhHHHHHHHHHHHhh
Q 045431 367 KNAPYVWVQFPG-RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAF--GHRGNVLEACKRFKHLY 432 (433)
Q Consensus 367 ~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~l~~~l~~l~~~l 432 (433)
.....+.+.+++ ..+..+... ++++||.+.+|... .+.+|+|++ ++++|++.+++.|+++.
T Consensus 319 rs~~iv~f~~~~~~~~~~~~~~-L~~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~~ 382 (386)
T 3qm2_A 319 RSRMNVPFQLADNTLDKVFLEE-SFAAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDFE 382 (386)
T ss_dssp BCSSEEEEEESSGGGHHHHHHH-HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCccccHHHHHH-HHHCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 233467777774 123455555 45669999887643 245999974 48999999999999875
No 229
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.77 E-value=5.4e-18 Score=171.77 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=173.9
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCcEEEcCChHHHHHH-HHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccc
Q 045431 103 AEQGEKPLRAAIASTFYKDLGIEEGDIFVSDGAKCDISR-LQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEK 181 (433)
Q Consensus 103 ~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~G~~~al~~-l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 181 (433)
+..-..++++.+|+++ +++ ..+++++|++.++.+ +.++++|||.|++++++|.++...+...|.
T Consensus 193 ~~g~i~eaE~~lA~~f----Ga~-~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa---------- 257 (715)
T 3n75_A 193 HSGPHKEAEQYIARVF----NAD-RSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDV---------- 257 (715)
T ss_dssp TBTHHHHHHHHHHHHH----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCC----------
T ss_pred CcHHHHHHHHHHHHHh----CCC-CceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCC----------
Confidence 3445678999999997 653 467889998888876 688999999999999999999999998884
Q ss_pred cceEEEeecCccCCccc---------C---CC----CCCCc---cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEE
Q 045431 182 YGKIEYMRCTAENGFFP---------D---LS----TVART---DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIV 242 (433)
Q Consensus 182 ~~~~~~~~~~~~~~~~~---------~---~~----~~~~~---~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li 242 (433)
.+++++.+.+ .+.. + ++ ..+++ +++++++| ||+|.+++ +++|.++|+++ .++
T Consensus 258 --~pv~v~~~~~-~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~--~li 328 (715)
T 3n75_A 258 --TPIYFRPTRN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK--SIH 328 (715)
T ss_dssp --EEEEECCCBC-TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS--EEE
T ss_pred --EEEEEecccc-ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcC--cEE
Confidence 6666665432 1110 1 11 11233 48899999 99999998 56666777665 379
Q ss_pred Eeccccccc-cCCCCCcccccCC--CCcce-EEEeccccccccccc-ceeeeeccccccccCCcchhHHHHHHHhhc-cC
Q 045431 243 YDSAYALYI-SDDNPRSIFEIPG--AKEVA-IETSSFSKYAGFTGV-RLGWTVIPKELLFSDGFPVAKDFNRIVCTC-FN 316 (433)
Q Consensus 243 ~De~~~~~~-~~~~~~~~~~~~~--~~~~v-i~i~S~sK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 316 (433)
+||+|+... +.+.......+.. ..|.+ +++.|+||+++ |+ ..|++++++++. ...+.+..... +.
T Consensus 329 vDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~-------~~~~~~~~~~~~ST 399 (715)
T 3n75_A 329 FDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVN-------EETFNEAYMMHTTT 399 (715)
T ss_dssp EECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCC-------HHHHHHHHHHTSCS
T ss_pred EccccccccccCCccccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhh-------HHHHHHHHHhhcCC
Confidence 999998643 3322111112211 12443 66999999974 54 358888877642 23444433333 23
Q ss_pred CCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhhc-----C--CeeecCC----------------------
Q 045431 317 GASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNSL-----G--FKVYGGK---------------------- 367 (433)
Q Consensus 317 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----g--~~~~~~~---------------------- 367 (433)
+++.+..++...+++......-+++++++.++.+.+++.|++. | +.+..+.
T Consensus 400 Spsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~ 479 (715)
T 3n75_A 400 SPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNI 479 (715)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTC
T ss_pred CchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCccccccccccc
Confidence 3444444433333321110112445666777777777777654 2 2332211
Q ss_pred -Ccc------EEEEECCC-----------CChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEE--eeccChhHHHHHHHH
Q 045431 368 -NAP------YVWVQFPG-----------RSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRV--SAFGHRGNVLEACKR 427 (433)
Q Consensus 368 -~g~------~~~~~~~~-----------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi--~~~~~~~~l~~~l~~ 427 (433)
.+. =+.+..++ .....+. ..|+++||.+.-.+. ..+=+ +++.+.+++++++++
T Consensus 480 ~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~-~~L~~~~I~~E~~d~------~~vl~l~s~g~~~~~~~~L~~a 552 (715)
T 3n75_A 480 DNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVA-KYLDEHGIVVEKTGP------YNLLFLFSIGIDKTKALSLLRA 552 (715)
T ss_dssp CSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHH-HHHHHTTCCCSEEET------TEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHH-HHHHHCCCEEEecCC------CcEEEEeCCCCCHHHHHHHHHH
Confidence 010 14555543 2233444 445677998865432 33323 245588888888888
Q ss_pred HHHh
Q 045431 428 FKHL 431 (433)
Q Consensus 428 l~~~ 431 (433)
|.++
T Consensus 553 L~~~ 556 (715)
T 3n75_A 553 LTDF 556 (715)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 230
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.77 E-value=7.4e-17 Score=156.60 Aligned_cols=352 Identities=11% Similarity=0.079 Sum_probs=212.2
Q ss_pred HHHHHhcCCCCceEEecCC--CCCC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCC-CCCc
Q 045431 53 KAAHMLKYPDAEVISLGIG--DTTE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGI-EEGD 128 (433)
Q Consensus 53 ~~~~~~~~~~~~~i~l~~g--~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~-~~~~ 128 (433)
++....+.+++..||+..| ...+ ..+|.+.+++.+++.+.. .....+.+.....+|-+.|++.. +. ..+.
T Consensus 54 ~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~--~~~~~~~~~~~~~~lae~L~~~~----p~~~~~~ 127 (456)
T 4atq_A 54 DGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT--HTCFMVTPYEGYVAVTEQLNRLT----PGDHAKR 127 (456)
T ss_dssp ETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS--CCTTTTSCCHHHHHHHHHHHHHS----SCSSCEE
T ss_pred ecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc--CcccCccCcHHHHHHHHHHHHhC----CCCCCcE
Confidence 3344455677889998665 3333 367999999999987642 11122222333344555555543 33 3567
Q ss_pred EEEcCChHHHHHH-H--HHhcCCCCEEEEeCCCChhhhhhHHHhCCcc-c-ccccccccceEEEeecCccC-CcccC---
Q 045431 129 IFVSDGAKCDISR-L--QIVFGSNVTMAVQDPSYPAYVDSSVIMGQTG-E-FQKDAEKYGKIEYMRCTAEN-GFFPD--- 199 (433)
Q Consensus 129 i~~~~G~~~al~~-l--~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~--- 199 (433)
+++++++++|... + ........+|+..+.+|++............ . ...++.....+..+|..... ....+
T Consensus 128 v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~ 207 (456)
T 4atq_A 128 TVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITG 207 (456)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCH
T ss_pred EEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccH
Confidence 9999999999885 4 2223445788889999988654443332211 1 11122222344555542110 00000
Q ss_pred C----------CC---CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCC
Q 045431 200 L----------ST---VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPG 264 (433)
Q Consensus 200 ~----------~~---~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 264 (433)
. +. ..++.+ ++..| +.-.|.+ .+++.+++|.++|++||+++|.||++.++...|.......+.-
T Consensus 208 ~~~~~~~~~~~e~~~~~~~iAA-vivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv 286 (456)
T 4atq_A 208 AEAAKRAITMIEKQIGGDQVAA-IIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV 286 (456)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC
T ss_pred HHHHHHHHHHHHHhhcCCceEE-EEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCC
Confidence 0 00 123444 44566 5556754 5678999999999999999999999998766665444434433
Q ss_pred CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 344 (433)
.+| ++ +++|.+| .|+.+|.+++++++. +.+......++++.++++.+++.+.|+.... +++.++
T Consensus 287 ~PD-iv---t~gK~lg-gg~P~~av~~~~~i~--------~~~~~~~~~~Tf~gnpla~aaala~L~~i~~---~~l~~~ 350 (456)
T 4atq_A 287 VPD-II---TMAKGIA-GGLPLSAITGRADLL--------DAVHPGGLGGTYGGNPVACAAALAAIDTMEQ---HDLNGR 350 (456)
T ss_dssp CCS-EE---EECGGGG-TTSSCEEEEEEHHHH--------TTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH---TTHHHH
T ss_pred CCc-hh---hhhhccc-CcCCceeeEecHHHH--------hcccccCCCCCCCCChHHHHhhHHHHHHHhh---ccHHHH
Confidence 355 23 6789998 999999999998875 3333334556777899999998888863221 223344
Q ss_pred HHHHHHHHHHHHhhc----C---Cee---ecCCCccEEEEECCCC-----C---hHHHHHHHHHcCCeEecCCCCCCCCC
Q 045431 345 YKENTDIIVETFNSL----G---FKV---YGGKNAPYVWVQFPGR-----S---SWDVFSEILEKTHVVTTPGSGFGPGG 406 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~----g---~~~---~~~~~g~~~~~~~~~~-----~---~~~~~~~l~~~~gi~v~~g~~f~~~~ 406 (433)
.++.-+++.+.|+++ . ..+ +. ..|+++-+++... + ...+...+++ +|+.+.+... .
T Consensus 351 ~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VR-G~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~----~ 424 (456)
T 4atq_A 351 ARHIEELALGKLRELAAELSAGGGSVVGDIR-GRGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGT----Y 424 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----CEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECT----T
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCceEEee-ecceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCC----C
Confidence 444445555544432 1 111 12 1466777776311 1 2345555555 4999876432 2
Q ss_pred CCeEEEe--eccChhHHHHHHHHHHHhhC
Q 045431 407 EGFIRVS--AFGHRGNVLEACKRFKHLYK 433 (433)
Q Consensus 407 ~~~iRi~--~~~~~~~l~~~l~~l~~~l~ 433 (433)
.+.|||. +..+++++++++++|.++|+
T Consensus 425 ~~~irl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 425 GNVIRLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 3679999 56799999999999998874
No 231
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.76 E-value=3.4e-17 Score=158.26 Aligned_cols=333 Identities=13% Similarity=0.112 Sum_probs=199.9
Q ss_pred HHHhcCCCCceEEecCCCC--CC-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEE
Q 045431 55 AHMLKYPDAEVISLGIGDT--TE-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFV 131 (433)
Q Consensus 55 ~~~~~~~~~~~i~l~~g~~--~~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~ 131 (433)
....+.+++..||+..|.- .+ ..+|.+.+++.+++.+.. +...+.....+|.+.|++.+ + ..+.+++
T Consensus 79 ~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~-----~~~~~~~~~~~lae~l~~~~----p-~~~~v~f 148 (454)
T 4ao9_A 79 AALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI-----NLTGHNLLEGRLARLICERF----P-QIEQLRF 148 (454)
T ss_dssp TEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS-----CCCSEESSHHHHHHHHHHHS----T-TCSEEEE
T ss_pred CEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC-----CccCCcHHHHHHHHHHHHhC----C-CCCEEEE
Confidence 3344566788999866542 23 367999999999987531 11122344566777777764 3 4689999
Q ss_pred cCChHHHHHH-HHH--hcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC-CCcc
Q 045431 132 SDGAKCDISR-LQI--VFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV-ARTD 207 (433)
Q Consensus 132 ~~G~~~al~~-l~~--l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 207 (433)
++++++|... +.. .....++|+..+.+|.+........... ... -.....+|.++.......+++. +++.
T Consensus 149 ~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~-----~~~-~~~~~~~p~nd~~~l~~~l~~~~~~iA 222 (454)
T 4ao9_A 149 TNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSP-----TTV-PFDFLVLPYNDAQTARAQIERHGPEIA 222 (454)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCT-----TSC-CSEEEEECTTCHHHHHHHHHHTGGGEE
T ss_pred eCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccC-----ccC-CCCcccCCCchHHHHHHHHhhcCCceE
Confidence 9999999875 422 2234568888888887754322111100 000 0133344443211111112222 3455
Q ss_pred EEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccccccc
Q 045431 208 IIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVR 285 (433)
Q Consensus 208 ~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r 285 (433)
+|+ ..| +...|.+ .+++.+++|.++|++||+++|.||++.. ..+.......+.-.+| +-+++|.+| .|+.
T Consensus 223 avI-vEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv~PD----i~t~gK~lg-gG~P 294 (454)
T 4ao9_A 223 VVL-VEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANKLGIRSD----LTTLGKYIG-GGMS 294 (454)
T ss_dssp EEE-ECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHHHTCCCS----EEEEEGGGG-TTSS
T ss_pred EEE-eccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhccCCCCc----EEEeccccC-CCCc
Confidence 544 466 5556755 4678899999999999999999999973 2222221122222344 237899998 8999
Q ss_pred eeeeeccccccccCCcchhHHHH----HHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHHHHHHHHHHHHHHhh---
Q 045431 286 LGWTVIPKELLFSDGFPVAKDFN----RIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGFYKENTDIIVETFNS--- 358 (433)
Q Consensus 286 ~G~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--- 358 (433)
+|.++++++++ +.+. .+....+.+.++++.+++.+.|+.... ++..++++++.++|.+.|++
T Consensus 295 iga~~~~~ei~--------~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~ 363 (454)
T 4ao9_A 295 FGAFGGRADVM--------ALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT---PEAAGALAERGEALRARLNALCA 363 (454)
T ss_dssp CEEEEECHHHH--------GGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeeHHHHH--------HHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHh
Confidence 99999998885 2221 122344556788988888888763322 34455556666666666554
Q ss_pred -cCCee-ecCCCccEEEEECCCC-----------C---hHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEeeccChhHHH
Q 045431 359 -LGFKV-YGGKNAPYVWVQFPGR-----------S---SWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRGNVL 422 (433)
Q Consensus 359 -~g~~~-~~~~~g~~~~~~~~~~-----------~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~l~ 422 (433)
+++.. +. .-|.++.+.+... + ...++..++++ ||.+.|. +++.++...+++||+
T Consensus 364 ~~~~~~~vr-g~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~--------~~~~~s~~~T~~dId 433 (454)
T 4ao9_A 364 NEGVAMQFT-GIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR--------GFVVLSLPLTDADID 433 (454)
T ss_dssp HHTBSCEEE-EETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT--------CEEECCTTCCHHHHH
T ss_pred hCCCCEEEe-eeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC--------CCEEEeCCCCHHHHH
Confidence 34322 12 2355555655310 1 12344555655 9999763 345566677999999
Q ss_pred HHHHHHHHhh
Q 045431 423 EACKRFKHLY 432 (433)
Q Consensus 423 ~~l~~l~~~l 432 (433)
+++++|++++
T Consensus 434 ~~l~al~~~l 443 (454)
T 4ao9_A 434 RYVAAIGSFI 443 (454)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 232
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.74 E-value=3.4e-16 Score=152.52 Aligned_cols=346 Identities=11% Similarity=0.061 Sum_probs=207.9
Q ss_pred HhcCCCCceEEecCCCCC--C-CChHHHHHHHHHHHhhcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCCCcEEEcC
Q 045431 57 MLKYPDAEVISLGIGDTT--E-PIPEVITSALAKRSYALSTQEGYSGYGAEQGEKPLRAAIASTFYKDLGIEEGDIFVSD 133 (433)
Q Consensus 57 ~~~~~~~~~i~l~~g~~~--~-~~~~~~~~a~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~l~~~~~~~~~~i~~~~ 133 (433)
..+.+++..||+..|.-. + ..+|.+.+++.+++.+.......+.+ ..+....+|+.|.+..+.+.+.|++++
T Consensus 61 l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~-----~~~~~~~lAe~L~~~~p~~~~~v~f~~ 135 (473)
T 4e3q_A 61 IVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGR-----MSDQTVMLSEKLVEVSPFDSGRVFYTN 135 (473)
T ss_dssp EEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTE-----EEHHHHHHHHHHHHHSSCSSCEEEEES
T ss_pred EEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccc-----cCHHHHHHHHHHHhhCCCCccEEEEeC
Confidence 345667889998776532 2 36799999999999864311111111 123344455555443355667999999
Q ss_pred ChHHHHHHHHHhc--------CCC-CEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCc------cCCccc
Q 045431 134 GAKCDISRLQIVF--------GSN-VTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTA------ENGFFP 198 (433)
Q Consensus 134 G~~~al~~l~~l~--------~~g-d~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 198 (433)
++++|.+....+. +++ .+|+....+|++................++........++... ......
T Consensus 136 sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 215 (473)
T 4e3q_A 136 SGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEE 215 (473)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHH
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhh
Confidence 9999988632221 233 5788888888885544333332222222222222333333211 111000
Q ss_pred --------CCCC-----CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccC
Q 045431 199 --------DLST-----VARTDIIFFCSP-NNPTGAA-ATREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIP 263 (433)
Q Consensus 199 --------~~~~-----~~~~~~i~l~~p-~nPtG~~-~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~ 263 (433)
++++ ..+.-+.++.-| +.-.|++ .+++.+++|.++|++||+++|.||+...|...+.......+.
T Consensus 216 ~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~g 295 (473)
T 4e3q_A 216 QFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYD 295 (473)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcC
Confidence 0110 122234455566 5556755 467799999999999999999999999887666544333343
Q ss_pred CCCcceEEEecccccccccc-cceeeeeccccccccCCcchhHHHHHH-------HhhccCCCcHHHHHHHHHhcCcCCh
Q 045431 264 GAKEVAIETSSFSKYAGFTG-VRLGWTVIPKELLFSDGFPVAKDFNRI-------VCTCFNGASNISQAGGLACLSPEGF 335 (433)
Q Consensus 264 ~~~~~vi~i~S~sK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~ 335 (433)
-.+| ++ +++|.++ .| +.+|.+++++++. +.+... ....+.+.++++.+++.+.|+....
T Consensus 296 v~PD-i~---t~~K~l~-gG~~Pl~av~~~~~i~--------~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~ 362 (473)
T 4e3q_A 296 FTPD-AI---ISSKNLT-AGFFPMGAVILGPELS--------KRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN 362 (473)
T ss_dssp CCCS-EE---EECGGGG-TTSSCCEEEEECHHHH--------HHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCC-hH---Hhccccc-CCCCCcccccccHHHH--------HHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc
Confidence 3455 23 6899997 66 8999999998884 444321 2345566789999888888763221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc----CCeeecCCCccEEEEECCC-C----------C-hHHHHHHHHHcCCeEecCC
Q 045431 336 KAVHEVIGFYKENTDIIVETFNSL----GFKVYGGKNAPYVWVQFPG-R----------S-SWDVFSEILEKTHVVTTPG 399 (433)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~g~~~~~~~~~-~----------~-~~~~~~~l~~~~gi~v~~g 399 (433)
+++.++.++..+++.+.|+++ .+.-+.. .|+++-+++.. . . ...+...++ ++|+.+.|.
T Consensus 363 ---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG-~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~ 437 (473)
T 4e3q_A 363 ---EGLAENVRRLAPRFEERLKHIAERPNIGEYRG-IGFMWALEAVKDKASKTPFDGNLSVSERIANTCT-DLGLICRPL 437 (473)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECEEE
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHhcCCCeeEEee-cceEEEEEEecCccccccccccHHHHHHHHHHHH-HCCcEEEec
Confidence 233444555556666666553 2322222 45666666531 0 1 234555555 459999863
Q ss_pred CCCCCCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 400 SGFGPGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 400 ~~f~~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+.+||+ +..+++++++++++|.++|
T Consensus 438 -------g~~i~l~PPL~it~~eid~~~~~l~~al 465 (473)
T 4e3q_A 438 -------GQSVVLCPPFILTEAQMDEMFDKLEKAL 465 (473)
T ss_dssp -------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2579998 5679999999999998876
No 233
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.64 E-value=3.3e-14 Score=133.55 Aligned_cols=348 Identities=12% Similarity=0.123 Sum_probs=207.1
Q ss_pred eEEecCCCCCCCChHHHHHHHHHHHhhcccCCCCC--CCCC-CCCCHHHHHHHHHHHhccCCCCCC----cEEEcCChHH
Q 045431 65 VISLGIGDTTEPIPEVITSALAKRSYALSTQEGYS--GYGA-EQGEKPLRAAIASTFYKDLGIEEG----DIFVSDGAKC 137 (433)
Q Consensus 65 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~Y~~-~~g~~~lr~~la~~l~~~~~~~~~----~i~~~~G~~~ 137 (433)
-|+|=-.++ -.++.+.+++-..+.+... .++. +|.. ..-..++.....+..++.++++.. ||..-||+++
T Consensus 56 ~ieLIASEN--~~S~aV~~a~gS~ltnKYa-EGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~A 132 (490)
T 3ou5_A 56 GLELIASEN--FCSRAALEALGSCLNNKYS-EGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 132 (490)
T ss_dssp SEECCTTCC--CCCHHHHHHHTSGGGTCCC-CC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred CceEecCCC--cCCHHHHHHhcCccccccc-CCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHH
Confidence 477766665 3678888888777764322 2222 2222 222333333333333446788766 8999999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCC------CCCccEEEE
Q 045431 138 DISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLST------VARTDIIFF 211 (433)
Q Consensus 138 al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~l 211 (433)
.+....++++|||+|+-.+..+.++..-........ ......+.+.+.++++++.+ ..|+++ ..+||+|+.
T Consensus 133 N~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~--v~~sg~~~~~~~Y~vd~~t~-~IDyd~~~~~A~~~kPklIi~ 209 (490)
T 3ou5_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKR--ISATSIFFESMPYKLNPKTG-LIDYNQLALTARLFRPRLIIA 209 (490)
T ss_dssp HHHHHHHHCC-CCCEECBC------------------------------CBCEETTTT-EECHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHcCCCCEEEecccCCCCcccccccCCCcc--cccccccccccccccCCCCC-cccHHHHHHHHhhcCCCeEEE
Confidence 999999999999999999988877643221000000 00111123566666665533 334332 358998886
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCC-CCcccccCCCCcceEEEecccccccccccceeee
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYA-LYISDDN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWT 289 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~-~~~~~~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l 289 (433)
-...+|. .++ .+++.++|.+.|.++++|-+|- ++...+. |.|+.. . .|+.+|.+|+| +|-|-|.|
T Consensus 210 G~SaY~r--~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-A-----DvVTtTTHKTL--rGPrGG~I 276 (490)
T 3ou5_A 210 GTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-A-----DIVTTTTHKTL--RGARSGLI 276 (490)
T ss_dssp CCSSCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-C-----SEEEEESSSTT--CSCSCEEE
T ss_pred CCccCcc--ccC---HHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-c-----eEEeccccccc--cCCCceEE
Confidence 4444543 234 7888888999999999999986 4666554 444422 1 27788999998 79999999
Q ss_pred eccccccccC-------CcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCCh-hHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045431 290 VIPKELLFSD-------GFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGF-KAVHEVIGFYKENTDIIVETFNSLGF 361 (433)
Q Consensus 290 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~g~ 361 (433)
.++++....+ ...+.+.+.+.......+.+.+...|+.+.-..+.. ...+...+++.++.+.|.+.|.+.|+
T Consensus 277 l~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~ 356 (490)
T 3ou5_A 277 FYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY 356 (490)
T ss_dssp EEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9887532100 012356676665555555666666555544221211 34577788899999999999999999
Q ss_pred eeec-CCCccEEEEECCC-CChHHHHHHHHHcCCeEec----CCCCCCCCCCCeEEEee------ccChhHHHHHHHHHH
Q 045431 362 KVYG-GKNAPYVWVQFPG-RSSWDVFSEILEKTHVVTT----PGSGFGPGGEGFIRVSA------FGHRGNVLEACKRFK 429 (433)
Q Consensus 362 ~~~~-~~~g~~~~~~~~~-~~~~~~~~~l~~~~gi~v~----~g~~f~~~~~~~iRi~~------~~~~~~l~~~l~~l~ 429 (433)
.++. ......+++++.+ ......++.+|++.||.++ |++. .+..++.|||.. ...++|+++..+-|.
T Consensus 357 ~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~ 435 (490)
T 3ou5_A 357 SLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFID 435 (490)
T ss_dssp EEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred eeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHH
Confidence 9864 3344578888862 2234556677778899985 5542 233456799994 236888888887776
Q ss_pred Hhh
Q 045431 430 HLY 432 (433)
Q Consensus 430 ~~l 432 (433)
+++
T Consensus 436 ~~l 438 (490)
T 3ou5_A 436 EGV 438 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 234
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.61 E-value=2.1e-15 Score=156.58 Aligned_cols=212 Identities=9% Similarity=0.044 Sum_probs=132.4
Q ss_pred CccEEEEcCC--CCccccCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcccccCCCCcceEEEecccccccc
Q 045431 205 RTDIIFFCSP--NNPTGAAA-TREQLTRLVQFAKDNGSIIVYDSAYALYISDDNPRSIFEIPGAKEVAIETSSFSKYAGF 281 (433)
Q Consensus 205 ~~~~i~l~~p--~nPtG~~~-~~~~~~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~sK~~~~ 281 (433)
++.+ ++..| ++..|+.. +++.+++|.++|++||+++|.||++..|...|.......+.-.+| + .+++|.++
T Consensus 594 ~iaa-vi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PD-i---itlsK~L~- 667 (831)
T 4a0g_A 594 HVGA-LIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPD-I---ACFAKLLT- 667 (831)
T ss_dssp EEEE-EEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCS-E---EEECGGGG-
T ss_pred cEEE-EEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCc-E---EEEecccc-
Confidence 3444 44566 68888665 888999999999999999999999998866665443323322234 2 37999997
Q ss_pred cc-cceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCc---CCh-hHHHHHHHHHHHH-HHHHHHH
Q 045431 282 TG-VRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSP---EGF-KAVHEVIGFYKEN-TDIIVET 355 (433)
Q Consensus 282 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~-~~~~~~~~~~~~~-~~~l~~~ 355 (433)
.| +++|+++++++++..-... .....+....+.+.++++++++.+.|+. ... +++.+..+++++. .+.+.+.
T Consensus 668 gG~~Plgav~~~~~i~~~~~~~--~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~ 745 (831)
T 4a0g_A 668 GGMVPLAVTLATDAVFDSFSGD--SKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQ 745 (831)
T ss_dssp TTSSCCEEEEECHHHHHTTCSS--CGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHH
T ss_pred cCccCcEEEEECHHHHHHHhcc--cccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 7999999998875210000 0001122345566789999888887752 111 1111111111110 1234445
Q ss_pred Hhhc-CCeeecCCCccEEEEECCCC---------ChHHHHHHHHHcCCeEecCCCCCCCCCCCeEEEe--eccChhHHHH
Q 045431 356 FNSL-GFKVYGGKNAPYVWVQFPGR---------SSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVS--AFGHRGNVLE 423 (433)
Q Consensus 356 l~~~-g~~~~~~~~g~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~~~l~~ 423 (433)
+.++ .+..+.+ .|.++.+.+... ....+...++ ++||.++|+ .+.+||+ +..+++++++
T Consensus 746 l~~~~~v~~vrg-~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~-e~Gv~v~p~-------g~~lrl~pp~~~t~e~id~ 816 (831)
T 4a0g_A 746 ISSHSAVQRVVV-IGTLFALELKADASNSGYASLYAKSLLIMLR-EDGIFTRPL-------GNVIYLMCGPCTSPEICRR 816 (831)
T ss_dssp HHHSTTEEEEEE-ETTEEEEEEC---------CHHHHHHHHHHH-HTTEECCCB-------TTEEEEECCTTCCHHHHHH
T ss_pred HhhCCCceeEee-cccEEEEEEecCccccccchHHHHHHHHHHH-HCCcEEEec-------CCEEEEECCCCCCHHHHHH
Confidence 5555 3333332 567777777421 1234555555 459999875 2689998 4669999999
Q ss_pred HHHHHHHhhC
Q 045431 424 ACKRFKHLYK 433 (433)
Q Consensus 424 ~l~~l~~~l~ 433 (433)
++++|.++++
T Consensus 817 ~~~~l~~~l~ 826 (831)
T 4a0g_A 817 LLTKLYKRLG 826 (831)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 235
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.44 E-value=8.9e-12 Score=117.75 Aligned_cols=280 Identities=12% Similarity=0.041 Sum_probs=162.2
Q ss_pred CCC-CCcEEEcCChHHHHHH-HHHhcCC----CCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccC-C
Q 045431 123 GIE-EGDIFVSDGAKCDISR-LQIVFGS----NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAEN-G 195 (433)
Q Consensus 123 ~~~-~~~i~~~~G~~~al~~-l~~l~~~----gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 195 (433)
|++ ....++++|+|.+..+ +.+.+++ ||.|+++..+|.+....+..+|. .+++++...+. .
T Consensus 130 G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl------------~Pv~V~p~~d~~~ 197 (501)
T 3hl2_A 130 GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGF------------EPVVIENVLEGDE 197 (501)
T ss_dssp TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTC------------EEEEECEEEETTE
T ss_pred CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCC------------eEEEEeeeecccc
Confidence 554 3468999999977664 6777764 49999999999999999999995 44444432111 1
Q ss_pred cccCCC-------CC-CCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccc-cCCC-CCcccccCC
Q 045431 196 FFPDLS-------TV-ARTDIIFFCSP-NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYI-SDDN-PRSIFEIPG 264 (433)
Q Consensus 196 ~~~~~~-------~~-~~~~~i~l~~p-~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~-~~~~-~~~~~~~~~ 264 (433)
...+++ +. .+..++++++| .|-.+.+-+ +++|+++|++||+++++|++|+... +... +.+..++..
T Consensus 198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~Gr 274 (501)
T 3hl2_A 198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGR 274 (501)
T ss_dssp EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCC
Confidence 222221 11 13334444444 443334344 9999999999999999999998632 2211 223333321
Q ss_pred CCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHHHhcCcCChhHHHHHHHH
Q 045431 265 AKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGFKAVHEVIGF 344 (433)
Q Consensus 265 ~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 344 (433)
-.+++-|.+|++- .-+.-|.+..+++-. .+.+..... ...++.++... ...+.+.+.+.++++.++
T Consensus 275 ---AD~vVqS~HK~ll-vpIGG~ii~~~d~e~-------l~~~~~~yP--Gr~S~Spsldl-~~tLL~lGr~Gy~~ll~e 340 (501)
T 3hl2_A 275 ---IDAFVQSLDKNFM-VPVGGAIIAGFNDSF-------IQEISKMYP--GRASASPSLDV-LITLLSLGSNGYKKLLKE 340 (501)
T ss_dssp ---CCEEEEEHHHHHC-CCSSCEEEEESCHHH-------HHHHHHTSC--SCBCSHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ---CcEEEecccccce-eecCceEEEeCCHHH-------HHHHHHhCC--CCCCCcHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 1277889999884 433333443443221 133322111 11123333322 233333444556788888
Q ss_pred HHHHHHHHHHHHhhc----CCeeecCC-CccEEEEECCCC-----C-hHHHHHHHHHcCCe---E-ecCCC---------
Q 045431 345 YKENTDIIVETFNSL----GFKVYGGK-NAPYVWVQFPGR-----S-SWDVFSEILEKTHV---V-TTPGS--------- 400 (433)
Q Consensus 345 ~~~~~~~l~~~l~~~----g~~~~~~~-~g~~~~~~~~~~-----~-~~~~~~~l~~~~gi---~-v~~g~--------- 400 (433)
..++.+++.+.|+++ |-++.... ...-+.+.+... . ...+-..|..+ +| . |.+|.
T Consensus 341 ~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r-~vsG~Rvv~~~~~~~i~g~~f 419 (501)
T 3hl2_A 341 RKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR-QVSGARVVPLGSMQTVSGYTF 419 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHT-TCCSCEEECTTCCEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhc-CCCcceeecCCCceEECCeee
Confidence 888888888888774 55554432 334566666522 1 23344444443 33 3 34555
Q ss_pred -CCCCC----CCCeEEEee--ccChhHHHHHHHHHHHhh
Q 045431 401 -GFGPG----GEGFIRVSA--FGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 401 -~f~~~----~~~~iRi~~--~~~~~~l~~~l~~l~~~l 432 (433)
.|+.. ...++=++. ..+.+|++..+++|.+++
T Consensus 420 ~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~ 458 (501)
T 3hl2_A 420 RGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCL 458 (501)
T ss_dssp SSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44432 134676663 558999999999999886
No 236
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.31 E-value=1.1e-10 Score=111.60 Aligned_cols=298 Identities=12% Similarity=0.034 Sum_probs=163.2
Q ss_pred CCHHHHHHHHHHHhccCCCCC-CcEEEcCChHHHHH-HHHHhcCC----CCEEEEeCCCChhhhhhHHHhCCcccccccc
Q 045431 106 GEKPLRAAIASTFYKDLGIEE-GDIFVSDGAKCDIS-RLQIVFGS----NVTMAVQDPSYPAYVDSSVIMGQTGEFQKDA 179 (433)
Q Consensus 106 g~~~lr~~la~~l~~~~~~~~-~~i~~~~G~~~al~-~l~~l~~~----gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 179 (433)
+...+.+.+..|+.+.+|++. ...++++|+|.+.. ++...+++ ++.|++++.+|.++..++..+|.
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl-------- 166 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGF-------- 166 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCC--------
Confidence 345667777777776445543 34588888885544 45666554 89999999999999999999995
Q ss_pred cccceEEEeecCcc-CCcccCCC-------CCC-CccEEEEcCCC-CccccCCCHHHHHHHHHHHHHcCCEEEEeccccc
Q 045431 180 EKYGKIEYMRCTAE-NGFFPDLS-------TVA-RTDIIFFCSPN-NPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~~-------~~~-~~~~i~l~~p~-nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
.++.++...+ .....+++ +.+ +.+++++++|. +.+|.+-+ +++|+++|++||+++++|++|+.
T Consensus 167 ----~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~ 239 (450)
T 3bc8_A 167 ----EPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGL 239 (450)
T ss_dssp ----EEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTT
T ss_pred ----eeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCch
Confidence 4444443211 11122221 112 34566666674 44556555 99999999999999999999995
Q ss_pred cccC-CC-CCcccccCCCCcceEEEecccccccccccceeeeeccccccccCCcchhHHHHHHHhhccCCCcHHHHHHHH
Q 045431 250 YISD-DN-PRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVAKDFNRIVCTCFNGASNISQAGGL 327 (433)
Q Consensus 250 ~~~~-~~-~~~~~~~~~~~~~vi~i~S~sK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 327 (433)
.... .. +.+..+..+. | .++.|.+|++. .....+++..++... ...+..... ...++.++.....
T Consensus 240 ~~~~~~~l~~~a~~~~~A-D--~~v~S~HK~l~-a~~~~~~l~~rd~~~-------~~~~~~~~~--g~~s~SpsL~l~~ 306 (450)
T 3bc8_A 240 QSSKCMHLIQQGARVGRI-D--AFVQSLDKNFM-VPVGGAIIAGFNEPF-------IQDISKMYP--GRASASPSLDVLI 306 (450)
T ss_dssp TCHHHHHHHHHHHHHSCC-C--EEEEEHHHHHS-CCSSCEEEEESCHHH-------HHHHHHHSC--SCBCSHHHHHHHH
T ss_pred hhhhhHhHHHHHhcccCC-C--EEEECCccCCC-chhccEEEEecCHHH-------HHHHHHHhh--cCCcccHHHHHHH
Confidence 3221 10 1111111221 2 66789999985 555567776643321 122222110 1122344444333
Q ss_pred HhcCcCChhHHHHHHHHHHHHHHHHHHHHhh----cCCeeecCCC-ccEEEEECC------CCChHHHHHHHHHc--CCe
Q 045431 328 ACLSPEGFKAVHEVIGFYKENTDIIVETFNS----LGFKVYGGKN-APYVWVQFP------GRSSWDVFSEILEK--THV 394 (433)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~~~~~-g~~~~~~~~------~~~~~~~~~~l~~~--~gi 394 (433)
.++. .+.+.+.+..++..+..+.+.+.+++ +|..+..... +.-..+.+. ..+...+.-.+... .|.
T Consensus 307 ~l~~-~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~ 385 (450)
T 3bc8_A 307 TLLS-LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGA 385 (450)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSC
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccc
Confidence 3332 24344555555555566666666644 3666554221 112223232 12333444443332 233
Q ss_pred EecC--------CCC---CC----CCCCCeEEEe--eccChhHHHHHHHHHHHhh
Q 045431 395 VTTP--------GSG---FG----PGGEGFIRVS--AFGHRGNVLEACKRFKHLY 432 (433)
Q Consensus 395 ~v~~--------g~~---f~----~~~~~~iRi~--~~~~~~~l~~~l~~l~~~l 432 (433)
.+.+ |.. |+ ..+..++=+. ++.+++++++++++|++++
T Consensus 386 ~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~ 440 (450)
T 3bc8_A 386 RAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCL 440 (450)
T ss_dssp EEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3331 111 11 1223455444 3568999999999998864
No 237
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=98.29 E-value=7.2e-08 Score=76.96 Aligned_cols=47 Identities=13% Similarity=0.003 Sum_probs=38.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccc---cccCC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGN---LGKLQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~---~~~l~-~g~~~~~ 48 (433)
++++++|.+|.|+||++|||+|+||+.|+|||+|+ +..|. .|++...
T Consensus 21 ~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 21 QKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp HHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 47889999999999999999999999999999996 43443 3665543
No 238
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=98.13 E-value=1.9e-07 Score=73.63 Aligned_cols=36 Identities=6% Similarity=-0.096 Sum_probs=33.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++++..|.+|.++||++|||+|+||+.++||++|+-
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr 46 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATAR 46 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHH
Confidence 467889999999999999999999999999999964
No 239
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=1.4e-07 Score=74.24 Aligned_cols=36 Identities=11% Similarity=-0.082 Sum_probs=32.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++++..|.+|.++||++|||+|+||+.++||++|+-
T Consensus 18 ~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr 53 (126)
T 3ic7_A 18 DRICDDILLGQYEEEGRIPSVREYASIVEVNANTVM 53 (126)
T ss_dssp HHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGH
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHH
Confidence 467889999999999999999999999999999964
No 240
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=98.00 E-value=8.5e-07 Score=69.65 Aligned_cols=37 Identities=14% Similarity=-0.137 Sum_probs=33.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++..|.+|.++||++|||+|+||+.++||++|+-.
T Consensus 20 ~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~ 56 (125)
T 3neu_A 20 DWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSR 56 (125)
T ss_dssp HHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHH
Confidence 4678899999999999999999999999999999643
No 241
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=97.97 E-value=7.7e-07 Score=68.58 Aligned_cols=37 Identities=11% Similarity=-0.072 Sum_probs=33.7
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++..|.+|.++||++|||+|+||+.++||++|+-.
T Consensus 16 ~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~ 52 (113)
T 3tqn_A 16 DKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSK 52 (113)
T ss_dssp HHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHH
Confidence 4678899999999999999999999999999999643
No 242
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=97.88 E-value=1.5e-06 Score=68.18 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=33.7
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++..|.+|.++||++|||+|+||+.++||++|+-.
T Consensus 18 ~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~ 54 (126)
T 3by6_A 18 DRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAK 54 (126)
T ss_dssp HHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHH
Confidence 3678899999999999999999999999999999643
No 243
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=97.76 E-value=4e-06 Score=74.12 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=33.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++|++.|.+|.++||++|||+++||+++||||+|+-.
T Consensus 14 ~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVRe 50 (239)
T 1hw1_A 14 EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLRE 50 (239)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHH
Confidence 4688999999999999999999999999999999643
No 244
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=97.72 E-value=1e-05 Score=61.01 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=38.1
Q ss_pred cccccccccccccccCCChhhHHHHHhccccccc---cccCCC-CCCcH
Q 045431 3 NAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGN---LGKLQA-GYLFP 47 (433)
Q Consensus 3 ~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~---~~~l~~-g~~~~ 47 (433)
.++..|.+|.+++|++|||+++||+.++||++|+ +..|.. |++..
T Consensus 19 ~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 19 HFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp HHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE
T ss_pred HHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5788999999999999999999999999999996 445543 77654
No 245
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=97.69 E-value=5.4e-06 Score=73.23 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=33.9
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
++++++|.+|+++||++|||+|+||+++||||+|+-.
T Consensus 11 ~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVRE 47 (239)
T 2di3_A 11 DWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLRE 47 (239)
T ss_dssp HHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHH
Confidence 4688999999999999999999999999999999643
No 246
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=97.68 E-value=2.8e-06 Score=75.34 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=3.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc---CC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK---LQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~---l~-~g~~~~~ 48 (433)
+++++.|.+|.+++|++|||+|+||++++|||+|+-+. |. +|++...
T Consensus 23 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 73 (247)
T 2ra5_A 23 QQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR 73 (247)
T ss_dssp ---------------------------------------------CEEEEE
T ss_pred HHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 56889999999999999999999999999999997543 43 3666543
No 247
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=97.58 E-value=9.8e-06 Score=71.21 Aligned_cols=38 Identities=13% Similarity=-0.038 Sum_probs=32.5
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~ 39 (433)
+++++.|.+|.+++|++|||+|+||++++|||+|+-+.
T Consensus 16 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~A 53 (236)
T 3edp_A 16 SKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRA 53 (236)
T ss_dssp HHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999999999999999999999996543
No 248
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=97.46 E-value=1.8e-05 Score=69.87 Aligned_cols=37 Identities=19% Similarity=0.062 Sum_probs=33.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
+++++.|.+|.+++|++|||+|+||++++|||+|+-+
T Consensus 17 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~ 53 (243)
T 2wv0_A 17 EQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQ 53 (243)
T ss_dssp HHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHH
Confidence 4678899999999999999999999999999999644
No 249
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=97.44 E-value=1.9e-05 Score=70.86 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=38.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccccc---CC-CCCCcHH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK---LQ-AGYLFPE 48 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~---l~-~g~~~~~ 48 (433)
+.++++|.+|.+++|++|||+|+||++++|||+|+-+. |. +|++...
T Consensus 36 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 86 (272)
T 3eet_A 36 GDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR 86 (272)
T ss_dssp HHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 46789999999999999999999999999999997443 32 3666554
No 250
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=97.40 E-value=2.3e-05 Score=68.98 Aligned_cols=37 Identities=11% Similarity=-0.019 Sum_probs=33.7
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
+.+++.|.+|.+++|++|||+|+||++++|||+|+-+
T Consensus 12 ~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~ 48 (239)
T 3bwg_A 12 TEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITK 48 (239)
T ss_dssp HHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHH
Confidence 4578899999999999999999999999999999644
No 251
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=97.24 E-value=3.6e-05 Score=67.02 Aligned_cols=35 Identities=11% Similarity=-0.078 Sum_probs=32.5
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++|+++|.+|+++||++|| +++||++|||||+|+-
T Consensus 23 ~~l~~~I~~g~l~pG~~L~-E~~La~~lgVSRtpVR 57 (222)
T 3ihu_A 23 FGIMSGLELGTFVPGQRLV-ETDLVAHFGVGRNSVR 57 (222)
T ss_dssp HHHHHHHHHTSSCTTCEEC-HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhCCCCCCCccC-HHHHHHHHCCCHHHHH
Confidence 4688999999999999999 9999999999999953
No 252
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=97.10 E-value=7.3e-05 Score=66.14 Aligned_cols=44 Identities=18% Similarity=0.018 Sum_probs=35.7
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccc---cCC-CCCCcH
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG---KLQ-AGYLFP 47 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~---~l~-~g~~~~ 47 (433)
+.+++.|. | +++|++|||+|+||++++|||+|+-+ .|. +|++..
T Consensus 21 ~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 21 AELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp HHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 45788898 8 99999999999999999999999643 332 366654
No 253
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=97.06 E-value=6.6e-05 Score=56.24 Aligned_cols=33 Identities=12% Similarity=-0.047 Sum_probs=30.7
Q ss_pred cccccccccccccCCChhhHHHHHhccccccccc
Q 045431 5 WVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 5 ~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
+.+|. |.+++|++|||+++||+.++||++|+..
T Consensus 30 ~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~ 62 (102)
T 2b0l_A 30 IEHIF-EELDGNEGLLVASKIADRVGITRSVIVN 62 (102)
T ss_dssp HHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHH
T ss_pred HHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHH
Confidence 88899 9999999999999999999999999644
No 254
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=96.97 E-value=9.9e-05 Score=64.04 Aligned_cols=35 Identities=6% Similarity=-0.226 Sum_probs=32.3
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++++++|.+|.++||++| |+++||+++||||+|+-
T Consensus 19 ~~l~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVR 53 (218)
T 3sxy_A 19 NLLKEMILNHELKLGEKL-NVRELSEKLGISFTPVR 53 (218)
T ss_dssp HHHHHHHHTTSSCTTCEE-CHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhCCCCCCCEe-CHHHHHHHHCCCHHHHH
Confidence 468899999999999999 89999999999999963
No 255
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=96.74 E-value=0.00018 Score=63.29 Aligned_cols=35 Identities=17% Similarity=-0.081 Sum_probs=32.2
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++|++.|.+|+++||++| ++++||++|||||+|+-
T Consensus 35 ~~l~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVR 69 (239)
T 2hs5_A 35 GILRDAIIDGTFRPGARL-SEPDICAALDVSRNTVR 69 (239)
T ss_dssp HHHHHHHHHTSSCTTCEE-CHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHcCCCCCcCEe-CHHHHHHHHCCCHHHHH
Confidence 468899999999999999 79999999999999963
No 256
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=96.41 E-value=0.00054 Score=60.08 Aligned_cols=35 Identities=17% Similarity=-0.036 Sum_probs=32.3
Q ss_pred ccccccccccccccccCCChhhHHHHHhcccccccc
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~ 37 (433)
++|+..|.+|.|+||++| ++++||++||||++|+-
T Consensus 33 ~~L~~~I~~g~l~pG~~L-~e~~La~~lgVSr~~VR 67 (237)
T 3c7j_A 33 EKLRNAIIDGSLPSGTAL-RQQELATLFGVSRMPVR 67 (237)
T ss_dssp HHHHHHHHTSSSCTTCBC-CHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhCCCCCcCee-CHHHHHHHHCCCHHHHH
Confidence 468899999999999999 79999999999999964
No 257
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=93.25 E-value=0.05 Score=50.50 Aligned_cols=33 Identities=18% Similarity=-0.090 Sum_probs=0.0
Q ss_pred ccccccccccCCChhhHHHHHhccccccccccC
Q 045431 8 AKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 8 ~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l 40 (433)
++.|.+++|+|+|+++++|+..|||++|+-..|
T Consensus 1 ~~~g~~~~g~~~~ti~diA~~agVS~~TVSr~L 33 (355)
T 3e3m_A 1 MSLDSRKPGHRPVTMRDVAKAAGVSRMTVSRAL 33 (355)
T ss_dssp ---------------------------------
T ss_pred CCCcCcCCCCCCCcHHHHHHHhCCCHHHHHHHH
Confidence 467999999999999999999999999976555
No 258
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=89.06 E-value=0.054 Score=44.14 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=31.3
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccccC
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l 40 (433)
+.++.+|-+ .|++|.+| |.++||+.+|||++|+...+
T Consensus 12 d~l~~~Il~-~l~~~~~l-s~~eLa~~lgvSr~~vr~al 48 (163)
T 2gqq_A 12 DRIDRNILN-ELQKDGRI-SNVELSKRVGLSPTPCLERV 48 (163)
T ss_dssp CSHHHHHHH-HHHHCSSC-CTTGGGTSSSCCTTTSSSTH
T ss_pred hHHHHHHHH-HHHhCCCC-CHHHHHHHHCcCHHHHHHHH
Confidence 356677888 99999999 79999999999999976543
No 259
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=87.82 E-value=1.3 Score=40.44 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=25.2
Q ss_pred ccccCCChhhHHHHHhccccccccccCC-CCCCcHHHHHH
Q 045431 14 CKCVAAPQEEKIAYKTKVSRNGNLGKLQ-AGYLFPEIARR 52 (433)
Q Consensus 14 ~~g~~LPs~r~la~~~~vs~~t~~~~l~-~g~~~~~~~~~ 52 (433)
++++|.|+++++|+..|||++|+-..|. .+.+..+..++
T Consensus 5 ~~~~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~r 44 (344)
T 3kjx_A 5 ADTKRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRAR 44 (344)
T ss_dssp -----CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHH
T ss_pred ccCCCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 5788999999999999999999765543 24555554433
No 260
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=79.19 E-value=1.9 Score=39.29 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=0.0
Q ss_pred cCCChhhHHHHHhccccccccccC
Q 045431 17 VAAPQEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 17 ~~LPs~r~la~~~~vs~~t~~~~l 40 (433)
.+.|+++++|+..|||++|+-..|
T Consensus 4 ~~~~ti~diA~~agVS~~TVSr~L 27 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRAL 27 (333)
T ss_dssp ------------------------
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHH
Confidence 578999999999999999976554
No 261
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=71.43 E-value=0.43 Score=35.62 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=27.1
Q ss_pred cccccccccccccCCChhhHHHHHhcccccccccc
Q 045431 5 WVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 5 ~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~ 39 (433)
+.+|-.+.+++|++ ++.++||+.+|||++|+...
T Consensus 20 ~l~Il~~l~~~g~~-~s~~eLa~~lgvs~~tV~~~ 53 (110)
T 1q1h_A 20 VIDVLRILLDKGTE-MTDEEIANQLNIKVNDVRKK 53 (110)
T ss_dssp THHHHHHHHHHCSC-BCHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHCcCHHHHHHH
Confidence 34566677789988 48999999999999997544
No 262
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=67.27 E-value=1.2 Score=27.46 Aligned_cols=22 Identities=5% Similarity=-0.022 Sum_probs=18.8
Q ss_pred ChhhHHHHHhccccccccccCC
Q 045431 20 PQEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 20 Ps~r~la~~~~vs~~t~~~~l~ 41 (433)
-|.+++|..+|||++|++..+.
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 3799999999999999876554
No 263
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=66.79 E-value=1.3 Score=30.60 Aligned_cols=19 Identities=16% Similarity=-0.027 Sum_probs=16.8
Q ss_pred CChhhHHHHHhcccccccc
Q 045431 19 APQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 19 LPs~r~la~~~~vs~~t~~ 37 (433)
-||.|+||+.+|||.+|+-
T Consensus 24 ~psv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVR 42 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 4999999999999988853
No 264
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.54 E-value=8.2 Score=34.83 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCChhhHHHHHhccccccccccC
Q 045431 18 AAPQEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 18 ~LPs~r~la~~~~vs~~t~~~~l 40 (433)
++|+++++|+..|||++|+-..|
T Consensus 2 ~~~ti~diA~~agVS~~TVSrvl 24 (338)
T 3dbi_A 2 SLTTMLEVAKRAGVSKATVSRVL 24 (338)
T ss_dssp -----------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHH
Confidence 47899999999999999975544
No 265
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=62.00 E-value=10 Score=34.26 Aligned_cols=24 Identities=17% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CCChhhHHHHHhccccccccccCC
Q 045431 18 AAPQEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 18 ~LPs~r~la~~~~vs~~t~~~~l~ 41 (433)
|.|+++++|+..|||++|+-..|.
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln 26 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLN 26 (339)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Confidence 578999999999999999765553
No 266
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=61.07 E-value=10 Score=34.53 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=0.0
Q ss_pred cCCChhhHHHHHhccccccccccCC
Q 045431 17 VAAPQEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 17 ~~LPs~r~la~~~~vs~~t~~~~l~ 41 (433)
.++|+++++|+..|||++|+-..|.
T Consensus 6 ~~~~ti~dvA~~aGVS~~TVSrvLn 30 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALA 30 (348)
T ss_dssp -------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHC
Confidence 3579999999999999999765443
No 267
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=60.47 E-value=3.3 Score=32.07 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCEEEEeccccc
Q 045431 225 EQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 225 ~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
.--.+|.++|+++|++|++|-.-+.
T Consensus 81 ~~A~~I~e~A~e~gVPi~e~~~LAr 105 (137)
T 3bzs_A 81 AKALQIIKLAELYDIPVIEDIPLAR 105 (137)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHH
Confidence 4468899999999999999976543
No 268
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=59.94 E-value=2.4 Score=30.94 Aligned_cols=17 Identities=0% Similarity=-0.077 Sum_probs=15.1
Q ss_pred hhhHHHHHhcccccccc
Q 045431 21 QEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~ 37 (433)
++|++|+.+|+|++|+.
T Consensus 60 TQREIA~~lGiS~stIS 76 (101)
T 1jhg_A 60 SQRELKNELGAGIATIT 76 (101)
T ss_dssp CHHHHHHHHCCCHHHHH
T ss_pred CHHHHHHHHCCChhhhh
Confidence 59999999999999853
No 269
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=59.79 E-value=4.9 Score=30.47 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCEEEEeccccc
Q 045431 225 EQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 225 ~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
.--.+|.++|+++|++|++|-.-+.
T Consensus 71 ~~A~~I~~~A~e~~VPi~e~~~LAr 95 (123)
T 2jli_A 71 AQVQTVRKIAEEEGVPILQRIPLAR 95 (123)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHH
Confidence 4568999999999999999976543
No 270
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=59.07 E-value=2.4 Score=25.63 Aligned_cols=18 Identities=17% Similarity=-0.010 Sum_probs=16.1
Q ss_pred hhhHHHHHhccccccccc
Q 045431 21 QEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~~ 38 (433)
|.+++|+.++||++|++.
T Consensus 23 s~~~IA~~lgis~~Tv~~ 40 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIRV 40 (51)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHH
Confidence 699999999999999764
No 271
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=58.85 E-value=22 Score=31.77 Aligned_cols=31 Identities=13% Similarity=-0.011 Sum_probs=22.2
Q ss_pred ChhhHHHHHhccccccccccCC-CCCCcHHHH
Q 045431 20 PQEEKIAYKTKVSRNGNLGKLQ-AGYLFPEIA 50 (433)
Q Consensus 20 Ps~r~la~~~~vs~~t~~~~l~-~g~~~~~~~ 50 (433)
|+++++|+..|||++|+-..|. .+.+..+..
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~~~~vs~~tr 34 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNGNPNVKPSTR 34 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH
Confidence 7899999999999999755443 244544433
No 272
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=57.93 E-value=4.8 Score=31.47 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCEEEEecccc
Q 045431 225 EQLTRLVQFAKDNGSIIVYDSAYA 248 (433)
Q Consensus 225 ~~~~~i~~~a~~~~~~li~De~~~ 248 (433)
.--.+|.++|+++|++|++|-.-+
T Consensus 80 ~~A~~I~e~A~e~gVPi~e~~~LA 103 (144)
T 2jlj_A 80 AQVQTVRKIAEEEGVPILQRIPLA 103 (144)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHH
Confidence 446889999999999999997654
No 273
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=57.05 E-value=20 Score=32.40 Aligned_cols=22 Identities=14% Similarity=-0.120 Sum_probs=0.0
Q ss_pred CChhhHHHHHhccccccccccC
Q 045431 19 APQEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 19 LPs~r~la~~~~vs~~t~~~~l 40 (433)
.|+++++|+..|||++|+-..|
T Consensus 3 ~~ti~diA~~aGVS~~TVSrvL 24 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVV 24 (349)
T ss_dssp ----------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHH
Confidence 4789999999999999975544
No 274
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=54.69 E-value=51 Score=31.29 Aligned_cols=96 Identities=9% Similarity=0.168 Sum_probs=57.1
Q ss_pred CCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChhhhhhHHHhCCcccccccccccceEEEeecCccCCcccCCCCC
Q 045431 124 IEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMGQTGEFQKDAEKYGKIEYMRCTAENGFFPDLSTV 203 (433)
Q Consensus 124 ~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (433)
+....|++..|+..+...+..+++.|-.|.+.+|....-...+...+ .+..+.- .+.. ...
T Consensus 10 l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~-------------~i~~~~~----~~~~--~~l 70 (457)
T 1pjq_A 10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEG-------------MLTLVEG----PFDE--TLL 70 (457)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTT-------------SCEEEES----SCCG--GGG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcC-------------CEEEEEC----CCCc--ccc
Confidence 44467888899999998888888899888888886544222211112 1222211 1111 111
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEE-EEecc
Q 045431 204 ARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSII-VYDSA 246 (433)
Q Consensus 204 ~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~l-i~De~ 246 (433)
.+..+|+ ..|.+| +.-..+.+.|+++++++ ++|+.
T Consensus 71 ~~~~lVi-~at~~~-------~~n~~i~~~a~~~~i~vn~~d~~ 106 (457)
T 1pjq_A 71 DSCWLAI-AATDDD-------TVNQRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp TTCSEEE-ECCSCH-------HHHHHHHHHHHHTTCEEEETTCT
T ss_pred CCccEEE-EcCCCH-------HHHHHHHHHHHHcCCEEEECCCc
Confidence 2444444 455553 22478999999999987 56665
No 275
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=54.19 E-value=2.3 Score=26.76 Aligned_cols=19 Identities=21% Similarity=0.024 Sum_probs=16.7
Q ss_pred hhhHHHHHhcccccccccc
Q 045431 21 QEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~~~ 39 (433)
|.+++|+.++||++|++..
T Consensus 33 s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 33 TVQQIANALGVSERKVRRY 51 (55)
T ss_dssp CHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 7999999999999997643
No 276
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=51.72 E-value=72 Score=26.89 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=31.6
Q ss_pred CCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCChh
Q 045431 123 GIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSYPA 161 (433)
Q Consensus 123 ~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~~~ 161 (433)
.+....|++..|+..+...+..+++.|-.|.+.+|....
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~ 66 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSA 66 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCH
Confidence 456678999999988888888888889888888887644
No 277
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=51.54 E-value=5.2 Score=27.84 Aligned_cols=24 Identities=8% Similarity=-0.046 Sum_probs=19.6
Q ss_pred ccccCCChhhHHHHHhccccccccc
Q 045431 14 CKCVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 14 ~~g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
+||+++. ..+||+.|+||++|+-.
T Consensus 23 ~pg~~~t-~~eLA~~Lgvsr~tV~~ 46 (81)
T 1qbj_A 23 GEGKATT-AHDLSGKLGTPKKEINR 46 (81)
T ss_dssp CTTCCBC-HHHHHHHHTCCHHHHHH
T ss_pred CCCCCcC-HHHHHHHHCcCHHHHHH
Confidence 4677776 89999999999988643
No 278
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=51.17 E-value=9.1 Score=26.73 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYA 248 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~ 248 (433)
...-.+|.++|+++|++|++|-.-+
T Consensus 26 ~~~A~~I~~~A~e~~VPi~e~~~LA 50 (83)
T 3bzy_B 26 DAKALQIIKLAELYDIPVIEDIPLA 50 (83)
T ss_dssp THHHHHHHHHHHHTTCCEEECHHHH
T ss_pred cHHHHHHHHHHHHcCCCEEeCHHHH
Confidence 3446899999999999999997644
No 279
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=50.19 E-value=1.5 Score=29.98 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=20.2
Q ss_pred ccccccCCChhhHHHHHhccccccc
Q 045431 12 SVCKCVAAPQEEKIAYKTKVSRNGN 36 (433)
Q Consensus 12 ~l~~g~~LPs~r~la~~~~vs~~t~ 36 (433)
.|++|+..+ ..++|.+||+++.++
T Consensus 23 ~L~~~~~~T-a~~IAkkLg~sK~~v 46 (75)
T 1sfu_A 23 SLNTNDYTT-AISLSNRLKINKKKI 46 (75)
T ss_dssp TSCTTCEEC-HHHHHHHTTCCHHHH
T ss_pred hCCCCcchH-HHHHHHHHCCCHHHH
Confidence 678888877 789999999999763
No 280
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=50.10 E-value=20 Score=32.54 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=33.2
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
.+|.|...+.+++.++++.|+++|+-|++|-.|++...+
T Consensus 50 ~~P~~g~~~~~~~~~~~~~A~~~GlkV~ld~Hysd~Wad 88 (332)
T 1hjs_A 50 VNPADGNYNLDYNIAIAKRAKAAGLGVYIDFHYSDTWAD 88 (332)
T ss_dssp SSCTTCTTSHHHHHHHHHHHHHTTCEEEEEECCSSSCCB
T ss_pred eCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeccCCCcCC
Confidence 677788889999999999999999999999877765544
No 281
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=48.83 E-value=5 Score=26.53 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=15.4
Q ss_pred ChhhHHHHHhcccccccc
Q 045431 20 PQEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 20 Ps~r~la~~~~vs~~t~~ 37 (433)
++++++|+.+|||++|+.
T Consensus 1 ~T~~diA~~aGVS~sTVS 18 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTAS 18 (65)
T ss_dssp CCHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHH
Confidence 368999999999999854
No 282
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=48.81 E-value=5.9 Score=36.35 Aligned_cols=27 Identities=19% Similarity=0.022 Sum_probs=20.7
Q ss_pred cccccCCChhhHHHHHhcccccccccc
Q 045431 13 VCKCVAAPQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 13 l~~g~~LPs~r~la~~~~vs~~t~~~~ 39 (433)
+.++.+.|+++++|+..|||++|+-..
T Consensus 3 ~~~~~~~~Ti~diA~~aGVS~~TVSrv 29 (366)
T 3h5t_A 3 LGRKQQYGTLASIAAKLGISRTTVSNA 29 (366)
T ss_dssp ----CCTTHHHHHHHHHTSCHHHHHHH
T ss_pred CCccCCCCCHHHHHHHhCCCHHHHHHH
Confidence 567889999999999999999996543
No 283
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=47.46 E-value=2.4 Score=33.55 Aligned_cols=27 Identities=4% Similarity=-0.333 Sum_probs=21.8
Q ss_pred cccccccccccccccCCChhhHHHHHhc--------------cccccc
Q 045431 3 NAWVQAKRISVCKCVAAPQEEKIAYKTK--------------VSRNGN 36 (433)
Q Consensus 3 ~~~~~~~~g~l~~g~~LPs~r~la~~~~--------------vs~~t~ 36 (433)
.+|..|.+| ++|+ |+||+.+| ||++|+
T Consensus 58 ~lr~~i~~g--~~G~-----~~La~~~gg~k~~g~~p~~~~~vSr~tV 98 (150)
T 2v7f_A 58 ILRRVYLDG--PVGI-----ERLRTYYGGRKNRGHAPERFYKAGGSII 98 (150)
T ss_dssp HHHHHHHHC--SBCH-----HHHHHHHCC----CCCTTSCCCHHHHHH
T ss_pred HHHHHHHhC--CCCH-----HHHHHHHCCCccCCcCCccccccchHHH
Confidence 467777788 6665 99999999 888885
No 284
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=47.10 E-value=24 Score=31.97 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=33.3
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 215 NNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 215 ~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
.||.+...+.++..++++.|+++|+.+++|-.|++...+
T Consensus 50 v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ld~hysd~wad 88 (334)
T 1fob_A 50 VNPSDGSYDLDYNLELAKRVKAAGMSLYLDLHLSDTWAD 88 (334)
T ss_dssp SCCTTCTTCHHHHHHHHHHHHHTTCEEEEEECCSSSCCB
T ss_pred ECCCCCccCHHHHHHHHHHHHHCCCEEEEEeccCCCCCC
Confidence 567788889999999999999999999999877765444
No 285
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=45.21 E-value=19 Score=23.80 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=17.7
Q ss_pred CChhhHHHHHhcccccccccc
Q 045431 19 APQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 19 LPs~r~la~~~~vs~~t~~~~ 39 (433)
.++++++|+..|||++|+..-
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ 29 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRA 29 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 478999999999999996543
No 286
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=44.35 E-value=13 Score=26.51 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYA 248 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~ 248 (433)
...-.+|.++|+++|++|++|-.-+
T Consensus 26 ~~~A~~I~e~A~e~gVPi~e~~~LA 50 (93)
T 2vt1_B 26 NQCALAVRKYANEVGIPTVRDVKLA 50 (93)
T ss_dssp HHHHHHHHHHHHHTTCCEEECHHHH
T ss_pred cHHHHHHHHHHHHcCCCEEECHHHH
Confidence 4556899999999999999997544
No 287
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=43.85 E-value=18 Score=34.31 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=25.0
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEE
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIV 242 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li 242 (433)
+|.|..|+.+++++|++.|+++||-||
T Consensus 86 ~~~~~~YT~~di~eIv~YA~~rgI~VI 112 (442)
T 2yl5_A 86 DPNGTALTQAEVTELIEYAKSKDIGLI 112 (442)
T ss_dssp CTTCSCBCHHHHHHHHHHHHTTTCEEE
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCeee
Confidence 466889999999999999999999999
No 288
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=43.42 E-value=13 Score=26.88 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYA 248 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~ 248 (433)
.+.-.+|.++|+++|+++++|..-+
T Consensus 41 ~~~A~~I~~~A~e~gVPi~e~~~LA 65 (97)
T 3t7y_A 41 NLRAKRIIAEAEKYGVPIMRNVPLA 65 (97)
T ss_dssp HHHHHHHHHHHHHHTCCEEECHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEECHHHH
Confidence 4556899999999999999997644
No 289
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=42.41 E-value=20 Score=32.17 Aligned_cols=24 Identities=13% Similarity=-0.047 Sum_probs=0.0
Q ss_pred CCChhhHHHHHhccccccccccCC
Q 045431 18 AAPQEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 18 ~LPs~r~la~~~~vs~~t~~~~l~ 41 (433)
+.|+++++|+..|||++|+-..|.
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln 27 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVN 27 (332)
T ss_dssp ------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHc
Confidence 358999999999999999765443
No 290
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=41.94 E-value=14 Score=26.75 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYA 248 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~ 248 (433)
...-.+|.++|+++|++|++|-.-+
T Consensus 26 ~~~A~~I~e~A~e~gVPi~e~~~LA 50 (98)
T 3c01_E 26 NQRALAVRAYAEKVGVPVIVDIKLA 50 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEECHHHH
T ss_pred cHHHHHHHHHHHHcCCCeecCHHHH
Confidence 4456899999999999999997544
No 291
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=41.41 E-value=7.3 Score=25.19 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=15.2
Q ss_pred hhhHHHHHhcccccccc
Q 045431 21 QEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~ 37 (433)
++.+||+.+|||++++.
T Consensus 12 tq~~lA~~lGvs~~~Vs 28 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVS 28 (61)
T ss_dssp SHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHhCCCHHHHH
Confidence 79999999999998863
No 292
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=40.25 E-value=30 Score=31.08 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=21.0
Q ss_pred ChhhHHHHHhccccccccccCC-CCCCcHHH
Q 045431 20 PQEEKIAYKTKVSRNGNLGKLQ-AGYLFPEI 49 (433)
Q Consensus 20 Ps~r~la~~~~vs~~t~~~~l~-~g~~~~~~ 49 (433)
++++++|+..|||++|+-..|. .+.+..+.
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn~~~~vs~~t 31 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKTRFVAEET 31 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCSCCCHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCcCCCCHHH
Confidence 4689999999999999754442 24444443
No 293
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=39.85 E-value=43 Score=29.30 Aligned_cols=37 Identities=14% Similarity=0.398 Sum_probs=29.9
Q ss_pred CCCCCcEEEcCChHHHHHHHHHhcCCCCEEEEeCCCC
Q 045431 123 GIEEGDIFVSDGAKCDISRLQIVFGSNVTMAVQDPSY 159 (433)
Q Consensus 123 ~~~~~~i~~~~G~~~al~~l~~l~~~gd~Vl~~~p~~ 159 (433)
.+....|++..|+..+...+..+++.|-.|.+.+|..
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3455678888899999988999999998888877755
No 294
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=39.55 E-value=19 Score=34.06 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=24.6
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEE
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIV 242 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li 242 (433)
+|.|..|+.+++++|++.|+++||-||
T Consensus 83 ~~~~~~YT~~di~eIv~YA~~rgI~VI 109 (434)
T 2yl6_A 83 DPNGNHLTESQMTDLINYAKDKGIGLI 109 (434)
T ss_dssp CTTCSCEEHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEE
Confidence 356778999999999999999999999
No 295
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=38.83 E-value=71 Score=28.06 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSA 246 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~ 246 (433)
.+.+++++++|.++|+.+|+|-.
T Consensus 64 ~~~ld~~v~~a~~~Gi~Vild~h 86 (302)
T 1bqc_A 64 PSDVANVISLCKQNRLICMLEVH 86 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEG
T ss_pred HHHHHHHHHHHHHCCCEEEEEec
Confidence 57899999999999999999954
No 296
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=37.81 E-value=20 Score=36.50 Aligned_cols=28 Identities=11% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
.++++++++.|+++|+-||.|-++....
T Consensus 315 ~~dfk~LV~~aH~~GI~VIlDvV~NHt~ 342 (718)
T 2e8y_A 315 KTELKQMINTLHQHGLRVILDVVFNHVY 342 (718)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence 6899999999999999999999987543
No 297
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=36.33 E-value=25 Score=33.46 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
+.++++++++-|+++|+-||.|-++....
T Consensus 75 t~~df~~lv~~aH~~Gi~VilD~V~NH~~ 103 (496)
T 4gqr_A 75 NEDEFRNMVTRCNNVGVRIYVDAVINHMC 103 (496)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcCC
Confidence 48999999999999999999999887643
No 298
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=36.16 E-value=8.4 Score=25.99 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=15.0
Q ss_pred hhhHHHHHhcccccccc
Q 045431 21 QEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~ 37 (433)
++.+||+.+|||+.+++
T Consensus 12 ~~~~lA~~lGVs~~aVs 28 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVY 28 (71)
T ss_dssp SHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHCCCHHHHH
Confidence 48899999999999974
No 299
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=35.86 E-value=5.6 Score=25.81 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.2
Q ss_pred hhhHHHHHhccccccccccCCC
Q 045431 21 QEEKIAYKTKVSRNGNLGKLQA 42 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~~~l~~ 42 (433)
...+.|+.||+|++|.|.+++.
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk 56 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQ 56 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHH
Confidence 5778999999999998876653
No 300
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=35.09 E-value=9.9 Score=25.15 Aligned_cols=20 Identities=10% Similarity=-0.137 Sum_probs=16.4
Q ss_pred hhhHHHHHhccccccccccC
Q 045431 21 QEEKIAYKTKVSRNGNLGKL 40 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~~~l 40 (433)
+..++|+.||||++|++.-.
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~ 23 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQ 23 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 56899999999999976433
No 301
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=34.37 E-value=8.2 Score=25.43 Aligned_cols=23 Identities=9% Similarity=-0.103 Sum_probs=19.2
Q ss_pred cCCChhhHHHHHhcccccccccc
Q 045431 17 VAAPQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 17 ~~LPs~r~la~~~~vs~~t~~~~ 39 (433)
++|=...++|+.+|||++|+|..
T Consensus 8 ~~~l~~~eva~~lgvsrstiy~~ 30 (66)
T 1z4h_A 8 DSLVDLKFIMADTGFGKTFIYDR 30 (66)
T ss_dssp SSEECHHHHHHHHSSCHHHHHHH
T ss_pred ccccCHHHHHHHHCcCHHHHHHH
Confidence 45667889999999999998853
No 302
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=34.36 E-value=27 Score=35.44 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++.|+++|+-||.|-+|...
T Consensus 254 ~~efk~lV~~~H~~Gi~VilDvV~NH~ 280 (714)
T 2ya0_A 254 IAEFKNLINEIHKRGMGAILDVVYNHT 280 (714)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTBC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCcc
Confidence 799999999999999999999988754
No 303
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=32.05 E-value=36 Score=32.21 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
.++++++++-|+++|+-||.|-++....
T Consensus 64 ~~dfk~Lv~~aH~~Gi~VilD~V~NH~~ 91 (448)
T 1g94_A 64 RAQFIDMVNRCSAAGVDIYVDTLINHMA 91 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeecccc
Confidence 8999999999999999999999987543
No 304
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=37.85 E-value=9.9 Score=26.80 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCEEEEeccccc
Q 045431 227 LTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 227 ~~~i~~~a~~~~~~li~De~~~~ 249 (433)
-.+|.++|+++|++|++|-.-+.
T Consensus 29 A~~I~e~A~e~~VPi~e~~~LAr 51 (87)
T 3b1s_B 29 AQKIVEIAENYSIPVVRKPELAR 51 (87)
Confidence 58899999999999999986654
No 305
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=31.54 E-value=71 Score=29.70 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 222 ATREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 222 ~~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
.+.+++.++++.|+++|+-|+.|-.|++++.+
T Consensus 86 ~d~~~~~~~a~~Ak~~GLkVlldfHysD~Wad 117 (399)
T 1ur4_A 86 NDLEKAIQIGKRATANGMKLLADFHYSDFWAD 117 (399)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECSSSSCCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeccCCccCC
Confidence 57889999999999999999999888876554
No 306
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=31.46 E-value=7.1 Score=32.36 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=24.0
Q ss_pred ccCCChhhHHHHHhccccccccccC---C-CCCCcHH
Q 045431 16 CVAAPQEEKIAYKTKVSRNGNLGKL---Q-AGYLFPE 48 (433)
Q Consensus 16 g~~LPs~r~la~~~~vs~~t~~~~l---~-~g~~~~~ 48 (433)
...-||.|+||+.+++|++|+...+ + .||+...
T Consensus 21 ~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 21 NGYPPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred hCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 3456999999999999998865433 2 3776543
No 307
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=30.66 E-value=44 Score=31.05 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
+.++++++++.|+++|+-||.|-++....
T Consensus 67 t~~d~~~lv~~~h~~Gi~VilD~V~NH~~ 95 (405)
T 1ht6_A 67 NAAELKSLIGALHGKGVQAIADIVINHRC 95 (405)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCccc
Confidence 38999999999999999999999887543
No 308
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=30.27 E-value=46 Score=31.32 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++.|+++|+-||.|-++...
T Consensus 69 ~~df~~lv~~aH~~Gi~VilD~V~NH~ 95 (441)
T 1lwj_A 69 EREFKEMIEAFHDSGIKVVLDLPIHHT 95 (441)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTBC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 899999999999999999999887643
No 309
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=29.00 E-value=48 Score=31.17 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
+.++++++++-|+++|+-||.|-++....
T Consensus 85 t~~df~~lv~~~H~~Gi~VilD~V~NH~~ 113 (435)
T 1mxg_A 85 SKEELVRLIQTAHAYGIKVIADVVINHRA 113 (435)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 48999999999999999999998876543
No 310
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=28.98 E-value=41 Score=32.77 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=24.6
Q ss_pred CccccCCCHHHHHHHHHHHHHcCCEEE
Q 045431 216 NPTGAAATREQLTRLVQFAKDNGSIIV 242 (433)
Q Consensus 216 nPtG~~~~~~~~~~i~~~a~~~~~~li 242 (433)
.|.|..|+.+++++|++.|+++||-||
T Consensus 215 ~~~~g~YT~~di~eIv~YA~~rgI~VI 241 (543)
T 3rcn_A 215 RPHGGFYTQDDLREIVAFAADRHITVI 241 (543)
T ss_dssp CCEECCBCHHHHHHHHHHHHHTTCEEE
T ss_pred CccCCCcCHHHHHHHHHHHHHcCCEEe
Confidence 355788999999999999999999998
No 311
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=28.81 E-value=51 Score=31.93 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYIS 252 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~ 252 (433)
.++++++++-|+++|+-||.|-++.....
T Consensus 92 ~~dfk~Lv~~aH~~GI~VilD~V~NHt~~ 120 (527)
T 1gcy_A 92 DAQLRQAASALGGAGVKVLYDVVPNHMNR 120 (527)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeecCcCC
Confidence 89999999999999999999999876443
No 312
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=28.33 E-value=15 Score=25.72 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=16.0
Q ss_pred hhhHHHHHhccccccccc
Q 045431 21 QEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~~ 38 (433)
|.+++|..+|||++|++.
T Consensus 40 s~~~iA~~~gIs~sTl~r 57 (87)
T 2elh_A 40 SKASVARDIGVPESTLRG 57 (87)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHH
Confidence 689999999999999764
No 313
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=27.60 E-value=16 Score=24.93 Aligned_cols=22 Identities=9% Similarity=-0.038 Sum_probs=17.1
Q ss_pred ccCCChhhHHHHHhccccccccc
Q 045431 16 CVAAPQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 16 g~~LPs~r~la~~~~vs~~t~~~ 38 (433)
|++++ ..+||+.++||++|+..
T Consensus 29 ~~~~t-~~eLA~~Lgvs~~tV~~ 50 (77)
T 1qgp_A 29 GKATT-AHDLSGKLGTPKKEINR 50 (77)
T ss_dssp SSCEE-HHHHHHHHCCCHHHHHH
T ss_pred CCCcC-HHHHHHHHCcCHHHHHH
Confidence 44554 89999999999988643
No 314
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=27.55 E-value=38 Score=35.91 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++.|+++|+-||.|-+|...
T Consensus 561 ~~efk~lV~~~H~~GI~VIlDvV~NHt 587 (1014)
T 2ya1_A 561 IAEFKNLINEIHKRGMGAILDVVYNHT 587 (1014)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecccc
Confidence 689999999999999999999998754
No 315
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=27.52 E-value=17 Score=24.61 Aligned_cols=20 Identities=0% Similarity=-0.172 Sum_probs=16.5
Q ss_pred ChhhHHHHHhcccccccccc
Q 045431 20 PQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 20 Ps~r~la~~~~vs~~t~~~~ 39 (433)
-|+.+||+.+|||++|+...
T Consensus 23 lT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 23 LSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp CCHHHHHHHHSSCHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 46899999999999986543
No 316
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=27.40 E-value=20 Score=23.89 Aligned_cols=16 Identities=6% Similarity=-0.151 Sum_probs=14.0
Q ss_pred hhhHHHHHhccccccc
Q 045431 21 QEEKIAYKTKVSRNGN 36 (433)
Q Consensus 21 s~r~la~~~~vs~~t~ 36 (433)
|+.++|+.+|||++|+
T Consensus 26 tq~elA~~~gvs~~ti 41 (73)
T 3fmy_A 26 TQKEASEIFGGGVNAF 41 (73)
T ss_dssp CHHHHHHHHCSCTTHH
T ss_pred CHHHHHHHhCcCHHHH
Confidence 5899999999999884
No 317
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=27.39 E-value=54 Score=31.32 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYIS 252 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~ 252 (433)
.++++++++.|+++|+-||.|-++.....
T Consensus 97 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 125 (484)
T 2aaa_A 97 ADNLKSLSDALHARGMYLMVDVVPDHMGY 125 (484)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCB
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCcCC
Confidence 79999999999999999999998875443
No 318
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=27.35 E-value=9 Score=26.62 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=16.7
Q ss_pred hhHHHHHhccccccccccCCC
Q 045431 22 EEKIAYKTKVSRNGNLGKLQA 42 (433)
Q Consensus 22 ~r~la~~~~vs~~t~~~~l~~ 42 (433)
..+.|+.||+||+|.|.+++.
T Consensus 57 ~s~AA~~LGISR~TLyrKLkk 77 (81)
T 1umq_A 57 VSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 467889999999998876653
No 319
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=27.23 E-value=53 Score=31.22 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++-|+++|+-||.|-++...
T Consensus 96 ~~df~~lv~~~h~~Gi~VilD~V~NH~ 122 (475)
T 2z1k_A 96 NEALRHLLEVAHAHGVRVILDGVFNHT 122 (475)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 799999999999999999999887653
No 320
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=26.89 E-value=43 Score=30.80 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=22.2
Q ss_pred ccCCCHHHHHHHHHHHHHcCCEEE
Q 045431 219 GAAATREQLTRLVQFAKDNGSIIV 242 (433)
Q Consensus 219 G~~~~~~~~~~i~~~a~~~~~~li 242 (433)
+..|+.+++++|++.|+++||-||
T Consensus 89 ~g~YT~~di~eiv~YA~~rgI~VI 112 (367)
T 1yht_A 89 KPFLSYRQLDDIKAYAKAKGIELI 112 (367)
T ss_dssp CEEBCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEE
Confidence 457999999999999999999998
No 321
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=26.84 E-value=13 Score=33.26 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCChhhHHHHHhccccccccccCC
Q 045431 18 AAPQEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 18 ~LPs~r~la~~~~vs~~t~~~~l~ 41 (433)
++|+++++|+..|||++|+-..|.
T Consensus 1 ~~~ti~diA~~agVS~~TVSrvln 24 (330)
T 3ctp_A 1 SLANIREIAKRAGISIATVSRHLN 24 (330)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHc
Confidence 358999999999999999765553
No 322
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=26.76 E-value=58 Score=31.12 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++-|+++|+-||.|-++...
T Consensus 81 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 107 (488)
T 1wza_A 81 LEDFHKLVEAAHQRGIKVIIDLPINHT 107 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSBC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 899999999999999999999887643
No 323
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=26.61 E-value=10 Score=25.03 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=16.3
Q ss_pred hhhHHHHHhcccccccccc
Q 045431 21 QEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~~~ 39 (433)
|..+||+.+++|++|+...
T Consensus 27 s~~eLA~~lglsr~tv~~~ 45 (67)
T 2heo_A 27 AIFQLVKKCQVPKKTLNQV 45 (67)
T ss_dssp EHHHHHHHHCSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 5789999999999997654
No 324
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=26.47 E-value=47 Score=31.71 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++-|+++|+-||.|-++...
T Consensus 80 ~~df~~lv~~aH~~Gi~VilD~V~NH~ 106 (480)
T 1ud2_A 80 KAQLERAIGSLKSNDINVYGDVVMNHK 106 (480)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCcc
Confidence 899999999999999999999988754
No 325
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=26.37 E-value=64 Score=28.77 Aligned_cols=107 Identities=12% Similarity=0.100 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCCh---HHHHHHHHHhcCCC-CEEEEeCCCChh-----hhhhHHHhCCcccccc
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGA---KCDISRLQIVFGSN-VTMAVQDPSYPA-----YVDSSVIMGQTGEFQK 177 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~---~~al~~l~~l~~~g-d~Vl~~~p~~~~-----~~~~~~~~g~~~~~~~ 177 (433)
..+-|+++.+...+..+ ..-.|++..|+ .+++.+....-+-| |.|++..|.|.. -....+.+.
T Consensus 59 s~~Er~~v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~------- 130 (309)
T 3fkr_A 59 TDDERDVLTRTILEHVA-GRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYA------- 130 (309)
T ss_dssp CHHHHHHHHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHH-------
T ss_pred CHHHHHHHHHHHHHHhC-CCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHH-------
Confidence 35555555555432111 12347766554 45566554444445 889988897721 111111111
Q ss_pred cccccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH-cCCEEEEeccc
Q 045431 178 DAEKYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKD-NGSIIVYDSAY 247 (433)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~-~~~~li~De~~ 247 (433)
.+.+..+.-++++++|. ||..++.+.+.+|+ ++ .++.=|=||+-
T Consensus 131 ---------------------~va~a~~lPiilYn~P~--tg~~l~~~~~~~La---~~~pnIvgiK~~~~ 175 (309)
T 3fkr_A 131 ---------------------RVSDAIAIPIMVQDAPA--SGTALSAPFLARMA---REIEQVAYFXIETP 175 (309)
T ss_dssp ---------------------HHHHHCSSCEEEEECGG--GCCCCCHHHHHHHH---HHSTTEEEEEECSS
T ss_pred ---------------------HHHHhcCCCEEEEeCCC--CCCCCCHHHHHHHH---hhCCCEEEEECCCc
Confidence 01111134467778884 89999977666665 33 35665665543
No 326
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=26.37 E-value=53 Score=31.29 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
.++++++++.|+++|+-||.|-++....
T Consensus 97 ~~df~~lv~~~H~~Gi~VilD~V~NH~~ 124 (478)
T 2guy_A 97 ADDLKALSSALHERGMYLMVDVVANHMG 124 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccCC
Confidence 8999999999999999999998877543
No 327
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=26.15 E-value=48 Score=31.67 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++.|+++|+-||.|-++...
T Consensus 78 ~~df~~lv~~aH~~Gi~VilD~V~NH~ 104 (483)
T 3bh4_A 78 KSELQDAIGSLHSRNVQVYGDVVLNHK 104 (483)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCcc
Confidence 899999999999999999999988754
No 328
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=25.97 E-value=53 Score=31.68 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=35.5
Q ss_pred eEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEE
Q 045431 184 KIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIV 242 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li 242 (433)
+.......++.+|..+....+...- .-...|.|..|+.+++++|++.|+++||-||
T Consensus 177 N~lh~HltDdq~wr~ei~~~P~Lt~---~Ga~~~~~~~YT~~di~eiv~yA~~rgI~VI 232 (507)
T 2gjx_A 177 NVFHWHLVDDPSFPYESFTFPELMR---KGSYNPVTHIYTAQDVKEVIEYARLRGIRVL 232 (507)
T ss_dssp CEEEEECCCSSCCCBCCSSCTHHHH---HHSSCTTTSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred ceEEEEEecccCeeeeccccchhhh---ccccCCCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 5555555555556554443222100 0012344667999999999999999999998
No 329
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=25.96 E-value=50 Score=31.45 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
.++++++++.|+++|+-||.|-++....
T Consensus 74 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~ 101 (471)
T 1jae_A 74 ESAFTDMTRRCNDAGVRIYVDAVINHMT 101 (471)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence 8999999999999999999999887543
No 330
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=25.83 E-value=57 Score=32.14 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
.++++++++.|+++|+-||.|-++....
T Consensus 222 ~~df~~lv~~~H~~Gi~VilD~V~NH~~ 249 (588)
T 1j0h_A 222 KETLKTLIDRCHEKGIRVMLDAVFNHCG 249 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCcCc
Confidence 7999999999999999999999887543
No 331
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=25.75 E-value=57 Score=31.55 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=27.7
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCCEEEEeccccc
Q 045431 212 CSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 212 ~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
.+|+. | +.++++++++-|+++|+-||.|-++..
T Consensus 72 vdp~~--G---t~~dfk~Lv~~aH~~Gi~VilD~V~NH 104 (549)
T 4aie_A 72 IDPQY--G---TMADMDELISKAKEHHIKIVMDLVVNH 104 (549)
T ss_dssp ECTTT--C---CHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred cCccc--C---CHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 35554 5 379999999999999999999998865
No 332
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=25.73 E-value=49 Score=31.96 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
+.++++++++.|+++|+-||.|-++....
T Consensus 80 t~~dfk~Lv~~aH~~Gi~VilD~V~NH~~ 108 (515)
T 1hvx_A 80 TKAQYLQAIQAAHAAGMQVYADVVFDHKG 108 (515)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecCCcc
Confidence 38999999999999999999999887653
No 333
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=25.65 E-value=12 Score=24.03 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=19.9
Q ss_pred CCChhhHHHHHh-----ccccccccccCC
Q 045431 18 AAPQEEKIAYKT-----KVSRNGNLGKLQ 41 (433)
Q Consensus 18 ~LPs~r~la~~~-----~vs~~t~~~~l~ 41 (433)
.-++..+|++.+ +||..|+|..|.
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 457899999999 999999886543
No 334
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=25.52 E-value=50 Score=31.56 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++.|+++|+-||.|-++...
T Consensus 82 ~~df~~Lv~~aH~~Gi~VilD~V~NH~ 108 (485)
T 1wpc_A 82 RSQLQAAVTSLKNNGIQVYGDVVMNHK 108 (485)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 899999999999999999999988754
No 335
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=25.39 E-value=16 Score=28.89 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=16.2
Q ss_pred hhhHHHHHhccccccccc
Q 045431 21 QEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~~ 38 (433)
|..++|+.+|||++|.|.
T Consensus 50 Tv~eIA~~LGIS~~TLyr 67 (155)
T 2ao9_A 50 TQDEMANELGINRTTLWE 67 (155)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHH
Confidence 799999999999999764
No 336
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=25.35 E-value=49 Score=30.96 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecccccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYIS 252 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~ 252 (433)
+.++++++++.|+++|+-||.|-++.....
T Consensus 73 ~~~d~~~lv~~~h~~Gi~VilD~V~NH~~~ 102 (422)
T 1ua7_A 73 TEQEFKEMCAAAEEYGIKVIVDAVINHTTF 102 (422)
T ss_dssp EHHHHHHHHHHHHTTTCEEEEEECCSBCCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccCcccC
Confidence 489999999999999999999999876443
No 337
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=25.32 E-value=15 Score=29.05 Aligned_cols=39 Identities=5% Similarity=-0.049 Sum_probs=29.1
Q ss_pred ccccccccccccccCCChhhHHHHHhccccccccccCCC
Q 045431 4 AWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQA 42 (433)
Q Consensus 4 ~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l~~ 42 (433)
+-++..+=....|-.=-|.+++|+..|||++|.|....+
T Consensus 17 Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 55 (177)
T 3kkc_A 17 IYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYES 55 (177)
T ss_dssp HHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSS
T ss_pred HHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHcCC
Confidence 334444445567777778999999999999999976653
No 338
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=25.30 E-value=7.9 Score=31.44 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=28.3
Q ss_pred ccccccccccccccCCChhhHHHHHhccccccccccCC
Q 045431 4 AWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 4 ~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l~ 41 (433)
|-++..+=....|-. -|.+++|+..|||+.|.|....
T Consensus 20 Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tlY~~F~ 56 (194)
T 2q24_A 20 ILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLYRNFP 56 (194)
T ss_dssp HHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHHHHCC
T ss_pred HHHHHHHHHHhcCcC-CCHHHHHHHhCCChHHHHHHcC
Confidence 334444445567888 7999999999999999987654
No 339
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=24.79 E-value=60 Score=28.61 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCCh---HHHHHHHHHhcCCC-CEEEEeCCCChhhh--hhHHHhCCccccccccc
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGA---KCDISRLQIVFGSN-VTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAE 180 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~---~~al~~l~~l~~~g-d~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~ 180 (433)
..+-|+++.+...+..+ ..-.|++..|+ .+++.+....-+-| |.|++..|.|.... ...+.+.
T Consensus 52 s~~Er~~v~~~~~~~~~-gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~---------- 120 (291)
T 3a5f_A 52 TETERKETIKFVIDKVN-KRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFK---------- 120 (291)
T ss_dssp CHHHHHHHHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-----------
T ss_pred CHHHHHHHHHHHHHHhC-CCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHH----------
Confidence 34455555555432111 11247776665 55566554444445 88999999885421 1111111
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEEEec
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIVYDS 245 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li~De 245 (433)
.+.+..+..++++++|.. ||..++.+.+.+|++ -.++.=|=|.
T Consensus 121 ------------------~ia~a~~lPiilYn~P~~-tg~~l~~~~~~~La~---~pnivgiK~s 163 (291)
T 3a5f_A 121 ------------------AVSDAVSTPIIIYNVPGR-TGLNITPGTLKELCE---DKNIVAVXEA 163 (291)
T ss_dssp ------------------CTGGGCCSCEEEEECHHH-HSCCCCHHHHHHHTT---STTEEEEEEC
T ss_pred ------------------HHHHhcCCCEEEEeCccc-cCCCCCHHHHHHHHc---CCCEEEEeCC
Confidence 111112345677777754 899999888877753 2344444444
No 340
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=24.59 E-value=8.3 Score=31.10 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=29.5
Q ss_pred cccccccccccccccCCChhhHHHHHhccccccccccCC
Q 045431 3 NAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 3 ~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l~ 41 (433)
+|-++..+=....|-. -|.+++|++.|||+.|.|..+.
T Consensus 13 ~Il~aA~~lf~~~G~~-~t~~~IA~~aGvs~~tly~~F~ 50 (190)
T 3jsj_A 13 RLLEAAAALTYRDGVG-IGVEALCKAAGVSKRSMYQLFE 50 (190)
T ss_dssp HHHHHHHHHHHHHCTT-CCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHHHcC
Confidence 3344444555678889 9999999999999999987654
No 341
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=24.44 E-value=66 Score=31.64 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
.++++++++-|+++|+-||.|-++....
T Consensus 219 ~~dfk~lv~~~H~~Gi~VilD~V~NH~~ 246 (585)
T 1wzl_A 219 LPTFRRLVDEAHRRGIKIILDAVFNHAG 246 (585)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCcCC
Confidence 7999999999999999999998876543
No 342
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=24.38 E-value=59 Score=28.67 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCCh---HHHHHHHHHhcCCC-CEEEEeCCCChhhh--hhHHHhCCccccccccc
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGA---KCDISRLQIVFGSN-VTMAVQDPSYPAYV--DSSVIMGQTGEFQKDAE 180 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~---~~al~~l~~l~~~g-d~Vl~~~p~~~~~~--~~~~~~g~~~~~~~~~~ 180 (433)
..+-|+++.+...+..+ ..-.|++..|+ .+++.+....-+-| |.|++..|.|.... ...+.+.
T Consensus 52 s~~Er~~v~~~~~~~~~-gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~---------- 120 (292)
T 2ojp_A 52 NHDEHADVVMMTLDLAD-GRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFK---------- 120 (292)
T ss_dssp CHHHHHHHHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHHHhC-CCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHH----------
Confidence 34555555555432111 11247776665 45555555555556 88999999885421 1111111
Q ss_pred ccceEEEeecCccCCcccCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHH
Q 045431 181 KYGKIEYMRCTAENGFFPDLSTVARTDIIFFCSPNNPTGAAATREQLTRLVQ 232 (433)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~p~nPtG~~~~~~~~~~i~~ 232 (433)
.+.+..+..++++++|. .||..++.+.+.+|++
T Consensus 121 ------------------~ia~a~~lPiilYn~P~-~tg~~l~~~~~~~La~ 153 (292)
T 2ojp_A 121 ------------------AIAEHTDLPQILYNVPS-RTGCDLLPETVGRLAK 153 (292)
T ss_dssp ------------------HHHTTCSSCEEEECCHH-HHSCCCCHHHHHHHHT
T ss_pred ------------------HHHHhcCCCEEEEeCcc-hhccCCCHHHHHHHHc
Confidence 01111134566776665 4899999888877753
No 343
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=24.37 E-value=22 Score=24.31 Aligned_cols=20 Identities=15% Similarity=-0.061 Sum_probs=17.2
Q ss_pred ChhhHHHHHhcccccccccc
Q 045431 20 PQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 20 Ps~r~la~~~~vs~~t~~~~ 39 (433)
++..+||+.+++|++|+...
T Consensus 15 ~s~~eLa~~lgvs~~tv~r~ 34 (81)
T 2htj_A 15 GKTAEIAEALAVTDYQARYY 34 (81)
T ss_dssp CCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 68999999999999997543
No 344
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=24.23 E-value=15 Score=27.90 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=24.6
Q ss_pred cccCCChhhHHHHHhccccccccccC----CCCCCcH
Q 045431 15 KCVAAPQEEKIAYKTKVSRNGNLGKL----QAGYLFP 47 (433)
Q Consensus 15 ~g~~LPs~r~la~~~~vs~~t~~~~l----~~g~~~~ 47 (433)
.|..-||..+||+.+++|.+++...+ +.||+..
T Consensus 47 ~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 47 EGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp TTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEE
T ss_pred cCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35667999999999999999975433 2466654
No 345
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=24.20 E-value=66 Score=30.14 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
.++++++++-|+++|+-||.|-++....
T Consensus 81 ~~d~~~lv~~ah~~Gi~vilD~V~NH~s 108 (424)
T 2dh2_A 81 KEDFDSLLQSAKKKSIRVILDLTPNYRG 108 (424)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTTTS
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 8999999999999999999999988654
No 346
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=23.95 E-value=51 Score=17.65 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHcCCEE
Q 045431 223 TREQLTRLVQFAKDNGSII 241 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~l 241 (433)
++++++++.+-+++.++.+
T Consensus 13 tpeelkklkeeakkanirv 31 (36)
T 2ki0_A 13 TPEELKKLKEEAKKANIRV 31 (36)
T ss_dssp CHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHhccEEE
Confidence 4899999999999887754
No 347
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.91 E-value=9.6 Score=27.04 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=16.2
Q ss_pred hhHHHHHhccccccccccCC
Q 045431 22 EEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 22 ~r~la~~~~vs~~t~~~~l~ 41 (433)
..+.|+.|||||+|.|.+++
T Consensus 67 ~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 67 KQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp TTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 46889999999999876654
No 348
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=23.79 E-value=55 Score=28.71 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAY 247 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~ 247 (433)
..+.+++++++|.++|+.+|+|-..
T Consensus 62 ~~~~ld~~v~~a~~~Gi~Vild~H~ 86 (294)
T 2whl_A 62 DIDTIREVIELAEQNKMVAVVEVHD 86 (294)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4788999999999999999998543
No 349
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=23.52 E-value=18 Score=28.66 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=28.8
Q ss_pred ccccccccccccccCCChhhHHHHHhccccccccccCCC
Q 045431 4 AWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQA 42 (433)
Q Consensus 4 ~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l~~ 42 (433)
+-++..+=....|-.=-|.+++|+..|||+.|.|....+
T Consensus 12 Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tly~~F~s 50 (180)
T 2fd5_A 12 ILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQS 50 (180)
T ss_dssp HHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSC
T ss_pred HHHHHHHHHHHhCcccCCHHHHHHHhCCCccHHHHHCCC
Confidence 333444444567777778999999999999999976653
No 350
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=23.44 E-value=55 Score=31.28 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++-|+++|+-||.|-++...
T Consensus 102 ~~df~~Lv~~aH~~Gi~VilD~V~NH~ 128 (488)
T 2wc7_A 102 NEAFKELLDAAHQRNIKVVLDGVFNHS 128 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcC
Confidence 689999999999999999999887653
No 351
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=23.29 E-value=22 Score=22.58 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=14.6
Q ss_pred hhhHHHHHhcccccccc
Q 045431 21 QEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~ 37 (433)
+++++|+.+|||++++.
T Consensus 16 s~~~lA~~~gis~~~i~ 32 (66)
T 2xi8_A 16 SQSELAALLEVSRQTIN 32 (66)
T ss_dssp CHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHCcCHHHHH
Confidence 58999999999998853
No 352
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=28.96 E-value=17 Score=27.02 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCEEEEeccccc
Q 045431 227 LTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 227 ~~~i~~~a~~~~~~li~De~~~~ 249 (433)
-.+|.++|+++|++|++|-.-+.
T Consensus 29 A~~I~e~A~e~gVPi~e~~~LAr 51 (114)
T 3b0z_B 29 ALRIREIGAEHRVPTLEAPPLAR 51 (114)
Confidence 58899999999999999987654
No 353
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=23.15 E-value=65 Score=30.33 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
+.++++++++.|+++|+-||.|-++...
T Consensus 82 t~~~~~~lv~~~h~~Gi~vi~D~V~NH~ 109 (449)
T 3dhu_A 82 TLADFKALTDRAHELGMKVMLDIVYNHT 109 (449)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcC
Confidence 4899999999999999999999887643
No 354
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=23.01 E-value=65 Score=29.25 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHhccCCCCCCcEEEcCCh---HHHHHHHHHhcCCC-CEEEEeCCCChh-hh--hhHHHhCCcccccccc
Q 045431 107 EKPLRAAIASTFYKDLGIEEGDIFVSDGA---KCDISRLQIVFGSN-VTMAVQDPSYPA-YV--DSSVIMGQTGEFQKDA 179 (433)
Q Consensus 107 ~~~lr~~la~~l~~~~~~~~~~i~~~~G~---~~al~~l~~l~~~g-d~Vl~~~p~~~~-~~--~~~~~~g~~~~~~~~~ 179 (433)
..+-|+++.+.... ..-.|++..|+ .+++.+....-+-| |.|++..|.|.. .. .+...+.
T Consensus 77 s~eEr~~vi~~~~~----grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~--------- 143 (344)
T 2hmc_A 77 TDEQRMEGVERLVK----AGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFK--------- 143 (344)
T ss_dssp CHHHHHHHHHHHHH----TTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHhC----CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHH---------
Confidence 45556666665211 12247776665 45566554444444 889999998854 21 1111111
Q ss_pred cccceEEEeecCccCCcccCCCC-CCCccEEEEcCCCCccccCCCHHHHHHH-HHHHHHcCCEEEEecc
Q 045431 180 EKYGKIEYMRCTAENGFFPDLST-VARTDIIFFCSPNNPTGAAATREQLTRL-VQFAKDNGSIIVYDSA 246 (433)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~p~nPtG~~~~~~~~~~i-~~~a~~~~~~li~De~ 246 (433)
.+.+ ..+..++++++| .||..++.+.+.+| ++ --++.=|=|..
T Consensus 144 -------------------~IA~aa~~lPiilYn~P--~tg~~l~~e~~~~L~a~---~pnIvGiKdss 188 (344)
T 2hmc_A 144 -------------------AILSAAPEIPAVIYNSP--YYGFATRADLFFALRAE---HKNLVGFKEFG 188 (344)
T ss_dssp -------------------HHHHHSTTSCEEEEEBG--GGTBCCCHHHHHHHHHH---CTTEEEEEECS
T ss_pred -------------------HHHhhCCCCcEEEEecC--ccCCCcCHHHHHHHHhc---CCCEEEEEcCC
Confidence 1111 124456788888 79999998888877 43 23555555554
No 355
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=22.98 E-value=21 Score=25.35 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=15.3
Q ss_pred hhhHHHHHhcccccccc
Q 045431 21 QEEKIAYKTKVSRNGNL 37 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~ 37 (433)
|.+++|..+|||++|++
T Consensus 25 s~~~ia~~~gIs~~tl~ 41 (97)
T 2jn6_A 25 SLQQIANDLGINRVTLK 41 (97)
T ss_dssp CHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHHCcCHHHHH
Confidence 68999999999999865
No 356
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=22.95 E-value=17 Score=29.03 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=27.8
Q ss_pred ccccccccccccCCChhhHHHHHhccccccccccCCC
Q 045431 6 VQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQA 42 (433)
Q Consensus 6 ~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l~~ 42 (433)
++..+=....|-.==|.+++|+..|||+.|.|..+.+
T Consensus 14 ~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 50 (178)
T 4hku_A 14 NMAEKIIYEKGMEKTTLYDIASNLNVTHAALYKHYRN 50 (178)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSS
T ss_pred HHHHHHHHHhCcccccHHHHHHHhCcCHhHHHHHCCC
Confidence 3344444556766678999999999999999977653
No 357
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=22.89 E-value=14 Score=23.99 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=16.6
Q ss_pred hhHHHHHhccccccccccCC
Q 045431 22 EEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 22 ~r~la~~~~vs~~t~~~~l~ 41 (433)
..+.|+.||+|++|.|.+++
T Consensus 35 ~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 35 LKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56899999999999876654
No 358
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=22.83 E-value=23 Score=23.34 Aligned_cols=16 Identities=0% Similarity=-0.128 Sum_probs=14.1
Q ss_pred hhhHHHHHhccccccc
Q 045431 21 QEEKIAYKTKVSRNGN 36 (433)
Q Consensus 21 s~r~la~~~~vs~~t~ 36 (433)
++.++|+.+|||++|+
T Consensus 23 sq~~lA~~~gis~~~i 38 (73)
T 3omt_A 23 TNLWLTETLDKNKTTV 38 (73)
T ss_dssp CHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 6889999999998884
No 359
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=22.72 E-value=2.1e+02 Score=24.11 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=34.7
Q ss_pred HHHHHHHHHhc---cCCCCCCcEEEcCChHHH--HHHHHHhcCCCCEEEEeCCCChhhhhhHHHhC
Q 045431 110 LRAAIASTFYK---DLGIEEGDIFVSDGAKCD--ISRLQIVFGSNVTMAVQDPSYPAYVDSSVIMG 170 (433)
Q Consensus 110 lr~~la~~l~~---~~~~~~~~i~~~~G~~~a--l~~l~~l~~~gd~Vl~~~p~~~~~~~~~~~~g 170 (433)
.|..+|+-+.+ .+++.|.+.++=-|+-.+ ...+...+.|..+|...+..-.....+.+.+.
T Consensus 58 ~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~ 123 (233)
T 4df3_A 58 YRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR 123 (233)
T ss_dssp TTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST
T ss_pred CchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH
Confidence 34445554443 455677666544444433 33466677887788887777655555544443
No 360
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=22.54 E-value=72 Score=31.11 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++.|+++|+-||.|-++...
T Consensus 79 ~~df~~Lv~~aH~~Gi~VilD~V~NHt 105 (557)
T 1zja_A 79 MEDFDRLMAELKKRGMRLMVDVVINHS 105 (557)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 899999999999999999999887654
No 361
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=22.47 E-value=19 Score=29.05 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=26.2
Q ss_pred ccccccccccCCChhhHHHHHhccccccccccCCC
Q 045431 8 AKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQA 42 (433)
Q Consensus 8 ~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l~~ 42 (433)
..+=....|-.==|.+++|++.|||+.|.|....+
T Consensus 22 a~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 56 (195)
T 2iu5_A 22 FKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQN 56 (195)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSS
T ss_pred HHHHHHhCCCCeeCHHHHHHHhCCCHHHHHHHcCC
Confidence 33334456666568999999999999999977653
No 362
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.47 E-value=21 Score=22.50 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=15.5
Q ss_pred hhhHHHHHhccccccccc
Q 045431 21 QEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 21 s~r~la~~~~vs~~t~~~ 38 (433)
|.+++|+.+++|.+|+..
T Consensus 15 s~~eIA~~l~is~~tV~~ 32 (61)
T 2jpc_A 15 TNHGISEKLHISIKTVET 32 (61)
T ss_dssp CSHHHHHHTCSCHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHH
Confidence 578999999999999653
No 363
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=22.25 E-value=24 Score=24.77 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=14.4
Q ss_pred hhhHHHHHhccccccc
Q 045431 21 QEEKIAYKTKVSRNGN 36 (433)
Q Consensus 21 s~r~la~~~~vs~~t~ 36 (433)
++.+||+.+|||++|+
T Consensus 39 Tq~eLA~~~GiS~~ti 54 (88)
T 3t76_A 39 KKGELREAVGVSKSTF 54 (88)
T ss_dssp CHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 6899999999999885
No 364
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=22.22 E-value=69 Score=30.93 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=35.5
Q ss_pred eEEEeecCccCCcccCCCCCCCc---cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCCEEE
Q 045431 184 KIEYMRCTAENGFFPDLSTVART---DIIFFCSPNNPTGAAATREQLTRLVQFAKDNGSIIV 242 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~---~~i~l~~p~nPtG~~~~~~~~~~i~~~a~~~~~~li 242 (433)
+...+...++.+|..++...+.. .+ .+......|..|+.+++++|++.|+++||-||
T Consensus 189 N~lh~HltDdq~wriei~~~P~Lt~~ga--~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VI 248 (512)
T 1jak_A 189 NKLHLHLSDDQGWRIAIDSWPRLATYGG--STEVGGGPGGYYTKAEYKEIVRYAASRHLEVV 248 (512)
T ss_dssp CEEEEECBCSSCBCBCCTTSTHHHHTTT--SCCTTSSCCCCBCHHHHHHHHHHHHHTTCEEE
T ss_pred cEEEEEeccCCCceehhhhhHHHHhhcC--ccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 55555555555665554432210 00 00111233678999999999999999999998
No 365
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=22.09 E-value=11 Score=27.86 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=17.1
Q ss_pred CChhhHHHHHhccccccccc
Q 045431 19 APQEEKIAYKTKVSRNGNLG 38 (433)
Q Consensus 19 LPs~r~la~~~~vs~~t~~~ 38 (433)
.-|+++||+..+||.+|+.+
T Consensus 39 ~~si~elA~~~~vS~aTv~R 58 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIR 58 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHH
T ss_pred hcCHHHHHHHHCCCHHHHHH
Confidence 35789999999999999764
No 366
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=22.07 E-value=59 Score=29.21 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSA 246 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~ 246 (433)
.+.+.+++++|.++|+++|+|-.
T Consensus 104 ~~~ld~~v~~a~~~Gi~VilD~H 126 (327)
T 3pzt_A 104 KNKVKEAVEAAKELGIYVIIDWH 126 (327)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEec
Confidence 57899999999999999999864
No 367
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=22.01 E-value=24 Score=23.55 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=14.3
Q ss_pred hhhHHHHHhccccccc
Q 045431 21 QEEKIAYKTKVSRNGN 36 (433)
Q Consensus 21 s~r~la~~~~vs~~t~ 36 (433)
|+++||+.+|||++++
T Consensus 17 sq~~lA~~~gis~~~i 32 (77)
T 2k9q_A 17 TAKSVAEEMGISRQQL 32 (77)
T ss_dssp CHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHhCCCHHHH
Confidence 5899999999999885
No 368
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.91 E-value=14 Score=25.69 Aligned_cols=20 Identities=0% Similarity=0.031 Sum_probs=16.9
Q ss_pred ChhhHHHHHhcccccccccc
Q 045431 20 PQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 20 Ps~r~la~~~~vs~~t~~~~ 39 (433)
-|..+||+.||+|++++..+
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~ 50 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKA 50 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 56899999999999886544
No 369
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=21.85 E-value=60 Score=28.69 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYA 248 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~ 248 (433)
.+.+.+++++|.++|+++|+|-...
T Consensus 79 ~~~ld~~v~~a~~~Gi~Vild~H~~ 103 (303)
T 7a3h_A 79 KEKVKEAVEAAIDLDIYVIIDWHIL 103 (303)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 6789999999999999999987543
No 370
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=21.79 E-value=14 Score=29.69 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=30.4
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccccCC
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l~ 41 (433)
++|-++..+=....|-.=-|.+++|++.|||+.|.|....
T Consensus 5 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 44 (194)
T 3bqz_B 5 DKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFK 44 (194)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCC
Confidence 4444555555566777777899999999999999987654
No 371
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=21.63 E-value=69 Score=33.32 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
.++++++++.|+++|+-||.|-+|...
T Consensus 369 ~~efk~lV~~~H~~GI~VILDvV~NH~ 395 (877)
T 3faw_A 369 IAELKQLIHDIHKRGMGVILDVVYNHT 395 (877)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccc
Confidence 689999999999999999999998643
No 372
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=21.62 E-value=25 Score=23.67 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=14.6
Q ss_pred hhhHHHHHhccccccc
Q 045431 21 QEEKIAYKTKVSRNGN 36 (433)
Q Consensus 21 s~r~la~~~~vs~~t~ 36 (433)
++.+||+.+|||++++
T Consensus 13 sq~~lA~~lgvs~~~i 28 (79)
T 3bd1_A 13 SVSALAASLGVRQSAI 28 (79)
T ss_dssp SHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHCCCHHHH
Confidence 7899999999999885
No 373
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=21.60 E-value=77 Score=31.01 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
+.++++++++.|+++|+-||.|-++...
T Consensus 91 t~~df~~lv~~aH~~Gi~VilD~V~NH~ 118 (570)
T 1m53_A 91 TMEDFDSLVAEMKKRNMRLMIDVVINHT 118 (570)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 3899999999999999999999887654
No 374
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=21.55 E-value=87 Score=31.03 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecccccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYIS 252 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~ 252 (433)
+.++++++++.|+++|+-||.|-++.....
T Consensus 203 t~~~~~~lv~~~H~~Gi~VilD~V~NH~~~ 232 (617)
T 1m7x_A 203 TRDDFRYFIDAAHAAGLNVILDWVPGHFPT 232 (617)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTTSCCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecCcccC
Confidence 389999999999999999999999886543
No 375
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=21.33 E-value=89 Score=30.68 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYI 251 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~ 251 (433)
+.++++++++-|+++|+-||.|-++....
T Consensus 217 t~~df~~lv~~~H~~Gi~VilD~V~NH~~ 245 (583)
T 1ea9_C 217 DKDTLKKLVDLCHERGIRVLLDAVFNHSG 245 (583)
T ss_dssp CHHHHHHHHHHHTTTTCEEEEECCCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCC
Confidence 47999999999999999999999887543
No 376
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=21.33 E-value=26 Score=22.72 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=14.3
Q ss_pred hhhHHHHHhccccccc
Q 045431 21 QEEKIAYKTKVSRNGN 36 (433)
Q Consensus 21 s~r~la~~~~vs~~t~ 36 (433)
+++++|+.+|||++++
T Consensus 18 sq~~lA~~~gis~~~i 33 (71)
T 1zug_A 18 TQTELATKAGVKQQSI 33 (71)
T ss_dssp CHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHhCCCHHHH
Confidence 6899999999999885
No 377
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=21.27 E-value=63 Score=29.36 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYA 248 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~ 248 (433)
..+.+.+++++|.++|+++|+|-...
T Consensus 85 ~l~~ld~~v~~a~~~GiyVIlDlH~~ 110 (345)
T 3jug_A 85 DIDTVREVIELAEQNKMVAVVEVHDA 110 (345)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 47889999999999999999987543
No 378
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=21.23 E-value=79 Score=31.20 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
+.++++++++-|+++|+-||.|-++...
T Consensus 197 t~~df~~Lv~~aH~~Gi~VilD~V~NH~ 224 (601)
T 3edf_A 197 SNEDFVRLSTEARKRGMGLIQDVVLSHI 224 (601)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEECCccc
Confidence 3789999999999999999999987653
No 379
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=20.93 E-value=1e+02 Score=30.62 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
+.++++++++-|+++|+-||.|-++..+..+
T Consensus 201 ~~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~ 231 (618)
T 3m07_A 201 TPDDFKAFIDAAHGYGLSVVLDIVLNHFGPE 231 (618)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCCSS
T ss_pred CHHHHHHHHHHHHHCCCEEEEeecCccCCCC
Confidence 4899999999999999999999998865443
No 380
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=20.84 E-value=80 Score=31.46 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
+.++++++++-|+++|+-||.|-++..
T Consensus 284 t~~df~~LV~~aH~~GI~VIlD~V~NH 310 (645)
T 4aef_A 284 GDRAFVDLLSELKRFDIKVILDGVFHH 310 (645)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CHHHHHHHHHHhhhcCCEEEEEecccc
Confidence 589999999999999999999998775
No 381
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=20.82 E-value=67 Score=28.11 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAY 247 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~ 247 (433)
.+.+.+++++|.++|+.+|+|-..
T Consensus 78 ~~~ld~~v~~a~~~Gi~vild~h~ 101 (293)
T 1tvn_A 78 MSRLDTVVNAAIAEDMYVIIDFHS 101 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467889999999999999998654
No 382
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=20.81 E-value=26 Score=22.16 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=14.4
Q ss_pred hhHHHHHhcccccccc
Q 045431 22 EEKIAYKTKVSRNGNL 37 (433)
Q Consensus 22 ~r~la~~~~vs~~t~~ 37 (433)
.+++|..+|||.+|++
T Consensus 28 ~~~vA~~~gIs~~tl~ 43 (59)
T 2glo_A 28 QRATARKYNIHRRQIQ 43 (59)
T ss_dssp HHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 8999999999998864
No 383
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=20.73 E-value=17 Score=27.84 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=21.2
Q ss_pred ccccccCCChhhHHHHHhcccccccccc
Q 045431 12 SVCKCVAAPQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 12 ~l~~g~~LPs~r~la~~~~vs~~t~~~~ 39 (433)
.|..+.++ |.++||+.+|+|++|+...
T Consensus 12 ~L~~~~~~-~~~ela~~lg~s~~tv~~~ 38 (141)
T 1i1g_A 12 ILEKDART-PFTEIAKKLGISETAVRKR 38 (141)
T ss_dssp HHHHCTTC-CHHHHHHHHTSCHHHHHHH
T ss_pred HHHHcCCC-CHHHHHHHHCcCHHHHHHH
Confidence 35556677 5999999999999997543
No 384
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=20.63 E-value=83 Score=30.66 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYAL 249 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~ 249 (433)
+.++++++++.|+++|+-||.|-++..
T Consensus 77 t~~df~~lv~~~h~~Gi~VilD~V~NH 103 (558)
T 1uok_A 77 TMEDWDELLHEMHERNMKLMMDLVVNH 103 (558)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 389999999999999999999988764
No 385
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=20.51 E-value=73 Score=31.11 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
.++++++++.|+++|+-||.|-++.....+
T Consensus 167 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~ 196 (558)
T 3vgf_A 167 PEGFRKLVDEAHKKGLGVILDVVYNHVGPE 196 (558)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCSS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeeccccCC
Confidence 799999999999999999999998765433
No 386
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=20.51 E-value=13 Score=27.38 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=17.7
Q ss_pred CChhhHHHHHhcccccccccc
Q 045431 19 APQEEKIAYKTKVSRNGNLGK 39 (433)
Q Consensus 19 LPs~r~la~~~~vs~~t~~~~ 39 (433)
.-|+++||+..+||.+|+.+-
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf 55 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRL 55 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHH
Confidence 457999999999999997653
No 387
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=20.46 E-value=24 Score=28.80 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=29.3
Q ss_pred cccccccccccccccCCChhhHHHHHhccccccccccCC
Q 045431 3 NAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 3 ~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l~ 41 (433)
+|-++..+-....|-.=-|.+++|++.|||++|.|....
T Consensus 23 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 61 (216)
T 3qqa_A 23 KIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYDGFK 61 (216)
T ss_dssp HHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSSCSCC
T ss_pred HHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHHHhcC
Confidence 334444444556777777899999999999999997664
No 388
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=20.39 E-value=96 Score=30.63 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccccC
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALYISD 253 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~~~~ 253 (433)
+.++++++++-|+++|+-||.|-++.....+
T Consensus 191 t~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~ 221 (602)
T 2bhu_A 191 RPEDLMALVDAAHRLGLGVFLDVVYNHFGPS 221 (602)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCCSS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecccccccC
Confidence 4899999999999999999999998865433
No 389
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.38 E-value=27 Score=23.52 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=14.2
Q ss_pred hhhHHHHHhccccccc
Q 045431 21 QEEKIAYKTKVSRNGN 36 (433)
Q Consensus 21 s~r~la~~~~vs~~t~ 36 (433)
++.++|+.+|||++++
T Consensus 27 tq~~lA~~~gvs~~~i 42 (80)
T 3kz3_A 27 SYESVADKMGMGQSAV 42 (80)
T ss_dssp CHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHhCcCHHHH
Confidence 6899999999998874
No 390
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=20.36 E-value=26 Score=29.22 Aligned_cols=40 Identities=8% Similarity=0.095 Sum_probs=30.8
Q ss_pred ccccccccccccccccCCChhhHHHHHhccccccccccCC
Q 045431 2 QNAWVQAKRISVCKCVAAPQEEKIAYKTKVSRNGNLGKLQ 41 (433)
Q Consensus 2 ~~~~~~~~~g~l~~g~~LPs~r~la~~~~vs~~t~~~~l~ 41 (433)
++|-++..+=....|-.=-|.+++|+..|||+.|.|....
T Consensus 33 ~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~ 72 (230)
T 2iai_A 33 ETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVT 72 (230)
T ss_dssp SCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHHhCC
Confidence 4445555555566787777899999999999999997664
No 391
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Probab=20.32 E-value=67 Score=29.26 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccc
Q 045431 224 REQLTRLVQFAKDNGSIIVYDSAY 247 (433)
Q Consensus 224 ~~~~~~i~~~a~~~~~~li~De~~ 247 (433)
.+.+++++++|.++|+.||+|-..
T Consensus 89 l~~ld~~v~~a~~~Gi~VIld~H~ 112 (364)
T 1g01_A 89 KDLVYEGIELAFEHDMYVIVDWHV 112 (364)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEecc
Confidence 478899999999999999999765
No 392
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=20.19 E-value=28 Score=22.23 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=14.1
Q ss_pred hhhHHHHHhccccccc
Q 045431 21 QEEKIAYKTKVSRNGN 36 (433)
Q Consensus 21 s~r~la~~~~vs~~t~ 36 (433)
++.++|+.+|||++++
T Consensus 20 s~~~lA~~~gis~~~i 35 (68)
T 2r1j_L 20 RQAALGKMVGVSNVAI 35 (68)
T ss_dssp CHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHCCCHHHH
Confidence 6899999999998874
No 393
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=20.13 E-value=86 Score=30.84 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEecccccc
Q 045431 223 TREQLTRLVQFAKDNGSIIVYDSAYALY 250 (433)
Q Consensus 223 ~~~~~~~i~~~a~~~~~~li~De~~~~~ 250 (433)
+.++++++++.|+++|+-||.|-++...
T Consensus 86 t~~df~~lv~~~h~~Gi~VilD~V~NH~ 113 (589)
T 3aj7_A 86 TNEDCFALIEKTHKLGMKFITDLVINHC 113 (589)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 3799999999999999999999987754
Done!