BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045433
MGPWAQHGPLHELEMVLLDLPSLLCFSTYTLLVLFSAEIYHQARSLSTNKLRPAYYIVNA
IVYFIQRKQHTRGNTGPWVKYSCSYFILCCIGILDIWWQVICHAQCFPIESRDRQKKLYE
VGFVTGIFCTCFLIRCIAVAVSAFEKSADFDVLNNPILHLIYYMASF

High Scoring Gene Products

Symbol, full name Information P value
TOM1
AT4G21790
protein from Arabidopsis thaliana 5.4e-31
THH1
TOM THREE HOMOLOG 1
protein from Arabidopsis thaliana 3.8e-30
TOM3
tobamovirus multiplication protein 3
protein from Arabidopsis thaliana 1.0e-29

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045433
        (167 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119088 - symbol:TOM1 "AT4G21790" species:3702...   341  5.4e-31   1
TAIR|locus:2012552 - symbol:THH1 "TOM THREE HOMOLOG 1" sp...   333  3.8e-30   1
TAIR|locus:2051663 - symbol:TOM3 "tobamovirus multiplicat...   329  1.0e-29   1


>TAIR|locus:2119088 [details] [associations]
            symbol:TOM1 "AT4G21790" species:3702 "Arabidopsis
            thaliana" [GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0006914
            "autophagy" evidence=RCA] [GO:0046786 "viral replication complex
            formation and maintenance" evidence=IMP] GO:GO:0005774
            EMBL:CP002687 GenomeReviews:CT486007_GR InterPro:IPR009457
            Pfam:PF06454 GO:GO:0046786 EMBL:AY046049 EMBL:AY079319
            EMBL:AB016924 EMBL:AB016925 IPI:IPI00547049 RefSeq:NP_567636.1
            UniGene:At.24879 UniGene:At.64691 IntAct:Q9FEG2 PRIDE:Q9FEG2
            EnsemblPlants:AT4G21790.1 GeneID:828267 KEGG:ath:AT4G21790
            TAIR:At4g21790 eggNOG:NOG270740 HOGENOM:HOG000239356
            InParanoid:Q9FEG2 OMA:ESTQWQD PhylomeDB:Q9FEG2
            ProtClustDB:CLSN2715516 Genevestigator:Q9FEG2 Uniprot:Q9FEG2
        Length = 291

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 81/156 (51%), Positives = 99/156 (63%)

Query:    16 VLLDLPSLLCFSTYTLLVLFSAEIYHQARSLSTNKLRPAYYIVNAIVYFIQRK--QHTRG 73
             VLLDLP LL FS YTLLVLF AEIYHQARSL T+KLR  Y  VN  VY  Q     +   
Sbjct:   106 VLLDLPGLLFFSAYTLLVLFWAEIYHQARSLPTDKLRITYISVNVAVYLAQIGIWAYIWV 165

Query:    74 NTGPWVKYSCSYFI-----LCCIGILDIWWQVICHAQCFPIESRDRQKKLYEVGFVTGIF 128
             +    V+     FI     +  +G L    ++    + FPIES+ R+KKL+EVG VT I 
Sbjct:   166 HDNSTVELVGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAIC 225

Query:   129 CTCFLIRCIAVAVSAFEKSADFDVLNNPILHLIYYM 164
              TCFLIRC+ VAVSAF+K    DVL++P+L+LIYYM
Sbjct:   226 FTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIYYM 261


>TAIR|locus:2012552 [details] [associations]
            symbol:THH1 "TOM THREE HOMOLOG 1" species:3702
            "Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] [GO:0046790 "virion
            binding" evidence=IPI] EMBL:CP002684 InterPro:IPR009457
            Pfam:PF06454 EMBL:BT020325 EMBL:BT021134 EMBL:AB057678
            IPI:IPI00519752 RefSeq:NP_563953.1 RefSeq:NP_849661.1
            UniGene:At.16603 PRIDE:Q948R8 EnsemblPlants:AT1G14530.1
            EnsemblPlants:AT1G14530.2 GeneID:838015 KEGG:ath:AT1G14530
            OMA:HLMVIIS ProtClustDB:CLSN2687805 Genevestigator:Q948R8
            Uniprot:Q948R8
        Length = 293

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 75/159 (47%), Positives = 104/159 (65%)

Query:    13 LEMVLLDLPSLLCFSTYTLLVLFSAEIYHQARSLSTNKLRPAYYIVNAIVYFIQRKQHTR 72
             L+ +LLD+PSL  F+TY LLVLF AEIY+QAR++ST+ LRP+++ +NA+VY IQ      
Sbjct:   105 LQHILLDIPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFFTINAVVYVIQIALWLV 164

Query:    73 GNTGP---WVKYSCSYF----ILCCIGILDIWWQVICHAQCFPIESRDRQKKLYEVGFVT 125
                 P    V  S  +F    +   +G L    ++    Q FP+ES+ R+KKL EVG+VT
Sbjct:   165 LWWKPVHLMVIISKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVT 224

Query:   126 GIFCTCFLIRCIAVAVSAFEKSADFDVLNNPILHLIYYM 164
              I  TCFLIRCI +   AF+ +AD DVL++PIL+ IYY+
Sbjct:   225 TICFTCFLIRCIMMCFDAFDDAADLDVLDHPILNFIYYL 263


>TAIR|locus:2051663 [details] [associations]
            symbol:TOM3 "tobamovirus multiplication protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0046786 "viral replication complex formation and
            maintenance" evidence=IMP] EMBL:CP002685 EMBL:AC005936
            UniGene:At.23323 InterPro:IPR009457 Pfam:PF06454 GO:GO:0046786
            ProtClustDB:CLSN2687805 HOGENOM:HOG000239356 EMBL:AB036427
            EMBL:AK117222 IPI:IPI00546701 PIR:H84433 RefSeq:NP_027422.1
            PaxDb:Q9ZUM2 PRIDE:Q9ZUM2 EnsemblPlants:AT2G02180.1 GeneID:814749
            KEGG:ath:AT2G02180 TAIR:At2g02180 eggNOG:NOG75316 InParanoid:Q9ZUM2
            OMA:NGAVDWW PhylomeDB:Q9ZUM2 ArrayExpress:Q9ZUM2
            Genevestigator:Q9ZUM2 Uniprot:Q9ZUM2
        Length = 303

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 73/159 (45%), Positives = 105/159 (66%)

Query:    13 LEMVLLDLPSLLCFSTYTLLVLFSAEIYHQARSLSTNKLRPAYYIVNAIVYFIQRKQHTR 72
             L+ +LLD+PSL  F+TY LLVLF AEIY+QAR++ST+ LRP+++ +NA+VY +Q      
Sbjct:   115 LQHILLDIPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFFTINAVVYVVQIALWLV 174

Query:    73 GNTGP---WVKYSCSYF----ILCCIGILDIWWQVICHAQCFPIESRDRQKKLYEVGFVT 125
                 P    V  S  +F    +   +G L    ++    Q FP+ES+ R+KKL EVG+VT
Sbjct:   175 LWWKPVRVMVILSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVT 234

Query:   126 GIFCTCFLIRCIAVAVSAFEKSADFDVLNNPILHLIYYM 164
              I  TCFLIRCI +  +AF++ A+ DVL++PIL+ IYY+
Sbjct:   235 TICFTCFLIRCIMMCFAAFDEGANLDVLDHPILNFIYYL 273


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.143   0.481    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      167       167   0.00075  108 3  11 21  0.40    31
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  173 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.49u 0.11s 14.60t   Elapsed:  00:00:01
  Total cpu time:  14.49u 0.11s 14.60t   Elapsed:  00:00:01
  Start:  Mon May 20 21:55:45 2013   End:  Mon May 20 21:55:46 2013

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