Query 045433
Match_columns 167
No_of_seqs 92 out of 94
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 13:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06454 DUF1084: Protein of u 100.0 9E-50 1.9E-54 342.1 12.1 164 3-166 83-253 (281)
2 PF04479 RTA1: RTA1 like prote 78.7 19 0.00042 29.9 8.9 136 7-142 26-174 (226)
3 PF06664 MIG-14_Wnt-bd: Wnt-bi 56.0 44 0.00096 28.6 6.6 111 29-140 127-254 (298)
4 PHA03048 IMV membrane protein; 52.2 30 0.00066 25.9 4.3 58 52-111 10-74 (93)
5 PF04123 DUF373: Domain of unk 51.5 93 0.002 28.2 8.1 110 43-156 150-259 (344)
6 PHA02898 virion envelope prote 50.9 32 0.0007 25.7 4.2 53 52-106 10-70 (92)
7 PF08465 Herpes_TK_C: Thymidin 46.1 18 0.00039 22.4 1.9 12 36-47 10-21 (33)
8 PRK13743 conjugal transfer pro 41.9 11 0.00024 30.1 0.7 55 49-120 73-134 (141)
9 PHA02638 CC chemokine receptor 27.3 1.2E+02 0.0026 27.4 4.9 54 90-145 286-339 (417)
10 PF13850 ERGIC_N: Endoplasmic 25.3 91 0.002 22.6 3.1 22 25-46 27-48 (96)
11 PF06736 DUF1211: Protein of u 23.4 2E+02 0.0044 20.4 4.6 51 10-62 33-84 (92)
12 COG3949 Uncharacterized membra 22.9 1.2E+02 0.0026 27.7 4.0 31 16-46 241-277 (349)
13 PF02118 Srg: Srg family chemo 21.4 3.5E+02 0.0075 22.0 6.2 40 99-138 190-229 (275)
14 PF10326 7TM_GPCR_Str: Serpent 20.6 59 0.0013 27.3 1.5 30 91-120 210-239 (307)
15 PF10319 7TM_GPCR_Srj: Serpent 20.4 3E+02 0.0066 24.7 6.0 57 13-72 87-148 (310)
No 1
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=100.00 E-value=9e-50 Score=342.09 Aligned_cols=164 Identities=45% Similarity=0.704 Sum_probs=154.8
Q ss_pred CCcccCChHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCccceeeehhHHHHHhhhheeee---cCCCcch
Q 045433 3 PWAQHGPLHELEMVLLDLPSLLCFSTYTLLVLFSAEIYHQARSLSTNKLRPAYYIVNAIVYFIQRKQHTR---GNTGPWV 79 (167)
Q Consensus 3 ~~v~~~~p~~~~~iL~dlP~llFFStYtlLvLFWAeIYy~A~~~~t~~lrp~f~~iN~vvY~iqi~iwi~---~~~~~~~ 79 (167)
|.+++.+|++++++|+|+|+++|||||+++++||||||||||+.+++++||.|.++|+++|++|+++|+. ++++..+
T Consensus 83 ~~~~~~~~~~~~~iL~~lP~~lfFSty~llvlfWaeIy~~ar~~~~~~l~~~~~~iN~~iY~~~i~i~i~~~~~~~~~v~ 162 (281)
T PF06454_consen 83 PSVFLIDPNVLDYILNDLPTFLFFSTYTLLVLFWAEIYYQARSVSTDKLRPIFIVINVVIYLFQIIIWILLFFSPSSTVS 162 (281)
T ss_pred HhhHhcChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhheecccchHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999999999999 5556677
Q ss_pred hhhHHHH----HHHHHHHHHHHHHHHHhhhcCCccchhhhhhheeeeehhhHHHHHhHHHHHHHHHHhcccCCCccccCc
Q 045433 80 KYSCSYF----ILCCIGILDIWWQVICHAQCFPIESRDRQKKLYEVGFVTGIFCTCFLIRCIAVAVSAFEKSADFDVLNN 155 (167)
Q Consensus 80 ~is~~ff----l~aa~~Fl~yG~kL~~~Lrrfp~eSkgr~kkl~eV~~vT~iC~~cFliRc~~~~~sa~~~~~~ldv~~h 155 (167)
.+++.++ +++|+||++||+|+|.|+||+|+|||||+||++||+.+|.+|++||++||++++++++|++.|+|+.+|
T Consensus 163 ~i~~~~~A~isli~a~~Fl~YG~~L~~~Lr~~p~~s~~r~kkl~~V~~vt~ic~~cF~ir~i~~~~~~~~~~~~~d~~~~ 242 (281)
T PF06454_consen 163 IIYAIFIAVISLIAALGFLYYGGKLFFKLRRFPIESKGRSKKLRKVGFVTIICSVCFLIRCIMVLFSAFDKPANLDVLSH 242 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccchhhh
Confidence 7776655 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhc
Q 045433 156 PILHLIYYMAS 166 (167)
Q Consensus 156 p~l~~~yy~~~ 166 (167)
|++|++||.++
T Consensus 243 ~i~~~iyy~i~ 253 (281)
T PF06454_consen 243 PILNFIYYFIT 253 (281)
T ss_pred HHHHHHHHHHH
Confidence 99999999863
No 2
>PF04479 RTA1: RTA1 like protein; InterPro: IPR007568 This family is comprised of fungal proteins with multiple transmembrane regions. RTA1 (P53047 from SWISSPROT) is involved in resistance to 7-aminocholesterol [], while RTM1 (P40113 from SWISSPROT) confers resistance to an unknown toxic chemical in molasses []. These proteins may bind to the toxic substance, and thus prevent toxicity. They are not thought to be involved in the efflux of xenobiotics [].; GO: 0006950 response to stress, 0016021 integral to membrane
Probab=78.75 E-value=19 Score=29.90 Aligned_cols=136 Identities=12% Similarity=0.025 Sum_probs=70.9
Q ss_pred cCChHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHHHhhc-ccCCccceeeehhHHHHHhhhheeee--cCCC----cc
Q 045433 7 HGPLHELEMVLLDL-PSLLCFSTYTLLVLFSAEIYHQARSL-STNKLRPAYYIVNAIVYFIQRKQHTR--GNTG----PW 78 (167)
Q Consensus 7 ~~~p~~~~~iL~dl-P~llFFStYtlLvLFWAeIYy~A~~~-~t~~lrp~f~~iN~vvY~iqi~iwi~--~~~~----~~ 78 (167)
+..|-++|.++.-+ |.++=-+-|..+-=.-...-.+.... +.+.....|...+++..++|.+--.. +.++ .-
T Consensus 26 ~~~~~i~q~v~iliaP~~~~A~iY~~lgriv~~~~~~~~~~~~p~~~~~iFv~~Dv~s~~lQ~~Gg~l~~~~~s~~~G~~ 105 (226)
T PF04479_consen 26 SLGPFIIQQVLILIAPTFIAAAIYMILGRIVRYYGPEYSILIPPRWYTKIFVTLDVISLVLQAAGGGLAASANSRKTGRN 105 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccchhhhHHHHHHHHHHHHHhhcCcceeeecccccCCCE
Confidence 35566777766555 55444566666533322211111112 33344567888999999999874444 2222 11
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHhhhcCCccchhh----hhhheeeeehhhHHHHHhHHHHHHHHHH
Q 045433 79 VKYSCSYF-ILCCIGILDIWWQVICHAQCFPIESRDR----QKKLYEVGFVTGIFCTCFLIRCIAVAVS 142 (167)
Q Consensus 79 ~~is~~ff-l~aa~~Fl~yG~kL~~~Lrrfp~eSkgr----~kkl~eV~~vT~iC~~cFliRc~~~~~s 142 (167)
..+....+ +..-..|..........++|-|.+.+.+ +++.+.......+.+.+-++||+.=+.-
T Consensus 106 i~iaGl~~Ql~~~~~F~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~~li~iR~iyR~vE 174 (226)
T PF04479_consen 106 IVIAGLALQLAFFGIFLILALRFHYRLRRRPRKAVHRNRPKSWRWRIFLIALYVASLLILIRSIYRLVE 174 (226)
T ss_pred EEEehHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 11122223 2222233333333344455555544432 3344566666777889999999987663
No 3
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=56.01 E-value=44 Score=28.63 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCccceeee---hhHHHHHhhhheeee-------cCC-Ccch-----hhhHHHHHHHHHH
Q 045433 29 YTLLVLFSAEIYHQARSLSTNKLRPAYYI---VNAIVYFIQRKQHTR-------GNT-GPWV-----KYSCSYFILCCIG 92 (167)
Q Consensus 29 YtlLvLFWAeIYy~A~~~~t~~lrp~f~~---iN~vvY~iqi~iwi~-------~~~-~~~~-----~is~~ffl~aa~~ 92 (167)
++.+.+||--++..-|....++--+.|.- +-++.++...+.-.. ||. +.+. ...+.++.++++.
T Consensus 127 ~~~Ll~FwL~~~~~~r~~~~r~~~~~y~~ki~~v~~~~~~~~i~~~~~~~~~~~dP~~~~~~~~~~~~~~~~~~~l~~i~ 206 (298)
T PF06664_consen 127 YAYLLLFWLVFFDSLRMQNERKNLKFYWPKIILVGLFWLFLFIFDIWERGNQLKDPFYSIWVDDPGFNIAKAFIILAGIC 206 (298)
T ss_pred HHHHHHHHHHHHHHHhccCCcCceEEEhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccCcchhHHHHHHHHHHHHH
Confidence 67889999999988887333322222222 112222222221111 332 1111 2223444333331
Q ss_pred HHHHHHHHHHhhhcCCccchhhh-hhheeeeehhhHHHHHhHHHHHHHH
Q 045433 93 ILDIWWQVICHAQCFPIESRDRQ-KKLYEVGFVTGIFCTCFLIRCIAVA 140 (167)
Q Consensus 93 Fl~yG~kL~~~Lrrfp~eSkgr~-kkl~eV~~vT~iC~~cFliRc~~~~ 140 (167)
.|.=.-++...|.+++-.+.|. ++.|=.+..|.+|..+..+=.++..
T Consensus 207 -~Y~l~ll~li~rs~~~i~~~~~~~R~kfl~~~t~i~~~~~~~~~~~~~ 254 (298)
T PF06664_consen 207 -AYFLYLLFLIIRSFSEIRNKRYFLRFKFLTLFTLICAAVTVIGLILGF 254 (298)
T ss_pred -HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0222344555555554433332 2444566667777766666555553
No 4
>PHA03048 IMV membrane protein; Provisional
Probab=52.18 E-value=30 Score=25.93 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=38.7
Q ss_pred cceeeehhHHHHHhhhheeee------cC-CCcchhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 045433 52 RPAYYIVNAIVYFIQRKQHTR------GN-TGPWVKYSCSYFILCCIGILDIWWQVICHAQCFPIES 111 (167)
Q Consensus 52 rp~f~~iN~vvY~iqi~iwi~------~~-~~~~~~is~~ffl~aa~~Fl~yG~kL~~~Lrrfp~eS 111 (167)
+|....+-+++.++..|+... ++ ...|+.+|.+.|+++.. +..|.-+|.|-+|.=..|
T Consensus 10 y~S~vli~GIiLL~~aCIfAfidfsK~k~~~~~wRalsii~FIlgiv--l~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 10 YFSTALIGGIILLAASCIFAFVDFSKNKATVTVWRALSGIAFVLGIV--MTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhhcCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCC
Confidence 455666777788888888877 22 35789999987755554 456777777766543333
No 5
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=51.45 E-value=93 Score=28.19 Aligned_cols=110 Identities=14% Similarity=0.037 Sum_probs=68.4
Q ss_pred HhhcccCCccceeeehhHHHHHhhhheeeecCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhheeee
Q 045433 43 ARSLSTNKLRPAYYIVNAIVYFIQRKQHTRGNTGPWVKYSCSYFILCCIGILDIWWQVICHAQCFPIESRDRQKKLYEVG 122 (167)
Q Consensus 43 A~~~~t~~lrp~f~~iN~vvY~iqi~iwi~~~~~~~~~is~~ffl~aa~~Fl~yG~kL~~~Lrrfp~eSkgr~kkl~eV~ 122 (167)
-...+.++.|..+.-+=+++-++..+.-+.+. .+.+-.+-..+.++.+++.|..+-..+++.+.+.|.. -.-.++.
T Consensus 150 Kk~l~Dp~~~~~~lGvPG~~lLiy~i~~l~~~---~~~a~~~i~~~iG~yll~kGfgld~~~~~~~~~~~~~-l~~g~it 225 (344)
T PF04123_consen 150 KKALSDPEYRRTFLGVPGLILLIYAILALLGY---PAYALGIILLLIGLYLLYKGFGLDDYLREWLERFRES-LYEGRIT 225 (344)
T ss_pred HHhhcChhhhceeecchHHHHHHHHHHHHHcc---hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhccc-cccceee
Confidence 33446677887777333554443332222211 1222222236678888999999999888888776431 1334789
Q ss_pred ehhhHHHHHhHHHHHHHHHHhcccCCCccccCch
Q 045433 123 FVTGIFCTCFLIRCIAVAVSAFEKSADFDVLNNP 156 (167)
Q Consensus 123 ~vT~iC~~cFliRc~~~~~sa~~~~~~ldv~~hp 156 (167)
.+|.+......+=.++.......+..+.+....+
T Consensus 226 ~ityvva~~l~iig~i~g~~~~~~~~~~~~~~~~ 259 (344)
T PF04123_consen 226 FITYVVALLLIIIGIIYGYLTLWSYYSISGLIVP 259 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9999888888888888888777665555544444
No 6
>PHA02898 virion envelope protein; Provisional
Probab=50.94 E-value=32 Score=25.74 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=37.1
Q ss_pred cceeeehhHHHHHhhhheeee-------cC-CCcchhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 045433 52 RPAYYIVNAIVYFIQRKQHTR-------GN-TGPWVKYSCSYFILCCIGILDIWWQVICHAQC 106 (167)
Q Consensus 52 rp~f~~iN~vvY~iqi~iwi~-------~~-~~~~~~is~~ffl~aa~~Fl~yG~kL~~~Lrr 106 (167)
+|....+-+++.++..|+... +| ..+|+.+|.+.|+++.. +..|.-+|.|-+|
T Consensus 10 ~~s~vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgiv--l~lG~~ifs~y~r 70 (92)
T PHA02898 10 RPSYVVAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAII--LILGIIFFKGYNM 70 (92)
T ss_pred CcchHHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHH--HHHHHHHHHHHhh
Confidence 567777778888888888887 23 34788999987755544 4566666666664
No 7
>PF08465 Herpes_TK_C: Thymidine kinase from Herpesvirus C-terminal; InterPro: IPR013672 This domain is found towards the C terminus in Herpesvirus Thymidine kinases. ; GO: 0004797 thymidine kinase activity, 0005524 ATP binding
Probab=46.11 E-value=18 Score=22.35 Aligned_cols=12 Identities=33% Similarity=0.268 Sum_probs=11.2
Q ss_pred HHHHHHHHhhcc
Q 045433 36 SAEIYHQARSLS 47 (167)
Q Consensus 36 WAeIYy~A~~~~ 47 (167)
|.|||-|+.+.+
T Consensus 10 W~~IY~qi~kn~ 21 (33)
T PF08465_consen 10 WTEIYTQILKNP 21 (33)
T ss_pred HHHHHHHHHhCc
Confidence 999999999876
No 8
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=41.87 E-value=11 Score=30.05 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=32.2
Q ss_pred CCccceeeehhHHHHHhhhheeeecCCCcchhhhHHHHHHHHHHHHHHHHHHHH------hhhcCCccchhhhh-hhee
Q 045433 49 NKLRPAYYIVNAIVYFIQRKQHTRGNTGPWVKYSCSYFILCCIGILDIWWQVIC------HAQCFPIESRDRQK-KLYE 120 (167)
Q Consensus 49 ~~lrp~f~~iN~vvY~iqi~iwi~~~~~~~~~is~~ffl~aa~~Fl~yG~kL~~------~Lrrfp~eSkgr~k-kl~e 120 (167)
+.|--+=+..|+.+|+|-..+|.+ |.||+.-|.+.-. .+|-||.+.+-|++ ++||
T Consensus 73 peLnn~rymWNilMYaIPy~L~Al-----------------a~GFlv~~~~~p~~~~i~~~~~~f~l~r~~r~~n~lr~ 134 (141)
T PRK13743 73 PELNNFRYMWNILMYVIPYTLWAL-----------------AAGFLVAGVRNPLCELINGGIRIFRLKRRMRRENTLRE 134 (141)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-----------------HhchhhhhhhhHHHHHHhcceeeeehhcccchhhhhhc
Confidence 344333345789999998888876 5666666655322 33446666554433 4554
No 9
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=27.31 E-value=1.2e+02 Score=27.39 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhhcCCccchhhhhhheeeeehhhHHHHHhHHHHHHHHHHhcc
Q 045433 90 CIGILDIWWQVICHAQCFPIESRDRQKKLYEVGFVTGIFCTCFLIRCIAVAVSAFE 145 (167)
Q Consensus 90 a~~Fl~yG~kL~~~Lrrfp~eSkgr~kkl~eV~~vT~iC~~cFliRc~~~~~sa~~ 145 (167)
.+..++.+.+++..+++-+. +.++|+.+-+..++..-.+|++--.++.++.+++
T Consensus 286 l~vmi~cY~~I~~~L~~~~~--~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~ 339 (417)
T PHA02638 286 IIIFAFCYIKIILKLKQLKK--SKKTKSIIIVSIIIICSLICWIPLNIVILFATMY 339 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44457788899998887442 2344556667777777888888888888877764
No 10
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=25.25 E-value=91 Score=22.63 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 045433 25 CFSTYTLLVLFSAEIYHQARSL 46 (167)
Q Consensus 25 FFStYtlLvLFWAeIYy~A~~~ 46 (167)
..+...+++|||+|+++--+..
T Consensus 27 i~~~~~~~~L~~~E~~~y~~~~ 48 (96)
T PF13850_consen 27 IITIVLIVILFISELYSYLSGE 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 5677889999999998776553
No 11
>PF06736 DUF1211: Protein of unknown function (DUF1211); InterPro: IPR010617 This family represents a conserved region within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. These may possibly be integral membrane proteins.
Probab=23.35 E-value=2e+02 Score=20.42 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=31.8
Q ss_pred hHHHHHHHHhhchhH-HHHHHHHHHHHHHHHHHHHhhcccCCccceeeehhHHH
Q 045433 10 LHELEMVLLDLPSLL-CFSTYTLLVLFSAEIYHQARSLSTNKLRPAYYIVNAIV 62 (167)
Q Consensus 10 p~~~~~iL~dlP~ll-FFStYtlLvLFWAeIYy~A~~~~t~~lrp~f~~iN~vv 62 (167)
++..+......|.++ |+.||.++..+|..=....+.. ++.-......|.+.
T Consensus 33 ~~~~~~l~~~~~~l~~y~~SF~ii~~~W~~h~~~f~~i--~~~d~~~~~ln~~~ 84 (92)
T PF06736_consen 33 ESLWEALWALWPQLLAYLLSFFIIAMFWYSHHRIFRHI--KKVDRRIIWLNLLF 84 (92)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCHHHHHHHHHH
Confidence 446677777777766 9999999999997433333332 23333344455543
No 12
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=22.93 E-value=1.2e+02 Score=27.72 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=21.2
Q ss_pred HHHhhchhH------HHHHHHHHHHHHHHHHHHHhhc
Q 045433 16 VLLDLPSLL------CFSTYTLLVLFSAEIYHQARSL 46 (167)
Q Consensus 16 iL~dlP~ll------FFStYtlLvLFWAeIYy~A~~~ 46 (167)
...|+|.+. ..-...+.+.+|.|||..+.+.
T Consensus 241 ~~~dIP~l~i~~~~~~~i~lvm~vIi~~~IytT~vg~ 277 (349)
T COG3949 241 VNYDIPLLTIAKNFSPLIGLVMSVIIWLEIYTTTVGL 277 (349)
T ss_pred hccCCcHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666554 3334568899999999987664
No 13
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=21.36 E-value=3.5e+02 Score=22.00 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=20.5
Q ss_pred HHHHhhhcCCccchhhhhhheeeeehhhHHHHHhHHHHHH
Q 045433 99 QVICHAQCFPIESRDRQKKLYEVGFVTGIFCTCFLIRCIA 138 (167)
Q Consensus 99 kL~~~Lrrfp~eSkgr~kkl~eV~~vT~iC~~cFliRc~~ 138 (167)
....++++.+.+.|+..|++-.+..++.++..+.++-.++
T Consensus 190 ~~~~~l~~~~~~~~~~er~L~~is~~~~~~~~~~~~~~~~ 229 (275)
T PF02118_consen 190 ITYRRLRKLSKRIKSVERNLTIISFIISFVQLLIAIWQII 229 (275)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666554454455555555555544444444444
No 14
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=20.61 E-value=59 Score=27.29 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhhcCCccchhhhhhhee
Q 045433 91 IGILDIWWQVICHAQCFPIESRDRQKKLYE 120 (167)
Q Consensus 91 ~~Fl~yG~kL~~~Lrrfp~eSkgr~kkl~e 120 (167)
.--.++|.|.+.++|+.....+.+.||+|+
T Consensus 210 ~iii~cg~~~~~~i~~~~~~~S~~~~~lq~ 239 (307)
T PF10326_consen 210 FIIIYCGIKIYKKIKKLSSIMSSKTRKLQK 239 (307)
T ss_pred HHHHHHHhhhHHHHhccccccChhhHHHHH
Confidence 334789999999998766653344455554
No 15
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=20.37 E-value=3e+02 Score=24.67 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=40.0
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHHHHHhhc--c---cCCccceeeehhHHHHHhhhheeee
Q 045433 13 LEMVLLDLPSLLCFSTYTLLVLFSAEIYHQARSL--S---TNKLRPAYYIVNAIVYFIQRKQHTR 72 (167)
Q Consensus 13 ~~~iL~dlP~llFFStYtlLvLFWAeIYy~A~~~--~---t~~lrp~f~~iN~vvY~iqi~iwi~ 72 (167)
....++..=+-.-=.||++|. ++-.|+--.. + .+..+|.+.......-+.....|..
T Consensus 87 l~~~~ls~RCsfIs~sYaIL~---~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ 148 (310)
T PF10319_consen 87 LGQHLLSIRCSFISGSYAILH---IHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHV 148 (310)
T ss_pred HHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444455555556667999986 4666664433 2 5678899999888888888888876
Done!