Query 045433
Match_columns 167
No_of_seqs 92 out of 94
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 23:21:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045433.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045433hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u19a_ f.13.1.2 (A:) Rhodopsi 24.8 24 0.0018 25.6 3.1 61 91-151 217-284 (348)
2 d2fyuk1 f.23.15.1 (K:1-53) Sub 6.7 2.6E+02 0.019 16.4 4.5 32 6-37 4-35 (53)
3 d1ojha_ a.214.1.1 (A:) Phycobi 4.8 1.3E+02 0.0097 17.8 1.2 17 4-20 17-33 (52)
4 d1ctda_ a.39.1.5 (A:) Troponin 4.6 1.4E+02 0.01 16.1 1.2 11 139-149 8-18 (34)
5 d1p7ba2 f.14.1.1 (A:36-151) In 4.5 4.2E+02 0.031 16.3 5.3 44 2-45 1-52 (116)
6 d2ovrb1 a.158.1.1 (B:2263-2364 4.1 1.7E+02 0.012 17.6 1.4 19 7-25 21-39 (102)
7 d1yt8a3 c.46.1.2 (A:373-529) T 3.5 1.5E+02 0.011 19.6 0.8 17 2-18 1-17 (157)
8 d1a3qa2 b.2.5.3 (A:37-226) p52 3.4 34 0.0025 25.3 -3.1 14 146-159 163-177 (184)
9 d1cwpa_ b.121.4.5 (A:) Cucumov 3.4 1.8E+02 0.013 20.5 1.0 20 106-125 32-51 (149)
10 d1v77a_ c.6.3.2 (A:) Ribonucle 3.2 1.1E+02 0.0081 22.2 -0.3 10 149-158 90-99 (202)
No 1
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.75 E-value=24 Score=25.62 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhcCCccchh------hhhhh-eeeeehhhHHHHHhHHHHHHHHHHhcccCCCcc
Q 045433 91 IGILDIWWQVICHAQCFPIESRD------RQKKL-YEVGFVTGIFCTCFLIRCIAVAVSAFEKSADFD 151 (167)
Q Consensus 91 ~~Fl~yG~kL~~~Lrrfp~eSkg------r~kkl-~eV~~vT~iC~~cFliRc~~~~~sa~~~~~~ld 151 (167)
+...+.-.++..++|+-..+++. ++||. +-+..++.+-.+|.+--.++.......++.+.+
T Consensus 217 ~i~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~ 284 (348)
T d1u19a_ 217 IVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFG 284 (348)
T ss_dssp HHHHHHHTTTTTSSCSCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHHHHHhhhcccccccchhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCcccc
Confidence 33344445555666653332221 11222 235555566677777777777776666655544
No 2
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.74 E-value=2.6e+02 Score=16.45 Aligned_cols=32 Identities=9% Similarity=-0.081 Sum_probs=27.6
Q ss_pred ccCChHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 045433 6 QHGPLHELEMVLLDLPSLLCFSTYTLLVLFSA 37 (167)
Q Consensus 6 ~~~~p~~~~~iL~dlP~llFFStYtlLvLFWA 37 (167)
+.+-|+.++..-.-+|+...|.+=..+.+.|.
T Consensus 4 k~iG~k~~~ia~~wips~~~~G~a~gl~lvy~ 35 (53)
T d2fyuk1 4 RFLGPRYRQLARNWVPTASLWGAVGAVGLVWA 35 (53)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhheeeeee
Confidence 34668888888899999999999999999885
No 3
>d1ojha_ a.214.1.1 (A:) Phycobilisome degradation protein NblA {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.81 E-value=1.3e+02 Score=17.78 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=14.2
Q ss_pred CcccCChHHHHHHHHhh
Q 045433 4 WAQHGPLHELEMVLLDL 20 (167)
Q Consensus 4 ~v~~~~p~~~~~iL~dl 20 (167)
+|+...+|+++..|.++
T Consensus 17 qV~~mS~EQAqdfLv~L 33 (52)
T d1ojha_ 17 QVQNMSHDQAKDFLVKL 33 (52)
T ss_dssp HHHTCCHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHH
Confidence 47788999999998876
No 4
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.58 E-value=1.4e+02 Score=16.08 Aligned_cols=11 Identities=45% Similarity=0.613 Sum_probs=8.5
Q ss_pred HHHHhcccCCC
Q 045433 139 VAVSAFEKSAD 149 (167)
Q Consensus 139 ~~~sa~~~~~~ 149 (167)
-||-.|||++|
T Consensus 8 e~FRifDkNaD 18 (34)
T d1ctda_ 8 NAFRIFDKNAD 18 (34)
T ss_dssp HHHHTTCCSSS
T ss_pred HHHHHHccCCc
Confidence 36778999887
No 5
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=4.48 E-value=4.2e+02 Score=16.33 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=26.8
Q ss_pred CCCcccCCh----HHHHHHHHhhch----hHHHHHHHHHHHHHHHHHHHHhh
Q 045433 2 GPWAQHGPL----HELEMVLLDLPS----LLCFSTYTLLVLFSAEIYHQARS 45 (167)
Q Consensus 2 ~~~v~~~~p----~~~~~iL~dlP~----llFFStYtlLvLFWAeIYy~A~~ 45 (167)
+|.|+.-.| +-.-|-++++|- ..++..|.++.+++|-+|+-...
T Consensus 1 ~~~~~~~~p~~~~rd~~~~ll~~~~~~~l~~~~~~~~~~~~~fa~~y~~~~~ 52 (116)
T d1p7ba2 1 REVIAYGMPASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDA 52 (116)
T ss_dssp CCSSCEECCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSSSS
T ss_pred CchhhccCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355555333 234566777774 33566777788888888765443
No 6
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.06 E-value=1.7e+02 Score=17.62 Aligned_cols=19 Identities=21% Similarity=-0.178 Sum_probs=15.0
Q ss_pred cCChHHHHHHHHhhchhHH
Q 045433 7 HGPLHELEMVLLDLPSLLC 25 (167)
Q Consensus 7 ~~~p~~~~~iL~dlP~llF 25 (167)
.+++|++.+|+--||.--.
T Consensus 21 ~LP~Eil~~Ils~Ld~~dL 39 (102)
T d2ovrb1 21 LLPKELALYVLSFLEPKDL 39 (102)
T ss_dssp SSCHHHHHHHHTTSCHHHH
T ss_pred hCCHHHHHHHHHcCCHHHH
Confidence 4899999999988876543
No 7
>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.48 E-value=1.5e+02 Score=19.61 Aligned_cols=17 Identities=24% Similarity=-0.035 Sum_probs=12.7
Q ss_pred CCCcccCChHHHHHHHH
Q 045433 2 GPWAQHGPLHELEMVLL 18 (167)
Q Consensus 2 ~~~v~~~~p~~~~~iL~ 18 (167)
||.++.+.|+.+...+.
T Consensus 1 qP~~~~Is~~el~~~l~ 17 (157)
T d1yt8a3 1 QPRADTIDPTTLADWLG 17 (157)
T ss_dssp CCCCCEECHHHHHHHTT
T ss_pred CCCCCEECHHHHHHHHh
Confidence 78888888887776654
No 8
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.38 E-value=34 Score=25.27 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=9.8
Q ss_pred cCCCcc-ccCchhHH
Q 045433 146 KSADFD-VLNNPILH 159 (167)
Q Consensus 146 ~~~~ld-v~~hp~l~ 159 (167)
.+..+| |.++||-|
T Consensus 163 ~~~~l~PVvS~pI~d 177 (184)
T d1a3qa2 163 RSLPLKPVISQPIHD 177 (184)
T ss_dssp CCEECCCEECCCEEB
T ss_pred cCCCCCCeEeccccc
Confidence 345577 88888865
No 9
>d1cwpa_ b.121.4.5 (A:) Cucumovirus coat protein {Cowpea chlorotic mottle virus [TaxId: 12303]}
Probab=3.36 E-value=1.8e+02 Score=20.50 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=16.1
Q ss_pred cCCccchhhhhhheeeeehh
Q 045433 106 CFPIESRDRQKKLYEVGFVT 125 (167)
Q Consensus 106 rfp~eSkgr~kkl~eV~~vT 125 (167)
+.|.|....++|.-+||++.
T Consensus 32 ~lP~eLssE~nk~LKVgRvl 51 (149)
T d1cwpa_ 32 SLPNELSSERNKQLKVGRVL 51 (149)
T ss_dssp CCCGGGCSHHHHTCBEEEEE
T ss_pred ECChhhhhhhccccccceee
Confidence 47888888888888888764
No 10
>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.17 E-value=1.1e+02 Score=22.25 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=8.8
Q ss_pred CccccCchhH
Q 045433 149 DFDVLNNPIL 158 (167)
Q Consensus 149 ~ldv~~hp~l 158 (167)
++|+|.||.+
T Consensus 90 ~VDiL~~p~~ 99 (202)
T d1v77a_ 90 GVDAIISPWV 99 (202)
T ss_dssp TCSEEECTTT
T ss_pred CccEEecCcc
Confidence 6999999975
Done!