Query 045434
Match_columns 316
No_of_seqs 328 out of 1690
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 13:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03091 hypothetical protein; 100.0 8.9E-37 1.9E-41 297.7 11.8 132 1-132 1-132 (459)
2 PLN03212 Transcription repress 100.0 1.9E-36 4.2E-41 277.4 10.4 128 3-130 14-141 (249)
3 KOG0048 Transcription factor, 100.0 6.5E-32 1.4E-36 249.7 11.2 115 11-125 6-120 (238)
4 KOG0048 Transcription factor, 99.9 1.3E-27 2.8E-32 221.0 6.8 109 63-173 5-115 (238)
5 KOG0049 Transcription factor, 99.9 7.1E-26 1.5E-30 227.8 11.5 155 5-160 244-453 (939)
6 PLN03212 Transcription repress 99.9 4.4E-26 9.6E-31 209.3 8.0 117 47-172 12-130 (249)
7 PLN03091 hypothetical protein; 99.9 6.6E-25 1.4E-29 214.7 7.2 107 62-170 9-117 (459)
8 KOG0049 Transcription factor, 99.8 1.3E-20 2.8E-25 190.1 5.5 108 1-109 347-458 (939)
9 COG5147 REB1 Myb superfamily p 99.6 4.3E-16 9.3E-21 156.9 8.4 136 10-149 16-151 (512)
10 PF13921 Myb_DNA-bind_6: Myb-l 99.6 1E-16 2.3E-21 117.5 2.6 60 17-78 1-60 (60)
11 KOG0051 RNA polymerase I termi 99.6 2E-15 4.3E-20 153.7 8.0 149 13-164 383-566 (607)
12 KOG0050 mRNA splicing protein 99.5 4.2E-15 9.1E-20 147.6 5.0 107 12-120 5-111 (617)
13 PF13921 Myb_DNA-bind_6: Myb-l 99.5 1.7E-15 3.6E-20 111.0 1.6 59 70-128 1-59 (60)
14 PF00249 Myb_DNA-binding: Myb- 99.4 2.1E-13 4.6E-18 96.0 4.7 46 67-112 1-48 (48)
15 KOG0051 RNA polymerase I termi 99.4 4.2E-13 9.2E-18 136.8 6.9 153 12-168 306-510 (607)
16 PF00249 Myb_DNA-binding: Myb- 99.3 1.3E-13 2.8E-18 97.1 -0.2 48 14-61 1-48 (48)
17 smart00717 SANT SANT SWI3, AD 99.2 3.1E-11 6.7E-16 82.8 5.4 47 67-113 1-48 (49)
18 COG5147 REB1 Myb superfamily p 99.2 6.5E-12 1.4E-16 126.9 2.6 102 64-167 17-119 (512)
19 KOG0050 mRNA splicing protein 99.1 5.4E-11 1.2E-15 118.8 4.7 99 65-166 5-104 (617)
20 cd00167 SANT 'SWI3, ADA2, N-Co 99.1 2.4E-10 5.2E-15 77.2 5.5 44 69-112 1-45 (45)
21 smart00717 SANT SANT SWI3, AD 99.0 2E-10 4.4E-15 78.6 1.4 48 14-62 1-48 (49)
22 cd00167 SANT 'SWI3, ADA2, N-Co 98.8 1.3E-09 2.8E-14 73.6 1.1 44 16-60 1-44 (45)
23 TIGR01557 myb_SHAQKYF myb-like 97.8 7.2E-06 1.6E-10 60.2 1.5 49 13-61 2-54 (57)
24 KOG0457 Histone acetyltransfer 97.7 5.8E-05 1.2E-09 75.0 5.9 49 64-112 69-118 (438)
25 TIGR01557 myb_SHAQKYF myb-like 97.6 0.00012 2.7E-09 53.7 5.5 47 67-113 3-55 (57)
26 KOG0457 Histone acetyltransfer 97.6 1.7E-05 3.7E-10 78.7 0.8 88 12-100 70-179 (438)
27 TIGR02894 DNA_bind_RsfA transc 97.5 9.3E-05 2E-09 64.8 4.5 52 66-118 3-61 (161)
28 PF08914 Myb_DNA-bind_2: Rap1 97.3 0.00038 8.3E-09 52.5 4.2 51 67-117 2-62 (65)
29 COG5259 RSC8 RSC chromatin rem 97.0 0.0006 1.3E-08 68.4 4.3 45 66-110 278-322 (531)
30 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00054 1.2E-08 53.3 3.1 49 67-115 1-67 (90)
31 KOG1279 Chromatin remodeling f 96.9 0.0012 2.6E-08 67.6 5.2 46 66-111 252-297 (506)
32 PF13325 MCRS_N: N-terminal re 96.9 0.0014 3E-08 59.7 4.9 100 16-117 1-131 (199)
33 COG5259 RSC8 RSC chromatin rem 96.8 0.00031 6.8E-09 70.4 0.3 46 13-60 278-323 (531)
34 TIGR02894 DNA_bind_RsfA transc 96.7 0.00056 1.2E-08 60.0 0.6 50 12-63 2-57 (161)
35 KOG1279 Chromatin remodeling f 96.6 0.00099 2.2E-08 68.2 2.1 49 10-60 249-297 (506)
36 COG5114 Histone acetyltransfer 96.6 0.0031 6.8E-08 60.8 5.1 47 67-113 63-110 (432)
37 PRK13923 putative spore coat p 96.5 0.0029 6.3E-08 56.2 4.1 51 65-116 3-60 (170)
38 PF13873 Myb_DNA-bind_5: Myb/S 96.0 0.013 2.8E-07 44.7 5.0 49 67-115 2-72 (78)
39 COG5114 Histone acetyltransfer 95.6 0.0029 6.4E-08 61.0 -0.4 48 14-62 63-110 (432)
40 PF08914 Myb_DNA-bind_2: Rap1 95.3 0.0052 1.1E-07 46.3 0.3 51 14-64 2-60 (65)
41 PF13837 Myb_DNA-bind_4: Myb/S 95.2 0.0036 7.8E-08 48.6 -1.0 47 15-61 2-64 (90)
42 PLN03142 Probable chromatin-re 95.2 0.035 7.6E-07 61.6 6.2 99 16-115 826-987 (1033)
43 PRK13923 putative spore coat p 95.0 0.0046 1E-07 54.9 -0.9 50 12-63 3-58 (170)
44 PF13873 Myb_DNA-bind_5: Myb/S 93.3 0.038 8.3E-07 42.1 1.2 49 13-61 1-69 (78)
45 PF13325 MCRS_N: N-terminal re 92.9 0.48 1E-05 43.3 7.8 102 69-172 1-132 (199)
46 PF12776 Myb_DNA-bind_3: Myb/S 91.7 0.42 9.2E-06 37.3 5.3 45 69-113 1-63 (96)
47 PF09111 SLIDE: SLIDE; InterP 91.6 0.3 6.6E-06 41.0 4.5 52 64-115 46-113 (118)
48 KOG4282 Transcription factor G 91.2 0.32 7E-06 47.3 5.1 49 67-115 54-116 (345)
49 KOG2656 DNA methyltransferase 91.0 0.24 5.3E-06 49.2 3.9 83 36-119 75-188 (445)
50 COG5118 BDP1 Transcription ini 90.2 0.41 8.9E-06 47.5 4.7 43 69-111 367-409 (507)
51 COG5118 BDP1 Transcription ini 81.3 0.66 1.4E-05 46.1 1.0 46 12-59 363-408 (507)
52 PF09111 SLIDE: SLIDE; InterP 80.6 1 2.2E-05 37.8 1.8 35 10-44 45-82 (118)
53 KOG4468 Polycomb-group transcr 79.6 3.9 8.5E-05 43.0 5.9 65 67-132 88-162 (782)
54 KOG4167 Predicted DNA-binding 78.8 3.3 7.1E-05 44.5 5.1 45 67-111 619-663 (907)
55 KOG1194 Predicted DNA-binding 77.5 4.7 0.0001 41.1 5.6 47 66-112 186-232 (534)
56 KOG4282 Transcription factor G 75.6 0.93 2E-05 44.1 0.2 47 15-61 55-113 (345)
57 PF11626 Rap1_C: TRF2-interact 74.7 3 6.4E-05 32.8 2.8 29 10-41 43-79 (87)
58 PF08281 Sigma70_r4_2: Sigma-7 74.6 6.6 0.00014 27.3 4.3 41 72-113 12-52 (54)
59 KOG4167 Predicted DNA-binding 74.4 2.3 4.9E-05 45.6 2.6 44 14-59 619-662 (907)
60 PF13404 HTH_AsnC-type: AsnC-t 72.8 6.7 0.00015 26.7 3.8 38 73-111 3-41 (42)
61 PF11035 SnAPC_2_like: Small n 69.6 38 0.00082 33.3 9.4 94 67-161 21-122 (344)
62 PRK11179 DNA-binding transcrip 65.2 8.9 0.00019 32.9 4.0 46 72-118 8-54 (153)
63 PLN03142 Probable chromatin-re 64.7 16 0.00035 41.2 6.7 99 69-168 826-987 (1033)
64 PF11626 Rap1_C: TRF2-interact 62.3 7.9 0.00017 30.4 2.8 17 63-79 43-59 (87)
65 smart00595 MADF subfamily of S 60.5 9.6 0.00021 29.2 3.0 25 89-114 30-54 (89)
66 PRK11169 leucine-responsive tr 60.3 9.4 0.0002 33.2 3.2 46 72-118 13-59 (164)
67 PF01388 ARID: ARID/BRIGHT DNA 59.9 19 0.0004 28.0 4.6 39 76-114 39-90 (92)
68 PF13404 HTH_AsnC-type: AsnC-t 59.1 2.1 4.6E-05 29.2 -0.8 38 20-59 3-40 (42)
69 KOG0384 Chromodomain-helicase 56.9 9.9 0.00021 43.3 3.3 75 13-96 1132-1209(1373)
70 smart00501 BRIGHT BRIGHT, ARID 54.3 25 0.00053 27.6 4.4 40 76-115 35-87 (93)
71 PRK11179 DNA-binding transcrip 53.7 3.9 8.5E-05 35.1 -0.3 45 19-65 8-52 (153)
72 PF12776 Myb_DNA-bind_3: Myb/S 53.2 6.8 0.00015 30.4 1.1 44 16-59 1-60 (96)
73 KOG4468 Polycomb-group transcr 51.2 10 0.00022 40.0 2.2 49 13-62 87-144 (782)
74 KOG4329 DNA-binding protein [G 50.7 29 0.00062 34.8 5.1 43 68-110 278-321 (445)
75 PF04545 Sigma70_r4: Sigma-70, 49.9 32 0.00069 23.5 4.0 41 73-114 7-47 (50)
76 PRK11169 leucine-responsive tr 48.2 4.2 9.1E-05 35.4 -1.0 45 19-65 13-57 (164)
77 KOG2009 Transcription initiati 46.4 23 0.0005 37.4 3.9 45 66-110 408-452 (584)
78 PF09420 Nop16: Ribosome bioge 45.4 47 0.001 29.1 5.2 47 66-112 113-163 (164)
79 KOG2656 DNA methyltransferase 43.6 9.2 0.0002 38.4 0.5 50 11-61 127-181 (445)
80 PF10545 MADF_DNA_bdg: Alcohol 39.5 25 0.00055 26.0 2.3 26 89-114 29-55 (85)
81 smart00344 HTH_ASNC helix_turn 38.3 58 0.0013 25.6 4.4 45 73-118 3-48 (108)
82 TIGR02985 Sig70_bacteroi1 RNA 36.5 65 0.0014 26.4 4.6 28 85-113 128-155 (161)
83 KOG1194 Predicted DNA-binding 34.6 16 0.00034 37.5 0.5 45 13-59 186-230 (534)
84 PF07750 GcrA: GcrA cell cycle 33.8 43 0.00094 29.5 3.2 40 69-109 2-41 (162)
85 COG1522 Lrp Transcriptional re 32.5 68 0.0015 26.8 4.1 46 72-118 7-53 (154)
86 PF02954 HTH_8: Bacterial regu 32.2 72 0.0016 21.3 3.4 34 73-107 5-38 (42)
87 cd08319 Death_RAIDD Death doma 32.0 57 0.0012 25.6 3.2 29 75-104 2-30 (83)
88 KOG2009 Transcription initiati 29.8 33 0.00072 36.2 2.0 50 8-59 403-452 (584)
89 PRK09645 RNA polymerase sigma 29.7 1.1E+02 0.0024 25.8 5.1 36 86-122 134-172 (173)
90 PRK09413 IS2 repressor TnpA; R 27.7 79 0.0017 26.0 3.6 45 13-61 9-53 (121)
91 PF09197 Rap1-DNA-bind: Rap1, 27.7 1.6E+02 0.0034 24.4 5.2 47 69-115 1-78 (105)
92 PF11035 SnAPC_2_like: Small n 27.1 1.1E+02 0.0024 30.1 4.9 86 14-113 21-127 (344)
93 PF04504 DUF573: Protein of un 26.9 1.1E+02 0.0024 24.6 4.2 47 68-114 5-64 (98)
94 PLN03162 golden-2 like transcr 26.6 4.4E+02 0.0096 26.7 9.0 46 67-112 237-287 (526)
95 TIGR02937 sigma70-ECF RNA poly 26.4 1.1E+02 0.0023 24.3 4.1 30 84-114 124-153 (158)
96 KOG3841 TEF-1 and related tran 25.0 3.5E+02 0.0077 27.4 8.0 22 65-86 74-95 (455)
97 cd06171 Sigma70_r4 Sigma70, re 24.6 1.6E+02 0.0034 18.9 4.1 35 75-110 15-49 (55)
98 PF07750 GcrA: GcrA cell cycle 24.6 41 0.00089 29.6 1.4 33 16-50 2-35 (162)
99 cd08803 Death_ank3 Death domai 23.7 1.1E+02 0.0023 24.0 3.5 29 75-104 4-32 (84)
100 PF07638 Sigma70_ECF: ECF sigm 22.8 1.8E+02 0.0039 25.4 5.2 36 76-112 141-176 (185)
101 smart00344 HTH_ASNC helix_turn 22.5 29 0.00064 27.4 0.1 43 20-64 3-45 (108)
102 PF05263 DUF722: Protein of un 22.4 1.5E+02 0.0032 25.4 4.3 19 87-106 100-118 (130)
103 KOG0384 Chromodomain-helicase 22.2 53 0.0011 37.8 1.9 25 69-93 1135-1160(1373)
104 PRK11924 RNA polymerase sigma 21.5 1.5E+02 0.0031 24.8 4.2 27 85-112 140-166 (179)
105 PF10440 WIYLD: Ubiquitin-bind 21.5 67 0.0014 24.3 1.8 19 76-94 30-48 (65)
106 COG1522 Lrp Transcriptional re 21.2 27 0.00058 29.3 -0.5 45 19-65 7-51 (154)
107 PRK09652 RNA polymerase sigma 20.2 1.7E+02 0.0036 24.5 4.3 27 85-112 143-169 (182)
108 cd01852 AIG1 AIG1 (avrRpt2-ind 20.2 2.4E+02 0.0053 24.5 5.5 69 16-96 95-163 (196)
No 1
>PLN03091 hypothetical protein; Provisional
Probab=100.00 E-value=8.9e-37 Score=297.73 Aligned_cols=132 Identities=64% Similarity=1.210 Sum_probs=127.9
Q ss_pred CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHH
Q 045434 1 MGRSPCCDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILN 80 (316)
Q Consensus 1 mgR~~~~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~ 80 (316)
|||++||++..++||+||+|||++|+++|.+||..+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++
T Consensus 1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe 80 (459)
T PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80 (459)
T ss_pred CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHhCCchhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchh
Q 045434 81 LHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDV 132 (316)
Q Consensus 81 lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l 132 (316)
++++||.+|..||+.|+|||+++||+||+.+|++++++.+..+.+++++.+.
T Consensus 81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~ 132 (459)
T PLN03091 81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEV 132 (459)
T ss_pred HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc
Confidence 9999999999999999999999999999999999999999999888887654
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=100.00 E-value=1.9e-36 Score=277.45 Aligned_cols=128 Identities=63% Similarity=1.276 Sum_probs=123.5
Q ss_pred CCCccCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHH
Q 045434 3 RSPCCDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLH 82 (316)
Q Consensus 3 R~~~~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv 82 (316)
|.|||+++++++++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++++||.|||++|++++
T Consensus 14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~ 93 (249)
T PLN03212 14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH 93 (249)
T ss_pred CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999978999999999999999999999999999999999999
Q ss_pred HHhCCchhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccc
Q 045434 83 SILGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRT 130 (316)
Q Consensus 83 ~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~ 130 (316)
.+||++|..||+.|+|||+++||+||+.++++++.+.+.++++..++.
T Consensus 94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~ 141 (249)
T PLN03212 94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD 141 (249)
T ss_pred HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999988877654
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.97 E-value=6.5e-32 Score=249.65 Aligned_cols=115 Identities=68% Similarity=1.215 Sum_probs=108.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 045434 11 GLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWS 90 (316)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~ 90 (316)
.+.||+||+|||++|+++|++||+++|..|++.+|++|++++||.||.|||+|++++|.||+|||++|++++..+|++|+
T Consensus 6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs 85 (238)
T KOG0048|consen 6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS 85 (238)
T ss_pred cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence 35579999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCC
Q 045434 91 AIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMT 125 (316)
Q Consensus 91 ~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~ee 125 (316)
.||++|||||++.+|++|+..|++++.+....+..
T Consensus 86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~ 120 (238)
T KOG0048|consen 86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPST 120 (238)
T ss_pred HHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999988744333
No 4
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.94 E-value=1.3e-27 Score=220.98 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=101.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhh
Q 045434 63 PDIKRGKFSQEEEQTILNLHSILG-NKWSAIAGHLP-GRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLI 140 (316)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~ 140 (316)
+.+.||+||+|||++|+++|++|| ++|..|++.++ +|++++||.||.+||+|.++++.||++||+.|+.++..+| +
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G--N 82 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLG--N 82 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHC--c
Confidence 345579999999999999999999 56999999999 9999999999999999999999999999999999999999 8
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHHHHHHhh
Q 045434 141 ALANLKELMENHTWEEQAVRLQAEMTKLQYLQY 173 (316)
Q Consensus 141 ~w~~Ia~~l~~rt~n~~k~r~q~~~~k~~~lq~ 173 (316)
+|+.||++|||||||+|||+|+++++|+.....
T Consensus 83 rWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 83 RWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999977655443
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.93 E-value=7.1e-26 Score=227.82 Aligned_cols=155 Identities=19% Similarity=0.299 Sum_probs=144.5
Q ss_pred CccCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc------------------------------
Q 045434 5 PCCDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCR------------------------------ 54 (316)
Q Consensus 5 ~~~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr------------------------------ 54 (316)
.....|.++|..|+.|||++|..+...+|+.+|.+||..+|.+|+..||.
T Consensus 244 ~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~ 323 (939)
T KOG0049|consen 244 YNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKIT 323 (939)
T ss_pred hhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHh
Confidence 34577999999999999999999999999999999999999889999997
Q ss_pred ------------------------ccccccccCCCCCCCCCHHHHHHHHHHHHHhCCc-hhhhhccCCCCCHHHHHHHHH
Q 045434 55 ------------------------LRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNK-WSAIAGHLPGRTDNEIKNFWN 109 (316)
Q Consensus 55 ------------------------~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~-W~~IA~~lpgRT~~qcr~Rw~ 109 (316)
.||...|+|.+++|+||.+||.+|+.+|.+||++ |.+|...+|||++.|||+||.
T Consensus 324 ~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~ 403 (939)
T KOG0049|consen 324 SINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYT 403 (939)
T ss_pred hccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHH
Confidence 6888889999999999999999999999999977 999999999999999999999
Q ss_pred HHhHHHhhhCCCCCCCCCccchhhhcCChhhhHHHHHHhccCCChHHHHHH
Q 045434 110 THLKKKLIQMGFDPMTHRPRTDVFSSLPHLIALANLKELMENHTWEEQAVR 160 (316)
Q Consensus 110 ~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~w~~Ia~~l~~rt~n~~k~r 160 (316)
+.|...++.+.|+-.||+.|+.++..+| ..+|++||.+|+++|..+...|
T Consensus 404 nvL~~s~K~~rW~l~edeqL~~~V~~YG-~g~WakcA~~Lp~~t~~q~~rr 453 (939)
T KOG0049|consen 404 NVLNRSAKVERWTLVEDEQLLYAVKVYG-KGNWAKCAMLLPKKTSRQLRRR 453 (939)
T ss_pred HHHHHhhccCceeecchHHHHHHHHHHc-cchHHHHHHHccccchhHHHHH
Confidence 9999999999999999999999999998 6899999999999999765554
No 6
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.93 E-value=4.4e-26 Score=209.28 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=106.7
Q ss_pred ccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC-CCCCHHHHHHHHHHHhHHHhhhCCCCCC
Q 045434 47 NRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILG-NKWSAIAGHL-PGRTDNEIKNFWNTHLKKKLIQMGFDPM 124 (316)
Q Consensus 47 ~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~l-pgRT~~qcr~Rw~~~L~~~l~~~~~t~e 124 (316)
.|+..-|. ++.+++++||+|||++|+++|++|| .+|..||+.+ ++||++|||+||.++|+|.+++++||++
T Consensus 12 ~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~E 84 (249)
T PLN03212 12 KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSD 84 (249)
T ss_pred CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChH
Confidence 56655553 3578999999999999999999999 5799999998 5999999999999999999999999999
Q ss_pred CCCccchhhhcCChhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHHh
Q 045434 125 THRPRTDVFSSLPHLIALANLKELMENHTWEEQAVRLQAEMTKLQYLQ 172 (316)
Q Consensus 125 ed~~l~~l~~~lg~~~~w~~Ia~~l~~rt~n~~k~r~q~~~~k~~~lq 172 (316)
||+.|+.++..+| .+|+.||..|+|||++++||||+.+++|....+
T Consensus 85 ED~lLlel~~~~G--nKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~ 130 (249)
T PLN03212 85 EEDLILRLHRLLG--NRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130 (249)
T ss_pred HHHHHHHHHHhcc--ccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhc
Confidence 9999999999999 899999999999999999999999998875543
No 7
>PLN03091 hypothetical protein; Provisional
Probab=99.91 E-value=6.6e-25 Score=214.74 Aligned_cols=107 Identities=16% Similarity=0.241 Sum_probs=101.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChh
Q 045434 62 RPDIKRGKFSQEEEQTILNLHSILG-NKWSAIAGHLP-GRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHL 139 (316)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~ 139 (316)
+..+++++||+|||++|+++|.+|| .+|..||+.++ +|+++|||+||.++|+|.+++++||++||+.|++++..+|
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~G-- 86 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLG-- 86 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhC--
Confidence 4578999999999999999999999 56999999985 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 045434 140 IALANLKELMENHTWEEQAVRLQAEMTKLQY 170 (316)
Q Consensus 140 ~~w~~Ia~~l~~rt~n~~k~r~q~~~~k~~~ 170 (316)
.+|+.||.+|+|||+++|||||+..++|+..
T Consensus 87 nKWskIAk~LPGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 87 NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred cchHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998887643
No 8
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.81 E-value=1.3e-20 Score=190.12 Aligned_cols=108 Identities=26% Similarity=0.446 Sum_probs=101.8
Q ss_pred CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHH
Q 045434 1 MGRSPCCDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILN 80 (316)
Q Consensus 1 mgR~~~~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~ 80 (316)
+|||..+.+|++++|+||.+||-+|..+|.+||..+|.+|-+.+ |||+..|||+||.|.|+...|++.||-.||+.|+.
T Consensus 347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v-PnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~ 425 (939)
T KOG0049|consen 347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV-PNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY 425 (939)
T ss_pred hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhc-CCccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence 58999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HHHHhC-CchhhhhccCCCCCHHH---HHHHHH
Q 045434 81 LHSILG-NKWSAIAGHLPGRTDNE---IKNFWN 109 (316)
Q Consensus 81 lv~~~G-~~W~~IA~~lpgRT~~q---cr~Rw~ 109 (316)
+|.+|| ++|.+||..||.||++| ||.|+.
T Consensus 426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~ 458 (939)
T KOG0049|consen 426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLI 458 (939)
T ss_pred HHHHHccchHHHHHHHccccchhHHHHHHHHHH
Confidence 999999 78999999999999954 555553
No 9
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.63 E-value=4.3e-16 Score=156.95 Aligned_cols=136 Identities=25% Similarity=0.441 Sum_probs=116.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 045434 10 SGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKW 89 (316)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W 89 (316)
..++.|.|+..||+.|..+|++||..+|.+||..+. -|++++|+.||.++++|.++++.|+.|||++|+.+..++|..|
T Consensus 16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w 94 (512)
T COG5147 16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94 (512)
T ss_pred ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence 457889999999999999999999999999999996 6999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhhhHHHHHHhc
Q 045434 90 SAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLIALANLKELM 149 (316)
Q Consensus 90 ~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~w~~Ia~~l 149 (316)
..||..+++|+..+|.+||.+.+..... ..|+...+......+..+. ..|+.+....
T Consensus 95 stia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~f~--~~~~~~~~~~ 151 (512)
T COG5147 95 STIADYKDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDPFN--ENSARRPDIY 151 (512)
T ss_pred hhhccccCccchHHHHHHHHHHhhhhhc-cccccccchhhccccCchh--hhhhhhhhhh
Confidence 9999999999999999999999988777 5555555554444444444 4444444443
No 10
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.63 E-value=1e-16 Score=117.47 Aligned_cols=60 Identities=43% Similarity=0.936 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHH
Q 045434 17 WTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTI 78 (316)
Q Consensus 17 WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~L 78 (316)
||+|||++|+++|.+|| .+|..||+.|| +|+..+|+.||.++|++.+++++||.+||++|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 59999999995 89999999999999999999999999999987
No 11
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.59 E-value=2e-15 Score=153.66 Aligned_cols=149 Identities=24% Similarity=0.434 Sum_probs=120.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCC--CCCCCCHHHHHHHHHHHH-------
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI--KRGKFSQEEEQTILNLHS------- 83 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~l--kkg~WT~EED~~Ll~lv~------- 83 (316)
.+|+||+||++.|..+|..+| ++|..|++.+| |.+..|++||+++..++- +++.||.||+++|+++|.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~ 459 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL 459 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999 69999999997 999999999999998874 899999999999999995
Q ss_pred Hh-------------------CCchhhhhccCCCCCHHHHHHHHHHHhHH-HhhhCCCCCCCCCc-cchhhhcC----Ch
Q 045434 84 IL-------------------GNKWSAIAGHLPGRTDNEIKNFWNTHLKK-KLIQMGFDPMTHRP-RTDVFSSL----PH 138 (316)
Q Consensus 84 ~~-------------------G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~-~l~~~~~t~eed~~-l~~l~~~l----g~ 138 (316)
++ +-+|..|++.+..|+..|||-+|+.++.. ..++..|....+.. |++-+..+ ..
T Consensus 460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~ 539 (607)
T KOG0051|consen 460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEES 539 (607)
T ss_pred cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCC
Confidence 33 12499999999999999999999988754 45555666532222 22222222 24
Q ss_pred hhhHHHHHHhccCCC-hHHHHHHHHHH
Q 045434 139 LIALANLKELMENHT-WEEQAVRLQAE 164 (316)
Q Consensus 139 ~~~w~~Ia~~l~~rt-~n~~k~r~q~~ 164 (316)
.+.|..|+...+|.. ..+++.+|..+
T Consensus 540 ~IDW~~l~~~~~g~~~~~e~r~q~~~l 566 (607)
T KOG0051|consen 540 PIDWKSLAEYAPGESTGEELRLQFERL 566 (607)
T ss_pred ccCHHHHHHhCCCCCcHHHHHHHHHhH
Confidence 489999999999998 66666666443
No 12
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=4.2e-15 Score=147.64 Aligned_cols=107 Identities=28% Similarity=0.583 Sum_probs=101.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 045434 12 LKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWSA 91 (316)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~ 91 (316)
++.|-|+.-||+.|..+|.+||.+.|.+|++.+ ...+++||+.||..+|+|.+++..|+.|||++|+.+...+...|..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll-~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt 83 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLL-NRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT 83 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHH-hhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence 578999999999999999999999999999999 5899999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCHHHHHHHHHHHhHHHhhhCC
Q 045434 92 IAGHLPGRTDNEIKNFWNTHLKKKLIQMG 120 (316)
Q Consensus 92 IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~ 120 (316)
|+..| ||++.||-+||.+++........
T Consensus 84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~~ 111 (617)
T KOG0050|consen 84 IADIM-GRTSQQCLERYNNLLDVYVSYHY 111 (617)
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHHhhhc
Confidence 99999 99999999999999987766543
No 13
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.54 E-value=1.7e-15 Score=111.04 Aligned_cols=59 Identities=31% Similarity=0.592 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCc
Q 045434 70 FSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRP 128 (316)
Q Consensus 70 WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~ 128 (316)
||+|||++|+++|..||.+|..||+.|+.||+.+|++||.++|++.+.+++|+++||..
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~ 59 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQR 59 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhc
Confidence 99999999999999999999999999966999999999999999999999999998754
No 14
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.41 E-value=2.1e-13 Score=96.03 Aligned_cols=46 Identities=30% Similarity=0.671 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc-hhhhhccCC-CCCHHHHHHHHHHHh
Q 045434 67 RGKFSQEEEQTILNLHSILGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 112 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~-W~~IA~~lp-gRT~~qcr~Rw~~~L 112 (316)
|++||.|||++|+++|.+||.. |..||..|+ +||..||++||++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 6899999999999999999988 999999999 999999999999875
No 15
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.39 E-value=4.2e-13 Score=136.82 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=127.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----CC-----------C--------ccccccccccccccccccc---cccccccCCC
Q 045434 12 LKKGPWTSDEDQKLVKYIQKHG----HG-----------S--------WRALPKLAGLNRCGKSCRL---RWTNYLRPDI 65 (316)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~G----~~-----------~--------W~~IA~~lgp~Rt~~qCr~---Rw~~~L~p~l 65 (316)
++-+.|+.+||..|...|..|- -. + |..|.+.| |-|+...++. |-.+.+.+
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~L-p~R~~~siy~~~rR~y~~FE~-- 382 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLL-PYRDRKSIYHHLRRAYTPFEN-- 382 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhc-CcccchhHHHHHHhcCCcccc--
Confidence 3458999999999999998872 11 1 56777778 6799998877 44444444
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhHHH--hhhCCCCCCCCCccchhhh-------cC
Q 045434 66 KRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLKKK--LIQMGFDPMTHRPRTDVFS-------SL 136 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~--l~~~~~t~eed~~l~~l~~-------~l 136 (316)
++|.||+||++.|..+|.++|+.|..|++.| ||.+..||+||.++.... .+++.|+.+|.+.|++++. +.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~ 461 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQP 461 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999 999999999999999888 5889999999999998874 11
Q ss_pred ------------C-----hhhhHHHHHHhccCCChHHHHHHHHHHHHHH
Q 045434 137 ------------P-----HLIALANLKELMENHTWEEQAVRLQAEMTKL 168 (316)
Q Consensus 137 ------------g-----~~~~w~~Ia~~l~~rt~n~~k~r~q~~~~k~ 168 (316)
+ --+.|..|++.+..|+.-+++-+|+.++.+-
T Consensus 462 q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~ 510 (607)
T KOG0051|consen 462 QASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSP 510 (607)
T ss_pred cccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhH
Confidence 1 1378999999999999999999998866553
No 16
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.34 E-value=1.3e-13 Score=97.13 Aligned_cols=48 Identities=40% Similarity=0.843 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 045434 14 KGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L 61 (316)
|++||+|||++|+++|.+||.++|..||+.++.+||..||+.||.++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 689999999999999999997669999999955999999999998864
No 17
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.19 E-value=3.1e-11 Score=82.75 Aligned_cols=47 Identities=38% Similarity=0.821 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 67 RGKFSQEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
++.||++||.+|+.++..|| .+|..||..|++||+.+|++||+++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 18
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.19 E-value=6.5e-12 Score=126.94 Aligned_cols=102 Identities=22% Similarity=0.359 Sum_probs=95.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhhhH
Q 045434 64 DIKRGKFSQEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLIAL 142 (316)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~w 142 (316)
..+.|.|+..||+.|..+|+.|| ++|+.||..+..|++++|+.||++++.+.+++..|+.+||..++++.+.+| .+|
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~--~~w 94 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELG--TQW 94 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcC--chh
Confidence 45788999999999999999999 559999999988999999999999999999999999999999999999999 889
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHH
Q 045434 143 ANLKELMENHTWEEQAVRLQAEMTK 167 (316)
Q Consensus 143 ~~Ia~~l~~rt~n~~k~r~q~~~~k 167 (316)
+.|+..+++|+..++.+||...+.-
T Consensus 95 stia~~~d~rt~~~~~ery~~~~~~ 119 (512)
T COG5147 95 STIADYKDRRTAQQCVERYVNTLED 119 (512)
T ss_pred hhhccccCccchHHHHHHHHHHhhh
Confidence 9999999999999999999875543
No 19
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=5.4e-11 Score=118.76 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=92.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhhhHH
Q 045434 65 IKRGKFSQEEEQTILNLHSILGN-KWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLIALA 143 (316)
Q Consensus 65 lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~w~ 143 (316)
++.|.|+.-||+.|..+|.+||. .|+.|+..++-++++||+.||..++++.+++..|+.+||..++.++.-++ ..|.
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p--~qwr 82 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEP--TQWR 82 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcC--Cccc
Confidence 57889999999999999999995 59999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHhccCCChHHHHHHHHHHHH
Q 045434 144 NLKELMENHTWEEQAVRLQAEMT 166 (316)
Q Consensus 144 ~Ia~~l~~rt~n~~k~r~q~~~~ 166 (316)
.|+..| ||+.+++..|+..++-
T Consensus 83 tIa~i~-gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 83 TIADIM-GRTSQQCLERYNNLLD 104 (617)
T ss_pred hHHHHh-hhhHHHHHHHHHHHHH
Confidence 999988 5999999999887553
No 20
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.08 E-value=2.4e-10 Score=77.18 Aligned_cols=44 Identities=34% Similarity=0.709 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHh
Q 045434 69 KFSQEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHL 112 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L 112 (316)
+||.+||..|+.++..|| .+|..||+.|++||..+|++||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 89999999999999999999998763
No 21
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.96 E-value=2e-10 Score=78.63 Aligned_cols=48 Identities=38% Similarity=0.855 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 045434 14 KGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR 62 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~ 62 (316)
++.||++||++|+.++..||..+|..||+.+ ++|+..+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~-~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKEL-PGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc-CCCCHHHHHHHHHHHcC
Confidence 4789999999999999999977999999999 49999999999998664
No 22
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.81 E-value=1.3e-09 Score=73.56 Aligned_cols=44 Identities=39% Similarity=0.842 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 045434 16 PWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60 (316)
Q Consensus 16 ~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~ 60 (316)
+||.+||+.|+.++.+||..+|..||+.++ +|+..+|+.||.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence 599999999999999999779999999994 89999999999865
No 23
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.83 E-value=7.2e-06 Score=60.24 Aligned_cols=49 Identities=18% Similarity=0.395 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-ccccccccccccc
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGHGSW---RALPKLAGLNR-CGKSCRLRWTNYL 61 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~~~W---~~IA~~lgp~R-t~~qCr~Rw~~~L 61 (316)
++-.||+||.++++++|+.+|.++| ..|++.++..| |..||+.+++.|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999998899 99999887666 9999999887764
No 24
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.69 E-value=5.8e-05 Score=74.99 Aligned_cols=49 Identities=27% Similarity=0.498 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHh
Q 045434 64 DIKRGKFSQEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHL 112 (316)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L 112 (316)
.+-...||.+|+..|++++..|| |+|..||.+++.|+..+|+++|.+++
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 34456899999999999999999 99999999999999999999998654
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.64 E-value=0.00012 Score=53.73 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ch---hhhhccCC-CC-CHHHHHHHHHHHhH
Q 045434 67 RGKFSQEEEQTILNLHSILGN-KW---SAIAGHLP-GR-TDNEIKNFWNTHLK 113 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~-~W---~~IA~~lp-gR-T~~qcr~Rw~~~L~ 113 (316)
+-.||+||..+.+++|+.+|. +| ..|+..|. .| |..||+.+...|..
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999995 89 99999885 45 99999999887753
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.61 E-value=1.7e-05 Score=78.68 Aligned_cols=88 Identities=20% Similarity=0.405 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc-CCCCCCCC-------CHHHHHHHHHH-H
Q 045434 12 LKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR-PDIKRGKF-------SQEEEQTILNL-H 82 (316)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~-p~lkkg~W-------T~EED~~Ll~l-v 82 (316)
+-...||.+|+-+|++++..||.+||..||+.+| .|+..+|+++|.+++- ..+-.-+| ...||....+- +
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~~~ 148 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKNRA 148 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhccccc
Confidence 4567899999999999999999999999999999 9999999999988643 22222222 23455444444 3
Q ss_pred HHhCC-------------chhhhhccCCCCC
Q 045434 83 SILGN-------------KWSAIAGHLPGRT 100 (316)
Q Consensus 83 ~~~G~-------------~W~~IA~~lpgRT 100 (316)
..++. .=.+|+..||+|.
T Consensus 149 ~~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~ 179 (438)
T KOG0457|consen 149 EPFQPTDLVPRKPGVSNPLRREISGYMPGRL 179 (438)
T ss_pred ccCCCCCCCCCCCCCCCchHHHHhhhCccch
Confidence 33332 1357788888885
No 27
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.55 E-value=9.3e-05 Score=64.85 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CCc----hhhhhccCCCCCHHHHHHHHHHHhHHHhhh
Q 045434 66 KRGKFSQEEEQTILNLHSIL---GNK----WSAIAGHLPGRTDNEIKNFWNTHLKKKLIQ 118 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~---G~~----W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~ 118 (316)
+...||.|||.+|.+.|-.| |+. ...|+..| +||+..|.-||+.++++....
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence 46789999999999999888 332 99999999 999999999999999987653
No 28
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=97.27 E-value=0.00038 Score=52.47 Aligned_cols=51 Identities=18% Similarity=0.364 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-------Cc--hhhhhccCC-CCCHHHHHHHHHHHhHHHhh
Q 045434 67 RGKFSQEEEQTILNLHSILG-------NK--WSAIAGHLP-GRTDNEIKNFWNTHLKKKLI 117 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G-------~~--W~~IA~~lp-gRT~~qcr~Rw~~~L~~~l~ 117 (316)
+.+||.|||..|++.|..+. ++ |.++++.-+ .+|-.+.|+||...|.++..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~ 62 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR 62 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence 45899999999999996652 23 999999887 99999999999998877653
No 29
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.04 E-value=0.0006 Score=68.42 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 045434 66 KRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNT 110 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~ 110 (316)
....||.+|..+|++.|+.||..|.+||++++.||..||-.||.+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~ 322 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ 322 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence 345899999999999999999999999999999999999999975
No 30
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.03 E-value=0.00054 Score=53.31 Aligned_cols=49 Identities=29% Similarity=0.506 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHH------hC--C------chhhhhccC----CCCCHHHHHHHHHHHhHHH
Q 045434 67 RGKFSQEEEQTILNLHSI------LG--N------KWSAIAGHL----PGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~------~G--~------~W~~IA~~l----pgRT~~qcr~Rw~~~L~~~ 115 (316)
+..||.+|...|+.++.. ++ + -|..||..| ..||+.||++||.++.+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 357999999999999977 21 1 299999988 3699999999999866544
No 31
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.90 E-value=0.0012 Score=67.62 Aligned_cols=46 Identities=15% Similarity=0.371 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 045434 66 KRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTH 111 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~ 111 (316)
.++.||.+|..+|+++|+.||..|.+||.++++||..||-.++..+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 4668999999999999999999999999999999999999999753
No 32
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.89 E-value=0.0014 Score=59.67 Aligned_cols=100 Identities=19% Similarity=0.349 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccc--cccccccccccccccc-cCC--------------------CCCCCCCH
Q 045434 16 PWTSDEDQKLVKYIQKHGHGSWRALPKLAG--LNRCGKSCRLRWTNYL-RPD--------------------IKRGKFSQ 72 (316)
Q Consensus 16 ~WT~EED~~L~~~V~k~G~~~W~~IA~~lg--p~Rt~~qCr~Rw~~~L-~p~--------------------lkkg~WT~ 72 (316)
+|++++|-.|+.+|..-. +-..|+..+. ..-|-..+.+||+..| +|. ..+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 699999999999998765 5666665332 2345566778998765 222 14668999
Q ss_pred HHHHHHHHHHHHhCC---chhhhhc----cC-CCCCHHHHHHHHHHHhHHHhh
Q 045434 73 EEEQTILNLHSILGN---KWSAIAG----HL-PGRTDNEIKNFWNTHLKKKLI 117 (316)
Q Consensus 73 EED~~Ll~lv~~~G~---~W~~IA~----~l-pgRT~~qcr~Rw~~~L~~~l~ 117 (316)
+||++|......... .+.+|=. .+ ++||+++..++|..+.+..+.
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL 131 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL 131 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence 999999997766543 3666632 22 689999999999976665554
No 33
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.83 E-value=0.00031 Score=70.41 Aligned_cols=46 Identities=20% Similarity=0.498 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~ 60 (316)
....||.+|..+|+++|+.|| .+|.+||+++| +|+..||..|+.++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 567999999999999999999 59999999999 99999999999764
No 34
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.65 E-value=0.00056 Score=60.02 Aligned_cols=50 Identities=24% Similarity=0.626 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC------CCccccccccccccccccccccccccccC
Q 045434 12 LKKGPWTSDEDQKLVKYIQKHGH------GSWRALPKLAGLNRCGKSCRLRWTNYLRP 63 (316)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~G~------~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p 63 (316)
.+...||.|||.+|.+.|-+|=. .-+.+|++.++ ||+..|.-||+.+++.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence 35778999999999999999821 14889999995 9999999999998874
No 35
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.62 E-value=0.00099 Score=68.21 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=44.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 045434 10 SGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60 (316)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~ 60 (316)
..--++.||.+|+.+|+++|.+|| .+|.+||.++| +|+..||..++.+.
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg-~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG-TKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence 455688999999999999999999 59999999998 99999999998763
No 36
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.58 E-value=0.0031 Score=60.82 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 67 RGKFSQEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
-..|+..|+.+|++...-.| ++|..||.+++.|+...||++|..+..
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 34799999999999999999 899999999999999999999987654
No 37
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=96.50 E-value=0.0029 Score=56.22 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc-------hhhhhccCCCCCHHHHHHHHHHHhHHHh
Q 045434 65 IKRGKFSQEEEQTILNLHSILGNK-------WSAIAGHLPGRTDNEIKNFWNTHLKKKL 116 (316)
Q Consensus 65 lkkg~WT~EED~~Ll~lv~~~G~~-------W~~IA~~lpgRT~~qcr~Rw~~~L~~~l 116 (316)
.+...||.|||.+|.+.|-.|+.. ...++..| +||..+|..||+.++++..
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence 356789999999999999888621 77778888 9999999999999888543
No 38
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.04 E-value=0.013 Score=44.68 Aligned_cols=49 Identities=29% Similarity=0.487 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC----C-------------chhhhhccC-----CCCCHHHHHHHHHHHhHHH
Q 045434 67 RGKFSQEEEQTILNLHSILG----N-------------KWSAIAGHL-----PGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G----~-------------~W~~IA~~l-----pgRT~~qcr~Rw~~~L~~~ 115 (316)
+..||.+|.+.|+++|.+|. + -|..|+..| +.||..++|.+|.++....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 46799999999999998872 1 299999877 2699999999999876543
No 39
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.56 E-value=0.0029 Score=61.02 Aligned_cols=48 Identities=19% Similarity=0.525 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 045434 14 KGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR 62 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~ 62 (316)
.-.|+..|+.+|++..+..|.+||..||..+| .|+...|+.+|.+++.
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence 34699999999999999999999999999999 9999999999988765
No 40
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.31 E-value=0.0052 Score=46.31 Aligned_cols=51 Identities=25% Similarity=0.536 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC------CC--ccccccccccccccccccccccccccCC
Q 045434 14 KGPWTSDEDQKLVKYIQKHGH------GS--WRALPKLAGLNRCGKSCRLRWTNYLRPD 64 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~------~~--W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~ 64 (316)
+-++|.|||+.|++.|..+.. ++ |.++++.--+.+|-.+-|+||.+.|.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 357999999999999977632 22 9999876623899999999999988764
No 41
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.18 E-value=0.0036 Score=48.62 Aligned_cols=47 Identities=26% Similarity=0.656 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHH--h----C---C--C--Ccccccccc---ccccccccccccccccc
Q 045434 15 GPWTSDEDQKLVKYIQK--H----G---H--G--SWRALPKLA---GLNRCGKSCRLRWTNYL 61 (316)
Q Consensus 15 g~WT~EED~~L~~~V~k--~----G---~--~--~W~~IA~~l---gp~Rt~~qCr~Rw~~~L 61 (316)
..||.+|...|++++.. + + . . -|..||..| |..|++.||+.||.++.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 57999999999998877 2 1 1 1 399999754 67899999999998753
No 42
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.15 E-value=0.035 Score=61.65 Aligned_cols=99 Identities=14% Similarity=0.321 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc------c---------------------
Q 045434 16 PWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRL-------RWTNY------L--------------------- 61 (316)
Q Consensus 16 ~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~-------Rw~~~------L--------------------- 61 (316)
.|+.-|=..++.+..+||..+-..||..++ +++...++. ||..+ +
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~ 904 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG 904 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888889999999888999999885 788766651 22211 0
Q ss_pred ----------------cCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhcc------------CCCCCHHHHHHHHHHHh
Q 045434 62 ----------------RPDIKRGKFSQEEEQTILNLHSILG-NKWSAIAGH------------LPGRTDNEIKNFWNTHL 112 (316)
Q Consensus 62 ----------------~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~------------lpgRT~~qcr~Rw~~~L 112 (316)
-+..++..||.|||..|+-.+.+|| ++|..|-.. +..||+..+..|...++
T Consensus 905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~ 984 (1033)
T PLN03142 905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI 984 (1033)
T ss_pred HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence 0222345699999999999999999 779998432 25799999999999888
Q ss_pred HHH
Q 045434 113 KKK 115 (316)
Q Consensus 113 ~~~ 115 (316)
+-.
T Consensus 985 ~~~ 987 (1033)
T PLN03142 985 RLI 987 (1033)
T ss_pred HHH
Confidence 654
No 43
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=95.02 E-value=0.0046 Score=54.92 Aligned_cols=50 Identities=20% Similarity=0.529 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC------ccccccccccccccccccccccccccC
Q 045434 12 LKKGPWTSDEDQKLVKYIQKHGHGS------WRALPKLAGLNRCGKSCRLRWTNYLRP 63 (316)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~G~~~------W~~IA~~lgp~Rt~~qCr~Rw~~~L~p 63 (316)
.++..||.|||.+|.+.|..|+... ...++..++ |+...|..||+.+++.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vrk 58 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVRK 58 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHHH
Confidence 4678999999999999999996422 566667774 9999999999777653
No 44
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.35 E-value=0.038 Score=42.07 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----ccccccccccccccccc
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGH----------------GSWRALPKLA----GLNRCGKSCRLRWTNYL 61 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~----------------~~W~~IA~~l----gp~Rt~~qCr~Rw~~~L 61 (316)
++..||.+|.+.|+++|.+|.. .-|..|+..+ +..|+..+|+.+|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999821 1299999744 23799999999998754
No 45
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=92.87 E-value=0.48 Score=43.28 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCC---CCCHHHHHHHHHHHhHH---------------------HhhhCCCCCC
Q 045434 69 KFSQEEEQTILNLHSILGNKWSAIAGHLP---GRTDNEIKNFWNTHLKK---------------------KLIQMGFDPM 124 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~W~~IA~~lp---gRT~~qcr~Rw~~~L~~---------------------~l~~~~~t~e 124 (316)
+|++++|-.|+.+|.. |+.-..|+..++ .-|-..+..||+.+|-- .-.+..|+.+
T Consensus 1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~~ 79 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSKE 79 (199)
T ss_pred CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCHH
Confidence 5999999999999864 566677766553 45889999999987642 1224558888
Q ss_pred CCCccchhhhc-CChhhhHHHH-----HHhccCCChHHHHHHHHHHHHHHHHHh
Q 045434 125 THRPRTDVFSS-LPHLIALANL-----KELMENHTWEEQAVRLQAEMTKLQYLQ 172 (316)
Q Consensus 125 ed~~l~~l~~~-lg~~~~w~~I-----a~~l~~rt~n~~k~r~q~~~~k~~~lq 172 (316)
|++.|...... .+.+..+.+| +-+-+.||.......|+ .|++..+++
T Consensus 80 EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~-lmkqy~LL~ 132 (199)
T PF13325_consen 80 EEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWR-LMKQYHLLP 132 (199)
T ss_pred HHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHH-HHHHhchhh
Confidence 88777654332 2333333333 22345699999999998 565555553
No 46
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=91.65 E-value=0.42 Score=37.34 Aligned_cols=45 Identities=31% Similarity=0.514 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHh---C----C------chhhhhccCC-----CCCHHHHHHHHHHHhH
Q 045434 69 KFSQEEEQTILNLHSIL---G----N------KWSAIAGHLP-----GRTDNEIKNFWNTHLK 113 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~---G----~------~W~~IA~~lp-----gRT~~qcr~Rw~~~L~ 113 (316)
.||+++++.|++++.+. | + .|..|+..|. ..+..||++||..+.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999998654 2 1 1999998872 3588999999976544
No 47
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=91.58 E-value=0.3 Score=40.98 Aligned_cols=52 Identities=27% Similarity=0.422 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----chhhhhccC------------CCCCHHHHHHHHHHHhHHH
Q 045434 64 DIKRGKFSQEEEQTILNLHSILGN----KWSAIAGHL------------PGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lv~~~G~----~W~~IA~~l------------pgRT~~qcr~Rw~~~L~~~ 115 (316)
..++..||.+||.-|+-++.+||- .|..|...+ ..||+..+..|...+++-.
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 456779999999999999999995 598886532 4699999999998887644
No 48
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.24 E-value=0.32 Score=47.32 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CchhhhhccC----CCCCHHHHHHHHHHHhHHH
Q 045434 67 RGKFSQEEEQTILNLHSILG----------NKWSAIAGHL----PGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G----------~~W~~IA~~l----pgRT~~qcr~Rw~~~L~~~ 115 (316)
...|+.+|-..|+++..+.. .-|..||+.| .-||+.|||.||.++.++.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 36899999999999986531 2299999966 2599999999999876544
No 49
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=91.00 E-value=0.24 Score=49.20 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=63.3
Q ss_pred CccccccccccccccccccccccccccCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCchh
Q 045434 36 SWRALPKLAGLNRCGKSCRLRWTNYLRPD-------------------------IKRGKFSQEEEQTILNLHSILGNKWS 90 (316)
Q Consensus 36 ~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~-------------------------lkkg~WT~EED~~Ll~lv~~~G~~W~ 90 (316)
.|.-+.=.. +-|...-...+|.+..++. +....||.+|-+.|.++++.|.-+|.
T Consensus 75 ~W~w~pFtn-~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~ 153 (445)
T KOG2656|consen 75 PWKWVPFTN-SARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF 153 (445)
T ss_pred CceeeccCC-ccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence 476665333 4677777778887763321 22346999999999999999999999
Q ss_pred hhhcc-----CC-CCCHHHHHHHHHHHhHHHhhhC
Q 045434 91 AIAGH-----LP-GRTDNEIKNFWNTHLKKKLIQM 119 (316)
Q Consensus 91 ~IA~~-----lp-gRT~~qcr~Rw~~~L~~~l~~~ 119 (316)
.||.. ++ .||-..+|+||+...+.-++-.
T Consensus 154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred EEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 99987 55 4999999999998887766644
No 50
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=90.23 E-value=0.41 Score=47.55 Aligned_cols=43 Identities=26% Similarity=0.432 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 045434 69 KFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTH 111 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~ 111 (316)
+||.+|-++..++...+|..+..|+..+|.|..+|++.+|.+-
T Consensus 367 ~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~E 409 (507)
T COG5118 367 RWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKE 409 (507)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999753
No 51
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=81.27 E-value=0.66 Score=46.12 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 045434 12 LKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTN 59 (316)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~ 59 (316)
..--+||.+|-+++.++....|+ ++.-|+.++ |+|..+|++.+|.+
T Consensus 363 ~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lf-P~R~RkqIKaKfi~ 408 (507)
T COG5118 363 KGALRWSKKEIEKFYKALSIWGT-DFSLISSLF-PNRERKQIKAKFIK 408 (507)
T ss_pred CCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhc-CchhHHHHHHHHHH
Confidence 34457999999999999999996 999999999 89999999999875
No 52
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=80.64 E-value=1 Score=37.84 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=29.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 045434 10 SGLKKGPWTSDEDQKLVKYIQKHGH---GSWRALPKLA 44 (316)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~k~G~---~~W~~IA~~l 44 (316)
++-++..||.+||.-|+-++.+||. +.|..|...+
T Consensus 45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I 82 (118)
T PF09111_consen 45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI 82 (118)
T ss_dssp STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 3667899999999999999999998 8899998765
No 53
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=79.57 E-value=3.9 Score=43.00 Aligned_cols=65 Identities=9% Similarity=0.378 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhc----------cCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchh
Q 045434 67 RGKFSQEEEQTILNLHSILGNKWSAIAG----------HLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDV 132 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~----------~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l 132 (316)
|..||-.|++-...+++++|..+..|-+ ...-+|..|+|.+|+..+++..+-. |.++--....++
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~-F~~~l~~dAkel 162 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL-FGPDLSLDAKEL 162 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh-cccccCcchhhH
Confidence 6689999999999999999999988822 2234688899999999888776655 776544443333
No 54
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=78.76 E-value=3.3 Score=44.49 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 045434 67 RGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTH 111 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~ 111 (316)
...||+.|-.+.-+++-.|...+..|++.++++|-+||-+.|+..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999988644
No 55
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=77.49 E-value=4.7 Score=41.11 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 045434 66 KRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHL 112 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L 112 (316)
....||.||-.++-++...||.+..+|-+.||.|+-..+...|+...
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~K 232 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWK 232 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999887543
No 56
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=75.64 E-value=0.93 Score=44.11 Aligned_cols=47 Identities=19% Similarity=0.437 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHh----CC-----CCcccccc---ccccccccccccccccccc
Q 045434 15 GPWTSDEDQKLVKYIQKH----GH-----GSWRALPK---LAGLNRCGKSCRLRWTNYL 61 (316)
Q Consensus 15 g~WT~EED~~L~~~V~k~----G~-----~~W~~IA~---~lgp~Rt~~qCr~Rw~~~L 61 (316)
..|+.+|-..|+++..+. .. .-|..||+ ..|..|++.||+.||.++.
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 689999999999887543 11 24999997 3466899999999998743
No 57
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=74.69 E-value=3 Score=32.82 Aligned_cols=29 Identities=31% Similarity=0.586 Sum_probs=16.9
Q ss_pred CCCCCCCCCHHHHHHH--------HHHHHHhCCCCccccc
Q 045434 10 SGLKKGPWTSDEDQKL--------VKYIQKHGHGSWRALP 41 (316)
Q Consensus 10 ~~lkkg~WT~EED~~L--------~~~V~k~G~~~W~~IA 41 (316)
|.-..|-||+|+|+.| .+++++|| +..|+
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~ 79 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIE 79 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHH
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 3445889999999999 45778888 45554
No 58
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=74.59 E-value=6.6 Score=27.32 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 72 QEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 72 ~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
++++..++.++-..|-.|.+||..+ |.+...++.+....++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 4677788888888888999999999 8999999988766544
No 59
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=74.40 E-value=2.3 Score=45.64 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 045434 14 KGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTN 59 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~ 59 (316)
...||+.|-.++.+++-.|. .++..|++++ ++++.+||-+-|..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~-~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMV-KSKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHHh-ccccHHHHHHHHHH
Confidence 46799999999999999999 5999999999 69999999877654
No 60
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=72.79 E-value=6.7 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCc-hhhhhccCCCCCHHHHHHHHHHH
Q 045434 73 EEEQTILNLHSILGNK-WSAIAGHLPGRTDNEIKNFWNTH 111 (316)
Q Consensus 73 EED~~Ll~lv~~~G~~-W~~IA~~lpgRT~~qcr~Rw~~~ 111 (316)
+=|.+|+.+.+.-|.. |..||+.+ |=+...|..|+..+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 4588999999988854 99999999 89999999998653
No 61
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=69.59 E-value=38 Score=33.28 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=59.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-c---hhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCC----CCccchhhhcCCh
Q 045434 67 RGKFSQEEEQTILNLHSILGN-K---WSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMT----HRPRTDVFSSLPH 138 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~-~---W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~ee----d~~l~~l~~~lg~ 138 (316)
-..||.-|...|+.+.+...+ . -..|++.++||+..++++.-..+ +.++.+..+..+- ...+...-..--.
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~L-K~rvareaiqkv~~~g~~~~R~~e~q~paP 99 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQL-KGRVAREAIQKVHPGGLKGPRRREAQPPAP 99 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHH-HHHHHHHHHHHhcccccccccccccCCCcc
Confidence 457999999999999987643 2 56889999999999999865543 3332222111110 1111111111123
Q ss_pred hhhHHHHHHhccCCChHHHHHHH
Q 045434 139 LIALANLKELMENHTWEEQAVRL 161 (316)
Q Consensus 139 ~~~w~~Ia~~l~~rt~n~~k~r~ 161 (316)
..-|..+|..+-|.-...+-.-|
T Consensus 100 IEvW~dla~k~tg~~ee~~t~af 122 (344)
T PF11035_consen 100 IEVWMDLAEKVTGPLEEALTAAF 122 (344)
T ss_pred HHHHHHHHHHhcCchHHHHHHHH
Confidence 47899999999888777665554
No 62
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=65.19 E-value=8.9 Score=32.88 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhHHHhhh
Q 045434 72 QEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQ 118 (316)
Q Consensus 72 ~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~ 118 (316)
.+-|.+|+.+.++-| ..|.+||+.+ |-+...|+.|+..+....+.+
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 357999999998888 4599999999 999999999998888777654
No 63
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=64.73 E-value=16 Score=41.21 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHH-------------HhH--------------------H
Q 045434 69 KFSQEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNT-------------HLK--------------------K 114 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~-------------~L~--------------------~ 114 (316)
.|+.-|=...+.+..+|| ..-..||..|.|+|...|+..... +++ .
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~ 905 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK 905 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888889999 559999999999999999853211 111 1
Q ss_pred H-----------------hhhCCCCCCCCCccchhhhcCChhhhHHHHHHhc------------cCCChHHHHHHHHHHH
Q 045434 115 K-----------------LIQMGFDPMTHRPRTDVFSSLPHLIALANLKELM------------ENHTWEEQAVRLQAEM 165 (316)
Q Consensus 115 ~-----------------l~~~~~t~eed~~l~~l~~~lg~~~~w~~Ia~~l------------~~rt~n~~k~r~q~~~ 165 (316)
+ .++..++.+||+-|+-.+..+| +..|..|...+ ..||..++..|..+++
T Consensus 906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g-~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~ 984 (1033)
T PLN03142 906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLG-YGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI 984 (1033)
T ss_pred HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhc-cchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence 1 1123488899998887777777 45698886653 4699999999988866
Q ss_pred HHH
Q 045434 166 TKL 168 (316)
Q Consensus 166 ~k~ 168 (316)
.-.
T Consensus 985 ~~~ 987 (1033)
T PLN03142 985 RLI 987 (1033)
T ss_pred HHH
Confidence 543
No 64
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=62.25 E-value=7.9 Score=30.39 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=10.3
Q ss_pred CCCCCCCCCHHHHHHHH
Q 045434 63 PDIKRGKFSQEEEQTIL 79 (316)
Q Consensus 63 p~lkkg~WT~EED~~Ll 79 (316)
|....|-||+|+|+.|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 55678999999999994
No 65
>smart00595 MADF subfamily of SANT domain.
Probab=60.55 E-value=9.6 Score=29.23 Aligned_cols=25 Identities=32% Similarity=0.617 Sum_probs=21.2
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHhHH
Q 045434 89 WSAIAGHLPGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 89 W~~IA~~lpgRT~~qcr~Rw~~~L~~ 114 (316)
|..||..| |-+...|+.+|+++...
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~LR~~ 54 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNLRDR 54 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 99999999 45999999999876543
No 66
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=60.30 E-value=9.4 Score=33.18 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhHHHhhh
Q 045434 72 QEEEQTILNLHSILGN-KWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQ 118 (316)
Q Consensus 72 ~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~ 118 (316)
.+-|.+|+.+.++-|. .|.+||+.+ |-+...|+.|++.+.+..+.+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~GvI~ 59 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGFIQ 59 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 5668999998888884 599999999 999999999998887776654
No 67
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=59.87 E-value=19 Score=27.98 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCC--------chhhhhccCCC---CC--HHHHHHHHHHHhHH
Q 045434 76 QTILNLHSILGN--------KWSAIAGHLPG---RT--DNEIKNFWNTHLKK 114 (316)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lpg---RT--~~qcr~Rw~~~L~~ 114 (316)
-+|-.+|.+.|| .|..||+.|+- -+ +.++|..|..+|.+
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 39 YKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 357788888874 49999999832 12 36889999988865
No 68
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=59.14 E-value=2.1 Score=29.23 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 045434 20 DEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTN 59 (316)
Q Consensus 20 EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~ 59 (316)
+=|.+|+.+.+..+...|.+||+.+| =+...|..|+.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg--lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG--LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC--cCHHHHHHHHHH
Confidence 45889999999999889999999997 777788887654
No 69
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=56.91 E-value=9.9 Score=43.25 Aligned_cols=75 Identities=25% Similarity=0.305 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccc--ccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHh-CCch
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGHGSWRALPK--LAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSIL-GNKW 89 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~~~W~~IA~--~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~-G~~W 89 (316)
.---|..+||..|+-.|-+||.++|.+|-. .+| =+.+ ..+...+-.+.|=..+-..|+.++... +.+|
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~--l~dK-------i~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~ 1202 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLG--LTDK-------IFLVETVPQAKHLQRRADYLLSLLRKHDKGNT 1202 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCcccc--chhh-------hcccccCCchHHHHHHHHHHHHHHhhcccCCC
Confidence 445699999999999999999999999963 222 1111 111222456677888888888888887 6778
Q ss_pred hhhhccC
Q 045434 90 SAIAGHL 96 (316)
Q Consensus 90 ~~IA~~l 96 (316)
....+..
T Consensus 1203 ~~~~~~~ 1209 (1373)
T KOG0384|consen 1203 PKKLKRE 1209 (1373)
T ss_pred chhhhcc
Confidence 7766544
No 70
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=54.31 E-value=25 Score=27.59 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCC--------chhhhhccCCC-----CCHHHHHHHHHHHhHHH
Q 045434 76 QTILNLHSILGN--------KWSAIAGHLPG-----RTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lpg-----RT~~qcr~Rw~~~L~~~ 115 (316)
-+|..+|.+.|| .|..|+..|.- ....+++..|..+|.+-
T Consensus 35 ~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~y 87 (93)
T smart00501 35 YRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPF 87 (93)
T ss_pred HHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHH
Confidence 357778888774 49999999842 24678899999888764
No 71
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=53.66 E-value=3.9 Score=35.12 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCC
Q 045434 19 SDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 65 (316)
Q Consensus 19 ~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~l 65 (316)
.+-|.+|+.+.++.|...|.+||+.+| -+...|+.|+.+....++
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~Gv 52 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQFG--VSPGTIHVRVEKMKQAGI 52 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 357999999999999889999999997 899999999988766543
No 72
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=53.23 E-value=6.8 Score=30.39 Aligned_cols=44 Identities=23% Similarity=0.582 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------Ccccccccc----ccccccccccccccc
Q 045434 16 PWTSDEDQKLVKYIQKH---GHG---------SWRALPKLA----GLNRCGKSCRLRWTN 59 (316)
Q Consensus 16 ~WT~EED~~L~~~V~k~---G~~---------~W~~IA~~l----gp~Rt~~qCr~Rw~~ 59 (316)
+||+++++.|++++... |.. .|..|++.+ |...+..||+.||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999987554 211 288888655 334455677777654
No 73
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=51.17 E-value=10 Score=40.02 Aligned_cols=49 Identities=14% Similarity=0.317 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccc---------ccccccccccccccccc
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAG---------LNRCGKSCRLRWTNYLR 62 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lg---------p~Rt~~qCr~Rw~~~L~ 62 (316)
+|..||..|.+-+..+++.+| .++.+|-+.+- --++..|.|.+|++.+.
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~ 144 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVR 144 (782)
T ss_pred cccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH
Confidence 366899999999999999999 59988832110 13556778888877554
No 74
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=50.66 E-value=29 Score=34.81 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhh-hccCCCCCHHHHHHHHHH
Q 045434 68 GKFSQEEEQTILNLHSILGNKWSAI-AGHLPGRTDNEIKNFWNT 110 (316)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~~W~~I-A~~lpgRT~~qcr~Rw~~ 110 (316)
..|+.+|-...-+.++.||..+..| +.+++.|+...|-..|+.
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYL 321 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHH
Confidence 3799999999999999999999999 567899999999998753
No 75
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=49.94 E-value=32 Score=23.55 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhHH
Q 045434 73 EEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 73 EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~ 114 (316)
+++..++.+.-..|-.+.+||..| |-+...|+.+-...+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 445555555544456699999999 88888888887766643
No 76
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=48.24 E-value=4.2 Score=35.39 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCC
Q 045434 19 SDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 65 (316)
Q Consensus 19 ~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~l 65 (316)
.+-|.+|+.+.++.|.-.|.+||+.+| -+...|+.|+.+..+.++
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg--lS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG--LSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 567999999999999889999999997 888889999988766554
No 77
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=46.41 E-value=23 Score=37.36 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 045434 66 KRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNT 110 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~ 110 (316)
..++|+.+|-++-......+|...+.|+..+++|..+|+|.++..
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhh
Confidence 456899999999999999999999999999999999999998854
No 78
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=45.40 E-value=47 Score=29.06 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCC----CCCHHHHHHHHHHHh
Q 045434 66 KRGKFSQEEEQTILNLHSILGNKWSAIAGHLP----GRTDNEIKNFWNTHL 112 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lp----gRT~~qcr~Rw~~~L 112 (316)
....-|..|.+-|..||.+||.++...+.-.. -.|..||+.+...+.
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 34568899999999999999999999987542 489999999887654
No 79
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=43.58 E-value=9.2 Score=38.38 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=42.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccc-----cccccccccccccccccc
Q 045434 11 GLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKL-----AGLNRCGKSCRLRWTNYL 61 (316)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~-----lgp~Rt~~qCr~Rw~~~L 61 (316)
.++...||+||-+-|.+++++|. -.|-.||.. ++..||-...++||..+.
T Consensus 127 ~l~dn~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 127 HLNDNSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred hhccccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 45567899999999999999999 489999976 654599999999998654
No 80
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=39.53 E-value=25 Score=26.02 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=21.0
Q ss_pred hhhhhccCC-CCCHHHHHHHHHHHhHH
Q 045434 89 WSAIAGHLP-GRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 89 W~~IA~~lp-gRT~~qcr~Rw~~~L~~ 114 (316)
|..||..|+ .-+...|+.||.++...
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~Lr~~ 55 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKNLRDR 55 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 999999995 35788999999876543
No 81
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=38.33 E-value=58 Score=25.61 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhHHHhhh
Q 045434 73 EEEQTILNLHSILGN-KWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQ 118 (316)
Q Consensus 73 EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~ 118 (316)
+.|.+|+.++...|. .+..||+.+ |-+...|+.|...+.+..+.+
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 568899999988874 599999999 999999999998887766554
No 82
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=36.45 E-value=65 Score=26.41 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=23.0
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 85 LGNKWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 85 ~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
.|-.+.+||+.+ |.+...++.+....++
T Consensus 128 ~~~~~~eIA~~l-gis~~tv~~~~~ra~~ 155 (161)
T TIGR02985 128 EGKSYKEIAEEL-GISVKTVEYHISKALK 155 (161)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 456799999999 8899999999876543
No 83
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=34.59 E-value=16 Score=37.53 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTN 59 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~ 59 (316)
.+..||.||--++.++...|| .++.+|-+.| |.|+-..+..-|..
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~L-P~rsLaSlvqyYy~ 230 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFG-KDFHKIRQAL-PHRSLASLVQYYYS 230 (534)
T ss_pred CcccchHHHHHHHHHHHHHhc-ccHHHHHHHc-cCccHHHHHHHHHH
Confidence 467899999999999999999 5999999999 89999888766654
No 84
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=33.84 E-value=43 Score=29.47 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHH
Q 045434 69 KFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWN 109 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~ 109 (316)
.||+|+.++|.+|- .-|-.=.+||+.|++.|.+.|.-+-+
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~h 41 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAH 41 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhh
Confidence 59999999999887 44677899999997788877765543
No 85
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=32.47 E-value=68 Score=26.76 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhHHHhhh
Q 045434 72 QEEEQTILNLHSILGN-KWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQ 118 (316)
Q Consensus 72 ~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~ 118 (316)
.+-|.+|+++.++-+. .+..||+.+ |-+...|+.|-..+.+..+.+
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~GiI~ 53 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGVIK 53 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCcee
Confidence 3568889999888885 499999999 899999999998877776554
No 86
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=32.19 E-value=72 Score=21.32 Aligned_cols=34 Identities=24% Similarity=0.110 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHH
Q 045434 73 EEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNF 107 (316)
Q Consensus 73 EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~R 107 (316)
-|.+.|.+++..++++-...|+.| |=+...++.|
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L-gisr~tL~~k 38 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL-GISRRTLYRK 38 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH-TS-HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHH
Confidence 477889999999999999999998 5455444443
No 87
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=32.01 E-value=57 Score=25.61 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHH
Q 045434 75 EQTILNLHSILGNKWSAIAGHLPGRTDNEI 104 (316)
Q Consensus 75 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~qc 104 (316)
|+.|..+....|..|..+|.+| |=+..++
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 5678889999999999999999 5555443
No 88
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=29.79 E-value=33 Score=36.22 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 045434 8 DESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTN 59 (316)
Q Consensus 8 ~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~ 59 (316)
.......++|+.+|-++...+....|. +...|+..+ ++|..+|++.++..
T Consensus 403 ~sk~~~~~~w~~se~e~fyka~~~~gs-~~slis~l~-p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 403 YSKKLETDKWDASETELFYKALSERGS-DFSLISNLF-PLRDRKQIKAKFKK 452 (584)
T ss_pred ccCccccCcccchhhHHhhhHHhhhcc-ccccccccc-ccccHHHHHHHHhh
Confidence 345677899999999999999999995 999999999 79999999988754
No 89
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=29.73 E-value=1.1e+02 Score=25.82 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=25.0
Q ss_pred CCchhhhhccCCCCCHHHHHHHHHH---HhHHHhhhCCCC
Q 045434 86 GNKWSAIAGHLPGRTDNEIKNFWNT---HLKKKLIQMGFD 122 (316)
Q Consensus 86 G~~W~~IA~~lpgRT~~qcr~Rw~~---~L~~~l~~~~~t 122 (316)
|-.-.+||..| |.+...|+.|... .|+..+...++|
T Consensus 134 g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~~l~~~~~~ 172 (173)
T PRK09645 134 GWSTAQIAADL-GIPEGTVKSRLHYALRALRLALQERGVT 172 (173)
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHHhhccccC
Confidence 45689999999 8888888888664 444555544443
No 90
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.72 E-value=79 Score=26.01 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L 61 (316)
++.+||.|+-..++..+...| ..=..||+.+|. ..+-..+|.+.+
T Consensus 9 ~rr~ys~EfK~~aV~~~~~~g-~sv~evA~e~gI---s~~tl~~W~r~y 53 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFEPG-MTVSLVARQHGV---AASQLFLWRKQY 53 (121)
T ss_pred CCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 458899999888887777777 366788888874 233345565543
No 91
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=27.70 E-value=1.6e+02 Score=24.41 Aligned_cols=47 Identities=15% Similarity=0.361 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHh------------CC-----------------c--hhhhhccCCCCCHHHHHHHHHHHhHHH
Q 045434 69 KFSQEEEQTILNLHSIL------------GN-----------------K--WSAIAGHLPGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~------------G~-----------------~--W~~IA~~lpgRT~~qcr~Rw~~~L~~~ 115 (316)
+||.+||..|-..|.++ |. . ....+...|..|..+=|+||+..+...
T Consensus 1 kfTA~dDY~Lc~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fF~~~~~~~p~HT~~sWRDR~RKfv~~~ 78 (105)
T PF09197_consen 1 KFTADDDYALCKAIKKQFYRDIYQKDPDTGSSLISDGDSKEFIPKRDMRSFFKDLARKNPRHTENSWRDRYRKFVSEY 78 (105)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSB-TTSS-B----------------TTHHHHHHHHTTTS-HHHHHHHHHHTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhCcccccccccCCCccccccchhhHHHHHHHHHcCCccchhHHHHHHHHHHHHc
Confidence 48999999999998654 10 1 455667778899999999998776553
No 92
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=27.14 E-value=1.1e+02 Score=30.12 Aligned_cols=86 Identities=16% Similarity=0.263 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCC---ccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHH-h----
Q 045434 14 KGPWTSDEDQKLVKYIQKHGHGS---WRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSI-L---- 85 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~~~---W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~-~---- 85 (316)
...||.-|...|+.+.+...... -.+|++.+ ++|+..++++-- +.|+ +..+.++|++ |
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l-~~Rs~aEI~~fl-~~LK------------~rvareaiqkv~~~g~ 86 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKEL-PGRSEAEIRDFL-QQLK------------GRVAREAIQKVHPGGL 86 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhc-cCcCHHHHHHHH-HHHH------------HHHHHHHHHHhccccc
Confidence 46799999999999988764333 45677778 689998887632 2232 3445556655 2
Q ss_pred -CC------------chhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 86 -GN------------KWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 86 -G~------------~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
|. -|..+|+.+.|.-...+-.-|-+.|.
T Consensus 87 ~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ 127 (344)
T PF11035_consen 87 KGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLT 127 (344)
T ss_pred ccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 11 19999999988887777776766553
No 93
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=26.93 E-value=1.1e+02 Score=24.58 Aligned_cols=47 Identities=26% Similarity=0.276 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHh----CC----chhhh----hccCC-CCCHHHHHHHHHHHhHH
Q 045434 68 GKFSQEEEQTILNLHSIL----GN----KWSAI----AGHLP-GRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 68 g~WT~EED~~Ll~lv~~~----G~----~W~~I----A~~lp-gRT~~qcr~Rw~~~L~~ 114 (316)
.-||+|++..||+.+..| |. .|..+ ...+. .=+..|+.++-..+.++
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 469999999999999887 42 24443 33332 23667777766554444
No 94
>PLN03162 golden-2 like transcription factor; Provisional
Probab=26.60 E-value=4.4e+02 Score=26.74 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc---hhhhhccC--CCCCHHHHHHHHHHHh
Q 045434 67 RGKFSQEEEQTILNLHSILGNK---WSAIAGHL--PGRTDNEIKNFWNTHL 112 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~---W~~IA~~l--pgRT~~qcr~Rw~~~L 112 (316)
|-.||+|-.++.+++|.+.|.. =+.|-+.| +|=|...++.+.+.|.
T Consensus 237 RLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYR 287 (526)
T PLN03162 237 KVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYR 287 (526)
T ss_pred cccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 4579999999999999999932 56676666 5888888888766554
No 95
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=26.44 E-value=1.1e+02 Score=24.31 Aligned_cols=30 Identities=27% Similarity=0.281 Sum_probs=23.0
Q ss_pred HhCCchhhhhccCCCCCHHHHHHHHHHHhHH
Q 045434 84 ILGNKWSAIAGHLPGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 84 ~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~ 114 (316)
..|..+..||+.+ |-+...++.+....+++
T Consensus 124 ~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 124 LEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred hcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467799999999 66888888887765543
No 96
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=25.00 E-value=3.5e+02 Score=27.43 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC
Q 045434 65 IKRGKFSQEEEQTILNLHSILG 86 (316)
Q Consensus 65 lkkg~WT~EED~~Ll~lv~~~G 86 (316)
.-.|.|+++=|+-..++...|.
T Consensus 74 daegvWSpdIEqsFqEALaiyp 95 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYP 95 (455)
T ss_pred ccccccChhHHHHHHHHHhhcC
Confidence 4568999999999999999986
No 97
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=24.64 E-value=1.6e+02 Score=18.89 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 045434 75 EQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNT 110 (316)
Q Consensus 75 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~ 110 (316)
+..++.++-..|..+..||..+ |-+...++.+...
T Consensus 15 ~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~ 49 (55)
T cd06171 15 EREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHR 49 (55)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHH
Confidence 4455555545667799999998 6677777655543
No 98
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=24.57 E-value=41 Score=29.65 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccc-ccccc
Q 045434 16 PWTSDEDQKLVKYIQKHGHGSWRALPKLAG-LNRCG 50 (316)
Q Consensus 16 ~WT~EED~~L~~~V~k~G~~~W~~IA~~lg-p~Rt~ 50 (316)
.||.|+.++|.++-.+ | ..=.+||+.|| ..|+.
T Consensus 2 ~Wtde~~~~L~~lw~~-G-~SasqIA~~lg~vsRnA 35 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-G-LSASQIARQLGGVSRNA 35 (162)
T ss_pred CCCHHHHHHHHHHHHc-C-CCHHHHHHHhCCcchhh
Confidence 5999999999999854 4 26889999998 44444
No 99
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=23.71 E-value=1.1e+02 Score=24.01 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCchhhhhccCCCCCHHHH
Q 045434 75 EQTILNLHSILGNKWSAIAGHLPGRTDNEI 104 (316)
Q Consensus 75 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~qc 104 (316)
|..|..+....|..|..+|..| |=+...+
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI 32 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEI 32 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHH
Confidence 6778888899999999999999 5444433
No 100
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=22.78 E-value=1.8e+02 Score=25.41 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 045434 76 QTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHL 112 (316)
Q Consensus 76 ~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L 112 (316)
..++.+....|-.+.+||..| |-+...++.+|....
T Consensus 141 ~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR 176 (185)
T PF07638_consen 141 RRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRAR 176 (185)
T ss_pred HHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 333444334466799999999 999999999997654
No 101
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=22.46 E-value=29 Score=27.36 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 045434 20 DEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64 (316)
Q Consensus 20 EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~ 64 (316)
+.|.+++.++...+...+.+||+.+| -+...|+.|..+..+.+
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l~--~s~~tv~~~l~~L~~~g 45 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKVG--LSPSTVHNRVKRLEEEG 45 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 57889999999998789999999996 77778887777655443
No 102
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.40 E-value=1.5e+02 Score=25.42 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=13.9
Q ss_pred CchhhhhccCCCCCHHHHHH
Q 045434 87 NKWSAIAGHLPGRTDNEIKN 106 (316)
Q Consensus 87 ~~W~~IA~~lpgRT~~qcr~ 106 (316)
..|..||..| +-+..+|+.
T Consensus 100 ~TW~~IA~~l-~i~erta~r 118 (130)
T PF05263_consen 100 RTWYQIAQKL-HISERTARR 118 (130)
T ss_pred chHHHHHHHh-CccHHHHHH
Confidence 4599999988 556666653
No 103
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=22.21 E-value=53 Score=37.76 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHhC-Cchhhhh
Q 045434 69 KFSQEEEQTILNLHSILG-NKWSAIA 93 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~~W~~IA 93 (316)
.|..+||.+||-.|-+|| ++|..|-
T Consensus 1135 ~W~~e~Ds~LLiGI~khGygswe~Ir 1160 (1373)
T KOG0384|consen 1135 DWGSEDDSMLLIGIFKHGYGSWEAIR 1160 (1373)
T ss_pred CCCchhhhhHhhhhhhcccccHHHhc
Confidence 699999999999999999 8899984
No 104
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=21.54 E-value=1.5e+02 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=20.8
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHHh
Q 045434 85 LGNKWSAIAGHLPGRTDNEIKNFWNTHL 112 (316)
Q Consensus 85 ~G~~W~~IA~~lpgRT~~qcr~Rw~~~L 112 (316)
.|-....||..| |-+...|+.+....+
T Consensus 140 ~~~~~~eIA~~l-gis~~tv~~~~~ra~ 166 (179)
T PRK11924 140 EGLSYREIAEIL-GVPVGTVKSRLRRAR 166 (179)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 355699999999 788888888776533
No 105
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=21.51 E-value=67 Score=24.31 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCCchhhhhc
Q 045434 76 QTILNLHSILGNKWSAIAG 94 (316)
Q Consensus 76 ~~Ll~lv~~~G~~W~~IA~ 94 (316)
..|.+|.+.||++|..|-.
T Consensus 30 ~vl~~LL~lY~~nW~lIEe 48 (65)
T PF10440_consen 30 PVLKNLLKLYDGNWELIEE 48 (65)
T ss_pred HHHHHHHHHHcCCchhhhc
Confidence 3577888999999999964
No 106
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=21.19 E-value=27 Score=29.28 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCC
Q 045434 19 SDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 65 (316)
Q Consensus 19 ~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~l 65 (316)
.+-|.+++++.++.+...+.+||+.+| -+...|+.|-.+..+.++
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~lg--lS~~~v~~Ri~~L~~~Gi 51 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERVG--LSPSTVLRRIKRLEEEGV 51 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCc
Confidence 356889999999999889999999997 888888888776655443
No 107
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=20.23 E-value=1.7e+02 Score=24.52 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=20.5
Q ss_pred hCCchhhhhccCCCCCHHHHHHHHHHHh
Q 045434 85 LGNKWSAIAGHLPGRTDNEIKNFWNTHL 112 (316)
Q Consensus 85 ~G~~W~~IA~~lpgRT~~qcr~Rw~~~L 112 (316)
.|-.+..||..| |.+...++.+....+
T Consensus 143 ~~~s~~eIA~~l-gis~~tV~~~l~ra~ 169 (182)
T PRK09652 143 EGLSYEEIAEIM-GCPIGTVRSRIFRAR 169 (182)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 356799999999 788888877765433
No 108
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=20.16 E-value=2.4e+02 Score=24.48 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhcc
Q 045434 16 PWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWSAIAGH 95 (316)
Q Consensus 16 ~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~ 95 (316)
.+|.++.+.|..+.+.+|..-|..+-=.+ ++...--...+ ..|-.+.+..|..+++++|+++-.+...
T Consensus 95 ~~t~~d~~~l~~l~~~fg~~~~~~~ivv~--T~~d~l~~~~~----------~~~~~~~~~~l~~l~~~c~~r~~~f~~~ 162 (196)
T cd01852 95 RFTEEEEQAVETLQELFGEKVLDHTIVLF--TRGDDLEGGTL----------EDYLENSCEALKRLLEKCGGRYVAFNNK 162 (196)
T ss_pred CcCHHHHHHHHHHHHHhChHhHhcEEEEE--ECccccCCCcH----------HHHHHhccHHHHHHHHHhCCeEEEEeCC
Confidence 37877766666666667754454332222 22221100111 1222334578999999999887655544
Q ss_pred C
Q 045434 96 L 96 (316)
Q Consensus 96 l 96 (316)
.
T Consensus 163 ~ 163 (196)
T cd01852 163 A 163 (196)
T ss_pred C
Confidence 4
Done!