Query 045434
Match_columns 316
No_of_seqs 328 out of 1690
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 23:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 6.1E-43 2.1E-47 302.9 2.5 154 11-167 3-157 (159)
2 3zqc_A MYB3; transcription-DNA 100.0 6.2E-34 2.1E-38 239.5 9.8 129 14-149 2-130 (131)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 1.8E-34 6.2E-39 241.5 2.8 125 40-167 1-126 (128)
4 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.6E-33 8.9E-38 226.7 8.8 105 11-116 1-105 (105)
5 2k9n_A MYB24; R2R3 domain, DNA 100.0 6.7E-33 2.3E-37 225.6 7.4 104 14-118 1-104 (107)
6 1h8a_C AMV V-MYB, MYB transfor 100.0 8E-33 2.7E-37 231.5 7.8 113 3-116 16-128 (128)
7 3osg_A MYB21; transcription-DN 100.0 3.3E-32 1.1E-36 227.6 8.9 106 8-115 5-110 (126)
8 1h89_C C-MYB, MYB proto-oncoge 100.0 2.3E-30 7.9E-35 223.9 6.4 110 6-116 50-159 (159)
9 1gv2_A C-MYB, MYB proto-oncoge 99.9 4.6E-27 1.6E-31 189.9 4.3 103 64-168 1-104 (105)
10 3osg_A MYB21; transcription-DN 99.9 1.4E-26 4.9E-31 193.4 6.8 105 62-168 6-110 (126)
11 2k9n_A MYB24; R2R3 domain, DNA 99.9 1.1E-26 3.6E-31 188.9 5.6 101 67-169 1-102 (107)
12 3zqc_A MYB3; transcription-DNA 99.9 6.8E-26 2.3E-30 190.4 4.5 100 67-168 2-102 (131)
13 2dim_A Cell division cycle 5-l 99.8 7E-22 2.4E-26 149.0 1.0 67 8-75 3-69 (70)
14 2dim_A Cell division cycle 5-l 99.8 3.3E-20 1.1E-24 139.8 5.9 65 62-126 4-69 (70)
15 2din_A Cell division cycle 5-l 99.7 1.2E-17 4.1E-22 124.3 6.4 60 60-120 2-61 (66)
16 1ign_A Protein (RAP1); RAP1,ye 99.7 7.5E-18 2.6E-22 153.6 6.2 106 9-115 3-200 (246)
17 2cu7_A KIAA1915 protein; nucle 99.7 3.2E-17 1.1E-21 124.2 7.2 66 61-127 3-68 (72)
18 1ign_A Protein (RAP1); RAP1,ye 99.7 1.1E-17 3.9E-22 152.4 5.6 106 63-168 4-200 (246)
19 2llk_A Cyclin-D-binding MYB-li 99.7 1.1E-17 3.9E-22 127.4 4.7 58 53-111 9-66 (73)
20 2d9a_A B-MYB, MYB-related prot 99.7 2.6E-17 9.1E-22 120.2 4.9 56 62-117 3-59 (60)
21 2juh_A Telomere binding protei 99.7 1.6E-17 5.4E-22 137.9 2.6 83 9-91 12-103 (121)
22 1guu_A C-MYB, MYB proto-oncoge 99.7 9.5E-17 3.3E-21 113.9 6.0 50 65-114 1-51 (52)
23 1ity_A TRF1; helix-turn-helix, 99.7 1.3E-16 4.5E-21 119.8 7.0 62 61-122 4-68 (69)
24 2d9a_A B-MYB, MYB-related prot 99.7 2.2E-17 7.4E-22 120.6 2.6 57 9-66 3-59 (60)
25 1gvd_A MYB proto-oncogene prot 99.7 1.1E-16 3.9E-21 113.6 5.8 50 65-114 1-51 (52)
26 1gvd_A MYB proto-oncogene prot 99.6 4E-17 1.4E-21 115.9 2.2 52 12-64 1-52 (52)
27 2roh_A RTBP1, telomere binding 99.6 5.9E-17 2E-21 134.7 3.4 80 9-88 26-114 (122)
28 1guu_A C-MYB, MYB proto-oncoge 99.6 5.9E-17 2E-21 115.0 1.2 52 12-64 1-52 (52)
29 1ity_A TRF1; helix-turn-helix, 99.6 1.7E-16 5.7E-21 119.2 2.3 63 8-71 4-68 (69)
30 1w0t_A Telomeric repeat bindin 99.6 9.2E-16 3.1E-20 109.4 6.0 49 66-114 1-52 (53)
31 3sjm_A Telomeric repeat-bindin 99.6 9.2E-16 3.2E-20 113.9 6.0 52 65-116 9-63 (64)
32 1x41_A Transcriptional adaptor 99.6 7.4E-16 2.5E-20 112.8 5.4 53 62-114 3-56 (60)
33 2yum_A ZZZ3 protein, zinc fing 99.6 1.3E-15 4.4E-20 116.0 5.4 61 62-122 3-69 (75)
34 3sjm_A Telomeric repeat-bindin 99.6 3.9E-16 1.3E-20 115.9 1.0 56 11-66 8-64 (64)
35 2elk_A SPCC24B10.08C protein; 99.6 4.7E-15 1.6E-19 107.9 6.0 50 63-112 5-56 (58)
36 1x41_A Transcriptional adaptor 99.5 1.2E-15 4E-20 111.7 1.9 54 10-64 4-57 (60)
37 2din_A Cell division cycle 5-l 99.5 6.7E-16 2.3E-20 114.9 -0.8 59 7-68 2-60 (66)
38 1w0t_A Telomeric repeat bindin 99.5 2E-15 6.8E-20 107.7 0.9 49 13-62 1-51 (53)
39 2juh_A Telomere binding protei 99.5 3E-15 1E-19 124.2 1.7 82 61-144 11-103 (121)
40 2yum_A ZZZ3 protein, zinc fing 99.5 3.2E-15 1.1E-19 113.8 0.6 60 9-69 3-67 (75)
41 2elk_A SPCC24B10.08C protein; 99.5 9.1E-15 3.1E-19 106.3 1.7 52 10-61 5-56 (58)
42 2cu7_A KIAA1915 protein; nucle 99.5 6.9E-15 2.4E-19 111.3 0.8 59 7-67 2-60 (72)
43 2ltp_A Nuclear receptor corepr 99.2 6E-15 2E-19 116.3 0.0 56 60-115 9-64 (89)
44 2roh_A RTBP1, telomere binding 99.4 1.7E-14 5.8E-19 119.8 2.4 75 63-137 27-112 (122)
45 2llk_A Cyclin-D-binding MYB-li 99.4 4.5E-14 1.5E-18 107.5 2.0 62 2-67 11-72 (73)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.4 3.7E-13 1.3E-17 102.4 5.8 51 63-113 14-68 (73)
47 2ckx_A NGTRF1, telomere bindin 99.4 1.7E-13 5.9E-18 106.7 3.6 69 15-84 1-79 (83)
48 2yus_A SWI/SNF-related matrix- 99.4 3.1E-13 1.1E-17 104.3 4.3 48 64-111 15-62 (79)
49 2aje_A Telomere repeat-binding 99.4 2.4E-13 8.1E-18 110.3 3.2 79 8-86 7-94 (105)
50 2yus_A SWI/SNF-related matrix- 99.3 6.4E-13 2.2E-17 102.5 2.5 52 7-60 11-62 (79)
51 2aje_A Telomere repeat-binding 99.3 4E-12 1.4E-16 103.1 7.2 52 63-114 9-65 (105)
52 2ckx_A NGTRF1, telomere bindin 99.3 3.4E-12 1.2E-16 99.4 5.3 48 68-115 1-53 (83)
53 2ltp_A Nuclear receptor corepr 98.9 5.5E-13 1.9E-17 105.0 0.0 55 7-63 9-63 (89)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2E-12 6.9E-17 98.4 0.6 55 7-62 11-68 (73)
55 1x58_A Hypothetical protein 49 99.2 4.8E-11 1.6E-15 87.7 6.6 50 65-114 6-58 (62)
56 2cjj_A Radialis; plant develop 99.2 3.4E-11 1.2E-15 95.6 6.1 50 66-115 7-60 (93)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 1.3E-09 4.6E-14 79.7 5.7 47 66-112 11-57 (61)
58 3hm5_A DNA methyltransferase 1 98.9 1.6E-09 5.6E-14 85.8 6.0 66 51-120 18-88 (93)
59 2cjj_A Radialis; plant develop 98.9 2.2E-10 7.6E-15 90.9 -0.1 48 13-61 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 6.3E-09 2.2E-13 78.8 5.2 51 64-115 5-59 (72)
61 1x58_A Hypothetical protein 49 98.7 1.7E-09 5.9E-14 79.4 1.1 49 12-62 6-57 (62)
62 2eqr_A N-COR1, N-COR, nuclear 98.6 7.7E-09 2.6E-13 75.6 2.0 52 7-60 5-56 (61)
63 2iw5_B Protein corest, REST co 98.6 3.1E-08 1E-12 89.7 5.9 49 66-114 132-180 (235)
64 1fex_A TRF2-interacting telome 98.6 3.9E-08 1.3E-12 71.6 5.1 47 67-113 2-58 (59)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.5 1.1E-08 3.8E-13 77.4 0.1 51 10-62 4-57 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.5 1.2E-07 4.1E-12 71.9 4.7 47 67-113 8-58 (73)
67 2xag_B REST corepressor 1; ami 98.5 8.2E-08 2.8E-12 95.7 4.7 46 68-113 381-426 (482)
68 1fex_A TRF2-interacting telome 98.2 1.5E-07 5E-12 68.6 0.3 48 14-62 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.2 1.8E-07 6.1E-12 70.9 0.7 48 14-62 8-58 (73)
70 2iw5_B Protein corest, REST co 98.2 2.4E-07 8.3E-12 83.9 0.9 50 11-62 130-179 (235)
71 2yqk_A Arginine-glutamic acid 98.0 1.7E-05 5.8E-10 58.2 6.5 49 62-110 4-53 (63)
72 1ofc_X ISWI protein; nuclear p 98.0 9.1E-06 3.1E-10 76.9 6.2 100 15-115 111-276 (304)
73 1ug2_A 2610100B20RIK gene prod 97.9 1.5E-05 5.2E-10 62.4 6.4 47 69-115 35-84 (95)
74 4eef_G F-HB80.4, designed hema 97.9 2.3E-06 8E-11 64.6 0.7 43 67-109 20-66 (74)
75 4eef_G F-HB80.4, designed hema 97.8 3.8E-06 1.3E-10 63.5 0.6 44 14-58 20-66 (74)
76 3hm5_A DNA methyltransferase 1 97.8 8.3E-06 2.8E-10 64.5 2.0 63 104-172 20-87 (93)
77 2lr8_A CAsp8-associated protei 96.9 3.8E-06 1.3E-10 62.5 0.0 44 69-113 16-62 (70)
78 4iej_A DNA methyltransferase 1 97.6 0.00013 4.5E-09 57.5 7.1 60 56-119 23-87 (93)
79 2yqk_A Arginine-glutamic acid 97.6 2.5E-05 8.4E-10 57.3 2.3 50 8-59 3-53 (63)
80 4a69_C Nuclear receptor corepr 97.5 0.00018 6E-09 56.8 5.8 44 67-110 43-86 (94)
81 2crg_A Metastasis associated p 97.4 0.00027 9.4E-09 52.7 6.1 43 67-109 8-51 (70)
82 2xag_B REST corepressor 1; ami 97.3 5.1E-05 1.7E-09 75.7 1.7 48 12-61 378-425 (482)
83 2ebi_A DNA binding protein GT- 97.3 0.00022 7.4E-09 54.9 4.4 50 66-115 3-66 (86)
84 2y9y_A Imitation switch protei 96.9 0.0022 7.5E-08 62.1 8.0 103 15-117 124-294 (374)
85 4b4c_A Chromodomain-helicase-D 96.8 0.0033 1.1E-07 55.5 7.7 45 69-113 136-195 (211)
86 2crg_A Metastasis associated p 96.7 0.00037 1.3E-08 52.0 1.2 45 13-59 7-52 (70)
87 4a69_C Nuclear receptor corepr 96.7 0.00034 1.2E-08 55.2 1.0 44 14-59 43-86 (94)
88 1ofc_X ISWI protein; nuclear p 96.7 0.0025 8.4E-08 60.2 6.9 100 67-167 110-275 (304)
89 2ebi_A DNA binding protein GT- 96.6 0.00016 5.5E-09 55.6 -1.9 49 13-61 3-63 (86)
90 2lr8_A CAsp8-associated protei 95.5 0.00043 1.5E-08 51.4 0.0 47 120-167 16-63 (70)
91 1ug2_A 2610100B20RIK gene prod 96.4 0.00095 3.2E-08 52.3 1.6 49 120-168 35-84 (95)
92 4iej_A DNA methyltransferase 1 94.4 0.016 5.5E-07 45.6 2.1 54 118-173 30-88 (93)
93 1irz_A ARR10-B; helix-turn-hel 94.2 0.1 3.5E-06 38.3 5.8 49 65-113 5-58 (64)
94 4b4c_A Chromodomain-helicase-D 93.7 0.052 1.8E-06 47.7 4.3 37 6-42 126-162 (211)
95 2xb0_X Chromo domain-containin 90.7 0.11 3.8E-06 48.1 2.6 28 15-42 169-196 (270)
96 2xb0_X Chromo domain-containin 89.1 0.27 9.1E-06 45.6 3.7 26 69-94 170-196 (270)
97 2y9y_A Imitation switch protei 86.9 1.2 4.3E-05 42.9 7.0 99 68-167 124-291 (374)
98 1irz_A ARR10-B; helix-turn-hel 86.4 0.24 8.2E-06 36.2 1.3 48 11-59 4-55 (64)
99 2li6_A SWI/SNF chromatin-remod 60.1 5.9 0.0002 31.6 3.0 39 77-115 53-99 (116)
100 2lm1_A Lysine-specific demethy 59.2 14 0.00047 28.7 5.0 40 76-115 47-98 (107)
101 2jrz_A Histone demethylase jar 57.7 12 0.00042 29.8 4.5 40 76-115 43-94 (117)
102 3cz6_A DNA-binding protein RAP 54.4 10 0.00034 32.6 3.6 29 10-41 110-146 (168)
103 2cxy_A BAF250B subunit, HBAF25 54.4 16 0.00054 29.4 4.7 40 77-116 55-106 (125)
104 2rq5_A Protein jumonji; develo 53.0 3.7 0.00013 33.4 0.7 45 36-83 65-113 (121)
105 1kkx_A Transcription regulator 52.6 8.7 0.0003 31.1 2.9 41 77-117 52-100 (123)
106 2eqy_A RBP2 like, jumonji, at 52.5 17 0.00059 29.1 4.7 39 77-115 46-96 (122)
107 1c20_A DEAD ringer protein; DN 50.2 20 0.0007 28.8 4.8 40 76-115 55-107 (128)
108 1u78_A TC3 transposase, transp 45.6 65 0.0022 24.8 7.1 85 16-105 6-97 (141)
109 2rq5_A Protein jumonji; develo 43.1 24 0.00081 28.5 4.1 80 11-116 4-98 (121)
110 2kk0_A AT-rich interactive dom 42.9 25 0.00087 29.0 4.3 40 76-115 67-119 (145)
111 2jxj_A Histone demethylase jar 42.3 12 0.00042 28.4 2.1 39 77-115 40-90 (96)
112 2li6_A SWI/SNF chromatin-remod 40.6 4.5 0.00015 32.3 -0.7 39 24-63 53-98 (116)
113 2o8x_A Probable RNA polymerase 37.6 40 0.0014 22.8 4.1 40 73-113 18-57 (70)
114 2jvw_A Uncharacterized protein 36.3 7.4 0.00025 29.9 -0.0 45 22-79 18-69 (88)
115 1ig6_A MRF-2, modulator recogn 35.9 14 0.00047 28.8 1.5 40 76-115 36-88 (107)
116 1ku3_A Sigma factor SIGA; heli 35.0 36 0.0012 23.8 3.6 42 71-114 12-57 (73)
117 3i4p_A Transcriptional regulat 33.9 27 0.00091 28.7 3.1 45 73-118 3-48 (162)
118 3hug_A RNA polymerase sigma fa 29.3 75 0.0026 23.1 4.7 46 74-120 41-89 (92)
119 2k27_A Paired box protein PAX- 28.0 1.3E+02 0.0045 24.0 6.4 79 14-96 23-111 (159)
120 2p7v_B Sigma-70, RNA polymeras 27.3 43 0.0015 23.0 2.8 28 86-114 25-52 (68)
121 3e7l_A Transcriptional regulat 25.2 79 0.0027 21.7 3.9 25 73-97 19-43 (63)
122 2e1c_A Putative HTH-type trans 24.0 69 0.0024 26.6 4.0 46 72-118 26-72 (171)
123 2dbb_A Putative HTH-type trans 23.8 1.1E+02 0.0037 24.2 5.0 45 73-118 9-54 (151)
124 1ntc_A Protein (nitrogen regul 23.6 32 0.0011 25.6 1.6 29 20-49 51-79 (91)
125 3i4p_A Transcriptional regulat 22.9 12 0.00041 30.8 -1.1 42 20-63 3-44 (162)
126 1ntc_A Protein (nitrogen regul 22.7 1.2E+02 0.0039 22.5 4.6 34 72-106 50-83 (91)
127 2p1m_A SKP1-like protein 1A; F 21.9 27 0.00091 29.0 0.9 35 38-80 119-153 (160)
128 3cz6_A DNA-binding protein RAP 21.7 50 0.0017 28.2 2.5 17 63-79 110-126 (168)
129 1x3u_A Transcriptional regulat 21.4 1.4E+02 0.0049 20.5 4.8 41 70-113 17-57 (79)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=6.1e-43 Score=302.91 Aligned_cols=154 Identities=27% Similarity=0.550 Sum_probs=110.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 045434 11 GLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGN-KW 89 (316)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~-~W 89 (316)
++++++||+|||++|+++|.+||..+|..||+.+ ++|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 3679999999999999999999988999999999 599999999999999999999999999999999999999996 69
Q ss_pred hhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhhhHHHHHHhccCCChHHHHHHHHHHHHH
Q 045434 90 SAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLIALANLKELMENHTWEEQAVRLQAEMTK 167 (316)
Q Consensus 90 ~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~w~~Ia~~l~~rt~n~~k~r~q~~~~k 167 (316)
..||..|+|||++||++||.++|++.+++++||++||..|+.++..+| .+|+.||.+|+|||++++++||+.+++|
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g--~~W~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG--NRWAEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC--SCHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC--CCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999 8999999999999999999999987655
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=6.2e-34 Score=239.47 Aligned_cols=129 Identities=34% Similarity=0.611 Sum_probs=108.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 045434 14 KGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWSAIA 93 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA 93 (316)
||+||+|||++|+++|.+||.++|..||+.| ++|++.||++||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 7999999999999999999988999999999 599999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhhhHHHHHHhc
Q 045434 94 GHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLIALANLKELM 149 (316)
Q Consensus 94 ~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~w~~Ia~~l 149 (316)
+.|+|||+.||++||+++|++.+..+.++.+.-.+ .. ....+|+.|++.|
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p----~~--~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP----DR--SKKRKAADVPKKL 130 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC----CC--C------------
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc----hh--hhhhhhhhcchhc
Confidence 99999999999999999999999988877554322 11 2226788887765
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.8e-34 Score=241.52 Aligned_cols=125 Identities=23% Similarity=0.479 Sum_probs=100.7
Q ss_pred cccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhHHHhhh
Q 045434 40 LPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGN-KWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQ 118 (316)
Q Consensus 40 IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~ 118 (316)
||+.| ++|++.||+.||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|+|||++||++||.++|++.+++
T Consensus 1 Ia~~~-~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVI-KNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred Ccccc-CCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 78888 699999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCCCCCCCCccchhhhcCChhhhHHHHHHhccCCChHHHHHHHHHHHHH
Q 045434 119 MGFDPMTHRPRTDVFSSLPHLIALANLKELMENHTWEEQAVRLQAEMTK 167 (316)
Q Consensus 119 ~~~t~eed~~l~~l~~~lg~~~~w~~Ia~~l~~rt~n~~k~r~q~~~~k 167 (316)
++||++||..|+.++..+| .+|+.||.+|+|||++++++||+.+++|
T Consensus 80 ~~WT~eEd~~L~~~~~~~G--~~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLG--NRWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHC--SCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred ccCCHHHHHHHHHHHHHHC--cCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999 7999999999999999999999987765
No 4
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2.6e-33 Score=226.66 Aligned_cols=105 Identities=47% Similarity=0.933 Sum_probs=99.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 045434 11 GLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWS 90 (316)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~ 90 (316)
++++|+||+|||++|+++|.+||..+|..||+.| ++|++.||++||.++|+|.+++++||+|||++|+++|.+||.+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 4789999999999999999999988999999999 599999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHHhHHHh
Q 045434 91 AIAGHLPGRTDNEIKNFWNTHLKKKL 116 (316)
Q Consensus 91 ~IA~~lpgRT~~qcr~Rw~~~L~~~l 116 (316)
.||+.|||||+.||++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998753
No 5
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=6.7e-33 Score=225.55 Aligned_cols=104 Identities=30% Similarity=0.607 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 045434 14 KGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWSAIA 93 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA 93 (316)
||+||+|||++|+++|.+||..+|..||+.| ++|++.||++||.++|+|.+++|+||+|||++|+++|.+||.+|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHT-TTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhc-CCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 6899999999999999999988999999999 599999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhHHHhhh
Q 045434 94 GHLPGRTDNEIKNFWNTHLKKKLIQ 118 (316)
Q Consensus 94 ~~lpgRT~~qcr~Rw~~~L~~~l~~ 118 (316)
+.|||||+.||++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 6
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=8e-33 Score=231.55 Aligned_cols=113 Identities=42% Similarity=0.847 Sum_probs=102.5
Q ss_pred CCCccCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHH
Q 045434 3 RSPCCDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLH 82 (316)
Q Consensus 3 R~~~~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv 82 (316)
||-...+|++++|+||+|||++|+++|.+||..+|..||+.| ++|++.||++||.++|+|.+++++||+|||++|+++|
T Consensus 16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 94 (128)
T 1h8a_C 16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 94 (128)
T ss_dssp ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 566667899999999999999999999999988899999999 5999999999999999999999999999999999999
Q ss_pred HHhCCchhhhhccCCCCCHHHHHHHHHHHhHHHh
Q 045434 83 SILGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKL 116 (316)
Q Consensus 83 ~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l 116 (316)
.+||.+|..||+.|||||+.+|++||+.++++++
T Consensus 95 ~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 95 KRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999987653
No 7
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=3.3e-32 Score=227.62 Aligned_cols=106 Identities=35% Similarity=0.653 Sum_probs=100.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 045434 8 DESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGN 87 (316)
Q Consensus 8 ~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~ 87 (316)
...+.++|+||+|||++|+++|.+||. +|..||+.+ ++|++.||++||.++|+|.+++++||+|||++|+++|.+||.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF-PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC-TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 457899999999999999999999996 999999999 599999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCHHHHHHHHHHHhHHH
Q 045434 88 KWSAIAGHLPGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 88 ~W~~IA~~lpgRT~~qcr~Rw~~~L~~~ 115 (316)
+|..||+.|+|||+.+||+||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999888764
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.3e-30 Score=223.92 Aligned_cols=110 Identities=45% Similarity=0.874 Sum_probs=103.8
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 045434 6 CCDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSIL 85 (316)
Q Consensus 6 ~~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~ 85 (316)
...+|++++|+||+|||++|+++|.+||..+|..||+.| ++|++.||+.||.++|+|.+++++||+|||++|+++|.+|
T Consensus 50 ~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 128 (159)
T 1h89_C 50 KVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 128 (159)
T ss_dssp TTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred HccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH
Confidence 456789999999999999999999999987899999999 6999999999999999999999999999999999999999
Q ss_pred CCchhhhhccCCCCCHHHHHHHHHHHhHHHh
Q 045434 86 GNKWSAIAGHLPGRTDNEIKNFWNTHLKKKL 116 (316)
Q Consensus 86 G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l 116 (316)
|.+|..||+.|||||+.+|++||+.++++++
T Consensus 129 g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 129 GNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999887653
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.93 E-value=4.6e-27 Score=189.95 Aligned_cols=103 Identities=22% Similarity=0.425 Sum_probs=97.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhhhH
Q 045434 64 DIKRGKFSQEEEQTILNLHSILGN-KWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLIAL 142 (316)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~w 142 (316)
++++|+||+|||++|+++|.+||. +|..||..|+|||++||++||.++|+|.+++++||++||..|+.++..+| .+|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G--~~W 78 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG--NRW 78 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS--SCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC--CCH
Confidence 468999999999999999999996 69999999999999999999999999999999999999999999999999 799
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHH
Q 045434 143 ANLKELMENHTWEEQAVRLQAEMTKL 168 (316)
Q Consensus 143 ~~Ia~~l~~rt~n~~k~r~q~~~~k~ 168 (316)
+.||.+|+|||++++++||+.+++++
T Consensus 79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 79 AEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999887664
No 10
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.93 E-value=1.4e-26 Score=193.42 Aligned_cols=105 Identities=17% Similarity=0.249 Sum_probs=100.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhhh
Q 045434 62 RPDIKRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLIA 141 (316)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~ 141 (316)
.+..++|+||+|||++|+++|.+||.+|..||..|+|||++||++||.++|++.+++++||++||..|+.++..+| .+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G--~~ 83 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG--RQ 83 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC--SC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC--cC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHH
Q 045434 142 LANLKELMENHTWEEQAVRLQAEMTKL 168 (316)
Q Consensus 142 w~~Ia~~l~~rt~n~~k~r~q~~~~k~ 168 (316)
|+.||..|+|||++++++||..+++|.
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999888774
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.93 E-value=1.1e-26 Score=188.91 Aligned_cols=101 Identities=15% Similarity=0.240 Sum_probs=97.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhhhHHHH
Q 045434 67 RGKFSQEEEQTILNLHSILGN-KWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLIALANL 145 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~w~~I 145 (316)
||+||+|||++|+++|.+||. +|..||..|+|||++||++||.++|+|.+++++||++||..|+.++..+| .+|+.|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G--~~W~~I 78 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYG--PKWNKI 78 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTC--SCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhC--cCHHHH
Confidence 689999999999999999995 79999999999999999999999999999999999999999999999999 799999
Q ss_pred HHhccCCChHHHHHHHHHHHHHHH
Q 045434 146 KELMENHTWEEQAVRLQAEMTKLQ 169 (316)
Q Consensus 146 a~~l~~rt~n~~k~r~q~~~~k~~ 169 (316)
|.+|+|||++++++||+.++++..
T Consensus 79 a~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 79 SKFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHhhHH
Confidence 999999999999999999888754
No 12
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.91 E-value=6.8e-26 Score=190.35 Aligned_cols=100 Identities=19% Similarity=0.377 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhhhHHHH
Q 045434 67 RGKFSQEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLIALANL 145 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~w~~I 145 (316)
+|+||+|||++|+++|.+|| ++|..||..|+|||+.||++||.++|++.++++.||++||..|+.++..+| .+|+.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G--~~W~~I 79 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG--SKWSVI 79 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC--SCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC--cCHHHH
Confidence 79999999999999999999 679999999999999999999999999999999999999999999999999 899999
Q ss_pred HHhccCCChHHHHHHHHHHHHHH
Q 045434 146 KELMENHTWEEQAVRLQAEMTKL 168 (316)
Q Consensus 146 a~~l~~rt~n~~k~r~q~~~~k~ 168 (316)
|.+|+|||++++++||+.++++.
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGG
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999877654
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7e-22 Score=149.01 Aligned_cols=67 Identities=30% Similarity=0.618 Sum_probs=64.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHH
Q 045434 8 DESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEE 75 (316)
Q Consensus 8 ~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED 75 (316)
..+.+++|+||+|||++|+++|.+||..+|..||+.| ++|++.||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL-HRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS-TTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh-cCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4688999999999999999999999988999999999 499999999999999999999999999997
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-20 Score=139.77 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=62.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCC
Q 045434 62 RPDIKRGKFSQEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTH 126 (316)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed 126 (316)
.+.+++++||+|||++|+++|.+|| ++|..||..|+|||++|||+||+++|+|.+++++||++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7899999999999999999999999999999999999998
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=124.32 Aligned_cols=60 Identities=25% Similarity=0.394 Sum_probs=57.7
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhHHHhhhCC
Q 045434 60 YLRPDIKRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMG 120 (316)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~ 120 (316)
+|+|.+++++||+|||++|+++|++||.+|..||+ ++|||++|||+||+++|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 69999999999999999999999999999999999 8899999999999999999998764
No 16
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.70 E-value=7.5e-18 Score=153.59 Aligned_cols=106 Identities=21% Similarity=0.345 Sum_probs=91.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----ccccccccccccccccccccccccccCCCC-----------------
Q 045434 9 ESGLKKGPWTSDEDQKLVKYIQKHGHGS-----WRALPKLAGLNRCGKSCRLRWTNYLRPDIK----------------- 66 (316)
Q Consensus 9 ~~~lkkg~WT~EED~~L~~~V~k~G~~~-----W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lk----------------- 66 (316)
.+.+++++||+|||++|+++|++||..+ |.+||+.| +|||+.|||.||.++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L-pGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-PNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-TTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc-CCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3567899999999999999999998532 99999999 799999999999999999886
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 045434 67 ------------RGKFSQEEEQTILNLHSI-L------------------------------------------------ 85 (316)
Q Consensus 67 ------------kg~WT~EED~~Ll~lv~~-~------------------------------------------------ 85 (316)
+.+||.|||-.|...+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999999987 2
Q ss_pred -----C----CchhhhhccCCCCCHHHHHHHHHHHhHHH
Q 045434 86 -----G----NKWSAIAGHLPGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 86 -----G----~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~ 115 (316)
| ..|..||+.+|+||..+.|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 1 15999999999999999999999887654
No 17
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.69 E-value=3.2e-17 Score=124.17 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=61.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCC
Q 045434 61 LRPDIKRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHR 127 (316)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t~eed~ 127 (316)
.+|.+++++||+|||++|+++|.+||.+|..||+.|+|||+.|||+||++++++.++. ++++++..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s 68 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN 68 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence 5789999999999999999999999999999999999999999999999999999887 77776653
No 18
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.69 E-value=1.1e-17 Score=152.39 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=87.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHHhHHHhh-------------------
Q 045434 63 PDIKRGKFSQEEEQTILNLHSILGNK------WSAIAGHLPGRTDNEIKNFWNTHLKKKLI------------------- 117 (316)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lv~~~G~~------W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~------------------- 117 (316)
+.+++++||+|||++|+++|+++|++ |..||+.|+|||++|||+||+++|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 35788999999999999999999875 99999999999999999999999999996
Q ss_pred ----------hCCCCCCCCCccchhhhc---------------------------------CCh----------------
Q 045434 118 ----------QMGFDPMTHRPRTDVFSS---------------------------------LPH---------------- 138 (316)
Q Consensus 118 ----------~~~~t~eed~~l~~l~~~---------------------------------lg~---------------- 138 (316)
+..|+.+||..|+..+.. ++.
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 677887777776654433 010
Q ss_pred -------hhhHHHHHHhccCCChHHHHHHHHHHHHHH
Q 045434 139 -------LIALANLKELMENHTWEEQAVRLQAEMTKL 168 (316)
Q Consensus 139 -------~~~w~~Ia~~l~~rt~n~~k~r~q~~~~k~ 168 (316)
...|..||+.+|+||++.+++||...+++.
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 028999999999999999999999866654
No 19
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=127.41 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=46.6
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 045434 53 CRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTH 111 (316)
Q Consensus 53 Cr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~ 111 (316)
..-||.++|+|++++++||+|||++|+++|++||++|..||+.| |||++|||+||+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 99999999999853
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.6e-17 Score=120.18 Aligned_cols=56 Identities=25% Similarity=0.462 Sum_probs=52.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhHHHhh
Q 045434 62 RPDIKRGKFSQEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLKKKLI 117 (316)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~ 117 (316)
+|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4788999999999999999999999 6899999999999999999999999998764
No 21
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.66 E-value=1.6e-17 Score=137.92 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=77.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccccccccccccccc-----CCCCCC-CCCHHHHHHHH
Q 045434 9 ESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYLR-----PDIKRG-KFSQEEEQTIL 79 (316)
Q Consensus 9 ~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lg---p~Rt~~qCr~Rw~~~L~-----p~lkkg-~WT~EED~~Ll 79 (316)
.+..++++||.|||+.|+++|++||.++|..|++.++ ++||+.+|++||+++++ |.++++ +|++||+.+|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 4678999999999999999999999889999998742 58999999999999998 999999 99999999999
Q ss_pred HHHHHhCCchhh
Q 045434 80 NLHSILGNKWSA 91 (316)
Q Consensus 80 ~lv~~~G~~W~~ 91 (316)
.++..+|++|..
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999976
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.66 E-value=9.5e-17 Score=113.89 Aligned_cols=50 Identities=28% Similarity=0.592 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhHH
Q 045434 65 IKRGKFSQEEEQTILNLHSILGN-KWSAIAGHLPGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 65 lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qcr~Rw~~~L~~ 114 (316)
+++++||+|||++|+++|.+||. +|..||+.|+|||++|||+||+++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 899999999999999999999999986
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.66 E-value=1.3e-16 Score=119.78 Aligned_cols=62 Identities=29% Similarity=0.357 Sum_probs=56.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHHhHHHhhhCCCC
Q 045434 61 LRPDIKRGKFSQEEEQTILNLHSILG-NKWSAIAGHLP--GRTDNEIKNFWNTHLKKKLIQMGFD 122 (316)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~qcr~Rw~~~L~~~l~~~~~t 122 (316)
..+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||.++|++.+.+...+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 45677899999999999999999999 68999999999 9999999999999999999877543
No 24
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=2.2e-17 Score=120.64 Aligned_cols=57 Identities=26% Similarity=0.554 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCC
Q 045434 9 ESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK 66 (316)
Q Consensus 9 ~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lk 66 (316)
.|++++++||+|||++|+++|.+||..+|..||+.| ++|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC-SSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-cCCCHHHHHHHHHHHcCCccC
Confidence 478999999999999999999999988999999999 599999999999999999875
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.65 E-value=1.1e-16 Score=113.55 Aligned_cols=50 Identities=34% Similarity=0.755 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhHH
Q 045434 65 IKRGKFSQEEEQTILNLHSILGN-KWSAIAGHLPGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 65 lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qcr~Rw~~~L~~ 114 (316)
+++++||+|||++|+++|.+||. +|..||..|+|||++|||+||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 699999999999999999999999986
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=4e-17 Score=115.91 Aligned_cols=52 Identities=50% Similarity=0.969 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 045434 12 LKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64 (316)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~ 64 (316)
+++|+||+|||++|+++|.+||..+|..||+.| ++|++.||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 579999999999999999999987899999999 5999999999999999984
No 27
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.64 E-value=5.9e-17 Score=134.65 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=73.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----cCCCCCCCCCHHH-HHHHH
Q 045434 9 ESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYL-----RPDIKRGKFSQEE-EQTIL 79 (316)
Q Consensus 9 ~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lg---p~Rt~~qCr~Rw~~~L-----~p~lkkg~WT~EE-D~~Ll 79 (316)
....++++||.|||+.|+++|++||.++|..|++.+. ++||+.+|++||.+++ +|.++++.|+++| +++|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 3567899999999999999999999999999998631 5899999999999999 7999999999999 89999
Q ss_pred HHHHHhCCc
Q 045434 80 NLHSILGNK 88 (316)
Q Consensus 80 ~lv~~~G~~ 88 (316)
+++..+|+.
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999964
No 28
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=5.9e-17 Score=114.99 Aligned_cols=52 Identities=35% Similarity=0.799 Sum_probs=47.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 045434 12 LKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64 (316)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~ 64 (316)
+++|+||+|||++|+++|.+||.++|..||+.| ++|++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 579999999999999999999987999999999 5999999999999999984
No 29
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=1.7e-16 Score=119.21 Aligned_cols=63 Identities=21% Similarity=0.373 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccc--ccccccccccccccccCCCCCCCCC
Q 045434 8 DESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLRPDIKRGKFS 71 (316)
Q Consensus 8 ~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp--~Rt~~qCr~Rw~~~L~p~lkkg~WT 71 (316)
.++..++++||+|||++|+++|.+||.++|..||+.+ + +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY-KFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS-CCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc-CcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 3577899999999999999999999988999999999 6 8999999999999999999988653
No 30
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=9.2e-16 Score=109.42 Aligned_cols=49 Identities=31% Similarity=0.417 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHHhHH
Q 045434 66 KRGKFSQEEEQTILNLHSILG-NKWSAIAGHLP--GRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~qcr~Rw~~~L~~ 114 (316)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 579999999999999999999 68999999999 99999999999999864
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=9.2e-16 Score=113.94 Aligned_cols=52 Identities=29% Similarity=0.466 Sum_probs=47.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHHhHHHh
Q 045434 65 IKRGKFSQEEEQTILNLHSILG-NKWSAIAGHLP--GRTDNEIKNFWNTHLKKKL 116 (316)
Q Consensus 65 lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~qcr~Rw~~~L~~~l 116 (316)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.|||+||.+++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 5789999999999999999999 58999999865 9999999999999998865
No 32
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=7.4e-16 Score=112.76 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=49.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhHH
Q 045434 62 RPDIKRGKFSQEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~~ 114 (316)
.+.+.+++||+|||++|+++|++|| ++|..||+.|++||++|||+||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3578899999999999999999999 7999999999999999999999998864
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=115.97 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=55.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhhccCCCCCHHHHHHHHHHHhHHHhhhCCCC
Q 045434 62 RPDIKRGKFSQEEEQTILNLHSILG------NKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQMGFD 122 (316)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lv~~~G------~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~~~~t 122 (316)
+|.+.+++||+|||++|+++|.+|| .+|..||..|+|||++|||+||+++|.+.++.+...
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~ 69 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPV 69 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 4788999999999999999999999 679999999999999999999999999988776433
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=3.9e-16 Score=115.94 Aligned_cols=56 Identities=30% Similarity=0.476 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc-cccccccccccccccccCCCC
Q 045434 11 GLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAG-LNRCGKSCRLRWTNYLRPDIK 66 (316)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lg-p~Rt~~qCr~Rw~~~L~p~lk 66 (316)
..+|++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.+++++.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45799999999999999999999889999998752 389999999999999988763
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=4.7e-15 Score=107.86 Aligned_cols=50 Identities=20% Similarity=0.382 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHHh
Q 045434 63 PDIKRGKFSQEEEQTILNLHSILG-NKWSAIAGHLP-GRTDNEIKNFWNTHL 112 (316)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~qcr~Rw~~~L 112 (316)
..+.+++||+|||++|+++|++|| ++|..||+.|+ +||++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999 89999999999 999999999999875
No 36
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.2e-15 Score=111.68 Aligned_cols=54 Identities=17% Similarity=0.495 Sum_probs=50.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 045434 10 SGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64 (316)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~ 64 (316)
+.+++++||+|||++|+++|.+||.++|.+||+.| ++||+.||+.||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQM-CTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH-TTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh-CCCCHHHHHHHHHHHccCC
Confidence 67899999999999999999999988999999999 5999999999999998764
No 37
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.7e-16 Score=114.86 Aligned_cols=59 Identities=22% Similarity=0.450 Sum_probs=53.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCC
Q 045434 7 CDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG 68 (316)
Q Consensus 7 ~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg 68 (316)
+.+|.+++++||+|||++|+++|+.||. +|..||+ + ++||+.||+.||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~-~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I-IGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H-HSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c-cCcCHHHHHHHHHHHhChHhcCC
Confidence 3679999999999999999999999996 9999999 5 47999999999999999877654
No 38
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.51 E-value=2e-15 Score=107.69 Aligned_cols=49 Identities=27% Similarity=0.506 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccc--cccccccccccccccc
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLR 62 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp--~Rt~~qCr~Rw~~~L~ 62 (316)
++|+||+|||++|+++|.+||.++|..||+.+ + +||+.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~-~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY-KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS-CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc-CCCCCCHHHHHHHHHHHHc
Confidence 58999999999999999999988999999999 6 8999999999999875
No 39
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.50 E-value=3e-15 Score=124.25 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=68.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHHhH-----HHhhhC-CCCCCCCCcc
Q 045434 61 LRPDIKRGKFSQEEEQTILNLHSILGN-KWSAIAGH----LPGRTDNEIKNFWNTHLK-----KKLIQM-GFDPMTHRPR 129 (316)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~qcr~Rw~~~L~-----~~l~~~-~~t~eed~~l 129 (316)
+.+..++++||.|||+.|+++|++||. +|..|++. |++||+.+||+||+++++ +.++++ .|+++++..+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 556778999999999999999999995 89999998 489999999999999999 777776 5666666667
Q ss_pred chhhhcCChhhhHHH
Q 045434 130 TDVFSSLPHLIALAN 144 (316)
Q Consensus 130 ~~l~~~lg~~~~w~~ 144 (316)
+.++..+| ++|++
T Consensus 91 ~~~h~~~g--n~~~~ 103 (121)
T 2juh_A 91 LAAHAYWS--QQQGK 103 (121)
T ss_dssp HHHHHHHH--HHHCC
T ss_pred HHHHHHHc--cchhc
Confidence 77777777 55543
No 40
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.2e-15 Score=113.78 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=55.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CCccccccccccccccccccccccccccCCCCCCC
Q 045434 9 ESGLKKGPWTSDEDQKLVKYIQKHGH-----GSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGK 69 (316)
Q Consensus 9 ~~~lkkg~WT~EED~~L~~~V~k~G~-----~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~ 69 (316)
+|++++++||+|||++|+++|.+||. .+|..||+.| ++||..||+.||.++|.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~-~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL-GNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH-SSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhcCC
Confidence 58899999999999999999999996 6899999999 499999999999999998877764
No 41
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=9.1e-15 Score=106.33 Aligned_cols=52 Identities=23% Similarity=0.456 Sum_probs=47.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 045434 10 SGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 (316)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L 61 (316)
..+.+++||+|||++|+++|++||.++|..||+.|+.+||+.||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3466899999999999999999998899999999943899999999998864
No 42
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=6.9e-15 Score=111.28 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=54.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCC
Q 045434 7 CDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 67 (316)
Q Consensus 7 ~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkk 67 (316)
+..|.+++++||+|||++|+++|.+||. +|..||+.| ++||+.||+.||.+++++.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLI-GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999995 999999999 5999999999999999876655
No 43
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.18 E-value=6e-15 Score=116.27 Aligned_cols=56 Identities=27% Similarity=0.284 Sum_probs=52.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhHHH
Q 045434 60 YLRPDIKRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~ 115 (316)
.+.|.+++++||.|||++|+++|.+||.+|..||..|+|||++||++||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999998764
No 44
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.45 E-value=1.7e-14 Score=119.83 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=64.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccC----CCCCHHHHHHHHHHHh-----HHHhhhCCCCCCC-CCccch
Q 045434 63 PDIKRGKFSQEEEQTILNLHSILGN-KWSAIAGHL----PGRTDNEIKNFWNTHL-----KKKLIQMGFDPMT-HRPRTD 131 (316)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~l----pgRT~~qcr~Rw~~~L-----~~~l~~~~~t~ee-d~~l~~ 131 (316)
...++++||.|||+.|+++|++||. +|..|++.+ ++||+.+||+||.+++ .+.++++.|+++| +..++.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 3457899999999999999999995 899999863 8999999999999999 5788888888888 566777
Q ss_pred hhhcCC
Q 045434 132 VFSSLP 137 (316)
Q Consensus 132 l~~~lg 137 (316)
++..+|
T Consensus 107 ~h~~~g 112 (122)
T 2roh_A 107 AQAYWS 112 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776665
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=4.5e-14 Score=107.48 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCCCccCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCC
Q 045434 2 GRSPCCDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 67 (316)
Q Consensus 2 gR~~~~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkk 67 (316)
+|+-...+|++++|+||+|||++|+++|.+||. +|..||+.| |||+.||+.||.. |....+.
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 356677899999999999999999999999995 799999999 6999999999985 4444443
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=3.7e-13 Score=102.40 Aligned_cols=51 Identities=10% Similarity=0.214 Sum_probs=46.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 63 PDIKRGKFSQEEEQTILNLHSILG----NKWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
+...+++||.|||.+|++++..|| .+|..||++|||||++||++||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999 579999999999999999999998764
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.38 E-value=1.7e-13 Score=106.69 Aligned_cols=69 Identities=25% Similarity=0.478 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccccccc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 045434 15 GPWTSDEDQKLVKYIQKHGHGSWRALPKL----AGLNRCGKSCRLRWTNYL-----RPDIKRG-KFSQEEEQTILNLHSI 84 (316)
Q Consensus 15 g~WT~EED~~L~~~V~k~G~~~W~~IA~~----lgp~Rt~~qCr~Rw~~~L-----~p~lkkg-~WT~EED~~Ll~lv~~ 84 (316)
++||+|||+.|+++|++||.++|..|++. + ++||+.+|++||.+++ +|.+++| +..++.+.+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999899999985 6 5999999999999988 5776665 6788888888888754
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=3.1e-13 Score=104.29 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH
Q 045434 64 DIKRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTH 111 (316)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~ 111 (316)
...+++||+|||++|+++|++||++|..||++|++||+.||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999865
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.35 E-value=2.4e-13 Score=110.25 Aligned_cols=79 Identities=25% Similarity=0.412 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----cCCCCCCCCCHHHHHH-H
Q 045434 8 DESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYL-----RPDIKRGKFSQEEEQT-I 78 (316)
Q Consensus 8 ~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lg---p~Rt~~qCr~Rw~~~L-----~p~lkkg~WT~EED~~-L 78 (316)
.....++++||.|||+.|+++|++||.++|..|++.+. ++||..+|++||.+++ +|.+++|.-++.|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 34678999999999999999999999989999998652 5899999999999998 6899999888777554 7
Q ss_pred HHHHHHhC
Q 045434 79 LNLHSILG 86 (316)
Q Consensus 79 l~lv~~~G 86 (316)
+++...+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776655
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=6.4e-13 Score=102.53 Aligned_cols=52 Identities=17% Similarity=0.392 Sum_probs=48.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 045434 7 CDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60 (316)
Q Consensus 7 ~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~ 60 (316)
+......+++||+|||++|+++|.+|| ++|.+||+.|+ +||..||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 356677899999999999999999999 89999999996 99999999999997
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.29 E-value=4e-12 Score=103.06 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccC----CCCCHHHHHHHHHHHhHH
Q 045434 63 PDIKRGKFSQEEEQTILNLHSILGN-KWSAIAGHL----PGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~l----pgRT~~qcr~Rw~~~L~~ 114 (316)
...++++||.|||+.|+++|++||. +|..|++.+ ++||+.+||+||.++++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999995 899999966 899999999999999963
No 52
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.27 E-value=3.4e-12 Score=99.36 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhhhcc----CCCCCHHHHHHHHHHHhHHH
Q 045434 68 GKFSQEEEQTILNLHSILGN-KWSAIAGH----LPGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~qcr~Rw~~~L~~~ 115 (316)
++||+|||+.|+++|++||. +|..|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999995 89999985 89999999999999999644
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.90 E-value=5.5e-13 Score=104.99 Aligned_cols=55 Identities=22% Similarity=0.433 Sum_probs=50.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccC
Q 045434 7 CDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP 63 (316)
Q Consensus 7 ~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p 63 (316)
...+++++|+||+|||++|+++|.+||. +|..||+.| +|||..||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l-~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV-GSKTVSQCKNFYFNYKKR 63 (89)
Confidence 4568899999999999999999999995 899999999 599999999999998864
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.20 E-value=2e-12 Score=98.35 Aligned_cols=55 Identities=15% Similarity=0.390 Sum_probs=49.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccc
Q 045434 7 CDESGLKKGPWTSDEDQKLVKYIQKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR 62 (316)
Q Consensus 7 ~~~~~lkkg~WT~EED~~L~~~V~k~G~---~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~ 62 (316)
-+++...+++||+|||++|+++|.+||. .+|.+||+.| +|||..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v-pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 4567788999999999999999999993 5799999999 59999999999998764
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.17 E-value=4.8e-11 Score=87.65 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchhhhh---ccCCCCCHHHHHHHHHHHhHH
Q 045434 65 IKRGKFSQEEEQTILNLHSILGNKWSAIA---GHLPGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 65 lkkg~WT~EED~~Ll~lv~~~G~~W~~IA---~~lpgRT~~qcr~Rw~~~L~~ 114 (316)
..+.+||+|||+.|++.|++||.+|..|+ ..+++||...+++||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 577899999999999987754
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.16 E-value=3.4e-11 Score=95.61 Aligned_cols=50 Identities=18% Similarity=0.428 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhHHH
Q 045434 66 KRGKFSQEEEQTILNLHSILG----NKWSAIAGHLPGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~ 115 (316)
.+++||.|||++|++++.+|| ++|..||+.|||||+++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 56999999999999999999999987654
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=79.69 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 045434 66 KRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHL 112 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L 112 (316)
..++||+||++++++++.+||.+|..||..|++||..||+.+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997543
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.90 E-value=1.6e-09 Score=85.78 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=59.1
Q ss_pred ccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccC-----CCCCHHHHHHHHHHHhHHHhhhCC
Q 045434 51 KSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWSAIAGHL-----PGRTDNEIKNFWNTHLKKKLIQMG 120 (316)
Q Consensus 51 ~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~l-----pgRT~~qcr~Rw~~~L~~~l~~~~ 120 (316)
.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.+..+...+
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567899999976 89999999999999999999999999998 589999999999998888776654
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.87 E-value=2.2e-10 Score=90.91 Aligned_cols=48 Identities=10% Similarity=0.354 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccccccc
Q 045434 13 KKGPWTSDEDQKLVKYIQKHG---HGSWRALPKLAGLNRCGKSCRLRWTNYL 61 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G---~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L 61 (316)
.++.||.|||++|.+++.+|| ...|..||+.| +|||..+|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v-pGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS-TTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 378999999999999999997 35799999999 5999999999998864
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.77 E-value=6.3e-09 Score=78.76 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhHHH
Q 045434 64 DIKRGKFSQEEEQTILNLHSILG----NKWSAIAGHLPGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~ 115 (316)
..+.+.||.|||++|.+++.+|+ .+|..||..| |||.++|+.||..+....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 34678999999999999999997 4699999998 999999999998876553
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.74 E-value=1.7e-09 Score=79.36 Aligned_cols=49 Identities=12% Similarity=0.276 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccc---ccccccccccccccccccccc
Q 045434 12 LKKGPWTSDEDQKLVKYIQKHGHGSWRALP---KLAGLNRCGKSCRLRWTNYLR 62 (316)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~G~~~W~~IA---~~lgp~Rt~~qCr~Rw~~~L~ 62 (316)
.++++||+|||+.|+++|++||. +|..|+ .++ ++||...+++||+++.+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~-~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQ-KGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCC-TTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCc-cCcccchHHHHHHHHHh
Confidence 47899999999999999999996 999999 466 58999999999998654
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=7.7e-09 Score=75.60 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=45.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 045434 7 CDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60 (316)
Q Consensus 7 ~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~ 60 (316)
.++..-..++||+||++++.+++.+|| .+|..||+.| ++|+..||..+|...
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l-~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYL-ERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHC-TTSCHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHc-CCCCHHHHHHHHHHh
Confidence 345566789999999999999999999 6999999999 599999999999654
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.62 E-value=3.1e-08 Score=89.75 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhHH
Q 045434 66 KRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~ 114 (316)
..++||.||++++++++.+||.+|..||+.+++||..|||++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999987754
No 64
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.61 E-value=3.9e-08 Score=71.59 Aligned_cols=47 Identities=26% Similarity=0.443 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hhhhhc-cCCCCCHHHHHHHHHHHhH
Q 045434 67 RGKFSQEEEQTILNLHSIL--------GNK-WSAIAG-HLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~--------G~~-W~~IA~-~lpgRT~~qcr~Rw~~~L~ 113 (316)
+.+||.|||+.|++.|.+| |+. |..+++ .++++|-.+||+||..+|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 444 999999 8999999999999998774
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.52 E-value=1.1e-08 Score=77.39 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=44.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccc
Q 045434 10 SGLKKGPWTSDEDQKLVKYIQKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR 62 (316)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~k~G~---~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~ 62 (316)
.+.+.+.||.|||++|.+++.+|+. ..|.+||+.+| |+..+|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 4556889999999999999999973 56999999985 999999999987654
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=1.2e-07 Score=71.90 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 67 RGKFSQEEEQTILNLHSILG----NKWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
...||.+|+++|.+++..|+ ++|..||..++|||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46899999999999999998 359999999999999999999987643
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.47 E-value=8.2e-08 Score=95.71 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 68 GKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
.+||.||-+++++++.+||.+|..||+.+++||..|||++|.++.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999975443
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.24 E-value=1.5e-07 Score=68.56 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccccccccccccccc
Q 045434 14 KGPWTSDEDQKLVKYIQKH--------GHGSWRALPK-LAGLNRCGKSCRLRWTNYLR 62 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~--------G~~~W~~IA~-~lgp~Rt~~qCr~Rw~~~L~ 62 (316)
+.+||+|||+.|+++|.+| |..-|+.+++ .+ +++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~-~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-TQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-SSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHC-CCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4335999999 67 89999999999998774
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.24 E-value=1.8e-07 Score=70.94 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccc
Q 045434 14 KGPWTSDEDQKLVKYIQKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR 62 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~---~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~ 62 (316)
...||.+|+++|.+++..|+. ++|..||+.++ +|+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 467999999999999999975 46999999995 9999999999997754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.20 E-value=2.4e-07 Score=83.90 Aligned_cols=50 Identities=26% Similarity=0.435 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 045434 11 GLKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR 62 (316)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~ 62 (316)
....++||.||++++++++.+|| .+|.+||+.++ +||..||+.+|.++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34578999999999999999999 69999999996 9999999999988764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=1.7e-05 Score=58.15 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=44.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHH
Q 045434 62 RPDIKRGKFSQEEEQTILNLHSILGNKWSAIAG-HLPGRTDNEIKNFWNT 110 (316)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~qcr~Rw~~ 110 (316)
.|.++...||+||-++..+++.+||.+|..|++ .+++||..+|...|+.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 356778899999999999999999999999999 5899999999988853
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.95 E-value=9.1e-06 Score=76.88 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc---------------------------
Q 045434 15 GPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRL-------RWTNY--------------------------- 60 (316)
Q Consensus 15 g~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~-------Rw~~~--------------------------- 60 (316)
+.||..|...++.++.+||..+|..||..++ +++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999995 888776641 22110
Q ss_pred ----------------ccCCCCCCCCCHHHHHHHHHHHHHhCC----chhhhhc------------cCCCCCHHHHHHHH
Q 045434 61 ----------------LRPDIKRGKFSQEEEQTILNLHSILGN----KWSAIAG------------HLPGRTDNEIKNFW 108 (316)
Q Consensus 61 ----------------L~p~lkkg~WT~EED~~Ll~lv~~~G~----~W~~IA~------------~lpgRT~~qcr~Rw 108 (316)
.-+..++..||.+||..||-++.+||- .|..|.. .+..||+.++..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 001224568999999999999999994 4999962 34579999999999
Q ss_pred HHHhHHH
Q 045434 109 NTHLKKK 115 (316)
Q Consensus 109 ~~~L~~~ 115 (316)
..+++-.
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888654
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.95 E-value=1.5e-05 Score=62.39 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHHhHHH
Q 045434 69 KFSQEEEQTILNLHSILGN---KWSAIAGHLPGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~qcr~Rw~~~L~~~ 115 (316)
-||.|||..||..+++-|. .|..||+.|.+|+.+|+++||+.+++-.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6999999999999999996 5999999999999999999999887543
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.88 E-value=2.3e-06 Score=64.61 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHH
Q 045434 67 RGKFSQEEEQTILNLHSILGN----KWSAIAGHLPGRTDNEIKNFWN 109 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~qcr~Rw~ 109 (316)
...||.+|+++|.+++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 5999999999999999999874
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.80 E-value=3.8e-06 Score=63.45 Aligned_cols=44 Identities=11% Similarity=0.341 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccc
Q 045434 14 KGPWTSDEDQKLVKYIQKHGH---GSWRALPKLAGLNRCGKSCRLRWT 58 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~---~~W~~IA~~lgp~Rt~~qCr~Rw~ 58 (316)
.+.||.||+++|..++.+|+. ..|.+||+.+ |||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V-pGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV-KGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS-CSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc-CCCCHHHHHHHHH
Confidence 568999999999999999975 3799999999 4999999999996
No 76
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.76 E-value=8.3e-06 Score=64.47 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=56.5
Q ss_pred HHHHHHHHhHHHhhhCCCCCCCCCccchhhhcCChhhhHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHHh
Q 045434 104 IKNFWNTHLKKKLIQMGFDPMTHRPRTDVFSSLPHLIALANLKELM-----ENHTWEEQAVRLQAEMTKLQYLQ 172 (316)
Q Consensus 104 cr~Rw~~~L~~~l~~~~~t~eed~~l~~l~~~lg~~~~w~~Ia~~l-----~~rt~n~~k~r~q~~~~k~~~lq 172 (316)
+.++|.++|.+ .+||.+|+..|++|...++ .+|..|+..+ ++||..++|+|+...+++.....
T Consensus 20 t~eeY~~~L~~----~~WTkEETd~Lf~L~~~fd--lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 20 SEQEYQLYLHD----DAWTKAETDHLFDLSRRFD--LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CHHHHHHHTCB----TTBCHHHHHHHHHHHHHTT--TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCC----CCCCHHHHHHHHHHHHHhC--CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 46788888866 8999999999999999999 9999999999 48999999999999888876654
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.95 E-value=3.8e-06 Score=62.46 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 69 KFSQEEEQTILNLHSILGN---KWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
-||.|||..||..+++-|. .|..||..| +|++.|+.+||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 599999999 9999999999987764
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.63 E-value=0.00013 Score=57.52 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=50.5
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCC-----CCCHHHHHHHHHHHhHHHhhhC
Q 045434 56 RWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWSAIAGHLP-----GRTDNEIKNFWNTHLKKKLIQM 119 (316)
Q Consensus 56 Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lp-----gRT~~qcr~Rw~~~L~~~l~~~ 119 (316)
.|..+|. ...||.||...|++|+++|+-+|..|+.... .||..++|+||..+.++.++..
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3444444 3689999999999999999999999998763 7999999999999888877654
No 79
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=2.5e-05 Score=57.28 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 045434 8 DESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTN 59 (316)
Q Consensus 8 ~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~-~lgp~Rt~~qCr~Rw~~ 59 (316)
..|.+....||+||-++..+++.+|| .+|..|++ .+ ++|+..+|...|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v-~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELL-PNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSC-TTSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHc-CCCcHHHHHHHHhc
Confidence 35788889999999999999999999 59999998 68 59999999887754
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.46 E-value=0.00018 Score=56.84 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 045434 67 RGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNT 110 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~ 110 (316)
...||+||.++..+++..||.+|..|+..|++||..+|-..|+.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998853
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.42 E-value=0.00027 Score=52.75 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHH
Q 045434 67 RGKFSQEEEQTILNLHSILGNKWSAIAG-HLPGRTDNEIKNFWN 109 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~qcr~Rw~ 109 (316)
...||+||-.+..+++.+||.+|..|++ .|++||..+|...|+
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 589999999999886
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.34 E-value=5.1e-05 Score=75.71 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 045434 12 LKKGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 (316)
Q Consensus 12 lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L 61 (316)
....+||.||-+++++++.+|| .+|..||+.+| +|+..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4578999999999999999999 59999999997 999999999987643
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.29 E-value=0.00022 Score=54.89 Aligned_cols=50 Identities=16% Similarity=0.421 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-------C---chhhhhccCC----CCCHHHHHHHHHHHhHHH
Q 045434 66 KRGKFSQEEEQTILNLHSILG-------N---KWSAIAGHLP----GRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 66 kkg~WT~EED~~Ll~lv~~~G-------~---~W~~IA~~lp----gRT~~qcr~Rw~~~L~~~ 115 (316)
+...||.+|-..|+++..... . .|..||..|. .||+.||+++|.++.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999997632 1 3999999873 799999999999877653
No 84
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.88 E-value=0.0022 Score=62.10 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=77.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc-------cccccc------c--------------------
Q 045434 15 GPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCR-------LRWTNY------L-------------------- 61 (316)
Q Consensus 15 g~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr-------~Rw~~~------L-------------------- 61 (316)
+.||.-|=..++.++.+||..+-..||..|+++++...++ .||..+ +
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999988999999995567765554 122111 0
Q ss_pred --------c----------CC-CCCCCCCHHHHHHHHHHHHHhC----Cchhhhhcc------------CCCCCHHHHHH
Q 045434 62 --------R----------PD-IKRGKFSQEEEQTILNLHSILG----NKWSAIAGH------------LPGRTDNEIKN 106 (316)
Q Consensus 62 --------~----------p~-lkkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~------------lpgRT~~qcr~ 106 (316)
+ +. .++..||.+||..||-++.+|| +.|..|-.. +..||+..+..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 11 1345799999999999999999 459999432 35799999999
Q ss_pred HHHHHhHHHhh
Q 045434 107 FWNTHLKKKLI 117 (316)
Q Consensus 107 Rw~~~L~~~l~ 117 (316)
|...+++-..+
T Consensus 284 Rc~tLi~~IeK 294 (374)
T 2y9y_A 284 RGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99998865433
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.76 E-value=0.0033 Score=55.51 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHhC-Cchhhhhc--cC------------CCCCHHHHHHHHHHHhH
Q 045434 69 KFSQEEEQTILNLHSILG-NKWSAIAG--HL------------PGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~~W~~IA~--~l------------pgRT~~qcr~Rw~~~L~ 113 (316)
.||.+||..||..|.+|| ++|..|.. .+ ..+++..+..|...+|+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 599999999999999999 88999964 21 12456678888765554
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.75 E-value=0.00037 Score=52.01 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTN 59 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~~~W~~IA~-~lgp~Rt~~qCr~Rw~~ 59 (316)
....||+||-++..+++.+|| .+|..|++ .+ ++|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v-~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFL-PWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTC-SSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHc-CCCCHHHHHHHHHh
Confidence 456899999999999999999 49999999 58 59999999877753
No 87
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.75 E-value=0.00034 Score=55.17 Aligned_cols=44 Identities=11% Similarity=0.279 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 045434 14 KGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTN 59 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~ 59 (316)
...||+||.+++.+++..|| .+|..|++.+ ++|+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l-~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFL-ERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTC-TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHc-CCCCHHHHHHHHhc
Confidence 46799999999999999999 5999999999 59999999877643
No 88
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.72 E-value=0.0025 Score=60.24 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=77.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHHhHH-------------------------------
Q 045434 67 RGKFSQEEEQTILNLHSILGN-KWSAIAGHLPGRTDNEIKNFWNTHLKK------------------------------- 114 (316)
Q Consensus 67 kg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~qcr~Rw~~~L~~------------------------------- 114 (316)
-+.||..|....+.++.+||. .|..||..|+|+|...|+..+......
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999994 699999999999999997654321111
Q ss_pred --H-----------------hhhCCCCCCCCCccchhhhcCChh---hhHHHHH------------HhccCCChHHHHHH
Q 045434 115 --K-----------------LIQMGFDPMTHRPRTDVFSSLPHL---IALANLK------------ELMENHTWEEQAVR 160 (316)
Q Consensus 115 --~-----------------l~~~~~t~eed~~l~~l~~~lg~~---~~w~~Ia------------~~l~~rt~n~~k~r 160 (316)
+ .+...||.+||+-|+-.+-.+| + ..|..|. -++-.||..++..|
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G-~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLG-FDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 1 0124689999998887777777 4 7898887 36677999999999
Q ss_pred HHHHHHH
Q 045434 161 LQAEMTK 167 (316)
Q Consensus 161 ~q~~~~k 167 (316)
-++++.-
T Consensus 269 c~tLi~~ 275 (304)
T 1ofc_X 269 CNTLITL 275 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8886643
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.57 E-value=0.00016 Score=55.63 Aligned_cols=49 Identities=22% Similarity=0.602 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---ccccccccccccccccc
Q 045434 13 KKGPWTSDEDQKLVKYIQKHGH---------GSWRALPKLA---GLNRCGKSCRLRWTNYL 61 (316)
Q Consensus 13 kkg~WT~EED~~L~~~V~k~G~---------~~W~~IA~~l---gp~Rt~~qCr~Rw~~~L 61 (316)
+...||.+|-..|+++...... .-|..||..| |..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999876321 1499999754 56899999999998754
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.50 E-value=0.00043 Score=51.42 Aligned_cols=47 Identities=13% Similarity=-0.030 Sum_probs=40.8
Q ss_pred CCCCCCCCccchhhhcCCh-hhhHHHHHHhccCCChHHHHHHHHHHHHH
Q 045434 120 GFDPMTHRPRTDVFSSLPH-LIALANLKELMENHTWEEQAVRLQAEMTK 167 (316)
Q Consensus 120 ~~t~eed~~l~~l~~~lg~-~~~w~~Ia~~l~~rt~n~~k~r~q~~~~k 167 (316)
-||.++|+.|+......|. .-.|+.||..| ||+.+++++||+.+|+-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4999999999988887772 34899999999 99999999999987753
No 91
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.43 E-value=0.00095 Score=52.27 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=42.7
Q ss_pred CCCCCCCCccchhhhcCCh-hhhHHHHHHhccCCChHHHHHHHHHHHHHH
Q 045434 120 GFDPMTHRPRTDVFSSLPH-LIALANLKELMENHTWEEQAVRLQAEMTKL 168 (316)
Q Consensus 120 ~~t~eed~~l~~l~~~lg~-~~~w~~Ia~~l~~rt~n~~k~r~q~~~~k~ 168 (316)
-||.++|+.|+......|- .-.|+.||+.|.+|+.+++++||+.+|+-.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 4999999999988888762 458999999999999999999999988643
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.42 E-value=0.016 Score=45.58 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=48.8
Q ss_pred hCCCCCCCCCccchhhhcCChhhhHHHHHHhcc-----CCChHHHHHHHHHHHHHHHHHhh
Q 045434 118 QMGFDPMTHRPRTDVFSSLPHLIALANLKELME-----NHTWEEQAVRLQAEMTKLQYLQY 173 (316)
Q Consensus 118 ~~~~t~eed~~l~~l~~~lg~~~~w~~Ia~~l~-----~rt~n~~k~r~q~~~~k~~~lq~ 173 (316)
...||.+|..-|.+|...+. .+|.-|+..+. +||..++|.|+....+|...+..
T Consensus 30 ~~~WT~eETd~LfdLc~~fd--lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFD--LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT--TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHcC--CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 36899999999999999999 99999999986 79999999999999988877664
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.21 E-value=0.1 Score=38.26 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc---hhhhhccC--CCCCHHHHHHHHHHHhH
Q 045434 65 IKRGKFSQEEEQTILNLHSILGNK---WSAIAGHL--PGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 65 lkkg~WT~EED~~Ll~lv~~~G~~---W~~IA~~l--pgRT~~qcr~Rw~~~L~ 113 (316)
..+-.||+|..++.+++|..+|.. +..|-+.| +|.|..+|+.+.+.|..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 346689999999999999999954 88998887 58999999998876643
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.73 E-value=0.052 Score=47.66 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=30.1
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 045434 6 CCDESGLKKGPWTSDEDQKLVKYIQKHGHGSWRALPK 42 (316)
Q Consensus 6 ~~~~~~lkkg~WT~EED~~L~~~V~k~G~~~W~~IA~ 42 (316)
.+..+.-....||.+||..|+.+|.+||.++|..|..
T Consensus 126 ~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 126 CHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp SCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 3334444455799999999999999999999999975
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.72 E-value=0.11 Score=48.13 Aligned_cols=28 Identities=39% Similarity=0.748 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 045434 15 GPWTSDEDQKLVKYIQKHGHGSWRALPK 42 (316)
Q Consensus 15 g~WT~EED~~L~~~V~k~G~~~W~~IA~ 42 (316)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999984
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.05 E-value=0.27 Score=45.60 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHhC-Cchhhhhc
Q 045434 69 KFSQEEEQTILNLHSILG-NKWSAIAG 94 (316)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G-~~W~~IA~ 94 (316)
.|+.+||.+||..|.+|| +.|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 599999999999999999 88999964
No 97
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=86.91 E-value=1.2 Score=42.90 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhhhccCC-CCCHHHHHHHHHH---------------------------------Hh
Q 045434 68 GKFSQEEEQTILNLHSILGN-KWSAIAGHLP-GRTDNEIKNFWNT---------------------------------HL 112 (316)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-~W~~IA~~lp-gRT~~qcr~Rw~~---------------------------------~L 112 (316)
+.||.-|=..++.++.+||. .-..||..|. |+|...|+..... .|
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999994 5999999997 8999999844322 22
Q ss_pred HHHh-------------------hhCCCCCCCCCccchhhhcCChh---hhHHHHHHh------------ccCCChHHHH
Q 045434 113 KKKL-------------------IQMGFDPMTHRPRTDVFSSLPHL---IALANLKEL------------MENHTWEEQA 158 (316)
Q Consensus 113 ~~~l-------------------~~~~~t~eed~~l~~l~~~lg~~---~~w~~Ia~~------------l~~rt~n~~k 158 (316)
+.++ +...||.+||+-|+..+-.+| + ..|..|... +..||..++.
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G-~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYG-LDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHT-TCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 2221 233477888888887776666 3 678888554 5669999999
Q ss_pred HHHHHHHHH
Q 045434 159 VRLQAEMTK 167 (316)
Q Consensus 159 ~r~q~~~~k 167 (316)
.|-.++++-
T Consensus 283 rRc~tLi~~ 291 (374)
T 2y9y_A 283 RRGNTLLQC 291 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887753
No 98
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=86.42 E-value=0.24 Score=36.25 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=36.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC---ccccccccc-cccccccccccccc
Q 045434 11 GLKKGPWTSDEDQKLVKYIQKHGHGS---WRALPKLAG-LNRCGKSCRLRWTN 59 (316)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~k~G~~~---W~~IA~~lg-p~Rt~~qCr~Rw~~ 59 (316)
...+-.||+|..++++++|...|. + ++.|.+.|+ ++.|..++..+.++
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 445788999999999999999994 4 667877765 25666666655443
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=60.14 E-value=5.9 Score=31.60 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=31.1
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCCHHHHHHHHHHHhHHH
Q 045434 77 TILNLHSILGN--------KWSAIAGHLPGRTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRT~~qcr~Rw~~~L~~~ 115 (316)
+|..+|.+.|| .|..||..|.--.+..+|..|..+|.+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 47788888874 5999999985444789999999988764
No 100
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=59.20 E-value=14 Score=28.72 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCC--------chhhhhccCCC-CC---HHHHHHHHHHHhHHH
Q 045434 76 QTILNLHSILGN--------KWSAIAGHLPG-RT---DNEIKNFWNTHLKKK 115 (316)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lpg-RT---~~qcr~Rw~~~L~~~ 115 (316)
-+|..+|.+.|+ .|..|+..|.- .+ +.++|..|..+|.+-
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 347777777774 59999999942 22 568899999988764
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=57.69 E-value=12 Score=29.78 Aligned_cols=40 Identities=10% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCC--------chhhhhccCCCC----CHHHHHHHHHHHhHHH
Q 045434 76 QTILNLHSILGN--------KWSAIAGHLPGR----TDNEIKNFWNTHLKKK 115 (316)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lpgR----T~~qcr~Rw~~~L~~~ 115 (316)
-+|..+|.+.|| .|..|+..|.-- .+.++|..|..+|.+-
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 357788888884 599999998422 1568899999888764
No 102
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=54.42 E-value=10 Score=32.56 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=22.4
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCCCCccccc
Q 045434 10 SGLKKGPWTSDEDQKLV--------KYIQKHGHGSWRALP 41 (316)
Q Consensus 10 ~~lkkg~WT~EED~~L~--------~~V~k~G~~~W~~IA 41 (316)
|.-..|-||+|+|+.|. ++++||| |..|.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 44568999999999985 6888898 44444
No 103
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=54.40 E-value=16 Score=29.42 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC--------chhhhhccCCC-C---CHHHHHHHHHHHhHHHh
Q 045434 77 TILNLHSILGN--------KWSAIAGHLPG-R---TDNEIKNFWNTHLKKKL 116 (316)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpg-R---T~~qcr~Rw~~~L~~~l 116 (316)
+|..+|.+.|+ .|..|+..|.- . .+.++|..|..+|.+--
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 47778888874 59999999842 2 25688999999998753
No 104
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=53.01 E-value=3.7 Score=33.36 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=33.1
Q ss_pred Ccccccccccccccc----ccccccccccccCCCCCCCCCHHHHHHHHHHHH
Q 045434 36 SWRALPKLAGLNRCG----KSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHS 83 (316)
Q Consensus 36 ~W~~IA~~lgp~Rt~----~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~ 83 (316)
.|..||..+|...+. ...+..|.++|.+- ..++++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 599999999865433 35678888888763 2378888888887665
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=52.62 E-value=8.7 Score=31.09 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHHHHHHHhCC--------chhhhhccCCCCCHHHHHHHHHHHhHHHhh
Q 045434 77 TILNLHSILGN--------KWSAIAGHLPGRTDNEIKNFWNTHLKKKLI 117 (316)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~ 117 (316)
+|..+|.+.|+ .|..|+..|.--.+..+|..|..+|.+.-.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 36666766664 499999998543489999999999988644
No 106
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.55 E-value=17 Score=29.12 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC--------chhhhhccCCC-C---CHHHHHHHHHHHhHHH
Q 045434 77 TILNLHSILGN--------KWSAIAGHLPG-R---TDNEIKNFWNTHLKKK 115 (316)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpg-R---T~~qcr~Rw~~~L~~~ 115 (316)
+|..+|.+.|+ .|..|+..|.- . .+..+|..|..+|.+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47778888874 59999999842 1 1468899999988774
No 107
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=50.24 E-value=20 Score=28.81 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCC--------chhhhhccCC--CC---CHHHHHHHHHHHhHHH
Q 045434 76 QTILNLHSILGN--------KWSAIAGHLP--GR---TDNEIKNFWNTHLKKK 115 (316)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lp--gR---T~~qcr~Rw~~~L~~~ 115 (316)
-+|..+|.+.|| .|..|+..|. .. .+..+|..|..+|.+-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 457788888885 5999999984 22 2578899999999875
No 108
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=45.56 E-value=65 Score=24.76 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc---ccccccc--cCCCCCCCCCHHHHHHHHHHHHHhC-Cch
Q 045434 16 PWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCR---LRWTNYL--RPDIKRGKFSQEEEQTILNLHSILG-NKW 89 (316)
Q Consensus 16 ~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr---~Rw~~~L--~p~lkkg~WT~EED~~Ll~lv~~~G-~~W 89 (316)
..|.++-..++.++ .-| ..-.+||+.+| .+...++ .+|...- ...-.....+.+++..|+.+ ...+ -.=
T Consensus 6 ~~s~~~r~~i~~~~-~~G-~s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s~ 80 (141)
T 1u78_A 6 ALSDTERAQLDVMK-LLN-VSLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKTA 80 (141)
T ss_dssp CCCHHHHHHHHHHH-HTT-CCHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCCH
T ss_pred cCCHHHHHHHHHHH-HcC-CCHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCCH
Confidence 56788877777777 346 47889999997 4333332 2332211 11112235788888888877 3333 335
Q ss_pred hhhhccCCC-CCHHHHH
Q 045434 90 SAIAGHLPG-RTDNEIK 105 (316)
Q Consensus 90 ~~IA~~lpg-RT~~qcr 105 (316)
..|+..++- -+...++
T Consensus 81 ~~i~~~lg~~~s~~tV~ 97 (141)
T 1u78_A 81 RDIRNELQLSASKRTIL 97 (141)
T ss_dssp HHHHHHTTCCSCHHHHH
T ss_pred HHHHHHHCCCccHHHHH
Confidence 677777721 3444444
No 109
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=43.09 E-value=24 Score=28.48 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHH--HHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-
Q 045434 11 GLKKGPWTSDED--QKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGN- 87 (316)
Q Consensus 11 ~lkkg~WT~EED--~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lv~~~G~- 87 (316)
+.-+.+|.+.+. +.|.+..+..|. ....+... | +|.- + =-+|..+|.+.|+
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~-gk~l-----------D------------L~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-G-GCEL-----------D------------LACFFRLINEMGGM 57 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-T-TEEC-----------C------------HHHHHHHHHHTTSH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-C-CEec-----------c------------HHHHHHHHHHcCcH
Confidence 344678987765 457777777785 55555432 2 2222 1 1357788888885
Q ss_pred -------chhhhhccCC--CC---CHHHHHHHHHHHhHHHh
Q 045434 88 -------KWSAIAGHLP--GR---TDNEIKNFWNTHLKKKL 116 (316)
Q Consensus 88 -------~W~~IA~~lp--gR---T~~qcr~Rw~~~L~~~l 116 (316)
.|..||..|. .- ....+|..|..+|.+.-
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 4999999983 21 25678999998887753
No 110
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=42.88 E-value=25 Score=28.99 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCC--------chhhhhccCC--CC---CHHHHHHHHHHHhHHH
Q 045434 76 QTILNLHSILGN--------KWSAIAGHLP--GR---TDNEIKNFWNTHLKKK 115 (316)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lp--gR---T~~qcr~Rw~~~L~~~ 115 (316)
-+|..+|.+.|+ .|..|+..|. .. .+..+|..|..+|.+.
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 357778888875 5999999984 22 2578899999999875
No 111
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=42.25 E-value=12 Score=28.42 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC--------chhhhhccCCC----CCHHHHHHHHHHHhHHH
Q 045434 77 TILNLHSILGN--------KWSAIAGHLPG----RTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpg----RT~~qcr~Rw~~~L~~~ 115 (316)
+|..+|.+.|+ .|..|+..|.- -.+.++|..|..+|.+-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 47777777764 59999998832 12568888888887653
No 112
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=40.62 E-value=4.5 Score=32.30 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=28.1
Q ss_pred HHHHHHHHhCC-------CCccccccccccccccccccccccccccC
Q 045434 24 KLVKYIQKHGH-------GSWRALPKLAGLNRCGKSCRLRWTNYLRP 63 (316)
Q Consensus 24 ~L~~~V~k~G~-------~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p 63 (316)
+|..+|.+.|. +.|..||..+|... +..++..|.++|.+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 56677777763 36999999998544 67777778777754
No 113
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=37.61 E-value=40 Score=22.83 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 73 EEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 73 EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
+.+..++.++-..|-.+.+||..+ |-+...++.+....++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARD 57 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344455555556678899999999 7788888877665443
No 114
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=36.27 E-value=7.4 Score=29.87 Aligned_cols=45 Identities=20% Similarity=0.516 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCccccccccccccccccccccccccccCCC-------CCCCCCHHHHHHHH
Q 045434 22 DQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI-------KRGKFSQEEEQTIL 79 (316)
Q Consensus 22 D~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p~l-------kkg~WT~EED~~Ll 79 (316)
+.+|.++|+.|| |..+++.+. ..|.. -+|.+ +|.+|-.+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999999 999998774 23332 34543 57788888777664
No 115
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=35.91 E-value=14 Score=28.84 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCC--------chhhhhccCCC-----CCHHHHHHHHHHHhHHH
Q 045434 76 QTILNLHSILGN--------KWSAIAGHLPG-----RTDNEIKNFWNTHLKKK 115 (316)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lpg-----RT~~qcr~Rw~~~L~~~ 115 (316)
-+|..+|.+.|| .|..||..|.- -.+.++|..|..+|.+-
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 347777777773 59999998841 12467899999888764
No 116
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.02 E-value=36 Score=23.82 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHH----hCCchhhhhccCCCCCHHHHHHHHHHHhHH
Q 045434 71 SQEEEQTILNLHSI----LGNKWSAIAGHLPGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 71 T~EED~~Ll~lv~~----~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~ 114 (316)
++.|- .++.+.-. .|-.+.+||..| |-+...|+.+....+++
T Consensus 12 ~~~er-~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 12 SEREA-MVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp CHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 44444 44444433 456799999999 88999998877665543
No 117
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.88 E-value=27 Score=28.69 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhHHHhhh
Q 045434 73 EEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQ 118 (316)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~ 118 (316)
+-|.+|+.+.++.| -.|..||+.+ |-+...|+.|...+....+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 46888888888777 4599999999 899999999998888777655
No 118
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.32 E-value=75 Score=23.15 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHH---hHHHhhhCC
Q 045434 74 EEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTH---LKKKLIQMG 120 (316)
Q Consensus 74 ED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~---L~~~l~~~~ 120 (316)
.+..++.++-..|-.-..||..| |-+...|+.+.... |+..+...+
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555567799999999 77888888776543 444444443
No 119
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=28.01 E-value=1.3e+02 Score=23.96 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc---ccccc--cccCCCC----CCCCCHHHHHHHHHHHHH
Q 045434 14 KGPWTSDEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCR---LRWTN--YLRPDIK----RGKFSQEEEQTILNLHSI 84 (316)
Q Consensus 14 kg~WT~EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr---~Rw~~--~L~p~lk----kg~WT~EED~~Ll~lv~~ 84 (316)
..+.|.++-..++.++. .| ....+||+.+|. +...++ .+|.. .+.+... ....+.++.+.|++++.+
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lgi--s~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLRV--SHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHTC--CSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34688888888888884 56 478899999973 333322 23322 1222211 235788888888888876
Q ss_pred hC-CchhhhhccC
Q 045434 85 LG-NKWSAIAGHL 96 (316)
Q Consensus 85 ~G-~~W~~IA~~l 96 (316)
.. ..-..|+..+
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 53 2233444433
No 120
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=27.29 E-value=43 Score=23.04 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=22.8
Q ss_pred CCchhhhhccCCCCCHHHHHHHHHHHhHH
Q 045434 86 GNKWSAIAGHLPGRTDNEIKNFWNTHLKK 114 (316)
Q Consensus 86 G~~W~~IA~~lpgRT~~qcr~Rw~~~L~~ 114 (316)
|-.+.+||..| |-+...++.+....+++
T Consensus 25 g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 25 DYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp CCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 56799999999 88999999887765543
No 121
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=25.21 E-value=79 Score=21.68 Aligned_cols=25 Identities=12% Similarity=-0.096 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCchhhhhccCC
Q 045434 73 EEEQTILNLHSILGNKWSAIAGHLP 97 (316)
Q Consensus 73 EED~~Ll~lv~~~G~~W~~IA~~lp 97 (316)
-|.+.|.+++..++++....|+.|+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4778899999999999999999883
No 122
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.04 E-value=69 Score=26.55 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhHHHhhh
Q 045434 72 QEEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQ 118 (316)
Q Consensus 72 ~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~ 118 (316)
.+-|.+|+.+++..| -.+.+||+.+ |-+...|+.|...+....+.+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 356778888888877 4599999999 789999999998877776654
No 123
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.80 E-value=1.1e+02 Score=24.25 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHHhHHHhhh
Q 045434 73 EEEQTILNLHSILG-NKWSAIAGHLPGRTDNEIKNFWNTHLKKKLIQ 118 (316)
Q Consensus 73 EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~qcr~Rw~~~L~~~l~~ 118 (316)
+-|.+|+.+++..| -.+.+||+.+ |-+...|+.|...+.+..+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 45677888888776 4599999999 789999999998887776554
No 124
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.56 E-value=32 Score=25.63 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccc
Q 045434 20 DEDQKLVKYIQKHGHGSWRALPKLAGLNRC 49 (316)
Q Consensus 20 EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt 49 (316)
-|.+.|.+++.+++ ++..+.|+.+|..|+
T Consensus 51 ~E~~~i~~aL~~~~-gn~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 51 LERTLLTTALRHTQ-GHKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHHTT-TCTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHH
Confidence 46777888888888 689999999986654
No 125
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.89 E-value=12 Score=30.85 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccccccccccccccC
Q 045434 20 DEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP 63 (316)
Q Consensus 20 EED~~L~~~V~k~G~~~W~~IA~~lgp~Rt~~qCr~Rw~~~L~p 63 (316)
+-|.+|+.+.++.|.-.|.+||+.+| -+...|+.|..+....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 56888999999998889999999997 7777788777665443
No 126
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.66 E-value=1.2e+02 Score=22.46 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHH
Q 045434 72 QEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKN 106 (316)
Q Consensus 72 ~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~ 106 (316)
.-|.+.|.+++..++++....|+.| |=+...++.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~r 83 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 3477888999999999999999999 545444443
No 127
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=21.92 E-value=27 Score=29.02 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=26.6
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCHHHHHHHHH
Q 045434 38 RALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILN 80 (316)
Q Consensus 38 ~~IA~~lgp~Rt~~qCr~Rw~~~L~p~lkkg~WT~EED~~Ll~ 80 (316)
..||..+. |++..+||..+. + ...||+||++.+.+
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 56777884 899999988663 2 23599999998764
No 128
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.67 E-value=50 Score=28.24 Aligned_cols=17 Identities=12% Similarity=0.477 Sum_probs=14.8
Q ss_pred CCCCCCCCCHHHHHHHH
Q 045434 63 PDIKRGKFSQEEEQTIL 79 (316)
Q Consensus 63 p~lkkg~WT~EED~~Ll 79 (316)
|....|-||.|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 56679999999999986
No 129
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.35 E-value=1.4e+02 Score=20.48 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHHhH
Q 045434 70 FSQEEEQTILNLHSILGNKWSAIAGHLPGRTDNEIKNFWNTHLK 113 (316)
Q Consensus 70 WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~qcr~Rw~~~L~ 113 (316)
.|+.|-+.| .++ ..|-.-.+||..| |-+...++.+....++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455554444 444 5567799999999 7888888887665443
Done!