BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045438
         (363 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2
 pdb|1T5A|B Chain B, Human Pyruvate Kinase M2
 pdb|1T5A|C Chain C, Human Pyruvate Kinase M2
 pdb|1T5A|D Chain D, Human Pyruvate Kinase M2
          Length = 567

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 310 KPTAAAGTNTVSNSLLTAVSTCSVVGVIAWGDFKFSKIPQRNVELKQVEIIEFH 363
           +PT A G++ V+N++L       + G  A GD+    +  +N+  ++ E   +H
Sbjct: 375 RPTRAEGSD-VANAVLDGADCIMLSGETAKGDYPLEAVRMQNLIAREAEAAIYH 427


>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJT|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJT|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJT|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
          Length = 530

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 310 KPTAAAGTNTVSNSLLTAVSTCSVVGVIAWGDFKFSKIPQRNVELKQVEIIEFH 363
           +PT A G++ V+N++L       + G  A GD+    +  +N+  ++ E   +H
Sbjct: 338 RPTRAEGSD-VANAVLDGADCIMLSGETAKGDYPLEAVRMQNLIAREAEAAIYH 390


>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJF|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJF|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
 pdb|3BJF|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
          Length = 518

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 310 KPTAAAGTNTVSNSLLTAVSTCSVVGVIAWGDFKFSKIPQRNVELKQVEIIEFH 363
           +PT A G++ V+N++L       + G  A GD+    +  +N+  ++ E   +H
Sbjct: 326 RPTRAEGSD-VANAVLDGADCIMLSGETAKGDYPLEAVRMQNLIAREAEAAIYH 378


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,438,859
Number of Sequences: 62578
Number of extensions: 412077
Number of successful extensions: 771
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 3
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)