BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045438
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FL53|FLA21_ARATH Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana
GN=FLA21 PE=2 SV=1
Length = 353
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 27/272 (9%)
Query: 30 GFNKLATAAPSLSSDIVSEHFVPGLFTIHYLRKLDFGTKIEMRSPGRCITVTFSESQNDT 89
F ++ P ++ H +P + ++ L K GT + + + ++ ++ T
Sbjct: 91 SFFNTSSLHPLFLKQLLHYHTLPLMLSMDDLLKKPQGTCLPTLLHHKSVQISTVNQESRT 150
Query: 90 VSKVFIGGVEITRPDLFNDGIIFIHGIQGIISPLPLLSCEGQRMTWLPFPFQPSDHGHYH 149
+ V IT PD+F + IHG+ G SPL + + P SD +
Sbjct: 151 AE---VNHVRITHPDMFLGDSLVIHGVIGPFSPL-----QPHSDHLIHTPLCQSDTTNKT 202
Query: 150 WIEAQSPIMSLMLRDAMLRLQNSGF-----GMLSLAMKLIT-------LTAMTVFAFDNM 197
+ P+ R L L ++GF G+ S+ +++ LT +T+ A N+
Sbjct: 203 SNNEEVPVSIDWTRIVQL-LSSNGFVPFAIGLHSVLNRIVNDHNHHKNLTGVTILATPNL 261
Query: 198 -SIFSSSPVYISNVRFHIVPNRYLRIGDLHRLPAGTTLPTLERGQSLTVTRGGVVT--GP 254
S+ S+SP VR HI+ R L D + T+ TL+ Q LT+TR V + G
Sbjct: 262 VSLSSASPFLYEVVRHHILVQR-LTYKDFASMSDKATVKTLDPYQDLTITRRNVNSSGGD 320
Query: 255 FRINLVRIMVPDIMNSLKIIVYGVN--LPFPH 284
F I+ V I+ PD+ +S +++G++ L PH
Sbjct: 321 FMISGVEIVDPDMFSSSNFVIHGISHTLEIPH 352
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 190 TVFAFDNMSIFSSS---PVYISNV-RFHIVPNRYLRIGDLHRLPAGTTLPTLERGQSLTV 245
T+FA ++ S F++S P+++ + +H +P L + DL + P GT LPTL +S+ +
Sbjct: 83 TLFAIEDASFFNTSSLHPLFLKQLLHYHTLP-LMLSMDDLLKKPQGTCLPTLLHHKSVQI 141
Query: 246 TRGGVVTGPFRINLVRIMVPDIMNSLKIIVYGVNLPF 282
+ + +N VRI PD+ ++++GV PF
Sbjct: 142 STVNQESRTAEVNHVRITHPDMFLGDSLVIHGVIGPF 178
>sp|Q5Q0H2|FLA19_ARATH Fasciclin-like arabinogalactan protein 19 OS=Arabidopsis thaliana
GN=FLA19 PE=2 SV=2
Length = 248
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 179 LAMKLITLTAMTVFAFDNMSIFS-----SSPVYISNVRFHIVPNRYLRIGDLHRLPAGTT 233
L L++ ++T+FA + +F S P Y+S +R H VP R L + L LP ++
Sbjct: 59 LLFDLLSDESLTLFAPTDSMLFDLDMTHSLPFYVSTLRLHSVPLR-LSLSGLRSLPNSSS 117
Query: 234 LPTLERGQSLTVTRGGVVTGPFRINLVRIMVPDIMNSLKIIVYGV 278
LPTL L +T+ ++ V++++P + + I V+G+
Sbjct: 118 LPTLLPSHRLLLTKHSSSNDSIFLDGVQLLIPGLFDGQHIAVHGL 162
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 49 HFVPGLFTIHYLRKLDFGTKIEMRSPGRCITVTFSESQNDTVSKVFIGGVEITRPDLFND 108
H VP ++ LR L + + P + +T S ND++ F+ GV++ P LF+
Sbjct: 98 HSVPLRLSLSGLRSLPNSSSLPTLLPSHRLLLTKHSSSNDSI---FLDGVQLLIPGLFDG 154
Query: 109 GIIFIHGIQGII 120
I +HG+ ++
Sbjct: 155 QHIAVHGLADLL 166
>sp|Q9FGW0|FLA20_ARATH Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis
thaliana GN=FLA20 PE=3 SV=1
Length = 424
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 165 AMLRLQNSGFGMLSLAMKLIT-------LTAMTVFAFDNMSIFSSSPVYISNVRFHIVPN 217
A+ L +SG+ + L +KL +T+FA + S + ++++ + P
Sbjct: 72 AVEVLSDSGYLSMGLTLKLANQDLNLEDWQELTLFAPSDQSFSKFGQPSLLDMKYQLSPT 131
Query: 218 RYLRIGDLHRLPAGTTLPTLERGQSLTVTRGGVVTGPFRINLVRIMVPDIMNSLKIIVYG 277
R L L LP G +PTL SLTVT G IN V + + + +++YG
Sbjct: 132 R-LPGETLRNLPNGAKIPTLRSNYSLTVTNSSRFGGKTSINNVVVQDSPVFDDGYVVIYG 190
>sp|Q54J11|GXCI_DICDI RhoGEF domain-containing protein gxcI OS=Dictyostelium discoideum
GN=gxcI PE=3 SV=3
Length = 1082
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 3 HLRWCRTSTTSPRPSHKPMLPPILSHLGFNKLATAAPSLSSDIVSEHFVPGLFTIHYLRK 62
++++ T+ S +PS K +LPPI S FNK+ +D + + V + ++Y
Sbjct: 595 NVQYTITTQLSQKPSRKSLLPPINSSTSFNKVIKEIIETEADYIDQMEV--IINLYYFAA 652
Query: 63 LDFG 66
L+
Sbjct: 653 LEMS 656
>sp|P0DH64|Y4891_SELML FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella
moellendorffii GN=SELMODRAFT_448915 PE=2 SV=1
Length = 260
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 225 LHRLPAGTTLPTLERGQSLTVTRGGVVTGPFRINLVRIMVPDIMNSLKIIV-YGVN 279
L R G LPT+ +G+ +TVT G F +N V I PD+ +S + I +G++
Sbjct: 142 LSRNDVGAELPTMLQGEMITVTSNS--PGNFTLNEVNITHPDVCSSTRFIACHGID 195
>sp|Q18LE0|MCP_ELHVK Major capsid protein OS=Elephantid herpesvirus 1 (isolate Asian
elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1349
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 288 TAFDVHSI----RLTDTDGGEYFDGTKPTAAAGTNTVSNSLLTAVSTCSVVGVIAWGDFK 343
TA HSI L T GG+ G T + N ++N + SVV +A+G+F
Sbjct: 253 TALVKHSIMVDSSLYTTSGGDEVSGVLVTTSNVLNVITNMFSKLIHKASVVAPVAYGEFI 312
Query: 344 FSK 346
SK
Sbjct: 313 MSK 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,458,867
Number of Sequences: 539616
Number of extensions: 5739841
Number of successful extensions: 11408
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11394
Number of HSP's gapped (non-prelim): 13
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)