BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045439
         (113 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To
          Acrb: Plasticity Of The Interface
 pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To
          Acrb: Plasticity Of The Interface
          Length = 169

 Score = 28.5 bits (62), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 3  IKETDQYLWTPIYYAAYHNQYQQIYVLLE 31
          +  +D   WTP++ AAY    + + VLL+
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLK 68


>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
           (3')-Iiia In Complex With The Inhibitor Ar_3a
 pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
           (3')-Iiia In Complex With The Inhibitor Ar_3a
          Length = 169

 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 3   IKETDQYLWTPIYYAAYHNQYQQIYVLLE 31
           +  +D+  WTP++ AAY    + + VLL+
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVLLK 101


>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
          Ankyrin Repeat Domains Of Human Ankra2
 pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
          Ankyrin Repeat Domains Of Human Ankra2
          Length = 167

 Score = 26.2 bits (56), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 1  SLIKETDQYLWTPIYYAAYHNQYQQIYVLLE--IDP 34
          ++I  TD+  +TP+ +AA H Q   +  LL+   DP
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62


>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
          Length = 162

 Score = 26.2 bits (56), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 1  SLIKETDQYLWTPIYYAAYHNQYQQIYVLLE--IDP 34
          ++I  TD+  +TP+ +AA H Q   +  LL+   DP
Sbjct: 25 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 60


>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
          Ankyrin Repeat Domains Of Human Ankra2
          Length = 183

 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 1  SLIKETDQYLWTPIYYAAYHNQYQQIYVLLE--IDP 34
          ++I  TD+  +TP+ +AA H Q   +  LL+   DP
Sbjct: 43 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 78


>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
          Length = 775

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 2   LIKETDQYLWTPIYYAAYHNQYQQIYVLLEIDPTASNI 39
            +KE ++ LW  I Y  Y + Y  I +   + P   N+
Sbjct: 389 FVKEPEKGLWENIVYLDYKSLYPSIIITHNVSPDTLNL 426


>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
           D.Tok. Deposition Of Second Native Structure At 2.4
           Angstrom
          Length = 733

 Score = 25.0 bits (53), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 3   IKETDQYLWTPIYYAAYHNQYQQIYVLLEIDPTASN 38
           +KE ++ LW  I Y  Y + Y  I +   + P   N
Sbjct: 389 VKEPEKGLWENIVYLDYKSLYPSIIITHNVSPDTLN 424


>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
           D.Tok
          Length = 773

 Score = 25.0 bits (53), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 3   IKETDQYLWTPIYYAAYHNQYQQIYVLLEIDPTASN 38
           +KE ++ LW  I Y  Y + Y  I +   + P   N
Sbjct: 389 VKEPEKGLWENIVYLDYKSLYPSIIITHNVSPDTLN 424


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,990,342
Number of Sequences: 62578
Number of extensions: 85507
Number of successful extensions: 229
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 18
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)