Query 045440
Match_columns 98
No_of_seqs 113 out of 742
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 13:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1441 Glucose-6-phosphate/ph 99.8 1.4E-19 2.9E-24 140.1 1.5 71 1-72 246-316 (316)
2 PF03151 TPT: Triose-phosphate 99.7 2.5E-17 5.4E-22 112.0 3.2 62 1-63 92-153 (153)
3 PTZ00343 triose or hexose phos 99.4 5.2E-13 1.1E-17 103.5 4.1 64 1-65 287-350 (350)
4 KOG1444 Nucleotide-sugar trans 99.3 6.4E-13 1.4E-17 102.8 3.0 72 1-73 239-310 (314)
5 TIGR00817 tpt Tpt phosphate/ph 99.2 7.6E-12 1.6E-16 94.0 4.1 69 3-72 234-302 (302)
6 KOG1442 GDP-fucose transporter 99.1 1.3E-12 2.8E-17 100.6 -4.4 77 1-78 266-342 (347)
7 PF08449 UAA: UAA transporter 98.9 1.8E-09 3.8E-14 81.8 5.6 65 4-69 239-303 (303)
8 KOG1443 Predicted integral mem 98.9 1.7E-09 3.7E-14 84.2 3.6 62 1-63 254-315 (349)
9 COG5070 VRG4 Nucleotide-sugar 98.6 1.6E-08 3.4E-13 76.6 2.5 72 1-73 235-306 (309)
10 KOG1583 UDP-N-acetylglucosamin 98.4 4.1E-07 8.8E-12 70.4 4.7 68 5-73 250-324 (330)
11 PLN00411 nodulin MtN21 family 97.9 2.3E-05 4.9E-10 61.6 6.2 85 7-98 273-358 (358)
12 TIGR00803 nst UDP-galactose tr 97.8 3.8E-06 8.3E-11 60.7 -0.0 56 5-61 167-222 (222)
13 KOG1580 UDP-galactose transpor 97.6 6.9E-05 1.5E-09 57.5 4.1 56 5-61 256-311 (337)
14 PRK10532 threonine and homoser 97.4 0.00046 1E-08 52.0 5.9 60 7-67 226-285 (293)
15 PF04142 Nuc_sug_transp: Nucle 97.3 0.00025 5.4E-09 53.1 3.8 65 3-68 30-94 (244)
16 KOG1581 UDP-galactose transpor 97.3 0.00014 2.9E-09 56.9 2.4 64 5-69 256-319 (327)
17 PF00892 EamA: EamA-like trans 97.3 0.00069 1.5E-08 43.2 4.9 58 4-62 68-125 (126)
18 PF06027 DUF914: Eukaryotic pr 97.1 0.00036 7.8E-09 54.8 3.1 62 9-71 252-313 (334)
19 PRK09541 emrE multidrug efflux 96.5 0.0045 9.7E-08 41.5 4.0 46 16-62 57-102 (110)
20 COG2076 EmrE Membrane transpor 96.4 0.0057 1.2E-07 41.1 4.2 47 16-63 57-103 (106)
21 PRK11431 multidrug efflux syst 96.4 0.0051 1.1E-07 40.9 3.9 45 16-61 56-100 (105)
22 PRK15430 putative chlorampheni 96.4 0.0056 1.2E-07 46.1 4.6 60 6-66 229-288 (296)
23 PRK10650 multidrug efflux syst 96.3 0.0063 1.4E-07 40.8 4.0 45 16-61 62-106 (109)
24 PRK15051 4-amino-4-deoxy-L-ara 96.3 0.0056 1.2E-07 40.7 3.7 43 16-60 64-106 (111)
25 PRK11689 aromatic amino acid e 96.3 0.0076 1.7E-07 45.4 4.9 56 6-62 231-286 (295)
26 TIGR00950 2A78 Carboxylate/Ami 96.3 0.0068 1.5E-07 43.9 4.2 52 6-58 208-259 (260)
27 PRK15430 putative chlorampheni 96.2 0.009 1.9E-07 45.0 4.8 59 3-62 86-144 (296)
28 PRK10452 multidrug efflux syst 96.2 0.01 2.2E-07 40.4 4.6 45 16-61 57-101 (120)
29 PF13536 EmrE: Multidrug resis 96.2 0.018 3.8E-07 37.7 5.5 60 6-67 51-110 (113)
30 PRK11272 putative DMT superfam 96.2 0.014 3E-07 43.8 5.6 60 6-66 229-288 (292)
31 TIGR00688 rarD rarD protein. T 96.1 0.0093 2E-07 43.7 4.4 56 4-60 84-139 (256)
32 KOG3912 Predicted integral mem 96.1 0.0043 9.3E-08 48.7 2.6 64 2-66 274-337 (372)
33 PF06027 DUF914: Eukaryotic pr 96.0 0.0061 1.3E-07 47.9 3.1 61 4-65 93-153 (334)
34 TIGR00817 tpt Tpt phosphate/ph 95.9 0.0087 1.9E-07 44.9 3.5 57 4-61 79-135 (302)
35 PRK11453 O-acetylserine/cystei 95.9 0.017 3.6E-07 43.6 5.1 56 9-65 234-289 (299)
36 TIGR00950 2A78 Carboxylate/Ami 95.9 0.014 3E-07 42.3 4.4 58 4-62 61-118 (260)
37 PF08449 UAA: UAA transporter 95.8 0.015 3.2E-07 44.0 4.4 68 4-72 78-145 (303)
38 PLN00411 nodulin MtN21 family 95.5 0.015 3.3E-07 45.7 3.5 59 3-62 91-155 (358)
39 TIGR03340 phn_DUF6 phosphonate 95.4 0.023 5.1E-07 42.3 4.0 57 5-62 78-134 (281)
40 TIGR03340 phn_DUF6 phosphonate 94.6 0.03 6.5E-07 41.7 2.8 53 7-60 228-280 (281)
41 PF07857 DUF1632: CEO family ( 94.6 0.12 2.6E-06 39.3 5.9 30 43-72 114-143 (254)
42 KOG2234 Predicted UDP-galactos 94.5 0.073 1.6E-06 42.3 4.7 58 4-62 106-163 (345)
43 PTZ00343 triose or hexose phos 94.4 0.045 9.8E-07 42.6 3.4 57 5-62 129-185 (350)
44 COG0697 RhaT Permeases of the 94.4 0.1 2.2E-06 37.5 5.1 57 7-64 232-288 (292)
45 PRK02971 4-amino-4-deoxy-L-ara 93.9 0.075 1.6E-06 36.4 3.3 34 29-63 87-122 (129)
46 COG2510 Predicted membrane pro 93.1 0.041 8.9E-07 38.5 0.9 32 28-60 105-136 (140)
47 KOG2234 Predicted UDP-galactos 92.9 0.31 6.6E-06 38.8 5.7 60 8-68 268-327 (345)
48 KOG1582 UDP-galactose transpor 92.7 0.18 3.9E-06 39.7 4.1 56 9-65 279-334 (367)
49 PRK11689 aromatic amino acid e 92.7 0.15 3.3E-06 38.3 3.6 49 13-62 88-136 (295)
50 COG0697 RhaT Permeases of the 92.4 0.29 6.2E-06 35.2 4.7 62 4-66 84-146 (292)
51 PRK11453 O-acetylserine/cystei 92.1 0.2 4.4E-06 37.7 3.7 54 8-62 77-131 (299)
52 PF00893 Multi_Drug_Res: Small 92.1 0.11 2.5E-06 33.2 2.0 37 16-53 56-92 (93)
53 TIGR00776 RhaT RhaT L-rhamnose 91.0 0.37 8E-06 36.5 4.1 54 9-63 230-288 (290)
54 KOG2765 Predicted membrane pro 90.3 0.077 1.7E-06 42.9 -0.2 65 3-68 172-236 (416)
55 PRK11272 putative DMT superfam 90.3 0.71 1.5E-05 34.6 5.1 54 7-62 86-140 (292)
56 TIGR00776 RhaT RhaT L-rhamnose 90.1 0.25 5.3E-06 37.4 2.5 61 4-65 73-138 (290)
57 COG2962 RarD Predicted permeas 88.0 0.74 1.6E-05 35.9 3.8 54 18-72 239-292 (293)
58 PF06679 DUF1180: Protein of u 83.6 2.5 5.5E-05 30.3 4.4 41 48-88 101-144 (163)
59 PF10639 UPF0546: Uncharacteri 82.8 0.74 1.6E-05 31.1 1.4 44 16-60 68-111 (113)
60 KOG2766 Predicted membrane pro 80.9 1.2 2.5E-05 34.9 2.0 50 10-62 249-298 (336)
61 PF05961 Chordopox_A13L: Chord 75.5 6.8 0.00015 24.3 3.9 25 46-70 5-29 (68)
62 PHA03049 IMV membrane protein; 72.8 8.2 0.00018 23.9 3.8 26 45-70 4-29 (68)
63 COG2962 RarD Predicted permeas 72.0 4.5 9.8E-05 31.6 3.1 50 12-62 94-143 (293)
64 PF05653 Mg_trans_NIPA: Magnes 72.0 3.3 7.2E-05 31.9 2.4 55 7-62 67-121 (300)
65 COG5006 rhtA Threonine/homoser 69.3 11 0.00024 29.3 4.7 54 8-62 228-281 (292)
66 PF06800 Sugar_transport: Suga 65.6 15 0.00032 28.3 4.7 56 4-60 209-268 (269)
67 KOG4510 Permease of the drug/m 64.3 3.9 8.4E-05 32.3 1.3 36 26-62 133-168 (346)
68 PF07444 Ycf66_N: Ycf66 protei 61.6 12 0.00027 24.0 3.1 31 42-72 4-34 (84)
69 PF15102 TMEM154: TMEM154 prot 59.7 12 0.00025 26.6 3.0 43 48-90 66-112 (146)
70 KOG3912 Predicted integral mem 58.6 8.1 0.00018 30.7 2.2 56 8-64 104-159 (372)
71 PF08507 COPI_assoc: COPI asso 56.1 29 0.00062 23.4 4.4 33 26-60 70-102 (136)
72 PF01102 Glycophorin_A: Glycop 56.0 7.5 0.00016 26.6 1.5 14 58-71 83-96 (122)
73 KOG4314 Predicted carbohydrate 55.9 4 8.6E-05 31.0 0.1 61 4-65 67-127 (290)
74 KOG2766 Predicted membrane pro 55.3 0.75 1.6E-05 36.0 -3.9 53 11-64 99-151 (336)
75 KOG1581 UDP-galactose transpor 54.4 11 0.00025 29.8 2.4 62 6-68 99-160 (327)
76 PF14283 DUF4366: Domain of un 53.5 10 0.00022 28.3 1.9 26 49-74 165-190 (218)
77 PF04142 Nuc_sug_transp: Nucle 50.9 9.1 0.0002 28.5 1.4 45 8-53 199-243 (244)
78 KOG1583 UDP-N-acetylglucosamin 46.4 11 0.00024 29.7 1.3 46 28-74 103-148 (330)
79 PF02960 K1: K1 glycoprotein; 43.8 17 0.00037 24.9 1.7 30 43-72 74-103 (130)
80 PF04971 Lysis_S: Lysis protei 41.9 23 0.00049 22.0 1.9 33 42-74 32-65 (68)
81 KOG1623 Multitransmembrane pro 40.0 1.2E+02 0.0026 23.1 5.9 51 16-70 160-211 (243)
82 PF11346 DUF3149: Protein of u 37.6 38 0.00083 19.0 2.2 29 38-67 7-36 (42)
83 PF15471 TMEM171: Transmembran 36.3 50 0.0011 26.0 3.4 27 45-71 161-187 (319)
84 KOG4812 Golgi-associated prote 36.3 22 0.00048 27.3 1.5 68 1-71 171-252 (262)
85 PF05337 CSF-1: Macrophage col 35.5 12 0.00027 29.1 0.0 25 43-67 230-254 (285)
86 PF05545 FixQ: Cbb3-type cytoc 34.9 23 0.0005 19.8 1.1 17 51-67 18-34 (49)
87 TIGR00822 EII-Sor PTS system, 34.4 62 0.0014 24.8 3.7 19 19-37 197-215 (265)
88 KOG1580 UDP-galactose transpor 34.3 28 0.00061 27.2 1.8 44 20-64 114-158 (337)
89 PF02439 Adeno_E3_CR2: Adenovi 34.1 76 0.0017 17.5 3.0 24 48-71 13-36 (38)
90 KOG4831 Unnamed protein [Funct 33.9 21 0.00046 24.4 0.9 39 21-60 84-122 (125)
91 PF01102 Glycophorin_A: Glycop 33.8 51 0.0011 22.5 2.8 34 41-74 63-96 (122)
92 PF15361 RIC3: Resistance to i 33.8 34 0.00073 24.1 2.0 22 51-72 89-110 (152)
93 KOG4085 Uncharacterized conser 33.6 35 0.00076 24.5 2.0 50 43-92 118-171 (175)
94 PF10855 DUF2648: Protein of u 33.3 14 0.0003 19.8 -0.0 19 51-69 6-24 (33)
95 PF06365 CD34_antigen: CD34/Po 32.8 83 0.0018 23.3 4.0 22 46-67 105-128 (202)
96 COG4736 CcoQ Cbb3-type cytochr 32.8 32 0.0007 20.8 1.5 22 51-72 18-39 (60)
97 PF04657 DUF606: Protein of un 31.3 43 0.00093 22.8 2.1 26 34-59 112-137 (138)
98 PRK13871 conjugal transfer pro 30.9 1.9E+02 0.0041 20.2 5.4 66 22-90 53-125 (135)
99 cd01324 cbb3_Oxidase_CcoQ Cyto 30.3 42 0.00091 19.1 1.7 24 51-74 19-42 (48)
100 PF03083 MtN3_slv: Sugar efflu 29.7 45 0.00097 20.4 1.9 48 18-66 37-84 (87)
101 COG4975 GlcU Putative glucose 28.7 37 0.00081 26.5 1.6 42 23-65 242-287 (288)
102 PRK13499 rhamnose-proton sympo 28.4 1.2E+02 0.0026 24.1 4.5 42 25-66 109-156 (345)
103 PRK02237 hypothetical protein; 28.2 1.2E+02 0.0026 20.5 3.8 42 18-60 61-102 (109)
104 PF15061 DUF4538: Domain of un 27.7 65 0.0014 19.4 2.2 19 46-64 8-26 (58)
105 COG3296 Uncharacterized protei 27.5 78 0.0017 22.2 2.9 32 27-59 76-107 (143)
106 PRK13108 prolipoprotein diacyl 27.4 1.4E+02 0.003 24.7 4.8 24 43-66 254-277 (460)
107 PF02694 UPF0060: Uncharacteri 27.3 1.4E+02 0.003 20.1 4.0 42 18-60 59-100 (107)
108 PF06800 Sugar_transport: Suga 27.1 96 0.0021 23.9 3.6 51 12-67 72-126 (269)
109 PF12768 Rax2: Cortical protei 26.8 1.2E+02 0.0026 23.3 4.1 14 53-66 244-257 (281)
110 PF15330 SIT: SHP2-interacting 26.0 1.9E+02 0.0042 19.1 4.5 19 46-64 4-23 (107)
111 PF04342 DUF486: Protein of un 25.7 45 0.00098 22.5 1.4 28 30-58 76-103 (108)
112 PF12273 RCR: Chitin synthesis 25.2 88 0.0019 20.8 2.8 22 47-68 8-29 (130)
113 KOG2765 Predicted membrane pro 25.1 46 0.001 27.3 1.6 55 11-66 339-393 (416)
114 TIGR00910 2A0307_GadC glutamat 24.0 4E+02 0.0086 21.7 7.6 14 54-67 450-463 (507)
115 PF11023 DUF2614: Protein of u 22.6 2E+02 0.0043 19.6 4.1 43 28-71 23-67 (114)
116 KOG4782 Predicted membrane pro 22.2 41 0.0009 22.3 0.7 23 41-66 59-81 (108)
117 KOG2922 Uncharacterized conser 20.9 12 0.00025 29.9 -2.5 38 22-60 96-133 (335)
118 TIGR01167 LPXTG_anchor LPXTG-m 20.7 1.3E+02 0.0029 14.9 2.7 15 42-56 9-23 (34)
119 TIGR00803 nst UDP-galactose tr 20.6 1.4E+02 0.003 21.2 3.2 44 21-65 9-52 (222)
120 COG2271 UhpC Sugar phosphate p 20.0 1.5E+02 0.0032 24.7 3.5 68 17-89 160-227 (448)
No 1
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.76 E-value=1.4e-19 Score=140.12 Aligned_cols=71 Identities=38% Similarity=0.668 Sum_probs=67.9
Q ss_pred CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440 1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKE 72 (98)
Q Consensus 1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~ 72 (98)
|++|+++|+++++|||+||+|+|++|++++++.|+++|+ +|+|+.|++|++++++|+++|+++|.++++++
T Consensus 246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~-~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~ 316 (316)
T KOG1441|consen 246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFG-NPVTFLNALGYAIAILGVFLYSRAKLKEKKGK 316 (316)
T ss_pred HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeec-CCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 578999999999999999999999999999999999999 89999999999999999999999999888653
No 2
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.67 E-value=2.5e-17 Score=111.99 Aligned_cols=62 Identities=34% Similarity=0.690 Sum_probs=60.3
Q ss_pred CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHh
Q 045440 1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN 63 (98)
Q Consensus 1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~ 63 (98)
|++|+++|+++++|||+|++|+|++|+++++++|+++|| |++|..+++|++++++|.++|+|
T Consensus 92 ~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~-~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 92 FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFG-EPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcC-CcCCHHHHHHHHHHHHHHheeeC
Confidence 468999999999999999999999999999999999999 99999999999999999999986
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.36 E-value=5.2e-13 Score=103.51 Aligned_cols=64 Identities=25% Similarity=0.498 Sum_probs=61.6
Q ss_pred CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440 1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS 65 (98)
Q Consensus 1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k 65 (98)
|++|.++|++++++||+|++|.|++|.++++++|+++|| |++|+.+++|.+++++|.++|++.|
T Consensus 287 ~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~g-e~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 287 YLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQ-TQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhC-CCCchHhHHHHHHHHHHHHHHhhcC
Confidence 467999999999999999999999999999999999999 9999999999999999999999875
No 4
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=6.4e-13 Score=102.84 Aligned_cols=72 Identities=25% Similarity=0.519 Sum_probs=66.2
Q ss_pred CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCC
Q 045440 1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKER 73 (98)
Q Consensus 1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~ 73 (98)
|.+|+++|||...+||+|++++| +|+.+.+.+|++.++|.++++.+++|+.+.++|..+|++++.++++.+.
T Consensus 239 f~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 239 FGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred HHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 46899999999999999999999 9999999999998887899999999999999999999999988776543
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.23 E-value=7.6e-12 Score=94.03 Aligned_cols=69 Identities=26% Similarity=0.498 Sum_probs=63.7
Q ss_pred ehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440 3 TNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKE 72 (98)
Q Consensus 3 lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~ 72 (98)
.|.+.|.+++++||+|+++.+.+|.+..+++|++++| |++|..+++|.+++++|..+|++.|.++++.|
T Consensus 234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lg-e~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~~ 302 (302)
T TIGR00817 234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFG-TKISPQQVFGTGIAIAGVFLYSRVKAQKPKPK 302 (302)
T ss_pred HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcC-CCCchhHHHHHHHHHHHHHHHHHHhccCcCCC
Confidence 4677788999999999999999999999999999999 99999999999999999999999887766543
No 6
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.3e-12 Score=100.56 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=70.7
Q ss_pred CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCCCCCCC
Q 045440 1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKERRSSLP 78 (98)
Q Consensus 1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~~~~~~ 78 (98)
|.+|+.++|.|+.||||||+|.|.+|.+.+.++++.+++ |..+...|-|..+.+.|+.+|+++|-++.+++.+.++|
T Consensus 266 F~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~-E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~ 342 (347)
T KOG1442|consen 266 FAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYS-ETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSP 342 (347)
T ss_pred HHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHH-HHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCc
Confidence 678999999999999999999999999999999999999 99999999999999999999999998877766654444
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.93 E-value=1.8e-09 Score=81.80 Aligned_cols=65 Identities=22% Similarity=0.485 Sum_probs=61.0
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCC
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPG 69 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~ 69 (98)
+...|.+++++||+|.++++++|+++.+++|+++|| +++++.+++|+++.++|..+|++.|.|++
T Consensus 239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~-~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFG-HPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcC-CcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 455688899999999999999999999999999999 99999999999999999999999988764
No 8
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.86 E-value=1.7e-09 Score=84.17 Aligned_cols=62 Identities=21% Similarity=0.457 Sum_probs=58.6
Q ss_pred CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHh
Q 045440 1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN 63 (98)
Q Consensus 1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~ 63 (98)
|++-.++|.+..+||.+|.+++|++|++++++++.++.+ +.++..||.|..+++.|...|.+
T Consensus 254 F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~-d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 254 FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILK-DQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHHHHhcc
Confidence 456789999999999999999999999999999999999 99999999999999999999944
No 9
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.64 E-value=1.6e-08 Score=76.63 Aligned_cols=72 Identities=15% Similarity=0.451 Sum_probs=65.8
Q ss_pred CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCC
Q 045440 1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKER 73 (98)
Q Consensus 1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~ 73 (98)
|+..+|+-||+..||+.|++++|.+++.++.+.|.++|+ +|.+.+.+..+++.......|+++|.+++|.++
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffd-ap~nf~si~sillGflsg~iYavaks~k~q~q~ 306 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFD-APVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK 306 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345678899999999999999999999999999999999 999999999999999999999999987665443
No 10
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.40 E-value=4.1e-07 Score=70.41 Aligned_cols=68 Identities=18% Similarity=0.489 Sum_probs=61.2
Q ss_pred hhhHHhh-------cccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCC
Q 045440 5 LSQFICI-------GRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKER 73 (98)
Q Consensus 5 ~s~f~~i-------~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~ 73 (98)
+.+|.|+ .+||+||.+++=++|+.+.+++|++.|. ||+|+..|+|.++...|+++|+....+.++.|.
T Consensus 250 L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~-Npft~~h~lGa~lVF~Gt~~fa~~~~~~~~~k~ 324 (330)
T KOG1583|consen 250 LTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFE-NPFTPWHWLGAALVFFGTLLFANVWNHPKATKG 324 (330)
T ss_pred HHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEec-CCCCHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 4566666 7899999999999999999999999999 999999999999999999999999888774443
No 11
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.95 E-value=2.3e-05 Score=61.58 Aligned_cols=85 Identities=11% Similarity=0.214 Sum_probs=65.7
Q ss_pred hHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCCCCCCCCCCCcccC
Q 045440 7 QFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKERRSSLPTTRPQKHG 86 (98)
Q Consensus 7 ~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~~~~~~~~~~~~~~ 86 (98)
.++++++.+|...++...+--+..+++|++++| |++++.+++|.++.++|..+-++.|.+|.+++.. .-+ |.+
T Consensus 273 w~~~v~~~ga~~as~~~~L~PV~a~llg~l~Lg-E~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~---~~~---~~~ 345 (358)
T PLN00411 273 HSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN-DSLYLGCLIGGILITLGFYAVMWGKANEEKDQLL---SFS---GKE 345 (358)
T ss_pred HHHHHhccCchHHHHHHhHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhccc---Ccc---ccc
Confidence 456899999999999999999999999999999 9999999999999999999987655444333222 111 333
Q ss_pred CCCC-CCcCCCCC
Q 045440 87 NLGE-SNEHDGKV 98 (98)
Q Consensus 87 ~~~~-~~~~~~~~ 98 (98)
.+|. .+++||.|
T Consensus 346 ~~~~~~~~~~~~~ 358 (358)
T PLN00411 346 KTPLLLNGKNDQI 358 (358)
T ss_pred cchhhhhcccccC
Confidence 3454 66666654
No 12
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.83 E-value=3.8e-06 Score=60.75 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=52.9
Q ss_pred hhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440 5 LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY 61 (98)
Q Consensus 5 ~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y 61 (98)
++.++++++.++++.+++..++.++..++|+++|| ++++...++|..+.+.|.++|
T Consensus 167 ~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~-~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 167 LCIGGVVRYADNTTKSFVTALSIILSTLASVRLFD-AKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred ceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHeeeEeC
Confidence 45678899999999999999999999999999999 999999999999999998877
No 13
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.62 E-value=6.9e-05 Score=57.52 Aligned_cols=56 Identities=13% Similarity=0.282 Sum_probs=51.8
Q ss_pred hhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440 5 LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY 61 (98)
Q Consensus 5 ~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y 61 (98)
.+.|..+..-+|||.+|+-+.++...+++|+++|+ +|++.++|+|..+...|...-
T Consensus 256 ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~-npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 256 WFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFN-NPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHhhhH
Confidence 46788889999999999999999999999999999 999999999999999887654
No 14
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.39 E-value=0.00046 Score=51.96 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=54.7
Q ss_pred hHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcC
Q 045440 7 QFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTK 67 (98)
Q Consensus 7 ~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~ 67 (98)
.++.+++.+|...++...+--+..+++|++++| |++++.+++|.++.++|.+.++....+
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lg-E~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLG-ETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356789999999999999999999999999999 999999999999999999999865433
No 15
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.33 E-value=0.00025 Score=53.07 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=59.8
Q ss_pred ehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCC
Q 045440 3 TNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKP 68 (98)
Q Consensus 3 lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~ 68 (98)
-|...|......+|.|++|....|.+.+-++++++++ .+++..+|+++.+.++|..+........
T Consensus 30 qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~-r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 30 QNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLK-RRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHheeecCCccc
Confidence 3778899999999999999999999999999999999 9999999999999999999977765544
No 16
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.00014 Score=56.92 Aligned_cols=64 Identities=22% Similarity=0.391 Sum_probs=58.7
Q ss_pred hhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCC
Q 045440 5 LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPG 69 (98)
Q Consensus 5 ~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~ 69 (98)
+..|..|.+-.|+|++++-..|++..+.+|+++|| ++++..+++|+.+.+.|..+=.+.|.+++
T Consensus 256 ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~-h~~s~~q~~g~~iVFg~i~l~~~~k~~~~ 319 (327)
T KOG1581|consen 256 LFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFG-HPLSSEQWLGVLIVFGGIFLEILLKKKKN 319 (327)
T ss_pred heehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhC-CccchhhccCeeeehHHHHHHHHHHHhcc
Confidence 35688899999999999999999999999999999 99999999999999999998888887733
No 17
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.27 E-value=0.00069 Score=43.19 Aligned_cols=58 Identities=24% Similarity=0.531 Sum_probs=52.8
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
+.+.+..++++++-..++...+--+...++++++++ +++++.+++|+.+.+.|..+-+
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~-e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 68 YLLYFYALKYISASIVSILQYLSPVFAAILGWLFLG-ERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 445677789999999999999999999999999999 9999999999999999998754
No 18
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.15 E-value=0.00036 Score=54.76 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=53.8
Q ss_pred HhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCc
Q 045440 9 ICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGK 71 (98)
Q Consensus 9 ~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~ 71 (98)
.++..+||+.+++.-..-....+++++++|| .++++.-++|.++.++|.++|+....++.++
T Consensus 252 ~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~-~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 252 IVLRMSSATFFNLSLLTSDFYALIIDIFFFG-YKFSWLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred HHHHhCccceeehHHHHhhHHHHHHHHHhcC-ccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence 3578999999999777778888999999999 9999999999999999999999876544433
No 19
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.49 E-value=0.0045 Score=41.46 Aligned_cols=46 Identities=20% Similarity=0.597 Sum_probs=41.4
Q ss_pred cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
.+.|++..-+-.+.+.++|+++|+ |++++.+++|+.+.++|...-+
T Consensus 57 ~iAYavw~GlG~v~~~l~g~~~f~-e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 57 GIAYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 457888777888899999999999 9999999999999999999854
No 20
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.0057 Score=41.06 Aligned_cols=47 Identities=26% Similarity=0.490 Sum_probs=42.7
Q ss_pred cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHh
Q 045440 16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN 63 (98)
Q Consensus 16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~ 63 (98)
.+.|+|..-+=.+.+.+.|+++|+ |++++.+++|+.+.++|...-+.
T Consensus 57 gvAYAiW~GiG~v~~~l~g~~~f~-E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 57 GVAYAIWTGIGIVGTALVGVLLFG-ESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CcCCHHHHHHHHHHHHHHHHhhh
Confidence 467889999999999999999999 99999999999999999987543
No 21
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.42 E-value=0.0051 Score=40.92 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=42.0
Q ss_pred cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440 16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY 61 (98)
Q Consensus 16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y 61 (98)
.++|++..-+-.+.+.++|+++|+ |++++.+++|+.+.++|...-
T Consensus 56 gvaYAvW~GiG~v~~~lig~~~f~-e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 56 GTAYAVWTGIGAVGAAITGIVLLG-ESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999 999999999999999999874
No 22
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.40 E-value=0.0056 Score=46.12 Aligned_cols=60 Identities=8% Similarity=0.183 Sum_probs=52.1
Q ss_pred hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440 6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAST 66 (98)
Q Consensus 6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~ 66 (98)
+-+..+++.+|-+.++...+.-+..+++|++++| |++++.+++|+++.++|..+....-.
T Consensus 229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~-E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYG-EKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999999 99999999999999888776665543
No 23
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.34 E-value=0.0063 Score=40.82 Aligned_cols=45 Identities=24% Similarity=0.560 Sum_probs=41.3
Q ss_pred cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440 16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY 61 (98)
Q Consensus 16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y 61 (98)
.++|+|..-+-.+.+.++|+++|+ |++++.+++|+.+.+.|...-
T Consensus 62 gvAYAvW~GiG~v~~~~ig~~~f~-e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 62 SVAYALWGGFGIAATLAAGWILFG-QRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHh
Confidence 467889888999999999999999 999999999999999999863
No 24
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.33 E-value=0.0056 Score=40.69 Aligned_cols=43 Identities=12% Similarity=0.305 Sum_probs=37.1
Q ss_pred cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440 16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60 (98)
Q Consensus 16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~ 60 (98)
...|.+.. +--+.+.++|+++|| |++|+.+++|+++.++|..+
T Consensus 64 g~Ay~~~~-l~~v~~~~~~~l~f~-E~ls~~~~~Gi~lii~Gv~~ 106 (111)
T PRK15051 64 GIAYPMLS-LNFVWVTLAAVKLWH-EPVSPRHWCGVAFIIGGIVI 106 (111)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHH
Confidence 34555655 777889999999999 99999999999999999876
No 25
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.32 E-value=0.0076 Score=45.38 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=51.2
Q ss_pred hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
.-++.+++.+|...++...+.-+..+++|++++| |++++.+++|.++.+.|..+-.
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lg-E~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLS-TPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhHHHHh
Confidence 3457789999999999999999999999999999 9999999999999999986654
No 26
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=96.27 E-value=0.0068 Score=43.92 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=48.6
Q ss_pred hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHH
Q 045440 6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGM 58 (98)
Q Consensus 6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~ 58 (98)
.-+..+++.++.+.++...+.-+...++|++++| |++++.+++|..+.+.|.
T Consensus 208 ~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~-E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 208 LWNKGLTLVDPSAASILALAEPLVALLLGLLILG-ETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhc
Confidence 3566789999999999999999999999999999 999999999999999885
No 27
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.24 E-value=0.009 Score=45.02 Aligned_cols=59 Identities=15% Similarity=0.297 Sum_probs=53.4
Q ss_pred ehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 3 TNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 3 lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
.+.+-|+.++++++..-++....--+.+.++++++++ |+++..+++|++++++|..+-.
T Consensus 86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~-E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLG-ERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999999999999 9999999999999999987643
No 28
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.22 E-value=0.01 Score=40.45 Aligned_cols=45 Identities=20% Similarity=0.482 Sum_probs=40.7
Q ss_pred cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440 16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY 61 (98)
Q Consensus 16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y 61 (98)
.+.|++..-+-.+.+.++|+++|+ |++++.+++|+.+.++|.+.-
T Consensus 57 siAYavw~GiG~v~~~~ig~~~f~-E~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 57 GVAYALWEGIGILFITLFSVLLFD-ESLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHh
Confidence 467888777788899999999999 999999999999999999884
No 29
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.19 E-value=0.018 Score=37.68 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=48.1
Q ss_pred hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcC
Q 045440 6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTK 67 (98)
Q Consensus 6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~ 67 (98)
.-++..+.+++ ...+.-.+--+...++|+++|+ |+++..+++|++++++|.++=.+...+
T Consensus 51 ~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~-er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 51 LFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFK-ERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 33455566665 5557777888899999999999 999999999999999999886665443
No 30
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.17 E-value=0.014 Score=43.85 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=53.7
Q ss_pred hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440 6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAST 66 (98)
Q Consensus 6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~ 66 (98)
.-+..+++.++-+.++...+.-+...++|++++| |++|+.+++|.++.+.|.++-+..+.
T Consensus 229 l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~-E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 229 AYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGG-ETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456679999999999999999999999999999 99999999999999999998766433
No 31
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.14 E-value=0.0093 Score=43.66 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=50.5
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~ 60 (98)
+.+-|+.++++++-+-++....--+.+.++++++++ |+++..+++|++++++|..+
T Consensus 84 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~-Ek~~~~~~l~~~~~~~Gv~l 139 (256)
T TIGR00688 84 WWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLK-ERISRFQFIAVIIATLGVIS 139 (256)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 455677789999999999999999999999999999 99999999999999999874
No 32
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=96.12 E-value=0.0043 Score=48.73 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=60.2
Q ss_pred eehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440 2 GTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAST 66 (98)
Q Consensus 2 ~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~ 66 (98)
+.|++...+.+.-||.|-.+.-.++...+-++++..+. |.+...+++|.++.+.|+++|+-.-.
T Consensus 274 ffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~-E~f~llqilGFliLi~Gi~lY~~il~ 337 (372)
T KOG3912|consen 274 FFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGW-EYFHLLQILGFLILIMGIILYNQILF 337 (372)
T ss_pred eeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999 99999999999999999999987643
No 33
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.03 E-value=0.0061 Score=47.92 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=55.4
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS 65 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k 65 (98)
|+......++||..+.++....-...+.++|+++++ +++++.+++|++++++|..+=...-
T Consensus 93 N~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~-~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 93 NYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLK-RRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhhhheeeec
Confidence 677777889999999999999999999999999999 9999999999999999998754443
No 34
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=95.94 E-value=0.0087 Score=44.92 Aligned_cols=57 Identities=11% Similarity=0.275 Sum_probs=52.3
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY 61 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y 61 (98)
+...++.++++|+-..+++-..--+.+.++++++++ ++++..+++|++++++|..+-
T Consensus 79 ~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~-e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 79 HVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLG-QEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhhh
Confidence 456778889999999999999999999999999999 999999999999999999764
No 35
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=95.94 E-value=0.017 Score=43.57 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=49.2
Q ss_pred HhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440 9 ICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS 65 (98)
Q Consensus 9 ~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k 65 (98)
..+++..|.+.++...+-=+..+++|++++| |+++..+++|.++.++|..+=.+.+
T Consensus 234 ~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lg-E~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 234 TLLGRYETWRVAPLSLLVPVVGLASAALLLD-ERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHhcch
Confidence 4468889999999999999999999999999 9999999999999999997755443
No 36
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=95.92 E-value=0.014 Score=42.27 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=52.1
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
+.+.|..++++++-.-++.-...-+.+.++++++++ |++++.+++|++++++|..+..
T Consensus 61 ~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~-e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 61 YVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGK-ERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred HHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHhHHhhc
Confidence 456677889999888889988999999999999999 9999999999999999998865
No 37
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.83 E-value=0.015 Score=44.02 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=59.2
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKE 72 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~ 72 (98)
+.++.....+.|-=|+.+.=..|-+.+.++|+++++ .+.++.+++++++..+|.++++..+.++++..
T Consensus 78 ~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~-k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~ 145 (303)
T PF08449_consen 78 SVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILG-KRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS 145 (303)
T ss_pred HHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcC-ccccHHHHHHHHHHHhhHheeeeccccccccc
Confidence 345667778889999999999999999999999999 99999999999999999999998776555433
No 38
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=95.50 E-value=0.015 Score=45.71 Aligned_cols=59 Identities=19% Similarity=0.367 Sum_probs=52.6
Q ss_pred ehhhhHHhhcccCcchhhhhhhHhHHHHhhhhhee------eCCCccchhhHHhHHHHHHHHHHHH
Q 045440 3 TNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLF------FGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 3 lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~------fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
++...|+-++.|||..-++....-=+.+.++++++ ++ ++++..+++|++++++|..+=.
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~-er~~~~~~~G~~l~~~Gv~ll~ 155 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFK-ERSSVAKVMGTILSLIGALVVI 155 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhc-ccccHHHHHHHHHHHHHHHHHH
Confidence 34466777899999999999999999999999999 68 9999999999999999997644
No 39
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=95.40 E-value=0.023 Score=42.31 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=47.3
Q ss_pred hhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 5 LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 5 ~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
.+.+...+++++-.-++.....-+...++|+++++ |+++..+++|+.+++.|..+=.
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~-e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLG-ETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHh
Confidence 34455567777777777777788899999999999 9999999999999999997644
No 40
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=94.62 E-value=0.03 Score=41.72 Aligned_cols=53 Identities=19% Similarity=0.430 Sum_probs=44.6
Q ss_pred hHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440 7 QFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60 (98)
Q Consensus 7 ~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~ 60 (98)
-+..+++..+-..+....+--+..+++|++++| |+++..+++|.++.++|..+
T Consensus 228 ~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lg-E~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 228 VLWAMTRLPVATVVALRNTSIVFAVVLGIWFLN-ERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHhhCCceEEEeecccHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHhHHh
Confidence 345567777777777777777899999999999 99999999999999999875
No 41
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=94.56 E-value=0.12 Score=39.35 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=25.7
Q ss_pred cchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440 43 LNLHVVLGMIIAVFGMIWYSNASTKPGGKE 72 (98)
Q Consensus 43 ~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~ 72 (98)
-.+.|++|+++.++|..+|...|..+++.+
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~ 143 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIKSEEKEPK 143 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeecCCCCCcc
Confidence 457999999999999999999998875543
No 42
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.46 E-value=0.073 Score=42.27 Aligned_cols=58 Identities=17% Similarity=0.317 Sum_probs=54.3
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
|-..|.....-+|.|++|..++|...+-++++++.+ .+++..+|.-+++.++|..+=+
T Consensus 106 Nnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~-rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 106 NNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILR-RKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred hhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHh
Confidence 446788889999999999999999999999999999 9999999999999999999866
No 43
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=94.43 E-value=0.045 Score=42.56 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=49.4
Q ss_pred hhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 5 LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 5 ~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
...++.++.+|+-..+++-..--+.+.++++++++ ++++...++|+++.++|.++=.
T Consensus 129 ~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~-ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 129 FGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLK-QFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHhee
Confidence 34557778888888888888888899999999999 9999999999999999998743
No 44
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=94.43 E-value=0.1 Score=37.49 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=49.7
Q ss_pred hHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhh
Q 045440 7 QFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNA 64 (98)
Q Consensus 7 ~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~ 64 (98)
-+...++.++...+......-+..+++++++++ |+++..+++|.++.+.|..+....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~-e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLG-EPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHhcc
Confidence 345668888888888888888888889999999 999999999999999999998765
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=93.89 E-value=0.075 Score=36.36 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=27.9
Q ss_pred HHhhhhh--eeeCCCccchhhHHhHHHHHHHHHHHHh
Q 045440 29 LVLIMGF--LFFGKEGLNLHVVLGMIIAVFGMIWYSN 63 (98)
Q Consensus 29 ~~i~~s~--~~fg~~~~t~~~~~G~~i~l~G~~~Ys~ 63 (98)
.+.++++ ++|| |++|+.+++|+++.++|.++-+.
T Consensus 87 ~v~~~~~~~~~~~-E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 87 LVYLAAMLLPWFN-ETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHhcc
Confidence 3444555 4899 99999999999999999999653
No 46
>COG2510 Predicted membrane protein [Function unknown]
Probab=93.07 E-value=0.041 Score=38.52 Aligned_cols=32 Identities=34% Similarity=0.771 Sum_probs=29.4
Q ss_pred HHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440 28 ILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60 (98)
Q Consensus 28 i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~ 60 (98)
++.+++|++++| |++|..+++|+.+.++|..+
T Consensus 105 vl~~lls~lfL~-E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 105 VLAVLLSILFLG-ERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHHhCeee
Confidence 577899999999 99999999999999999765
No 47
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=92.91 E-value=0.31 Score=38.81 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=50.0
Q ss_pred HHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCC
Q 045440 8 FICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKP 68 (98)
Q Consensus 8 f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~ 68 (98)
-+++++.+-+...-+-.+-.++..++|+++|| -++|..=.+|..+.+..+.+|+....++
T Consensus 268 s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~-~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 268 SLVMKYADNILKGFSTSVAIILTTVASIALFD-FQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 34556666666666667778889999999999 9999999999999999999999666666
No 48
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.74 E-value=0.18 Score=39.68 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=49.6
Q ss_pred HhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440 9 ICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS 65 (98)
Q Consensus 9 ~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k 65 (98)
-+|+.-.|++...+-+.++.+++++|+++|. .|+|.+-.-|-++.+.|..+=-+.|
T Consensus 279 alI~~fGA~~aatvTTaRKavTi~lSfllFs-KPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 279 ALIKLFGALIAATVTTARKAVTILLSFLLFS-KPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHhchhHHHHHHHhHhHHHHHHHHHHHc-CchHHHHhhhhHHHHHHHHhhcccC
Confidence 4567788999999999999999999999999 9999999999999999998755555
No 49
>PRK11689 aromatic amino acid exporter; Provisional
Probab=92.66 E-value=0.15 Score=38.29 Aligned_cols=49 Identities=22% Similarity=0.479 Sum_probs=41.2
Q ss_pred ccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 13 RFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 13 ~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
.+++..-++....--+.+.++++++++ |+++..+++|++++++|..+-.
T Consensus 88 ~~~a~~a~~l~~~~Pi~~~ll~~~~~~-e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 88 RRQAIEVGMVNYLWPSLTILFAVLFNG-QKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred cccchHHHHHHHHhHHHHHHHHHHHhc-CCccHHHHHHHHHHHHhHhhee
Confidence 456666677777778888899999999 9999999999999999997643
No 50
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=92.44 E-value=0.29 Score=35.16 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=51.6
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhh-eeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGF-LFFGKEGLNLHVVLGMIIAVFGMIWYSNAST 66 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~-~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~ 66 (98)
+.+-|..++++++-..++....--+.+.++++ ++++ ++++..++.|+.+.+.|.++-.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 84 FLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLG-ERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHhHHheecCCC
Confidence 34556668889998888989888999999997 6668 99999999999999999988665443
No 51
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=92.13 E-value=0.2 Score=37.67 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=40.8
Q ss_pred HHhhccc-CcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 8 FICIGRF-TAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 8 f~~i~~T-SalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
|....++ ++-.-++.-..--+.+.++++++++ |+++..+++|++++++|..+-.
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~-e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFG-ERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHhHHHhc
Confidence 3344554 3333454555667888999999999 9999999999999999987654
No 52
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=92.11 E-value=0.11 Score=33.22 Aligned_cols=37 Identities=32% Similarity=0.596 Sum_probs=23.1
Q ss_pred cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHH
Q 045440 16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMII 53 (98)
Q Consensus 16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i 53 (98)
.+.|.+..-+-.+.+.++|+++|| |++|+.+++|+.+
T Consensus 56 ~vaYavw~g~g~v~~~~~~~~~f~-E~~s~~~~~gi~l 92 (93)
T PF00893_consen 56 SVAYAVWTGLGIVGVTLVGVFFFG-ESLSLSKWLGIGL 92 (93)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHhheee
Confidence 466777766778899999999999 9999999999976
No 53
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=91.01 E-value=0.37 Score=36.49 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=47.7
Q ss_pred Hhhc-ccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhH----HhHHHHHHHHHHHHh
Q 045440 9 ICIG-RFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVV----LGMIIAVFGMIWYSN 63 (98)
Q Consensus 9 ~~i~-~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~----~G~~i~l~G~~~Ys~ 63 (98)
.-.+ +..+-+.++...+--+..++.|+++++ |+.+++++ +|+++.+.|..+=..
T Consensus 230 ~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~-E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 230 FSAQPKVGVATSFSLSQLGVIISTLGGILILG-EKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHcccccchhhHHHHHHHHHHHHHHHHHHHhc-cCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 3335 788899999999999999999999999 99999999 999999999987544
No 54
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=90.33 E-value=0.077 Score=42.89 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=56.6
Q ss_pred ehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCC
Q 045440 3 TNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKP 68 (98)
Q Consensus 3 lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~ 68 (98)
-|++.=..+..||.-..+|+...-...++++|.++-+ |++|+.++++.++.++|+++-++.+.++
T Consensus 172 anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~-e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 172 ANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPV-ERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCc-chhhHHHHHHHHHhhccEEEEEeccccc
Confidence 4555556678999999999999999999999999998 9999999999999999999977765544
No 55
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=90.32 E-value=0.71 Score=34.59 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=40.9
Q ss_pred hHHhh-cccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 7 QFICI-GRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 7 ~f~~i-~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
.++.. ..+++-..++.-..--+.+.+++++ ++ |+++..+++|+.++++|.++-.
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~-e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FG-IRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hc-ccCchhHHHHHHHHHHhHHHHh
Confidence 34444 5566555666666677777788875 78 9999999999999999987753
No 56
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=90.15 E-value=0.25 Score=37.44 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=42.6
Q ss_pred hhhhHHhhcccCcchh-hhhhhHhHHHHhhhhheeeCCCccchhh----HHhHHHHHHHHHHHHhhh
Q 045440 4 NLSQFICIGRFTAVSF-QVLGHMKTILVLIMGFLFFGKEGLNLHV----VLGMIIAVFGMIWYSNAS 65 (98)
Q Consensus 4 N~s~f~~i~~TSalT~-sV~G~~K~i~~i~~s~~~fg~~~~t~~~----~~G~~i~l~G~~~Ys~~k 65 (98)
|++.|..+++++.-+- .+...+--+...+.|+++|+ |+.+.++ ++|++++++|.++....+
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~-e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFG-EWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 4555666665443222 12222444567789999999 9999999 999999999999976554
No 57
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=88.04 E-value=0.74 Score=35.92 Aligned_cols=54 Identities=15% Similarity=0.322 Sum_probs=44.0
Q ss_pred hhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440 18 SFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKE 72 (98)
Q Consensus 18 T~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~ 72 (98)
|..+...+--.++.++++++|| |+++..+++..+..-.|.++|+....++++++
T Consensus 239 ~~G~lqYi~Ptl~fllav~i~~-E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~ 292 (293)
T COG2962 239 TLGFLQYIEPTLMFLLAVLIFG-EPFDSDQLVTFAFIWLALALFSIDGLYTARKK 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444555688899999999 99999999999999999999999887665544
No 58
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=83.57 E-value=2.5 Score=30.28 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHHHHhhhcCCCCcCC-C-CCCCC-CCCcccCCC
Q 045440 48 VLGMIIAVFGMIWYSNASTKPGGKER-R-SSLPT-TRPQKHGNL 88 (98)
Q Consensus 48 ~~G~~i~l~G~~~Ys~~k~~~~~~~~-~-~~~~~-~~~~~~~~~ 88 (98)
++|+...++..++.-.+|.+++++|. + ..+.+ .++.++.+|
T Consensus 101 l~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~~~Em~pL 144 (163)
T PF06679_consen 101 LVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTRAENVEMAPL 144 (163)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccceeecccCCCcccceeccc
Confidence 45555555666666777777755553 3 54443 244444444
No 59
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=82.78 E-value=0.74 Score=31.12 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=36.1
Q ss_pred cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440 16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60 (98)
Q Consensus 16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~ 60 (98)
+++.-+++.+--+.+.+.|+++.. +..+...++|+.+.++|+.+
T Consensus 68 SlavPi~Nsl~fvfT~l~g~~lge-~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 68 SLAVPIANSLAFVFTALTGWLLGE-EVISRRTWLGMALILAGVAL 111 (113)
T ss_pred eeeehHHhHHHHHHHHHHHHHhcC-cccchhHHHHHHHHHcCeee
Confidence 344556677888899999988888 88899999999999999753
No 60
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=80.91 E-value=1.2 Score=34.92 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=40.2
Q ss_pred hhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 10 CIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 10 ~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
+++.+||..+++.-..-+.-.+++ ..|| .++.+.-++..+.+..|.++|+
T Consensus 249 l~k~~~aT~~nlslLTsDmwsl~i--~~Fg-Yhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 249 LIKTNSATMFNLSLLTSDMWSLLI--RTFG-YHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred heecCCceEEEhhHhHHHHHHHHH--HHHh-cchhhhhHHHHHHHHHhhEEee
Confidence 457888888887666555555554 7789 9999999999999999999993
No 61
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=75.51 E-value=6.8 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=19.9
Q ss_pred hhHHhHHHHHHHHHHHHhhhcCCCC
Q 045440 46 HVVLGMIIAVFGMIWYSNASTKPGG 70 (98)
Q Consensus 46 ~~~~G~~i~l~G~~~Ys~~k~~~~~ 70 (98)
.-.+++++++.|.++|.....+...
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 4578999999999999987655443
No 62
>PHA03049 IMV membrane protein; Provisional
Probab=72.79 E-value=8.2 Score=23.94 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=20.2
Q ss_pred hhhHHhHHHHHHHHHHHHhhhcCCCC
Q 045440 45 LHVVLGMIIAVFGMIWYSNASTKPGG 70 (98)
Q Consensus 45 ~~~~~G~~i~l~G~~~Ys~~k~~~~~ 70 (98)
-.-.+++++++.|.++|...+.+...
T Consensus 4 d~~l~iICVaIi~lIvYgiYnkk~~~ 29 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34578999999999999987655443
No 63
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=71.99 E-value=4.5 Score=31.62 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=38.8
Q ss_pred cccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 12 GRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 12 ~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
..-..+--+..=-++-...+++|+++++ |+++..+++-+.++.+|+..=.
T Consensus 94 n~g~~leaSLGY~InPL~~VllG~lflk-Erls~~Q~iAV~lA~~GV~~~~ 143 (293)
T COG2962 94 NNGHVLEASLGYFINPLVNVLLGRLFLK-ERLSRLQWIAVGLAAAGVLIQT 143 (293)
T ss_pred CCCchhHHHhHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHH
Confidence 3334444455455677889999999999 9999999999999999986533
No 64
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=71.95 E-value=3.3 Score=31.88 Aligned_cols=55 Identities=20% Similarity=0.437 Sum_probs=42.3
Q ss_pred hHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 7 QFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 7 ~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
+|...+...+.-.+=.|.+--+...+++.++.+ ++++...++|++++++|..+--
T Consensus 67 ~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~-e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 67 NFVALGFAPASLVAPLGALSLVFNAVLARFFLG-EKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhc-ccchHhHHhhHHHHHhhheeeE
Confidence 344444444444555677777888899999999 9999999999999999997643
No 65
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=69.30 E-value=11 Score=29.33 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=46.1
Q ss_pred HHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 8 FICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 8 f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
.....+-++=++++.-.+.-..--+.|+++.| +.+|+.+|+|+...+.++.--+
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~-e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLG-ETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhccc
Confidence 34557777888889888988999999999999 9999999999999998876533
No 66
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=65.57 E-value=15 Score=28.32 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=40.2
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhh----HHhHHHHHHHHHH
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHV----VLGMIIAVFGMIW 60 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~----~~G~~i~l~G~~~ 60 (98)
|++.++..++...-+-=..+++--++..+.|+++++ |+-+.++ ++|+++.++|..+
T Consensus 209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~-E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILK-EKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEE-ecCchhhHHHHHHHHHHHHHhhhc
Confidence 455555555555555556778888999999999999 7767654 5677777777653
No 67
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=64.34 E-value=3.9 Score=32.27 Aligned_cols=36 Identities=19% Similarity=0.504 Sum_probs=31.9
Q ss_pred hHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440 26 KTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 26 K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys 62 (98)
--+++++++|++.+ |+.|..+.+|.++++.|..+-.
T Consensus 133 sPvft~ifaw~~Lk-E~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 133 SPVFTIIFAWAFLK-EPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred ChHHHHHHHHHHHc-CCCcHHHHHHHHHhhheEEEEe
Confidence 35678899999999 9999999999999999997643
No 68
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=61.61 E-value=12 Score=24.00 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=25.3
Q ss_pred ccchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440 42 GLNLHVVLGMIIAVFGMIWYSNASTKPGGKE 72 (98)
Q Consensus 42 ~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~ 72 (98)
.+++..++|+.++++|..+|...+.+++-.+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~R 34 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPEVSR 34 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcchhh
Confidence 4678999999999999999987777665443
No 69
>PF15102 TMEM154: TMEM154 protein family
Probab=59.75 E-value=12 Score=26.56 Aligned_cols=43 Identities=16% Similarity=0.003 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHHHHHhhhcCCCCcCCC----CCCCCCCCcccCCCCC
Q 045440 48 VLGMIIAVFGMIWYSNASTKPGGKERR----SSLPTTRPQKHGNLGE 90 (98)
Q Consensus 48 ~~G~~i~l~G~~~Ys~~k~~~~~~~~~----~~~~~~~~~~~~~~~~ 90 (98)
+++.++.+..++++.+.|.++.+++.+ +..++....++|.++.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~~~ss~gsq~~~qt~e~~~Env~~ 112 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQEPSSQGSQSALQTYELGSENVKV 112 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCCCCccccccccccccccCcccccc
Confidence 666677777788877776555544332 2222444455555544
No 70
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=58.61 E-value=8.1 Score=30.74 Aligned_cols=56 Identities=20% Similarity=0.371 Sum_probs=45.5
Q ss_pred HHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhh
Q 045440 8 FICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNA 64 (98)
Q Consensus 8 f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~ 64 (98)
|.-+..|||-.+++.--.-.|.+-++|..+.+ ..++..+|+|+...++|...-.+.
T Consensus 104 ~vgL~lTsASsfQMlRGaviIFvglfst~~Ln-~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 104 YVGLNLTSASSFQMLRGAVIIFVGLFSTMFLN-RTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHHHhhHHHHHHhhcchhhhhHHHHHHHHh-cccchhhHHHHHHHHhhhheeeee
Confidence 33457799999998766667777788888999 999999999999999998764443
No 71
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=56.14 E-value=29 Score=23.43 Aligned_cols=33 Identities=21% Similarity=0.693 Sum_probs=23.2
Q ss_pred hHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440 26 KTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60 (98)
Q Consensus 26 K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~ 60 (98)
|.+..+++|.+.++ . -....+.|..+.+.|.+.
T Consensus 70 RGlfyif~G~l~~~-~-~~~~~i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 70 RGLFYIFLGTLCLG-Q-SILSIIIGLLLFLVGVIY 102 (136)
T ss_pred HHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHHHHH
Confidence 56778888888888 5 334556777777777643
No 72
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=55.98 E-value=7.5 Score=26.60 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=6.1
Q ss_pred HHHHHhhhcCCCCc
Q 045440 58 MIWYSNASTKPGGK 71 (98)
Q Consensus 58 ~~~Ys~~k~~~~~~ 71 (98)
.++|...|+++|..
T Consensus 83 li~y~irR~~Kk~~ 96 (122)
T PF01102_consen 83 LISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHS----
T ss_pred HHHHHHHHHhccCC
Confidence 35566666666643
No 73
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=55.87 E-value=4 Score=31.05 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=47.5
Q ss_pred hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440 4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS 65 (98)
Q Consensus 4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k 65 (98)
|+--.+.+++.||--.+-+-.-+...+.+++|++.| |++...+++...+++.|..+-+|+.
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~-D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLG-DRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhc-cchhhhhHHHHHHHhCcEEEEEecc
Confidence 444455667778777776777778888899999999 9998888888888888887766543
No 74
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=55.33 E-value=0.75 Score=35.98 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=46.7
Q ss_pred hcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhh
Q 045440 11 IGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNA 64 (98)
Q Consensus 11 i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~ 64 (98)
-++||-++.+..-+--..++.+++|++.+ .+..++++.|++++++|..+--..
T Consensus 99 yQyTsmtSi~lLDcwaip~v~~lsw~fLk-trYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 99 YQYTSMTSIMLLDCWAIPCVLVLSWFFLK-TRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred hhhcchHHHHHHHHhhhHHHHHHHHHHHH-HHHhhheeeeEEeEecceEEEEEe
Confidence 37788888888888899999999999999 999999999999999999774443
No 75
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=54.45 E-value=11 Score=29.82 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=55.9
Q ss_pred hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCC
Q 045440 6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKP 68 (98)
Q Consensus 6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~ 68 (98)
++|-.+++.|=-|..++=.-|-+++.+.|.++++ .+.+...++-.++.-+|..++...+..+
T Consensus 99 ~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~-~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 99 CGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYG-RKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhc-CccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 4566678889999999999999999999999999 9999999999999999999998886655
No 76
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=53.54 E-value=10 Score=28.32 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHHhhhcCCCCcCCC
Q 045440 49 LGMIIAVFGMIWYSNASTKPGGKERR 74 (98)
Q Consensus 49 ~G~~i~l~G~~~Ys~~k~~~~~~~~~ 74 (98)
+.++++++|+..|-|+|+++++++..
T Consensus 165 ~lllv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 165 LLLLVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHHHHhhcceEEEEEEeccccccc
Confidence 33455566667888888877766655
No 77
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=50.90 E-value=9.1 Score=28.53 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=39.3
Q ss_pred HHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHH
Q 045440 8 FICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMII 53 (98)
Q Consensus 8 f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i 53 (98)
-+++++.+.+.-..+..+-.++..++++++|| .++|..-++|..+
T Consensus 199 a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~-~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 199 AFVLKYADNIVKGFATAVSIVLTAVLSVLLFG-FPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHhhheec
Confidence 35678889999999999999999999999999 9999998888754
No 78
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=46.40 E-value=11 Score=29.73 Aligned_cols=46 Identities=20% Similarity=0.427 Sum_probs=39.6
Q ss_pred HHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCCC
Q 045440 28 ILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKERR 74 (98)
Q Consensus 28 i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~~ 74 (98)
+....+||++.| .+.+..++..+++..+|.++-+..+.++-+.+..
T Consensus 103 l~nM~~g~il~~-k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~ 148 (330)
T KOG1583|consen 103 LANMILGWILLG-KRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLS 148 (330)
T ss_pred HHHHHHHHHhcc-ceeehhhhhhHHhhhhhheeEEeecCcchhhhhc
Confidence 345578899999 9999999999999999999999998888777544
No 79
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=43.76 E-value=17 Score=24.91 Aligned_cols=30 Identities=13% Similarity=0.473 Sum_probs=23.3
Q ss_pred cchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440 43 LNLHVVLGMIIAVFGMIWYSNASTKPGGKE 72 (98)
Q Consensus 43 ~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~ 72 (98)
+|....+|..-.++|+++++++..+....|
T Consensus 74 mTlVaLIgTMCgILgTiIfahcqkq~dSnk 103 (130)
T PF02960_consen 74 MTLVALIGTMCGILGTIIFAHCQKQRDSNK 103 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 467788999999999999999865544333
No 80
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=41.93 E-value=23 Score=22.03 Aligned_cols=33 Identities=9% Similarity=0.080 Sum_probs=21.7
Q ss_pred ccchhhHHh-HHHHHHHHHHHHhhhcCCCCcCCC
Q 045440 42 GLNLHVVLG-MIIAVFGMIWYSNASTKPGGKERR 74 (98)
Q Consensus 42 ~~t~~~~~G-~~i~l~G~~~Ys~~k~~~~~~~~~ 74 (98)
+..+..++| +++++++.+.=-|+|.++.+++++
T Consensus 32 qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 32 QWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred cchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHhh
Confidence 344444444 777888887777788877766554
No 81
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=39.99 E-value=1.2e+02 Score=23.14 Aligned_cols=51 Identities=16% Similarity=0.284 Sum_probs=35.8
Q ss_pred cchhhhhhhHhHHHHhhhhheeeCCCccc-hhhHHhHHHHHHHHHHHHhhhcCCCC
Q 045440 16 AVSFQVLGHMKTILVLIMGFLFFGKEGLN-LHVVLGMIIAVFGMIWYSNASTKPGG 70 (98)
Q Consensus 16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t-~~~~~G~~i~l~G~~~Ys~~k~~~~~ 70 (98)
|...++++.+-...-.+-|.++ + |.+= ..|.+|..+.++=..+| .|..+++
T Consensus 160 Pf~Ls~a~fl~a~~W~lYGlli-~-D~~IaipN~iG~~l~~~QL~Ly--~~y~~~~ 211 (243)
T KOG1623|consen 160 PFPLSFALFLVAVQWLLYGLLI-K-DFFIAIPNVLGFLLGLIQLILY--FKYPKTT 211 (243)
T ss_pred chHHHHHHHHHHHHHHHHHHHh-c-CeEEEcccHHHHHHHHHHHHHh--hhcCCCc
Confidence 4455666666666666777777 5 5544 68999999999999999 4444443
No 82
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=37.57 E-value=38 Score=18.98 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=17.6
Q ss_pred eCCCccchhhHHhHHHHHH-HHHHHHhhhcC
Q 045440 38 FGKEGLNLHVVLGMIIAVF-GMIWYSNASTK 67 (98)
Q Consensus 38 fg~~~~t~~~~~G~~i~l~-G~~~Ys~~k~~ 67 (98)
|+ +++.....+.++.++. |.+++.++..+
T Consensus 7 F~-s~vGL~Sl~vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 7 FG-SDVGLMSLIVIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred hc-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 7888877777766553 44444444433
No 83
>PF15471 TMEM171: Transmembrane protein family 171
Probab=36.32 E-value=50 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=21.8
Q ss_pred hhhHHhHHHHHHHHHHHHhhhcCCCCc
Q 045440 45 LHVVLGMIIAVFGMIWYSNASTKPGGK 71 (98)
Q Consensus 45 ~~~~~G~~i~l~G~~~Ys~~k~~~~~~ 71 (98)
.++++|=+|.++|.+++-.+-.|+++.
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr~n 187 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKRNN 187 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeeccC
Confidence 467999999999999998876665543
No 84
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=36.31 E-value=22 Score=27.34 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=36.7
Q ss_pred CeehhhhHHhhcccCcchhhhhhhHhHH---HHhhhhhee---eCC---CccchhhHHhHHHHHHHHH-----HHHhhhc
Q 045440 1 VGTNLSQFICIGRFTAVSFQVLGHMKTI---LVLIMGFLF---FGK---EGLNLHVVLGMIIAVFGMI-----WYSNAST 66 (98)
Q Consensus 1 f~lN~s~f~~i~~TSalT~sV~G~~K~i---~~i~~s~~~---fg~---~~~t~~~~~G~~i~l~G~~-----~Ys~~k~ 66 (98)
|+.|+..|++... +|++++|.--.+ .+.++.|++ |.+ ..++.+.|++.+++++|.+ +|+|.|.
T Consensus 171 flFnwIGFlltyc---l~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr~~i~YikV 247 (262)
T KOG4812|consen 171 FLFNWIGFLLTYC---LTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLRGFINYIKV 247 (262)
T ss_pred HHHHHHHHHHHHH---HHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3457777776543 445555443332 333334443 221 2345567777777777775 4667776
Q ss_pred CCCCc
Q 045440 67 KPGGK 71 (98)
Q Consensus 67 ~~~~~ 71 (98)
|+..+
T Consensus 248 rrm~~ 252 (262)
T KOG4812|consen 248 RRMEE 252 (262)
T ss_pred hhHHH
Confidence 65543
No 85
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=35.49 E-value=12 Score=29.11 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=0.0
Q ss_pred cchhhHHhHHHHHHHHHHHHhhhcC
Q 045440 43 LNLHVVLGMIIAVFGMIWYSNASTK 67 (98)
Q Consensus 43 ~t~~~~~G~~i~l~G~~~Ys~~k~~ 67 (98)
+..-.++.+++++.|..||-+-+..
T Consensus 230 lLVPSiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 230 LLVPSIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp -------------------------
T ss_pred ccccchhhhhhhccceeeecccccc
Confidence 4567789999999999999886543
No 86
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.86 E-value=23 Score=19.85 Aligned_cols=17 Identities=6% Similarity=0.376 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhhcC
Q 045440 51 MIIAVFGMIWYSNASTK 67 (98)
Q Consensus 51 ~~i~l~G~~~Ys~~k~~ 67 (98)
..+.++|.++|.+-+.+
T Consensus 18 ~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHcccc
Confidence 44556677888885544
No 87
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=34.40 E-value=62 Score=24.82 Aligned_cols=19 Identities=21% Similarity=0.495 Sum_probs=10.6
Q ss_pred hhhhhhHhHHHHhhhhhee
Q 045440 19 FQVLGHMKTILVLIMGFLF 37 (98)
Q Consensus 19 ~sV~G~~K~i~~i~~s~~~ 37 (98)
.++...=|.+.-.++|++.
T Consensus 197 l~~m~~k~~~~ff~lGF~l 215 (265)
T TIGR00822 197 LRMMFKAYLMPFFYLGFLF 215 (265)
T ss_pred HHHHhhcchHHHHHHHHHH
Confidence 3444555555666666654
No 88
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=34.32 E-value=28 Score=27.18 Aligned_cols=44 Identities=30% Similarity=0.472 Sum_probs=38.1
Q ss_pred hhhh-hHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhh
Q 045440 20 QVLG-HMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNA 64 (98)
Q Consensus 20 sV~G-~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~ 64 (98)
+|+| .-|-|.+.++|+++-+ ....+.++.-+++.++|.+++-|-
T Consensus 114 qVlgKScKPIPVMilGVl~~~-KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 114 QVLGKSCKPIPVMILGVLFAH-KSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred HHhcccCCCcceeeeehhhhc-ccccHHHHHHHHHHHHHHHHhhcc
Confidence 4444 5688999999999999 999999999999999999887764
No 89
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=34.11 E-value=76 Score=17.51 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHHhhhcCCCCc
Q 045440 48 VLGMIIAVFGMIWYSNASTKPGGK 71 (98)
Q Consensus 48 ~~G~~i~l~G~~~Ys~~k~~~~~~ 71 (98)
.+|+++.+.-.+.|.-...|.+.+
T Consensus 13 ~vg~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 13 VVGMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHcccccc
Confidence 568888888889988876665533
No 90
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=33.88 E-value=21 Score=24.36 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=23.8
Q ss_pred hhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440 21 VLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60 (98)
Q Consensus 21 V~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~ 60 (98)
|.+.+--+.....|...-. +.-...-++|..+.++|..+
T Consensus 84 v~nsltfafta~~G~~LGE-~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 84 VTNSLTFAFTAIFGKALGE-ETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred ecchhHHHHHHHHHHHhcc-ccccceeehhhhHHhhhhhh
Confidence 3444444445555554433 44556778899999988765
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.85 E-value=51 Score=22.49 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=22.8
Q ss_pred CccchhhHHhHHHHHHHHHHHHhhhcCCCCcCCC
Q 045440 41 EGLNLHVVLGMIIAVFGMIWYSNASTKPGGKERR 74 (98)
Q Consensus 41 ~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~~ 74 (98)
.+....=++|++..++|.++.=.+-.+..++|..
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3444555778888888889988888888888877
No 92
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=33.76 E-value=34 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCcC
Q 045440 51 MIIAVFGMIWYSNASTKPGGKE 72 (98)
Q Consensus 51 ~~i~l~G~~~Ys~~k~~~~~~~ 72 (98)
|.|.++-+++|...|...++..
T Consensus 89 YtiGI~~f~lY~l~Ki~~~k~~ 110 (152)
T PF15361_consen 89 YTIGIVLFILYTLFKIKKKKDS 110 (152)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc
Confidence 5677777899999998755443
No 93
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.64 E-value=35 Score=24.48 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=35.2
Q ss_pred cchhhHHhHHHHHHHHHHHHhhhcCCCCcCCC---CCCC-CCCCcccCCCCCCC
Q 045440 43 LNLHVVLGMIIAVFGMIWYSNASTKPGGKERR---SSLP-TTRPQKHGNLGESN 92 (98)
Q Consensus 43 ~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~~---~~~~-~~~~~~~~~~~~~~ 92 (98)
++...++|-.+...-..+|...-+-+|..... ...| ++++.|-|.++++-
T Consensus 118 ~~L~tllGsg~iFatGV~YG~mALGKKadr~~maaa~dpa~sqq~~q~~l~~~~ 171 (175)
T KOG4085|consen 118 LTLTTLLGSGIIFATGVLYGLMALGKKADRISMAAAQDPAQSQQADQEKLAETL 171 (175)
T ss_pred hhHHHHhCcchhhhhHHHHHHHHhcccccHHHHHHhcCcccCcccchhhCcccc
Confidence 46677888888888899999988766665543 2344 66666777777643
No 94
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=33.26 E-value=14 Score=19.80 Aligned_cols=19 Identities=16% Similarity=0.280 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhcCCC
Q 045440 51 MIIAVFGMIWYSNASTKPG 69 (98)
Q Consensus 51 ~~i~l~G~~~Ys~~k~~~~ 69 (98)
+++++.|..+|.+-|++++
T Consensus 6 i~L~l~ga~f~~fKKyQ~~ 24 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNH 24 (33)
T ss_pred ehhhhhhHHHHHHHHHHHH
Confidence 5688899999999888744
No 95
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=32.83 E-value=83 Score=23.34 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=14.8
Q ss_pred hhHHh--HHHHHHHHHHHHhhhcC
Q 045440 46 HVVLG--MIIAVFGMIWYSNASTK 67 (98)
Q Consensus 46 ~~~~G--~~i~l~G~~~Ys~~k~~ 67 (98)
.-.+| ++++++|...|...+.|
T Consensus 105 lv~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 105 LVTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred hHHhhHHHHHHHHHHHHHHhhhhc
Confidence 44677 78888888776655443
No 96
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.83 E-value=32 Score=20.75 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCcC
Q 045440 51 MIIAVFGMIWYSNASTKPGGKE 72 (98)
Q Consensus 51 ~~i~l~G~~~Ys~~k~~~~~~~ 72 (98)
+.+.+.|.++|.+-+.++++..
T Consensus 18 ~~l~fiavi~~ayr~~~K~~~d 39 (60)
T COG4736 18 FTLFFIAVIYFAYRPGKKGEFD 39 (60)
T ss_pred HHHHHHHHHHHHhcccchhhHH
Confidence 4455666677776555444433
No 97
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=31.29 E-value=43 Score=22.82 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=20.1
Q ss_pred hheeeCCCccchhhHHhHHHHHHHHH
Q 045440 34 GFLFFGKEGLNLHVVLGMIIAVFGMI 59 (98)
Q Consensus 34 s~~~fg~~~~t~~~~~G~~i~l~G~~ 59 (98)
|++=..+.++++.+++|+.+.++|..
T Consensus 112 G~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 112 GLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 33333336899999999999999976
No 98
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=30.86 E-value=1.9e+02 Score=20.23 Aligned_cols=66 Identities=17% Similarity=0.033 Sum_probs=29.8
Q ss_pred hhhHhHHHHhhhh-heeeCCCccchh--h----HHhHHHHHHHHHHHHhhhcCCCCcCCCCCCCCCCCcccCCCCC
Q 045440 22 LGHMKTILVLIMG-FLFFGKEGLNLH--V----VLGMIIAVFGMIWYSNASTKPGGKERRSSLPTTRPQKHGNLGE 90 (98)
Q Consensus 22 ~G~~K~i~~i~~s-~~~fg~~~~t~~--~----~~G~~i~l~G~~~Ys~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (98)
...+-.+.+++.| .+.|| +.++.. + ++|+.+.+....+.+..-.+-..-. -...+.++...||-+.
T Consensus 53 A~~IavIaIivaG~~liFG-g~~~gf~Rrl~~vVlg~~il~gAt~i~~lFg~~GA~i~--~~~~~~~~~~~~~~~~ 125 (135)
T PRK13871 53 AGFIALAAVAIAGAMLIFG-GELNDFARRLCYVALVGGVLLGATQIVALFGATGASIG--ELEARAGPGIYEPSMT 125 (135)
T ss_pred HHHHHHHHHHHHHHHHHhC-cchhHHHHHHHHHHHHHHHHHhhHHHHHHHcccccccc--Cchhhccccccccccc
Confidence 3333344444444 45588 554432 2 4455555555555555544311111 1122445555665554
No 99
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=30.28 E-value=42 Score=19.11 Aligned_cols=24 Identities=4% Similarity=0.207 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCcCCC
Q 045440 51 MIIAVFGMIWYSNASTKPGGKERR 74 (98)
Q Consensus 51 ~~i~l~G~~~Ys~~k~~~~~~~~~ 74 (98)
+.+..+|.++|.+-+.+++.-+++
T Consensus 19 ~~~~Figiv~wa~~p~~k~~f~ea 42 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKKAFDEA 42 (48)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHH
Confidence 467888999999976655544433
No 100
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=29.69 E-value=45 Score=20.38 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=35.0
Q ss_pred hhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440 18 SFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAST 66 (98)
Q Consensus 18 T~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~ 66 (98)
...+.+.+..++-+.-|++.-+ .++-..|.+|+.+.+.=...|-....
T Consensus 37 ~~~~~~~~~~~~W~~YG~l~~d-~~i~~~N~~g~~~~~~~~~~~~~y~~ 84 (87)
T PF03083_consen 37 PPFLAMFFNCVLWLIYGILIND-WPIIVPNVFGLVLSIIYLVVYYIYPS 84 (87)
T ss_pred ehhHHHhhhccHhhhhhhhcCC-eeEEeeHHHHHHHHHHHHhheEEeCC
Confidence 3445667777777788888766 78888999999888877776655433
No 101
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=28.74 E-value=37 Score=26.45 Aligned_cols=42 Identities=31% Similarity=0.531 Sum_probs=31.6
Q ss_pred hhHhHHHHhhhhheeeCCCccchhh----HHhHHHHHHHHHHHHhhh
Q 045440 23 GHMKTILVLIMGFLFFGKEGLNLHV----VLGMIIAVFGMIWYSNAS 65 (98)
Q Consensus 23 G~~K~i~~i~~s~~~fg~~~~t~~~----~~G~~i~l~G~~~Ys~~k 65 (98)
.++-.++.++.|.++++ ++-|.++ ++|+.+.+.|..+-..+|
T Consensus 242 SQlgViisTiGGIl~L~-ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 242 SQLGVIISTIGGILFLG-EKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred hhheeeeeecceEEEEe-ccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 34455677889999999 8888766 567888888887766554
No 102
>PRK13499 rhamnose-proton symporter; Provisional
Probab=28.44 E-value=1.2e+02 Score=24.10 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=28.5
Q ss_pred HhHHHHhhhhheeeCC------CccchhhHHhHHHHHHHHHHHHhhhc
Q 045440 25 MKTILVLIMGFLFFGK------EGLNLHVVLGMIIAVFGMIWYSNAST 66 (98)
Q Consensus 25 ~K~i~~i~~s~~~fg~------~~~t~~~~~G~~i~l~G~~~Ys~~k~ 66 (98)
+--+.-++++.++||+ .+-.....+|+++.++|..+=+++-.
T Consensus 109 l~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 109 ITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344556667777772 12234578999999999999888643
No 103
>PRK02237 hypothetical protein; Provisional
Probab=28.25 E-value=1.2e+02 Score=20.49 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=33.4
Q ss_pred hhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440 18 SFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60 (98)
Q Consensus 18 T~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~ 60 (98)
+|+.-|-+=.+..++-++.+-| .+.+.--++|.+++++|...
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg-~~Pd~~D~iGa~v~L~G~~i 102 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDG-VRPDRWDWIGAAICLVGMAV 102 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-cCCChhHHHhHHHHHHhHHH
Confidence 4555566666667777888888 89999999999999999854
No 104
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=27.70 E-value=65 Score=19.38 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=16.3
Q ss_pred hhHHhHHHHHHHHHHHHhh
Q 045440 46 HVVLGMIIAVFGMIWYSNA 64 (98)
Q Consensus 46 ~~~~G~~i~l~G~~~Ys~~ 64 (98)
.-++|-+++++|.++|...
T Consensus 8 ~~~~ggfVg~iG~a~Ypi~ 26 (58)
T PF15061_consen 8 ALFVGGFVGLIGAALYPIY 26 (58)
T ss_pred hhhHHHHHHHHHHHHhhhh
Confidence 4578999999999999875
No 105
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.47 E-value=78 Score=22.23 Aligned_cols=32 Identities=9% Similarity=0.622 Sum_probs=26.7
Q ss_pred HHHHhhhhheeeCCCccchhhHHhHHHHHHHHH
Q 045440 27 TILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMI 59 (98)
Q Consensus 27 ~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~ 59 (98)
..++++.|+++-+ ...+..+.+|..+++.|.+
T Consensus 76 s~vLil~g~~la~-t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 76 SFVLILAGVFLAA-TDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHH
Confidence 4567778888888 8888999999999988887
No 106
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=27.42 E-value=1.4e+02 Score=24.73 Aligned_cols=24 Identities=4% Similarity=0.156 Sum_probs=19.3
Q ss_pred cchhhHHhHHHHHHHHHHHHhhhc
Q 045440 43 LNLHVVLGMIIAVFGMIWYSNAST 66 (98)
Q Consensus 43 ~t~~~~~G~~i~l~G~~~Ys~~k~ 66 (98)
++..|++++.+.++|.+++-+.+.
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 688899999999999877765543
No 107
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=27.33 E-value=1.4e+02 Score=20.09 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=33.1
Q ss_pred hhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440 18 SFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60 (98)
Q Consensus 18 T~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~ 60 (98)
+|+.-|-+=.+..++-++.+-| .+.+.--++|..++++|...
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg-~~Pd~~D~iGa~i~L~G~~i 100 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDG-VRPDRWDWIGAAICLVGVAI 100 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcC-cCCChHHHHhHHHHHHhHHh
Confidence 3455555666677777888888 88999999999999999865
No 108
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=27.08 E-value=96 Score=23.87 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=32.0
Q ss_pred cccCcchhhhhhhHhHHHHhhhhheeeCCCccch----hhHHhHHHHHHHHHHHHhhhcC
Q 045440 12 GRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNL----HVVLGMIIAVFGMIWYSNASTK 67 (98)
Q Consensus 12 ~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~----~~~~G~~i~l~G~~~Ys~~k~~ 67 (98)
++|-|++... --+...+.|+++|| |--+. ..++++++.++|..+=++.+.+
T Consensus 72 S~tmPiStg~----QLvg~sl~gv~~fg-EW~~~~~~~~G~~Al~liiiGv~lts~~~~~ 126 (269)
T PF06800_consen 72 SKTMPISTGL----QLVGTSLIGVLFFG-EWTTTTQKIIGFLALVLIIIGVILTSYQDKK 126 (269)
T ss_pred eeeeccchhH----HHHHHHHHHHhhcC-CCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 4555554332 33556789999999 64443 3456778888888775554433
No 109
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.78 E-value=1.2e+02 Score=23.30 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhc
Q 045440 53 IAVFGMIWYSNAST 66 (98)
Q Consensus 53 i~l~G~~~Ys~~k~ 66 (98)
|.++|++++-..|.
T Consensus 244 l~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 244 LVLIGIILAYIRRR 257 (281)
T ss_pred HHHHHHHHHHHHhh
Confidence 44556666544444
No 110
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=26.05 E-value=1.9e+02 Score=19.11 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=9.2
Q ss_pred hhHHhHHHHH-HHHHHHHhh
Q 045440 46 HVVLGMIIAV-FGMIWYSNA 64 (98)
Q Consensus 46 ~~~~G~~i~l-~G~~~Ys~~ 64 (98)
..++|+++.+ ++.-+..|.
T Consensus 4 l~il~llLll~l~asl~~wr 23 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWR 23 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3456666444 344444443
No 111
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=25.70 E-value=45 Score=22.47 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=22.2
Q ss_pred HhhhhheeeCCCccchhhHHhHHHHHHHH
Q 045440 30 VLIMGFLFFGKEGLNLHVVLGMIIAVFGM 58 (98)
Q Consensus 30 ~i~~s~~~fg~~~~t~~~~~G~~i~l~G~ 58 (98)
-..+++++.+ +++++....|.+..+.+.
T Consensus 76 F~~Fsv~~l~-E~l~~n~l~af~~i~~av 103 (108)
T PF04342_consen 76 FAPFSVFYLG-EPLKWNYLWAFLCILGAV 103 (108)
T ss_pred eHHHHHHHhC-CCccHHHHHHHHHHHHhh
Confidence 3457888899 999999999887776654
No 112
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.25 E-value=88 Score=20.84 Aligned_cols=22 Identities=5% Similarity=0.280 Sum_probs=11.3
Q ss_pred hHHhHHHHHHHHHHHHhhhcCC
Q 045440 47 VVLGMIIAVFGMIWYSNASTKP 68 (98)
Q Consensus 47 ~~~G~~i~l~G~~~Ys~~k~~~ 68 (98)
-++.++|.++++++.+.-|.++
T Consensus 8 ii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 8 IIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555544443
No 113
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=25.09 E-value=46 Score=27.29 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=44.3
Q ss_pred hcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440 11 IGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAST 66 (98)
Q Consensus 11 i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~ 66 (98)
..-||||+.++.-.+-.-+..+.=+++-| .+.|+..++|....++|++.-++.-.
T Consensus 339 ~~lTs~Lv~TlgmSltIPLA~~aD~l~k~-~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 339 VLLTSPLVVTLGMSLTIPLAMFADVLIKG-KHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHhccchhheeeeeEeeeHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHhheecccc
Confidence 36799999888877766666666666667 99999999999999999998776543
No 114
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=24.00 E-value=4e+02 Score=21.70 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhhcC
Q 045440 54 AVFGMIWYSNASTK 67 (98)
Q Consensus 54 ~l~G~~~Ys~~k~~ 67 (98)
.+.+..+|...|.+
T Consensus 450 ~~~~~~~y~~~~~~ 463 (507)
T TIGR00910 450 AALPFIIYALHDKK 463 (507)
T ss_pred HHHHHHHHHHhccc
Confidence 44666777666554
No 115
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.56 E-value=2e+02 Score=19.57 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=29.8
Q ss_pred HHHhhhhheeeCCC--ccchhhHHhHHHHHHHHHHHHhhhcCCCCc
Q 045440 28 ILVLIMGFLFFGKE--GLNLHVVLGMIIAVFGMIWYSNASTKPGGK 71 (98)
Q Consensus 28 i~~i~~s~~~fg~~--~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~ 71 (98)
+++..+|+++-. . -++..-++|.+..++.++.|-+.-...-++
T Consensus 23 ~~vmy~gi~f~~-~~~im~ifmllG~L~~l~S~~VYfwIGmlStka 67 (114)
T PF11023_consen 23 MIVMYIGIFFKA-SPIIMVIFMLLGLLAILASTAVYFWIGMLSTKA 67 (114)
T ss_pred HHHHhhhhhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 344555655544 4 356778899999999999999987654443
No 116
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=22.19 E-value=41 Score=22.35 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=11.9
Q ss_pred CccchhhHHhHHHHHHHHHHHHhhhc
Q 045440 41 EGLNLHVVLGMIIAVFGMIWYSNAST 66 (98)
Q Consensus 41 ~~~t~~~~~G~~i~l~G~~~Ys~~k~ 66 (98)
+.+|...+.|++| |+.+|++...
T Consensus 59 N~is~a~i~alVi---aIY~YTfYSi 81 (108)
T KOG4782|consen 59 NHISFAGIGALVI---AIYGYTFYSI 81 (108)
T ss_pred hhhhhHHHHHHHH---Hhhhheeeeh
Confidence 4455555555544 5555555444
No 117
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.89 E-value=12 Score=29.89 Aligned_cols=38 Identities=34% Similarity=0.567 Sum_probs=32.1
Q ss_pred hhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440 22 LGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60 (98)
Q Consensus 22 ~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~ 60 (98)
.|.+--+...+++..+.+ |+++....+|++++++|+..
T Consensus 96 LGAlsvi~saila~~~L~-Ekl~~~g~lGc~l~v~Gst~ 133 (335)
T KOG2922|consen 96 LGALSVIISAILASFFLK-EKLNLLGILGCVLCVVGSTT 133 (335)
T ss_pred chhHHHHHHHHHHHHHHH-HHHHHhhhhheeEEecccEE
Confidence 456666677888889999 99999999999999999854
No 118
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=20.74 E-value=1.3e+02 Score=14.94 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=8.1
Q ss_pred ccchhhHHhHHHHHH
Q 045440 42 GLNLHVVLGMIIAVF 56 (98)
Q Consensus 42 ~~t~~~~~G~~i~l~ 56 (98)
.-.+.-++|+++...
T Consensus 9 ~~~~~~~~G~~l~~~ 23 (34)
T TIGR01167 9 GNSLLLLLGLLLLGL 23 (34)
T ss_pred ccHHHHHHHHHHHHH
Confidence 345566777733333
No 119
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=20.57 E-value=1.4e+02 Score=21.17 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=34.0
Q ss_pred hhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440 21 VLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS 65 (98)
Q Consensus 21 V~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k 65 (98)
+.=+-|-+.+.+.++..++ .+.+..++++.++...|...-...+
T Consensus 9 ~~~s~~l~~v~l~~~~~~~-~~~~~~~i~~~~l~~~g~l~~~ls~ 52 (222)
T TIGR00803 9 IFKQNNLVLIALGNLLAAG-KQVTQLKILSTALMTLGSLVASLGD 52 (222)
T ss_pred HHHhcchHHHHHhcccccc-eeeehHHHHHHHHHHHHHHHhHhhH
Confidence 3344566777888888888 8888999999999999988755443
No 120
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=20.01 E-value=1.5e+02 Score=24.74 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=35.8
Q ss_pred chhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCCCCCCCCCCCcccCCCC
Q 045440 17 VSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKERRSSLPTTRPQKHGNLG 89 (98)
Q Consensus 17 lT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~~~~~~~~~~~~~~~~~ 89 (98)
..|+|.|-+=-.++.+ +++.++.+-....-+-|++..++|.++|-..|-+++ ..- +|+-.+-+.|+..
T Consensus 160 ~shNiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq--s~G--LP~ie~~~~d~~e 227 (448)
T COG2271 160 TSHNIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ--SEG--LPPIEEYRGDPLE 227 (448)
T ss_pred hhhhcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc--ccC--CCCHHHhhcCchh
Confidence 4678888775555544 666655111222335566667777777665544433 222 4444444444444
Done!